locus-tag class description ABC08_00005 PF13932 GidA associated domain ABC08_00005 PF01134 Glucose inhibited division protein A ABC08_00010 PF02527 rRNA small subunit methyltransferase G ABC08_00015 PF13614 AAA domain ABC08_00025 PF02195 ParB-like nuclease domain ABC08_00025 PF17762 HTH domain found in ParB protein ABC08_00030 PF00710 Asparaginase, N-terminal ABC08_00030 PF17763 Glutaminase/Asparaginase C-terminal domain ABC08_00035 PF17763 Glutaminase/Asparaginase C-terminal domain ABC08_00035 PF00710 Asparaginase, N-terminal ABC08_00055 PF00009 Elongation factor Tu GTP binding domain ABC08_00055 PF03144 Elongation factor Tu domain 2 ABC08_00055 PF03143 Elongation factor Tu C-terminal domain ABC08_00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABC08_00070 PF02357 Transcription termination factor nusG ABC08_00070 PF00467 KOW motif ABC08_00075 PF03946 Ribosomal protein L11, N-terminal domain ABC08_00075 PF00298 Ribosomal protein L11, RNA binding domain ABC08_00080 PF00687 Ribosomal protein L1p/L10e family ABC08_00085 PF00466 Ribosomal protein L10 ABC08_00090 PF00542 Ribosomal protein L7/L12 C-terminal domain ABC08_00090 PF16320 Ribosomal protein L7/L12 dimerisation domain ABC08_00095 PF04565 RNA polymerase Rpb2, domain 3 ABC08_00095 PF04563 RNA polymerase beta subunit ABC08_00095 PF04560 RNA polymerase Rpb2, domain 7 ABC08_00095 PF10385 RNA polymerase beta subunit external 1 domain ABC08_00095 PF04561 RNA polymerase Rpb2, domain 2 ABC08_00095 PF00562 RNA polymerase Rpb2, domain 6 ABC08_00100 PF04998 RNA polymerase Rpb1, domain 5 ABC08_00100 PF05000 RNA polymerase Rpb1, domain 4 ABC08_00100 PF04983 RNA polymerase Rpb1, domain 3 ABC08_00100 PF00623 RNA polymerase Rpb1, domain 2 ABC08_00100 PF04997 RNA polymerase Rpb1, domain 1 ABC08_00135 PF00072 Response regulator receiver domain ABC08_00135 PF00486 Transcriptional regulatory protein, C terminal ABC08_00145 PF02515 CoA-transferase family III ABC08_00165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_00165 PF03466 LysR substrate binding domain ABC08_00170 PF00378 Enoyl-CoA hydratase/isomerase ABC08_00190 PF02091 Glycyl-tRNA synthetase alpha subunit ABC08_00195 PF05746 DALR anticodon binding domain ABC08_00195 PF02092 Glycyl-tRNA synthetase beta subunit ABC08_00205 PF01553 Acyltransferase ABC08_00215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABC08_00220 PF01327 Polypeptide deformylase ABC08_00260 PF00561 alpha/beta hydrolase fold ABC08_00265 PF07021 Methionine biosynthesis protein MetW ABC08_00265 PF00561 alpha/beta hydrolase fold ABC08_00275 PF07690 Major Facilitator Superfamily ABC08_00285 PF01177 Asp/Glu/Hydantoin racemase ABC08_00290 PF00005 ABC transporter ABC08_00295 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_00300 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_00305 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_00345 PF00175 Oxidoreductase NAD-binding domain ABC08_00345 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_00345 PF00970 Oxidoreductase FAD-binding domain ABC08_00350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_00360 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_00385 PF00183 Hsp90 protein ABC08_00390 PF00043 Glutathione S-transferase, C-terminal domain ABC08_00390 PF13417 Glutathione S-transferase, N-terminal domain ABC08_00395 PF01510 N-acetylmuramoyl-L-alanine amidase ABC08_00405 PF01578 Cytochrome C assembly protein ABC08_00410 PF02881 SRP54-type protein, helical bundle domain ABC08_00410 PF02978 Signal peptide binding domain ABC08_00410 PF00448 SRP54-type protein, GTPase domain ABC08_00425 PF02719 Polysaccharide biosynthesis protein ABC08_00435 PF10997 Alternate to MurJ ABC08_00440 PF00534 Glycosyl transferases group 1 ABC08_00440 PF00862 Sucrose synthase ABC08_00445 PF02397 Bacterial sugar transferase ABC08_00450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABC08_00460 PF02350 UDP-N-acetylglucosamine 2-epimerase ABC08_00465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABC08_00470 PF00132 Bacterial transferase hexapeptide (six repeats) ABC08_00475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABC08_00475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABC08_00480 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABC08_00485 PF00534 Glycosyl transferases group 1 ABC08_00485 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABC08_00495 PF03309 Type III pantothenate kinase ABC08_00505 PF02405 Permease MlaE ABC08_00510 PF00005 ABC transporter ABC08_00535 PF00768 D-alanyl-D-alanine carboxypeptidase ABC08_00535 PF07943 Penicillin-binding protein 5, C-terminal domain ABC08_00540 PF01063 Amino-transferase class IV ABC08_00545 PF04359 Protein of unknown function (DUF493) ABC08_00550 PF03099 Biotin/lipoate A/B protein ligase family ABC08_00555 PF04055 Radical SAM superfamily ABC08_00555 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ABC08_00560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABC08_00565 PF04321 RmlD substrate binding domain ABC08_00570 PF16363 GDP-mannose 4,6 dehydratase ABC08_00585 PF01053 Cys/Met metabolism PLP-dependent enzyme ABC08_00590 PF00085 Thioredoxin ABC08_00590 PF01323 DSBA-like thioredoxin domain ABC08_00600 PF03485 Arginyl tRNA synthetase N terminal domain ABC08_00600 PF05746 DALR anticodon binding domain ABC08_00600 PF00750 tRNA synthetases class I (R) ABC08_00620 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_00625 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_00630 PF13416 Bacterial extracellular solute-binding protein ABC08_00635 PF17912 MalK OB fold domain ABC08_00635 PF00005 ABC transporter ABC08_00640 PF00149 Calcineurin-like phosphoesterase ABC08_00650 PF12857 TOBE-like domain ABC08_00650 PF00005 ABC transporter ABC08_00655 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_00670 PF00356 Bacterial regulatory proteins, lacI family ABC08_00680 PF01425 Amidase ABC08_00685 PF08502 LeuA allosteric (dimerisation) domain ABC08_00685 PF00682 HMGL-like ABC08_00695 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABC08_00695 PF04963 Sigma-54 factor, core binding domain ABC08_00695 PF04552 Sigma-54, DNA binding domain ABC08_00705 PF03466 LysR substrate binding domain ABC08_00705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_00720 PF13609 Gram-negative porin ABC08_00725 PF00585 C-terminal regulatory domain of Threonine dehydratase ABC08_00725 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_00740 PF00392 Bacterial regulatory proteins, gntR family ABC08_00740 PF07729 FCD domain ABC08_00745 PF02515 CoA-transferase family III ABC08_00755 PF00378 Enoyl-CoA hydratase/isomerase ABC08_00760 PF01494 FAD binding domain ABC08_00765 PF01494 FAD binding domain ABC08_00770 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_00785 PF02626 Carboxyltransferase domain, subdomain A and B ABC08_00790 PF02682 Carboxyltransferase domain, subdomain C and D ABC08_00800 PF03466 LysR substrate binding domain ABC08_00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_00805 PF01842 ACT domain ABC08_00805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABC08_00805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC08_00815 PF00512 His Kinase A (phospho-acceptor) domain ABC08_00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_00815 PF00672 HAMP domain ABC08_00820 PF00072 Response regulator receiver domain ABC08_00820 PF00486 Transcriptional regulatory protein, C terminal ABC08_00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_00825 PF00512 His Kinase A (phospho-acceptor) domain ABC08_00825 PF00989 PAS fold ABC08_00825 PF11808 Phosphate regulon sensor protein PhoR ABC08_00830 PF00486 Transcriptional regulatory protein, C terminal ABC08_00830 PF00072 Response regulator receiver domain ABC08_00835 PF01209 ubiE/COQ5 methyltransferase family ABC08_00850 PF03109 ABC1 family ABC08_00870 PF04536 TPM domain ABC08_00880 PF00270 DEAD/DEAH box helicase ABC08_00880 PF00271 Helicase conserved C-terminal domain ABC08_00885 PF01810 LysE type translocator ABC08_00890 PF00009 Elongation factor Tu GTP binding domain ABC08_00890 PF03144 Elongation factor Tu domain 2 ABC08_00890 PF16658 Class II release factor RF3, C-terminal domain ABC08_00900 PF00210 Ferritin-like domain ABC08_00930 PF01588 Putative tRNA binding domain ABC08_00930 PF09334 tRNA synthetases class I (M) ABC08_00940 PF10609 NUBPL iron-transfer P-loop NTPase ABC08_00955 PF00692 dUTPase ABC08_00980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ABC08_00980 PF01276 Orn/Lys/Arg decarboxylase, major domain ABC08_00980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ABC08_00995 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABC08_00995 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABC08_01000 PF02535 ZIP Zinc transporter ABC08_01005 PF08669 Glycine cleavage T-protein C-terminal barrel domain ABC08_01005 PF01571 Aminomethyltransferase folate-binding domain ABC08_01010 PF01597 Glycine cleavage H-protein ABC08_01015 PF02347 Glycine cleavage system P-protein ABC08_01020 PF07729 FCD domain ABC08_01020 PF00392 Bacterial regulatory proteins, gntR family ABC08_01025 PF02515 CoA-transferase family III ABC08_01055 PF12146 Serine aminopeptidase, S33 ABC08_01065 PF02426 Muconolactone delta-isomerase ABC08_01070 PF01144 Coenzyme A transferase ABC08_01075 PF01144 Coenzyme A transferase ABC08_01080 PF01614 Bacterial transcriptional regulator ABC08_01080 PF09339 IclR helix-turn-helix domain ABC08_01090 PF02667 Short chain fatty acid transporter ABC08_01095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_01095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_01100 PF00082 Subtilase family ABC08_01100 PF03797 Autotransporter beta-domain ABC08_01105 PF00311 Phosphoenolpyruvate carboxylase ABC08_01110 PF06508 Queuosine biosynthesis protein QueC ABC08_01135 PF02913 FAD linked oxidases, C-terminal domain ABC08_01135 PF01565 FAD binding domain ABC08_01140 PF00171 Aldehyde dehydrogenase family ABC08_01145 PF13667 ThiC-associated domain ABC08_01145 PF01964 Radical SAM ThiC family ABC08_01150 PF02355 Protein export membrane protein ABC08_01150 PF07549 SecD/SecF GG Motif ABC08_01155 PF09518 HindIII restriction endonuclease ABC08_01185 PF02627 Carboxymuconolactone decarboxylase family ABC08_01190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABC08_01190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABC08_01195 PF00392 Bacterial regulatory proteins, gntR family ABC08_01195 PF07702 UTRA domain ABC08_01200 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_01205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_01215 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_01220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABC08_01225 PF01743 Poly A polymerase head domain ABC08_01225 PF12627 Probable RNA and SrmB- binding site of polymerase A ABC08_01225 PF12626 Polymerase A arginine-rich C-terminus ABC08_01235 PF00308 Bacterial dnaA protein ABC08_01240 PF02769 AIR synthase related protein, C-terminal domain ABC08_01240 PF00586 AIR synthase related protein, N-terminal domain ABC08_01250 PF01119 DNA mismatch repair protein, C-terminal domain ABC08_01250 PF08676 MutL C terminal dimerisation domain ABC08_01255 PF09335 SNARE associated Golgi protein ABC08_01260 PF11741 AMIN domain ABC08_01260 PF01520 N-acetylmuramoyl-L-alanine amidase ABC08_01265 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC08_01270 PF10415 Fumarase C C-terminus ABC08_01270 PF00206 Lyase ABC08_01280 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_01285 PF03466 LysR substrate binding domain ABC08_01285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_01295 PF02515 CoA-transferase family III ABC08_01300 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_01325 PF01654 Cytochrome bd terminal oxidase subunit I ABC08_01330 PF02322 Cytochrome bd terminal oxidase subunit II ABC08_01335 PF08173 Membrane bound YbgT-like protein ABC08_01340 PF00005 ABC transporter ABC08_01340 PF00664 ABC transporter transmembrane region ABC08_01345 PF00005 ABC transporter ABC08_01345 PF00664 ABC transporter transmembrane region ABC08_01350 PF00156 Phosphoribosyl transferase domain ABC08_01390 PF04386 Stringent starvation protein B ABC08_01395 PF00043 Glutathione S-transferase, C-terminal domain ABC08_01395 PF02798 Glutathione S-transferase, N-terminal domain ABC08_01400 PF02167 Cytochrome C1 family ABC08_01405 PF00032 Cytochrome b(C-terminal)/b6/petD ABC08_01405 PF00033 Cytochrome b/b6/petB ABC08_01410 PF00355 Rieske [2Fe-2S] domain ABC08_01410 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ABC08_01415 PF01741 Large-conductance mechanosensitive channel, MscL ABC08_01420 PF01784 NIF3 (NGG1p interacting factor 3) ABC08_01425 PF13180 PDZ domain ABC08_01435 PF04299 Putative FMN-binding domain ABC08_01440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC08_01445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_01450 PF07859 alpha/beta hydrolase fold ABC08_01460 PF08502 LeuA allosteric (dimerisation) domain ABC08_01460 PF00682 HMGL-like ABC08_01465 PF12833 Helix-turn-helix domain ABC08_01470 PF00920 Dehydratase family ABC08_01475 PF07690 Major Facilitator Superfamily ABC08_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_01480 PF03466 LysR substrate binding domain ABC08_01490 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) ABC08_01520 PF07859 alpha/beta hydrolase fold ABC08_01530 PF02653 Branched-chain amino acid transport system / permease component ABC08_01535 PF11862 Domain of unknown function (DUF3382) ABC08_01535 PF02653 Branched-chain amino acid transport system / permease component ABC08_01540 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_01540 PF00005 ABC transporter ABC08_01545 PF00005 ABC transporter ABC08_01560 PF00378 Enoyl-CoA hydratase/isomerase ABC08_01565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_01565 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_01565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_01570 PF13193 AMP-binding enzyme C-terminal domain ABC08_01570 PF00501 AMP-binding enzyme ABC08_01590 PF00202 Aminotransferase class-III ABC08_01595 PF02581 Thiamine monophosphate synthase ABC08_01600 PF08543 Phosphomethylpyrimidine kinase ABC08_01605 PF00301 Rubredoxin ABC08_01610 PF02622 Uncharacterized ACR, COG1678 ABC08_01615 PF03652 Holliday junction resolvase ABC08_01620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABC08_01620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABC08_01625 PF01979 Amidohydrolase family ABC08_01630 PF01553 Acyltransferase ABC08_01635 PF00149 Calcineurin-like phosphoesterase ABC08_01645 PF00912 Transglycosylase ABC08_01660 PF13193 AMP-binding enzyme C-terminal domain ABC08_01660 PF00501 AMP-binding enzyme ABC08_01665 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_01680 PF12706 Beta-lactamase superfamily domain ABC08_01685 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_01705 PF03707 Bacterial signalling protein N terminal repeat ABC08_01705 PF00990 Diguanylate cyclase, GGDEF domain ABC08_01705 PF00563 EAL domain ABC08_01710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABC08_01710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABC08_01715 PF13532 2OG-Fe(II) oxygenase superfamily ABC08_01720 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA ABC08_01725 PF04463 Protein of unknown function (DUF523) ABC08_01730 PF00005 ABC transporter ABC08_01735 PF01032 FecCD transport family ABC08_01740 PF01497 Periplasmic binding protein ABC08_01745 PF05171 Haemin-degrading HemS.ChuX domain ABC08_01750 PF07715 TonB-dependent Receptor Plug Domain ABC08_01750 PF00593 TonB dependent receptor ABC08_01750 PF04886 PT repeat ABC08_01755 PF04773 FecR protein ABC08_01755 PF16220 Domain of unknown function (DUF4880) ABC08_01760 PF04542 Sigma-70 region 2 ABC08_01760 PF08281 Sigma-70, region 4 ABC08_01785 PF02423 Ornithine cyclodeaminase/mu-crystallin family ABC08_01795 PF07729 FCD domain ABC08_01795 PF00392 Bacterial regulatory proteins, gntR family ABC08_01815 PF00171 Aldehyde dehydrogenase family ABC08_01825 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_01825 PF00970 Oxidoreductase FAD-binding domain ABC08_01825 PF00175 Oxidoreductase NAD-binding domain ABC08_01850 PF03458 UPF0126 domain ABC08_01855 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABC08_01855 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABC08_01860 PF03372 Endonuclease/Exonuclease/phosphatase family ABC08_01865 PF00156 Phosphoribosyl transferase domain ABC08_01870 PF02934 GatB/GatE catalytic domain ABC08_01870 PF02637 GatB domain ABC08_01875 PF01425 Amidase ABC08_01880 PF02686 Glu-tRNAGln amidotransferase C subunit ABC08_01890 PF04085 rod shape-determining protein MreC ABC08_01900 PF03717 Penicillin-binding Protein dimerisation domain ABC08_01900 PF00905 Penicillin binding protein transpeptidase domain ABC08_01905 PF01098 Cell cycle protein ABC08_01910 PF02615 Malate/L-lactate dehydrogenase ABC08_01915 PF00939 Sodium:sulfate symporter transmembrane region ABC08_01920 PF00440 Bacterial regulatory proteins, tetR family ABC08_01930 PF00696 Amino acid kinase family ABC08_01935 PF03180 NLPA lipoprotein ABC08_01940 PF00578 AhpC/TSA family ABC08_01945 PF04972 BON domain ABC08_01950 PF13580 SIS domain ABC08_01955 PF02021 Uncharacterised protein family UPF0102 ABC08_01960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABC08_01965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABC08_01965 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABC08_01985 PF02515 CoA-transferase family III ABC08_01990 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_01995 PF02515 CoA-transferase family III ABC08_02015 PF09339 IclR helix-turn-helix domain ABC08_02020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_02035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_02035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_02035 PF00378 Enoyl-CoA hydratase/isomerase ABC08_02040 PF02515 CoA-transferase family III ABC08_02045 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_02045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_02045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_02050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02050 PF03466 LysR substrate binding domain ABC08_02060 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_02070 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_02080 PF00892 EamA-like transporter family ABC08_02085 PF01810 LysE type translocator ABC08_02090 PF12146 Serine aminopeptidase, S33 ABC08_02105 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase ABC08_02110 PF00535 Glycosyl transferase family 2 ABC08_02125 PF03616 Sodium/glutamate symporter ABC08_02135 PF02667 Short chain fatty acid transporter ABC08_02150 PF00929 Exonuclease ABC08_02165 PF03144 Elongation factor Tu domain 2 ABC08_02165 PF00009 Elongation factor Tu GTP binding domain ABC08_02165 PF14492 Elongation Factor G, domain II ABC08_02165 PF00679 Elongation factor G C-terminus ABC08_02165 PF03764 Elongation factor G, domain IV ABC08_02170 PF00582 Universal stress protein family ABC08_02180 PF00392 Bacterial regulatory proteins, gntR family ABC08_02180 PF00155 Aminotransferase class I and II ABC08_02190 PF02308 MgtC family ABC08_02195 PF03741 Integral membrane protein TerC family ABC08_02195 PF03471 Transporter associated domain ABC08_02200 PF02515 CoA-transferase family III ABC08_02205 PF00378 Enoyl-CoA hydratase/isomerase ABC08_02210 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_02215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02215 PF03466 LysR substrate binding domain ABC08_02220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_02220 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_02220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_02230 PF00108 Thiolase, N-terminal domain ABC08_02230 PF02803 Thiolase, C-terminal domain ABC08_02250 PF03466 LysR substrate binding domain ABC08_02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02255 PF00313 'Cold-shock' DNA-binding domain ABC08_02265 PF00392 Bacterial regulatory proteins, gntR family ABC08_02265 PF07729 FCD domain ABC08_02270 PF00171 Aldehyde dehydrogenase family ABC08_02275 PF02667 Short chain fatty acid transporter ABC08_02280 PF00970 Oxidoreductase FAD-binding domain ABC08_02280 PF00042 Globin ABC08_02280 PF00175 Oxidoreductase NAD-binding domain ABC08_02285 PF01042 Endoribonuclease L-PSP ABC08_02290 PF03466 LysR substrate binding domain ABC08_02290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02310 PF02515 CoA-transferase family III ABC08_02320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02320 PF03466 LysR substrate binding domain ABC08_02325 PF02515 CoA-transferase family III ABC08_02335 PF01794 Ferric reductase like transmembrane component ABC08_02340 PF00174 Oxidoreductase molybdopterin binding domain ABC08_02345 PF13419 Haloacid dehalogenase-like hydrolase ABC08_02350 PF01479 S4 domain ABC08_02350 PF00849 RNA pseudouridylate synthase ABC08_02355 PF00575 S1 RNA binding domain ABC08_02355 PF10150 Ribonuclease E/G family ABC08_02355 PF12111 Polyribonucleotide phosphorylase C terminal ABC08_02375 PF17848 Acetyl-coA carboxylase zinc finger domain ABC08_02375 PF01039 Carboxyl transferase domain ABC08_02380 PF00290 Tryptophan synthase alpha chain ABC08_02385 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_02390 PF07687 Peptidase dimerisation domain ABC08_02390 PF01546 Peptidase family M20/M25/M40 ABC08_02395 PF02824 TGS domain ABC08_02395 PF04607 Region found in RelA / SpoT proteins ABC08_02395 PF13291 ACT domain ABC08_02400 PF06167 Glucose-regulated metallo-peptidase M90 ABC08_02410 PF01042 Endoribonuclease L-PSP ABC08_02415 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABC08_02415 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABC08_02420 PF11953 Domain of unknown function (DUF3470) ABC08_02420 PF00037 4Fe-4S binding domain ABC08_02425 PF00175 Oxidoreductase NAD-binding domain ABC08_02425 PF00970 Oxidoreductase FAD-binding domain ABC08_02435 PF04060 Putative Fe-S cluster ABC08_02440 PF00730 HhH-GPD superfamily base excision DNA repair protein ABC08_02440 PF00633 Helix-hairpin-helix motif ABC08_02440 PF10576 Iron-sulfur binding domain of endonuclease III ABC08_02445 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_02445 PF00005 ABC transporter ABC08_02450 PF00005 ABC transporter ABC08_02460 PF02653 Branched-chain amino acid transport system / permease component ABC08_02475 PF01063 Amino-transferase class IV ABC08_02480 