locus-tag class description JJB98_00025 PF01925 Sulfite exporter TauE/SafE JJB98_00035 PF12706 Beta-lactamase superfamily domain JJB98_00040 PF00892 EamA-like transporter family JJB98_00045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_00045 PF03466 LysR substrate binding domain JJB98_00055 PF00343 Carbohydrate phosphorylase JJB98_00065 PF01293 Phosphoenolpyruvate carboxykinase JJB98_00080 PF00486 Transcriptional regulatory protein, C terminal JJB98_00080 PF00072 Response regulator receiver domain JJB98_00085 PF13755 Sensor N-terminal transmembrane domain JJB98_00085 PF00512 His Kinase A (phospho-acceptor) domain JJB98_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_00085 PF00672 HAMP domain JJB98_00085 PF13756 Stimulus-sensing domain JJB98_00095 PF03610 PTS system fructose IIA component JJB98_00095 PF03830 PTS system sorbose subfamily IIB component JJB98_00100 PF00381 PTS HPr component phosphorylation site JJB98_00110 PF00679 Elongation factor G C-terminus JJB98_00110 PF00009 Elongation factor Tu GTP binding domain JJB98_00110 PF03144 Elongation factor Tu domain 2 JJB98_00110 PF06421 GTP-binding protein LepA C-terminus JJB98_00135 PF01425 Amidase JJB98_00140 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JJB98_00140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_00145 PF03411 Penicillin-insensitive murein endopeptidase JJB98_00155 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_00160 PF00005 ABC transporter JJB98_00160 PF03459 TOBE domain JJB98_00170 PF02080 TrkA-C domain JJB98_00170 PF03471 Transporter associated domain JJB98_00170 PF00999 Sodium/hydrogen exchanger family JJB98_00180 PF00557 Metallopeptidase family M24 JJB98_00185 PF02805 Metal binding domain of Ada JJB98_00185 PF06029 AlkA N-terminal domain JJB98_00185 PF12833 Helix-turn-helix domain JJB98_00185 PF00730 HhH-GPD superfamily base excision DNA repair protein JJB98_00195 PF04002 RadC-like JAB domain JJB98_00200 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_00205 PF16864 Dimerisation domain JJB98_00205 PF00891 O-methyltransferase domain JJB98_00225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_00225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_00230 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_00235 PF00005 ABC transporter JJB98_00250 PF13505 Outer membrane protein beta-barrel domain JJB98_00255 PF00571 CBS domain JJB98_00255 PF01595 Cyclin M transmembrane N-terminal domain JJB98_00255 PF03471 Transporter associated domain JJB98_00260 PF01645 Conserved region in glutamate synthase JJB98_00265 PF00175 Oxidoreductase NAD-binding domain JJB98_00265 PF00970 Oxidoreductase FAD-binding domain JJB98_00270 PF08443 RimK-like ATP-grasp domain JJB98_00270 PF18030 RimK PreATP-grasp domain JJB98_00275 PF00107 Zinc-binding dehydrogenase JJB98_00275 PF16884 N-terminal domain of oxidoreductase JJB98_00290 PF01494 FAD binding domain JJB98_00295 PF00501 AMP-binding enzyme JJB98_00295 PF13193 AMP-binding enzyme C-terminal domain JJB98_00305 PF13417 Glutathione S-transferase, N-terminal domain JJB98_00310 PF07883 Cupin domain JJB98_00320 PF00005 ABC transporter JJB98_00330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJB98_00330 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_00335 PF03466 LysR substrate binding domain JJB98_00335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_00345 PF00378 Enoyl-CoA hydratase/isomerase JJB98_00360 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_00360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_00360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_00365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_00370 PF01979 Amidohydrolase family JJB98_00375 PF03466 LysR substrate binding domain JJB98_00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_00400 PF03737 Aldolase/RraA JJB98_00405 PF13193 AMP-binding enzyme C-terminal domain JJB98_00405 PF00501 AMP-binding enzyme JJB98_00415 PF02558 Ketopantoate reductase PanE/ApbA JJB98_00415 PF08546 Ketopantoate reductase PanE/ApbA C terminal JJB98_00440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_00440 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_00440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_00445 PF00378 Enoyl-CoA hydratase/isomerase JJB98_00450 PF13607 Succinyl-CoA ligase like flavodoxin domain JJB98_00450 PF13380 CoA binding domain JJB98_00460 PF00378 Enoyl-CoA hydratase/isomerase JJB98_00480 PF00083 Sugar (and other) transporter JJB98_00480 PF07690 Major Facilitator Superfamily JJB98_00485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJB98_00485 PF06481 COX Aromatic Rich Motif JJB98_00490 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_00495 PF00510 Cytochrome c oxidase subunit III JJB98_00500 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JJB98_00510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_00510 PF00512 His Kinase A (phospho-acceptor) domain JJB98_00515 PF00072 Response regulator receiver domain JJB98_00525 PF01638 HxlR-like helix-turn-helix JJB98_00535 PF00037 4Fe-4S binding domain JJB98_00535 PF11953 Domain of unknown function (DUF3470) JJB98_00545 PF00271 Helicase conserved C-terminal domain JJB98_00545 PF08148 DSHCT (NUC185) domain JJB98_00545 PF00270 DEAD/DEAH box helicase JJB98_00555 PF00830 Ribosomal L28 family JJB98_00560 PF13289 SIR2-like domain JJB98_00580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJB98_00590 PF11775 Cobalamin biosynthesis protein CobT VWA domain JJB98_00590 PF06213 Cobalamin biosynthesis protein CobT JJB98_00595 PF08406 CbbQ/NirQ/NorQ C-terminal JJB98_00595 PF12556 Cobaltochelatase CobS subunit N terminal JJB98_00595 PF07728 AAA domain (dynein-related subfamily) JJB98_00605 PF00285 Citrate synthase, C-terminal domain JJB98_00610 PF00285 Citrate synthase, C-terminal domain JJB98_00615 PF00226 DnaJ domain JJB98_00620 PF01722 BolA-like protein JJB98_00625 PF01595 Cyclin M transmembrane N-terminal domain JJB98_00625 PF03471 Transporter associated domain JJB98_00625 PF00571 CBS domain JJB98_00630 PF01761 3-dehydroquinate synthase JJB98_00635 PF01202 Shikimate kinase JJB98_00645 PF00589 Phage integrase family JJB98_00645 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_00650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JJB98_00655 PF03734 L,D-transpeptidase catalytic domain JJB98_00660 PF07516 SecA Wing and Scaffold domain JJB98_00660 PF02810 SEC-C motif JJB98_00660 PF01043 SecA preprotein cross-linking domain JJB98_00660 PF07517 SecA DEAD-like domain JJB98_00670 PF01960 ArgJ family JJB98_00675 PF00293 NUDIX domain JJB98_00680 PF13649 Methyltransferase domain JJB98_00685 PF00156 Phosphoribosyl transferase domain JJB98_00690 PF00462 Glutaredoxin JJB98_00695 PF00795 Carbon-nitrogen hydrolase JJB98_00725 PF13840 ACT domain JJB98_00725 PF01842 ACT domain JJB98_00725 PF00696 Amino acid kinase family JJB98_00730 PF00391 PEP-utilising enzyme, mobile domain JJB98_00730 PF01590 GAF domain JJB98_00730 PF05524 PEP-utilising enzyme, N-terminal JJB98_00730 PF02896 PEP-utilising enzyme, TIM barrel domain JJB98_00735 PF03462 PCRF domain JJB98_00735 PF00472 RF-1 domain JJB98_00755 PF02653 Branched-chain amino acid transport system / permease component JJB98_00760 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_00760 PF00005 ABC transporter JJB98_00765 PF00005 ABC transporter JJB98_00770 PF01230 HIT domain JJB98_00775 PF17827 PrmC N-terminal domain JJB98_00775 PF05175 Methyltransferase small domain JJB98_00785 PF08241 Methyltransferase domain JJB98_00790 PF00753 Metallo-beta-lactamase superfamily JJB98_00790 PF16123 Hydroxyacylglutathione hydrolase C-terminus JJB98_00800 PF00892 EamA-like transporter family JJB98_00810 PF02803 Thiolase, C-terminal domain JJB98_00810 PF00108 Thiolase, N-terminal domain JJB98_00815 PF07879 PHB/PHA accumulation regulator DNA-binding domain JJB98_00815 PF05233 PHB accumulation regulatory domain JJB98_00825 PF01063 Amino-transferase class IV JJB98_00830 PF07859 alpha/beta hydrolase fold JJB98_00845 PF01037 Lrp/AsnC ligand binding domain JJB98_00850 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_00855 PF00271 Helicase conserved C-terminal domain JJB98_00855 PF00270 DEAD/DEAH box helicase JJB98_00855 PF00570 HRDC domain JJB98_00855 PF16124 RecQ zinc-binding JJB98_00855 PF09382 RQC domain JJB98_00865 PF04204 Homoserine O-succinyltransferase JJB98_00870 PF01053 Cys/Met metabolism PLP-dependent enzyme JJB98_00875 PF01425 Amidase JJB98_00890 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_00895 PF00005 ABC transporter JJB98_00905 PF01425 Amidase JJB98_00910 PF01266 FAD dependent oxidoreductase JJB98_00915 PF00171 Aldehyde dehydrogenase family JJB98_00920 PF14031 Putative serine dehydratase domain JJB98_00920 PF01168 Alanine racemase, N-terminal domain JJB98_00940 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_00940 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_00945 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_00950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_00955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_00955 PF00005 ABC transporter JJB98_00960 PF01266 FAD dependent oxidoreductase JJB98_00965 PF01037 Lrp/AsnC ligand binding domain JJB98_00970 PF00202 Aminotransferase class-III JJB98_00980 PF00171 Aldehyde dehydrogenase family JJB98_00990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_01010 PF00593 TonB dependent receptor JJB98_01010 PF07715 TonB-dependent Receptor Plug Domain JJB98_01060 PF00145 C-5 cytosine-specific DNA methylase JJB98_01065 PF03852 DNA mismatch endonuclease Vsr JJB98_01100 PF01381 Helix-turn-helix JJB98_01140 PF00982 Glycosyltransferase family 20 JJB98_01145 PF02358 Trehalose-phosphatase JJB98_01150 PF00083 Sugar (and other) transporter JJB98_01160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_01160 PF08269 Cache domain JJB98_01165 PF08269 Cache domain JJB98_01165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_01170 PF01799 [2Fe-2S] binding domain JJB98_01170 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_01175 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_01175 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_01180 PF03450 CO dehydrogenase flavoprotein C-terminal domain JJB98_01180 PF00941 FAD binding domain in molybdopterin dehydrogenase JJB98_01185 PF02515 CoA-transferase family III JJB98_01190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_01195 PF01037 Lrp/AsnC ligand binding domain JJB98_01200 PF06906 Protein of unknown function (DUF1272) JJB98_01210 PF04209 homogentisate 1,2-dioxygenase JJB98_01225 PF01494 FAD binding domain JJB98_01245 PF00691 OmpA family JJB98_01245 PF05736 OprF membrane domain JJB98_01255 PF00873 AcrB/AcrD/AcrF family JJB98_01265 PF13545 Crp-like helix-turn-helix domain JJB98_01265 PF00027 Cyclic nucleotide-binding domain JJB98_01275 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_01275 PF00672 HAMP domain JJB98_01285 PF01381 Helix-turn-helix JJB98_01300 PF00990 Diguanylate cyclase, GGDEF domain JJB98_01300 PF08447 PAS fold JJB98_01300 PF08448 PAS fold JJB98_01300 PF00563 EAL domain JJB98_01320 PF10282 Lactonase, 7-bladed beta-propeller JJB98_01345 PF00266 Aminotransferase class-V JJB98_01355 PF03062 MBOAT, membrane-bound O-acyltransferase family JJB98_01360 PF00326 Prolyl oligopeptidase family JJB98_01360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJB98_01365 PF03737 Aldolase/RraA JJB98_01370 PF00920 Dehydratase family JJB98_01380 PF00005 ABC transporter JJB98_01390 PF07729 FCD domain JJB98_01390 PF00392 Bacterial regulatory proteins, gntR family JJB98_01395 PF00196 Bacterial regulatory proteins, luxR family JJB98_01395 PF00072 Response regulator receiver domain JJB98_01400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_01400 PF13426 PAS domain JJB98_01400 PF00072 Response regulator receiver domain JJB98_01405 PF00196 Bacterial regulatory proteins, luxR family JJB98_01405 PF00072 Response regulator receiver domain JJB98_01415 PF01339 CheB methylesterase JJB98_01415 PF00072 Response regulator receiver domain JJB98_01425 PF03705 CheR methyltransferase, all-alpha domain JJB98_01425 PF01739 CheR methyltransferase, SAM binding domain JJB98_01430 PF00072 Response regulator receiver domain JJB98_01430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_01435 PF01584 CheW-like domain JJB98_01440 PF01584 CheW-like domain JJB98_01440 PF00072 Response regulator receiver domain JJB98_01440 PF01627 Hpt domain JJB98_01440 PF02895 Signal transducing histidine kinase, homodimeric domain JJB98_01440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_01445 PF00072 Response regulator receiver domain JJB98_01470 PF00196 Bacterial regulatory proteins, luxR family JJB98_01480 PF00563 EAL domain JJB98_01480 PF00990 Diguanylate cyclase, GGDEF domain JJB98_01480 PF03707 Bacterial signalling protein N terminal repeat JJB98_01500 PF00829 Ribosomal prokaryotic L21 protein JJB98_01505 PF01016 Ribosomal L27 protein JJB98_01510 PF13302 Acetyltransferase (GNAT) domain JJB98_01525 PF01018 GTP1/OBG JJB98_01525 PF01926 50S ribosome-binding GTPase JJB98_01530 PF16347 Domain of unknown function (DUF4976) JJB98_01530 PF00884 Sulfatase JJB98_01535 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_01540 PF00696 Amino acid kinase family JJB98_01540 PF01472 PUA domain JJB98_01550 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JJB98_01555 PF00171 Aldehyde dehydrogenase family JJB98_01560 PF01467 Cytidylyltransferase-like JJB98_01570 PF02590 Predicted SPOUT methyltransferase JJB98_01580 PF03572 Peptidase family S41 JJB98_01580 PF13180 PDZ domain JJB98_01590 PF00293 NUDIX domain JJB98_01595 PF00293 NUDIX domain JJB98_01600 PF00118 TCP-1/cpn60 chaperonin family JJB98_01605 PF00166 Chaperonin 10 Kd subunit JJB98_01610 PF13439 Glycosyltransferase Family 4 JJB98_01615 PF04545 Sigma-70, region 4 JJB98_01615 PF04542 Sigma-70 region 2 JJB98_01615 PF00140 Sigma-70 factor, region 1.2 JJB98_01620 PF00011 Hsp20/alpha crystallin family JJB98_01625 PF00011 Hsp20/alpha crystallin family JJB98_01635 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JJB98_01640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJB98_01640 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJB98_01645 PF00231 ATP synthase JJB98_01650 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJB98_01650 PF00306 ATP synthase alpha/beta chain, C terminal domain JJB98_01650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJB98_01655 PF00213 ATP synthase delta (OSCP) subunit JJB98_01660 PF03330 Lytic transglycolase JJB98_01665 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JJB98_01665 PF18074 Primosomal protein N C-terminal domain JJB98_01665 PF17764 3′ DNA-binding domain (3′BD) JJB98_01665 PF00270 DEAD/DEAH box helicase JJB98_01670 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_01670 PF00589 Phage integrase family JJB98_01685 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_01685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJB98_01695 PF02817 e3 binding domain JJB98_01695 PF00364 Biotin-requiring enzyme JJB98_01695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJB98_01700 PF16870 2-oxoglutarate dehydrogenase C-terminal JJB98_01700 PF16078 2-oxoglutarate dehydrogenase N-terminus JJB98_01700 PF00676 Dehydrogenase E1 component JJB98_01700 PF02779 Transketolase, pyrimidine binding domain JJB98_01705 PF02629 CoA binding domain JJB98_01705 PF00549 CoA-ligase JJB98_01715 PF08442 ATP-grasp domain JJB98_01715 PF00549 CoA-ligase JJB98_01720 PF00056 lactate/malate dehydrogenase, NAD binding domain JJB98_01720 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JJB98_01725 PF03969 AFG1-like ATPase JJB98_01735 PF02834 LigT like Phosphoesterase JJB98_01740 PF13472 GDSL-like Lipase/Acylhydrolase family JJB98_01745 PF00005 ABC transporter JJB98_01750 PF00005 ABC transporter JJB98_01750 PF02687 FtsX-like permease family JJB98_01750 PF12704 MacB-like periplasmic core domain JJB98_01755 PF01027 Inhibitor of apoptosis-promoting Bax1 JJB98_01775 PF00694 Aconitase C-terminal domain JJB98_01775 PF00330 Aconitase family (aconitate hydratase) JJB98_01780 PF00005 ABC transporter JJB98_01785 PF03379 CcmB protein JJB98_01790 PF01578 Cytochrome C assembly protein JJB98_01795 PF04995 Heme exporter protein D (CcmD) JJB98_01800 PF08534 Redoxin JJB98_01805 PF04279 Intracellular septation protein A JJB98_01810 PF02881 SRP54-type protein, helical bundle domain JJB98_01810 PF00448 SRP54-type protein, GTPase domain JJB98_01815 PF00849 RNA pseudouridylate synthase JJB98_01825 PF00919 Uncharacterized protein family UPF0004 JJB98_01825 PF04055 Radical SAM superfamily JJB98_01830 PF01678 Diaminopimelate epimerase JJB98_01845 PF12706 Beta-lactamase superfamily domain JJB98_01850 PF00448 SRP54-type protein, GTPase domain JJB98_01850 PF02881 SRP54-type protein, helical bundle domain JJB98_01850 PF02978 Signal peptide binding domain JJB98_01855 PF00886 Ribosomal protein S16 JJB98_01860 PF05239 PRC-barrel domain JJB98_01860 PF01782 RimM N-terminal domain JJB98_01865 PF01746 tRNA (Guanine-1)-methyltransferase JJB98_01870 PF01245 Ribosomal protein L19 JJB98_01875 PF00330 Aconitase family (aconitate hydratase) JJB98_01905 PF00694 Aconitase C-terminal domain JJB98_01920 PF13419 Haloacid dehalogenase-like hydrolase JJB98_01925 PF03328 HpcH/HpaI aldolase/citrate lyase family JJB98_01930 PF00484 Carbonic anhydrase JJB98_01935 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJB98_01935 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJB98_01950 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_01960 PF00174 Oxidoreductase molybdopterin binding domain JJB98_01965 PF01292 Prokaryotic cytochrome b561 JJB98_01980 PF13193 AMP-binding enzyme C-terminal domain JJB98_01980 PF00501 AMP-binding enzyme JJB98_01990 PF01925 Sulfite exporter TauE/SafE JJB98_01995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JJB98_02005 PF00890 FAD binding domain JJB98_02005 PF02910 Fumarate reductase flavoprotein C-term JJB98_02010 PF13237 4Fe-4S dicluster domain JJB98_02010 PF13085 2Fe-2S iron-sulfur cluster binding domain JJB98_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_02015 PF13426 PAS domain JJB98_02015 PF00072 Response regulator receiver domain JJB98_02040 PF00764 Arginosuccinate synthase JJB98_02045 PF01569 PAP2 superfamily JJB98_02055 PF04055 Radical SAM superfamily JJB98_02070 PF00550 Phosphopantetheine attachment site JJB98_02070 PF00698 Acyl transferase domain JJB98_02070 PF08659 KR domain JJB98_02070 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_02070 PF14765 Polyketide synthase dehydratase JJB98_02070 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_02070 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_02070 PF00107 Zinc-binding dehydrogenase JJB98_02070 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_02080 PF01329 Pterin 4 alpha carbinolamine dehydratase JJB98_02095 PF00072 Response regulator receiver domain JJB98_02110 PF00679 Elongation factor G C-terminus JJB98_02110 PF03144 Elongation factor Tu domain 2 JJB98_02110 PF00009 Elongation factor Tu GTP binding domain JJB98_02115 PF01593 Flavin containing amine oxidoreductase JJB98_02120 PF04134 Protein of unknown function, DUF393 JJB98_02140 PF00583 Acetyltransferase (GNAT) family JJB98_02145 PF00719 Inorganic pyrophosphatase JJB98_02150 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JJB98_02150 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JJB98_02155 PF02594 Uncharacterised ACR, YggU family COG1872 JJB98_02160 PF02325 YGGT family JJB98_02170 PF00378 Enoyl-CoA hydratase/isomerase JJB98_02175 PF00117 Glutamine amidotransferase class-I JJB98_02180 PF00106 short chain dehydrogenase JJB98_02195 PF00067 Cytochrome P450 JJB98_02205 PF05977 Transmembrane secretion effector JJB98_02220 PF01522 Polysaccharide deacetylase JJB98_02250 PF00814 Glycoprotease family JJB98_02255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JJB98_02255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JJB98_02270 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_02285 PF16177 Acetyl-coenzyme A synthetase N-terminus JJB98_02285 PF13193 AMP-binding enzyme C-terminal domain JJB98_02285 PF00501 AMP-binding enzyme JJB98_02290 PF17969 L,D-transpeptidase C-terminal domain JJB98_02290 PF03734 L,D-transpeptidase catalytic domain JJB98_02290 PF01476 LysM domain JJB98_02300 PF08269 Cache domain JJB98_02300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_02310 PF01507 Phosphoadenosine phosphosulfate reductase family JJB98_02315 PF00009 Elongation factor Tu GTP binding domain JJB98_02325 PF01029 NusB family JJB98_02325 PF01189 16S rRNA methyltransferase RsmB/F JJB98_02335 PF01808 AICARFT/IMPCHase bienzyme JJB98_02335 PF02142 MGS-like domain JJB98_02350 PF07690 Major Facilitator Superfamily JJB98_02365 PF01554 MatE JJB98_02375 PF08546 Ketopantoate reductase PanE/ApbA C terminal JJB98_02375 PF02558 Ketopantoate reductase PanE/ApbA JJB98_02385 PF07995 Glucose / Sorbosone dehydrogenase JJB98_02390 PF16363 GDP-mannose 4,6 dehydratase JJB98_02400 PF00085 Thioredoxin JJB98_02425 PF03966 Trm112p-like protein JJB98_02430 PF01494 FAD binding domain JJB98_02460 PF00543 Nitrogen regulatory protein P-II JJB98_02465 PF00909 Ammonium Transporter Family JJB98_02470 PF01022 Bacterial regulatory protein, arsR family JJB98_02480 PF00574 Clp protease JJB98_02485 PF00543 Nitrogen regulatory protein P-II JJB98_02490 PF00909 Ammonium Transporter Family JJB98_02500 PF00155 Aminotransferase class I and II JJB98_02505 PF01580 FtsK/SpoIIIE family JJB98_02505 PF17854 FtsK alpha domain JJB98_02505 PF09397 Ftsk gamma domain JJB98_02505 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JJB98_02510 PF03548 Outer membrane lipoprotein carrier protein LolA JJB98_02525 PF00072 Response regulator receiver domain JJB98_02525 PF00486 Transcriptional regulatory protein, C terminal JJB98_02540 PF01168 Alanine racemase, N-terminal domain JJB98_02545 PF01590 GAF domain JJB98_02545 PF00563 EAL domain JJB98_02545 PF00360 Phytochrome region JJB98_02545 PF00990 Diguanylate cyclase, GGDEF domain JJB98_02555 PF13603 Leucyl-tRNA synthetase, Domain 2 JJB98_02555 PF00133 tRNA synthetases class I (I, L, M and V) JJB98_02555 PF08264 Anticodon-binding domain of tRNA JJB98_02555 PF09334 tRNA synthetases class I (M) JJB98_02570 PF02195 ParB-like nuclease domain JJB98_02570 PF17762 HTH domain found in ParB protein JJB98_02575 PF13614 AAA domain JJB98_02580 PF02527 rRNA small subunit methyltransferase G JJB98_02585 PF01134 Glucose inhibited division protein A JJB98_02585 PF13932 GidA associated domain JJB98_02590 PF01926 50S ribosome-binding GTPase JJB98_02590 PF12631 MnmE helical domain JJB98_02590 PF10396 GTP-binding protein TrmE N-terminus JJB98_02595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJB98_02595 PF07498 Rho termination factor, N-terminal domain JJB98_02595 PF07497 Rho termination factor, RNA-binding domain JJB98_02600 PF03653 Uncharacterised protein family (UPF0093) JJB98_02605 PF03618 Kinase/pyrophosphorylase JJB98_02610 PF02545 Maf-like protein JJB98_02615 PF01121 Dephospho-CoA kinase JJB98_02620 PF00929 Exonuclease JJB98_02625 PF02556 Preprotein translocase subunit SecB JJB98_02635 PF03562 MltA specific insert domain JJB98_02635 PF06725 3D domain JJB98_02650 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_02650 PF07724 AAA domain (Cdc48 subfamily) JJB98_02650 PF10431 C-terminal, D2-small domain, of ClpB protein JJB98_02655 PF10755 Protein of unknown function (DUF2585) JJB98_02660 PF00227 Proteasome subunit JJB98_02665 PF00475 Imidazoleglycerol-phosphate dehydratase JJB98_02675 PF00117 Glutamine amidotransferase class-I JJB98_02680 PF00977 Histidine biosynthesis protein JJB98_02685 PF00977 Histidine biosynthesis protein JJB98_02690 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JJB98_02695 PF00485 Phosphoribulokinase / Uridine kinase family JJB98_02705 PF00072 Response regulator receiver domain JJB98_02705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJB98_02705 PF00512 His Kinase A (phospho-acceptor) domain JJB98_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_02705 PF00672 HAMP domain JJB98_02705 PF01627 Hpt domain JJB98_02715 PF01078 Magnesium chelatase, subunit ChlI JJB98_02715 PF13335 Magnesium chelatase, subunit ChlI C-terminal JJB98_02740 PF04972 BON domain JJB98_02740 PF00263 Bacterial type II and III secretion system protein JJB98_02740 PF13629 Pilus formation protein N terminal region JJB98_02750 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JJB98_02750 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JJB98_02755 PF02021 Uncharacterised protein family UPF0102 JJB98_02760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_02770 PF06969 HemN C-terminal domain JJB98_02770 PF04055 Radical SAM superfamily JJB98_02775 PF01725 Ham1 family JJB98_02780 PF01138 3' exoribonuclease family, domain 1 JJB98_02780 PF03725 3' exoribonuclease family, domain 2 JJB98_02785 PF01628 HrcA protein C terminal domain JJB98_02790 PF01025 GrpE JJB98_02795 PF00857 Isochorismatase family JJB98_02805 PF00012 Hsp70 protein JJB98_02810 PF01556 DnaJ C terminal domain JJB98_02810 PF00226 DnaJ domain JJB98_02810 PF00684 DnaJ central domain JJB98_02815 PF13649 Methyltransferase domain JJB98_02820 PF03358 NADPH-dependent FMN reductase JJB98_02825 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JJB98_02835 PF05173 Dihydrodipicolinate reductase, C-terminus JJB98_02835 PF01113 Dihydrodipicolinate reductase, N-terminus JJB98_02840 PF00300 Histidine phosphatase superfamily (branch 1) JJB98_02845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJB98_02845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJB98_02855 PF00730 HhH-GPD superfamily base excision DNA repair protein JJB98_02865 PF04945 YHS domain JJB98_02870 PF02583 Metal-sensitive transcriptional repressor JJB98_02880 PF01593 Flavin containing amine oxidoreductase JJB98_02890 PF03147 Ferredoxin-fold anticodon binding domain JJB98_02890 PF01588 Putative tRNA binding domain JJB98_02890 PF03484 tRNA synthetase B5 domain JJB98_02890 PF03483 B3/4 domain JJB98_02890 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JJB98_02895 PF04480 Protein of unknown function (DUF559) JJB98_02900 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JJB98_02900 PF01409 tRNA synthetases class II core domain (F) JJB98_02905 PF00453 Ribosomal protein L20 JJB98_02910 PF01632 Ribosomal protein L35 JJB98_02915 PF05198 Translation initiation factor IF-3, N-terminal domain JJB98_02915 PF00707 Translation initiation factor IF-3, C-terminal domain JJB98_02935 PF08331 Domain of unknown function (DUF1730) JJB98_02940 PF00043 Glutathione S-transferase, C-terminal domain JJB98_02940 PF13417 Glutathione S-transferase, N-terminal domain JJB98_02945 PF02673 Bacitracin resistance protein BacA JJB98_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_02985 PF13426 PAS domain JJB98_02985 PF00072 Response regulator receiver domain JJB98_03005 PF01381 Helix-turn-helix JJB98_03040 PF07690 Major Facilitator Superfamily JJB98_03045 PF01612 3'-5' exonuclease JJB98_03045 PF00570 HRDC domain JJB98_03055 PF03968 OstA-like protein JJB98_03060 PF00005 ABC transporter JJB98_03065 PF04963 Sigma-54 