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_02480 PF00005 ABC transporter ABC08_02495 PF02632 BioY family ABC08_02500 PF02361 Cobalt transport protein ABC08_02505 PF00005 ABC transporter ABC08_02510 PF01641 SelR domain ABC08_02515 PF04279 Intracellular septation protein A ABC08_02530 PF12826 Helix-hairpin-helix motif ABC08_02530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ABC08_02530 PF03120 NAD-dependent DNA ligase OB-fold domain ABC08_02530 PF01653 NAD-dependent DNA ligase adenylation domain ABC08_02530 PF00533 BRCA1 C Terminus (BRCT) domain ABC08_02540 PF02463 RecF/RecN/SMC N terminal domain ABC08_02540 PF06470 SMC proteins Flexible Hinge Domain ABC08_02545 PF07690 Major Facilitator Superfamily ABC08_02550 PF03167 Uracil DNA glycosylase superfamily ABC08_02555 PF00814 Glycoprotease family ABC08_02560 PF00486 Transcriptional regulatory protein, C terminal ABC08_02560 PF00072 Response regulator receiver domain ABC08_02570 PF00672 HAMP domain ABC08_02570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_02570 PF00512 His Kinase A (phospho-acceptor) domain ABC08_02575 PF00578 AhpC/TSA family ABC08_02580 PF02627 Carboxymuconolactone decarboxylase family ABC08_02600 PF00392 Bacterial regulatory proteins, gntR family ABC08_02600 PF07729 FCD domain ABC08_02615 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_02620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC08_02620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABC08_02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02630 PF03466 LysR substrate binding domain ABC08_02640 PF00202 Aminotransferase class-III ABC08_02645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABC08_02645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABC08_02650 PF00764 Arginosuccinate synthase ABC08_02655 PF02705 K+ potassium transporter ABC08_02660 PF08521 Two-component sensor kinase N-terminal ABC08_02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_02660 PF00512 His Kinase A (phospho-acceptor) domain ABC08_02665 PF00072 Response regulator receiver domain ABC08_02665 PF00486 Transcriptional regulatory protein, C terminal ABC08_02670 PF02472 Biopolymer transport protein ExbD/TolR ABC08_02675 PF01618 MotA/TolQ/ExbB proton channel family ABC08_02690 PF00216 Bacterial DNA-binding protein ABC08_02695 PF18331 PKHD-type hydroxylase C-terminal domain ABC08_02695 PF13640 2OG-Fe(II) oxygenase superfamily ABC08_02700 PF01053 Cys/Met metabolism PLP-dependent enzyme ABC08_02705 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABC08_02705 PF00588 SpoU rRNA Methylase family ABC08_02710 PF00773 RNB domain ABC08_02710 PF00575 S1 RNA binding domain ABC08_02710 PF08206 Ribonuclease B OB domain ABC08_02710 PF08461 Ribonuclease R winged-helix domain ABC08_02710 PF17876 Cold shock domain ABC08_02730 PF13673 Acetyltransferase (GNAT) domain ABC08_02735 PF03547 Membrane transport protein ABC08_02740 PF04143 Sulphur transport ABC08_02745 PF01645 Conserved region in glutamate synthase ABC08_02755 PF13091 PLD-like domain ABC08_02755 PF13396 Phospholipase_D-nuclease N-terminal ABC08_02765 PF10017 Histidine-specific methyltransferase, SAM-dependent ABC08_02800 PF00072 Response regulator receiver domain ABC08_02805 PF00990 Diguanylate cyclase, GGDEF domain ABC08_02830 PF03466 LysR substrate binding domain ABC08_02830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_02840 PF00890 FAD binding domain ABC08_02860 PF00166 Chaperonin 10 Kd subunit ABC08_02865 PF00118 TCP-1/cpn60 chaperonin family ABC08_02870 PF03797 Autotransporter beta-domain ABC08_02870 PF03212 Pertactin ABC08_02875 PF03631 Virulence factor BrkB ABC08_02880 PF01219 Prokaryotic diacylglycerol kinase ABC08_02885 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_02890 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABC08_02895 PF00994 Probable molybdopterin binding domain ABC08_02895 PF18146 Damage-inducible protein CinA KH domain ABC08_02895 PF02464 Competence-damaged protein ABC08_02900 PF04608 Phosphatidylglycerophosphatase A ABC08_02905 PF00586 AIR synthase related protein, N-terminal domain ABC08_02905 PF02769 AIR synthase related protein, C-terminal domain ABC08_02910 PF01029 NusB family ABC08_02915 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABC08_02920 PF00925 GTP cyclohydrolase II ABC08_02920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABC08_02955 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_02960 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_02975 PF00448 SRP54-type protein, GTPase domain ABC08_02975 PF02881 SRP54-type protein, helical bundle domain ABC08_02985 PF01467 Cytidylyltransferase-like ABC08_02990 PF00037 4Fe-4S binding domain ABC08_02995 PF03594 Benzoate membrane transport protein ABC08_03010 PF01022 Bacterial regulatory protein, arsR family ABC08_03025 PF03466 LysR substrate binding domain ABC08_03025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_03040 PF00005 ABC transporter ABC08_03040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_03045 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_03050 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_03060 PF01515 Phosphate acetyl/butaryl transferase ABC08_03060 PF03949 Malic enzyme, NAD binding domain ABC08_03060 PF00390 Malic enzyme, N-terminal domain ABC08_03065 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABC08_03070 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_03075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_03075 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_03075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_03080 PF00392 Bacterial regulatory proteins, gntR family ABC08_03080 PF07729 FCD domain ABC08_03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_03120 PF03466 LysR substrate binding domain ABC08_03130 PF04376 Arginine-tRNA-protein transferase, N terminus ABC08_03130 PF04377 Arginine-tRNA-protein transferase, C terminus ABC08_03135 PF01180 Dihydroorotate dehydrogenase ABC08_03145 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_03150 PF18807 Tripartite Tc toxins repeat ABC08_03150 PF05785 Rho-activating domain of cytotoxic necrotizing factor ABC08_03155 PF09339 IclR helix-turn-helix domain ABC08_03155 PF01614 Bacterial transcriptional regulator ABC08_03160 PF18146 Damage-inducible protein CinA KH domain ABC08_03160 PF02464 Competence-damaged protein ABC08_03160 PF00994 Probable molybdopterin binding domain ABC08_03180 PF00270 DEAD/DEAH box helicase ABC08_03180 PF00271 Helicase conserved C-terminal domain ABC08_03195 PF01063 Amino-transferase class IV ABC08_03210 PF00561 alpha/beta hydrolase fold ABC08_03215 PF01435 Peptidase family M48 ABC08_03215 PF13181 Tetratricopeptide repeat ABC08_03220 PF00483 Nucleotidyl transferase ABC08_03230 PF13609 Gram-negative porin ABC08_03255 PF05195 Aminopeptidase P, N-terminal domain ABC08_03255 PF00557 Metallopeptidase family M24 ABC08_03265 PF01494 FAD binding domain ABC08_03270 PF01207 Dihydrouridine synthase (Dus) ABC08_03275 PF02954 Bacterial regulatory protein, Fis family ABC08_03280 PF01808 AICARFT/IMPCHase bienzyme ABC08_03280 PF02142 MGS-like domain ABC08_03285 PF02075 Crossover junction endodeoxyribonuclease RuvC ABC08_03290 PF07499 RuvA, C-terminal domain ABC08_03290 PF01330 RuvA N terminal domain ABC08_03295 PF01370 NAD dependent epimerase/dehydratase family ABC08_03300 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_03305 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABC08_03305 PF05491 RuvB C-terminal winged helix domain ABC08_03305 PF17864 RuvB AAA lid domain ABC08_03310 PF00271 Helicase conserved C-terminal domain ABC08_03310 PF00570 HRDC domain ABC08_03310 PF16124 RecQ zinc-binding ABC08_03310 PF09382 RQC domain ABC08_03310 PF00270 DEAD/DEAH box helicase ABC08_03325 PF00484 Carbonic anhydrase ABC08_03330 PF01425 Amidase ABC08_03335 PF13458 Periplasmic binding protein ABC08_03340 PF02653 Branched-chain amino acid transport system / permease component ABC08_03345 PF02653 Branched-chain amino acid transport system / permease component ABC08_03350 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_03350 PF00005 ABC transporter ABC08_03355 PF00005 ABC transporter ABC08_03360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABC08_03360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABC08_03370 PF03180 NLPA lipoprotein ABC08_03510 PF06791 Prophage tail length tape measure protein ABC08_03575 PF02586 SOS response associated peptidase (SRAP) ABC08_03585 PF00486 Transcriptional regulatory protein, C terminal ABC08_03585 PF00072 Response regulator receiver domain ABC08_03590 PF00293 NUDIX domain ABC08_03595 PF03129 Anticodon binding domain ABC08_03595 PF04073 Aminoacyl-tRNA editing domain ABC08_03595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABC08_03600 PF03061 Thioesterase superfamily ABC08_03605 PF01618 MotA/TolQ/ExbB proton channel family ABC08_03610 PF02472 Biopolymer transport protein ExbD/TolR ABC08_03620 PF07676 WD40-like Beta Propeller Repeat ABC08_03620 PF04052 TolB amino-terminal domain ABC08_03625 PF00691 OmpA family ABC08_03635 PF01032 FecCD transport family ABC08_03640 PF00005 ABC transporter ABC08_03645 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_03650 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_03670 PF07670 Nucleoside recognition ABC08_03675 PF00224 Pyruvate kinase, barrel domain ABC08_03675 PF02887 Pyruvate kinase, alpha/beta domain ABC08_03680 PF02595 Glycerate kinase family ABC08_03685 PF00398 Ribosomal RNA adenine dimethylase ABC08_03690 PF00639 PPIC-type PPIASE domain ABC08_03690 PF09312 SurA N-terminal domain ABC08_03695 PF04453 LPS transport system D ABC08_03700 PF01636 Phosphotransferase enzyme family ABC08_03705 PF00483 Nucleotidyl transferase ABC08_03715 PF01329 Pterin 4 alpha carbinolamine dehydratase ABC08_03740 PF00202 Aminotransferase class-III ABC08_03745 PF01425 Amidase ABC08_03750 PF00005 ABC transporter ABC08_03750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_03755 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_03760 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_03765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_03785 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABC08_03790 PF16653 Saccharopine dehydrogenase C-terminal domain ABC08_03790 PF03435 Saccharopine dehydrogenase NADP binding domain ABC08_03805 PF04264 YceI-like domain ABC08_03810 PF00593 TonB dependent receptor ABC08_03810 PF07715 TonB-dependent Receptor Plug Domain ABC08_03815 PF16220 Domain of unknown function (DUF4880) ABC08_03815 PF04773 FecR protein ABC08_03855 PF01472 PUA domain ABC08_03855 PF00696 Amino acid kinase family ABC08_03860 PF01926 50S ribosome-binding GTPase ABC08_03860 PF01018 GTP1/OBG ABC08_03865 PF01016 Ribosomal L27 protein ABC08_03870 PF00829 Ribosomal prokaryotic L21 protein ABC08_03880 PF00348 Polyprenyl synthetase ABC08_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_03890 PF03466 LysR substrate binding domain ABC08_03895 PF01968 Hydantoinase/oxoprolinase ABC08_03895 PF05378 Hydantoinase/oxoprolinase N-terminal region ABC08_03900 PF02538 Hydantoinase B/oxoprolinase ABC08_03905 PF01266 FAD dependent oxidoreductase ABC08_03915 PF00171 Aldehyde dehydrogenase family ABC08_03920 PF02794 RTX toxin acyltransferase family ABC08_03930 PF02382 N-terminal domain in RTX protein ABC08_03930 PF03497 Anthrax toxin LF subunit ABC08_03930 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ABC08_03935 PF00005 ABC transporter ABC08_03935 PF00664 ABC transporter transmembrane region ABC08_03935 PF03412 Peptidase C39 family ABC08_03940 PF13533 Biotin-lipoyl like ABC08_03945 PF02321 Outer membrane efflux protein ABC08_03955 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_03965 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_03970 PF00005 ABC transporter ABC08_03975 PF01063 Amino-transferase class IV ABC08_03995 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_03995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_03995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_04000 PF00392 Bacterial regulatory proteins, gntR family ABC08_04000 PF07729 FCD domain ABC08_04010 PF07729 FCD domain ABC08_04010 PF00392 Bacterial regulatory proteins, gntR family ABC08_04015 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_04015 PF00107 Zinc-binding dehydrogenase ABC08_04020 PF13193 AMP-binding enzyme C-terminal domain ABC08_04020 PF00501 AMP-binding enzyme ABC08_04030 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_04035 PF00005 ABC transporter ABC08_04040 PF09084 NMT1/THI5 like ABC08_04050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_04050 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_04050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_04070 PF01433 Peptidase family M1 domain ABC08_04070 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ABC08_04070 PF11940 Domain of unknown function (DUF3458) Ig-like fold ABC08_04075 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABC08_04085 PF02542 YgbB family ABC08_04090 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABC08_04095 PF03461 TRCF domain ABC08_04095 PF02559 CarD-like/TRCF domain ABC08_04095 PF00270 DEAD/DEAH box helicase ABC08_04095 PF00271 Helicase conserved C-terminal domain ABC08_04095 PF17757 UvrB interaction domain ABC08_04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_04105 PF03466 LysR substrate binding domain ABC08_04110 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_04115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_04115 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_04115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_04130 PF07715 TonB-dependent Receptor Plug Domain ABC08_04130 PF00593 TonB dependent receptor ABC08_04135 PF00593 TonB dependent receptor ABC08_04135 PF07715 TonB-dependent Receptor Plug Domain ABC08_04145 PF00361 Proton-conducting membrane transporter ABC08_04150 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ABC08_04150 PF00361 Proton-conducting membrane transporter ABC08_04155 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABC08_04155 PF00361 Proton-conducting membrane transporter ABC08_04160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC08_04165 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABC08_04170 PF12838 4Fe-4S dicluster domain ABC08_04175 PF00146 NADH dehydrogenase ABC08_04180 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ABC08_04180 PF00384 Molybdopterin oxidoreductase ABC08_04180 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABC08_04185 PF10531 SLBB domain ABC08_04185 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABC08_04185 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABC08_04195 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABC08_04200 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABC08_04205 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABC08_04210 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABC08_04215 PF13609 Gram-negative porin ABC08_04240 PF01569 PAP2 superfamily ABC08_04250 PF00781 Diacylglycerol kinase catalytic domain ABC08_04255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_04255 PF03466 LysR substrate binding domain ABC08_04260 PF02028 BCCT, betaine/carnitine/choline family transporter ABC08_04270 PF01638 HxlR-like helix-turn-helix ABC08_04275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABC08_04280 PF00873 AcrB/AcrD/AcrF family ABC08_04285 PF02321 Outer membrane efflux protein ABC08_04295 PF00127 Copper binding proteins, plastocyanin/azurin family ABC08_04305 PF01968 Hydantoinase/oxoprolinase ABC08_04305 PF05378 Hydantoinase/oxoprolinase N-terminal region ABC08_04315 PF01266 FAD dependent oxidoreductase ABC08_04320 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_04335 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABC08_04340 PF01053 Cys/Met metabolism PLP-dependent enzyme ABC08_04345 PF03466 LysR substrate binding domain ABC08_04345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_04360 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_04365 PF14698 Argininosuccinate lyase C-terminal ABC08_04365 PF00206 Lyase ABC08_04380 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_04385 PF05034 Methylaspartate ammonia-lyase N-terminus ABC08_04385 PF07476 Methylaspartate ammonia-lyase C-terminus ABC08_04395 PF02028 BCCT, betaine/carnitine/choline family transporter ABC08_04405 PF03840 Preprotein translocase SecG subunit ABC08_04410 PF00121 Triosephosphate isomerase ABC08_04415 PF08990 Erythronolide synthase docking ABC08_04415 PF16197 Ketoacyl-synthetase C-terminal extension ABC08_04415 PF00698 Acyl transferase domain ABC08_04415 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_04415 PF00109 Beta-ketoacyl synthase, N-terminal domain ABC08_04415 PF08659 KR domain ABC08_04415 PF14765 Polyketide synthase dehydratase ABC08_04415 PF02801 Beta-ketoacyl synthase, C-terminal domain ABC08_04415 PF00550 Phosphopantetheine attachment site ABC08_04430 PF13291 ACT domain ABC08_04430 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_04445 PF03725 3' exoribonuclease family, domain 2 ABC08_04445 PF00575 S1 RNA binding domain ABC08_04445 PF01138 3' exoribonuclease family, domain 1 ABC08_04445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABC08_04445 PF00013 KH domain ABC08_04450 PF00312 Ribosomal protein S15 ABC08_04460 PF01066 CDP-alcohol phosphatidyltransferase ABC08_04465 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABC08_04465 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABC08_04470 PF10369 Small subunit of acetolactate synthase ABC08_04475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_04475 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_04475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_04490 PF00005 ABC transporter ABC08_04490 PF00664 ABC transporter transmembrane region ABC08_04495 PF05724 Thiopurine S-methyltransferase (TPMT) ABC08_04510 PF07238 PilZ domain ABC08_04510 PF07317 Flagellar regulator YcgR ABC08_04530 PF01966 HD domain ABC08_04540 PF00364 Biotin-requiring enzyme ABC08_04545 PF00364 Biotin-requiring enzyme ABC08_04545 PF00682 HMGL-like ABC08_04545 PF02436 Conserved carboxylase domain ABC08_04565 PF07702 UTRA domain ABC08_04565 PF00392 Bacterial regulatory proteins, gntR family ABC08_04570 PF02785 Biotin carboxylase C-terminal domain ABC08_04570 PF00289 Biotin carboxylase, N-terminal domain ABC08_04570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABC08_04620 PF00664 ABC transporter transmembrane region ABC08_04620 PF00005 ABC transporter ABC08_04625 PF00248 Aldo/keto reductase family ABC08_04630 PF00248 Aldo/keto reductase family ABC08_04645 PF00149 Calcineurin-like phosphoesterase ABC08_04650 PF00905 Penicillin binding protein transpeptidase domain ABC08_04650 PF00912 Transglycosylase ABC08_04650 PF17092 Penicillin-binding protein OB-like domain ABC08_04655 PF00326 Prolyl oligopeptidase family ABC08_04665 PF11799 impB/mucB/samB family C-terminal domain ABC08_04665 PF11798 IMS family HHH motif ABC08_04665 PF00817 impB/mucB/samB family ABC08_04675 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_04680 PF03466 LysR substrate binding domain ABC08_04700 PF07690 Major Facilitator Superfamily ABC08_04705 PF13419 Haloacid dehalogenase-like hydrolase ABC08_04715 PF00691 OmpA family ABC08_04720 PF00521 DNA gyrase/topoisomerase IV, subunit A ABC08_04720 PF03989 DNA gyrase C-terminal domain, beta-propeller ABC08_04725 PF00266 Aminotransferase class-V ABC08_04730 PF01842 ACT domain ABC08_04730 PF01817 Chorismate mutase type II ABC08_04730 PF00800 Prephenate dehydratase ABC08_04735 PF02153 Prephenate dehydrogenase ABC08_04740 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABC08_04745 PF02224 Cytidylate kinase ABC08_04750 PF00575 S1 RNA binding domain ABC08_04755 PF00216 Bacterial DNA-binding protein ABC08_04765 PF18073 Rubredoxin metal binding domain ABC08_04775 PF01370 NAD dependent epimerase/dehydratase family ABC08_04780 PF10531 SLBB domain ABC08_04790 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_04795 PF13406 Transglycosylase SLT domain ABC08_04800 PF00850 Histone deacetylase domain ABC08_04805 PF01012 Electron transfer flavoprotein domain ABC08_04810 PF00766 Electron transfer flavoprotein FAD-binding domain ABC08_04810 PF01012 Electron transfer flavoprotein domain ABC08_04815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_04815 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABC08_04815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_04815 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_04820 PF00578 AhpC/TSA family ABC08_04820 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABC08_04835 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_04840 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_04845 PF12857 TOBE-like domain ABC08_04845 PF17850 CysA C-terminal regulatory domain ABC08_04845 PF00005 ABC transporter ABC08_04855 PF01507 Phosphoadenosine phosphosulfate reductase family ABC08_04865 PF04055 Radical SAM superfamily ABC08_04880 PF01245 Ribosomal protein L19 ABC08_04885 PF00293 NUDIX domain ABC08_04895 PF00248 Aldo/keto reductase family ABC08_04910 PF04345 Chorismate lyase ABC08_04915 PF00849 RNA pseudouridylate synthase ABC08_04915 PF01479 S4 domain ABC08_04920 PF03466 LysR substrate binding domain ABC08_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_04930 PF00873 AcrB/AcrD/AcrF family ABC08_04935 PF02321 Outer membrane efflux protein ABC08_04945 PF02630 SCO1/SenC ABC08_04950 PF01432 Peptidase family M3 ABC08_04955 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABC08_04955 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABC08_04960 PF00072 Response regulator receiver domain ABC08_04960 PF00196 Bacterial regulatory proteins, luxR family ABC08_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_04965 PF00512 His Kinase A (phospho-acceptor) domain ABC08_04965 PF00989 PAS fold ABC08_04970 PF17831 Pyruvate dehydrogenase E1 component middle domain ABC08_04970 PF00456 Transketolase, thiamine diphosphate binding domain ABC08_04975 PF02817 e3 binding domain ABC08_04975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABC08_04975 PF00364 Biotin-requiring enzyme ABC08_04980 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_04980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABC08_04985 PF00700 Bacterial flagellin C-terminal helical region ABC08_04985 PF00669 Bacterial flagellin N-terminal helical region ABC08_04995 PF04452 RNA methyltransferase ABC08_05000 PF00456 Transketolase, thiamine diphosphate binding domain ABC08_05000 PF02780 Transketolase, C-terminal domain ABC08_05000 PF02779 Transketolase, pyrimidine binding domain ABC08_05005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABC08_05005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABC08_05010 PF00162 Phosphoglycerate kinase ABC08_05020 PF00871 Acetokinase family ABC08_05025 PF01515 Phosphate acetyl/butaryl transferase ABC08_05030 PF11339 Protein of unknown function (DUF3141) ABC08_05035 PF14834 Glutathione S-transferase, C-terminal domain ABC08_05035 PF02798 Glutathione S-transferase, N-terminal domain ABC08_05055 PF00226 DnaJ domain ABC08_05055 PF01556 DnaJ C terminal domain ABC08_05065 PF03591 AzlC protein ABC08_05075 PF00994 Probable molybdopterin binding domain ABC08_05085 PF01551 Peptidase family M23 ABC08_05085 PF01476 LysM domain ABC08_05085 PF08525 Opacity-associated protein A N-terminal motif ABC08_05095 PF01176 Translation initiation factor 1A / IF-1 ABC08_05105 PF04545 Sigma-70, region 4 ABC08_05105 PF04539 Sigma-70 region 3 ABC08_05105 PF04542 Sigma-70 region 2 ABC08_05110 PF05247 Flagellar transcriptional activator (FlhD) ABC08_05115 PF05280 Flagellar transcriptional activator (FlhC) ABC08_05120 PF01618 MotA/TolQ/ExbB proton channel family ABC08_05125 PF00691 OmpA family ABC08_05125 PF13677 Membrane MotB of proton-channel complex MotA/MotB ABC08_05130 PF00072 Response regulator receiver domain ABC08_05135 PF01584 CheW-like domain ABC08_05135 PF01627 Hpt domain ABC08_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_05135 PF09078 CheY binding ABC08_05135 PF02895 Signal transducing histidine kinase, homodimeric domain ABC08_05140 PF01584 CheW-like domain ABC08_05145 PF00672 HAMP domain ABC08_05145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABC08_05145 PF02203 Tar ligand binding domain homologue ABC08_05155 PF01339 CheB methylesterase ABC08_05155 PF00072 Response regulator receiver domain ABC08_05160 PF00072 Response regulator receiver domain ABC08_05165 PF04344 Chemotaxis phosphatase, CheZ ABC08_05190 PF00248 Aldo/keto reductase family ABC08_05195 PF00795 Carbon-nitrogen hydrolase ABC08_05200 PF03471 Transporter associated domain ABC08_05200 PF00571 CBS domain ABC08_05205 PF02130 Uncharacterized protein family UPF0054 ABC08_05210 PF02562 PhoH-like protein ABC08_05215 PF01938 TRAM domain ABC08_05215 PF00919 Uncharacterized protein family UPF0004 ABC08_05215 PF04055 Radical SAM superfamily ABC08_05230 PF07549 SecD/SecF GG Motif ABC08_05230 PF02355 Protein export membrane protein ABC08_05235 PF13721 SecD export protein N-terminal TM region ABC08_05235 PF02355 Protein export membrane protein ABC08_05235 PF07549 SecD/SecF GG Motif ABC08_05240 PF02699 Preprotein translocase subunit ABC08_05245 PF01702 Queuine tRNA-ribosyltransferase ABC08_05250 PF02547 Queuosine biosynthesis protein ABC08_05255 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ABC08_05285 PF10414 Sirohaem synthase dimerisation region ABC08_05285 PF14824 Sirohaem biosynthesis protein central ABC08_05285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABC08_05310 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABC08_05315 PF01464 Transglycosylase SLT domain ABC08_05315 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ABC08_05320 PF00155 Aminotransferase class I and II ABC08_05330 PF01515 Phosphate acetyl/butaryl transferase ABC08_05330 PF03949 Malic enzyme, NAD binding domain ABC08_05330 PF00390 Malic enzyme, N-terminal domain ABC08_05340 PF01337 Barstar (barnase inhibitor) ABC08_05355 PF00005 ABC transporter ABC08_05360 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_05365 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_05370 PF12849 PBP superfamily domain ABC08_05375 PF13089 Polyphosphate kinase N-terminal domain ABC08_05375 PF02503 Polyphosphate kinase middle domain ABC08_05375 PF17941 Polyphosphate kinase C-terminal domain 1 ABC08_05375 PF13090 Polyphosphate kinase C-terminal domain 2 ABC08_05380 PF02541 Ppx/GppA phosphatase family ABC08_05390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABC08_05390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABC08_05390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABC08_05390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABC08_05395 PF00809 Pterin binding enzyme ABC08_05400 PF17862 AAA+ lid domain ABC08_05400 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_05400 PF01434 Peptidase family M41 ABC08_05400 PF06480 FtsH Extracellular ABC08_05405 PF01728 FtsJ-like methyltransferase ABC08_05410 PF01985 CRS1 / YhbY (CRM) domain ABC08_05430 PF01636 Phosphotransferase enzyme family ABC08_05435 PF01207 Dihydrouridine synthase (Dus) ABC08_05450 PF03631 Virulence factor BrkB ABC08_05460 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABC08_05465 PF00486 Transcriptional regulatory protein, C terminal ABC08_05465 PF00072 Response regulator receiver domain ABC08_05470 PF07689 KaiB domain ABC08_05470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_05470 PF00512 His Kinase A (phospho-acceptor) domain ABC08_05480 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_05480 PF00005 ABC transporter ABC08_05500 PF00005 ABC transporter ABC08_05505 PF00501 AMP-binding enzyme ABC08_05510 PF17932 Tetracyclin repressor-like, C-terminal domain ABC08_05510 PF00440 Bacterial regulatory proteins, tetR family ABC08_05520 PF00152 tRNA synthetases class II (D, K and N) ABC08_05520 PF01336 OB-fold nucleic acid binding domain ABC08_05525 PF00106 short chain dehydrogenase ABC08_05530 PF03462 PCRF domain ABC08_05530 PF00472 RF-1 domain ABC08_05535 PF17768 RecJ OB domain ABC08_05535 PF02272 DHHA1 domain ABC08_05535 PF01368 DHH family ABC08_05545 PF02687 FtsX-like permease family ABC08_05545 PF12704 MacB-like periplasmic core domain ABC08_05550 PF00005 ABC transporter ABC08_05555 PF01026 TatD related DNase ABC08_05590 PF02811 PHP domain ABC08_05595 PF01272 Transcription elongation factor, GreA/GreB, C-term ABC08_05595 PF03449 Transcription elongation factor, N-terminal ABC08_05605 PF16970 Type-1 fimbrial protein, A ABC08_05610 PF01515 Phosphate acetyl/butaryl transferase ABC08_05610 PF03949 Malic enzyme, NAD binding domain ABC08_05610 PF00390 Malic enzyme, N-terminal domain ABC08_05615 PF00456 Transketolase, thiamine diphosphate binding domain ABC08_05615 PF17831 Pyruvate dehydrogenase E1 component middle domain ABC08_05620 PF01037 Lrp/AsnC ligand binding domain ABC08_05625 PF03169 OPT oligopeptide transporter protein ABC08_05630 PF03169 OPT oligopeptide transporter protein ABC08_05635 PF16870 2-oxoglutarate dehydrogenase C-terminal ABC08_05635 PF00676 Dehydrogenase E1 component ABC08_05635 PF16078 2-oxoglutarate dehydrogenase N-terminus ABC08_05635 PF02779 Transketolase, pyrimidine binding domain ABC08_05640 PF00364 Biotin-requiring enzyme ABC08_05640 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABC08_05640 PF02817 e3 binding domain ABC08_05645 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_05645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABC08_05650 PF03969 AFG1-like ATPase ABC08_05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_05660 PF03466 LysR substrate binding domain ABC08_05670 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_05690 PF00579 tRNA synthetases class I (W and Y) ABC08_05695 PF09371 Tex-like protein N-terminal domain ABC08_05695 PF00575 S1 RNA binding domain ABC08_05695 PF17674 HHH domain ABC08_05695 PF16921 Tex protein YqgF-like domain ABC08_05700 PF04851 Type III restriction enzyme, res subunit ABC08_05700 PF13307 Helicase C-terminal domain ABC08_05705 PF13525 Outer membrane lipoprotein ABC08_05710 PF01479 S4 domain ABC08_05710 PF00849 RNA pseudouridylate synthase ABC08_05720 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ABC08_05725 PF00106 short chain dehydrogenase ABC08_05730 PF07879 PHB/PHA accumulation regulator DNA-binding domain ABC08_05730 PF05233 PHB accumulation regulatory domain ABC08_05735 PF10634 Fe2+ transport protein ABC08_05745 PF03239 Iron permease FTR1 family ABC08_05755 PF02567 Phenazine biosynthesis-like protein ABC08_05775 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_05780 PF13378 Enolase C-terminal domain-like ABC08_05780 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABC08_05785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_05785 PF03466 LysR substrate binding domain ABC08_05795 PF07690 Major Facilitator Superfamily ABC08_05810 PF17676 LD-carboxypeptidase C-terminal domain ABC08_05810 PF02016 LD-carboxypeptidase N-terminal domain ABC08_05820 PF03466 LysR substrate binding domain ABC08_05820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_05825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABC08_05825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABC08_05830 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_05855 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABC08_05875 PF00005 ABC transporter ABC08_05880 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_05885 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_05890 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_05925 PF02627 Carboxymuconolactone decarboxylase family ABC08_05930 PF12680 SnoaL-like domain ABC08_05930 PF08281 Sigma-70, region 4 ABC08_05930 PF04542 Sigma-70 region 2 ABC08_05940 PF12843 Putative quorum-sensing-regulated virulence factor ABC08_05945 PF00293 NUDIX domain ABC08_05960 PF00027 Cyclic nucleotide-binding domain ABC08_05960 PF13545 Crp-like helix-turn-helix domain ABC08_05965 PF10431 C-terminal, D2-small domain, of ClpB protein ABC08_05965 PF07724 AAA domain (Cdc48 subfamily) ABC08_05965 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_05965 PF17871 AAA lid domain ABC08_05965 PF02861 Clp amino terminal domain, pathogenicity island component ABC08_05980 PF03797 Autotransporter beta-domain ABC08_05980 PF03212 Pertactin ABC08_05995 PF09370 Phosphoenolpyruvate hydrolase-like ABC08_06005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_06005 PF03466 LysR substrate binding domain ABC08_06010 PF07969 Amidohydrolase family ABC08_06020 PF00175 Oxidoreductase NAD-binding domain ABC08_06020 PF00258 Flavodoxin ABC08_06020 PF00667 FAD binding domain ABC08_06025 PF02424 ApbE family ABC08_06045 PF00005 ABC transporter ABC08_06050 PF01061 ABC-2 type transporter ABC08_06060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABC08_06065 PF01593 Flavin containing amine oxidoreductase ABC08_06065 PF01593 Flavin containing amine oxidoreductase ABC08_06080 PF00842 Alanine racemase, C-terminal domain ABC08_06080 PF01168 Alanine racemase, N-terminal domain ABC08_06100 PF04542 Sigma-70 region 2 ABC08_06100 PF04545 Sigma-70, region 4 ABC08_06105 PF00092 von Willebrand factor type A domain ABC08_06105 PF12450 von Willebrand factor ABC08_06105 PF12034 Domain of unknown function (DUF3520) ABC08_06110 PF18073 Rubredoxin metal binding domain ABC08_06125 PF01554 MatE ABC08_06135 PF01197 Ribosomal protein L31 ABC08_06140 PF03301 Tryptophan 2,3-dioxygenase ABC08_06145 PF04199 Putative cyclase ABC08_06150 PF04002 RadC-like JAB domain ABC08_06155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABC08_06160 PF02401 LytB protein ABC08_06165 PF14497 Glutathione S-transferase, C-terminal domain ABC08_06165 PF02798 Glutathione S-transferase, N-terminal domain ABC08_06185 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABC08_06185 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABC08_06190 PF00881 Nitroreductase family ABC08_06195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_06195 PF03466 LysR substrate binding domain ABC08_06205 PF04079 Segregation and condensation complex subunit ScpB ABC08_06210 PF00849 RNA pseudouridylate synthase ABC08_06210 PF01479 S4 domain ABC08_06215 PF17384 RimP C-terminal SH3 domain ABC08_06215 PF02576 RimP N-terminal domain ABC08_06220 PF08529 NusA N-terminal domain ABC08_06220 PF13184 NusA-like KH domain ABC08_06225 PF00009 Elongation factor Tu GTP binding domain ABC08_06225 PF11987 Translation-initiation factor 2 ABC08_06225 PF08364 Bacterial translation initiation factor IF-2 associated region ABC08_06225 PF04760 Translation initiation factor IF-2, N-terminal region ABC08_06230 PF02033 Ribosome-binding factor A ABC08_06235 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABC08_06235 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABC08_06255 PF03641 Possible lysine decarboxylase ABC08_06260 PF01612 3'-5' exonuclease ABC08_06260 PF00476 DNA polymerase family A ABC08_06260 PF01367 5'-3' exonuclease, C-terminal SAM fold ABC08_06260 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABC08_06270 PF01738 Dienelactone hydrolase family ABC08_06275 PF02690 Na+/Pi-cotransporter ABC08_06280 PF03315 Serine dehydratase beta chain ABC08_06280 PF03313 Serine dehydratase alpha chain ABC08_06285 PF02677 Epoxyqueuosine reductase QueH ABC08_06290 PF03710 Glutamate-ammonia ligase adenylyltransferase ABC08_06290 PF08335 GlnD PII-uridylyltransferase ABC08_06300 PF07498 Rho termination factor, N-terminal domain ABC08_06300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABC08_06300 PF07497 Rho termination factor, RNA-binding domain ABC08_06305 PF00085 Thioredoxin ABC08_06310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_06310 PF01751 Toprim domain ABC08_06310 PF00986 DNA gyrase B subunit, carboxyl terminus ABC08_06310 PF00204 DNA gyrase B ABC08_06320 PF00521 DNA gyrase/topoisomerase IV, subunit A ABC08_06325 PF04235 Protein of unknown function (DUF418) ABC08_06350 PF01177 Asp/Glu/Hydantoin racemase ABC08_06355 PF00005 ABC transporter ABC08_06360 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_06360 PF00005 ABC transporter ABC08_06365 PF02653 Branched-chain amino acid transport system / permease component ABC08_06365 PF11862 Domain of unknown function (DUF3382) ABC08_06370 PF02653 Branched-chain amino acid transport system / permease component ABC08_06375 PF13458 Periplasmic binding protein ABC08_06385 PF02592 Putative vitamin uptake transporter ABC08_06390 PF03807 NADP oxidoreductase coenzyme F420-dependent ABC08_06390 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABC08_06395 PF13416 Bacterial extracellular solute-binding protein ABC08_06400 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_06405 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_06410 PF00005 ABC transporter ABC08_06410 PF17912 MalK OB fold domain ABC08_06415 PF13458 Periplasmic binding protein ABC08_06435 PF04241 Protein of unknown function (DUF423) ABC08_06450 PF03180 NLPA lipoprotein ABC08_06455 PF01070 FMN-dependent dehydrogenase ABC08_06460 PF02666 Phosphatidylserine decarboxylase ABC08_06475 PF03099 Biotin/lipoate A/B protein ligase family ABC08_06475 PF10437 Bacterial lipoate protein ligase C-terminus ABC08_06490 PF02798 Glutathione S-transferase, N-terminal domain ABC08_06490 PF00043 Glutathione S-transferase, C-terminal domain ABC08_06495 PF00255 Glutathione peroxidase ABC08_06515 PF02515 CoA-transferase family III ABC08_06520 PF03960 ArsC family ABC08_06525 PF00578 AhpC/TSA family ABC08_06545 PF07681 DoxX ABC08_06560 PF00248 Aldo/keto reductase family ABC08_06565 PF00582 Universal stress protein family ABC08_06580 PF00155 Aminotransferase class I and II ABC08_06580 PF00392 Bacterial regulatory proteins, gntR family ABC08_06585 PF01168 Alanine racemase, N-terminal domain ABC08_06590 PF08543 Phosphomethylpyrimidine kinase ABC08_06600 PF00128 Alpha amylase, catalytic domain ABC08_06615 PF11941 Domain of unknown function (DUF3459) ABC08_06615 PF00128 Alpha amylase, catalytic domain ABC08_06615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABC08_06620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABC08_06620 PF00128 Alpha amylase, catalytic domain ABC08_06625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABC08_06625 PF00128 Alpha amylase, catalytic domain ABC08_06625 PF02806 Alpha amylase, C-terminal all-beta domain ABC08_06630 PF00128 Alpha amylase, catalytic domain ABC08_06630 PF16657 Maltogenic Amylase, C-terminal domain ABC08_06635 PF11896 Domain of unknown function (DUF3416) ABC08_06635 PF00128 Alpha amylase, catalytic domain ABC08_06680 PF13091 PLD-like domain ABC08_06685 PF03372 Endonuclease/Exonuclease/phosphatase family ABC08_06690 PF03551 Transcriptional regulator PadR-like family ABC08_06700 PF12951 Passenger-associated-transport-repeat ABC08_06710 PF03466 LysR substrate binding domain ABC08_06710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_06720 PF03328 HpcH/HpaI aldolase/citrate lyase family ABC08_06725 PF00392 Bacterial regulatory proteins, gntR family ABC08_06725 PF07729 FCD domain ABC08_06735 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_06745 PF02515 CoA-transferase family III ABC08_06750 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_06755 PF00356 Bacterial regulatory proteins, lacI family ABC08_06760 PF00694 Aconitase C-terminal domain ABC08_06770 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_06775 PF13378 Enolase C-terminal domain-like ABC08_06780 PF02558 Ketopantoate reductase PanE/ApbA ABC08_06780 PF08546 Ketopantoate reductase PanE/ApbA C terminal ABC08_06790 PF00005 ABC transporter ABC08_06800 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_06810 PF01312 FlhB HrpN YscU SpaS Family ABC08_06830 PF04316 Anti-sigma-28 factor, FlgM ABC08_06840 PF00460 Flagella basal body rod protein ABC08_06845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABC08_06845 PF00460 Flagella basal body rod protein ABC08_06850 PF13861 FlgD Tudor-like domain ABC08_06850 PF13860 FlgD Ig-like domain ABC08_06850 PF03963 Flagellar hook capping protein - N-terminal region ABC08_06855 PF07559 Flagellar basal body protein FlaE ABC08_06855 PF00460 Flagella basal body rod protein ABC08_06855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABC08_06860 PF00460 Flagella basal body rod protein ABC08_06860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABC08_06865 PF00460 Flagella basal body rod protein ABC08_06865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABC08_06870 PF02107 Flagellar L-ring protein ABC08_06875 PF02119 Flagellar P-ring protein ABC08_06880 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ABC08_06880 PF10135 Rod binding protein ABC08_06885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABC08_06885 PF00460 Flagella basal body rod protein ABC08_06890 PF00669 Bacterial flagellin N-terminal helical region ABC08_06895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABC08_06895 PF02203 Tar ligand binding domain homologue ABC08_06895 PF00672 HAMP domain ABC08_06900 PF00672 HAMP domain ABC08_06900 PF02203 Tar ligand binding domain homologue ABC08_06900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABC08_06905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABC08_06905 PF08447 PAS fold ABC08_06915 PF01311 Bacterial export proteins, family 1 ABC08_06920 PF01313 Bacterial export proteins, family 3 ABC08_06925 PF00813 FliP family ABC08_06930 PF04347 Flagellar biosynthesis protein, FliO ABC08_06935 PF16973 Flagellar motor switch protein FliN N-terminal ABC08_06935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABC08_06940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABC08_06940 PF02154 Flagellar motor switch protein FliM ABC08_06945 PF03748 Flagellar basal body-associated protein FliL ABC08_06970 PF18269 T3SS EscN ATPase C-terminal domain ABC08_06970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABC08_06975 PF02108 Flagellar assembly protein FliH ABC08_06980 PF01706 FliG C-terminal domain ABC08_06980 PF14841 FliG middle domain ABC08_06980 PF14842 FliG N-terminal domain ABC08_06985 PF08345 Flagellar M-ring protein C-terminal ABC08_06985 PF01514 Secretory protein of YscJ/FliF family ABC08_06990 PF02049 Flagellar hook-basal body complex protein FliE ABC08_07000 PF01312 FlhB HrpN YscU SpaS Family ABC08_07020 PF02561 Flagellar protein FliS ABC08_07025 PF07196 Flagellin hook IN motif ABC08_07025 PF07195 Flagellar hook-associated protein 2 C-terminus ABC08_07025 PF02465 Flagellar hook-associated protein 2 N-terminus ABC08_07035 PF08245 Mur ligase middle domain ABC08_07035 PF02875 Mur ligase family, glutamate ligase domain ABC08_07050 PF00156 Phosphoribosyl transferase domain ABC08_07065 PF08335 GlnD PII-uridylyltransferase ABC08_07065 PF01909 Nucleotidyltransferase domain ABC08_07065 PF01966 HD domain ABC08_07070 PF00557 Metallopeptidase family M24 ABC08_07075 PF00318 Ribosomal protein S2 ABC08_07080 PF00889 Elongation factor TS ABC08_07085 PF00696 Amino acid kinase family ABC08_07090 PF01765 Ribosome recycling factor ABC08_07095 PF01255 Putative undecaprenyl diphosphate synthase ABC08_07105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABC08_07105 PF13288 DXP reductoisomerase C-terminal domain ABC08_07105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABC08_07110 PF02163 Peptidase family M50 ABC08_07110 PF17820 PDZ domain ABC08_07115 PF07244 Surface antigen variable number repeat ABC08_07115 PF01103 Surface antigen ABC08_07120 PF03938 Outer membrane protein (OmpH-like) ABC08_07125 PF00132 Bacterial transferase hexapeptide (six repeats) ABC08_07125 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABC08_07130 PF07977 FabA-like domain ABC08_07135 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABC08_07135 PF00132 Bacterial transferase hexapeptide (six repeats) ABC08_07140 PF02684 Lipid-A-disaccharide synthetase ABC08_07145 PF01351 Ribonuclease HII ABC08_07150 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABC08_07150 PF00588 SpoU rRNA Methylase family ABC08_07155 PF03618 Kinase/pyrophosphorylase ABC08_07160 PF00391 PEP-utilising enzyme, mobile domain ABC08_07160 PF02896 PEP-utilising enzyme, TIM barrel domain ABC08_07160 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABC08_07165 PF00958 GMP synthase C terminal domain ABC08_07165 PF00117 Glutamine amidotransferase class-I ABC08_07180 PF01145 SPFH domain / Band 7 family ABC08_07180 PF16200 C-terminal region of band_7 ABC08_07185 PF08448 PAS fold ABC08_07185 PF00990 Diguanylate cyclase, GGDEF domain ABC08_07190 PF01668 SmpB protein ABC08_07200 PF03364 Polyketide cyclase / dehydrase and lipid transport ABC08_07205 PF03658 RnfH family Ubiquitin ABC08_07210 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_07210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_07210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_07215 PF00378 Enoyl-CoA hydratase/isomerase ABC08_07220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABC08_07220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABC08_07245 