factor, core binding domain JJB98_03065 PF00309 Sigma-54 factor, Activator interacting domain (AID) JJB98_03065 PF04552 Sigma-54, DNA binding domain JJB98_03070 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JJB98_03070 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JJB98_03075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJB98_03090 PF00011 Hsp20/alpha crystallin family JJB98_03095 PF00005 ABC transporter JJB98_03100 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_03105 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_03110 PF13416 Bacterial extracellular solute-binding protein JJB98_03115 PF02515 CoA-transferase family III JJB98_03120 PF02566 OsmC-like protein JJB98_03125 PF01047 MarR family JJB98_03145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JJB98_03150 PF02224 Cytidylate kinase JJB98_03155 PF00575 S1 RNA binding domain JJB98_03160 PF01343 Peptidase family S49 JJB98_03165 PF00216 Bacterial DNA-binding protein JJB98_03175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JJB98_03180 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_03185 PF00290 Tryptophan synthase alpha chain JJB98_03190 PF01039 Carboxyl transferase domain JJB98_03195 PF08245 Mur ligase middle domain JJB98_03195 PF02875 Mur ligase family, glutamate ligase domain JJB98_03200 PF04679 ATP dependent DNA ligase C terminal region JJB98_03200 PF01068 ATP dependent DNA ligase domain JJB98_03205 PF00085 Thioredoxin JJB98_03210 PF13361 UvrD-like helicase C-terminal domain JJB98_03210 PF00580 UvrD/REP helicase N-terminal domain JJB98_03210 PF12705 PD-(D/E)XK nuclease superfamily JJB98_03220 PF12804 MobA-like NTP transferase domain JJB98_03230 PF01636 Phosphotransferase enzyme family JJB98_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_03235 PF00512 His Kinase A (phospho-acceptor) domain JJB98_03240 PF00692 dUTPase JJB98_03245 PF02441 Flavoprotein JJB98_03245 PF04127 DNA / pantothenate metabolism flavoprotein JJB98_03250 PF03109 ABC1 family JJB98_03255 PF01209 ubiE/COQ5 methyltransferase family JJB98_03260 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JJB98_03260 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JJB98_03260 PF06827 Zinc finger found in FPG and IleRS JJB98_03265 PF07015 VirC1 protein JJB98_03280 PF00899 ThiF family JJB98_03285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_03285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_03295 PF01475 Ferric uptake regulator family JJB98_03300 PF07977 FabA-like domain JJB98_03305 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_03305 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_03330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_03330 PF03466 LysR substrate binding domain JJB98_03335 PF00141 Peroxidase JJB98_03340 PF00575 S1 RNA binding domain JJB98_03340 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JJB98_03340 PF01138 3' exoribonuclease family, domain 1 JJB98_03340 PF00013 KH domain JJB98_03340 PF03725 3' exoribonuclease family, domain 2 JJB98_03345 PF00312 Ribosomal protein S15 JJB98_03350 PF16198 tRNA pseudouridylate synthase B C-terminal domain JJB98_03350 PF01509 TruB family pseudouridylate synthase (N terminal domain) JJB98_03350 PF09157 Pseudouridine synthase II TruB, C-terminal JJB98_03355 PF02033 Ribosome-binding factor A JJB98_03360 PF03144 Elongation factor Tu domain 2 JJB98_03360 PF11987 Translation-initiation factor 2 JJB98_03360 PF08364 Bacterial translation initiation factor IF-2 associated region JJB98_03360 PF00009 Elongation factor Tu GTP binding domain JJB98_03360 PF04760 Translation initiation factor IF-2, N-terminal region JJB98_03370 PF00575 S1 RNA binding domain JJB98_03370 PF13184 NusA-like KH domain JJB98_03370 PF08529 NusA N-terminal domain JJB98_03375 PF02576 RimP N-terminal domain JJB98_03375 PF17384 RimP C-terminal SH3 domain JJB98_03385 PF02390 Putative methyltransferase JJB98_03395 PF01381 Helix-turn-helix JJB98_03400 PF00795 Carbon-nitrogen hydrolase JJB98_03405 PF00571 CBS domain JJB98_03405 PF03471 Transporter associated domain JJB98_03410 PF02130 Uncharacterized protein family UPF0054 JJB98_03415 PF02562 PhoH-like protein JJB98_03420 PF00919 Uncharacterized protein family UPF0004 JJB98_03420 PF04055 Radical SAM superfamily JJB98_03420 PF01938 TRAM domain JJB98_03425 PF13419 Haloacid dehalogenase-like hydrolase JJB98_03430 PF01475 Ferric uptake regulator family JJB98_03440 PF00814 Glycoprotease family JJB98_03455 PF00579 tRNA synthetases class I (W and Y) JJB98_03460 PF03023 Lipid II flippase MurJ JJB98_03465 PF00294 pfkB family carbohydrate kinase JJB98_03470 PF00501 AMP-binding enzyme JJB98_03470 PF13193 AMP-binding enzyme C-terminal domain JJB98_03475 PF00144 Beta-lactamase JJB98_03485 PF00171 Aldehyde dehydrogenase family JJB98_03495 PF01259 SAICAR synthetase JJB98_03500 PF02678 Pirin JJB98_03500 PF05726 Pirin C-terminal cupin domain JJB98_03540 PF01554 MatE JJB98_03545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JJB98_03555 PF01751 Toprim domain JJB98_03555 PF00986 DNA gyrase B subunit, carboxyl terminus JJB98_03555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_03555 PF00204 DNA gyrase B JJB98_03560 PF02463 RecF/RecN/SMC N terminal domain JJB98_03565 PF02768 DNA polymerase III beta subunit, C-terminal domain JJB98_03565 PF02767 DNA polymerase III beta subunit, central domain JJB98_03565 PF00712 DNA polymerase III beta subunit, N-terminal domain JJB98_03575 PF00308 Bacterial dnaA protein JJB98_03575 PF08299 Bacterial dnaA protein helix-turn-helix JJB98_03575 PF11638 DnaA N-terminal domain JJB98_03580 PF01649 Ribosomal protein S20 JJB98_03605 PF01738 Dienelactone hydrolase family JJB98_03615 PF00561 alpha/beta hydrolase fold JJB98_03620 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_03620 PF01799 [2Fe-2S] binding domain JJB98_03625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_03630 PF11871 Domain of unknown function (DUF3391) JJB98_03630 PF01966 HD domain JJB98_03635 PF13193 AMP-binding enzyme C-terminal domain JJB98_03635 PF00501 AMP-binding enzyme JJB98_03640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_03645 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_03665 PF01255 Putative undecaprenyl diphosphate synthase JJB98_03680 PF08448 PAS fold JJB98_03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_03680 PF08447 PAS fold JJB98_03685 PF11799 impB/mucB/samB family C-terminal domain JJB98_03685 PF00817 impB/mucB/samB family JJB98_03685 PF11798 IMS family HHH motif JJB98_03700 PF13439 Glycosyltransferase Family 4 JJB98_03700 PF00534 Glycosyl transferases group 1 JJB98_03710 PF00067 Cytochrome P450 JJB98_03710 PF00175 Oxidoreductase NAD-binding domain JJB98_03710 PF00667 FAD binding domain JJB98_03710 PF00258 Flavodoxin JJB98_03715 PF00571 CBS domain JJB98_03715 PF00005 ABC transporter JJB98_03740 PF00589 Phage integrase family JJB98_03740 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_03765 PF00012 Hsp70 protein JJB98_03770 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_03770 PF01434 Peptidase family M41 JJB98_03770 PF17862 AAA+ lid domain JJB98_03795 PF00149 Calcineurin-like phosphoesterase JJB98_03810 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_03810 PF00589 Phage integrase family JJB98_03815 PF00589 Phage integrase family JJB98_03815 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_03820 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_03820 PF00589 Phage integrase family JJB98_03845 PF07508 Recombinase JJB98_03845 PF13408 Recombinase zinc beta ribbon domain JJB98_03845 PF00239 Resolvase, N terminal domain JJB98_03855 PF00665 Integrase core domain JJB98_03865 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_03880 PF01494 FAD binding domain JJB98_03890 PF03466 LysR substrate binding domain JJB98_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_03900 PF04909 Amidohydrolase JJB98_03910 PF02515 CoA-transferase family III JJB98_03915 PF00378 Enoyl-CoA hydratase/isomerase JJB98_03945 PF02735 Ku70/Ku80 beta-barrel domain JJB98_03970 PF10503 Esterase PHB depolymerase JJB98_03985 PF04226 Transglycosylase associated protein JJB98_04000 PF03631 Virulence factor BrkB JJB98_04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_04005 PF03466 LysR substrate binding domain JJB98_04010 PF00561 alpha/beta hydrolase fold JJB98_04040 PF13298 DNA polymerase Ligase (LigD) JJB98_04040 PF04679 ATP dependent DNA ligase C terminal region JJB98_04040 PF01068 ATP dependent DNA ligase domain JJB98_04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_04065 PF00512 His Kinase A (phospho-acceptor) domain JJB98_04065 PF00672 HAMP domain JJB98_04070 PF00486 Transcriptional regulatory protein, C terminal JJB98_04070 PF00072 Response regulator receiver domain JJB98_04110 PF17158 Membrane-associated sensor, integral membrane domain JJB98_04110 PF00990 Diguanylate cyclase, GGDEF domain JJB98_04115 PF00990 Diguanylate cyclase, GGDEF domain JJB98_04115 PF00563 EAL domain JJB98_04115 PF08448 PAS fold JJB98_04115 PF08447 PAS fold JJB98_04120 PF13426 PAS domain JJB98_04120 PF00990 Diguanylate cyclase, GGDEF domain JJB98_04120 PF00563 EAL domain JJB98_04135 PF00067 Cytochrome P450 JJB98_04140 PF00296 Luciferase-like monooxygenase JJB98_04145 PF07690 Major Facilitator Superfamily JJB98_04150 PF10503 Esterase PHB depolymerase JJB98_04160 PF01638 HxlR-like helix-turn-helix JJB98_04165 PF00753 Metallo-beta-lactamase superfamily JJB98_04170 PF00128 Alpha amylase, catalytic domain JJB98_04175 PF00128 Alpha amylase, catalytic domain JJB98_04175 PF16657 Maltogenic Amylase, C-terminal domain JJB98_04185 PF00072 Response regulator receiver domain JJB98_04190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_04190 PF00512 His Kinase A (phospho-acceptor) domain JJB98_04195 PF00005 ABC transporter JJB98_04215 PF00912 Transglycosylase JJB98_04215 PF00905 Penicillin binding protein transpeptidase domain JJB98_04225 PF13458 Periplasmic binding protein JJB98_04235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJB98_04235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJB98_04240 PF01842 ACT domain JJB98_04240 PF08335 GlnD PII-uridylyltransferase JJB98_04240 PF01966 HD domain JJB98_04240 PF01909 Nucleotidyltransferase domain JJB98_04255 PF05192 MutS domain III JJB98_04255 PF01624 MutS domain I JJB98_04255 PF00488 MutS domain V JJB98_04255 PF05188 MutS domain II JJB98_04255 PF05190 MutS family domain IV JJB98_04260 PF00108 Thiolase, N-terminal domain JJB98_04260 PF02803 Thiolase, C-terminal domain JJB98_04265 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JJB98_04265 PF00775 Dioxygenase JJB98_04275 PF16591 Helical bimodular sensor domain JJB98_04275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_04275 PF00672 HAMP domain JJB98_04285 PF07690 Major Facilitator Superfamily JJB98_04290 PF13533 Biotin-lipoyl like JJB98_04300 PF01475 Ferric uptake regulator family JJB98_04310 PF04551 GcpE protein JJB98_04325 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JJB98_04330 PF00355 Rieske [2Fe-2S] domain JJB98_04340 PF00999 Sodium/hydrogen exchanger family JJB98_04365 PF00348 Polyprenyl synthetase JJB98_04370 PF00912 Transglycosylase JJB98_04375 PF01783 Ribosomal L32p protein family JJB98_04390 PF00563 EAL domain JJB98_04390 PF00990 Diguanylate cyclase, GGDEF domain JJB98_04390 PF13188 PAS domain JJB98_04390 PF03707 Bacterial signalling protein N terminal repeat JJB98_04395 PF00563 EAL domain JJB98_04395 PF00990 Diguanylate cyclase, GGDEF domain JJB98_04395 PF08447 PAS fold JJB98_04395 PF08448 PAS fold JJB98_04410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_04410 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_04410 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JJB98_04415 PF00550 Phosphopantetheine attachment site JJB98_04420 PF01048 Phosphorylase superfamily JJB98_04425 PF01008 Initiation factor 2 subunit family JJB98_04440 PF00743 Flavin-binding monooxygenase-like JJB98_04450 PF13380 CoA binding domain JJB98_04450 PF13607 Succinyl-CoA ligase like flavodoxin domain JJB98_04470 PF00501 AMP-binding enzyme JJB98_04470 PF13193 AMP-binding enzyme C-terminal domain JJB98_04475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_04475 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_04475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_04480 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_04480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_04480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_04495 PF05853 beta-keto acid cleavage enzyme JJB98_04500 PF01039 Carboxyl transferase domain JJB98_04505 PF00289 Biotin carboxylase, N-terminal domain JJB98_04505 PF02785 Biotin carboxylase C-terminal domain JJB98_04505 PF00364 Biotin-requiring enzyme JJB98_04505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_04510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_04510 PF00005 ABC transporter JJB98_04515 PF00005 ABC transporter JJB98_04515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_04520 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_04520 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_04525 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_04530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_04535 PF00501 AMP-binding enzyme JJB98_04535 PF13193 AMP-binding enzyme C-terminal domain JJB98_04540 PF00465 Iron-containing alcohol dehydrogenase JJB98_04550 PF00529 HlyD membrane-fusion protein of T1SS JJB98_04550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJB98_04555 PF00873 AcrB/AcrD/AcrF family JJB98_04560 PF01124 MAPEG family JJB98_04575 PF00005 ABC transporter JJB98_04580 PF07690 Major Facilitator Superfamily JJB98_04585 PF07969 Amidohydrolase family JJB98_04590 PF07690 Major Facilitator Superfamily JJB98_04600 PF04273 Putative phosphatase (DUF442) JJB98_04600 PF00753 Metallo-beta-lactamase superfamily JJB98_04610 PF02872 5'-nucleotidase, C-terminal domain JJB98_04610 PF00149 Calcineurin-like phosphoesterase JJB98_04645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJB98_04645 PF00326 Prolyl oligopeptidase family JJB98_04650 PF07690 Major Facilitator Superfamily JJB98_04660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_04670 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_04670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_04670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_04675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_04675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_04675 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_04680 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_04695 PF02683 Cytochrome C biogenesis protein transmembrane region JJB98_04695 PF00578 AhpC/TSA family JJB98_04695 PF17991 Thioredoxin like C-terminal domain JJB98_04700 PF02683 Cytochrome C biogenesis protein transmembrane region JJB98_04700 PF00578 AhpC/TSA family JJB98_04700 PF17991 Thioredoxin like C-terminal domain JJB98_04705 PF04545 Sigma-70, region 4 JJB98_04705 PF04542 Sigma-70 region 2 JJB98_04710 PF00486 Transcriptional regulatory protein, C terminal JJB98_04710 PF00072 Response regulator receiver domain JJB98_04715 PF11849 Domain of unknown function (DUF3369) JJB98_04720 PF00512 His Kinase A (phospho-acceptor) domain JJB98_04720 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_04725 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_04730 PF13416 Bacterial extracellular solute-binding protein JJB98_04760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_04765 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_04770 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_04770 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_04775 PF00005 ABC transporter JJB98_04775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_04785 PF01425 Amidase JJB98_04795 PF07729 FCD domain JJB98_04795 PF00392 Bacterial regulatory proteins, gntR family JJB98_04800 PF01425 Amidase JJB98_04810 PF00501 AMP-binding enzyme JJB98_04810 PF13193 AMP-binding enzyme C-terminal domain JJB98_04820 PF00067 Cytochrome P450 JJB98_04825 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_04835 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_04845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_04845 PF01261 Xylose isomerase-like TIM barrel JJB98_04850 PF00005 ABC transporter JJB98_04855 PF00005 ABC transporter JJB98_04855 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_04860 PF02653 Branched-chain amino acid transport system / permease component JJB98_04860 PF11862 Domain of unknown function (DUF3382) JJB98_04865 PF02653 Branched-chain amino acid transport system / permease component JJB98_04870 PF13458 Periplasmic binding protein JJB98_04875 PF08501 Shikimate dehydrogenase substrate binding domain JJB98_04875 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JJB98_04880 PF03466 LysR substrate binding domain JJB98_04880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_04890 PF00196 Bacterial regulatory proteins, luxR family JJB98_04890 PF03472 Autoinducer binding domain JJB98_04895 PF00765 Autoinducer synthase JJB98_04905 PF02653 Branched-chain amino acid transport system / permease component JJB98_04915 PF00005 ABC transporter JJB98_04915 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_04920 PF00005 ABC transporter JJB98_04925 PF00120 Glutamine synthetase, catalytic domain JJB98_04930 PF00355 Rieske [2Fe-2S] domain JJB98_04935 PF09339 IclR helix-turn-helix domain JJB98_04935 PF01614 Bacterial transcriptional regulator JJB98_04950 PF12833 Helix-turn-helix domain JJB98_04955 PF01202 Shikimate kinase JJB98_04960 PF13193 AMP-binding enzyme C-terminal domain JJB98_04960 PF00501 AMP-binding enzyme JJB98_04970 PF00378 Enoyl-CoA hydratase/isomerase JJB98_05005 PF16736 Single Cache-like JJB98_05005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_05005 PF00989 PAS fold JJB98_05005 PF00512 His Kinase A (phospho-acceptor) domain JJB98_05010 PF12849 PBP superfamily domain JJB98_05015 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_05020 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_05025 PF00005 ABC transporter JJB98_05030 PF01895 PhoU domain JJB98_05035 PF00486 Transcriptional regulatory protein, C terminal JJB98_05035 PF00072 Response regulator receiver domain JJB98_05045 PF00202 Aminotransferase class-III JJB98_05050 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJB98_05050 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJB98_05055 PF01430 Hsp33 protein JJB98_05060 PF04379 ApaG domain JJB98_05080 PF01053 Cys/Met metabolism PLP-dependent enzyme JJB98_05085 PF00692 dUTPase JJB98_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_05090 PF00512 His Kinase A (phospho-acceptor) domain JJB98_05090 PF00989 PAS fold JJB98_05115 PF12833 Helix-turn-helix domain JJB98_05120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJB98_05120 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJB98_05145 PF00356 Bacterial regulatory proteins, lacI family JJB98_05150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJB98_05150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJB98_05160 PF00005 ABC transporter JJB98_05165 PF02653 Branched-chain amino acid transport system / permease component JJB98_05175 PF00248 Aldo/keto reductase family JJB98_05190 PF08241 Methyltransferase domain JJB98_05200 PF01068 ATP dependent DNA ligase domain JJB98_05200 PF04675 DNA ligase N terminus JJB98_05200 PF04679 ATP dependent DNA ligase C terminal region JJB98_05210 PF00753 Metallo-beta-lactamase superfamily JJB98_05220 PF01180 Dihydroorotate dehydrogenase JJB98_05245 PF00440 Bacterial regulatory proteins, tetR family JJB98_05250 PF00596 Class II Aldolase and Adducin N-terminal domain JJB98_05255 PF02558 Ketopantoate reductase PanE/ApbA JJB98_05255 PF08546 Ketopantoate reductase PanE/ApbA C terminal JJB98_05260 PF01921 tRNA synthetases class I (K) JJB98_05265 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_05270 PF02630 SCO1/SenC JJB98_05285 PF00890 FAD binding domain JJB98_05295 PF01042 Endoribonuclease L-PSP JJB98_05305 PF00271 Helicase conserved C-terminal domain JJB98_05305 PF00270 DEAD/DEAH box helicase JJB98_05305 PF08494 DEAD/H associated JJB98_05325 PF00156 Phosphoribosyl transferase domain JJB98_05330 PF02798 Glutathione S-transferase, N-terminal domain JJB98_05330 PF00043 Glutathione S-transferase, C-terminal domain JJB98_05335 PF01810 LysE type translocator JJB98_05340 PF00476 DNA polymerase family A JJB98_05340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JJB98_05340 PF01612 3'-5' exonuclease JJB98_05340 PF01367 5'-3' exonuclease, C-terminal SAM fold JJB98_05350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JJB98_05350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JJB98_05350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JJB98_05355 PF00271 Helicase conserved C-terminal domain JJB98_05355 PF04408 Helicase associated domain (HA2) JJB98_05355 PF08482 ATP-dependent helicase C-terminal JJB98_05355 PF00270 DEAD/DEAH box helicase JJB98_05365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJB98_05365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJB98_05365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJB98_05365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJB98_05375 PF13404 AsnC-type helix-turn-helix domain JJB98_05375 PF01037 Lrp/AsnC ligand binding domain JJB98_05380 PF00294 pfkB family carbohydrate kinase JJB98_05385 PF09297 NADH pyrophosphatase zinc ribbon domain JJB98_05385 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JJB98_05385 PF00293 NUDIX domain JJB98_05400 PF12169 DNA polymerase III subunits gamma and tau domain III JJB98_05400 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JJB98_05400 PF12170 DNA polymerase III tau subunit V interacting with alpha JJB98_05405 PF02575 YbaB/EbfC DNA-binding family JJB98_05410 PF13662 Toprim domain JJB98_05410 PF02132 RecR protein JJB98_05420 PF07690 Major Facilitator Superfamily JJB98_05425 PF02646 RmuC family JJB98_05430 PF01327 Polypeptide deformylase JJB98_05435 PF00551 Formyl transferase JJB98_05435 PF02911 Formyl transferase, C-terminal domain JJB98_05440 PF01416 tRNA pseudouridine synthase JJB98_05445 PF01546 Peptidase family M20/M25/M40 JJB98_05445 PF07687 Peptidase dimerisation domain JJB98_05450 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_05450 PF14602 Hexapeptide repeat of succinyl-transferase JJB98_05450 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JJB98_05465 PF00696 Amino acid kinase family JJB98_05475 PF01926 50S ribosome-binding GTPase JJB98_05480 PF14849 YidC periplasmic domain JJB98_05480 PF02096 60Kd inner membrane protein JJB98_05485 PF00825 Ribonuclease P JJB98_05490 PF00468 Ribosomal protein L34 JJB98_05495 PF00989 PAS fold JJB98_05495 PF00512 His Kinase A (phospho-acceptor) domain JJB98_05495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_05505 PF01242 6-pyruvoyl tetrahydropterin synthase JJB98_05525 PF03466 LysR substrate binding domain JJB98_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_05545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_05580 PF00296 Luciferase-like monooxygenase JJB98_05595 PF04055 Radical SAM superfamily JJB98_05595 PF08497 Radical SAM N-terminal JJB98_05595 PF11842 Domain of unknown function (DUF3362) JJB98_05605 PF00392 Bacterial regulatory proteins, gntR family JJB98_05605 PF07729 FCD domain JJB98_05610 PF01565 FAD binding domain JJB98_05610 PF02913 FAD linked oxidases, C-terminal domain JJB98_05615 PF00701 Dihydrodipicolinate synthetase family JJB98_05620 PF07715 TonB-dependent Receptor Plug Domain JJB98_05635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_05635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_05640 PF17862 AAA+ lid domain JJB98_05640 PF01434 Peptidase family M41 JJB98_05640 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_05650 PF00378 Enoyl-CoA hydratase/isomerase JJB98_05655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_05655 PF00672 HAMP domain JJB98_05660 PF00701 Dihydrodipicolinate synthetase family JJB98_05675 PF06299 Protein of unknown function (DUF1045) JJB98_05680 PF07969 Amidohydrolase family JJB98_05685 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_05690 PF00005 ABC transporter JJB98_05700 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_05705 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_05710 PF07702 UTRA domain JJB98_05710 PF00392 Bacterial regulatory proteins, gntR family JJB98_05715 PF06754 Phosphonate metabolism protein PhnG JJB98_05720 PF05845 Bacterial phosphonate metabolism protein (PhnH) JJB98_05725 PF05861 Bacterial phosphonate metabolism protein (PhnI) JJB98_05730 PF06007 Phosphonate metabolism protein PhnJ JJB98_05735 PF00005 ABC transporter JJB98_05740 PF00005 ABC transporter JJB98_05745 PF07969 Amidohydrolase family JJB98_05750 PF00625 Guanylate kinase JJB98_05770 PF00561 alpha/beta hydrolase fold JJB98_05775 PF01053 Cys/Met metabolism PLP-dependent enzyme JJB98_05815 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_05820 PF01613 Flavin reductase like domain JJB98_05825 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_05830 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_05840 PF04909 Amidohydrolase JJB98_05845 PF00296 Luciferase-like monooxygenase JJB98_05860 PF01207 Dihydrouridine synthase (Dus) JJB98_05900 PF13192 Thioredoxin domain JJB98_05900 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_05915 PF00561 alpha/beta hydrolase fold JJB98_05925 PF00815 Histidinol dehydrogenase JJB98_05930 PF06793 Uncharacterised protein family (UPF0262) JJB98_05935 PF01451 Low molecular weight phosphotyrosine protein phosphatase JJB98_05940 PF02545 Maf-like protein JJB98_05945 PF03884 DNA gyrase inhibitor YacG JJB98_05975 PF01381 Helix-turn-helix JJB98_06020 PF00571 CBS domain JJB98_06035 PF13188 PAS domain JJB98_06035 PF03707 Bacterial signalling protein N terminal repeat JJB98_06035 PF00563 EAL domain JJB98_06035 PF00990 Diguanylate cyclase, GGDEF domain JJB98_06050 PF01593 Flavin containing amine oxidoreductase JJB98_06060 PF00857 Isochorismatase family JJB98_06080 PF00248 Aldo/keto reductase family JJB98_06110 PF16868 NMT1-like family JJB98_06135 PF00999 Sodium/hydrogen exchanger family JJB98_06145 PF00501 AMP-binding enzyme JJB98_06145 PF13193 AMP-binding enzyme C-terminal domain JJB98_06145 PF16177 Acetyl-coenzyme A synthetase N-terminus JJB98_06160 PF02401 LytB protein JJB98_06165 PF01636 Phosphotransferase enzyme family JJB98_06170 PF00075 RNase H JJB98_06175 PF08534 Redoxin JJB98_06175 PF00462 Glutaredoxin JJB98_06185 PF00501 AMP-binding enzyme JJB98_06185 PF13193 AMP-binding enzyme C-terminal domain JJB98_06190 PF07943 Penicillin-binding protein 5, C-terminal domain JJB98_06190 PF00768 D-alanyl-D-alanine carboxypeptidase JJB98_06195 PF00664 ABC transporter transmembrane region JJB98_06195 PF00005 ABC transporter JJB98_06205 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JJB98_06210 PF09335 SNARE associated Golgi protein JJB98_06220 PF00206 Lyase JJB98_06220 PF10415 Fumarase C C-terminus JJB98_06235 PF00501 AMP-binding enzyme JJB98_06235 PF13193 AMP-binding enzyme C-terminal domain JJB98_06265 PF10397 Adenylosuccinate lyase C-terminus JJB98_06265 