PF00923 Transaldolase/Fructose-6-phosphate aldolase ABC08_07250 PF00117 Glutamine amidotransferase class-I ABC08_07250 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABC08_07255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABC08_07255 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABC08_07255 PF02142 MGS-like domain ABC08_07265 PF00300 Histidine phosphatase superfamily (branch 1) ABC08_07275 PF00005 ABC transporter ABC08_07275 PF08402 TOBE domain ABC08_07280 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_07295 PF08448 PAS fold ABC08_07295 PF00990 Diguanylate cyclase, GGDEF domain ABC08_07295 PF00563 EAL domain ABC08_07295 PF08447 PAS fold ABC08_07300 PF01264 Chorismate synthase ABC08_07305 PF01435 Peptidase family M48 ABC08_07310 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ABC08_07315 PF03454 MoeA C-terminal region (domain IV) ABC08_07315 PF00994 Probable molybdopterin binding domain ABC08_07315 PF03453 MoeA N-terminal region (domain I and II) ABC08_07320 PF12804 MobA-like NTP transferase domain ABC08_07325 PF10609 NUBPL iron-transfer P-loop NTPase ABC08_07355 PF00384 Molybdopterin oxidoreductase ABC08_07355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABC08_07355 PF01568 Molydopterin dinucleotide binding domain ABC08_07390 PF00005 ABC transporter ABC08_07395 PF12849 PBP superfamily domain ABC08_07400 PF00330 Aconitase family (aconitate hydratase) ABC08_07405 PF00694 Aconitase C-terminal domain ABC08_07410 PF00180 Isocitrate/isopropylmalate dehydrogenase ABC08_07415 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABC08_07415 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABC08_07425 PF01416 tRNA pseudouridine synthase ABC08_07430 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_07440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_07445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABC08_07460 PF03883 Peroxide stress protein YaaA ABC08_07480 PF17158 Membrane-associated sensor, integral membrane domain ABC08_07480 PF00990 Diguanylate cyclase, GGDEF domain ABC08_07490 PF04055 Radical SAM superfamily ABC08_07490 PF06969 HemN C-terminal domain ABC08_07500 PF00196 Bacterial regulatory proteins, luxR family ABC08_07505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABC08_07505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABC08_07505 PF02824 TGS domain ABC08_07505 PF03129 Anticodon binding domain ABC08_07510 PF00707 Translation initiation factor IF-3, C-terminal domain ABC08_07510 PF05198 Translation initiation factor IF-3, N-terminal domain ABC08_07515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ABC08_07515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ABC08_07525 PF00381 PTS HPr component phosphorylation site ABC08_07530 PF00391 PEP-utilising enzyme, mobile domain ABC08_07530 PF05524 PEP-utilising enzyme, N-terminal ABC08_07530 PF02896 PEP-utilising enzyme, TIM barrel domain ABC08_07540 PF02423 Ornithine cyclodeaminase/mu-crystallin family ABC08_07550 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_07555 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_07560 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_07565 PF00005 ABC transporter ABC08_07580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC08_07580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABC08_07590 PF02293 AmiS/UreI family transporter ABC08_07595 PF03069 Acetamidase/Formamidase family ABC08_07610 PF01116 Fructose-bisphosphate aldolase class-II ABC08_07620 PF01259 SAICAR synthetase ABC08_07625 PF15723 Motility quorum-sensing regulator, toxin of MqsA ABC08_07630 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA ABC08_07635 PF02600 Disulfide bond formation protein DsbB ABC08_07640 PF00731 AIR carboxylase ABC08_07645 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ABC08_07645 PF02222 ATP-grasp domain ABC08_07650 PF03481 Putative GTP-binding controlling metal-binding ABC08_07650 PF01300 Telomere recombination ABC08_07655 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_07660 PF01614 Bacterial transcriptional regulator ABC08_07660 PF09339 IclR helix-turn-helix domain ABC08_07665 PF00491 Arginase family ABC08_07670 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_07675 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_07680 PF00005 ABC transporter ABC08_07685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_07685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_07695 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_07695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_07695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_07700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_07700 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_07700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_07705 PF03466 LysR substrate binding domain ABC08_07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_07710 PF02899 Phage integrase, N-terminal SAM-like domain ABC08_07710 PF00589 Phage integrase family ABC08_07715 PF04073 Aminoacyl-tRNA editing domain ABC08_07720 PF01174 SNO glutamine amidotransferase family ABC08_07735 PF00768 D-alanyl-D-alanine carboxypeptidase ABC08_07755 PF13361 UvrD-like helicase C-terminal domain ABC08_07755 PF00580 UvrD/REP helicase N-terminal domain ABC08_07755 PF12705 PD-(D/E)XK nuclease superfamily ABC08_07760 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ABC08_07760 PF12169 DNA polymerase III subunits gamma and tau domain III ABC08_07760 PF12170 DNA polymerase III tau subunit V interacting with alpha ABC08_07765 PF02575 YbaB/EbfC DNA-binding family ABC08_07770 PF02132 RecR protein ABC08_07770 PF13662 Toprim domain ABC08_07790 PF04228 Putative neutral zinc metallopeptidase ABC08_07795 PF01300 Telomere recombination ABC08_07830 PF03358 NADPH-dependent FMN reductase ABC08_07835 PF07311 Dodecin ABC08_07840 PF05188 MutS domain II ABC08_07840 PF05192 MutS domain III ABC08_07840 PF00488 MutS domain V ABC08_07840 PF05190 MutS family domain IV ABC08_07840 PF01624 MutS domain I ABC08_07845 PF08007 Cupin superfamily protein ABC08_07850 PF16970 Type-1 fimbrial protein, A ABC08_07855 PF06804 NlpB/DapX lipoprotein ABC08_07860 PF00701 Dihydrodipicolinate synthetase family ABC08_07875 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_07880 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_07885 PF00005 ABC transporter ABC08_07890 PF02824 TGS domain ABC08_07890 PF04607 Region found in RelA / SpoT proteins ABC08_07890 PF13291 ACT domain ABC08_07895 PF01192 RNA polymerase Rpb6 ABC08_07900 PF00625 Guanylate kinase ABC08_07905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABC08_07910 PF00034 Cytochrome c ABC08_07920 PF00877 NlpC/P60 family ABC08_07925 PF01048 Phosphorylase superfamily ABC08_07925 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ABC08_07945 PF03755 YicC-like family, N-terminal region ABC08_07945 PF08340 Domain of unknown function (DUF1732) ABC08_07950 PF01138 3' exoribonuclease family, domain 1 ABC08_07950 PF03725 3' exoribonuclease family, domain 2 ABC08_07960 PF03466 LysR substrate binding domain ABC08_07960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_07965 PF00672 HAMP domain ABC08_07965 PF00990 Diguanylate cyclase, GGDEF domain ABC08_07965 PF17154 Gammaproteobacterial periplasmic sensor domain ABC08_07965 PF00563 EAL domain ABC08_07970 PF01725 Ham1 family ABC08_07980 PF06969 HemN C-terminal domain ABC08_07980 PF04055 Radical SAM superfamily ABC08_07990 PF00512 His Kinase A (phospho-acceptor) domain ABC08_07990 PF00989 PAS fold ABC08_07990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_07995 PF00072 Response regulator receiver domain ABC08_07995 PF02954 Bacterial regulatory protein, Fis family ABC08_07995 PF00158 Sigma-54 interaction domain ABC08_08000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08000 PF03466 LysR substrate binding domain ABC08_08005 PF17954 Quercetinase C-terminal cupin domain ABC08_08005 PF02678 Pirin ABC08_08010 PF02678 Pirin ABC08_08010 PF05726 Pirin C-terminal cupin domain ABC08_08020 PF00005 ABC transporter ABC08_08020 PF08402 TOBE domain ABC08_08025 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_08035 PF00970 Oxidoreductase FAD-binding domain ABC08_08035 PF00175 Oxidoreductase NAD-binding domain ABC08_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08040 PF03466 LysR substrate binding domain ABC08_08050 PF00248 Aldo/keto reductase family ABC08_08060 PF01042 Endoribonuclease L-PSP ABC08_08065 PF17191 RecG wedge domain ABC08_08065 PF00271 Helicase conserved C-terminal domain ABC08_08065 PF00270 DEAD/DEAH box helicase ABC08_08070 PF03466 LysR substrate binding domain ABC08_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08075 PF03466 LysR substrate binding domain ABC08_08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08080 PF00171 Aldehyde dehydrogenase family ABC08_08085 PF00210 Ferritin-like domain ABC08_08110 PF00005 ABC transporter ABC08_08120 PF00534 Glycosyl transferases group 1 ABC08_08130 PF02563 Polysaccharide biosynthesis/export protein ABC08_08135 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABC08_08135 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABC08_08135 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABC08_08140 PF01370 NAD dependent epimerase/dehydratase family ABC08_08145 PF05159 Capsule polysaccharide biosynthesis protein ABC08_08150 PF05159 Capsule polysaccharide biosynthesis protein ABC08_08160 PF00106 short chain dehydrogenase ABC08_08185 PF00005 ABC transporter ABC08_08190 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_08190 PF00005 ABC transporter ABC08_08205 PF03741 Integral membrane protein TerC family ABC08_08215 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_08230 PF07726 ATPase family associated with various cellular activities (AAA) ABC08_08230 PF17863 AAA lid domain ABC08_08260 PF00884 Sulfatase ABC08_08285 PF00196 Bacterial regulatory proteins, luxR family ABC08_08285 PF00072 Response regulator receiver domain ABC08_08290 PF00082 Subtilase family ABC08_08290 PF12951 Passenger-associated-transport-repeat ABC08_08290 PF03797 Autotransporter beta-domain ABC08_08295 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA ABC08_08305 PF02798 Glutathione S-transferase, N-terminal domain ABC08_08305 PF00043 Glutathione S-transferase, C-terminal domain ABC08_08320 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_08330 PF01070 FMN-dependent dehydrogenase ABC08_08335 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABC08_08350 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_08355 PF03466 LysR substrate binding domain ABC08_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08360 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_08385 PF03358 NADPH-dependent FMN reductase ABC08_08410 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_08420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08420 PF03466 LysR substrate binding domain ABC08_08440 PF00361 Proton-conducting membrane transporter ABC08_08440 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ABC08_08440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABC08_08440 PF13244 Domain of unknown function (DUF4040) ABC08_08445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC08_08450 PF00361 Proton-conducting membrane transporter ABC08_08455 PF01899 Na+/H+ ion antiporter subunit ABC08_08460 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABC08_08485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABC08_08490 PF02016 LD-carboxypeptidase N-terminal domain ABC08_08490 PF17676 LD-carboxypeptidase C-terminal domain ABC08_08495 PF00378 Enoyl-CoA hydratase/isomerase ABC08_08500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_08510 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_08515 PF12848 ABC transporter ABC08_08515 PF00005 ABC transporter ABC08_08520 PF00005 ABC transporter ABC08_08550 PF00042 Globin ABC08_08550 PF00970 Oxidoreductase FAD-binding domain ABC08_08550 PF00175 Oxidoreductase NAD-binding domain ABC08_08555 PF02082 Transcriptional regulator ABC08_08560 PF01266 FAD dependent oxidoreductase ABC08_08575 PF01571 Aminomethyltransferase folate-binding domain ABC08_08580 PF02618 YceG-like family ABC08_08585 PF02223 Thymidylate kinase ABC08_08590 PF12169 DNA polymerase III subunits gamma and tau domain III ABC08_08595 PF01026 TatD related DNase ABC08_08610 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_08620 PF00005 ABC transporter ABC08_08630 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABC08_08630 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABC08_08640 PF01546 Peptidase family M20/M25/M40 ABC08_08640 PF07687 Peptidase dimerisation domain ABC08_08645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_08645 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_08645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_08655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_08665 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ABC08_08665 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_08670 PF00392 Bacterial regulatory proteins, gntR family ABC08_08670 PF07729 FCD domain ABC08_08700 PF01425 Amidase ABC08_08705 PF07286 Protein of unknown function (DUF1445) ABC08_08715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_08715 PF00512 His Kinase A (phospho-acceptor) domain ABC08_08715 PF01627 Hpt domain ABC08_08715 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_08715 PF00989 PAS fold ABC08_08715 PF00072 Response regulator receiver domain ABC08_08720 PF00072 Response regulator receiver domain ABC08_08720 PF00196 Bacterial regulatory proteins, luxR family ABC08_08725 PF05860 haemagglutination activity domain ABC08_08725 PF13332 Hemagglutinin repeat ABC08_08725 PF05594 Haemagluttinin repeat ABC08_08725 PF13018 Extended Signal Peptide of Type V secretion system ABC08_08730 PF16970 Type-1 fimbrial protein, A ABC08_08735 PF02753 Pili assembly chaperone PapD, C-terminal domain ABC08_08735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABC08_08740 PF00577 Outer membrane usher protein ABC08_08740 PF13954 PapC N-terminal domain ABC08_08740 PF13953 PapC C-terminal domain ABC08_08745 PF00419 Fimbrial protein ABC08_08750 PF17287 POTRA domain ABC08_08750 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABC08_08750 PF08479 POTRA domain, ShlB-type ABC08_08765 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_08800 PF01968 Hydantoinase/oxoprolinase ABC08_08800 PF05378 Hydantoinase/oxoprolinase N-terminal region ABC08_08815 PF00924 Mechanosensitive ion channel ABC08_08815 PF05552 Conserved TM helix ABC08_08825 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_08830 PF00588 SpoU rRNA Methylase family ABC08_08835 PF00459 Inositol monophosphatase family ABC08_08840 PF03741 Integral membrane protein TerC family ABC08_08840 PF03471 Transporter associated domain ABC08_08845 PF02673 Bacitracin resistance protein BacA ABC08_08850 PF00149 Calcineurin-like phosphoesterase ABC08_08855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC08_08865 PF09190 DALR domain ABC08_08865 PF01406 tRNA synthetases class I (C) catalytic domain ABC08_08870 PF12833 Helix-turn-helix domain ABC08_08870 PF00730 HhH-GPD superfamily base excision DNA repair protein ABC08_08870 PF06029 AlkA N-terminal domain ABC08_08870 PF02805 Metal binding domain of Ada ABC08_08875 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABC08_08885 PF09179 TilS substrate binding domain ABC08_08885 PF01171 PP-loop family ABC08_08890 PF13840 ACT domain ABC08_08890 PF01842 ACT domain ABC08_08890 PF00696 Amino acid kinase family ABC08_08915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_08915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_08920 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ABC08_08925 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_08930 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_08935 PF00561 alpha/beta hydrolase fold ABC08_08940 PF03447 Homoserine dehydrogenase, NAD binding domain ABC08_08940 PF01958 Domain of unknown function DUF108 ABC08_08955 PF03466 LysR substrate binding domain ABC08_08955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_08975 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_08980 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_08985 PF08402 TOBE domain ABC08_08985 PF00005 ABC transporter ABC08_08995 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_08995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABC08_09000 PF09339 IclR helix-turn-helix domain ABC08_09000 PF01614 Bacterial transcriptional regulator ABC08_09005 PF13380 CoA binding domain ABC08_09010 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_09015 PF01042 Endoribonuclease L-PSP ABC08_09040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABC08_09050 PF00535 Glycosyl transferase family 2 ABC08_09055 PF14883 Hypothetical glycosyl hydrolase family 13 ABC08_09055 PF01522 Polysaccharide deacetylase ABC08_09075 PF12802 MarR family ABC08_09090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABC08_09090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABC08_09090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABC08_09090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABC08_09095 PF00342 Phosphoglucose isomerase ABC08_09100 PF00132 Bacterial transferase hexapeptide (six repeats) ABC08_09110 PF02146 Sir2 family ABC08_09115 PF00459 Inositol monophosphatase family ABC08_09120 PF00171 Aldehyde dehydrogenase family ABC08_09125 PF00202 Aminotransferase class-III ABC08_09140 PF00580 UvrD/REP helicase N-terminal domain ABC08_09140 PF13361 UvrD-like helicase C-terminal domain ABC08_09145 PF01544 CorA-like Mg2+ transporter protein ABC08_09155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_09160 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_09165 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_09165 PF12911 N-terminal TM domain of oligopeptide transport permease C ABC08_09170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_09170 PF00005 ABC transporter ABC08_09175 PF01047 MarR family ABC08_09190 PF08479 POTRA domain, ShlB-type ABC08_09190 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABC08_09195 PF00563 EAL domain ABC08_09195 PF00990 Diguanylate cyclase, GGDEF domain ABC08_09195 PF03707 Bacterial signalling protein N terminal repeat ABC08_09225 PF00263 Bacterial type II and III secretion system protein ABC08_09225 PF04972 BON domain ABC08_09225 PF13629 Pilus formation protein N terminal region ABC08_09265 PF00072 Response regulator receiver domain ABC08_09265 PF02954 Bacterial regulatory protein, Fis family ABC08_09265 PF00158 Sigma-54 interaction domain ABC08_09280 PF04542 Sigma-70 region 2 ABC08_09280 PF08281 Sigma-70, region 4 ABC08_09290 PF00034 Cytochrome c ABC08_09295 PF09285 Elongation factor P, C-terminal ABC08_09295 PF08207 Elongation factor P (EF-P) KOW-like domain ABC08_09295 PF01132 Elongation factor P (EF-P) OB domain ABC08_09310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABC08_09315 PF00330 Aconitase family (aconitate hydratase) ABC08_09315 PF00694 Aconitase C-terminal domain ABC08_09325 PF00593 TonB dependent receptor ABC08_09325 PF07715 TonB-dependent Receptor Plug Domain ABC08_09340 PF00691 OmpA family ABC08_09350 PF06434 Aconitate hydratase 2 N-terminus ABC08_09350 PF11791 Aconitate B N-terminal domain ABC08_09350 PF00330 Aconitase family (aconitate hydratase) ABC08_09375 PF00892 EamA-like transporter family ABC08_09380 PF01925 Sulfite exporter TauE/SafE ABC08_09395 PF03466 LysR substrate binding domain ABC08_09395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_09400 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABC08_09400 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABC08_09410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_09410 PF03466 LysR substrate binding domain ABC08_09455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_09455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_09460 PF01425 Amidase ABC08_09470 PF00171 Aldehyde dehydrogenase family ABC08_09485 PF00133 tRNA synthetases class I (I, L, M and V) ABC08_09485 PF09334 tRNA synthetases class I (M) ABC08_09485 PF13603 Leucyl-tRNA synthetase, Domain 2 ABC08_09485 PF08264 Anticodon-binding domain of tRNA ABC08_09490 PF07690 Major Facilitator Superfamily ABC08_09495 PF01047 MarR family ABC08_09515 PF01740 STAS domain ABC08_09515 PF00916 Sulfate permease family ABC08_09520 PF00471 Ribosomal protein L33 ABC08_09525 PF00830 Ribosomal L28 family ABC08_09530 PF07690 Major Facilitator Superfamily ABC08_09550 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_09555 PF00005 ABC transporter ABC08_09555 PF00571 CBS domain ABC08_09560 PF01361 Tautomerase enzyme ABC08_09565 PF02803 Thiolase, C-terminal domain ABC08_09565 PF00108 Thiolase, N-terminal domain ABC08_09575 PF00392 Bacterial regulatory proteins, gntR family ABC08_09575 PF07729 FCD domain ABC08_09585 PF00378 Enoyl-CoA hydratase/isomerase ABC08_09595 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_09600 PF00080 Copper/zinc superoxide dismutase (SODC) ABC08_09615 PF00005 ABC transporter ABC08_09620 PF03459 TOBE domain ABC08_09620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_09640 PF00529 HlyD membrane-fusion protein of T1SS ABC08_09640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABC08_09645 PF00873 AcrB/AcrD/AcrF family ABC08_09655 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABC08_09660 PF01648 4'-phosphopantetheinyl transferase superfamily ABC08_09665 PF00933 Glycosyl hydrolase family 3 N terminal domain ABC08_09670 PF08459 UvrC Helix-hairpin-helix N-terminal ABC08_09670 PF02151 UvrB/uvrC motif ABC08_09670 PF01541 GIY-YIG catalytic domain ABC08_09675 PF01066 CDP-alcohol phosphatidyltransferase ABC08_09690 PF14489 QueF-like protein ABC08_09690 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ABC08_09695 PF00463 Isocitrate lyase family ABC08_09715 PF02653 Branched-chain amino acid transport system / permease component ABC08_09720 PF13458 Periplasmic binding protein ABC08_09725 PF00355 Rieske [2Fe-2S] domain ABC08_09725 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABC08_09730 PF00866 Ring hydroxylating beta subunit ABC08_09735 PF00378 Enoyl-CoA hydratase/isomerase ABC08_09745 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_09750 PF02515 CoA-transferase family III ABC08_09755 PF07859 alpha/beta hydrolase fold ABC08_09760 PF14535 AMP-binding enzyme C-terminal domain ABC08_09760 PF00501 AMP-binding enzyme ABC08_09765 PF02803 Thiolase, C-terminal domain ABC08_09765 PF00108 Thiolase, N-terminal domain ABC08_09775 PF12228 Protein of unknown function (DUF3604) ABC08_09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_09780 PF03466 LysR substrate binding domain ABC08_09785 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_09805 PF01152 Bacterial-like globin ABC08_09840 PF01425 Amidase ABC08_09845 PF01425 Amidase ABC08_09855 PF01522 Polysaccharide deacetylase ABC08_09860 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_09885 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_09885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABC08_09910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_09910 PF03466 LysR substrate binding domain ABC08_09920 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_09920 PF01799 [2Fe-2S] binding domain ABC08_09925 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABC08_09935 PF12833 Helix-turn-helix domain ABC08_09935 PF06719 AraC-type transcriptional regulator N-terminus ABC08_09955 PF07690 Major Facilitator Superfamily ABC08_09970 PF00583 Acetyltransferase (GNAT) family ABC08_09980 PF00005 ABC transporter ABC08_09980 PF00664 ABC transporter transmembrane region ABC08_09990 PF02535 ZIP Zinc transporter ABC08_10005 PF00916 Sulfate permease family ABC08_10005 PF01740 STAS domain ABC08_10025 PF03625 Domain of unknown function DUF302 ABC08_10025 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABC08_10035 PF02805 Metal binding domain of Ada ABC08_10035 PF12833 Helix-turn-helix domain ABC08_10040 PF07237 Protein of unknown function (DUF1428) ABC08_10045 PF02567 Phenazine biosynthesis-like protein ABC08_10050 PF03466 LysR substrate binding domain ABC08_10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_10055 PF04286 Protein of unknown function (DUF445) ABC08_10070 PF00171 Aldehyde dehydrogenase family ABC08_10075 PF02954 Bacterial regulatory protein, Fis family ABC08_10075 PF01590 GAF domain ABC08_10075 PF00158 Sigma-54 interaction domain ABC08_10090 PF04172 LrgB-like family ABC08_10095 PF03788 LrgA family ABC08_10100 PF13649 Methyltransferase domain ABC08_10110 PF00155 Aminotransferase class I and II ABC08_10115 PF00202 Aminotransferase class-III ABC08_10150 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ABC08_10150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABC08_10155 PF12801 4Fe-4S binding domain ABC08_10155 PF13746 4Fe-4S dicluster domain ABC08_10155 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABC08_10180 PF00005 ABC transporter ABC08_10185 PF01061 ABC-2 type transporter ABC08_10190 PF01594 AI-2E family transporter ABC08_10220 PF04546 Sigma-70, non-essential region ABC08_10220 PF00140 Sigma-70 factor, region 1.2 ABC08_10220 PF04542 Sigma-70 region 2 ABC08_10220 PF04539 Sigma-70 region 3 ABC08_10220 PF04545 Sigma-70, region 4 ABC08_10220 PF03979 Sigma-70 factor, region 1.1 ABC08_10225 PF01807 CHC2 zinc finger ABC08_10225 PF10410 DnaB-helicase binding domain of primase ABC08_10225 PF08278 DNA primase DnaG DnaB-binding ABC08_10225 PF08275 DNA primase catalytic core, N-terminal domain ABC08_10230 PF01165 Ribosomal protein S21 ABC08_10240 PF00709 Adenylosuccinate synthetase ABC08_10245 PF13393 Histidyl-tRNA synthetase ABC08_10250 PF01145 SPFH domain / Band 7 family ABC08_10255 PF12221 Bacterial membrane protein N terminal ABC08_10255 PF01145 SPFH domain / Band 7 family ABC08_10260 PF16360 GTP-binding GTPase Middle Region ABC08_10260 PF13167 GTP-binding GTPase N-terminal ABC08_10260 PF01926 50S ribosome-binding GTPase ABC08_10265 PF17209 Hfq protein ABC08_10270 PF00155 Aminotransferase class I and II ABC08_10275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABC08_10275 PF01926 50S ribosome-binding GTPase ABC08_10280 PF13360 PQQ-like domain ABC08_10285 PF09976 Tetratricopeptide repeat-like domain ABC08_10290 PF03129 Anticodon binding domain ABC08_10290 PF13393 Histidyl-tRNA synthetase ABC08_10295 PF04551 GcpE protein ABC08_10305 PF04055 Radical SAM superfamily ABC08_10310 PF00334 Nucleoside diphosphate kinase ABC08_10315 PF00133 tRNA synthetases class I (I, L, M and V) ABC08_10315 PF10458 Valyl tRNA synthetase tRNA binding arm ABC08_10315 PF08264 Anticodon-binding domain of tRNA ABC08_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_10330 PF08521 Two-component sensor kinase N-terminal ABC08_10330 PF00512 His Kinase A (phospho-acceptor) domain ABC08_10350 PF00266 Aminotransferase class-V ABC08_10355 PF01746 tRNA (Guanine-1)-methyltransferase ABC08_10360 PF01782 RimM N-terminal domain ABC08_10365 PF00886 Ribosomal protein S16 ABC08_10375 PF01206 Sulfurtransferase TusA ABC08_10380 PF02272 DHHA1 domain ABC08_10380 PF01411 tRNA synthetases class II (A) ABC08_10380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABC08_10425 PF01425 Amidase ABC08_10430 PF00005 ABC transporter ABC08_10430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_10435 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_10440 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_10445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_10460 PF03466 LysR substrate binding domain ABC08_10460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_10465 PF13416 Bacterial extracellular solute-binding protein ABC08_10470 PF01266 FAD dependent oxidoreductase ABC08_10475 PF00970 Oxidoreductase FAD-binding domain ABC08_10475 PF00175 Oxidoreductase NAD-binding domain ABC08_10475 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_10480 PF02261 Aspartate decarboxylase ABC08_10495 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABC08_10500 PF07005 Sugar-binding N-terminal domain ABC08_10500 PF17042 Nucleotide-binding C-terminal domain ABC08_10515 PF00378 Enoyl-CoA hydratase/isomerase ABC08_10525 PF02142 MGS-like domain ABC08_10530 PF04384 Iron-sulphur cluster assembly ABC08_10535 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_10540 PF00012 Hsp70 protein ABC08_10545 PF07743 HSCB C-terminal oligomerisation domain ABC08_10550 PF01521 Iron-sulphur cluster biosynthesis ABC08_10555 PF01592 NifU-like N terminal domain ABC08_10560 PF00266 Aminotransferase class-V ABC08_10565 PF02082 Transcriptional regulator ABC08_10570 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABC08_10575 PF17757 UvrB interaction domain ABC08_10575 PF02151 UvrB/uvrC motif ABC08_10575 PF12344 Ultra-violet resistance protein B ABC08_10575 PF04851 Type III restriction enzyme, res subunit ABC08_10575 PF00271 Helicase conserved C-terminal domain ABC08_10580 PF00155 Aminotransferase class I and II ABC08_10585 PF00717 Peptidase S24-like ABC08_10585 PF01726 LexA DNA binding domain ABC08_10590 PF03212 Pertactin ABC08_10590 PF03797 Autotransporter beta-domain ABC08_10610 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_10615 PF01144 Coenzyme A transferase ABC08_10620 PF01144 Coenzyme A transferase ABC08_10640 PF02803 Thiolase, C-terminal domain ABC08_10640 PF00108 Thiolase, N-terminal domain ABC08_10650 PF00378 Enoyl-CoA hydratase/isomerase ABC08_10660 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_10665 PF02515 CoA-transferase family III ABC08_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_10670 PF03466 LysR substrate binding domain ABC08_10675 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_10675 PF05362 Lon protease (S16) C-terminal proteolytic domain ABC08_10675 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABC08_10680 PF07724 AAA domain (Cdc48 subfamily) ABC08_10680 PF10431 C-terminal, D2-small domain, of ClpB protein ABC08_10680 PF06689 ClpX C4-type zinc finger ABC08_10685 PF00574 Clp protease ABC08_10690 PF05697 Bacterial trigger factor protein (TF) ABC08_10690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABC08_10690 PF05698 Bacterial trigger factor protein (TF) C-terminus ABC08_10695 PF03350 Uncharacterized protein family, UPF0114 ABC08_10700 PF00313 'Cold-shock' DNA-binding domain ABC08_10710 PF00313 'Cold-shock' DNA-binding domain ABC08_10745 PF14602 Hexapeptide repeat of succinyl-transferase ABC08_10745 PF00132 Bacterial transferase hexapeptide (six repeats) ABC08_10745 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ABC08_10750 PF01546 Peptidase family M20/M25/M40 ABC08_10750 PF07687 Peptidase dimerisation domain ABC08_10755 PF05175 Methyltransferase small domain ABC08_10760 PF00005 ABC transporter ABC08_10760 PF12848 ABC transporter ABC08_10765 PF07715 TonB-dependent Receptor Plug Domain ABC08_10770 PF13361 UvrD-like helicase C-terminal domain ABC08_10770 PF00580 UvrD/REP helicase N-terminal domain ABC08_10790 PF01189 16S rRNA methyltransferase RsmB/F ABC08_10790 PF01029 NusB family ABC08_10795 PF06574 FAD synthetase ABC08_10795 PF01687 Riboflavin kinase ABC08_10800 PF08264 Anticodon-binding domain of tRNA ABC08_10800 PF06827 Zinc finger found in FPG and IleRS ABC08_10800 PF00133 tRNA synthetases class I (I, L, M and V) ABC08_10805 PF01252 Signal peptidase (SPase) II ABC08_10810 PF02441 Flavoprotein ABC08_10810 PF04127 DNA / pantothenate metabolism flavoprotein ABC08_10820 PF01037 Lrp/AsnC ligand binding domain ABC08_10840 PF13406 Transglycosylase SLT domain ABC08_10845 PF04305 Protein of unknown function (DUF455) ABC08_10875 PF05532 CsbD-like ABC08_10885 PF04972 BON domain ABC08_10905 PF13472 GDSL-like Lipase/Acylhydrolase family ABC08_10910 PF13145 PPIC-type PPIASE domain ABC08_10915 PF03009 Glycerophosphoryl diester phosphodiesterase family ABC08_10920 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ABC08_10925 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_10925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABC08_10930 PF08534 Redoxin ABC08_10930 PF00462 Glutaredoxin ABC08_10940 PF09278 MerR, DNA binding ABC08_10940 PF00376 MerR family regulatory protein ABC08_10945 PF05958 tRNA (Uracil-5-)-methyltransferase ABC08_10965 PF01476 LysM domain ABC08_10965 PF01551 Peptidase family M23 ABC08_10975 PF01975 Survival protein SurE ABC08_10980 PF02660 Glycerol-3-phosphate acyltransferase ABC08_10990 PF00814 Glycoprotease family ABC08_10995 PF00860 Permease family ABC08_11005 PF00085 Thioredoxin ABC08_11010 PF01205 Uncharacterized protein family UPF0029 ABC08_11020 PF00583 Acetyltransferase (GNAT) family ABC08_11025 PF12802 MarR family ABC08_11035 PF00202 Aminotransferase class-III ABC08_11040 PF16868 NMT1-like family ABC08_11060 PF03797 Autotransporter beta-domain ABC08_11070 PF13091 PLD-like domain ABC08_11070 PF13396 Phospholipase_D-nuclease N-terminal ABC08_11075 PF01740 STAS domain ABC08_11080 PF13581 Histidine kinase-like ATPase domain ABC08_11085 PF00842 Alanine racemase, C-terminal domain ABC08_11085 PF01168 Alanine racemase, N-terminal domain ABC08_11095 PF07228 Stage II sporulation protein E (SpoIIE) ABC08_11095 PF00672 HAMP domain ABC08_11120 PF04542 Sigma-70 region 2 ABC08_11120 PF08281 Sigma-70, region 4 ABC08_11135 PF01312 FlhB HrpN YscU SpaS Family ABC08_11140 PF01311 Bacterial export proteins, family 1 ABC08_11145 PF01313 Bacterial export proteins, family 3 ABC08_11150 PF00813 FliP family ABC08_11155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABC08_11170 PF18269 T3SS EscN ATPase C-terminal domain ABC08_11170 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABC08_11170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABC08_11175 PF02108 Flagellar assembly protein FliH ABC08_11185 PF01514 Secretory protein of YscJ/FliF family ABC08_11250 PF00771 FHIPEP family ABC08_11280 PF03449 Transcription elongation factor, N-terminal ABC08_11280 PF01272 Transcription elongation factor, GreA/GreB, C-term ABC08_11285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABC08_11285 PF02203 Tar ligand binding domain homologue ABC08_11285 PF00672 HAMP domain ABC08_11290 PF00860 Permease family ABC08_11315 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_11325 PF13419 Haloacid dehalogenase-like hydrolase ABC08_11330 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11335 PF08402 TOBE domain ABC08_11335 PF00005 ABC transporter ABC08_11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_11340 PF03466 LysR substrate binding domain ABC08_11350 PF00581 Rhodanese-like domain ABC08_11360 PF01435 Peptidase family M48 ABC08_11365 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_11365 PF00107 Zinc-binding dehydrogenase ABC08_11370 PF00892 EamA-like transporter family ABC08_11380 PF01047 MarR family ABC08_11390 PF00529 HlyD membrane-fusion protein of T1SS ABC08_11390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABC08_11395 PF07690 Major Facilitator Superfamily ABC08_11400 PF00180 Isocitrate/isopropylmalate dehydrogenase ABC08_11405 PF00392 Bacterial regulatory proteins, gntR family ABC08_11405 PF00155 Aminotransferase class I and II ABC08_11410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_11415 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11420 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11420 PF12911 N-terminal TM domain of oligopeptide transport permease C ABC08_11425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_11425 PF00005 ABC transporter ABC08_11435 PF00202 Aminotransferase class-III ABC08_11440 PF07883 Cupin domain ABC08_11445 PF00850 Histone deacetylase domain ABC08_11450 PF01546 Peptidase family M20/M25/M40 ABC08_11450 PF07687 Peptidase dimerisation domain ABC08_11460 PF00171 Aldehyde dehydrogenase family ABC08_11465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC08_11470 PF00202 Aminotransferase class-III ABC08_11475 PF01235 Sodium:alanine symporter family ABC08_11480 PF05872 Bacterial protein of unknown function (DUF853) ABC08_11485 PF01709 Transcriptional regulator ABC08_11490 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABC08_11490 PF02843 Phosphoribosylglycinamide synthetase, C domain ABC08_11490 PF02844 Phosphoribosylglycinamide synthetase, N domain ABC08_11495 PF01218 Coproporphyrinogen III oxidase ABC08_11500 PF01467 Cytidylyltransferase-like ABC08_11510 PF02590 Predicted SPOUT methyltransferase ABC08_11515 PF02545 Maf-like protein ABC08_11520 PF03212 Pertactin ABC08_11520 PF03797 Autotransporter beta-domain ABC08_11555 PF10150 Ribonuclease E/G family ABC08_11555 PF00575 S1 RNA binding domain ABC08_11560 PF01842 ACT domain ABC08_11560 PF00800 Prephenate dehydratase ABC08_11570 PF07690 Major Facilitator Superfamily ABC08_11575 PF00664 ABC transporter transmembrane region ABC08_11575 PF00005 ABC transporter ABC08_11580 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABC08_11590 PF03692 Putative zinc- or iron-chelating domain ABC08_11605 PF00884 Sulfatase ABC08_11610 PF00534 Glycosyl transferases group 1 ABC08_11610 PF13439 Glycosyltransferase Family 4 ABC08_11615 PF00535 Glycosyl transferase family 2 ABC08_11620 PF01522 Polysaccharide deacetylase ABC08_11625 PF13439 Glycosyltransferase Family 4 ABC08_11625 PF00534 Glycosyl transferases group 1 ABC08_11630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABC08_11630 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABC08_11630 PF14579 Helix-hairpin-helix motif ABC08_11630 PF01336 OB-fold nucleic acid binding domain ABC08_11630 PF02811 PHP domain ABC08_11640 PF04408 Helicase associated domain (HA2) ABC08_11640 PF00270 DEAD/DEAH box helicase ABC08_11640 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ABC08_11640 PF11898 Domain of unknown function (DUF3418) ABC08_11640 PF00271 Helicase conserved C-terminal domain ABC08_11645 PF00583 Acetyltransferase (GNAT) family ABC08_11645 PF00696 Amino acid kinase family ABC08_11650 PF04362 Bacterial Fe(2+) trafficking ABC08_11655 PF05506 Domain of unknown function (DUF756) ABC08_11655 PF04185 Phosphoesterase family ABC08_11660 PF01895 PhoU domain ABC08_11665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ABC08_11670 PF18158 Adaptive response protein AidB N-terminal domain ABC08_11670 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_11670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_11675 PF02646 RmuC family ABC08_11685 PF02245 Methylpurine-DNA glycosylase (MPG) ABC08_11695 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11700 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11705 PF08402 TOBE domain ABC08_11705 PF00005 ABC transporter ABC08_11710 PF13416 Bacterial extracellular solute-binding protein ABC08_11730 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_11740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_11760 PF00285 Citrate synthase, C-terminal domain ABC08_11765 PF03937 Flavinator of succinate dehydrogenase ABC08_11770 PF13085 2Fe-2S iron-sulfur cluster binding domain ABC08_11775 PF02910 Fumarate reductase flavoprotein C-term ABC08_11775 PF00890 FAD binding domain ABC08_11780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABC08_11785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABC08_11790 PF07702 UTRA domain ABC08_11790 PF00392 Bacterial regulatory proteins, gntR family ABC08_11795 PF00056 lactate/malate dehydrogenase, NAD binding domain ABC08_11795 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABC08_11805 PF00285 Citrate synthase, C-terminal domain ABC08_11810 PF00694 Aconitase C-terminal domain ABC08_11810 PF00330 Aconitase family (aconitate hydratase) ABC08_11815 PF04303 PrpF protein ABC08_11820 PF03972 MmgE/PrpD family ABC08_11830 PF01170 Putative RNA methylase family UPF0020 ABC08_11830 PF02926 THUMP domain ABC08_11850 PF16177 Acetyl-coenzyme A synthetase N-terminus ABC08_11850 PF13193 AMP-binding enzyme C-terminal domain ABC08_11850 PF00501 AMP-binding enzyme ABC08_11860 PF01430 Hsp33 protein ABC08_11885 PF00211 Adenylate and Guanylate cyclase catalytic domain ABC08_11890 PF04977 Septum formation initiator ABC08_11895 PF03952 Enolase, N-terminal domain ABC08_11895 PF00113 Enolase, C-terminal TIM barrel domain ABC08_11905 PF00793 DAHP synthetase I family ABC08_11910 PF00117 Glutamine amidotransferase class-I ABC08_11910 PF06418 CTP synthase N-terminus ABC08_11920 PF01321 Creatinase/Prolidase N-terminal domain ABC08_11920 PF00557 Metallopeptidase family M24 ABC08_11930 PF03576 Peptidase family S58 ABC08_11935 PF12911 N-terminal TM domain of oligopeptide transport permease C ABC08_11935 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11940 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_11945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_11950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_11950 PF00005 ABC transporter ABC08_11955 PF01112 Asparaginase ABC08_11965 PF01144 Coenzyme A transferase ABC08_11985 PF16363 GDP-mannose 4,6 dehydratase ABC08_12000 PF01212 Beta-eliminating lyase ABC08_12005 PF00892 EamA-like transporter family ABC08_12010 PF16177 Acetyl-coenzyme A synthetase N-terminus ABC08_12010 PF00501 AMP-binding enzyme ABC08_12010 PF13193 AMP-binding enzyme C-terminal domain ABC08_12020 PF03928 Haem-degrading ABC08_12025 PF16177 Acetyl-coenzyme A synthetase N-terminus ABC08_12025 PF00501 AMP-binding enzyme ABC08_12025 PF13193 AMP-binding enzyme C-terminal domain ABC08_12030 PF00877 NlpC/P60 family ABC08_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_12045 PF03466 LysR substrate binding domain ABC08_12050 PF00171 Aldehyde dehydrogenase family ABC08_12060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_12060 PF03466 LysR substrate binding domain ABC08_12070 PF02789 Cytosol aminopeptidase family, N-terminal domain ABC08_12070 PF00883 Cytosol aminopeptidase family, catalytic domain ABC08_12075 PF04364 DNA polymerase III chi subunit, HolC ABC08_12085 PF01027 Inhibitor of apoptosis-promoting Bax1 ABC08_12090 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_12105 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_12115 PF11967 Recombination protein O N terminal ABC08_12115 PF02565 Recombination protein O C terminal ABC08_12120 PF07650 KH domain ABC08_12120 PF01926 50S ribosome-binding GTPase ABC08_12125 PF00035 Double-stranded RNA binding motif ABC08_12125 PF14622 Ribonuclease-III-like ABC08_12130 PF10502 Signal peptidase, peptidase S26 ABC08_12135 PF06421 GTP-binding protein LepA C-terminus ABC08_12135 PF00679 Elongation factor G C-terminus ABC08_12135 PF03144 Elongation factor Tu domain 2 ABC08_12135 PF00009 Elongation factor Tu GTP binding domain ABC08_12140 PF17820 PDZ domain ABC08_12140 PF13180 PDZ domain ABC08_12155 PF04542 Sigma-70 region 2 ABC08_12155 PF08281 Sigma-70, region 4 ABC08_12165 PF00109 Beta-ketoacyl synthase, N-terminal domain ABC08_12165 PF02801 Beta-ketoacyl synthase, C-terminal domain ABC08_12170 PF00550 Phosphopantetheine attachment site ABC08_12180 PF00698 Acyl transferase domain ABC08_12185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABC08_12185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABC08_12190 PF02504 Fatty acid synthesis protein ABC08_12195 PF01783 Ribosomal L32p protein family ABC08_12200 PF02620 Large ribosomal RNA subunit accumulation protein YceD ABC08_12205 PF02545 Maf-like protein ABC08_12215 PF01510 N-acetylmuramoyl-L-alanine amidase ABC08_12230 PF03883 Peroxide stress protein YaaA ABC08_12240 PF00106 short chain dehydrogenase ABC08_12245 PF02254 TrkA-N domain ABC08_12245 PF00999 Sodium/hydrogen exchanger family ABC08_12255 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABC08_12285 PF07690 Major Facilitator Superfamily ABC08_12290 PF07660 Secretin and TonB N terminus short domain ABC08_12290 PF00593 TonB dependent receptor ABC08_12290 PF07715 TonB-dependent Receptor Plug Domain ABC08_12305 PF17151 Periplasmic sensor domain ABC08_12305 PF00990 Diguanylate cyclase, GGDEF domain ABC08_12330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABC08_12330 PF02403 Seryl-tRNA synthetase N-terminal domain ABC08_12335 PF12002 MgsA AAA+ ATPase C terminal ABC08_12335 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_12335 PF16193 AAA C-terminal domain ABC08_12340 PF03548 Outer membrane lipoprotein carrier protein LolA ABC08_12345 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ABC08_12345 PF17854 FtsK alpha domain ABC08_12345 PF01580 FtsK/SpoIIIE family ABC08_12345 PF09397 Ftsk gamma domain ABC08_12350 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_12355 PF01713 Smr domain ABC08_12355 PF00488 MutS domain V ABC08_12360 PF00893 Small Multidrug Resistance protein ABC08_12375 PF00474 Sodium:solute symporter family ABC08_12385 PF03814 Potassium-transporting ATPase A subunit ABC08_12395 PF02669 K+-transporting ATPase, c chain ABC08_12400 PF13493 Domain of unknown function (DUF4118) ABC08_12400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_12400 PF13492 GAF domain ABC08_12400 PF00512 His Kinase A (phospho-acceptor) domain ABC08_12400 PF02702 Osmosensitive K+ channel His