PF00206 Lyase JJB98_06270 PF02073 Thermophilic metalloprotease (M29) JJB98_06300 PF13732 Domain of unknown function (DUF4162) JJB98_06300 PF00005 ABC transporter JJB98_06305 PF02653 Branched-chain amino acid transport system / permease component JJB98_06315 PF00005 ABC transporter JJB98_06315 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_06320 PF00005 ABC transporter JJB98_06325 PF00501 AMP-binding enzyme JJB98_06330 PF13458 Periplasmic binding protein JJB98_06350 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_06360 PF01425 Amidase JJB98_06370 PF00664 ABC transporter transmembrane region JJB98_06370 PF00005 ABC transporter JJB98_06375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJB98_06375 PF00529 HlyD membrane-fusion protein of T1SS JJB98_06380 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus JJB98_06380 PF01048 Phosphorylase superfamily JJB98_06390 PF00994 Probable molybdopterin binding domain JJB98_06390 PF02464 Competence-damaged protein JJB98_06390 PF18146 Damage-inducible protein CinA KH domain JJB98_06410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_06410 PF03466 LysR substrate binding domain JJB98_06425 PF00378 Enoyl-CoA hydratase/isomerase JJB98_06440 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_06440 PF00107 Zinc-binding dehydrogenase JJB98_06460 PF01425 Amidase JJB98_06475 PF00561 alpha/beta hydrolase fold JJB98_06490 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_06495 PF00753 Metallo-beta-lactamase superfamily JJB98_06515 PF00171 Aldehyde dehydrogenase family JJB98_06530 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_06530 PF00072 Response regulator receiver domain JJB98_06535 PF13193 AMP-binding enzyme C-terminal domain JJB98_06535 PF00501 AMP-binding enzyme JJB98_06540 PF07690 Major Facilitator Superfamily JJB98_06550 PF00561 alpha/beta hydrolase fold JJB98_06565 PF13280 WYL domain JJB98_06565 PF08279 HTH domain JJB98_06575 PF00378 Enoyl-CoA hydratase/isomerase JJB98_06580 PF07885 Ion channel JJB98_06580 PF00027 Cyclic nucleotide-binding domain JJB98_06615 PF17171 Glutathione S-transferase, C-terminal domain JJB98_06615 PF17172 Glutathione S-transferase N-terminal domain JJB98_06630 PF00106 short chain dehydrogenase JJB98_06635 PF08659 KR domain JJB98_06635 PF13193 AMP-binding enzyme C-terminal domain JJB98_06635 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_06635 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_06635 PF14765 Polyketide synthase dehydratase JJB98_06635 PF00550 Phosphopantetheine attachment site JJB98_06635 PF00668 Condensation domain JJB98_06635 PF00501 AMP-binding enzyme JJB98_06635 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_06640 PF00378 Enoyl-CoA hydratase/isomerase JJB98_06660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_06675 PF01494 FAD binding domain JJB98_06685 PF03466 LysR substrate binding domain JJB98_06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_06695 PF00005 ABC transporter JJB98_06700 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_06700 PF00005 ABC transporter JJB98_06715 PF05161 MOFRL family JJB98_06715 PF13660 Domain of unknown function (DUF4147) JJB98_06740 PF02653 Branched-chain amino acid transport system / permease component JJB98_06740 PF11862 Domain of unknown function (DUF3382) JJB98_06745 PF02653 Branched-chain amino acid transport system / permease component JJB98_06750 PF00005 ABC transporter JJB98_06755 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_06755 PF00005 ABC transporter JJB98_06760 PF09339 IclR helix-turn-helix domain JJB98_06765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_06765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_06765 PF00378 Enoyl-CoA hydratase/isomerase JJB98_06770 PF13193 AMP-binding enzyme C-terminal domain JJB98_06770 PF00501 AMP-binding enzyme JJB98_06775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_06775 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_06775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_06780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_06780 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_06780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_06790 PF04480 Protein of unknown function (DUF559) JJB98_06795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJB98_06795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJB98_06815 PF02310 B12 binding domain JJB98_06815 PF00809 Pterin binding enzyme JJB98_06815 PF02965 Vitamin B12 dependent methionine synthase, activation domain JJB98_06815 PF02607 B12 binding domain JJB98_06815 PF02574 Homocysteine S-methyltransferase JJB98_06820 PF02219 Methylenetetrahydrofolate reductase JJB98_06825 PF00296 Luciferase-like monooxygenase JJB98_06830 PF00800 Prephenate dehydratase JJB98_06830 PF01817 Chorismate mutase type II JJB98_06835 PF02348 Cytidylyltransferase JJB98_06840 PF00034 Cytochrome c JJB98_06845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_06850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_06855 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_06860 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_06860 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_06865 PF00005 ABC transporter JJB98_06865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_06870 PF00877 NlpC/P60 family JJB98_06875 PF00883 Cytosol aminopeptidase family, catalytic domain JJB98_06875 PF02789 Cytosol aminopeptidase family, N-terminal domain JJB98_06900 PF00437 Type II/IV secretion system protein JJB98_06915 PF04972 BON domain JJB98_06915 PF00263 Bacterial type II and III secretion system protein JJB98_06915 PF13629 Pilus formation protein N terminal region JJB98_06950 PF00313 'Cold-shock' DNA-binding domain JJB98_06955 PF01176 Translation initiation factor 1A / IF-1 JJB98_06960 PF00270 DEAD/DEAH box helicase JJB98_06960 PF00271 Helicase conserved C-terminal domain JJB98_06970 PF02653 Branched-chain amino acid transport system / permease component JJB98_06980 PF00005 ABC transporter JJB98_06980 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_06985 PF00005 ABC transporter JJB98_06990 PF01774 UreD urease accessory protein JJB98_06995 PF00547 Urease, gamma subunit JJB98_07000 PF00699 Urease beta subunit JJB98_07005 PF13291 ACT domain JJB98_07005 PF04607 Region found in RelA / SpoT proteins JJB98_07005 PF02824 TGS domain JJB98_07010 PF00449 Urease alpha-subunit, N-terminal domain JJB98_07010 PF01979 Amidohydrolase family JJB98_07020 PF02814 UreE urease accessory protein, N-terminal domain JJB98_07020 PF05194 UreE urease accessory protein, C-terminal domain JJB98_07025 PF01730 UreF JJB98_07030 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJB98_07035 PF07536 HWE histidine kinase JJB98_07035 PF13426 PAS domain JJB98_07065 PF03734 L,D-transpeptidase catalytic domain JJB98_07065 PF17969 L,D-transpeptidase C-terminal domain JJB98_07080 PF05532 CsbD-like JJB98_07085 PF01274 Malate synthase JJB98_07090 PF00009 Elongation factor Tu GTP binding domain JJB98_07095 PF01507 Phosphoadenosine phosphosulfate reductase family JJB98_07100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_07100 PF14824 Sirohaem biosynthesis protein central JJB98_07100 PF10414 Sirohaem synthase dimerisation region JJB98_07110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJB98_07110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJB98_07120 PF01507 Phosphoadenosine phosphosulfate reductase family JJB98_07140 PF01925 Sulfite exporter TauE/SafE JJB98_07155 PF02622 Uncharacterized ACR, COG1678 JJB98_07160 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JJB98_07175 PF05532 CsbD-like JJB98_07185 PF13406 Transglycosylase SLT domain JJB98_07190 PF00483 Nucleotidyl transferase JJB98_07195 PF00563 EAL domain JJB98_07195 PF00360 Phytochrome region JJB98_07195 PF01590 GAF domain JJB98_07195 PF00990 Diguanylate cyclase, GGDEF domain JJB98_07205 PF03707 Bacterial signalling protein N terminal repeat JJB98_07205 PF00990 Diguanylate cyclase, GGDEF domain JJB98_07205 PF00563 EAL domain JJB98_07210 PF00550 Phosphopantetheine attachment site JJB98_07210 PF00698 Acyl transferase domain JJB98_07210 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_07210 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_07210 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_07210 PF08659 KR domain JJB98_07210 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_07210 PF14765 Polyketide synthase dehydratase JJB98_07225 PF01197 Ribosomal protein L31 JJB98_07230 PF00005 ABC transporter JJB98_07230 PF00664 ABC transporter transmembrane region JJB98_07245 PF00691 OmpA family JJB98_07245 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJB98_07255 PF00529 HlyD membrane-fusion protein of T1SS JJB98_07255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJB98_07260 PF00873 AcrB/AcrD/AcrF family JJB98_07265 PF00459 Inositol monophosphatase family JJB98_07280 PF00274 Fructose-bisphosphate aldolase class-I JJB98_07285 PF01116 Fructose-bisphosphate aldolase class-II JJB98_07290 PF00162 Phosphoglycerate kinase JJB98_07295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJB98_07295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJB98_07300 PF02779 Transketolase, pyrimidine binding domain JJB98_07300 PF00456 Transketolase, thiamine diphosphate binding domain JJB98_07300 PF02780 Transketolase, C-terminal domain JJB98_07325 PF13277 YmdB-like protein JJB98_07345 PF13426 PAS domain JJB98_07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_07345 PF00512 His Kinase A (phospho-acceptor) domain JJB98_07345 PF13493 Domain of unknown function (DUF4118) JJB98_07345 PF00989 PAS fold JJB98_07345 PF08447 PAS fold JJB98_07350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_07350 PF00672 HAMP domain JJB98_07355 PF17200 Single Cache domain 2 JJB98_07355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_07355 PF00672 HAMP domain JJB98_07360 PF01709 Transcriptional regulator JJB98_07365 PF02075 Crossover junction endodeoxyribonuclease RuvC JJB98_07370 PF07499 RuvA, C-terminal domain JJB98_07370 PF01330 RuvA N terminal domain JJB98_07375 PF05491 RuvB C-terminal winged helix domain JJB98_07375 PF05496 Holliday junction DNA helicase RuvB P-loop domain JJB98_07375 PF17864 RuvB AAA lid domain JJB98_07380 PF00149 Calcineurin-like phosphoesterase JJB98_07380 PF10518 TAT (twin-arginine translocation) pathway signal sequence JJB98_07385 PF03061 Thioesterase superfamily JJB98_07395 PF00958 GMP synthase C terminal domain JJB98_07395 PF00117 Glutamine amidotransferase class-I JJB98_07400 PF03466 LysR substrate binding domain JJB98_07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_07410 PF00005 ABC transporter JJB98_07410 PF08402 TOBE domain JJB98_07415 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_07420 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_07425 PF01266 FAD dependent oxidoreductase JJB98_07435 PF04324 BFD-like [2Fe-2S] binding domain JJB98_07435 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_07450 PF00375 Sodium:dicarboxylate symporter family JJB98_07450 PF00375 Sodium:dicarboxylate symporter family JJB98_07455 PF00860 Permease family JJB98_07465 PF02146 Sir2 family JJB98_07480 PF02798 Glutathione S-transferase, N-terminal domain JJB98_07480 PF00043 Glutathione S-transferase, C-terminal domain JJB98_07485 PF00440 Bacterial regulatory proteins, tetR family JJB98_07490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_07495 PF03795 YCII-related domain JJB98_07500 PF04542 Sigma-70 region 2 JJB98_07500 PF08281 Sigma-70, region 4 JJB98_07525 PF03795 YCII-related domain JJB98_07535 PF00440 Bacterial regulatory proteins, tetR family JJB98_07545 PF03572 Peptidase family S41 JJB98_07545 PF13180 PDZ domain JJB98_07560 PF01618 MotA/TolQ/ExbB proton channel family JJB98_07565 PF02472 Biopolymer transport protein ExbD/TolR JJB98_07575 PF04052 TolB amino-terminal domain JJB98_07575 PF07676 WD40-like Beta Propeller Repeat JJB98_07580 PF00563 EAL domain JJB98_07580 PF00990 Diguanylate cyclase, GGDEF domain JJB98_07580 PF08447 PAS fold JJB98_07580 PF08448 PAS fold JJB98_07590 PF00691 OmpA family JJB98_07600 PF01171 PP-loop family JJB98_07605 PF06480 FtsH Extracellular JJB98_07605 PF01434 Peptidase family M41 JJB98_07605 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_07605 PF17862 AAA+ lid domain JJB98_07615 PF01209 ubiE/COQ5 methyltransferase family JJB98_07620 PF00535 Glycosyl transferase family 2 JJB98_07645 PF17925 Tetracyclin repressor-like, C-terminal domain JJB98_07645 PF00440 Bacterial regulatory proteins, tetR family JJB98_07650 PF00224 Pyruvate kinase, barrel domain JJB98_07650 PF02887 Pyruvate kinase, alpha/beta domain JJB98_07665 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) JJB98_07675 PF01471 Putative peptidoglycan binding domain JJB98_07675 PF03734 L,D-transpeptidase catalytic domain JJB98_07680 PF02954 Bacterial regulatory protein, Fis family JJB98_07680 PF00158 Sigma-54 interaction domain JJB98_07680 PF00072 Response regulator receiver domain JJB98_07705 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJB98_07705 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJB98_07710 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JJB98_07715 PF02233 NAD(P) transhydrogenase beta subunit JJB98_07730 PF01699 Sodium/calcium exchanger protein JJB98_07735 PF07883 Cupin domain JJB98_07750 PF01165 Ribosomal protein S21 JJB98_07755 PF00230 Major intrinsic protein JJB98_07760 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JJB98_07760 PF02222 ATP-grasp domain JJB98_07765 PF00731 AIR carboxylase JJB98_07770 PF00990 Diguanylate cyclase, GGDEF domain JJB98_07770 PF05231 MASE1 JJB98_07770 PF00563 EAL domain JJB98_07770 PF13426 PAS domain JJB98_07770 PF08448 PAS fold JJB98_07770 PF08447 PAS fold JJB98_07800 PF01266 FAD dependent oxidoreductase JJB98_07805 PF13188 PAS domain JJB98_07805 PF03707 Bacterial signalling protein N terminal repeat JJB98_07805 PF00990 Diguanylate cyclase, GGDEF domain JJB98_07805 PF00563 EAL domain JJB98_07815 PF08402 TOBE domain JJB98_07815 PF00005 ABC transporter JJB98_07820 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_07825 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_07830 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_07835 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_07845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_07845 PF03466 LysR substrate binding domain JJB98_07850 PF04303 PrpF protein JJB98_07860 PF01144 Coenzyme A transferase JJB98_07865 PF01144 Coenzyme A transferase JJB98_07870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_07870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_07875 PF00672 HAMP domain JJB98_07875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_07875 PF17200 Single Cache domain 2 JJB98_07875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_07875 PF17200 Single Cache domain 2 JJB98_07875 PF00672 HAMP domain JJB98_07880 PF00892 EamA-like transporter family JJB98_07895 PF00709 Adenylosuccinate synthetase JJB98_07940 PF01641 SelR domain JJB98_07945 PF01625 Peptide methionine sulfoxide reductase JJB98_07950 PF13538 UvrD-like helicase C-terminal domain JJB98_07955 PF00296 Luciferase-like monooxygenase JJB98_07970 PF12146 Serine aminopeptidase, S33 JJB98_07970 PF13026 Protein of unknown function (DUF3887) JJB98_07990 PF03734 L,D-transpeptidase catalytic domain JJB98_07990 PF17969 L,D-transpeptidase C-terminal domain JJB98_08005 PF09383 NIL domain JJB98_08005 PF00005 ABC transporter JJB98_08015 PF00067 Cytochrome P450 JJB98_08020 PF01613 Flavin reductase like domain JJB98_08030 PF01546 Peptidase family M20/M25/M40 JJB98_08030 PF07687 Peptidase dimerisation domain JJB98_08035 PF02954 Bacterial regulatory protein, Fis family JJB98_08035 PF00158 Sigma-54 interaction domain JJB98_08040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JJB98_08050 PF14842 FliG N-terminal domain JJB98_08050 PF14841 FliG middle domain JJB98_08050 PF01706 FliG C-terminal domain JJB98_08055 PF01514 Secretory protein of YscJ/FliF family JJB98_08055 PF08345 Flagellar M-ring protein C-terminal JJB98_08080 PF08241 Methyltransferase domain JJB98_08095 PF00665 Integrase core domain JJB98_08165 PF01011 PQQ enzyme repeat JJB98_08200 PF01048 Phosphorylase superfamily JJB98_08205 PF01370 NAD dependent epimerase/dehydratase family JJB98_08220 PF12823 Domain of unknown function (DUF3817) JJB98_08220 PF03176 MMPL family JJB98_08230 PF07043 Protein of unknown function (DUF1328) JJB98_08235 PF01699 Sodium/calcium exchanger protein JJB98_08250 PF00356 Bacterial regulatory proteins, lacI family JJB98_08255 PF01547 Bacterial extracellular solute-binding protein JJB98_08260 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_08265 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_08270 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_08270 PF00107 Zinc-binding dehydrogenase JJB98_08275 PF00005 ABC transporter JJB98_08275 PF08402 TOBE domain JJB98_08280 PF00294 pfkB family carbohydrate kinase JJB98_08285 PF01791 DeoC/LacD family aldolase JJB98_08295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_08300 PF00296 Luciferase-like monooxygenase JJB98_08315 PF13458 Periplasmic binding protein JJB98_08320 PF02653 Branched-chain amino acid transport system / permease component JJB98_08325 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_08325 PF00005 ABC transporter JJB98_08330 PF00005 ABC transporter JJB98_08345 PF00144 Beta-lactamase JJB98_08355 PF13419 Haloacid dehalogenase-like hydrolase JJB98_08365 PF03786 D-mannonate dehydratase (UxuA) JJB98_08370 PF01177 Asp/Glu/Hydantoin racemase JJB98_08375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_08375 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_08375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_08380 PF01266 FAD dependent oxidoreductase JJB98_08395 PF01614 Bacterial transcriptional regulator JJB98_08395 PF09339 IclR helix-turn-helix domain JJB98_08400 PF00890 FAD binding domain JJB98_08410 PF00011 Hsp20/alpha crystallin family JJB98_08415 PF00011 Hsp20/alpha crystallin family JJB98_08440 PF03328 HpcH/HpaI aldolase/citrate lyase family JJB98_08445 PF01575 MaoC like domain JJB98_08450 PF02515 CoA-transferase family III JJB98_08455 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_08465 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_08470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_08470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_08470 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_08475 PF00501 AMP-binding enzyme JJB98_08475 PF13193 AMP-binding enzyme C-terminal domain JJB98_08480 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JJB98_08480 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JJB98_08485 PF00501 AMP-binding enzyme JJB98_08485 PF07993 Male sterility protein JJB98_08485 PF00550 Phosphopantetheine attachment site JJB98_08485 PF00668 Condensation domain JJB98_08485 PF13193 AMP-binding enzyme C-terminal domain JJB98_08495 PF02735 Ku70/Ku80 beta-barrel domain JJB98_08500 PF04679 ATP dependent DNA ligase C terminal region JJB98_08500 PF13298 DNA polymerase Ligase (LigD) JJB98_08500 PF01068 ATP dependent DNA ligase domain JJB98_08515 PF00128 Alpha amylase, catalytic domain JJB98_08520 PF11941 Domain of unknown function (DUF3459) JJB98_08520 PF00128 Alpha amylase, catalytic domain JJB98_08520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJB98_08525 PF00128 Alpha amylase, catalytic domain JJB98_08525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJB98_08530 PF02806 Alpha amylase, C-terminal all-beta domain JJB98_08530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJB98_08530 PF00128 Alpha amylase, catalytic domain JJB98_08535 PF00128 Alpha amylase, catalytic domain JJB98_08535 PF16657 Maltogenic Amylase, C-terminal domain JJB98_08540 PF11896 Domain of unknown function (DUF3416) JJB98_08540 PF00128 Alpha amylase, catalytic domain JJB98_08545 PF02446 4-alpha-glucanotransferase JJB98_08550 PF00723 Glycosyl hydrolases family 15 JJB98_08565 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JJB98_08570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JJB98_08570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JJB98_08575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JJB98_08575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_08580 PF00923 Transaldolase/Fructose-6-phosphate aldolase JJB98_08590 PF06798 PrkA serine protein kinase C-terminal domain JJB98_08590 PF08298 PrkA AAA domain JJB98_08595 PF04285 Protein of unknown function (DUF444) JJB98_08600 PF04293 SpoVR like protein JJB98_08635 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_08645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_08650 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JJB98_08650 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JJB98_08650 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JJB98_08655 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_08655 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JJB98_08655 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJB98_08665 PF00561 alpha/beta hydrolase fold JJB98_08670 PF13186 Iron-sulfur cluster-binding domain JJB98_08670 PF04055 Radical SAM superfamily JJB98_08675 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JJB98_08680 PF03070 TENA/THI-4/PQQC family JJB98_08685 PF12706 Beta-lactamase superfamily domain JJB98_08690 PF08042 PqqA family JJB98_08700 PF01425 Amidase JJB98_08705 PF00255 Glutathione peroxidase JJB98_08715 PF13378 Enolase C-terminal domain-like JJB98_08735 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_08745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_08760 PF00999 Sodium/hydrogen exchanger family JJB98_08770 PF04185 Phosphoesterase family JJB98_08775 PF03150 Di-haem cytochrome c peroxidase JJB98_08800 PF13378 Enolase C-terminal domain-like JJB98_08800 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JJB98_08805 PF06445 GyrI-like small molecule binding domain JJB98_08805 PF12833 Helix-turn-helix domain JJB98_08820 PF05199 GMC oxidoreductase JJB98_08820 PF00732 GMC oxidoreductase JJB98_08840 PF01434 Peptidase family M41 JJB98_08840 PF17862 AAA+ lid domain JJB98_08840 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_08860 PF00581 Rhodanese-like domain JJB98_08870 PF03734 L,D-transpeptidase catalytic domain JJB98_08870 PF01476 LysM domain JJB98_08875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_08875 PF01842 ACT domain JJB98_08875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_08885 PF00005 ABC transporter JJB98_08885 PF12848 ABC transporter JJB98_08910 PF00210 Ferritin-like domain JJB98_08920 PF00561 alpha/beta hydrolase fold JJB98_08945 PF02954 Bacterial regulatory protein, Fis family JJB98_08945 PF00158 Sigma-54 interaction domain JJB98_08975 PF02798 Glutathione S-transferase, N-terminal domain JJB98_08980 PF03167 Uracil DNA glycosylase superfamily JJB98_08985 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JJB98_09000 PF01964 Radical SAM ThiC family JJB98_09000 PF13667 ThiC-associated domain JJB98_09005 PF02581 Thiamine monophosphate synthase JJB98_09010 PF05690 Thiazole biosynthesis protein ThiG JJB98_09020 PF01266 FAD dependent oxidoreductase JJB98_09035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_09035 PF00512 His Kinase A (phospho-acceptor) domain JJB98_09035 PF00672 HAMP domain JJB98_09040 PF00072 Response regulator receiver domain JJB98_09040 PF00486 Transcriptional regulatory protein, C terminal JJB98_09055 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_09060 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_09070 PF00005 ABC transporter JJB98_09070 PF08402 TOBE domain JJB98_09105 PF17969 L,D-transpeptidase C-terminal domain JJB98_09105 PF01476 LysM domain JJB98_09105 PF03734 L,D-transpeptidase catalytic domain JJB98_09110 PF13439 Glycosyltransferase Family 4 JJB98_09110 PF00534 Glycosyl transferases group 1 JJB98_09115 PF08241 Methyltransferase domain JJB98_09125 PF00501 AMP-binding enzyme JJB98_09125 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_09125 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_09125 PF00550 Phosphopantetheine attachment site JJB98_09125 PF13193 AMP-binding enzyme C-terminal domain JJB98_09125 PF00668 Condensation domain JJB98_09125 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_09125 PF00202 Aminotransferase class-III JJB98_09130 PF02666 Phosphatidylserine decarboxylase JJB98_09135 PF00300 Histidine phosphatase superfamily (branch 1) JJB98_09135 PF00293 NUDIX domain JJB98_09165 PF08361 MAATS-type transcriptional repressor, C-terminal region JJB98_09165 PF00440 Bacterial regulatory proteins, tetR family JJB98_09170 PF13533 Biotin-lipoyl like JJB98_09175 PF07690 Major Facilitator Superfamily JJB98_09180 PF00664 ABC transporter transmembrane region JJB98_09180 PF00005 ABC transporter JJB98_09195 PF00392 Bacterial regulatory proteins, gntR family JJB98_09195 PF00155 Aminotransferase class I and II JJB98_09205 PF00561 alpha/beta hydrolase fold JJB98_09215 PF03795 YCII-related domain JJB98_09220 PF08281 Sigma-70, region 4 JJB98_09220 PF04542 Sigma-70 region 2 JJB98_09225 PF01510 N-acetylmuramoyl-L-alanine amidase JJB98_09230 PF01795 MraW methylase family JJB98_09240 PF00905 Penicillin binding protein transpeptidase domain JJB98_09240 PF03717 Penicillin-binding Protein dimerisation domain JJB98_09245 PF02875 Mur ligase family, glutamate ligase domain JJB98_09245 PF08245 Mur ligase middle domain JJB98_09245 PF01225 Mur ligase family, catalytic domain JJB98_09250 PF02875 Mur ligase family, glutamate ligase domain JJB98_09250 PF08245 Mur ligase middle domain JJB98_09250 PF01225 Mur ligase family, catalytic domain JJB98_09255 PF00953 Glycosyl transferase family 4 JJB98_09255 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JJB98_09260 PF02875 Mur ligase family, glutamate ligase domain JJB98_09260 PF08245 Mur ligase middle domain JJB98_09260 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JJB98_09270 PF01098 Cell cycle protein JJB98_09275 PF03033 Glycosyltransferase family 28 N-terminal domain JJB98_09275 PF04101 Glycosyltransferase family 28 C-terminal domain JJB98_09280 PF01225 Mur ligase family, catalytic domain JJB98_09280 PF08245 Mur ligase middle domain JJB98_09280 PF02875 Mur ligase family, glutamate ligase domain JJB98_09285 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JJB98_09285 PF01565 FAD binding domain JJB98_09290 PF01820 D-ala D-ala ligase N-terminus JJB98_09290 PF07478 D-ala D-ala ligase C-terminus JJB98_09295 PF03799 Cell division protein FtsQ JJB98_09295 PF08478 POTRA domain, FtsQ-type JJB98_09300 PF02491 SHS2 domain inserted in FTSA JJB98_09305 PF00091 Tubulin/FtsZ family, GTPase domain JJB98_09305 PF12327 FtsZ family, C-terminal domain JJB98_09310 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JJB98_09315 PF13525 Outer membrane lipoprotein JJB98_09320 PF02463 RecF/RecN/SMC N terminal domain JJB98_09325 PF00533 BRCA1 C Terminus (BRCT) domain JJB98_09325 PF12826 Helix-hairpin-helix motif JJB98_09325 PF03120 NAD-dependent DNA ligase OB-fold domain JJB98_09325 PF01653 NAD-dependent DNA ligase adenylation domain JJB98_09335 PF01321 Creatinase/Prolidase N-terminal domain JJB98_09335 PF00557 Metallopeptidase family M24 JJB98_09385 PF03009 Glycerophosphoryl diester phosphodiesterase family JJB98_09395 PF01061 ABC-2 type transporter JJB98_09400 PF00005 ABC transporter JJB98_09415 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_09420 PF03447 Homoserine dehydrogenase, NAD binding domain JJB98_09420 PF01958 Domain of unknown function DUF108 JJB98_09425 PF07995 Glucose / Sorbosone dehydrogenase JJB98_09440 PF16363 GDP-mannose 4,6 dehydratase JJB98_09450 PF00691 OmpA family JJB98_09450 PF05736 OprF membrane domain JJB98_09465 PF00580 UvrD/REP helicase N-terminal domain JJB98_09465 PF13361 UvrD-like helicase C-terminal domain JJB98_09470 PF07043 Protein of unknown function (DUF1328) JJB98_09480 PF01565 FAD binding domain JJB98_09480 PF02913 FAD linked oxidases, C-terminal domain JJB98_09495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_09495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_09495 PF01842 ACT domain JJB98_09505 PF03707 Bacterial signalling protein N terminal repeat JJB98_09505 PF13188 PAS domain JJB98_09505 PF00563 EAL domain JJB98_09505 PF00990 Diguanylate cyclase, GGDEF domain JJB98_09510 PF07690 Major Facilitator Superfamily JJB98_09515 PF00563 EAL domain JJB98_09515 PF13426 PAS domain JJB98_09515 PF00990 Diguanylate cyclase, GGDEF domain JJB98_09540 PF00313 'Cold-shock' DNA-binding domain JJB98_09545 PF01165 Ribosomal protein S21 JJB98_09565 PF00440 Bacterial regulatory proteins, tetR family JJB98_09570 PF00067 Cytochrome P450 JJB98_09595 PF08448 PAS fold JJB98_09595 PF00990 Diguanylate cyclase, GGDEF domain JJB98_09595 PF00563 EAL domain JJB98_09595 PF08447 PAS fold JJB98_09600 PF07670 Nucleoside recognition JJB98_09600 PF07664 Ferrous iron transport protein B C terminus JJB98_09600 PF02421 Ferrous iron transport protein B JJB98_09620 PF00206 Lyase JJB98_09620 PF10415 Fumarase C C-terminus JJB98_09645 PF01970 Tripartite tricarboxylate transporter TctA family JJB98_09650 PF00303 Thymidylate synthase JJB98_09660 PF00186 Dihydrofolate reductase JJB98_09665 PF01145 SPFH domain / Band 7 family JJB98_09670 PF01145 SPFH domain / Band 7 family JJB98_09680 PF13180 PDZ domain JJB98_09695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_09695 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_09695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_09700 PF10369 Small subunit of acetolactate synthase JJB98_09705 PF05175 Methyltransferase small domain JJB98_09710 PF00892 EamA-like transporter family JJB98_09715 PF01810 LysE type translocator JJB98_09720 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JJB98_09720 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JJB98_09725 PF00106 short chain dehydrogenase JJB98_09745 PF00005 ABC transporter JJB98_09755 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_09760 PF00005 ABC transporter JJB98_09760 PF00571 CBS domain JJB98_09765 PF00005 ABC transporter JJB98_09770 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_09790 PF00005 ABC transporter JJB98_09790 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_09795 PF00005 ABC transporter JJB98_09810 PF03976 Polyphosphate kinase 2 (PPK2) JJB98_09820 PF00390 Malic enzyme, N-terminal domain JJB98_09820 PF03949 Malic enzyme, NAD binding domain JJB98_09825 PF03330 Lytic transglycolase JJB98_09855 PF00135 Carboxylesterase family JJB98_09870 PF04193 PQ loop repeat JJB98_09875 PF08323 Starch synthase catalytic domain JJB98_09875 PF00534 Glycosyl transferases group 1 JJB98_09880 PF00483 Nucleotidyl transferase JJB98_09890 PF03330 Lytic transglycolase JJB98_09895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_09895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJB98_09900 PF13458 Periplasmic binding protein JJB98_09910 PF00005 ABC transporter JJB98_09920 PF02653 Branched-chain amino acid transport system / permease component JJB98_09935 PF00682 HMGL-like JJB98_09935 PF08502 LeuA allosteric (dimerisation) domain JJB98_09940 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_09970 PF02899 Phage integrase, N-terminal SAM-like domain JJB98_09970 PF00589 Phage integrase family JJB98_09990 PF00665 Integrase core domain JJB98_09990 PF13276 HTH-like domain JJB98_09990 PF13333 Integrase core domain JJB98_10110 PF13356 Arm DNA-binding domain JJB98_10110 PF00589 Phage integrase family JJB98_10120 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_10135 PF12849 PBP superfamily domain JJB98_10145 PF03454 MoeA C-terminal region (domain IV) JJB98_10145 PF00994 Probable molybdopterin binding domain JJB98_10145 PF03453 MoeA N-terminal region (domain I and II) JJB98_10150 PF01494 FAD binding domain JJB98_10155 PF12804 MobA-like NTP transferase domain JJB98_10160 PF02634 FdhD/NarQ family JJB98_10165 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JJB98_10170 PF03454 MoeA C-terminal region (domain IV) JJB98_10170 PF00994 Probable molybdopterin binding domain JJB98_10170 PF03453 MoeA N-terminal region (domain I and II) JJB98_10175 PF01206 Sulfurtransferase TusA JJB98_10185 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJB98_10185 PF10531 SLBB domain JJB98_10185 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJB98_10190 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JJB98_10190 PF12838 4Fe-4S dicluster domain JJB98_10190 PF00384 Molybdopterin oxidoreductase JJB98_10190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJB98_10190 PF01568 Molydopterin dinucleotide binding domain JJB98_10195 PF04073 Aminoacyl-tRNA editing domain JJB98_10200 PF00753 Metallo-beta-lactamase superfamily JJB98_10205 PF00005 ABC transporter JJB98_10230 PF07729 FCD domain JJB98_10230 PF00392 Bacterial regulatory proteins, gntR family JJB98_10235 PF03358 NADPH-dependent FMN reductase JJB98_10235 PF00890 FAD binding domain JJB98_10235 PF04205 FMN-binding domain JJB98_10245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JJB98_10245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JJB98_10265 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_10265 PF00672 HAMP domain JJB98_10265 PF02743 Cache domain JJB98_10285 PF00486 Transcriptional regulatory protein, C terminal JJB98_10285 PF00072 Response regulator receiver domain JJB98_10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_10290 PF02895 Signal transducing histidine kinase, homodimeric domain JJB98_10290 PF01627 Hpt domain JJB98_10290 PF01584 CheW-like domain JJB98_10295 PF01584 CheW-like domain JJB98_10300 PF00672 HAMP domain JJB98_10300 PF16591 Helical bimodular sensor domain JJB98_10300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_10305 PF01584 CheW-like domain JJB98_10310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_10310 PF02203 Tar ligand binding domain homologue JJB98_10310 PF00672 HAMP domain JJB98_10315 PF03705 CheR methyltransferase, all-alpha domain JJB98_10315 PF01739 CheR methyltransferase, SAM binding domain JJB98_10320 PF00072 Response regulator receiver domain JJB98_10320 PF01339 CheB methylesterase JJB98_10350 PF00563 EAL domain JJB98_10350 PF00196 Bacterial regulatory proteins, luxR family JJB98_10395 PF00005 ABC transporter JJB98_10395 PF03412 Peptidase C39 family JJB98_10395 PF00664 ABC transporter transmembrane region JJB98_10400 PF02321 Outer membrane efflux protein JJB98_10425 PF13629 Pilus formation protein N terminal region JJB98_10425 PF00263 Bacterial type II and III secretion system protein JJB98_10425 PF04972 BON domain JJB98_10455 PF00437 Type II/IV secretion system protein JJB98_10460 PF01883 Iron-sulfur cluster assembly protein JJB98_10460 PF10609 NUBPL iron-transfer P-loop NTPase JJB98_10510 PF00529 HlyD membrane-fusion protein of T1SS JJB98_10515 PF00005 ABC transporter JJB98_10515 PF00664 ABC transporter transmembrane region JJB98_10525 PF13185 GAF domain JJB98_10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_10525 PF07730 Histidine kinase JJB98_10530 PF00072 Response regulator receiver domain JJB98_10530 PF00196 Bacterial regulatory proteins, luxR family JJB98_10545 PF13181 Tetratricopeptide repeat JJB98_10545 PF17128 Domain of unknown function (DUF5107) JJB98_10555 PF00149 Calcineurin-like phosphoesterase JJB98_10560 PF02397 Bacterial sugar transferase JJB98_10610 PF01370 NAD dependent epimerase/dehydratase family JJB98_10620 PF00535 Glycosyl transferase family 2 JJB98_10635 PF00722 Glycosyl hydrolases family 16 JJB98_10640 PF01943 Polysaccharide biosynthesis protein JJB98_10660 PF00535 Glycosyl transferase family 2 JJB98_10665 PF13439 Glycosyltransferase Family 4 JJB98_10670 PF00535 Glycosyl transferase family 2 JJB98_10675 PF16363 GDP-mannose 4,6 dehydratase JJB98_10685 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 JJB98_10685 PF00535 Glycosyl transferase family 2 JJB98_10690 PF00535 Glycosyl transferase family 2 JJB98_10695 PF00664 ABC transporter transmembrane region JJB98_10695 PF00005 ABC transporter JJB98_10700 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) JJB98_10700 PF00722 Glycosyl hydrolases family 16 JJB98_10750 PF12706 Beta-lactamase superfamily domain JJB98_10765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJB98_10765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJB98_10765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJB98_10765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJB98_10770 PF00355 Rieske [2Fe-2S] domain JJB98_10780 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_10780 PF00175 Oxidoreductase NAD-binding domain JJB98_10785 PF03707 Bacterial signalling protein N terminal repeat JJB98_10785 PF00990 Diguanylate cyclase, GGDEF domain JJB98_10785 PF13188 PAS domain JJB98_10785 PF00563 EAL domain JJB98_10805 PF08361 MAATS-type transcriptional repressor, C-terminal region JJB98_10805 PF00440 Bacterial regulatory proteins, tetR family JJB98_10810 PF00732 GMC oxidoreductase JJB98_10810 PF05199 GMC oxidoreductase JJB98_10815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JJB98_10815 PF03900 Porphobilinogen deaminase, C-terminal domain JJB98_10820 PF01208 Uroporphyrinogen decarboxylase (URO-D) JJB98_10830 PF00563 EAL domain JJB98_10830 PF01590 GAF domain JJB98_10830 PF00360 Phytochrome region JJB98_10830 PF00990 Diguanylate cyclase, GGDEF domain JJB98_10835 PF04102 SlyX JJB98_10840 PF00581 Rhodanese-like domain JJB98_10840 PF17773 UPF0176 acylphosphatase like domain JJB98_10850 PF10518 TAT (twin-arginine translocation) pathway signal sequence JJB98_10850 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_10850 PF01799 [2Fe-2S] binding domain JJB98_10855 PF00941 FAD binding domain in molybdopterin dehydrogenase JJB98_10855 PF03450 CO dehydrogenase flavoprotein C-terminal domain JJB98_10860 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_10860 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_10865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJB98_10870 PF05532 CsbD-like JJB98_10905 PF00691 OmpA family JJB98_10905 PF05736 OprF membrane domain JJB98_10915 PF06224 Winged helix DNA-binding domain JJB98_10925 PF07690 Major Facilitator Superfamily JJB98_10935 PF00873 AcrB/AcrD/AcrF family JJB98_10940 PF00440 Bacterial regulatory proteins, tetR family JJB98_10950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_10950 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_10950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_10950 PF09317 Domain of unknown function (DUF1974) JJB98_10955 PF00108 Thiolase, N-terminal domain JJB98_10955 PF02803 Thiolase, C-terminal domain JJB98_10960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_10960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_10960 PF00378 Enoyl-CoA hydratase/isomerase JJB98_10965 PF03061 Thioesterase superfamily JJB98_10980 PF13419 Haloacid dehalogenase-like hydrolase JJB98_10985 PF00455 DeoR C terminal sensor domain JJB98_10985 PF08220 DeoR-like helix-turn-helix domain JJB98_11000 PF01266 FAD dependent oxidoreductase JJB98_11000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JJB98_11005 PF00005 ABC transporter JJB98_11005 PF08402 TOBE domain JJB98_11010 PF08402 TOBE domain JJB98_11010 PF00005 ABC transporter JJB98_11015 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_11020 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_11035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJB98_11050 PF01435 Peptidase family M48 JJB98_11075 PF09856 Predicted transcriptional regulator (DUF2083) JJB98_11075 PF01381 Helix-turn-helix JJB98_11075 PF06114 IrrE N-terminal-like domain JJB98_11080 PF00463 Isocitrate lyase family JJB98_11100 PF00293 NUDIX domain JJB98_11125 PF07715 TonB-dependent Receptor Plug Domain JJB98_11125 PF00593 TonB dependent receptor JJB98_11150 PF17863 AAA lid domain JJB98_11150 PF07726 ATPase family associated with various cellular activities (AAA) JJB98_11160 PF00293 NUDIX domain JJB98_11170 PF01743 Poly A polymerase head domain JJB98_11170 PF12627 Probable RNA and SrmB- binding site of polymerase A JJB98_11170 PF13735 tRNA nucleotidyltransferase domain 2 putative JJB98_11180 PF00679 Elongation factor G C-terminus JJB98_11180 PF14492 Elongation Factor G, domain II JJB98_11180 PF03764 Elongation factor G, domain IV JJB98_11180 PF00009 Elongation factor Tu GTP binding domain JJB98_11180 PF03144 Elongation factor Tu domain 2 JJB98_11185 PF13426 PAS domain JJB98_11185 PF00072 Response regulator receiver domain JJB98_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_11210 PF01218 Coproporphyrinogen III oxidase JJB98_11220 PF00588 SpoU rRNA Methylase family JJB98_11225 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JJB98_11225 PF00355 Rieske [2Fe-2S] domain JJB98_11230 PF00032 Cytochrome b(C-terminal)/b6/petD JJB98_11230 PF00033 Cytochrome b/b6/petB JJB98_11230 PF02167 Cytochrome C1 family JJB98_11235 PF01738 Dienelactone hydrolase family JJB98_11240 PF00117 Glutamine amidotransferase class-I JJB98_11240 PF00425 chorismate binding enzyme JJB98_11240 PF04715 Anthranilate synthase component I, N terminal region JJB98_11245 PF00156 Phosphoribosyl transferase domain JJB98_11265 PF01435 Peptidase family M48 JJB98_11270 PF04011 LemA family JJB98_11280 PF02463 RecF/RecN/SMC N terminal domain JJB98_11285 PF13462 Thioredoxin JJB98_11295 PF00730 HhH-GPD superfamily base excision DNA repair protein JJB98_11295 PF14815 NUDIX domain JJB98_11305 PF01494 FAD binding domain JJB98_11310 PF14497 Glutathione S-transferase, C-terminal domain JJB98_11310 PF02798 Glutathione S-transferase, N-terminal domain JJB98_11315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_11315 PF03466 LysR substrate binding domain JJB98_11325 PF02798 Glutathione S-transferase, N-terminal domain JJB98_11335 PF01555 DNA methylase JJB98_11335 PF18755 Restriction Enzyme Adenine Methylase Associated JJB98_11340 PF04228 Putative neutral zinc metallopeptidase JJB98_11345 PF00994 Probable molybdopterin binding domain JJB98_11350 PF01047 MarR family JJB98_11350 PF00583 Acetyltransferase (GNAT) family JJB98_11365 PF00871 Acetokinase family JJB98_11370 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase JJB98_11370 PF09364 XFP N-terminal domain JJB98_11370 PF09363 XFP C-terminal domain JJB98_11385 PF01351 Ribonuclease HII JJB98_11395 PF03167 Uracil DNA glycosylase superfamily JJB98_11410 PF00288 GHMP kinases N terminal domain JJB98_11410 PF08544 GHMP kinases C terminal JJB98_11415 PF00561 alpha/beta hydrolase fold JJB98_11420 PF01810 LysE type translocator JJB98_11425 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_11425 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_11430 PF01638 HxlR-like helix-turn-helix JJB98_11435 PF00348 Polyprenyl synthetase JJB98_11445 PF13847 Methyltransferase domain JJB98_11445 PF17827 PrmC N-terminal domain JJB98_11450 PF06965 Na+/H+ antiporter 1 JJB98_11450 PF01343 Peptidase family S49 JJB98_11460 PF02091 Glycyl-tRNA synthetase alpha subunit JJB98_11465 PF02092 Glycyl-tRNA synthetase beta subunit JJB98_11465 PF05746 DALR anticodon binding domain JJB98_11480 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JJB98_11480 PF02896 PEP-utilising enzyme, TIM barrel domain JJB98_11480 PF00391 PEP-utilising enzyme, mobile domain JJB98_11485 PF07486 Cell Wall Hydrolase JJB98_11485 PF01471 Putative peptidoglycan binding domain JJB98_11490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JJB98_11490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JJB98_11495 PF02910 Fumarate reductase flavoprotein C-term JJB98_11495 PF00890 FAD binding domain JJB98_11500 PF02445 Quinolinate synthetase A protein JJB98_11505 PF07690 Major Facilitator Superfamily JJB98_11510 PF00107 Zinc-binding dehydrogenase JJB98_11510 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_11525 PF08269 Cache domain JJB98_11530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_11530 PF08269 Cache domain JJB98_11550 PF01966 HD domain JJB98_11555 PF00958 GMP synthase C terminal domain JJB98_11555 PF13673 Acetyltransferase (GNAT) domain JJB98_11555 PF13302 Acetyltransferase (GNAT) domain JJB98_11555 PF00117 Glutamine amidotransferase class-I JJB98_11555 PF03352 Methyladenine glycosylase JJB98_11560 PF01571 Aminomethyltransferase folate-binding domain JJB98_11565 PF01979 Amidohydrolase family JJB98_11570 PF00581 Rhodanese-like domain JJB98_11575 PF04542 Sigma-70 region 2 JJB98_11575 PF08281 Sigma-70, region 4 JJB98_11600 PF00293 NUDIX domain JJB98_11610 PF02586 SOS response associated peptidase (SRAP) JJB98_11615 PF02515 CoA-transferase family III JJB98_11625 PF00293 NUDIX domain JJB98_11635 PF02913 FAD linked oxidases, C-terminal domain JJB98_11635 PF01565 FAD binding domain JJB98_11640 PF03481 Putative GTP-binding controlling metal-binding JJB98_11640 PF01300 Telomere recombination JJB98_11665 PF03070 TENA/THI-4/PQQC family JJB98_11710 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JJB98_11710 PF00271 Helicase conserved C-terminal domain JJB98_11710 PF08463 EcoEI R protein C-terminal JJB98_11710 PF04851 Type III restriction enzyme, res subunit JJB98_11715 PF02384 N-6 DNA Methylase JJB98_11715 PF12161 HsdM N-terminal domain JJB98_11800 PF02735 Ku70/Ku80 beta-barrel domain JJB98_11815 PF13298 DNA polymerase Ligase (LigD) JJB98_11815 PF01068 ATP dependent DNA ligase domain JJB98_11815 PF04679 ATP dependent DNA ligase C terminal region JJB98_11830 PF13362 Toprim domain JJB98_11830 PF18818 Metallopeptidase superfamily domain JJB98_11830 PF08401 Domain of unknown function (DUF1738) JJB98_11860 PF05284 Protein of unknown function (DUF736) JJB98_11865 PF01381 Helix-turn-helix JJB98_11900 PF10502 Signal peptidase, peptidase S26 JJB98_11905 PF01551 Peptidase family M23 JJB98_11905 PF10145 Phage-related minor tail protein JJB98_11905 PF01464 Transglycosylase SLT domain JJB98_11915 PF02534 Type IV secretory system Conjugative DNA transfer JJB98_11935 PF00378 Enoyl-CoA hydratase/isomerase JJB98_11945 PF00378 Enoyl-CoA hydratase/isomerase JJB98_11950 PF00289 Biotin carboxylase, N-terminal domain JJB98_11950 PF00364 Biotin-requiring enzyme JJB98_11950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_11950 PF02785 Biotin carboxylase C-terminal domain JJB98_11955 PF01039 Carboxyl transferase domain JJB98_11970 PF00501 AMP-binding enzyme JJB98_11970 PF13193 AMP-binding enzyme C-terminal domain JJB98_11975 PF00378 Enoyl-CoA hydratase/isomerase JJB98_11980 PF13193 AMP-binding enzyme C-terminal domain JJB98_11980 PF00501 AMP-binding enzyme JJB98_11980 PF16177 Acetyl-coenzyme A synthetase N-terminus JJB98_11985 PF00378 Enoyl-CoA hydratase/isomerase JJB98_11990 PF00440 Bacterial regulatory proteins, tetR family JJB98_12000 PF00437 Type II/IV secretion system protein JJB98_12005 PF04956 TrbC/VIRB2 family JJB98_12015 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JJB98_12030 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JJB98_12045 PF03743 Bacterial conjugation TrbI-like protein JJB98_12060 PF00765 Autoinducer synthase JJB98_12065 PF03472 Autoinducer binding domain JJB98_12065 PF00196 Bacterial regulatory proteins, luxR family JJB98_12075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_12080 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_12085 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_12085 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_12090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_12090 PF00005 ABC transporter JJB98_12095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_12095 PF00005 ABC transporter JJB98_12100 PF13193 AMP-binding enzyme C-terminal domain JJB98_12100 PF00501 AMP-binding enzyme JJB98_12110 PF00106 short chain dehydrogenase JJB98_12115 PF02803 Thiolase, C-terminal domain JJB98_12115 PF00108 Thiolase, N-terminal domain JJB98_12120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_12120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_12120 PF00378 Enoyl-CoA hydratase/isomerase JJB98_12130 PF12706 Beta-lactamase superfamily domain JJB98_12135 PF00884 Sulfatase JJB98_12135 PF12411 Choline sulfatase enzyme C terminal JJB98_12140 PF08946 Osmosensory transporter coiled coil JJB98_12140 PF00083 Sugar (and other) transporter JJB98_12145 PF03466 LysR substrate binding domain JJB98_12145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_12225 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JJB98_12315 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_12320 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_12325 PF16864 Dimerisation domain JJB98_12325 PF00891 O-methyltransferase domain JJB98_12335 PF07690 Major Facilitator Superfamily JJB98_12350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_12350 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JJB98_12355 PF00135 Carboxylesterase family JJB98_12365 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_12380 PF01042 Endoribonuclease L-PSP JJB98_12385 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JJB98_12390 PF00027 Cyclic nucleotide-binding domain JJB98_12390 PF13545 Crp-like helix-turn-helix domain JJB98_12395 PF01613 Flavin reductase like domain JJB98_12410 PF00005 ABC transporter JJB98_12410 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_12415 PF00005 ABC transporter JJB98_12430 PF01425 Amidase JJB98_12435 PF12697 Alpha/beta hydrolase family JJB98_12450 PF00892 EamA-like transporter family JJB98_12475 PF01638 HxlR-like helix-turn-helix JJB98_12520 PF03466 LysR substrate binding domain JJB98_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_12525 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JJB98_12530 PF00485 Phosphoribulokinase / Uridine kinase family JJB98_12535 PF02779 Transketolase, pyrimidine binding domain JJB98_12535 PF02780 Transketolase, C-terminal domain JJB98_12535 PF00456 Transketolase, thiamine diphosphate binding domain JJB98_12540 PF01116 Fructose-bisphosphate aldolase class-II JJB98_12545 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain JJB98_12545 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain JJB98_12550 PF00101 Ribulose bisphosphate carboxylase, small chain JJB98_12555 PF17866 AAA lid domain JJB98_12555 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_12575 PF13180 PDZ domain JJB98_12620 PF13426 PAS domain JJB98_12620 PF07536 HWE histidine kinase JJB98_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_12625 PF00072 Response regulator receiver domain JJB98_12625 PF01627 Hpt domain JJB98_12625 PF00512 His Kinase A (phospho-acceptor) domain JJB98_12625 PF00672 HAMP domain JJB98_12625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJB98_12670 PF01569 PAP2 superfamily JJB98_12705 PF13533 Biotin-lipoyl like JJB98_12710 PF07690 Major Facilitator Superfamily JJB98_12720 PF03060 Nitronate monooxygenase JJB98_12735 PF00248 Aldo/keto reductase family JJB98_12755 PF00155 Aminotransferase class I and II JJB98_12765 PF02254 TrkA-N domain JJB98_12765 PF00999 Sodium/hydrogen exchanger family JJB98_12770 PF00925 GTP cyclohydrolase II JJB98_12770 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JJB98_12775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_12775 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_12775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_12795 PF13193 AMP-binding enzyme C-terminal domain JJB98_12795 PF00501 AMP-binding enzyme JJB98_12805 PF03734 L,D-transpeptidase catalytic domain JJB98_12810 PF01544 CorA-like Mg2+ transporter protein JJB98_12825 PF01243 Pyridoxamine 5'-phosphate oxidase JJB98_12825 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JJB98_12835 PF01556 DnaJ C terminal domain JJB98_12835 PF00226 DnaJ domain JJB98_12845 PF04542 Sigma-70 region 2 JJB98_12845 PF08281 Sigma-70, region 4 JJB98_12860 PF01264 Chorismate synthase JJB98_12865 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_12865 PF00072 Response regulator receiver domain JJB98_12870 PF13508 Acetyltransferase (GNAT) domain JJB98_12870 PF00583 Acetyltransferase (GNAT) family JJB98_12875 PF02617 ATP-dependent Clp protease adaptor protein ClpS JJB98_12880 PF02641 Uncharacterized ACR, COG1993 JJB98_12885 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JJB98_12890 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JJB98_12930 PF00682 HMGL-like JJB98_12935 PF02515 CoA-transferase family III JJB98_12945 PF00005 ABC transporter JJB98_12950 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_12955 PF05175 Methyltransferase small domain JJB98_12960 PF01479 S4 domain JJB98_12960 PF01728 FtsJ-like methyltransferase JJB98_12970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JJB98_12970 PF02779 Transketolase, pyrimidine binding domain JJB98_12970 PF02780 Transketolase, C-terminal domain JJB98_12975 PF02609 Exonuclease VII small subunit JJB98_12980 PF00850 Histone deacetylase domain JJB98_12985 PF00565 Staphylococcal nuclease homologue JJB98_12985 PF02872 5'-nucleotidase, C-terminal domain JJB98_12985 PF00746 LPXTG cell wall anchor motif JJB98_12985 PF00149 Calcineurin-like phosphoesterase JJB98_12995 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_12995 PF12806 Acetyl-CoA dehydrogenase C-terminal like JJB98_12995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_12995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_13010 PF16868 NMT1-like family JJB98_13015 PF00202 Aminotransferase class-III JJB98_13035 PF01799 [2Fe-2S] binding domain JJB98_13035 PF10518 TAT (twin-arginine translocation) pathway signal sequence JJB98_13035 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_13040 PF03450 CO dehydrogenase flavoprotein C-terminal domain JJB98_13040 PF00941 FAD binding domain in molybdopterin dehydrogenase JJB98_13045 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_13045 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_13050 PF00723 Glycosyl hydrolases family 15 JJB98_13070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_13070 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_13070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_13075 PF02913 FAD linked oxidases, C-terminal domain JJB98_13075 PF01565 FAD binding domain JJB98_13075 PF13183 4Fe-4S dicluster domain JJB98_13085 PF00011 Hsp20/alpha crystallin family JJB98_13105 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_13105 PF17862 AAA+ lid domain JJB98_13105 PF06480 FtsH Extracellular JJB98_13105 PF01434 Peptidase family M41 JJB98_13115 