kinase sensor domain ABC08_12405 PF00072 Response regulator receiver domain ABC08_12405 PF00486 Transcriptional regulatory protein, C terminal ABC08_12425 PF00180 Isocitrate/isopropylmalate dehydrogenase ABC08_12440 PF00034 Cytochrome c ABC08_12450 PF01434 Peptidase family M41 ABC08_12450 PF17862 AAA+ lid domain ABC08_12450 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_12470 PF05193 Peptidase M16 inactive domain ABC08_12470 PF00675 Insulinase (Peptidase family M16) ABC08_12475 PF00226 DnaJ domain ABC08_12475 PF01556 DnaJ C terminal domain ABC08_12475 PF00684 DnaJ central domain ABC08_12480 PF00012 Hsp70 protein ABC08_12490 PF01025 GrpE ABC08_12500 PF00762 Ferrochelatase ABC08_12505 PF01628 HrcA protein C terminal domain ABC08_12505 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ABC08_12510 PF01513 ATP-NAD kinase ABC08_12515 PF02463 RecF/RecN/SMC N terminal domain ABC08_12520 PF01475 Ferric uptake regulator family ABC08_12525 PF04355 SmpA / OmlA family ABC08_12530 PF01113 Dihydrodipicolinate reductase, N-terminus ABC08_12530 PF05173 Dihydrodipicolinate reductase, C-terminus ABC08_12535 PF01565 FAD binding domain ABC08_12535 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABC08_12545 PF00561 alpha/beta hydrolase fold ABC08_12555 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_12560 PF00551 Formyl transferase ABC08_12570 PF01571 Aminomethyltransferase folate-binding domain ABC08_12570 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_12570 PF17806 Sarcosine oxidase A3 domain ABC08_12570 PF08669 Glycine cleavage T-protein C-terminal barrel domain ABC08_12575 PF04267 Sarcosine oxidase, delta subunit family ABC08_12580 PF01266 FAD dependent oxidoreductase ABC08_12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_12590 PF03466 LysR substrate binding domain ABC08_12595 PF02615 Malate/L-lactate dehydrogenase ABC08_12600 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABC08_12600 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABC08_12605 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_12630 PF00263 Bacterial type II and III secretion system protein ABC08_12630 PF13629 Pilus formation protein N terminal region ABC08_12630 PF04972 BON domain ABC08_12665 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABC08_12670 PF00719 Inorganic pyrophosphatase ABC08_12690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABC08_12690 PF03900 Porphobilinogen deaminase, C-terminal domain ABC08_12700 PF03741 Integral membrane protein TerC family ABC08_12705 PF03741 Integral membrane protein TerC family ABC08_12710 PF02629 CoA binding domain ABC08_12710 PF00549 CoA-ligase ABC08_12715 PF00549 CoA-ligase ABC08_12715 PF08442 ATP-grasp domain ABC08_12725 PF01717 Cobalamin-independent synthase, Catalytic domain ABC08_12725 PF08267 Cobalamin-independent synthase, N-terminal domain ABC08_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_12730 PF03466 LysR substrate binding domain ABC08_12735 PF02631 RecX family ABC08_12740 PF00154 recA bacterial DNA recombination protein ABC08_12745 PF00486 Transcriptional regulatory protein, C terminal ABC08_12745 PF00072 Response regulator receiver domain ABC08_12750 PF00512 His Kinase A (phospho-acceptor) domain ABC08_12750 PF08521 Two-component sensor kinase N-terminal ABC08_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_12755 PF08946 Osmosensory transporter coiled coil ABC08_12755 PF00083 Sugar (and other) transporter ABC08_12760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_12760 PF00378 Enoyl-CoA hydratase/isomerase ABC08_12760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_12765 PF08402 TOBE domain ABC08_12765 PF00005 ABC transporter ABC08_12770 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_12780 PF00106 short chain dehydrogenase ABC08_12800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_12800 PF03466 LysR substrate binding domain ABC08_12805 PF02515 CoA-transferase family III ABC08_12815 PF04381 Putative exonuclease, RdgC ABC08_12820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABC08_12820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABC08_12840 PF04231 Endonuclease I ABC08_12890 PF00216 Bacterial DNA-binding protein ABC08_12895 PF03484 tRNA synthetase B5 domain ABC08_12895 PF03483 B3/4 domain ABC08_12895 PF03147 Ferredoxin-fold anticodon binding domain ABC08_12895 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABC08_12895 PF01588 Putative tRNA binding domain ABC08_12900 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABC08_12900 PF01409 tRNA synthetases class II core domain (F) ABC08_12905 PF00453 Ribosomal protein L20 ABC08_12910 PF01632 Ribosomal protein L35 ABC08_12920 PF00692 dUTPase ABC08_12930 PF00392 Bacterial regulatory proteins, gntR family ABC08_12930 PF00155 Aminotransferase class I and II ABC08_12945 PF13847 Methyltransferase domain ABC08_12955 PF09335 SNARE associated Golgi protein ABC08_12980 PF00356 Bacterial regulatory proteins, lacI family ABC08_12985 PF00005 ABC transporter ABC08_12985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_12995 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_13000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_13005 PF07687 Peptidase dimerisation domain ABC08_13005 PF01546 Peptidase family M20/M25/M40 ABC08_13015 PF01810 LysE type translocator ABC08_13025 PF00155 Aminotransferase class I and II ABC08_13025 PF00392 Bacterial regulatory proteins, gntR family ABC08_13030 PF07690 Major Facilitator Superfamily ABC08_13035 PF00107 Zinc-binding dehydrogenase ABC08_13035 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_13050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_13050 PF03466 LysR substrate binding domain ABC08_13055 PF12833 Helix-turn-helix domain ABC08_13055 PF01965 DJ-1/PfpI family ABC08_13060 PF12706 Beta-lactamase superfamily domain ABC08_13075 PF10996 Beta-Casp domain ABC08_13075 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABC08_13075 PF00753 Metallo-beta-lactamase superfamily ABC08_13080 PF01740 STAS domain ABC08_13080 PF00916 Sulfate permease family ABC08_13110 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_13115 PF00005 ABC transporter ABC08_13125 PF01979 Amidohydrolase family ABC08_13140 PF07690 Major Facilitator Superfamily ABC08_13150 PF07804 HipA-like C-terminal domain ABC08_13150 PF13657 HipA N-terminal domain ABC08_13160 PF02540 NAD synthase ABC08_13160 PF00117 Glutamine amidotransferase class-I ABC08_13160 PF00958 GMP synthase C terminal domain ABC08_13165 PF00571 CBS domain ABC08_13165 PF00478 IMP dehydrogenase / GMP reductase domain ABC08_13185 PF00196 Bacterial regulatory proteins, luxR family ABC08_13185 PF00072 Response regulator receiver domain ABC08_13210 PF00149 Calcineurin-like phosphoesterase ABC08_13210 PF12320 Type 5 capsule protein repressor C-terminal domain ABC08_13215 PF01266 FAD dependent oxidoreductase ABC08_13220 PF01037 Lrp/AsnC ligand binding domain ABC08_13245 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_13255 PF00005 ABC transporter ABC08_13255 PF17912 MalK OB fold domain ABC08_13265 PF00455 DeoR C terminal sensor domain ABC08_13265 PF08220 DeoR-like helix-turn-helix domain ABC08_13270 PF01266 FAD dependent oxidoreductase ABC08_13270 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ABC08_13285 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_13290 PF14537 Cytochrome c3 ABC08_13290 PF00890 FAD binding domain ABC08_13315 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_13320 PF00701 Dihydrodipicolinate synthetase family ABC08_13340 PF00472 RF-1 domain ABC08_13350 PF01242 6-pyruvoyl tetrahydropterin synthase ABC08_13355 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_13360 PF00596 Class II Aldolase and Adducin N-terminal domain ABC08_13385 PF05860 haemagglutination activity domain ABC08_13385 PF13332 Hemagglutinin repeat ABC08_13385 PF05594 Haemagluttinin repeat ABC08_13385 PF13018 Extended Signal Peptide of Type V secretion system ABC08_13390 PF02769 AIR synthase related protein, C-terminal domain ABC08_13390 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ABC08_13390 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABC08_13395 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ABC08_13400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_13405 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_13420 PF16970 Type-1 fimbrial protein, A ABC08_13430 PF03061 Thioesterase superfamily ABC08_13435 PF00378 Enoyl-CoA hydratase/isomerase ABC08_13440 PF00171 Aldehyde dehydrogenase family ABC08_13455 PF01883 Iron-sulfur cluster assembly protein ABC08_13460 PF05138 Phenylacetic acid catabolic protein ABC08_13465 PF06243 Phenylacetic acid degradation B ABC08_13470 PF05138 Phenylacetic acid catabolic protein ABC08_13475 PF08223 PaaX-like protein C-terminal domain ABC08_13475 PF07848 PaaX-like protein ABC08_13480 PF03853 YjeF-related protein N-terminus ABC08_13485 PF00929 Exonuclease ABC08_13490 PF01435 Peptidase family M48 ABC08_13495 PF03193 RsgA GTPase ABC08_13505 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_13510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_13520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_13520 PF03466 LysR substrate binding domain ABC08_13545 PF00543 Nitrogen regulatory protein P-II ABC08_13550 PF02540 NAD synthase ABC08_13550 PF00795 Carbon-nitrogen hydrolase ABC08_13555 PF00924 Mechanosensitive ion channel ABC08_13560 PF14698 Argininosuccinate lyase C-terminal ABC08_13560 PF00206 Lyase ABC08_13580 PF06463 Molybdenum Cofactor Synthesis C ABC08_13580 PF04055 Radical SAM superfamily ABC08_13585 PF03453 MoeA N-terminal region (domain I and II) ABC08_13585 PF00994 Probable molybdopterin binding domain ABC08_13585 PF03454 MoeA C-terminal region (domain IV) ABC08_13590 PF00994 Probable molybdopterin binding domain ABC08_13595 PF02391 MoaE protein ABC08_13605 PF01967 MoaC family ABC08_13615 PF01738 Dienelactone hydrolase family ABC08_13625 PF08534 Redoxin ABC08_13640 PF04055 Radical SAM superfamily ABC08_13640 PF06968 Biotin and Thiamin Synthesis associated domain ABC08_13660 PF00403 Heavy-metal-associated domain ABC08_13665 PF13411 MerR HTH family regulatory protein ABC08_13690 PF02104 SURF1 family ABC08_13695 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABC08_13700 PF00510 Cytochrome c oxidase subunit III ABC08_13705 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABC08_13715 PF00083 Sugar (and other) transporter ABC08_13715 PF07690 Major Facilitator Superfamily ABC08_13730 PF04380 Membrane fusogenic activity ABC08_13735 PF00543 Nitrogen regulatory protein P-II ABC08_13745 PF03797 Autotransporter beta-domain ABC08_13745 PF03212 Pertactin ABC08_13755 PF00440 Bacterial regulatory proteins, tetR family ABC08_13760 PF07690 Major Facilitator Superfamily ABC08_13765 PF00005 ABC transporter ABC08_13770 PF00005 ABC transporter ABC08_13770 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_13775 PF02653 Branched-chain amino acid transport system / permease component ABC08_13775 PF11862 Domain of unknown function (DUF3382) ABC08_13780 PF02653 Branched-chain amino acid transport system / permease component ABC08_13785 PF13458 Periplasmic binding protein ABC08_13795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ABC08_13795 PF00171 Aldehyde dehydrogenase family ABC08_13795 PF01619 Proline dehydrogenase ABC08_13795 PF14850 DNA-binding domain of Proline dehydrogenase ABC08_13805 PF02470 MlaD protein ABC08_13810 PF04403 Paraquat-inducible protein A ABC08_13815 PF02861 Clp amino terminal domain, pathogenicity island component ABC08_13815 PF17871 AAA lid domain ABC08_13815 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_13815 PF10431 C-terminal, D2-small domain, of ClpB protein ABC08_13815 PF07724 AAA domain (Cdc48 subfamily) ABC08_13820 PF06832 Penicillin-Binding Protein C-terminus Family ABC08_13820 PF00905 Penicillin binding protein transpeptidase domain ABC08_13820 PF00912 Transglycosylase ABC08_13825 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ABC08_13825 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ABC08_13825 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ABC08_13825 PF17962 Bacterial macroglobulin domain 6 ABC08_13825 PF07703 Alpha-2-macroglobulin bait region domain ABC08_13825 PF01835 MG2 domain ABC08_13825 PF00207 Alpha-2-macroglobulin family ABC08_13825 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ABC08_13830 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABC08_13835 PF00313 'Cold-shock' DNA-binding domain ABC08_13845 PF00108 Thiolase, N-terminal domain ABC08_13845 PF02803 Thiolase, C-terminal domain ABC08_13850 PF00654 Voltage gated chloride channel ABC08_13855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABC08_13855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABC08_13860 PF13742 OB-fold nucleic acid binding domain ABC08_13860 PF02601 Exonuclease VII, large subunit ABC08_13870 PF01618 MotA/TolQ/ExbB proton channel family ABC08_13875 PF02472 Biopolymer transport protein ExbD/TolR ABC08_13880 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABC08_13885 PF03966 Trm112p-like protein ABC08_13890 PF02348 Cytidylyltransferase ABC08_13895 PF05191 Adenylate kinase, active site lid ABC08_13900 PF00106 short chain dehydrogenase ABC08_13905 PF03023 Lipid II flippase MurJ ABC08_13915 PF01649 Ribosomal protein S20 ABC08_13920 PF03328 HpcH/HpaI aldolase/citrate lyase family ABC08_13945 PF02615 Malate/L-lactate dehydrogenase ABC08_13960 PF14821 Threonine synthase N terminus ABC08_13960 PF00291 Pyridoxal-phosphate dependent enzyme ABC08_13965 PF00742 Homoserine dehydrogenase ABC08_13965 PF01842 ACT domain ABC08_13965 PF03447 Homoserine dehydrogenase, NAD binding domain ABC08_13970 PF00155 Aminotransferase class I and II ABC08_13975 PF04430 Protein of unknown function (DUF498/DUF598) ABC08_13980 PF00578 AhpC/TSA family ABC08_13985 PF02562 PhoH-like protein ABC08_13985 PF13638 PIN domain ABC08_13990 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABC08_13995 PF13593 SBF-like CPA transporter family (DUF4137) ABC08_14000 PF00772 DnaB-like helicase N terminal domain ABC08_14000 PF03796 DnaB-like helicase C terminal domain ABC08_14010 PF03948 Ribosomal protein L9, C-terminal domain ABC08_14010 PF01281 Ribosomal protein L9, N-terminal domain ABC08_14015 PF01084 Ribosomal protein S18 ABC08_14025 PF01250 Ribosomal protein S6 ABC08_14030 PF02649 Type I GTP cyclohydrolase folE2 ABC08_14035 PF02780 Transketolase, C-terminal domain ABC08_14035 PF02779 Transketolase, pyrimidine binding domain ABC08_14035 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABC08_14040 PF00348 Polyprenyl synthetase ABC08_14045 PF02609 Exonuclease VII small subunit ABC08_14055 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_14075 PF03448 MgtE intracellular N domain ABC08_14075 PF01769 Divalent cation transporter ABC08_14075 PF00571 CBS domain ABC08_14080 PF03061 Thioesterase superfamily ABC08_14085 PF03601 Conserved hypothetical protein 698 ABC08_14090 PF03466 LysR substrate binding domain ABC08_14090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14095 PF01546 Peptidase family M20/M25/M40 ABC08_14095 PF07687 Peptidase dimerisation domain ABC08_14100 PF13193 AMP-binding enzyme C-terminal domain ABC08_14100 PF00501 AMP-binding enzyme ABC08_14110 PF00459 Inositol monophosphatase family ABC08_14120 PF13802 Galactose mutarotase-like ABC08_14120 PF01055 Glycosyl hydrolases family 31 ABC08_14125 PF09383 NIL domain ABC08_14125 PF00005 ABC transporter ABC08_14130 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_14135 PF03180 NLPA lipoprotein ABC08_14150 PF00465 Iron-containing alcohol dehydrogenase ABC08_14175 PF00392 Bacterial regulatory proteins, gntR family ABC08_14175 PF07729 FCD domain ABC08_14180 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_14200 PF14785 Maltose transport system permease protein MalF P2 domain ABC08_14200 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_14205 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_14210 PF00005 ABC transporter ABC08_14210 PF08402 TOBE domain ABC08_14225 PF01547 Bacterial extracellular solute-binding protein ABC08_14240 PF09278 MerR, DNA binding ABC08_14240 PF00376 MerR family regulatory protein ABC08_14245 PF03352 Methyladenine glycosylase ABC08_14250 PF05170 AsmA family ABC08_14260 PF00440 Bacterial regulatory proteins, tetR family ABC08_14305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14305 PF03466 LysR substrate binding domain ABC08_14310 PF02548 Ketopantoate hydroxymethyltransferase ABC08_14315 PF13609 Gram-negative porin ABC08_14335 PF00083 Sugar (and other) transporter ABC08_14345 PF03466 LysR substrate binding domain ABC08_14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14350 PF00155 Aminotransferase class I and II ABC08_14355 PF01966 HD domain ABC08_14360 PF00403 Heavy-metal-associated domain ABC08_14380 PF00107 Zinc-binding dehydrogenase ABC08_14380 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_14395 PF00005 ABC transporter ABC08_14400 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_14410 PF13193 AMP-binding enzyme C-terminal domain ABC08_14410 PF00501 AMP-binding enzyme ABC08_14420 PF13404 AsnC-type helix-turn-helix domain ABC08_14420 PF01037 Lrp/AsnC ligand binding domain ABC08_14425 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_14430 PF00677 Lumazine binding domain ABC08_14435 PF01425 Amidase ABC08_14450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14450 PF03466 LysR substrate binding domain ABC08_14455 PF07690 Major Facilitator Superfamily ABC08_14460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABC08_14470 PF03466 LysR substrate binding domain ABC08_14470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14490 PF00005 ABC transporter ABC08_14505 PF02653 Branched-chain amino acid transport system / permease component ABC08_14510 PF01042 Endoribonuclease L-PSP ABC08_14525 PF01614 Bacterial transcriptional regulator ABC08_14525 PF09339 IclR helix-turn-helix domain ABC08_14540 PF00005 ABC transporter ABC08_14545 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_14560 PF00378 Enoyl-CoA hydratase/isomerase ABC08_14565 PF02515 CoA-transferase family III ABC08_14570 PF01425 Amidase ABC08_14580 PF00392 Bacterial regulatory proteins, gntR family ABC08_14580 PF07729 FCD domain ABC08_14590 PF01594 AI-2E family transporter ABC08_14610 PF01322 Cytochrome C' ABC08_14615 PF08328 Adenylosuccinate lyase C-terminal ABC08_14615 PF00206 Lyase ABC08_14620 PF00043 Glutathione S-transferase, C-terminal domain ABC08_14620 PF13417 Glutathione S-transferase, N-terminal domain ABC08_14625 PF01925 Sulfite exporter TauE/SafE ABC08_14635 PF03466 LysR substrate binding domain ABC08_14635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14640 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_14650 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ABC08_14650 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABC08_14655 PF02233 NAD(P) transhydrogenase beta subunit ABC08_14665 PF07715 TonB-dependent Receptor Plug Domain ABC08_14665 PF00593 TonB dependent receptor ABC08_14670 PF00756 Putative esterase ABC08_14675 PF02754 Cysteine-rich domain ABC08_14675 PF13183 4Fe-4S dicluster domain ABC08_14680 PF01565 FAD binding domain ABC08_14685 PF01565 FAD binding domain ABC08_14685 PF02913 FAD linked oxidases, C-terminal domain ABC08_14690 PF01565 FAD binding domain ABC08_14690 PF02913 FAD linked oxidases, C-terminal domain ABC08_14695 PF13332 Hemagglutinin repeat ABC08_14695 PF13018 Extended Signal Peptide of Type V secretion system ABC08_14695 PF05860 haemagglutination activity domain ABC08_14695 PF13332 Hemagglutinin repeat ABC08_14695 PF05594 Haemagluttinin repeat ABC08_14695 PF13018 Extended Signal Peptide of Type V secretion system ABC08_14695 PF05594 Haemagluttinin repeat ABC08_14695 PF05860 haemagglutination activity domain ABC08_14700 PF00793 DAHP synthetase I family ABC08_14705 PF01523 Putative modulator of DNA gyrase ABC08_14710 PF00795 Carbon-nitrogen hydrolase ABC08_14730 PF08281 Sigma-70, region 4 ABC08_14730 PF04542 Sigma-70 region 2 ABC08_14740 PF04461 Protein of unknown function (DUF520) ABC08_14755 PF01476 LysM domain ABC08_14755 PF01551 Peptidase family M23 ABC08_14770 PF00593 TonB dependent receptor ABC08_14770 PF07715 TonB-dependent Receptor Plug Domain ABC08_14785 PF05114 Protein of unknown function (DUF692) ABC08_14805 PF01022 Bacterial regulatory protein, arsR family ABC08_14810 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABC08_14815 PF00510 Cytochrome c oxidase subunit III ABC08_14820 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABC08_14825 PF06481 COX Aromatic Rich Motif ABC08_14825 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABC08_14830 PF00072 Response regulator receiver domain ABC08_14845 PF02678 Pirin ABC08_14845 PF05726 Pirin C-terminal cupin domain ABC08_14865 PF02515 CoA-transferase family III ABC08_14870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_14870 PF03466 LysR substrate binding domain ABC08_14875 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_14885 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_14885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_14885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_14885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_14885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_14885 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_14900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABC08_14900 PF01872 RibD C-terminal domain ABC08_14915 PF03477 ATP cone domain ABC08_14920 PF00464 Serine hydroxymethyltransferase ABC08_14930 PF00579 tRNA synthetases class I (W and Y) ABC08_14930 PF01479 S4 domain ABC08_14940 PF01551 Peptidase family M23 ABC08_14940 PF08460 Bacterial SH3 domain ABC08_14945 PF03702 Anhydro-N-acetylmuramic acid kinase ABC08_14950 PF01521 Iron-sulphur cluster biosynthesis ABC08_14960 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABC08_14960 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABC08_14965 PF00380 Ribosomal protein S9/S16 ABC08_14970 PF00572 Ribosomal protein L13 ABC08_14975 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_14980 PF01523 Putative modulator of DNA gyrase ABC08_14985 PF04751 Protein of unknown function (DUF615) ABC08_14990 PF02230 Phospholipase/Carboxylesterase ABC08_15000 PF00005 ABC transporter ABC08_15005 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_15010 PF00857 Isochorismatase family ABC08_15015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABC08_15020 