PF02515 CoA-transferase family III JJB98_13135 PF01546 Peptidase family M20/M25/M40 JJB98_13135 PF07687 Peptidase dimerisation domain JJB98_13140 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JJB98_13140 PF13378 Enolase C-terminal domain-like JJB98_13145 PF07687 Peptidase dimerisation domain JJB98_13145 PF01546 Peptidase family M20/M25/M40 JJB98_13155 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JJB98_13160 PF00654 Voltage gated chloride channel JJB98_13180 PF01928 CYTH domain JJB98_13210 PF00005 ABC transporter JJB98_13230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_13230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_13230 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_13255 PF01464 Transglycosylase SLT domain JJB98_13260 PF01476 LysM domain JJB98_13260 PF03734 L,D-transpeptidase catalytic domain JJB98_13275 PF07995 Glucose / Sorbosone dehydrogenase JJB98_13295 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJB98_13295 PF06481 COX Aromatic Rich Motif JJB98_13300 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_13305 PF00510 Cytochrome c oxidase subunit III JJB98_13310 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JJB98_13320 PF00732 GMC oxidoreductase JJB98_13320 PF05199 GMC oxidoreductase JJB98_13330 PF13180 PDZ domain JJB98_13335 PF00890 FAD binding domain JJB98_13350 PF00857 Isochorismatase family JJB98_13360 PF13282 Domain of unknown function (DUF4070) JJB98_13360 PF02310 B12 binding domain JJB98_13360 PF04055 Radical SAM superfamily JJB98_13365 PF07690 Major Facilitator Superfamily JJB98_13370 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_13375 PF13632 Glycosyl transferase family group 2 JJB98_13380 PF04349 Periplasmic glucan biosynthesis protein, MdoG JJB98_13395 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_13405 PF13649 Methyltransferase domain JJB98_13410 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_13415 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_13420 PF14864 Alkyl sulfatase C-terminal JJB98_13420 PF00753 Metallo-beta-lactamase superfamily JJB98_13420 PF14863 Alkyl sulfatase dimerisation JJB98_13425 PF13439 Glycosyltransferase Family 4 JJB98_13425 PF00534 Glycosyl transferases group 1 JJB98_13430 PF00005 ABC transporter JJB98_13430 PF00664 ABC transporter transmembrane region JJB98_13445 PF07690 Major Facilitator Superfamily JJB98_13455 PF00534 Glycosyl transferases group 1 JJB98_13455 PF08323 Starch synthase catalytic domain JJB98_13460 PF02515 CoA-transferase family III JJB98_13465 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_13465 PF00107 Zinc-binding dehydrogenase JJB98_13470 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_13480 PF00378 Enoyl-CoA hydratase/isomerase JJB98_13485 PF01381 Helix-turn-helix JJB98_13500 PF02683 Cytochrome C biogenesis protein transmembrane region JJB98_13505 PF13426 PAS domain JJB98_13505 PF08447 PAS fold JJB98_13505 PF07536 HWE histidine kinase JJB98_13510 PF00144 Beta-lactamase JJB98_13515 PF00775 Dioxygenase JJB98_13515 PF04444 Catechol dioxygenase N terminus JJB98_13520 PF03793 PASTA domain JJB98_13520 PF00069 Protein kinase domain JJB98_13530 PF00005 ABC transporter JJB98_13535 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_13540 PF00005 ABC transporter JJB98_13545 PF07690 Major Facilitator Superfamily JJB98_13550 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJB98_13550 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_13550 PF04324 BFD-like [2Fe-2S] binding domain JJB98_13550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJB98_13550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJB98_13555 PF04324 BFD-like [2Fe-2S] binding domain JJB98_13555 PF00384 Molybdopterin oxidoreductase JJB98_13555 PF01568 Molydopterin dinucleotide binding domain JJB98_13555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJB98_13565 PF00248 Aldo/keto reductase family JJB98_13570 PF00892 EamA-like transporter family JJB98_13575 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_13575 PF00107 Zinc-binding dehydrogenase JJB98_13580 PF01037 Lrp/AsnC ligand binding domain JJB98_13585 PF00456 Transketolase, thiamine diphosphate binding domain JJB98_13585 PF17831 Pyruvate dehydrogenase E1 component middle domain JJB98_13590 PF00171 Aldehyde dehydrogenase family JJB98_13595 PF00753 Metallo-beta-lactamase superfamily JJB98_13605 PF01370 NAD dependent epimerase/dehydratase family JJB98_13625 PF00920 Dehydratase family JJB98_13630 PF00378 Enoyl-CoA hydratase/isomerase JJB98_13635 PF14759 Reductase C-terminal JJB98_13635 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_13640 PF00294 pfkB family carbohydrate kinase JJB98_13645 PF00294 pfkB family carbohydrate kinase JJB98_13655 PF00440 Bacterial regulatory proteins, tetR family JJB98_13655 PF17938 Tetracyclin repressor-like, C-terminal domain JJB98_13660 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_13670 PF00005 ABC transporter JJB98_13680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_13680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJB98_13700 PF00202 Aminotransferase class-III JJB98_13705 PF00067 Cytochrome P450 JJB98_13715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_13715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_13720 PF00440 Bacterial regulatory proteins, tetR family JJB98_13725 PF13533 Biotin-lipoyl like JJB98_13730 PF00873 AcrB/AcrD/AcrF family JJB98_13735 PF00072 Response regulator receiver domain JJB98_13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_13735 PF13426 PAS domain JJB98_13740 PF02954 Bacterial regulatory protein, Fis family JJB98_13740 PF00158 Sigma-54 interaction domain JJB98_13740 PF00072 Response regulator receiver domain JJB98_13745 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_13770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_13770 PF00005 ABC transporter JJB98_13775 PF00005 ABC transporter JJB98_13775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_13780 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_13780 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_13785 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_13790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_13805 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JJB98_13805 PF06974 Protein of unknown function (DUF1298) JJB98_13810 PF00561 alpha/beta hydrolase fold JJB98_13815 PF00067 Cytochrome P450 JJB98_13815 PF00258 Flavodoxin JJB98_13815 PF00667 FAD binding domain JJB98_13815 PF00175 Oxidoreductase NAD-binding domain JJB98_13825 PF00561 alpha/beta hydrolase fold JJB98_13835 PF00561 alpha/beta hydrolase fold JJB98_13850 PF04286 Protein of unknown function (DUF445) JJB98_13855 PF00561 alpha/beta hydrolase fold JJB98_13865 PF08223 PaaX-like protein C-terminal domain JJB98_13865 PF07848 PaaX-like protein JJB98_13870 PF05138 Phenylacetic acid catabolic protein JJB98_13875 PF06243 Phenylacetic acid degradation B JJB98_13880 PF05138 Phenylacetic acid catabolic protein JJB98_13885 PF01883 Iron-sulfur cluster assembly protein JJB98_13890 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_13890 PF00175 Oxidoreductase NAD-binding domain JJB98_13890 PF00970 Oxidoreductase FAD-binding domain JJB98_13895 PF03061 Thioesterase superfamily JJB98_13900 PF14535 AMP-binding enzyme C-terminal domain JJB98_13900 PF00501 AMP-binding enzyme JJB98_13905 PF00107 Zinc-binding dehydrogenase JJB98_13905 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_13920 PF00392 Bacterial regulatory proteins, gntR family JJB98_13920 PF00155 Aminotransferase class I and II JJB98_13930 PF00174 Oxidoreductase molybdopterin binding domain JJB98_13935 PF00067 Cytochrome P450 JJB98_13945 PF00440 Bacterial regulatory proteins, tetR family JJB98_13955 PF01425 Amidase JJB98_13960 PF00106 short chain dehydrogenase JJB98_13965 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_13970 PF02615 Malate/L-lactate dehydrogenase JJB98_13975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_13975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_13980 PF01546 Peptidase family M20/M25/M40 JJB98_13980 PF07687 Peptidase dimerisation domain JJB98_13985 PF03466 LysR substrate binding domain JJB98_13985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_13990 PF07286 Protein of unknown function (DUF1445) JJB98_14000 PF02653 Branched-chain amino acid transport system / permease component JJB98_14005 PF02653 Branched-chain amino acid transport system / permease component JJB98_14010 PF00005 ABC transporter JJB98_14015 PF00005 ABC transporter JJB98_14020 PF00596 Class II Aldolase and Adducin N-terminal domain JJB98_14025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_14025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_14030 PF01261 Xylose isomerase-like TIM barrel JJB98_14035 PF07005 Sugar-binding N-terminal domain JJB98_14035 PF17042 Nucleotide-binding C-terminal domain JJB98_14040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_14040 PF12729 Four helix bundle sensory module for signal transduction JJB98_14040 PF00672 HAMP domain JJB98_14050 PF03060 Nitronate monooxygenase JJB98_14060 PF02798 Glutathione S-transferase, N-terminal domain JJB98_14065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_14065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_14065 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_14080 PF00378 Enoyl-CoA hydratase/isomerase JJB98_14095 PF00378 Enoyl-CoA hydratase/isomerase JJB98_14100 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_14100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_14100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_14105 PF13193 AMP-binding enzyme C-terminal domain JJB98_14105 PF00501 AMP-binding enzyme JJB98_14115 PF00378 Enoyl-CoA hydratase/isomerase JJB98_14120 PF13193 AMP-binding enzyme C-terminal domain JJB98_14120 PF00501 AMP-binding enzyme JJB98_14145 PF00311 Phosphoenolpyruvate carboxylase JJB98_14150 PF08450 SMP-30/Gluconolactonase/LRE-like region JJB98_14155 PF00106 short chain dehydrogenase JJB98_14170 PF01425 Amidase JJB98_14180 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA JJB98_14185 PF13532 2OG-Fe(II) oxygenase superfamily JJB98_14190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_14190 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_14190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_14195 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_14200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_14205 PF00171 Aldehyde dehydrogenase family JJB98_14215 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_14220 PF01047 MarR family JJB98_14225 PF03328 HpcH/HpaI aldolase/citrate lyase family JJB98_14230 PF08666 SAF domain JJB98_14230 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JJB98_14250 PF01227 GTP cyclohydrolase I JJB98_14255 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_14255 PF14759 Reductase C-terminal JJB98_14265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_14265 PF00005 ABC transporter JJB98_14270 PF00005 ABC transporter JJB98_14270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_14275 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_14275 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_14280 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_14285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_14315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_14325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_14325 PF08269 Cache domain JJB98_14330 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JJB98_14335 PF04055 Radical SAM superfamily JJB98_14335 PF13282 Domain of unknown function (DUF4070) JJB98_14335 PF02310 B12 binding domain JJB98_14340 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JJB98_14370 PF01593 Flavin containing amine oxidoreductase JJB98_14375 PF13243 Squalene-hopene cyclase C-terminal domain JJB98_14375 PF13249 Squalene-hopene cyclase N-terminal domain JJB98_14380 PF01048 Phosphorylase superfamily JJB98_14385 PF00378 Enoyl-CoA hydratase/isomerase JJB98_14400 PF04055 Radical SAM superfamily JJB98_14405 PF02401 LytB protein JJB98_14420 PF00202 Aminotransferase class-III JJB98_14430 PF04542 Sigma-70 region 2 JJB98_14430 PF08281 Sigma-70, region 4 JJB98_14435 PF00127 Copper binding proteins, plastocyanin/azurin family JJB98_14450 PF00732 GMC oxidoreductase JJB98_14450 PF05199 GMC oxidoreductase JJB98_14455 PF07687 Peptidase dimerisation domain JJB98_14455 PF01546 Peptidase family M20/M25/M40 JJB98_14465 PF03167 Uracil DNA glycosylase superfamily JJB98_14485 PF14579 Helix-hairpin-helix motif JJB98_14485 PF01336 OB-fold nucleic acid binding domain JJB98_14485 PF07733 Bacterial DNA polymerase III alpha NTPase domain JJB98_14485 PF02811 PHP domain JJB98_14485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JJB98_14495 PF02515 CoA-transferase family III JJB98_14505 PF00873 AcrB/AcrD/AcrF family JJB98_14510 PF04909 Amidohydrolase JJB98_14525 PF02321 Outer membrane efflux protein JJB98_14530 PF00378 Enoyl-CoA hydratase/isomerase JJB98_14540 PF04545 Sigma-70, region 4 JJB98_14540 PF04542 Sigma-70 region 2 JJB98_14555 PF00990 Diguanylate cyclase, GGDEF domain JJB98_14555 PF00072 Response regulator receiver domain JJB98_14570 PF00082 Subtilase family JJB98_14580 PF01541 GIY-YIG catalytic domain JJB98_14600 PF01970 Tripartite tricarboxylate transporter TctA family JJB98_14630 PF02310 B12 binding domain JJB98_14630 PF01642 Methylmalonyl-CoA mutase JJB98_14645 PF01642 Methylmalonyl-CoA mutase JJB98_14650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JJB98_14655 PF02152 Dihydroneopterin aldolase JJB98_14660 PF00809 Pterin binding enzyme JJB98_14675 PF05872 Bacterial protein of unknown function (DUF853) JJB98_14685 PF00596 Class II Aldolase and Adducin N-terminal domain JJB98_14700 PF05443 ROS/MUCR transcriptional regulator protein JJB98_14705 PF02657 Fe-S metabolism associated domain JJB98_14710 PF12706 Beta-lactamase superfamily domain JJB98_14715 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_14720 PF01614 Bacterial transcriptional regulator JJB98_14720 PF09339 IclR helix-turn-helix domain JJB98_14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_14730 PF00512 His Kinase A (phospho-acceptor) domain JJB98_14775 PF03960 ArsC family JJB98_14780 PF00230 Major intrinsic protein JJB98_14825 PF17092 Penicillin-binding protein OB-like domain JJB98_14825 PF00905 Penicillin binding protein transpeptidase domain JJB98_14825 PF00912 Transglycosylase JJB98_14830 PF03692 Putative zinc- or iron-chelating domain JJB98_14835 PF07690 Major Facilitator Superfamily JJB98_14840 PF00072 Response regulator receiver domain JJB98_14840 PF13426 PAS domain JJB98_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_14845 PF00072 Response regulator receiver domain JJB98_14845 PF13426 PAS domain JJB98_14850 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_14850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_14850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_14870 PF02735 Ku70/Ku80 beta-barrel domain JJB98_14880 PF00072 Response regulator receiver domain JJB98_14880 PF00486 Transcriptional regulatory protein, C terminal JJB98_14885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_14905 PF03100 CcmE JJB98_14910 PF01578 Cytochrome C assembly protein JJB98_14910 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JJB98_14915 PF03918 Cytochrome C biogenesis protein JJB98_14920 PF13180 PDZ domain JJB98_14925 PF00072 Response regulator receiver domain JJB98_14925 PF00486 Transcriptional regulatory protein, C terminal JJB98_14930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_14930 PF00512 His Kinase A (phospho-acceptor) domain JJB98_14930 PF00672 HAMP domain JJB98_14935 PF03710 Glutamate-ammonia ligase adenylyltransferase JJB98_14935 PF08335 GlnD PII-uridylyltransferase JJB98_14945 PF02634 FdhD/NarQ family JJB98_14950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJB98_14950 PF01568 Molydopterin dinucleotide binding domain JJB98_14950 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JJB98_14950 PF00037 4Fe-4S binding domain JJB98_14950 PF00384 Molybdopterin oxidoreductase JJB98_14955 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJB98_14955 PF00037 4Fe-4S binding domain JJB98_14955 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJB98_14965 PF03466 LysR substrate binding domain JJB98_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_14970 PF00989 PAS fold JJB98_14970 PF00512 His Kinase A (phospho-acceptor) domain JJB98_14970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_14975 PF16916 Dimerisation domain of Zinc Transporter JJB98_14975 PF01545 Cation efflux family JJB98_14980 PF00550 Phosphopantetheine attachment site JJB98_14980 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_14980 PF14765 Polyketide synthase dehydratase JJB98_14980 PF00698 Acyl transferase domain JJB98_14980 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_14980 PF08659 KR domain JJB98_14980 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_14980 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_14985 PF03060 Nitronate monooxygenase JJB98_15000 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_15005 PF08546 Ketopantoate reductase PanE/ApbA C terminal JJB98_15005 PF02558 Ketopantoate reductase PanE/ApbA JJB98_15015 PF07690 Major Facilitator Superfamily JJB98_15020 PF07690 Major Facilitator Superfamily JJB98_15030 PF00012 Hsp70 protein JJB98_15045 PF02515 CoA-transferase family III JJB98_15050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_15050 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_15050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_15055 PF00392 Bacterial regulatory proteins, gntR family JJB98_15055 PF07729 FCD domain JJB98_15060 PF13607 Succinyl-CoA ligase like flavodoxin domain JJB98_15060 PF13380 CoA binding domain JJB98_15065 PF01614 Bacterial transcriptional regulator JJB98_15065 PF09339 IclR helix-turn-helix domain JJB98_15075 PF13382 Adenine deaminase C-terminal domain JJB98_15075 PF01979 Amidohydrolase family JJB98_15080 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_15080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_15080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_15085 PF01261 Xylose isomerase-like TIM barrel JJB98_15090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_15090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_15105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_15105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_15115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_15115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_15125 PF00583 Acetyltransferase (GNAT) family JJB98_15135 PF01037 Lrp/AsnC ligand binding domain JJB98_15140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJB98_15140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJB98_15150 PF03601 Conserved hypothetical protein 698 JJB98_15155 PF00005 ABC transporter JJB98_15160 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_15165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JJB98_15170 PF00027 Cyclic nucleotide-binding domain JJB98_15170 PF13545 Crp-like helix-turn-helix domain JJB98_15180 PF00175 Oxidoreductase NAD-binding domain JJB98_15180 PF00970 Oxidoreductase FAD-binding domain JJB98_15185 PF00890 FAD binding domain JJB98_15185 PF02910 Fumarate reductase flavoprotein C-term JJB98_15205 PF13407 Periplasmic binding protein domain JJB98_15210 PF00005 ABC transporter JJB98_15215 PF02653 Branched-chain amino acid transport system / permease component JJB98_15220 PF02653 Branched-chain amino acid transport system / permease component JJB98_15230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_15235 PF01263 Aldose 1-epimerase JJB98_15240 PF08450 SMP-30/Gluconolactonase/LRE-like region JJB98_15245 PF13407 Periplasmic binding protein domain JJB98_15250 PF00005 ABC transporter JJB98_15255 PF02653 Branched-chain amino acid transport system / permease component JJB98_15260 PF13419 Haloacid dehalogenase-like hydrolase JJB98_15275 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_15280 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_15285 PF00005 ABC transporter JJB98_15285 PF08402 TOBE domain JJB98_15295 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJB98_15295 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJB98_15300 PF00294 pfkB family carbohydrate kinase JJB98_15305 PF01425 Amidase JJB98_15310 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_15315 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_15315 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_15320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_15320 PF00005 ABC transporter JJB98_15325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_15325 PF00005 ABC transporter JJB98_15330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_15335 PF01738 Dienelactone hydrolase family JJB98_15340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_15345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_15345 PF03466 LysR substrate binding domain JJB98_15360 PF00881 Nitroreductase family JJB98_15365 PF02654 Cobalamin-5-phosphate synthase JJB98_15370 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JJB98_15375 PF03186 CobD/Cbib protein JJB98_15380 PF00155 Aminotransferase class I and II JJB98_15385 PF07685 CobB/CobQ-like glutamine amidotransferase domain JJB98_15385 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JJB98_15390 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JJB98_15400 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJB98_15400 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJB98_15405 PF02514 CobN/Magnesium Chelatase JJB98_15410 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJB98_15415 PF02570 Precorrin-8X methylmutase JJB98_15420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_15425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_15430 PF02571 Precorrin-6x reductase CbiJ/CobK JJB98_15435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_15445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_15450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JJB98_15450 PF07685 CobB/CobQ-like glutamine amidotransferase domain JJB98_15455 PF14824 Sirohaem biosynthesis protein central JJB98_15455 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_15455 PF10414 Sirohaem synthase dimerisation region JJB98_15465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJB98_15470 PF02277 Phosphoribosyltransferase JJB98_15480 PF07715 TonB-dependent Receptor Plug Domain JJB98_15480 PF00593 TonB dependent receptor JJB98_15500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJB98_15500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJB98_15505 PF00005 ABC transporter JJB98_15510 PF02653 Branched-chain amino acid transport system / permease component JJB98_15515 PF13407 Periplasmic binding protein domain JJB98_15525 PF00534 Glycosyl transferases group 1 JJB98_15525 PF13439 Glycosyltransferase Family 4 JJB98_15535 PF13932 GidA associated domain JJB98_15535 PF01134 Glucose inhibited division protein A JJB98_15545 PF03824 High-affinity nickel-transport protein JJB98_15565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_15565 PF00512 His Kinase A (phospho-acceptor) domain JJB98_15565 PF00989 PAS fold JJB98_15570 PF03600 Citrate transporter JJB98_15575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_15575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_15585 PF10609 NUBPL iron-transfer P-loop NTPase JJB98_15590 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_15595 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_15605 PF00486 Transcriptional regulatory protein, C terminal JJB98_15605 PF00072 Response regulator receiver domain JJB98_15610 PF00512 His Kinase A (phospho-acceptor) domain JJB98_15610 PF00672 HAMP domain JJB98_15610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_15615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_15625 PF04055 Radical SAM superfamily JJB98_15625 PF06463 Molybdenum Cofactor Synthesis C JJB98_15635 PF13419 Haloacid dehalogenase-like hydrolase JJB98_15640 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JJB98_15650 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_15650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJB98_15675 PF03741 Integral membrane protein TerC family JJB98_15680 PF03350 Uncharacterized protein family, UPF0114 JJB98_15695 PF01474 Class-II DAHP synthetase family JJB98_15700 PF01219 Prokaryotic diacylglycerol kinase JJB98_15705 PF02540 NAD synthase JJB98_15705 PF00795 Carbon-nitrogen hydrolase JJB98_15720 PF01406 tRNA synthetases class I (C) catalytic domain JJB98_15730 PF08502 LeuA allosteric (dimerisation) domain JJB98_15730 PF00682 HMGL-like JJB98_15740 PF03641 Possible lysine decarboxylase JJB98_15745 PF00664 ABC transporter transmembrane region JJB98_15745 PF00005 ABC transporter JJB98_15750 PF02666 Phosphatidylserine decarboxylase JJB98_15755 PF01066 CDP-alcohol phosphatidyltransferase JJB98_15765 PF00106 short chain dehydrogenase JJB98_15770 PF01618 MotA/TolQ/ExbB proton channel family JJB98_15775 PF00691 OmpA family JJB98_15775 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJB98_15780 PF02705 K+ potassium transporter JJB98_15785 PF02705 K+ potassium transporter JJB98_15795 PF00155 Aminotransferase class I and II JJB98_15800 PF13416 Bacterial extracellular solute-binding protein JJB98_15820 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_15820 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_15830 PF07977 FabA-like domain JJB98_15835 PF00550 Phosphopantetheine attachment site JJB98_15860 PF02308 MgtC family JJB98_15870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_15875 PF00034 Cytochrome c JJB98_15875 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_15875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_15880 PF01799 [2Fe-2S] binding domain JJB98_15880 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_15885 PF00037 4Fe-4S binding domain JJB98_15900 PF13458 Periplasmic binding protein JJB98_15910 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_15910 PF00005 ABC transporter JJB98_15915 PF00005 ABC transporter JJB98_15920 PF12802 MarR family JJB98_15925 PF01979 Amidohydrolase family JJB98_15930 PF00970 Oxidoreductase FAD-binding domain JJB98_15930 PF00175 Oxidoreductase NAD-binding domain JJB98_15950 PF00571 CBS domain JJB98_16000 PF04909 Amidohydrolase JJB98_16005 PF02585 GlcNAc-PI de-N-acetylase JJB98_16010 PF03737 Aldolase/RraA JJB98_16030 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_16055 PF00873 AcrB/AcrD/AcrF family JJB98_16060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJB98_16060 PF00529 HlyD membrane-fusion protein of T1SS JJB98_16065 PF00440 Bacterial regulatory proteins, tetR family JJB98_16075 PF01979 Amidohydrolase family JJB98_16085 PF12706 Beta-lactamase superfamily domain JJB98_16095 PF07237 Protein of unknown function (DUF1428) JJB98_16105 PF00873 AcrB/AcrD/AcrF family JJB98_16110 PF13533 Biotin-lipoyl like JJB98_16120 PF00593 TonB dependent receptor JJB98_16120 PF07715 TonB-dependent Receptor Plug Domain JJB98_16125 