PF00271 Helicase conserved C-terminal domain ABC08_15020 PF03880 DbpA RNA binding domain ABC08_15020 PF00270 DEAD/DEAH box helicase ABC08_15030 PF07729 FCD domain ABC08_15030 PF00392 Bacterial regulatory proteins, gntR family ABC08_15040 PF13380 CoA binding domain ABC08_15040 PF13607 Succinyl-CoA ligase like flavodoxin domain ABC08_15040 PF00583 Acetyltransferase (GNAT) family ABC08_15045 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABC08_15060 PF01037 Lrp/AsnC ligand binding domain ABC08_15075 PF03477 ATP cone domain ABC08_15075 PF02867 Ribonucleotide reductase, barrel domain ABC08_15075 PF00317 Ribonucleotide reductase, all-alpha domain ABC08_15080 PF00268 Ribonucleotide reductase, small chain ABC08_15095 PF13193 AMP-binding enzyme C-terminal domain ABC08_15095 PF00501 AMP-binding enzyme ABC08_15100 PF03062 MBOAT, membrane-bound O-acyltransferase family ABC08_15125 PF00294 pfkB family carbohydrate kinase ABC08_15140 PF02785 Biotin carboxylase C-terminal domain ABC08_15140 PF00289 Biotin carboxylase, N-terminal domain ABC08_15140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABC08_15145 PF00364 Biotin-requiring enzyme ABC08_15150 PF01220 Dehydroquinase class II ABC08_15155 PF08534 Redoxin ABC08_15160 PF01225 Mur ligase family, catalytic domain ABC08_15160 PF02875 Mur ligase family, glutamate ligase domain ABC08_15160 PF08245 Mur ligase middle domain ABC08_15165 PF05728 Uncharacterised protein family (UPF0227) ABC08_15170 PF00773 RNB domain ABC08_15180 PF08501 Shikimate dehydrogenase substrate binding domain ABC08_15180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABC08_15180 PF01488 Shikimate / quinate 5-dehydrogenase ABC08_15190 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ABC08_15200 PF01037 Lrp/AsnC ligand binding domain ABC08_15205 PF01266 FAD dependent oxidoreductase ABC08_15210 PF00106 short chain dehydrogenase ABC08_15220 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_15230 PF02810 SEC-C motif ABC08_15230 PF07516 SecA Wing and Scaffold domain ABC08_15230 PF01043 SecA preprotein cross-linking domain ABC08_15230 PF07517 SecA DEAD-like domain ABC08_15235 PF01551 Peptidase family M23 ABC08_15235 PF01476 LysM domain ABC08_15235 PF08525 Opacity-associated protein A N-terminal motif ABC08_15245 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABC08_15250 PF00091 Tubulin/FtsZ family, GTPase domain ABC08_15250 PF12327 FtsZ family, C-terminal domain ABC08_15255 PF02491 SHS2 domain inserted in FTSA ABC08_15260 PF03799 Cell division protein FtsQ ABC08_15260 PF08478 POTRA domain, FtsQ-type ABC08_15265 PF01820 D-ala D-ala ligase N-terminus ABC08_15265 PF07478 D-ala D-ala ligase C-terminus ABC08_15270 PF01225 Mur ligase family, catalytic domain ABC08_15270 PF08245 Mur ligase middle domain ABC08_15270 PF02875 Mur ligase family, glutamate ligase domain ABC08_15275 PF04101 Glycosyltransferase family 28 C-terminal domain ABC08_15275 PF03033 Glycosyltransferase family 28 N-terminal domain ABC08_15280 PF01098 Cell cycle protein ABC08_15285 PF08245 Mur ligase middle domain ABC08_15285 PF02875 Mur ligase family, glutamate ligase domain ABC08_15290 PF00953 Glycosyl transferase family 4 ABC08_15295 PF08245 Mur ligase middle domain ABC08_15295 PF02875 Mur ligase family, glutamate ligase domain ABC08_15300 PF03717 Penicillin-binding Protein dimerisation domain ABC08_15300 PF00905 Penicillin binding protein transpeptidase domain ABC08_15305 PF04999 Cell division protein FtsL ABC08_15310 PF01795 MraW methylase family ABC08_15315 PF02381 MraZ protein, putative antitoxin-like ABC08_15325 PF01979 Amidohydrolase family ABC08_15330 PF01546 Peptidase family M20/M25/M40 ABC08_15330 PF07687 Peptidase dimerisation domain ABC08_15370 PF01037 Lrp/AsnC ligand binding domain ABC08_15375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABC08_15380 PF01625 Peptide methionine sulfoxide reductase ABC08_15385 PF00034 Cytochrome c ABC08_15390 PF00920 Dehydratase family ABC08_15395 PF01790 Prolipoprotein diacylglyceryl transferase ABC08_15435 PF01970 Tripartite tricarboxylate transporter TctA family ABC08_15445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABC08_15445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABC08_15465 PF01923 Cobalamin adenosyltransferase ABC08_15475 PF07724 AAA domain (Cdc48 subfamily) ABC08_15475 PF10431 C-terminal, D2-small domain, of ClpB protein ABC08_15475 PF00004 ATPase family associated with various cellular activities (AAA) ABC08_15480 PF00227 Proteasome subunit ABC08_15485 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABC08_15490 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABC08_15490 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABC08_15495 PF01475 Ferric uptake regulator family ABC08_15505 PF00005 ABC transporter ABC08_15510 PF00950 ABC 3 transport family ABC08_15515 PF01297 Zinc-uptake complex component A periplasmic ABC08_15525 PF03824 High-affinity nickel-transport protein ABC08_15530 PF07715 TonB-dependent Receptor Plug Domain ABC08_15530 PF00593 TonB dependent receptor ABC08_15535 PF00589 Phage integrase family ABC08_15535 PF02899 Phage integrase, N-terminal SAM-like domain ABC08_15545 PF01678 Diaminopimelate epimerase ABC08_15550 PF03279 Bacterial lipid A biosynthesis acyltransferase ABC08_15560 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABC08_15560 PF02772 S-adenosylmethionine synthetase, central domain ABC08_15560 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABC08_15570 PF13439 Glycosyltransferase Family 4 ABC08_15570 PF00534 Glycosyl transferases group 1 ABC08_15575 PF05221 S-adenosyl-L-homocysteine hydrolase ABC08_15575 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABC08_15580 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ABC08_15585 PF02219 Methylenetetrahydrofolate reductase ABC08_15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_15595 PF03466 LysR substrate binding domain ABC08_15600 PF00850 Histone deacetylase domain ABC08_15605 PF07690 Major Facilitator Superfamily ABC08_15605 PF00083 Sugar (and other) transporter ABC08_15615 PF01464 Transglycosylase SLT domain ABC08_15615 PF14718 Soluble lytic murein transglycosylase L domain ABC08_15620 PF01743 Poly A polymerase head domain ABC08_15620 PF12627 Probable RNA and SrmB- binding site of polymerase A ABC08_15630 PF00271 Helicase conserved C-terminal domain ABC08_15630 PF00270 DEAD/DEAH box helicase ABC08_15635 PF03167 Uracil DNA glycosylase superfamily ABC08_15645 PF13091 PLD-like domain ABC08_15650 PF03459 TOBE domain ABC08_15650 PF00005 ABC transporter ABC08_15655 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_15665 PF00561 alpha/beta hydrolase fold ABC08_15720 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_15735 PF01266 FAD dependent oxidoreductase ABC08_15760 PF00440 Bacterial regulatory proteins, tetR family ABC08_15760 PF17938 Tetracyclin repressor-like, C-terminal domain ABC08_15775 PF00486 Transcriptional regulatory protein, C terminal ABC08_15775 PF00072 Response regulator receiver domain ABC08_15785 PF12951 Passenger-associated-transport-repeat ABC08_15795 PF13361 UvrD-like helicase C-terminal domain ABC08_15795 PF00580 UvrD/REP helicase N-terminal domain ABC08_15820 PF13175 AAA ATPase domain ABC08_15825 PF01555 DNA methylase ABC08_15840 PF13356 Arm DNA-binding domain ABC08_15840 PF00589 Phage integrase family ABC08_15845 PF01926 50S ribosome-binding GTPase ABC08_15845 PF06071 Protein of unknown function (DUF933) ABC08_15855 PF01195 Peptidyl-tRNA hydrolase ABC08_15860 PF14693 Ribosomal protein TL5, C-terminal domain ABC08_15860 PF01386 Ribosomal L25p family ABC08_15865 PF14572 Phosphoribosyl synthetase-associated domain ABC08_15865 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABC08_15875 PF00288 GHMP kinases N terminal domain ABC08_15875 PF08544 GHMP kinases C terminal ABC08_15880 PF03550 Outer membrane lipoprotein LolB ABC08_15890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ABC08_15890 PF06827 Zinc finger found in FPG and IleRS ABC08_15890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ABC08_15900 PF01494 FAD binding domain ABC08_15910 PF03466 LysR substrate binding domain ABC08_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_15915 PF04209 homogentisate 1,2-dioxygenase ABC08_15925 PF00884 Sulfatase ABC08_15930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_15930 PF00512 His Kinase A (phospho-acceptor) domain ABC08_15930 PF08521 Two-component sensor kinase N-terminal ABC08_15935 PF00072 Response regulator receiver domain ABC08_15935 PF00486 Transcriptional regulatory protein, C terminal ABC08_15940 PF01565 FAD binding domain ABC08_15940 PF02913 FAD linked oxidases, C-terminal domain ABC08_15950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABC08_15950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABC08_15950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABC08_15950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABC08_15955 PF00342 Phosphoglucose isomerase ABC08_15960 PF13477 Glycosyl transferase 4-like ABC08_15960 PF00534 Glycosyl transferases group 1 ABC08_15965 PF00534 Glycosyl transferases group 1 ABC08_15965 PF13439 Glycosyltransferase Family 4 ABC08_15970 PF00534 Glycosyl transferases group 1 ABC08_15970 PF13439 Glycosyltransferase Family 4 ABC08_15975 PF13537 Glutamine amidotransferase domain ABC08_15975 PF00733 Asparagine synthase ABC08_15980 PF13439 Glycosyltransferase Family 4 ABC08_15980 PF00534 Glycosyl transferases group 1 ABC08_15985 PF03023 Lipid II flippase MurJ ABC08_15990 PF01370 NAD dependent epimerase/dehydratase family ABC08_15995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABC08_15995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABC08_15995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABC08_16000 PF00953 Glycosyl transferase family 4 ABC08_16005 PF03232 Ubiquinone biosynthesis protein COQ7 ABC08_16015 PF00303 Thymidylate synthase ABC08_16020 PF00186 Dihydrofolate reductase ABC08_16025 PF00392 Bacterial regulatory proteins, gntR family ABC08_16025 PF00155 Aminotransferase class I and II ABC08_16030 PF00202 Aminotransferase class-III ABC08_16035 PF00171 Aldehyde dehydrogenase family ABC08_16040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_16045 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_16050 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_16060 PF07364 Metallopeptidase family M81 ABC08_16060 PF07171 MlrC C-terminus ABC08_16070 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABC08_16075 PF01730 UreF ABC08_16080 PF02814 UreE urease accessory protein, N-terminal domain ABC08_16080 PF05194 UreE urease accessory protein, C-terminal domain ABC08_16085 PF00449 Urease alpha-subunit, N-terminal domain ABC08_16085 PF01979 Amidohydrolase family ABC08_16090 PF00699 Urease beta subunit ABC08_16095 PF04955 HupE / UreJ protein ABC08_16100 PF00547 Urease, gamma subunit ABC08_16105 PF01774 UreD urease accessory protein ABC08_16130 PF00392 Bacterial regulatory proteins, gntR family ABC08_16130 PF07702 UTRA domain ABC08_16135 PF05034 Methylaspartate ammonia-lyase N-terminus ABC08_16135 PF07476 Methylaspartate ammonia-lyase C-terminus ABC08_16140 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_16155 PF04293 SpoVR like protein ABC08_16160 PF04285 Protein of unknown function (DUF444) ABC08_16180 PF02515 CoA-transferase family III ABC08_16185 PF00501 AMP-binding enzyme ABC08_16185 PF14535 AMP-binding enzyme C-terminal domain ABC08_16190 PF08361 MAATS-type transcriptional repressor, C-terminal region ABC08_16190 PF00440 Bacterial regulatory proteins, tetR family ABC08_16195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_16195 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_16195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_16205 PF02653 Branched-chain amino acid transport system / permease component ABC08_16210 PF00005 ABC transporter ABC08_16215 PF00005 ABC transporter ABC08_16215 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_16225 PF00106 short chain dehydrogenase ABC08_16230 PF00378 Enoyl-CoA hydratase/isomerase ABC08_16295 PF00732 GMC oxidoreductase ABC08_16295 PF05199 GMC oxidoreductase ABC08_16305 PF00075 RNase H ABC08_16310 PF08241 Methyltransferase domain ABC08_16320 PF01476 LysM domain ABC08_16320 PF01464 Transglycosylase SLT domain ABC08_16340 PF04391 Protein of unknown function (DUF533) ABC08_16345 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_16360 PF00072 Response regulator receiver domain ABC08_16360 PF00486 Transcriptional regulatory protein, C terminal ABC08_16365 PF02702 Osmosensitive K+ channel His kinase sensor domain ABC08_16365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_16365 PF13493 Domain of unknown function (DUF4118) ABC08_16375 PF01654 Cytochrome bd terminal oxidase subunit I ABC08_16380 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ABC08_16380 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABC08_16385 PF05209 Septum formation inhibitor MinC, N-terminal domain ABC08_16385 PF03775 Septum formation inhibitor MinC, C-terminal domain ABC08_16390 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABC08_16395 PF03776 Septum formation topological specificity factor MinE ABC08_16425 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_16430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_16435 PF00535 Glycosyl transferase family 2 ABC08_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_16440 PF03466 LysR substrate binding domain ABC08_16450 PF17760 UvrA interaction domain ABC08_16450 PF00005 ABC transporter ABC08_16450 PF17755 UvrA DNA-binding domain ABC08_16455 PF00425 chorismate binding enzyme ABC08_16455 PF04715 Anthranilate synthase component I, N terminal region ABC08_16460 PF01063 Amino-transferase class IV ABC08_16475 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_16480 PF13193 AMP-binding enzyme C-terminal domain ABC08_16480 PF00501 AMP-binding enzyme ABC08_16485 PF00392 Bacterial regulatory proteins, gntR family ABC08_16485 PF07702 UTRA domain ABC08_16490 PF00899 ThiF family ABC08_16495 PF07690 Major Facilitator Superfamily ABC08_16505 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABC08_16505 PF01243 Pyridoxamine 5'-phosphate oxidase ABC08_16510 PF01613 Flavin reductase like domain ABC08_16520 PF00551 Formyl transferase ABC08_16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_16525 PF03466 LysR substrate binding domain ABC08_16555 PF00218 Indole-3-glycerol phosphate synthase ABC08_16560 PF00591 Glycosyl transferase family, a/b domain ABC08_16560 PF02885 Glycosyl transferase family, helical bundle domain ABC08_16565 PF00117 Glutamine amidotransferase class-I ABC08_16570 PF00425 chorismate binding enzyme ABC08_16570 PF04715 Anthranilate synthase component I, N terminal region ABC08_16575 PF13419 Haloacid dehalogenase-like hydrolase ABC08_16585 PF04379 ApaG domain ABC08_16590 PF03562 MltA specific insert domain ABC08_16590 PF06725 3D domain ABC08_16595 PF01494 FAD binding domain ABC08_16600 PF10411 Disulfide bond isomerase protein N-terminus ABC08_16600 PF13098 Thioredoxin-like domain ABC08_16605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC08_16605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABC08_16605 PF01842 ACT domain ABC08_16615 PF01171 PP-loop family ABC08_16625 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_16625 PF13192 Thioredoxin domain ABC08_16630 PF17820 PDZ domain ABC08_16630 PF13180 PDZ domain ABC08_16635 PF00378 Enoyl-CoA hydratase/isomerase ABC08_16660 PF00119 ATP synthase A chain ABC08_16665 PF00137 ATP synthase subunit C ABC08_16670 PF00430 ATP synthase B/B' CF(0) ABC08_16675 PF00213 ATP synthase delta (OSCP) subunit ABC08_16680 PF00306 ATP synthase alpha/beta chain, C terminal domain ABC08_16680 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABC08_16680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABC08_16685 PF00231 ATP synthase ABC08_16690 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABC08_16690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABC08_16695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABC08_16705 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABC08_16710 PF18074 Primosomal protein N C-terminal domain ABC08_16710 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABC08_16710 PF00270 DEAD/DEAH box helicase ABC08_16710 PF17764 3′ DNA-binding domain (3′BD) ABC08_16710 PF00271 Helicase conserved C-terminal domain ABC08_16715 PF13361 UvrD-like helicase C-terminal domain ABC08_16715 PF00580 UvrD/REP helicase N-terminal domain ABC08_16725 PF01546 Peptidase family M20/M25/M40 ABC08_16725 PF07687 Peptidase dimerisation domain ABC08_16735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_16735 PF00005 ABC transporter ABC08_16740 PF12911 N-terminal TM domain of oligopeptide transport permease C ABC08_16740 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_16745 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_16765 PF01256 Carbohydrate kinase ABC08_16770 PF00378 Enoyl-CoA hydratase/isomerase ABC08_16775 PF00378 Enoyl-CoA hydratase/isomerase ABC08_16830 PF07732 Multicopper oxidase ABC08_16830 PF07731 Multicopper oxidase ABC08_16830 PF00394 Multicopper oxidase ABC08_16835 PF05275 Copper resistance protein B precursor (CopB) ABC08_16840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_16840 PF00378 Enoyl-CoA hydratase/isomerase ABC08_16840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_16855 PF09339 IclR helix-turn-helix domain ABC08_16855 PF01614 Bacterial transcriptional regulator ABC08_16860 PF05995 Cysteine dioxygenase type I ABC08_16865 PF01425 Amidase ABC08_16870 PF13458 Periplasmic binding protein ABC08_16895 PF13091 PLD-like domain ABC08_16900 PF03372 Endonuclease/Exonuclease/phosphatase family ABC08_16905 PF02938 GAD domain ABC08_16905 PF01336 OB-fold nucleic acid binding domain ABC08_16905 PF00152 tRNA synthetases class II (D, K and N) ABC08_16935 PF01370 NAD dependent epimerase/dehydratase family ABC08_16935 PF02222 ATP-grasp domain ABC08_16940 PF01380 SIS domain ABC08_16940 PF00571 CBS domain ABC08_16960 PF00005 ABC transporter ABC08_16965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABC08_16970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABC08_16975 PF07475 HPr Serine kinase C-terminal domain ABC08_16975 PF02603 HPr Serine kinase N terminus ABC08_16980 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABC08_16980 PF00034 Cytochrome c ABC08_16980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABC08_16990 PF03668 P-loop ATPase protein family ABC08_16995 PF05036 Sporulation related domain ABC08_16995 PF03330 Lytic transglycolase ABC08_17015 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABC08_17015 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABC08_17020 PF01799 [2Fe-2S] binding domain ABC08_17020 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_17030 PF09084 NMT1/THI5 like ABC08_17035 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17040 PF02441 Flavoprotein ABC08_17045 PF00462 Glutaredoxin ABC08_17050 PF05175 Methyltransferase small domain ABC08_17050 PF17827 PrmC N-terminal domain ABC08_17055 PF00472 RF-1 domain ABC08_17055 PF03462 PCRF domain ABC08_17060 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABC08_17060 PF01488 Shikimate / quinate 5-dehydrogenase ABC08_17060 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABC08_17080 PF01568 Molydopterin dinucleotide binding domain ABC08_17080 PF00384 Molybdopterin oxidoreductase ABC08_17095 PF13380 CoA binding domain ABC08_17095 PF13607 Succinyl-CoA ligase like flavodoxin domain ABC08_17095 PF00583 Acetyltransferase (GNAT) family ABC08_17100 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_17105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_17105 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_17105 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABC08_17110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC08_17110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABC08_17110 PF00378 Enoyl-CoA hydratase/isomerase ABC08_17115 PF02803 Thiolase, C-terminal domain ABC08_17115 PF00108 Thiolase, N-terminal domain ABC08_17120 PF01037 Lrp/AsnC ligand binding domain ABC08_17125 PF01380 SIS domain ABC08_17130 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ABC08_17135 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17145 PF00378 Enoyl-CoA hydratase/isomerase ABC08_17150 PF13380 CoA binding domain ABC08_17150 PF13607 Succinyl-CoA ligase like flavodoxin domain ABC08_17150 PF00583 Acetyltransferase (GNAT) family ABC08_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_17155 PF03466 LysR substrate binding domain ABC08_17160 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_17160 PF00107 Zinc-binding dehydrogenase ABC08_17170 PF01042 Endoribonuclease L-PSP ABC08_17180 PF07687 Peptidase dimerisation domain ABC08_17180 PF01546 Peptidase family M20/M25/M40 ABC08_17185 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_17190 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_17190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_17195 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_17195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_17195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_17200 PF01565 FAD binding domain ABC08_17200 PF09330 D-lactate dehydrogenase, membrane binding ABC08_17205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_17205 PF03466 LysR substrate binding domain ABC08_17210 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17230 PF00701 Dihydrodipicolinate synthetase family ABC08_17235 PF03466 LysR substrate binding domain ABC08_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_17240 PF02515 CoA-transferase family III ABC08_17245 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_17250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_17250 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_17255 PF01575 MaoC like domain ABC08_17270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABC08_17270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABC08_17275 PF00378 Enoyl-CoA hydratase/isomerase ABC08_17280 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_17280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_17280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_17285 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17300 PF00676 Dehydrogenase E1 component ABC08_17305 PF02780 Transketolase, C-terminal domain ABC08_17305 PF02779 Transketolase, pyrimidine binding domain ABC08_17310 PF00378 Enoyl-CoA hydratase/isomerase ABC08_17315 PF02817 e3 binding domain ABC08_17315 PF00364 Biotin-requiring enzyme ABC08_17315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABC08_17320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_17320 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_17320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_17325 PF13193 AMP-binding enzyme C-terminal domain ABC08_17325 PF00501 AMP-binding enzyme ABC08_17335 PF13458 Periplasmic binding protein ABC08_17340 PF02653 Branched-chain amino acid transport system / permease component ABC08_17345 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABC08_17345 PF00005 ABC transporter ABC08_17350 PF00005 ABC transporter ABC08_17355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABC08_17355 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_17370 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17385 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17395 PF00899 ThiF family ABC08_17400 PF13180 PDZ domain ABC08_17400 PF03572 Peptidase family S41 ABC08_17405 PF01551 Peptidase family M23 ABC08_17410 PF00300 Histidine phosphatase superfamily (branch 1) ABC08_17420 PF00462 Glutaredoxin ABC08_17425 PF02556 Preprotein translocase subunit SecB ABC08_17430 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABC08_17430 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABC08_17435 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17440 PF00588 SpoU rRNA Methylase family ABC08_17450 PF08241 Methyltransferase domain ABC08_17455 PF04107 Glutamate-cysteine ligase family 2(GCS2) ABC08_17460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABC08_17470 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_17475 PF00005 ABC transporter ABC08_17485 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_17485 PF01799 [2Fe-2S] binding domain ABC08_17490 PF00941 FAD binding domain in molybdopterin dehydrogenase ABC08_17490 PF03450 CO dehydrogenase flavoprotein C-terminal domain ABC08_17495 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABC08_17495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABC08_17500 PF03480 Bacterial extracellular solute-binding protein, family 7 ABC08_17505 PF00355 Rieske [2Fe-2S] domain ABC08_17510 PF14759 Reductase C-terminal ABC08_17510 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_17515 PF00355 Rieske [2Fe-2S] domain ABC08_17515 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABC08_17525 PF00857 Isochorismatase family ABC08_17540 PF17645 Arylmalonate decarboxylase ABC08_17550 PF12804 MobA-like NTP transferase domain ABC08_17560 PF01047 MarR family ABC08_17565 PF02386 Cation transport protein ABC08_17570 PF02080 TrkA-C domain ABC08_17570 PF02254 TrkA-N domain ABC08_17575 PF02954 Bacterial regulatory protein, Fis family ABC08_17575 PF00072 Response regulator receiver domain ABC08_17575 PF00158 Sigma-54 interaction domain ABC08_17580 PF00989 PAS fold ABC08_17580 PF00672 HAMP domain ABC08_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_17580 PF00512 His Kinase A (phospho-acceptor) domain ABC08_17590 PF01029 NusB family ABC08_17590 PF01189 16S rRNA methyltransferase RsmB/F ABC08_17600 PF03447 Homoserine dehydrogenase, NAD binding domain ABC08_17600 PF01958 Domain of unknown function DUF108 ABC08_17625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_17625 PF03466 LysR substrate binding domain ABC08_17635 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17645 PF00155 Aminotransferase class I and II ABC08_17650 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_17660 PF00682 HMGL-like ABC08_17665 PF02481 DNA recombination-mediator protein A ABC08_17665 PF17782 DprA winged helix domain ABC08_17670 PF01037 Lrp/AsnC ligand binding domain ABC08_17675 PF00266 Aminotransferase class-V ABC08_17680 PF01327 Polypeptide deformylase ABC08_17690 PF02911 Formyl transferase, C-terminal domain ABC08_17690 PF00551 Formyl transferase ABC08_17700 PF13419 Haloacid dehalogenase-like hydrolase ABC08_17710 PF03641 Possible lysine decarboxylase ABC08_17720 PF04055 Radical SAM superfamily ABC08_17720 PF18693 TRAM domain ABC08_17720 PF00919 Uncharacterized protein family UPF0004 ABC08_17725 PF01361 Tautomerase enzyme ABC08_17730 PF01266 FAD dependent oxidoreductase ABC08_17735 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17740 PF00392 Bacterial regulatory proteins, gntR family ABC08_17740 PF07729 FCD domain ABC08_17750 PF00202 Aminotransferase class-III ABC08_17755 PF00491 Arginase family ABC08_17765 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17770 PF02627 Carboxymuconolactone decarboxylase family ABC08_17775 PF00378 Enoyl-CoA hydratase/isomerase ABC08_17780 PF01614 Bacterial transcriptional regulator ABC08_17780 PF09339 IclR helix-turn-helix domain ABC08_17785 PF00501 AMP-binding enzyme ABC08_17785 PF13193 AMP-binding enzyme C-terminal domain ABC08_17790 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_17800 PF12951 Passenger-associated-transport-repeat ABC08_17800 PF12951 Passenger-associated-transport-repeat ABC08_17830 PF01168 Alanine racemase, N-terminal domain ABC08_17830 PF14031 Putative serine dehydratase domain ABC08_17835 PF07411 Domain of unknown function (DUF1508) ABC08_17840 PF01145 SPFH domain / Band 7 family ABC08_17850 PF01042 Endoribonuclease L-PSP ABC08_17895 PF03837 RecT family ABC08_17930 PF00589 Phage integrase family ABC08_17950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_17950 PF03466 LysR substrate binding domain ABC08_17965 PF02096 60Kd inner membrane protein ABC08_17965 PF14849 YidC periplasmic domain ABC08_17970 PF01809 Putative membrane protein insertion efficiency factor ABC08_17975 PF00825 Ribonuclease P ABC08_17980 PF00468 Ribosomal protein L34 ABC08_17985 PF08299 Bacterial dnaA protein helix-turn-helix ABC08_17985 PF00308 Bacterial dnaA protein ABC08_17985 PF11638 DnaA N-terminal domain ABC08_17990 PF00712 DNA polymerase III beta subunit, N-terminal domain ABC08_17990 PF02767 DNA polymerase III beta subunit, central domain ABC08_17990 PF02768 DNA polymerase III beta subunit, C-terminal domain ABC08_17995 PF00986 DNA gyrase B subunit, carboxyl terminus ABC08_17995 PF01751 Toprim domain ABC08_17995 PF18053 DNA gyrase B subunit insert domain ABC08_17995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_17995 PF00204 DNA gyrase B ABC08_18000 PF09339 IclR helix-turn-helix domain ABC08_18000 PF01614 Bacterial transcriptional regulator ABC08_18005 PF01425 Amidase ABC08_18010 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18020 PF01070 FMN-dependent dehydrogenase ABC08_18045 PF02770 Acyl-CoA dehydrogenase, middle domain ABC08_18045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABC08_18045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABC08_18050 PF09278 MerR, DNA binding ABC08_18050 PF00376 MerR family regulatory protein ABC08_18075 PF00108 Thiolase, N-terminal domain ABC08_18075 PF02803 Thiolase, C-terminal domain ABC08_18080 PF01039 Carboxyl transferase domain ABC08_18085 PF00289 Biotin carboxylase, N-terminal domain ABC08_18085 PF02785 Biotin carboxylase C-terminal domain ABC08_18085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABC08_18085 PF00364 Biotin-requiring enzyme ABC08_18095 PF00202 Aminotransferase class-III ABC08_18100 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18105 PF01168 Alanine racemase, N-terminal domain ABC08_18105 PF14031 Putative serine dehydratase domain ABC08_18110 PF16868 NMT1-like family ABC08_18120 PF07715 TonB-dependent Receptor Plug Domain ABC08_18120 PF00593 TonB dependent receptor ABC08_18125 PF04361 Protein of unknown function (DUF494) ABC08_18140 PF01751 Toprim domain ABC08_18140 PF01131 DNA topoisomerase ABC08_18150 PF00005 ABC transporter ABC08_18155 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_18165 PF00171 Aldehyde dehydrogenase family ABC08_18175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABC08_18175 PF00205 Thiamine pyrophosphate enzyme, central domain ABC08_18175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC08_18180 PF01037 Lrp/AsnC ligand binding domain ABC08_18185 PF01062 Bestrophin, RFP-TM, chloride channel ABC08_18195 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABC08_18210 PF00809 Pterin binding enzyme ABC08_18210 PF02574 Homocysteine S-methyltransferase ABC08_18210 PF02310 B12 binding domain ABC08_18210 PF02607 B12 binding domain ABC08_18210 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABC08_18215 PF00593 TonB dependent receptor ABC08_18215 PF07715 TonB-dependent Receptor Plug Domain ABC08_18220 PF01497 Periplasmic binding protein ABC08_18225 PF05690 Thiazole biosynthesis protein ThiG ABC08_18230 PF08543 Phosphomethylpyrimidine kinase ABC08_18245 PF02321 Outer membrane efflux protein ABC08_18250 PF01467 Cytidylyltransferase-like ABC08_18260 PF01594 AI-2E family transporter ABC08_18270 PF07885 Ion channel ABC08_18270 PF02254 TrkA-N domain ABC08_18280 PF00164 Ribosomal protein S12/S23 ABC08_18285 PF00177 Ribosomal protein S7p/S5e ABC08_18290 PF00679 Elongation factor G C-terminus ABC08_18290 PF03144 Elongation factor Tu domain 2 ABC08_18290 PF03764 Elongation factor G, domain IV ABC08_18290 PF00009 Elongation factor Tu GTP binding domain ABC08_18290 PF14492 Elongation Factor G, domain II ABC08_18295 PF00009 Elongation factor Tu GTP binding domain ABC08_18295 PF03143 Elongation factor Tu C-terminal domain ABC08_18295 PF03144 Elongation factor Tu domain 2 ABC08_18300 PF00338 Ribosomal protein S10p/S20e ABC08_18305 PF00297 Ribosomal protein L3 ABC08_18310 PF00573 Ribosomal protein L4/L1 family ABC08_18315 PF00276 Ribosomal protein L23 ABC08_18320 PF03947 Ribosomal Proteins L2, C-terminal domain ABC08_18320 PF00181 Ribosomal Proteins L2, RNA binding domain ABC08_18325 PF00203 Ribosomal protein S19 ABC08_18330 PF00237 Ribosomal protein L22p/L17e ABC08_18335 PF00189 Ribosomal protein S3, C-terminal domain ABC08_18335 PF07650 KH domain ABC08_18340 PF00252 Ribosomal protein L16p/L10e ABC08_18345 PF00831 Ribosomal L29 protein ABC08_18350 PF00366 Ribosomal protein S17 ABC08_18360 PF00171 Aldehyde dehydrogenase family ABC08_18370 PF00238 Ribosomal protein L14p/L23e ABC08_18375 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABC08_18380 PF00281 Ribosomal protein L5 ABC08_18380 PF00673 ribosomal L5P family C-terminus ABC08_18385 PF00253 Ribosomal protein S14p/S29e ABC08_18390 PF00410 Ribosomal protein S8 ABC08_18395 PF00347 Ribosomal protein L6 ABC08_18400 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABC08_18405 PF00333 Ribosomal protein S5, N-terminal domain ABC08_18405 PF03719 Ribosomal protein S5, C-terminal domain ABC08_18410 PF00327 Ribosomal protein L30p/L7e ABC08_18415 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABC08_18420 PF00344 SecY translocase ABC08_18425 PF01176 Translation initiation factor 1A / IF-1 ABC08_18430 PF00444 Ribosomal protein L36 ABC08_18435 PF00416 Ribosomal protein S13/S18 ABC08_18440 PF00411 Ribosomal protein S11 ABC08_18445 PF00163 Ribosomal protein S4/S9 N-terminal domain ABC08_18445 PF01479 S4 domain ABC08_18450 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABC08_18450 PF01000 RNA polymerase Rpb3/RpoA insert domain ABC08_18450 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABC08_18465 PF03091 CutA1 divalent ion tolerance protein ABC08_18470 PF11412 Disulphide bond corrector protein DsbC ABC08_18470 PF02683 Cytochrome C biogenesis protein transmembrane region ABC08_18475 PF00892 EamA-like transporter family ABC08_18480 PF00490 Delta-aminolevulinic acid dehydratase ABC08_18485 PF01926 50S ribosome-binding GTPase ABC08_18490 PF00034 Cytochrome c ABC08_18495 PF05140 ResB-like family ABC08_18500 PF01578 Cytochrome C assembly protein ABC08_18505 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABC08_18505 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABC08_18510 PF01491 Frataxin-like domain ABC08_18515 PF17092 Penicillin-binding protein OB-like domain ABC08_18515 PF00912 Transglycosylase ABC08_18515 PF00905 Penicillin binding protein transpeptidase domain ABC08_18520 PF01202 Shikimate kinase ABC08_18525 PF01761 3-dehydroquinate synthase ABC08_18530 PF13286 Phosphohydrolase-associated domain ABC08_18530 PF01966 HD domain ABC08_18535 PF13417 Glutathione S-transferase, N-terminal domain ABC08_18535 PF00043 Glutathione S-transferase, C-terminal domain ABC08_18540 PF17755 UvrA DNA-binding domain ABC08_18540 PF17760 UvrA interaction domain ABC08_18545 PF07690 Major Facilitator Superfamily ABC08_18550 PF00436 Single-strand binding protein family ABC08_18555 PF00593 TonB dependent receptor ABC08_18555 PF07715 TonB-dependent Receptor Plug Domain ABC08_18565 PF03328 HpcH/HpaI aldolase/citrate lyase family ABC08_18575 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_18585 PF03466 LysR substrate binding domain ABC08_18595 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18600 PF13439 Glycosyltransferase Family 4 ABC08_18600 PF00534 Glycosyl transferases group 1 ABC08_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_18610 PF03466 LysR substrate binding domain ABC08_18620 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_18625 PF00005 ABC transporter ABC08_18645 PF01274 Malate synthase ABC08_18665 PF01040 UbiA prenyltransferase family ABC08_18670 PF00155 Aminotransferase class I and II ABC08_18675 PF13185 GAF domain ABC08_18680 PF00701 Dihydrodipicolinate synthetase family ABC08_18690 PF01476 LysM domain ABC08_18690 PF04972 BON domain ABC08_18695 PF05690 Thiazole biosynthesis protein ThiG ABC08_18695 PF02597 ThiS family ABC08_18700 PF00561 alpha/beta hydrolase fold ABC08_18705 PF02390 Putative methyltransferase ABC08_18720 PF00682 HMGL-like ABC08_18725 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18740 PF00392 Bacterial regulatory proteins, gntR family ABC08_18740 PF07702 UTRA domain ABC08_18745 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18755 PF00392 Bacterial regulatory proteins, gntR family ABC08_18755 PF07702 UTRA domain ABC08_18760 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_18770 PF00005 ABC transporter ABC08_18775 PF00378 Enoyl-CoA hydratase/isomerase ABC08_18780 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_18785 PF00698 Acyl transferase domain ABC08_18785 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_18785 PF00109 Beta-ketoacyl synthase, N-terminal domain ABC08_18785 PF16197 Ketoacyl-synthetase C-terminal extension ABC08_18785 PF00550 Phosphopantetheine attachment site ABC08_18785 PF02801 Beta-ketoacyl synthase, C-terminal domain ABC08_18785 PF08659 KR domain ABC08_18785 PF14765 Polyketide synthase dehydratase ABC08_18785 PF08990 Erythronolide synthase docking ABC08_18790 PF02515 CoA-transferase family III ABC08_18795 PF00440 Bacterial regulatory proteins, tetR family ABC08_18800 PF00293 NUDIX domain ABC08_18800 PF09297 NADH pyrophosphatase zinc ribbon domain ABC08_18805 PF00970 Oxidoreductase FAD-binding domain ABC08_18805 PF00175 Oxidoreductase NAD-binding domain ABC08_18805 PF00111 2Fe-2S iron-sulfur cluster binding domain ABC08_18810 PF01425 Amidase ABC08_18820 PF03466 LysR substrate binding domain ABC08_18820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABC08_18825 PF13458 Periplasmic binding protein ABC08_18835 PF00005 ABC transporter ABC08_18850 PF02653 Branched-chain amino acid transport system / permease component ABC08_18875 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABC08_18875 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABC08_18890 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABC08_18890 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABC08_18890 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABC08_18895 PF07690 Major Facilitator Superfamily ABC08_18900 PF14602 Hexapeptide repeat of succinyl-transferase ABC08_18900 PF00132 Bacterial transferase hexapeptide (six repeats) ABC08_18900 PF12804 MobA-like NTP transferase domain ABC08_18920 PF02630 SCO1/SenC ABC08_18925 PF01040 UbiA prenyltransferase family ABC08_18930 PF02628 Cytochrome oxidase assembly protein ABC08_18950 PF00510 Cytochrome c oxidase subunit III ABC08_18965 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABC08_18970 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABC08_18970 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ABC08_18980 PF00999 Sodium/hydrogen exchanger family ABC08_18985 PF00149 Calcineurin-like phosphoesterase ABC08_18990 PF04542 Sigma-70 region 2 ABC08_18990 PF00140 Sigma-70 factor, region 1.2 ABC08_18990 PF04545 Sigma-70, region 4 ABC08_19000 PF00756 Putative esterase ABC08_19005 PF00107 Zinc-binding dehydrogenase ABC08_19005 PF08240 Alcohol dehydrogenase GroES-like domain ABC08_19015 PF04898 Glutamate synthase central domain ABC08_19015 PF01493 GXGXG motif ABC08_19015 PF01645 Conserved region in glutamate synthase ABC08_19015 PF00310 Glutamine amidotransferases class-II ABC08_19020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABC08_19020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABC08_19025 PF03922 OmpW family ABC08_19030 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_19035 PF00005 ABC transporter ABC08_19040 PF02405 Permease MlaE ABC08_19045 PF02470 MlaD protein ABC08_19050 PF04333 MlaA lipoprotein ABC08_19065 PF01061 ABC-2 type transporter ABC08_19075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABC08_19080 PF01634 ATP phosphoribosyltransferase ABC08_19085 PF00815 Histidinol dehydrogenase ABC08_19090 PF00155 Aminotransferase class I and II ABC08_19095 PF00475 Imidazoleglycerol-phosphate dehydratase ABC08_19100 PF00117 Glutamine amidotransferase class-I ABC08_19105 PF00977 Histidine biosynthesis protein ABC08_19110 PF00977 Histidine biosynthesis protein ABC08_19115 PF01502 Phosphoribosyl-AMP cyclohydrolase ABC08_19120 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ABC08_19125 PF01230 HIT domain ABC08_19130 PF02416 mttA/Hcf106 family ABC08_19135 PF02416 mttA/Hcf106 family ABC08_19140 PF00902 Sec-independent protein translocase protein (TatC) ABC08_19150 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_19155 PF02917 Pertussis toxin, subunit 1 ABC08_19160 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain ABC08_19160 PF03440 Aerolysin/Pertussis toxin (APT) domain ABC08_19165 PF09275 Pertussis toxin S4 subunit ABC08_19170 PF09276 Pertussis toxin S5 subunit ABC08_19175 PF03440 Aerolysin/Pertussis toxin (APT) domain ABC08_19175 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain ABC08_19180 PF04956 TrbC/VIRB2 family ABC08_19185 PF05101 Type IV secretory pathway, VirB3-like protein ABC08_19190 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ABC08_19195 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ABC08_19205 PF04335 VirB8 protein ABC08_19210 PF03524 Conjugal transfer protein ABC08_19215 PF03743 Bacterial conjugation TrbI-like protein ABC08_19220 PF00437 Type II/IV secretion system protein ABC08_19230 PF00892 EamA-like transporter family ABC08_19250 PF01926 50S ribosome-binding GTPase ABC08_19250 PF10396 GTP-binding protein TrmE N-terminus ABC08_19250 PF12631 MnmE helical domain ABC08_19255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_19265 PF12911 N-terminal TM domain of oligopeptide transport permease C ABC08_19265 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_19270 PF00005 ABC transporter ABC08_19270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_19280 PF01960 ArgJ family ABC08_19290 PF00293 NUDIX domain ABC08_19310 PF02321 Outer membrane efflux protein ABC08_19315 PF00873 AcrB/AcrD/AcrF family ABC08_19320 PF00873 AcrB/AcrD/AcrF family ABC08_19325 PF13533 Biotin-lipoyl like ABC08_19330 PF07072 Cell division protein ABC08_19335 PF01121 Dephospho-CoA kinase ABC08_19340 PF06750 Bacterial Peptidase A24 N-terminal domain ABC08_19340 PF01478 Type IV leader peptidase family ABC08_19355 PF02569 Pantoate-beta-alanine ligase ABC08_19360 PF02616 Segregation and condensation protein ScpA ABC08_19370 PF07690 Major Facilitator Superfamily ABC08_19375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABC08_19375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABC08_19385 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_19390 PF00005 ABC transporter ABC08_19395 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_19400 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_19405 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABC08_19410 PF00005 ABC transporter ABC08_19415 PF18075 FtsX extracellular domain ABC08_19420 PF03975 CheD chemotactic sensory transduction ABC08_19430 PF10576 Iron-sulfur binding domain of endonuclease III ABC08_19430 PF00633 Helix-hairpin-helix motif ABC08_19430 PF00730 HhH-GPD superfamily base excision DNA repair protein ABC08_19430 PF14815 NUDIX domain ABC08_19440 PF08241 Methyltransferase domain ABC08_19450 PF02515 CoA-transferase family III ABC08_19455 PF02515 CoA-transferase family III ABC08_19465 PF03401 Tripartite tricarboxylate transporter family receptor ABC08_19470 PF00378 Enoyl-CoA hydratase/isomerase ABC08_19485 PF00682 HMGL-like ABC08_19490 PF00378 Enoyl-CoA hydratase/isomerase ABC08_19495 PF02515 CoA-transferase family III ABC08_19510 PF06628 Catalase-related immune-responsive ABC08_19510 PF00199 Catalase ABC08_19515 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_19520 PF00005 ABC transporter ABC08_19530 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABC08_19535 PF01546 Peptidase family M20/M25/M40 ABC08_19535 PF07687 Peptidase dimerisation domain ABC08_19540 PF00005 ABC transporter ABC08_19540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_19545 PF00005 ABC transporter ABC08_19545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABC08_19550 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_19550 PF12911 N-terminal TM domain of oligopeptide transport permease C ABC08_19555 PF00528 Binding-protein-dependent transport system inner membrane component ABC08_19560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABC08_19565 PF12631 MnmE helical domain ABC08_19565 PF10396 GTP-binding protein TrmE N-terminus ABC08_19565 PF01926 50S ribosome-binding GTPase ABC08_19575 PF00486 Transcriptional regulatory protein, C terminal ABC08_19575 PF00072 Response regulator receiver domain ABC08_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC08_19580 PF00672 HAMP domain ABC08_19580 PF00512 His Kinase A (phospho-acceptor) domain ABC08_19595 PF01970 Tripartite tricarboxylate transporter TctA family ABC08_19600 PF00155 Aminotransferase class I and II ABC08_19605 PF00313 'Cold-shock' DNA-binding domain