PF18331 PKHD-type hydroxylase C-terminal domain JJB98_16125 PF13640 2OG-Fe(II) oxygenase superfamily JJB98_16130 PF01618 MotA/TolQ/ExbB proton channel family JJB98_16135 PF02472 Biopolymer transport protein ExbD/TolR JJB98_16150 PF02163 Peptidase family M50 JJB98_16170 PF00920 Dehydratase family JJB98_16175 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJB98_16175 PF00356 Bacterial regulatory proteins, lacI family JJB98_16180 PF00005 ABC transporter JJB98_16180 PF03459 TOBE domain JJB98_16180 PF17912 MalK OB fold domain JJB98_16190 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_16195 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_16200 PF01370 NAD dependent epimerase/dehydratase family JJB98_16205 PF00294 pfkB family carbohydrate kinase JJB98_16210 PF01081 KDPG and KHG aldolase JJB98_16215 PF00108 Thiolase, N-terminal domain JJB98_16215 PF02803 Thiolase, C-terminal domain JJB98_16225 PF02515 CoA-transferase family III JJB98_16230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJB98_16230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJB98_16250 PF00027 Cyclic nucleotide-binding domain JJB98_16250 PF04960 Glutaminase JJB98_16265 PF00364 Biotin-requiring enzyme JJB98_16275 PF01039 Carboxyl transferase domain JJB98_16285 PF02913 FAD linked oxidases, C-terminal domain JJB98_16285 PF01565 FAD binding domain JJB98_16305 PF16925 Tetracyclin repressor-like, C-terminal domain JJB98_16305 PF00440 Bacterial regulatory proteins, tetR family JJB98_16315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_16315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_16315 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_16330 PF07690 Major Facilitator Superfamily JJB98_16335 PF00108 Thiolase, N-terminal domain JJB98_16335 PF02803 Thiolase, C-terminal domain JJB98_16340 PF00378 Enoyl-CoA hydratase/isomerase JJB98_16350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_16350 PF03466 LysR substrate binding domain JJB98_16355 PF00171 Aldehyde dehydrogenase family JJB98_16360 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_16360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_16360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_16370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_16370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_16375 PF13193 AMP-binding enzyme C-terminal domain JJB98_16375 PF00501 AMP-binding enzyme JJB98_16380 PF01575 MaoC like domain JJB98_16385 PF00106 short chain dehydrogenase JJB98_16395 PF14031 Putative serine dehydratase domain JJB98_16395 PF01168 Alanine racemase, N-terminal domain JJB98_16400 PF16326 ABC transporter C-terminal domain JJB98_16400 PF00005 ABC transporter JJB98_16405 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JJB98_16415 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_16415 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_16420 PF02541 Ppx/GppA phosphatase family JJB98_16425 PF01728 FtsJ-like methyltransferase JJB98_16430 PF07690 Major Facilitator Superfamily JJB98_16435 PF00571 CBS domain JJB98_16435 PF00478 IMP dehydrogenase / GMP reductase domain JJB98_16440 PF00107 Zinc-binding dehydrogenase JJB98_16440 PF16884 N-terminal domain of oxidoreductase JJB98_16460 PF01189 16S rRNA methyltransferase RsmB/F JJB98_16460 PF01029 NusB family JJB98_16465 PF00313 'Cold-shock' DNA-binding domain JJB98_16480 PF00958 GMP synthase C terminal domain JJB98_16480 PF02540 NAD synthase JJB98_16480 PF00117 Glutamine amidotransferase class-I JJB98_16500 PF05368 NmrA-like family JJB98_16525 PF00106 short chain dehydrogenase JJB98_16545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_16545 PF03466 LysR substrate binding domain JJB98_16550 PF02311 AraC-like ligand binding domain JJB98_16550 PF12833 Helix-turn-helix domain JJB98_16560 PF07690 Major Facilitator Superfamily JJB98_16570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_16590 PF01593 Flavin containing amine oxidoreductase JJB98_16595 PF00107 Zinc-binding dehydrogenase JJB98_16595 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_16620 PF00698 Acyl transferase domain JJB98_16620 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_16620 PF08990 Erythronolide synthase docking JJB98_16620 PF14765 Polyketide synthase dehydratase JJB98_16620 PF00550 Phosphopantetheine attachment site JJB98_16620 PF08659 KR domain JJB98_16620 PF09277 Erythronolide synthase, docking JJB98_16620 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_16620 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_16620 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_16625 PF09084 NMT1/THI5 like JJB98_16630 PF00005 ABC transporter JJB98_16635 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_16640 PF13378 Enolase C-terminal domain-like JJB98_16640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JJB98_16645 PF05199 GMC oxidoreductase JJB98_16645 PF00732 GMC oxidoreductase JJB98_16650 PF00392 Bacterial regulatory proteins, gntR family JJB98_16650 PF07702 UTRA domain JJB98_16660 PF03781 Sulfatase-modifying factor enzyme 1 JJB98_16670 PF00135 Carboxylesterase family JJB98_16675 PF02311 AraC-like ligand binding domain JJB98_16675 PF12833 Helix-turn-helix domain JJB98_16690 PF01327 Polypeptide deformylase JJB98_16700 PF07690 Major Facilitator Superfamily JJB98_16725 PF03466 LysR substrate binding domain JJB98_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_16735 PF00529 HlyD membrane-fusion protein of T1SS JJB98_16740 PF00664 ABC transporter transmembrane region JJB98_16740 PF00005 ABC transporter JJB98_16750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_16750 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_16750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_16755 PF00654 Voltage gated chloride channel JJB98_16765 PF00583 Acetyltransferase (GNAT) family JJB98_16770 PF00144 Beta-lactamase JJB98_16780 PF02798 Glutathione S-transferase, N-terminal domain JJB98_16780 PF00043 Glutathione S-transferase, C-terminal domain JJB98_16785 PF01588 Putative tRNA binding domain JJB98_16785 PF09334 tRNA synthetases class I (M) JJB98_16785 PF08264 Anticodon-binding domain of tRNA JJB98_16790 PF03960 ArsC family JJB98_16800 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_16800 PF00005 ABC transporter JJB98_16805 PF00005 ABC transporter JJB98_16815 PF02653 Branched-chain amino acid transport system / permease component JJB98_16825 PF01865 Protein of unknown function DUF47 JJB98_16830 PF01384 Phosphate transporter family JJB98_16835 PF00893 Small Multidrug Resistance protein JJB98_16840 PF00009 Elongation factor Tu GTP binding domain JJB98_16840 PF03144 Elongation factor Tu domain 2 JJB98_16840 PF16658 Class II release factor RF3, C-terminal domain JJB98_16855 PF13193 AMP-binding enzyme C-terminal domain JJB98_16855 PF00501 AMP-binding enzyme JJB98_16870 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JJB98_16870 PF01926 50S ribosome-binding GTPase JJB98_16875 PF07690 Major Facilitator Superfamily JJB98_16885 PF00106 short chain dehydrogenase JJB98_16890 PF00156 Phosphoribosyl transferase domain JJB98_16890 PF13537 Glutamine amidotransferase domain JJB98_16895 PF02674 Colicin V production protein JJB98_16900 PF18073 Rubredoxin metal binding domain JJB98_16900 PF06745 KaiC JJB98_16905 PF13407 Periplasmic binding protein domain JJB98_16910 PF00990 Diguanylate cyclase, GGDEF domain JJB98_16910 PF00563 EAL domain JJB98_16910 PF03707 Bacterial signalling protein N terminal repeat JJB98_16920 PF03372 Endonuclease/Exonuclease/phosphatase family JJB98_16930 PF00842 Alanine racemase, C-terminal domain JJB98_16930 PF01168 Alanine racemase, N-terminal domain JJB98_16935 PF03796 DnaB-like helicase C terminal domain JJB98_16935 PF00772 DnaB-like helicase N terminal domain JJB98_16960 PF01281 Ribosomal protein L9, N-terminal domain JJB98_16960 PF03948 Ribosomal protein L9, C-terminal domain JJB98_16970 PF01084 Ribosomal protein S18 JJB98_16975 PF01250 Ribosomal protein S6 JJB98_16990 PF00698 Acyl transferase domain JJB98_17000 PF00550 Phosphopantetheine attachment site JJB98_17005 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_17005 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_17010 PF02618 YceG-like family JJB98_17015 PF03755 YicC-like family, N-terminal region JJB98_17015 PF08340 Domain of unknown function (DUF1732) JJB98_17020 PF00625 Guanylate kinase JJB98_17030 PF13649 Methyltransferase domain JJB98_17040 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_17060 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_17060 PF00107 Zinc-binding dehydrogenase JJB98_17065 PF00398 Ribosomal RNA adenine dimethylase JJB98_17070 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JJB98_17080 PF03968 OstA-like protein JJB98_17080 PF04453 LPS transport system D JJB98_17090 PF03739 Lipopolysaccharide export system permease LptF/LptG JJB98_17095 PF02789 Cytosol aminopeptidase family, N-terminal domain JJB98_17095 PF00883 Cytosol aminopeptidase family, catalytic domain JJB98_17110 PF12848 ABC transporter JJB98_17110 PF00005 ABC transporter JJB98_17125 PF00334 Nucleoside diphosphate kinase JJB98_17130 PF03741 Integral membrane protein TerC family JJB98_17135 PF02541 Ppx/GppA phosphatase family JJB98_17140 PF13089 Polyphosphate kinase N-terminal domain JJB98_17140 PF17941 Polyphosphate kinase C-terminal domain 1 JJB98_17140 PF13090 Polyphosphate kinase C-terminal domain 2 JJB98_17140 PF02503 Polyphosphate kinase middle domain JJB98_17150 PF01066 CDP-alcohol phosphatidyltransferase JJB98_17155 PF00586 AIR synthase related protein, N-terminal domain JJB98_17155 PF02769 AIR synthase related protein, C-terminal domain JJB98_17160 PF00551 Formyl transferase JJB98_17165 PF00313 'Cold-shock' DNA-binding domain JJB98_17185 PF13673 Acetyltransferase (GNAT) domain JJB98_17200 PF00202 Aminotransferase class-III JJB98_17205 PF01612 3'-5' exonuclease JJB98_17205 PF00570 HRDC domain JJB98_17210 PF13416 Bacterial extracellular solute-binding protein JJB98_17215 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_17220 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_17230 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JJB98_17235 PF00152 tRNA synthetases class II (D, K and N) JJB98_17235 PF01336 OB-fold nucleic acid binding domain JJB98_17235 PF02938 GAD domain JJB98_17240 PF01515 Phosphate acetyl/butaryl transferase JJB98_17240 PF03949 Malic enzyme, NAD binding domain JJB98_17240 PF00390 Malic enzyme, N-terminal domain JJB98_17255 PF08402 TOBE domain JJB98_17255 PF00005 ABC transporter JJB98_17260 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_17265 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_17280 PF00255 Glutathione peroxidase JJB98_17290 PF05981 CreA protein JJB98_17310 PF00155 Aminotransferase class I and II JJB98_17310 PF00392 Bacterial regulatory proteins, gntR family JJB98_17320 PF01546 Peptidase family M20/M25/M40 JJB98_17320 PF07687 Peptidase dimerisation domain JJB98_17330 PF03301 Tryptophan 2,3-dioxygenase JJB98_17335 PF00266 Aminotransferase class-V JJB98_17365 PF13350 Tyrosine phosphatase family JJB98_17375 PF03951 Glutamine synthetase, beta-Grasp domain JJB98_17375 PF00120 Glutamine synthetase, catalytic domain JJB98_17420 PF00005 ABC transporter JJB98_17420 PF12848 ABC transporter JJB98_17425 PF12706 Beta-lactamase superfamily domain JJB98_17445 PF07859 alpha/beta hydrolase fold JJB98_17460 PF01966 HD domain JJB98_17460 PF11871 Domain of unknown function (DUF3391) JJB98_17475 PF12833 Helix-turn-helix domain JJB98_17485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_17485 PF00672 HAMP domain JJB98_17505 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_17510 PF00005 ABC transporter JJB98_17515 PF00701 Dihydrodipicolinate synthetase family JJB98_17520 PF17668 Acetyltransferase (GNAT) domain JJB98_17520 PF13530 Sterol carrier protein domain JJB98_17530 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_17535 PF00440 Bacterial regulatory proteins, tetR family JJB98_17545 PF05209 Septum formation inhibitor MinC, N-terminal domain JJB98_17545 PF03775 Septum formation inhibitor MinC, C-terminal domain JJB98_17550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JJB98_17555 PF03776 Septum formation topological specificity factor MinE JJB98_17585 PF17969 L,D-transpeptidase C-terminal domain JJB98_17585 PF03734 L,D-transpeptidase catalytic domain JJB98_17595 PF01047 MarR family JJB98_17600 PF01494 FAD binding domain JJB98_17600 PF07976 Phenol hydroxylase, C-terminal dimerisation domain JJB98_17625 PF00893 Small Multidrug Resistance protein JJB98_17630 PF08543 Phosphomethylpyrimidine kinase JJB98_17655 PF02805 Metal binding domain of Ada JJB98_17655 PF12833 Helix-turn-helix domain JJB98_17655 PF06029 AlkA N-terminal domain JJB98_17655 PF00730 HhH-GPD superfamily base excision DNA repair protein JJB98_17670 PF03831 PhnA domain JJB98_17670 PF08274 PhnA Zinc-Ribbon JJB98_17705 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JJB98_17725 PF03466 LysR substrate binding domain JJB98_17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_17745 PF02867 Ribonucleotide reductase, barrel domain JJB98_17745 PF08471 Class II vitamin B12-dependent ribonucleotide reductase JJB98_17750 PF00892 EamA-like transporter family JJB98_17755 PF13426 PAS domain JJB98_17755 PF00072 Response regulator receiver domain JJB98_17755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_17760 PF00486 Transcriptional regulatory protein, C terminal JJB98_17760 PF00072 Response regulator receiver domain JJB98_17775 PF01965 DJ-1/PfpI family JJB98_17780 PF12833 Helix-turn-helix domain JJB98_17780 PF01965 DJ-1/PfpI family JJB98_17795 PF07859 alpha/beta hydrolase fold JJB98_17805 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JJB98_17810 PF00072 Response regulator receiver domain JJB98_17815 PF00072 Response regulator receiver domain JJB98_17820 PF00989 PAS fold JJB98_17820 PF00672 HAMP domain JJB98_17820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_17820 PF18698 Histidine kinase sensor domain JJB98_17820 PF00512 His Kinase A (phospho-acceptor) domain JJB98_17825 PF02785 Biotin carboxylase C-terminal domain JJB98_17825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_17825 PF00289 Biotin carboxylase, N-terminal domain JJB98_17830 PF00364 Biotin-requiring enzyme JJB98_17835 PF01220 Dehydroquinase class II JJB98_17855 PF00155 Aminotransferase class I and II JJB98_17860 PF02632 BioY family JJB98_17865 PF00375 Sodium:dicarboxylate symporter family JJB98_17870 PF01266 FAD dependent oxidoreductase JJB98_17875 PF01425 Amidase JJB98_17880 PF12111 Polyribonucleotide phosphorylase C terminal JJB98_17880 PF10150 Ribonuclease E/G family JJB98_17880 PF00575 S1 RNA binding domain JJB98_17880 PF12111 Polyribonucleotide phosphorylase C terminal JJB98_17880 PF10150 Ribonuclease E/G family JJB98_17880 PF00575 S1 RNA binding domain JJB98_17885 PF11741 AMIN domain JJB98_17885 PF01520 N-acetylmuramoyl-L-alanine amidase JJB98_17890 PF17092 Penicillin-binding protein OB-like domain JJB98_17890 PF00912 Transglycosylase JJB98_17890 PF00905 Penicillin binding protein transpeptidase domain JJB98_17900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_17900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_17915 PF01476 LysM domain JJB98_17915 PF08525 Opacity-associated protein A N-terminal motif JJB98_17915 PF01551 Peptidase family M23 JJB98_17920 PF00578 AhpC/TSA family JJB98_17930 PF07681 DoxX JJB98_17940 PF00579 tRNA synthetases class I (W and Y) JJB98_17945 PF03702 Anhydro-N-acetylmuramic acid kinase JJB98_17960 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JJB98_17975 PF00266 Aminotransferase class-V JJB98_17980 PF01458 Uncharacterized protein family (UPF0051) JJB98_17985 PF00005 ABC transporter JJB98_17990 PF01458 Uncharacterized protein family (UPF0051) JJB98_17995 PF00266 Aminotransferase class-V JJB98_18000 PF01883 Iron-sulfur cluster assembly protein JJB98_18005 PF01521 Iron-sulphur cluster biosynthesis JJB98_18015 PF07977 FabA-like domain JJB98_18020 PF00990 Diguanylate cyclase, GGDEF domain JJB98_18020 PF00072 Response regulator receiver domain JJB98_18025 PF00270 DEAD/DEAH box helicase JJB98_18025 PF00271 Helicase conserved C-terminal domain JJB98_18035 PF01494 FAD binding domain JJB98_18045 PF00106 short chain dehydrogenase JJB98_18065 PF01751 Toprim domain JJB98_18065 PF00986 DNA gyrase B subunit, carboxyl terminus JJB98_18065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_18065 PF00204 DNA gyrase B JJB98_18070 PF09335 SNARE associated Golgi protein JJB98_18080 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJB98_18090 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JJB98_18090 PF00561 alpha/beta hydrolase fold JJB98_18100 PF00155 Aminotransferase class I and II JJB98_18105 PF00742 Homoserine dehydrogenase JJB98_18105 PF01842 ACT domain JJB98_18105 PF03447 Homoserine dehydrogenase, NAD binding domain JJB98_18110 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JJB98_18125 PF07729 FCD domain JJB98_18125 PF00392 Bacterial regulatory proteins, gntR family JJB98_18130 PF00378 Enoyl-CoA hydratase/isomerase JJB98_18135 PF02515 CoA-transferase family III JJB98_18150 PF01970 Tripartite tricarboxylate transporter TctA family JJB98_18155 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JJB98_18165 PF04239 Protein of unknown function (DUF421) JJB98_18170 PF13718 GNAT acetyltransferase 2 JJB98_18170 PF17176 tRNA-binding domain JJB98_18170 PF05127 Helicase JJB98_18180 PF01368 DHH family JJB98_18180 PF17768 RecJ OB domain JJB98_18180 PF02272 DHHA1 domain JJB98_18210 PF02627 Carboxymuconolactone decarboxylase family JJB98_18220 PF05661 Protein of unknown function (DUF808) JJB98_18230 PF09285 Elongation factor P, C-terminal JJB98_18230 PF01132 Elongation factor P (EF-P) OB domain JJB98_18230 PF08207 Elongation factor P (EF-P) KOW-like domain JJB98_18235 PF00152 tRNA synthetases class II (D, K and N) JJB98_18240 PF04055 Radical SAM superfamily JJB98_18240 PF12544 Lysine-2,3-aminomutase JJB98_18250 PF00793 DAHP synthetase I family JJB98_18295 PF02798 Glutathione S-transferase, N-terminal domain JJB98_18300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJB98_18310 PF00216 Bacterial DNA-binding protein JJB98_18345 PF02146 Sir2 family JJB98_18350 PF00313 'Cold-shock' DNA-binding domain JJB98_18380 PF01037 Lrp/AsnC ligand binding domain JJB98_18385 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JJB98_18385 PF12833 Helix-turn-helix domain JJB98_18390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_18390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_18390 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_18395 PF01039 Carboxyl transferase domain JJB98_18400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_18400 PF02785 Biotin carboxylase C-terminal domain JJB98_18400 PF00289 Biotin carboxylase, N-terminal domain JJB98_18400 PF00364 Biotin-requiring enzyme JJB98_18400 PF18140 Propionyl-coenzyme A carboxylase BT domain JJB98_18405 PF00682 HMGL-like JJB98_18410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_18420 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_18480 PF01835 MG2 domain JJB98_18480 PF00207 Alpha-2-macroglobulin family JJB98_18480 PF17962 Bacterial macroglobulin domain 6 JJB98_18480 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JJB98_18480 PF07703 Alpha-2-macroglobulin bait region domain JJB98_18480 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JJB98_18480 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JJB98_18480 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JJB98_18485 PF06832 Penicillin-Binding Protein C-terminus Family JJB98_18485 PF00912 Transglycosylase JJB98_18485 PF00905 Penicillin binding protein transpeptidase domain JJB98_18490 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JJB98_18495 PF01569 PAP2 superfamily JJB98_18500 PF00535 Glycosyl transferase family 2 JJB98_18510 PF02690 Na+/Pi-cotransporter JJB98_18515 PF01053 Cys/Met metabolism PLP-dependent enzyme JJB98_18520 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_18525 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_18530 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_18535 PF00005 ABC transporter JJB98_18560 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_18560 PF00571 CBS domain JJB98_18565 PF02321 Outer membrane efflux protein JJB98_18570 PF13533 Biotin-lipoyl like JJB98_18575 PF00873 AcrB/AcrD/AcrF family JJB98_18580 PF00873 AcrB/AcrD/AcrF family JJB98_18620 PF15975 Flotillin JJB98_18620 PF01145 SPFH domain / Band 7 family JJB98_18665 PF00239 Resolvase, N terminal domain JJB98_18665 PF02796 Helix-turn-helix domain of resolvase JJB98_18685 PF02321 Outer membrane efflux protein JJB98_18695 PF08264 Anticodon-binding domain of tRNA JJB98_18695 PF00133 tRNA synthetases class I (I, L, M and V) JJB98_18695 PF10458 Valyl tRNA synthetase tRNA binding arm JJB98_18700 PF02245 Methylpurine-DNA glycosylase (MPG) JJB98_18705 PF04055 Radical SAM superfamily JJB98_18710 PF03364 Polyketide cyclase / dehydrase and lipid transport JJB98_18715 PF02464 Competence-damaged protein JJB98_18715 PF00994 Probable molybdopterin binding domain JJB98_18720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JJB98_18720 PF02542 YgbB family JJB98_18725 PF01207 Dihydrouridine synthase (Dus) JJB98_18730 PF00512 His Kinase A (phospho-acceptor) domain JJB98_18730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_18730 PF00989 PAS fold JJB98_18735 PF02954 Bacterial regulatory protein, Fis family JJB98_18735 PF00072 Response regulator receiver domain JJB98_18735 PF00158 Sigma-54 interaction domain JJB98_18745 PF00672 HAMP domain JJB98_18745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_18745 PF00512 His Kinase A (phospho-acceptor) domain JJB98_18745 PF00989 PAS fold JJB98_18750 PF02954 Bacterial regulatory protein, Fis family JJB98_18750 PF00072 Response regulator receiver domain JJB98_18750 PF00158 Sigma-54 interaction domain JJB98_18755 PF17209 Hfq protein JJB98_18760 PF01926 50S ribosome-binding GTPase JJB98_18760 PF13167 GTP-binding GTPase N-terminal JJB98_18760 PF16360 GTP-binding GTPase Middle Region JJB98_18765 PF03819 MazG nucleotide pyrophosphohydrolase domain JJB98_18770 PF06508 Queuosine biosynthesis protein QueC JJB98_18780 PF02211 Nitrile hydratase beta subunit JJB98_18785 PF02979 Nitrile hydratase, alpha chain JJB98_18795 PF07715 TonB-dependent Receptor Plug Domain JJB98_18795 PF00593 TonB dependent receptor JJB98_18815 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_18815 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JJB98_18820 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_18825 PF13193 AMP-binding enzyme C-terminal domain JJB98_18825 PF00501 AMP-binding enzyme JJB98_18835 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_18845 PF03099 Biotin/lipoate A/B protein ligase family JJB98_18845 PF12706 Beta-lactamase superfamily domain JJB98_18850 PF01026 TatD related DNase JJB98_18870 PF09334 tRNA synthetases class I (M) JJB98_18870 PF08264 Anticodon-binding domain of tRNA JJB98_18875 PF09115 DNA polymerase III, delta subunit, C terminal JJB98_18880 PF02223 Thymidylate kinase JJB98_18885 PF07943 Penicillin-binding protein 5, C-terminal domain JJB98_18885 PF00768 D-alanyl-D-alanine carboxypeptidase JJB98_18890 PF00561 alpha/beta hydrolase fold JJB98_18895 PF05036 Sporulation related domain JJB98_18895 PF03330 Lytic transglycolase JJB98_18910 PF09335 SNARE associated Golgi protein JJB98_18965 PF00920 Dehydratase family JJB98_18990 PF02540 NAD synthase JJB98_18990 PF00795 Carbon-nitrogen hydrolase JJB98_18995 PF00561 alpha/beta hydrolase fold JJB98_19000 PF00857 Isochorismatase family JJB98_19005 PF02685 Glucokinase JJB98_19015 PF00072 Response regulator receiver domain JJB98_19015 PF03861 ANTAR domain JJB98_19030 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_19035 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_19040 PF00005 ABC transporter JJB98_19040 PF08402 TOBE domain JJB98_19045 PF01842 ACT domain JJB98_19045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_19045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_19060 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_19080 PF03737 Aldolase/RraA JJB98_19080 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_19090 PF02626 Carboxyltransferase domain, subdomain A and B JJB98_19095 PF03746 LamB/YcsF family JJB98_19105 PF00175 Oxidoreductase NAD-binding domain JJB98_19105 PF00258 Flavodoxin JJB98_19105 PF00667 FAD binding domain JJB98_19110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJB98_19110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJB98_19120 PF03861 ANTAR domain JJB98_19120 PF08376 Nitrate and nitrite sensing JJB98_19125 PF18693 TRAM domain JJB98_19125 PF00919 Uncharacterized protein family UPF0004 JJB98_19125 PF04055 Radical SAM superfamily JJB98_19135 PF00202 Aminotransferase class-III JJB98_19145 PF00982 Glycosyltransferase family 20 JJB98_19165 PF00107 Zinc-binding dehydrogenase JJB98_19165 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_19175 PF01494 FAD binding domain JJB98_19180 PF03547 Membrane transport protein JJB98_19195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_19210 PF00067 Cytochrome P450 JJB98_19215 PF00271 Helicase conserved C-terminal domain JJB98_19215 PF02559 CarD-like/TRCF domain JJB98_19215 PF17757 UvrB interaction domain JJB98_19215 PF03461 TRCF domain JJB98_19215 PF00270 DEAD/DEAH box helicase JJB98_19230 PF00270 DEAD/DEAH box helicase JJB98_19230 PF17191 RecG wedge domain JJB98_19230 PF00271 Helicase conserved C-terminal domain JJB98_19245 PF01380 SIS domain JJB98_19255 PF12804 MobA-like NTP transferase domain JJB98_19255 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_19290 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system JJB98_19305 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system JJB98_19325 PF03461 TRCF domain JJB98_19325 PF00271 Helicase conserved C-terminal domain JJB98_19325 PF02559 CarD-like/TRCF domain JJB98_19325 PF17757 UvrB interaction domain JJB98_19325 PF00270 DEAD/DEAH box helicase JJB98_19340 PF01594 AI-2E family transporter JJB98_19370 PF02911 Formyl transferase, C-terminal domain JJB98_19370 PF00551 Formyl transferase JJB98_19390 PF00892 EamA-like transporter family JJB98_19405 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_19415 PF01702 Queuine tRNA-ribosyltransferase JJB98_19420 PF16859 Tetracyclin repressor-like, C-terminal domain JJB98_19420 PF00440 Bacterial regulatory proteins, tetR family JJB98_19430 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJB98_19430 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJB98_19435 PF01850 PIN domain JJB98_19440 PF07704 Rv0623-like transcription factor JJB98_19445 PF02547 Queuosine biosynthesis protein JJB98_19450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JJB98_19460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JJB98_19465 PF01467 Cytidylyltransferase-like JJB98_19485 PF02687 FtsX-like permease family JJB98_19485 PF12704 MacB-like periplasmic core domain JJB98_19485 PF00005 ABC transporter JJB98_19490 PF07859 alpha/beta hydrolase fold JJB98_19495 PF03989 DNA gyrase C-terminal domain, beta-propeller JJB98_19495 PF00521 DNA gyrase/topoisomerase IV, subunit A JJB98_19500 PF00436 Single-strand binding protein family JJB98_19510 PF13505 Outer membrane protein beta-barrel domain JJB98_19515 PF17755 UvrA DNA-binding domain JJB98_19515 PF00005 ABC transporter JJB98_19515 PF17760 UvrA interaction domain JJB98_19540 PF13419 Haloacid dehalogenase-like hydrolase JJB98_19555 PF00501 AMP-binding enzyme JJB98_19555 PF13193 AMP-binding enzyme C-terminal domain JJB98_19600 PF01134 Glucose inhibited division protein A JJB98_19610 PF00188 Cysteine-rich secretory protein family JJB98_19625 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_19630 PF13291 ACT domain JJB98_19630 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_19645 PF07549 SecD/SecF GG Motif JJB98_19645 PF02355 Protein export membrane protein JJB98_19650 PF07549 SecD/SecF GG Motif JJB98_19650 PF02355 Protein export membrane protein JJB98_19655 PF02699 Preprotein translocase subunit JJB98_19665 PF01551 Peptidase family M23 JJB98_19665 PF01476 LysM domain JJB98_19680 PF01975 Survival protein SurE JJB98_19690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJB98_19690 PF02403 Seryl-tRNA synthetase N-terminal domain JJB98_19695 PF00902 Sec-independent protein translocase protein (TatC) JJB98_19700 PF02416 mttA/Hcf106 family JJB98_19705 PF02416 mttA/Hcf106 family JJB98_19710 PF04079 Segregation and condensation complex subunit ScpB JJB98_19715 PF02616 Segregation and condensation protein ScpA JJB98_19720 PF00933 Glycosyl hydrolase family 3 N terminal domain JJB98_19730 PF00750 tRNA synthetases class I (R) JJB98_19730 PF03485 Arginyl tRNA synthetase N terminal domain JJB98_19730 PF05746 DALR anticodon binding domain JJB98_19735 PF13286 Phosphohydrolase-associated domain JJB98_19735 PF01966 HD domain JJB98_19740 PF01521 Iron-sulphur cluster biosynthesis JJB98_19750 PF00072 Response regulator receiver domain JJB98_19750 PF00989 PAS fold JJB98_19750 PF01627 Hpt domain JJB98_19750 PF18415 Histidine kinase receptor ArcB trans-membrane domain JJB98_19750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_19750 PF00512 His Kinase A (phospho-acceptor) domain JJB98_19755 PF03372 Endonuclease/Exonuclease/phosphatase family JJB98_19760 PF08238 Sel1 repeat JJB98_19765 PF00920 Dehydratase family JJB98_19785 PF00672 HAMP domain JJB98_19785 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_19790 PF14718 Soluble lytic murein transglycosylase L domain JJB98_19790 PF01464 Transglycosylase SLT domain JJB98_19800 PF00512 His Kinase A (phospho-acceptor) domain JJB98_19800 PF00989 PAS fold JJB98_19800 PF08447 PAS fold JJB98_19800 PF13493 Domain of unknown function (DUF4118) JJB98_19800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_19800 PF13426 PAS domain JJB98_19805 PF00196 Bacterial regulatory proteins, luxR family JJB98_19805 PF00072 Response regulator receiver domain JJB98_19810 PF00072 Response regulator receiver domain JJB98_19810 PF00196 Bacterial regulatory proteins, luxR family JJB98_19815 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_19820 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_19825 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_19825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJB98_19830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJB98_19830 PF00364 Biotin-requiring enzyme JJB98_19830 PF02817 e3 binding domain JJB98_19835 PF14437 MafB19-like deaminase JJB98_19845 PF02779 Transketolase, pyrimidine binding domain JJB98_19845 PF02780 Transketolase, C-terminal domain JJB98_19845 PF00364 Biotin-requiring enzyme JJB98_19850 PF00676 Dehydrogenase E1 component JJB98_19865 PF03358 NADPH-dependent FMN reductase JJB98_19875 PF00113 Enolase, C-terminal TIM barrel domain JJB98_19875 PF03952 Enolase, N-terminal domain JJB98_19885 PF14489 QueF-like protein JJB98_19910 PF00793 DAHP synthetase I family JJB98_19920 PF06418 CTP synthase N-terminus JJB98_19920 PF00117 Glutamine amidotransferase class-I JJB98_19930 PF00121 Triosephosphate isomerase JJB98_19940 PF13145 PPIC-type PPIASE domain JJB98_19945 PF00591 Glycosyl transferase family, a/b domain JJB98_19945 PF02885 Glycosyl transferase family, helical bundle domain JJB98_19950 PF00218 Indole-3-glycerol phosphate synthase JJB98_19955 PF01967 MoaC family JJB98_19965 PF01425 Amidase JJB98_19970 PF07690 Major Facilitator Superfamily JJB98_19975 PF00990 Diguanylate cyclase, GGDEF domain JJB98_19975 PF13188 PAS domain JJB98_19975 PF00563 EAL domain JJB98_19975 PF03707 Bacterial signalling protein N terminal repeat JJB98_19980 PF03572 Peptidase family S41 JJB98_19980 PF13180 PDZ domain JJB98_19985 PF01070 FMN-dependent dehydrogenase JJB98_19990 PF13419 Haloacid dehalogenase-like hydrolase JJB98_20000 PF00994 Probable molybdopterin binding domain JJB98_20000 PF03454 MoeA C-terminal region (domain IV) JJB98_20000 PF03453 MoeA N-terminal region (domain I and II) JJB98_20005 PF00717 Peptidase S24-like JJB98_20005 PF01726 LexA DNA binding domain JJB98_20030 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJB98_20030 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JJB98_20035 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJB98_20040 PF00285 Citrate synthase, C-terminal domain JJB98_20060 PF01547 Bacterial extracellular solute-binding protein JJB98_20065 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_20070 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_20075 PF00005 ABC transporter JJB98_20075 PF17912 MalK OB fold domain JJB98_20085 PF02684 Lipid-A-disaccharide synthetase JJB98_20095 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_20095 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JJB98_20100 PF07977 FabA-like domain JJB98_20105 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_20105 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JJB98_20110 PF01103 Surface antigen JJB98_20110 PF07244 Surface antigen variable number repeat JJB98_20115 PF02163 Peptidase family M50 JJB98_20115 PF17820 PDZ domain JJB98_20120 PF13288 DXP reductoisomerase C-terminal domain JJB98_20120 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JJB98_20120 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JJB98_20130 PF01255 Putative undecaprenyl diphosphate synthase JJB98_20135 PF01765 Ribosome recycling factor JJB98_20140 PF00696 Amino acid kinase family JJB98_20145 PF00889 Elongation factor TS JJB98_20150 PF00318 Ribosomal protein S2 JJB98_20165 PF07733 Bacterial DNA polymerase III alpha NTPase domain JJB98_20165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JJB98_20165 PF14579 Helix-hairpin-helix motif JJB98_20165 PF02811 PHP domain JJB98_20185 PF01565 FAD binding domain JJB98_20185 PF08031 Berberine and berberine like JJB98_20190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_20190 PF03466 LysR substrate binding domain JJB98_20200 PF00107 Zinc-binding dehydrogenase JJB98_20200 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_20205 PF00005 ABC transporter JJB98_20210 PF12704 MacB-like periplasmic core domain JJB98_20210 PF02687 FtsX-like permease family JJB98_20215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJB98_20215 PF03129 Anticodon binding domain JJB98_20235 PF00578 AhpC/TSA family JJB98_20245 PF07715 TonB-dependent Receptor Plug Domain JJB98_20245 PF00593 TonB dependent receptor JJB98_20265 PF00005 ABC transporter JJB98_20270 PF02653 Branched-chain amino acid transport system / permease component JJB98_20285 PF00072 Response regulator receiver domain JJB98_20285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_20285 PF00512 His Kinase A (phospho-acceptor) domain JJB98_20285 PF09456 RcsC Alpha-Beta-Loop (ABL) JJB98_20290 PF00196 Bacterial regulatory proteins, luxR family JJB98_20290 PF00072 Response regulator receiver domain JJB98_20300 PF00005 ABC transporter JJB98_20300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_20305 PF00005 ABC transporter JJB98_20305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_20310 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_20310 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_20315 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_20320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_20325 PF01636 Phosphotransferase enzyme family JJB98_20340 PF17770 Ribonuclease J C-terminal domain JJB98_20340 PF12706 Beta-lactamase superfamily domain JJB98_20340 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JJB98_20350 PF00361 Proton-conducting membrane transporter JJB98_20355 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus JJB98_20355 PF00361 Proton-conducting membrane transporter JJB98_20360 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JJB98_20360 PF00361 Proton-conducting membrane transporter JJB98_20365 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JJB98_20370 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JJB98_20375 PF12838 4Fe-4S dicluster domain JJB98_20380 PF00146 NADH dehydrogenase JJB98_20385 PF00384 Molybdopterin oxidoreductase JJB98_20385 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JJB98_20385 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JJB98_20390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJB98_20390 PF10531 SLBB domain JJB98_20390 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJB98_20410 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JJB98_20415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JJB98_20420 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JJB98_20425 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JJB98_20440 PF07715 TonB-dependent Receptor Plug Domain JJB98_20440 PF00593 TonB dependent receptor JJB98_20455 PF00216 Bacterial DNA-binding protein JJB98_20460 PF07687 Peptidase dimerisation domain JJB98_20460 PF01546 Peptidase family M20/M25/M40 JJB98_20480 PF02321 Outer membrane efflux protein JJB98_20485 PF00529 HlyD membrane-fusion protein of T1SS JJB98_20485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJB98_20490 PF00873 AcrB/AcrD/AcrF family JJB98_20495 PF01545 Cation efflux family JJB98_20500 PF01757 Acyltransferase family JJB98_20505 PF01209 ubiE/COQ5 methyltransferase family JJB98_20525 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_20525 PF05362 Lon protease (S16) C-terminal proteolytic domain JJB98_20525 PF02190 ATP-dependent protease La (LON) substrate-binding domain JJB98_20530 PF10431 C-terminal, D2-small domain, of ClpB protein JJB98_20530 PF06689 ClpX C4-type zinc finger JJB98_20530 PF07724 AAA domain (Cdc48 subfamily) JJB98_20535 PF00574 Clp protease JJB98_20540 PF05697 Bacterial trigger factor protein (TF) JJB98_20540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJB98_20540 PF05698 Bacterial trigger factor protein (TF) C-terminus JJB98_20550 PF00394 Multicopper oxidase JJB98_20550 PF07731 Multicopper oxidase JJB98_20550 PF07732 Multicopper oxidase JJB98_20555 PF01381 Helix-turn-helix JJB98_20560 PF05973 Phage derived protein Gp49-like (DUF891) JJB98_20570 PF03853 YjeF-related protein N-terminus JJB98_20570 PF01256 Carbohydrate kinase JJB98_20575 PF00543 Nitrogen regulatory protein P-II JJB98_20580 PF03951 Glutamine synthetase, beta-Grasp domain JJB98_20580 PF00120 Glutamine synthetase, catalytic domain JJB98_20585 PF16200 C-terminal region of band_7 JJB98_20585 PF01145 SPFH domain / Band 7 family JJB98_20600 PF07690 Major Facilitator Superfamily JJB98_20620 PF07722 Peptidase C26 JJB98_20630 PF01594 AI-2E family transporter JJB98_20645 PF00990 Diguanylate cyclase, GGDEF domain JJB98_20650 PF00380 Ribosomal protein S9/S16 JJB98_20655 PF00572 Ribosomal protein L13 JJB98_20665 PF00378 Enoyl-CoA hydratase/isomerase JJB98_20675 PF01053 Cys/Met metabolism PLP-dependent enzyme JJB98_20685 PF02628 Cytochrome oxidase assembly protein JJB98_20710 PF13439 Glycosyltransferase Family 4 JJB98_20710 PF00534 Glycosyl transferases group 1 JJB98_20715 PF02397 Bacterial sugar transferase JJB98_20725 PF01047 MarR family JJB98_20730 PF01494 FAD binding domain JJB98_20735 PF03435 Saccharopine dehydrogenase NADP binding domain JJB98_20750 PF03069 Acetamidase/Formamidase family JJB98_20765 PF02530 Porin subfamily JJB98_20780 PF00106 short chain dehydrogenase JJB98_20785 PF00701 Dihydrodipicolinate synthetase family JJB98_20795 PF00934 PE family JJB98_20795 PF07859 alpha/beta hydrolase fold JJB98_20820 PF13411 MerR HTH family regulatory protein JJB98_20825 PF00216 Bacterial DNA-binding protein JJB98_20830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJB98_20830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJB98_20835 PF02504 Fatty acid synthesis protein JJB98_20855 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_20860 PF03030 Inorganic H+ pyrophosphatase JJB98_20865 PF02769 AIR synthase related protein, C-terminal domain JJB98_20865 PF00586 AIR synthase related protein, N-terminal domain JJB98_20870 PF01029 NusB family JJB98_20875 PF00885 6,7-dimethyl-8-ribityllumazine synthase JJB98_20880 PF00677 Lumazine binding domain JJB98_20885 PF01872 RibD C-terminal domain JJB98_20885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JJB98_20890 PF03477 ATP cone domain JJB98_20895 PF00464 Serine hydroxymethyltransferase JJB98_20920 PF00490 Delta-aminolevulinic acid dehydratase JJB98_20940 PF04377 Arginine-tRNA-protein transferase, C terminus JJB98_20940 PF04376 Arginine-tRNA-protein transferase, N terminus JJB98_20945 PF01566 Natural resistance-associated macrophage protein JJB98_20975 PF09828 Chromate resistance exported protein JJB98_20980 PF02417 Chromate transporter JJB98_21000 PF00313 'Cold-shock' DNA-binding domain JJB98_21010 PF00521 DNA gyrase/topoisomerase IV, subunit A JJB98_21010 PF03989 DNA gyrase C-terminal domain, beta-propeller JJB98_21020 PF02565 Recombination protein O C terminal JJB98_21020 PF11967 Recombination protein O N terminal JJB98_21030 PF01926 50S ribosome-binding GTPase JJB98_21030 PF07650 KH domain JJB98_21035 PF14622 Ribonuclease-III-like JJB98_21035 PF00035 Double-stranded RNA binding motif JJB98_21040 PF10502 Signal peptidase, peptidase S26 JJB98_21045 PF01648 4'-phosphopantetheinyl transferase superfamily JJB98_21050 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JJB98_21055 PF13291 ACT domain JJB98_21055 PF04607 Region found in RelA / SpoT proteins JJB98_21055 PF02824 TGS domain JJB98_21060 PF01192 RNA polymerase Rpb6 JJB98_21080 PF01668 SmpB protein JJB98_21085 PF01741 Large-conductance mechanosensitive channel, MscL JJB98_21090 PF00701 Dihydrodipicolinate synthetase family JJB98_21095 PF01464 Transglycosylase SLT domain JJB98_21095 PF14718 Soluble lytic murein transglycosylase L domain JJB98_21110 PF02530 Porin subfamily JJB98_21130 PF02934 GatB/GatE catalytic domain JJB98_21130 PF02637 GatB domain JJB98_21140 PF01425 Amidase JJB98_21150 PF02686 Glu-tRNAGln amidotransferase C subunit JJB98_21155 PF03060 Nitronate monooxygenase JJB98_21160 PF03060 Nitronate monooxygenase JJB98_21165 PF03466 LysR substrate binding domain JJB98_21165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_21175 PF03652 Holliday junction resolvase JJB98_21195 PF18158 Adaptive response protein AidB N-terminal domain JJB98_21195 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_21195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_21200 PF01427 D-ala-D-ala dipeptidase JJB98_21205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJB98_21205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJB98_21210 PF01979 Amidohydrolase family JJB98_21215 PF02660 Glycerol-3-phosphate acyltransferase JJB98_21225 PF01425 Amidase JJB98_21230 PF17782 DprA winged helix domain JJB98_21230 PF02481 DNA recombination-mediator protein A JJB98_21245 PF01638 HxlR-like helix-turn-helix JJB98_21255 PF01396 Topoisomerase DNA binding C4 zinc finger JJB98_21255 PF13368 Topoisomerase C-terminal repeat JJB98_21255 PF01131 DNA topoisomerase JJB98_21255 PF01751 Toprim domain JJB98_21260 PF08461 Ribonuclease R winged-helix domain JJB98_21260 PF00773 RNB domain JJB98_21260 PF17876 Cold shock domain JJB98_21260 PF00575 S1 RNA binding domain JJB98_21260 PF08206 Ribonuclease B OB domain JJB98_21280 PF00296 Luciferase-like monooxygenase JJB98_21285 PF00471 Ribosomal protein L33 JJB98_21305 PF00072 Response regulator receiver domain JJB98_21305 PF00990 Diguanylate cyclase, GGDEF domain JJB98_21310 PF00072 Response regulator receiver domain JJB98_21320 PF00817 impB/mucB/samB family JJB98_21320 PF11799 impB/mucB/samB family C-terminal domain JJB98_21355 PF01230 HIT domain JJB98_21360 PF01980 tRNA-methyltransferase O JJB98_21380 PF13419 Haloacid dehalogenase-like hydrolase JJB98_21385 PF13816 Haem-containing dehydratase JJB98_21390 PF00795 Carbon-nitrogen hydrolase JJB98_21395 PF14525 AraC-binding-like domain JJB98_21405 PF07690 Major Facilitator Superfamily JJB98_21415 PF07724 AAA domain (Cdc48 subfamily) JJB98_21415 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_21415 PF10431 C-terminal, D2-small domain, of ClpB protein JJB98_21415 PF02861 Clp amino terminal domain, pathogenicity island component JJB98_21415 PF17871 AAA lid domain JJB98_21420 PF02617 ATP-dependent Clp protease adaptor protein ClpS JJB98_21440 PF07943 Penicillin-binding protein 5, C-terminal domain JJB98_21440 PF00768 D-alanyl-D-alanine carboxypeptidase JJB98_21460 PF13614 AAA domain JJB98_21465 PF02569 Pantoate-beta-alanine ligase JJB98_21485 PF13417 Glutathione S-transferase, N-terminal domain JJB98_21485 PF00043 Glutathione S-transferase, C-terminal domain JJB98_21500 PF00248 Aldo/keto reductase family JJB98_21510 PF01769 Divalent cation transporter JJB98_21510 PF00571 CBS domain JJB98_21510 PF03448 MgtE intracellular N domain JJB98_21515 PF01522 Polysaccharide deacetylase JJB98_21520 PF01522 Polysaccharide deacetylase JJB98_21520 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain JJB98_21555 PF00106 short chain dehydrogenase JJB98_21560 PF13823 Alcohol dehydrogenase GroES-associated JJB98_21560 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_21560 PF00107 Zinc-binding dehydrogenase JJB98_21570 PF00128 Alpha amylase, catalytic domain JJB98_21580 PF00857 Isochorismatase family JJB98_21590 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_21600 PF01266 FAD dependent oxidoreductase JJB98_21610 PF08402 TOBE domain JJB98_21610 PF00005 ABC transporter JJB98_21615 PF03466 LysR substrate binding domain JJB98_21615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_21630 PF12680 SnoaL-like domain JJB98_21630 PF08281 Sigma-70, region 4 JJB98_21630 PF04542 Sigma-70 region 2 JJB98_21645 PF00561 alpha/beta hydrolase fold JJB98_21655 PF07690 Major Facilitator Superfamily JJB98_21660 PF07690 Major Facilitator Superfamily JJB98_21675 PF01209 ubiE/COQ5 methyltransferase family JJB98_21685 PF00034 Cytochrome c JJB98_21690 PF00676 Dehydrogenase E1 component JJB98_21695 PF02779 Transketolase, pyrimidine binding domain JJB98_21695 PF02780 Transketolase, C-terminal domain JJB98_21700 PF02817 e3 binding domain JJB98_21700 PF00364 Biotin-requiring enzyme JJB98_21700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJB98_21710 PF03466 LysR substrate binding domain JJB98_21710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_21715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_21715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_21720 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_21730 PF00005 ABC transporter JJB98_21740 PF07517 SecA DEAD-like domain JJB98_21740 PF01043 SecA preprotein cross-linking domain JJB98_21785 PF06750 Bacterial Peptidase A24 N-terminal domain JJB98_21785 PF01478 Type IV leader peptidase family JJB98_21815 PF07963 Prokaryotic N-terminal methylation motif JJB98_21820 PF00114 Pilin (bacterial filament) JJB98_21820 PF07963 Prokaryotic N-terminal methylation motif JJB98_21825 PF08334 Type II secretion system (T2SS), protein G JJB98_21830 PF00482 Type II secretion system (T2SS), protein F JJB98_21835 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JJB98_21835 PF00437 Type II/IV secretion system protein JJB98_21840 PF00263 Bacterial type II and III secretion system protein JJB98_21840 PF03958 Bacterial type II/III secretion system short domain JJB98_21880 PF04955 HupE / UreJ protein JJB98_21910 PF03099 Biotin/lipoate A/B protein ligase family JJB98_21915 PF03796 DnaB-like helicase C terminal domain JJB98_21930 PF08448 PAS fold JJB98_21930 PF00072 Response regulator receiver domain JJB98_21930 PF13188 PAS domain JJB98_21930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_21930 PF00512 His Kinase A (phospho-acceptor) domain JJB98_21935 PF05598 Transposase domain (DUF772) JJB98_21940 PF00708 Acylphosphatase JJB98_21950 PF00364 Biotin-requiring enzyme JJB98_21950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_21950 PF18140 Propionyl-coenzyme A carboxylase BT domain JJB98_21950 PF00289 Biotin carboxylase, N-terminal domain JJB98_21950 PF02785 Biotin carboxylase C-terminal domain JJB98_21960 PF00072 Response regulator receiver domain JJB98_21960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_21960 PF13188 PAS domain JJB98_21960 PF00512 His Kinase A (phospho-acceptor) domain JJB98_21960 PF08448 PAS fold JJB98_21965 PF00892 EamA-like transporter family JJB98_21970 PF07690 Major Facilitator Superfamily JJB98_21975 PF03600 Citrate transporter JJB98_21990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JJB98_21990 PF13378 Enolase C-terminal domain-like JJB98_22000 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_22000 PF00107 Zinc-binding dehydrogenase JJB98_22010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_22010 PF05231 MASE1 JJB98_22010 PF07730 Histidine kinase JJB98_22015 PF00196 Bacterial regulatory proteins, luxR family JJB98_22015 PF00072 Response regulator receiver domain JJB98_22070 PF10417 C-terminal domain of 1-Cys peroxiredoxin JJB98_22070 PF00578 AhpC/TSA family JJB98_22075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_22075 PF08269 Cache domain JJB98_22105 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_22135 PF08448 PAS fold JJB98_22135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_22135 PF08447 PAS fold JJB98_22155 PF00106 short chain dehydrogenase JJB98_22160 PF01575 MaoC like domain JJB98_22185 PF00034 Cytochrome c JJB98_22185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_22190 PF03458 UPF0126 domain JJB98_22250 PF01039 Carboxyl transferase domain JJB98_22260 PF01312 FlhB HrpN YscU SpaS Family JJB98_22275 PF01479 S4 domain JJB98_22275 PF00849 RNA pseudouridylate synthase JJB98_22280 PF01381 Helix-turn-helix JJB98_22290 PF12002 MgsA AAA+ ATPase C terminal JJB98_22290 PF16193 AAA C-terminal domain JJB98_22290 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_22295 PF00595 PDZ domain JJB98_22295 PF13180 PDZ domain JJB98_22310 PF01638 HxlR-like helix-turn-helix JJB98_22315 PF00107 Zinc-binding dehydrogenase JJB98_22315 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_22320 PF00654 Voltage gated chloride channel JJB98_22330 PF00106 short chain dehydrogenase JJB98_22335 PF01196 Ribosomal protein L17 JJB98_22340 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JJB98_22340 PF01000 RNA polymerase Rpb3/RpoA insert domain JJB98_22340 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JJB98_22345 PF00411 Ribosomal protein S11 JJB98_22350 PF00416 Ribosomal protein S13/S18 JJB98_22360 PF00344 SecY translocase JJB98_22365 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JJB98_22370 PF00327 Ribosomal protein L30p/L7e JJB98_22375 PF03719 Ribosomal protein S5, C-terminal domain JJB98_22375 PF00333 Ribosomal protein S5, N-terminal domain JJB98_22380 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JJB98_22385 PF00347 Ribosomal protein L6 JJB98_22390 PF00410 Ribosomal protein S8 JJB98_22395 PF00253 Ribosomal protein S14p/S29e JJB98_22400 PF00673 ribosomal L5P family C-terminus JJB98_22400 PF00281 Ribosomal protein L5 JJB98_22405 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JJB98_22410 PF00238 Ribosomal protein L14p/L23e JJB98_22415 PF00366 Ribosomal protein S17 JJB98_22420 PF00831 Ribosomal L29 protein JJB98_22425 PF00252 Ribosomal protein L16p/L10e JJB98_22430 PF00189 Ribosomal protein S3, C-terminal domain JJB98_22430 PF07650 KH domain JJB98_22435 PF00237 Ribosomal protein L22p/L17e JJB98_22440 PF00203 Ribosomal protein S19 JJB98_22445 PF00181 Ribosomal Proteins L2, RNA binding domain JJB98_22445 PF03947 Ribosomal Proteins L2, C-terminal domain JJB98_22450 PF00276 Ribosomal protein L23 JJB98_22455 PF00573 Ribosomal protein L4/L1 family JJB98_22460 PF00297 Ribosomal protein L3 JJB98_22465 PF00338 Ribosomal protein S10p/S20e JJB98_22470 PF03143 Elongation factor Tu C-terminal domain JJB98_22470 PF03144 Elongation factor Tu domain 2 JJB98_22470 PF00009 Elongation factor Tu GTP binding domain JJB98_22475 PF14492 Elongation Factor G, domain II JJB98_22475 PF00679 Elongation factor G C-terminus JJB98_22475 PF03764 Elongation factor G, domain IV JJB98_22475 PF00009 Elongation factor Tu GTP binding domain JJB98_22475 PF03144 Elongation factor Tu domain 2 JJB98_22480 PF00177 Ribosomal protein S7p/S5e JJB98_22485 PF00164 Ribosomal protein S12/S23 JJB98_22495 PF00005 ABC transporter JJB98_22495 PF00664 ABC transporter transmembrane region JJB98_22500 PF01593 Flavin containing amine oxidoreductase JJB98_22500 PF02027 RolB/RolC glucosidase family JJB98_22505 PF05000 RNA polymerase Rpb1, domain 4 JJB98_22505 PF04983 RNA polymerase Rpb1, domain 3 JJB98_22505 PF04997 RNA polymerase Rpb1, domain 1 JJB98_22505 PF00623 RNA polymerase Rpb1, domain 2 JJB98_22505 PF04998 RNA polymerase Rpb1, domain 5 JJB98_22510 PF04560 RNA polymerase Rpb2, domain 7 JJB98_22510 PF00562 RNA polymerase Rpb2, domain 6 JJB98_22510 PF10385 RNA polymerase beta subunit external 1 domain JJB98_22510 PF04561 RNA polymerase Rpb2, domain 2 JJB98_22510 PF04565 RNA polymerase Rpb2, domain 3 JJB98_22510 PF04563 RNA polymerase beta subunit JJB98_22515 PF16320 Ribosomal protein L7/L12 dimerisation domain JJB98_22515 PF00542 Ribosomal protein L7/L12 C-terminal domain JJB98_22520 PF00466 Ribosomal protein L10 JJB98_22525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_22525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_22530 PF00687 Ribosomal protein L1p/L10e family JJB98_22535 PF00298 Ribosomal protein L11, RNA binding domain JJB98_22535 PF03946 Ribosomal protein L11, N-terminal domain JJB98_22540 PF02357 Transcription termination factor nusG JJB98_22540 PF00467 KOW motif JJB98_22545 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JJB98_22550 PF08421 Putative zinc binding domain JJB98_22550 PF08484 C-methyltransferase C-terminal domain JJB98_22560 PF13580 SIS domain JJB98_22565 PF01370 NAD dependent epimerase/dehydratase family JJB98_22570 PF01467 Cytidylyltransferase-like JJB98_22570 PF00294 pfkB family carbohydrate kinase JJB98_22575 PF01370 NAD dependent epimerase/dehydratase family JJB98_22590 PF00456 Transketolase, thiamine diphosphate binding domain JJB98_22595 PF02779 Transketolase, pyrimidine binding domain JJB98_22595 PF02780 Transketolase, C-terminal domain JJB98_22600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_22605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_22620 PF01209 ubiE/COQ5 methyltransferase family JJB98_22640 PF08421 Putative zinc binding domain JJB98_22640 PF08484 C-methyltransferase C-terminal domain JJB98_22650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJB98_22650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_22670 PF00535 Glycosyl transferase family 2 JJB98_22675 PF00535 Glycosyl transferase family 2 JJB98_22685 PF00144 Beta-lactamase JJB98_22690 PF00106 short chain dehydrogenase JJB98_22695 PF00300 Histidine phosphatase superfamily (branch 1) JJB98_22705 PF01546 Peptidase family M20/M25/M40 JJB98_22705 PF07687 Peptidase dimerisation domain JJB98_22720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_22720 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_22720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_22725 PF09209 Tetracyclin repressor-like, C-terminal domain JJB98_22725 PF00440 Bacterial regulatory proteins, tetR family JJB98_22740 PF02515 CoA-transferase family III JJB98_22760 PF07995 Glucose / Sorbosone dehydrogenase JJB98_22785 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_22795 PF03795 YCII-related domain JJB98_22805 PF00580 UvrD/REP helicase N-terminal domain JJB98_22805 PF13361 UvrD-like helicase C-terminal domain JJB98_22810 PF00588 SpoU rRNA Methylase family JJB98_22810 PF08032 RNA 2'-O ribose methyltransferase substrate binding JJB98_22860 PF03886 ABC-type transport auxiliary lipoprotein component JJB98_22860 PF02470 MlaD protein JJB98_22865 PF00005 ABC transporter JJB98_22870 PF02405 Permease MlaE JJB98_22885 PF00583 Acetyltransferase (GNAT) family JJB98_22885 PF13380 CoA binding domain JJB98_22885 PF13607 Succinyl-CoA ligase like flavodoxin domain JJB98_22895 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_22905 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JJB98_22905 PF00561 alpha/beta hydrolase fold JJB98_22910 PF00690 Cation transporter/ATPase, N-terminus JJB98_22910 PF00689 Cation transporting ATPase, C-terminus JJB98_22915 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JJB98_22940 PF01743 Poly A polymerase head domain JJB98_22940 PF00571 CBS domain JJB98_22950 PF01292 Prokaryotic cytochrome b561 JJB98_22955 PF04945 YHS domain JJB98_22970 PF02627 Carboxymuconolactone decarboxylase family JJB98_22975 PF00873 AcrB/AcrD/AcrF family JJB98_22985 PF01022 Bacterial regulatory protein, arsR family JJB98_22990 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_23025 PF04205 FMN-binding domain JJB98_23025 PF12801 4Fe-4S binding domain JJB98_23030 PF18764 Nitrous oxide reductase propeller repeat JJB98_23030 PF18793 Nitrous oxide reductase propeller repeat 2 JJB98_23030 PF13473 Cupredoxin-like domain JJB98_23035 PF05048 Periplasmic copper-binding protein (NosD) JJB98_23040 PF00005 ABC transporter JJB98_23045 PF12679 ABC-2 family transporter protein JJB98_23050 PF05573 NosL JJB98_23060 PF00034 Cytochrome c JJB98_23110 PF03631 Virulence factor BrkB JJB98_23175 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_23175 PF05362 Lon protease (S16) C-terminal proteolytic domain JJB98_23175 PF02190 ATP-dependent protease La (LON) substrate-binding domain JJB98_23180 PF00929 Exonuclease JJB98_23220 PF12833 Helix-turn-helix domain JJB98_23240 PF02735 Ku70/Ku80 beta-barrel domain JJB98_23255 PF00857 Isochorismatase family JJB98_23280 PF04314 Copper chaperone PCu(A)C JJB98_23285 PF03100 CcmE JJB98_23290 PF03653 Uncharacterised protein family (UPF0093) JJB98_23295 PF04055 Radical SAM superfamily JJB98_23305 PF00092 von Willebrand factor type A domain JJB98_23310 PF07728 AAA domain (dynein-related subfamily) JJB98_23310 PF08406 CbbQ/NirQ/NorQ C-terminal JJB98_23315 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_23320 PF00034 Cytochrome c JJB98_23330 PF00510 Cytochrome c oxidase subunit III JJB98_23370 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_23370 PF02190 ATP-dependent protease La (LON) substrate-binding domain JJB98_23370 PF05362 Lon protease (S16) C-terminal proteolytic domain JJB98_23375 PF01554 MatE JJB98_23380 PF01554 MatE JJB98_23385 PF07690 Major Facilitator Superfamily JJB98_23395 PF01047 MarR family JJB98_23450 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JJB98_23450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_23460 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_23465 PF00266 Aminotransferase class-V JJB98_23470 PF00392 Bacterial regulatory proteins, gntR family JJB98_23470 PF07729 FCD domain JJB98_23480 PF03824 High-affinity nickel-transport protein JJB98_23500 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJB98_23500 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJB98_23505 PF01297 Zinc-uptake complex component A periplasmic JJB98_23520 PF00665 Integrase core domain JJB98_23525 PF00171 Aldehyde dehydrogenase family JJB98_23545 PF04314 Copper chaperone PCu(A)C JJB98_23550 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JJB98_23550 PF12801 4Fe-4S binding domain JJB98_23550 PF13746 4Fe-4S dicluster domain JJB98_23555 PF01883 Iron-sulfur cluster assembly protein JJB98_23575 PF00127 Copper binding proteins, plastocyanin/azurin family JJB98_23580 PF13545 Crp-like helix-turn-helix domain JJB98_23580 PF00027 Cyclic nucleotide-binding domain JJB98_23590 PF00394 Multicopper oxidase JJB98_23590 PF07732 Multicopper oxidase JJB98_23600 PF04055 Radical SAM superfamily JJB98_23610 PF03597 Cytochrome oxidase maturation protein cbb3-type JJB98_23615 PF00403 Heavy-metal-associated domain JJB98_23625 PF13746 4Fe-4S dicluster domain JJB98_23625 PF12801 4Fe-4S binding domain JJB98_23625 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JJB98_23630 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JJB98_23630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_23645 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_23650 PF00571 CBS domain JJB98_23650 PF00478 IMP dehydrogenase / GMP reductase domain JJB98_23660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_23660 PF00512 His Kinase A (phospho-acceptor) domain JJB98_23660 PF00989 PAS fold JJB98_23665 PF00196 Bacterial regulatory proteins, luxR family JJB98_23665 PF00072 Response regulator receiver domain JJB98_23670 PF00072 Response regulator receiver domain JJB98_23675 PF00027 Cyclic nucleotide-binding domain JJB98_23675 PF13545 Crp-like helix-turn-helix domain JJB98_23680 PF00027 Cyclic nucleotide-binding domain JJB98_23680 PF00520 Ion transport protein JJB98_23685 PF13340 Putative transposase of IS4/5 family (DUF4096) JJB98_23695 PF17762 HTH domain found in ParB protein JJB98_23695 PF02195 ParB-like nuclease domain JJB98_23705 PF00717 Peptidase S24-like JJB98_23795 PF00144 Beta-lactamase JJB98_23805 PF01513 ATP-NAD kinase JJB98_23810 PF00072 Response regulator receiver domain JJB98_23830 PF01502 Phosphoribosyl-AMP cyclohydrolase JJB98_23835 PF01227 GTP cyclohydrolase I JJB98_23850 PF01809 Putative membrane protein insertion efficiency factor JJB98_23880 PF07690 Major Facilitator Superfamily JJB98_23885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJB98_23885 PF03129 Anticodon binding domain JJB98_23885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJB98_23885 PF02824 TGS domain JJB98_23895 PF00144 Beta-lactamase JJB98_23900 PF08448 PAS fold JJB98_23900 PF08447 PAS fold JJB98_23900 PF00990 Diguanylate cyclase, GGDEF domain JJB98_23900 PF00563 EAL domain JJB98_23915 PF01734 Patatin-like phospholipase JJB98_23920 PF00571 CBS domain JJB98_23950 PF03880 DbpA RNA binding domain JJB98_23950 PF00271 Helicase conserved C-terminal domain JJB98_23950 PF00270 DEAD/DEAH box helicase JJB98_23980 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_23980 PF00107 Zinc-binding dehydrogenase JJB98_24030 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_24080 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_24080 PF06426 Serine acetyltransferase, N-terminal JJB98_24090 PF12146 Serine aminopeptidase, S33 JJB98_24105 PF01494 FAD binding domain JJB98_24120 PF07690 Major Facilitator Superfamily JJB98_24125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_24130 PF07687 Peptidase dimerisation domain JJB98_24130 PF01546 Peptidase family M20/M25/M40 JJB98_24135 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_24140 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_24145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_24145 PF00005 ABC transporter JJB98_24155 PF01546 Peptidase family M20/M25/M40 JJB98_24155 PF07687 Peptidase dimerisation domain JJB98_24160 PF01425 Amidase JJB98_24165 PF00378 Enoyl-CoA hydratase/isomerase JJB98_24170 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_24170 PF14765 Polyketide synthase dehydratase JJB98_24170 PF00550 Phosphopantetheine attachment site JJB98_24170 PF08659 KR domain JJB98_24170 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_24170 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_24170 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_24170 PF00698 Acyl transferase domain JJB98_24175 PF01323 DSBA-like thioredoxin domain JJB98_24190 PF00156 Phosphoribosyl transferase domain JJB98_24195 PF00994 Probable molybdopterin binding domain JJB98_24195 PF18146 Damage-inducible protein CinA KH domain JJB98_24195 PF02464 Competence-damaged protein JJB98_24205 PF14403 Circularly permuted ATP-grasp type 2 JJB98_24210 PF14403 Circularly permuted ATP-grasp type 2 JJB98_24210 PF04168 A predicted alpha-helical domain with a conserved ER motif. JJB98_24215 PF01841 Transglutaminase-like superfamily JJB98_24215 PF08379 Bacterial transglutaminase-like N-terminal region JJB98_24225 PF00106 short chain dehydrogenase JJB98_24230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJB98_24230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJB98_24235 PF00106 short chain dehydrogenase JJB98_24240 PF02653 Branched-chain amino acid transport system / permease component JJB98_24245 PF00005 ABC transporter JJB98_24255 PF12833 Helix-turn-helix domain JJB98_24265 PF07670 Nucleoside recognition JJB98_24265 PF07662 Na+ dependent nucleoside transporter C-terminus JJB98_24265 PF01773 Na+ dependent nucleoside transporter N-terminus JJB98_24275 PF06233 Usg-like family JJB98_24280 PF00166 Chaperonin 10 Kd subunit JJB98_24285 PF00118 TCP-1/cpn60 chaperonin family JJB98_24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_24290 PF03466 LysR substrate binding domain JJB98_24300 PF02798 Glutathione S-transferase, N-terminal domain JJB98_24315 PF00795 Carbon-nitrogen hydrolase JJB98_24315 PF00535 Glycosyl transferase family 2 JJB98_24340 PF02567 Phenazine biosynthesis-like protein JJB98_24345 PF00072 Response regulator receiver domain JJB98_24345 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_24355 PF00005 ABC transporter JJB98_24365 PF00440 Bacterial regulatory proteins, tetR family JJB98_24365 PF08361 MAATS-type transcriptional repressor, C-terminal region JJB98_24370 PF01022 Bacterial regulatory protein, arsR family JJB98_24395 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_24395 PF12804 MobA-like NTP transferase domain JJB98_24400 PF13478 XdhC Rossmann domain JJB98_24400 PF02625 XdhC and CoxI family JJB98_24420 PF03450 CO dehydrogenase flavoprotein C-terminal domain JJB98_24420 PF00941 FAD binding domain in molybdopterin dehydrogenase JJB98_24425 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_24425 PF01799 [2Fe-2S] binding domain JJB98_24435 PF10397 Adenylosuccinate lyase C-terminus JJB98_24435 PF00206 Lyase JJB98_24440 PF12146 Serine aminopeptidase, S33 JJB98_24445 PF02627 Carboxymuconolactone decarboxylase family JJB98_24460 PF02653 Branched-chain amino acid transport system / permease component JJB98_24465 PF02653 Branched-chain amino acid transport system / permease component JJB98_24465 PF11862 Domain of unknown function (DUF3382) JJB98_24470 PF00005 ABC transporter JJB98_24470 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_24475 PF00005 ABC transporter JJB98_24480 PF13458 Periplasmic binding protein JJB98_24485 PF00072 Response regulator receiver domain JJB98_24490 PF00072 Response regulator receiver domain JJB98_24490 PF13426 PAS domain JJB98_24490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_24495 PF03576 Peptidase family S58 JJB98_24510 PF00834 Ribulose-phosphate 3 epimerase family JJB98_24525 PF00069 Protein kinase domain JJB98_24525 PF03793 PASTA domain JJB98_24550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_24550 PF07730 Histidine kinase JJB98_24550 PF05231 MASE1 JJB98_24555 PF00196 Bacterial regulatory proteins, luxR family JJB98_24555 PF00072 Response regulator receiver domain JJB98_24565 PF00440 Bacterial regulatory proteins, tetR family JJB98_24570 PF00206 Lyase JJB98_24570 PF10397 Adenylosuccinate lyase C-terminus JJB98_24575 PF07687 Peptidase dimerisation domain JJB98_24575 PF01546 Peptidase family M20/M25/M40 JJB98_24580 PF00501 AMP-binding enzyme JJB98_24580 PF13193 AMP-binding enzyme C-terminal domain JJB98_24595 PF01177 Asp/Glu/Hydantoin racemase JJB98_24610 PF01479 S4 domain JJB98_24610 PF00163 Ribosomal protein S4/S9 N-terminal domain JJB98_24615 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JJB98_24620 PF01212 Beta-eliminating lyase JJB98_24625 PF00144 Beta-lactamase JJB98_24630 PF00144 Beta-lactamase JJB98_24635 PF01661 Macro domain JJB98_24640 PF00462 Glutaredoxin JJB98_24645 PF03781 Sulfatase-modifying factor enzyme 1 JJB98_24645 PF12867 DinB superfamily JJB98_24650 PF10017 Histidine-specific methyltransferase, SAM-dependent JJB98_24655 PF06772 Bacterial low temperature requirement A protein (LtrA) JJB98_24680 PF00586 AIR synthase related protein, N-terminal domain JJB98_24680 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JJB98_24680 PF02769 AIR synthase related protein, C-terminal domain JJB98_24700 PF01544 CorA-like Mg2+ transporter protein JJB98_24705 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JJB98_24710 PF01259 SAICAR synthetase JJB98_24725 PF02560 Cyanate lyase C-terminal domain JJB98_24735 PF00588 SpoU rRNA Methylase family JJB98_24740 PF00180 Isocitrate/isopropylmalate dehydrogenase JJB98_24745 PF02272 DHHA1 domain JJB98_24745 PF01411 tRNA synthetases class II (A) JJB98_24745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJB98_24750 PF08669 Glycine cleavage T-protein C-terminal barrel domain JJB98_24750 PF01571 Aminomethyltransferase folate-binding domain JJB98_24755 PF01597 Glycine cleavage H-protein JJB98_24760 PF02347 Glycine cleavage system P-protein JJB98_24770 PF00154 recA bacterial DNA recombination protein JJB98_24885 PF03055 Retinal pigment epithelial membrane protein JJB98_24900 PF04279 Intracellular septation protein A JJB98_24910 PF05683 Fumarase C-terminus JJB98_24910 PF05681 Fumarate hydratase (Fumerase) JJB98_24940 PF08448 PAS fold JJB98_24940 PF00512 His Kinase A (phospho-acceptor) domain JJB98_24940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_24940 PF00072 Response regulator receiver domain JJB98_24940 PF13188 PAS domain JJB98_24945 PF01312 FlhB HrpN YscU SpaS Family JJB98_24950 PF01311 Bacterial export proteins, family 1 JJB98_24955 PF01313 Bacterial export proteins, family 3 JJB98_24960 PF02049 Flagellar hook-basal body complex protein FliE JJB98_24965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJB98_24980 PF00813 FliP family JJB98_25005 PF02154 Flagellar motor switch protein FliM JJB98_25005 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JJB98_25010 PF03748 Flagellar basal body-associated protein FliL JJB98_25015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJB98_25015 PF00460 Flagella basal body rod protein JJB98_25020 PF00460 Flagella basal body rod protein JJB98_25020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJB98_25030 PF02107 Flagellar L-ring protein JJB98_25040 PF01258 Prokaryotic dksA/traR C4-type zinc finger JJB98_25045 PF13460 NAD(P)H-binding JJB98_25050 PF01638 HxlR-like helix-turn-helix JJB98_25055 PF10768 Class II flagellar assembly regulator JJB98_25060 PF02119 Flagellar P-ring protein JJB98_25080 PF07309 Flagellar protein FlaF JJB98_25085 PF00700 Bacterial flagellin C-terminal helical region JJB98_25085 PF00669 Bacterial flagellin N-terminal helical region JJB98_25090 PF00700 Bacterial flagellin C-terminal helical region JJB98_25090 PF00669 Bacterial flagellin N-terminal helical region JJB98_25095 PF00700 Bacterial flagellin C-terminal helical region JJB98_25095 PF00669 Bacterial flagellin N-terminal helical region JJB98_25100 PF00669 Bacterial flagellin N-terminal helical region JJB98_25100 PF00700 Bacterial flagellin C-terminal helical region JJB98_25105 PF07378 Flagellar protein FlbT JJB98_25110 PF00282 Pyridoxal-dependent decarboxylase conserved domain JJB98_25130 PF00460 Flagella basal body rod protein JJB98_25130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJB98_25135 PF07196 Flagellin hook IN motif JJB98_25135 PF00460 Flagella basal body rod protein JJB98_25135 PF07559 Flagellar basal body protein FlaE JJB98_25135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJB98_25140 PF01641 SelR domain JJB98_25145 PF01266 FAD dependent oxidoreductase JJB98_25155 PF00582 Universal stress protein family JJB98_25165 PF00155 Aminotransferase class I and II JJB98_25165 PF00392 Bacterial regulatory proteins, gntR family JJB98_25185 PF00563 EAL domain JJB98_25185 PF00990 Diguanylate cyclase, GGDEF domain JJB98_25185 PF03707 Bacterial signalling protein N terminal repeat JJB98_25185 PF13188 PAS domain JJB98_25195 PF05974 Domain of unknown function (DUF892) JJB98_25210 PF07690 Major Facilitator Superfamily JJB98_25215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_25215 PF03466 LysR substrate binding domain JJB98_25220 PF00701 Dihydrodipicolinate synthetase family JJB98_25225 PF13378 Enolase C-terminal domain-like JJB98_25230 PF00171 Aldehyde dehydrogenase family JJB98_25235 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JJB98_25235 PF08666 SAF domain JJB98_25250 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_25260 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_25275 PF01541 GIY-YIG catalytic domain JJB98_25280 PF02470 MlaD protein JJB98_25280 PF03886 ABC-type transport auxiliary lipoprotein component JJB98_25285 PF00005 ABC transporter JJB98_25290 PF02405 Permease MlaE JJB98_25295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JJB98_25295 PF13378 Enolase C-terminal domain-like JJB98_25300 PF12832 MFS_1 like family JJB98_25320 PF05025 RbsD / FucU transport protein family JJB98_25330 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_25335 PF00534 Glycosyl transferases group 1 JJB98_25335 PF13439 Glycosyltransferase Family 4 JJB98_25345 PF08543 Phosphomethylpyrimidine kinase JJB98_25350 PF00072 Response regulator receiver domain JJB98_25350 PF13426 PAS domain JJB98_25350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_25360 PF00034 Cytochrome c JJB98_25370 PF01053 Cys/Met metabolism PLP-dependent enzyme JJB98_25375 PF01322 Cytochrome C' JJB98_25380 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_25380 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_25395 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_25400 PF03023 Lipid II flippase MurJ JJB98_25405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_25410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJB98_25410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_25415 PF00483 Nucleotidyl transferase JJB98_25415 PF01050 Mannose-6-phosphate isomerase JJB98_25420 PF01370 NAD dependent epimerase/dehydratase family JJB98_25430 PF00953 Glycosyl transferase family 4 JJB98_25435 PF01370 NAD dependent epimerase/dehydratase family JJB98_25440 PF02719 Polysaccharide biosynthesis protein JJB98_25450 PF01467 Cytidylyltransferase-like JJB98_25450 PF00294 pfkB family carbohydrate kinase JJB98_25455 PF01370 NAD dependent epimerase/dehydratase family JJB98_25460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJB98_25465 PF00534 Glycosyl transferases group 1 JJB98_25470 PF01370 NAD dependent epimerase/dehydratase family JJB98_25475 PF00005 ABC transporter JJB98_25475 PF00664 ABC transporter transmembrane region JJB98_25480 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_25500 PF00743 Flavin-binding monooxygenase-like JJB98_25505 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JJB98_25505 PF05221 S-adenosyl-L-homocysteine hydrolase JJB98_25510 PF00438 S-adenosylmethionine synthetase, N-terminal domain JJB98_25510 PF02772 S-adenosylmethionine synthetase, central domain JJB98_25510 PF02773 S-adenosylmethionine synthetase, C-terminal domain JJB98_25530 PF01717 Cobalamin-independent synthase, Catalytic domain JJB98_25535 PF00005 ABC transporter JJB98_25540 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_25540 PF00005 ABC transporter JJB98_25555 PF13458 Periplasmic binding protein JJB98_25565 PF00551 Formyl transferase JJB98_25580 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_25580 PF00072 Response regulator receiver domain JJB98_25595 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_25595 PF00005 ABC transporter JJB98_25600 PF00501 AMP-binding enzyme JJB98_25600 PF13193 AMP-binding enzyme C-terminal domain JJB98_25605 PF02653 Branched-chain amino acid transport system / permease component JJB98_25620 PF00005 ABC transporter JJB98_25630 PF00501 AMP-binding enzyme JJB98_25630 PF14535 AMP-binding enzyme C-terminal domain JJB98_25635 PF00288 GHMP kinases N terminal domain JJB98_25635 PF08544 GHMP kinases C terminal JJB98_25640 PF03102 NeuB family JJB98_25640 PF08666 SAF domain JJB98_25645 PF02348 Cytidylyltransferase JJB98_25680 PF01370 NAD dependent epimerase/dehydratase family JJB98_25685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_25690 PF02350 UDP-N-acetylglucosamine 2-epimerase JJB98_25695 PF08666 SAF domain JJB98_25695 PF03102 NeuB family JJB98_25705 PF00483 Nucleotidyl transferase JJB98_25715 PF02348 Cytidylyltransferase JJB98_25720 PF00106 short chain dehydrogenase JJB98_25745 PF00535 Glycosyl transferase family 2 JJB98_25750 PF00535 Glycosyl transferase family 2 JJB98_25755 PF01370 NAD dependent epimerase/dehydratase family JJB98_25760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_25760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_25760 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_25765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_25770 PF16363 GDP-mannose 4,6 dehydratase JJB98_25775 PF00483 Nucleotidyl transferase JJB98_25785 PF01370 NAD dependent epimerase/dehydratase family JJB98_25800 PF02515 CoA-transferase family III JJB98_25805 PF01970 Tripartite tricarboxylate transporter TctA family JJB98_25820 PF00378 Enoyl-CoA hydratase/isomerase JJB98_25825 PF00266 Aminotransferase class-V JJB98_25830 PF13183 4Fe-4S dicluster domain JJB98_25830 PF01565 FAD binding domain JJB98_25830 PF02913 FAD linked oxidases, C-terminal domain JJB98_25840 PF00378 Enoyl-CoA hydratase/isomerase JJB98_25845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJB98_25845 PF00384 Molybdopterin oxidoreductase JJB98_25845 PF01568 Molydopterin dinucleotide binding domain JJB98_25850 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_25855 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_25855 PF01799 [2Fe-2S] binding domain JJB98_25860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_25860 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_25860 PF00034 Cytochrome c JJB98_25875 PF07729 FCD domain JJB98_25875 PF00392 Bacterial regulatory proteins, gntR family JJB98_25880 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_25890 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_25900 PF13545 Crp-like helix-turn-helix domain JJB98_25900 PF00027 Cyclic nucleotide-binding domain JJB98_25905 PF00583 Acetyltransferase (GNAT) family JJB98_25905 PF13607 Succinyl-CoA ligase like flavodoxin domain JJB98_25905 PF13380 CoA binding domain JJB98_25915 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_25930 PF01042 Endoribonuclease L-PSP JJB98_25935 PF00501 AMP-binding enzyme JJB98_25935 PF13193 AMP-binding enzyme C-terminal domain JJB98_25950 PF07883 Cupin domain JJB98_25955 PF01494 FAD binding domain JJB98_25960 PF01494 FAD binding domain JJB98_25965 PF00378 Enoyl-CoA hydratase/isomerase JJB98_25975 PF00561 alpha/beta hydrolase fold JJB98_25980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_25980 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_25980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_25985 PF13193 AMP-binding enzyme C-terminal domain JJB98_25985 PF00501 AMP-binding enzyme JJB98_25995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_25995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_26005 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_26010 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_26015 PF00005 ABC transporter JJB98_26020 PF00920 Dehydratase family JJB98_26030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_26030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_26035 PF01613 Flavin reductase like domain JJB98_26040 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JJB98_26045 PF02515 CoA-transferase family III JJB98_26120 PF00583 Acetyltransferase (GNAT) family JJB98_26150 PF01566 Natural resistance-associated macrophage protein JJB98_26160 PF00196 Bacterial regulatory proteins, luxR family JJB98_26160 PF00072 Response regulator receiver domain JJB98_26185 PF00491 Arginase family JJB98_26230 PF00107 Zinc-binding dehydrogenase JJB98_26230 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_26240 PF10431 C-terminal, D2-small domain, of ClpB protein JJB98_26240 PF02861 Clp amino terminal domain, pathogenicity island component JJB98_26240 PF17871 AAA lid domain JJB98_26240 PF07724 AAA domain (Cdc48 subfamily) JJB98_26240 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_26265 PF07687 Peptidase dimerisation domain JJB98_26265 PF01546 Peptidase family M20/M25/M40 JJB98_26275 PF00005 ABC transporter JJB98_26280 PF02653 Branched-chain amino acid transport system / permease component JJB98_26285 PF02653 Branched-chain amino acid transport system / permease component JJB98_26290 PF02608 ABC transporter substrate-binding protein PnrA-like JJB98_26295 PF01979 Amidohydrolase family JJB98_26305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_26305 PF01799 [2Fe-2S] binding domain JJB98_26305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_26310 PF00576 HIUase/Transthyretin family JJB98_26335 PF00596 Class II Aldolase and Adducin N-terminal domain JJB98_26340 PF01914 MarC family integral membrane protein JJB98_26355 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_26355 PF05362 Lon protease (S16) C-terminal proteolytic domain JJB98_26355 PF02190 ATP-dependent protease La (LON) substrate-binding domain JJB98_26365 PF00216 Bacterial DNA-binding protein JJB98_26370 PF02803 Thiolase, C-terminal domain JJB98_26370 PF00108 Thiolase, N-terminal domain JJB98_26375 PF00232 Glycosyl hydrolase family 1 JJB98_26385 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_26390 PF00891 O-methyltransferase domain JJB98_26410 PF00593 TonB dependent receptor JJB98_26410 PF07715 TonB-dependent Receptor Plug Domain JJB98_26415 PF05231 MASE1 JJB98_26415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_26415 PF07730 Histidine kinase JJB98_26420 PF00072 Response regulator receiver domain JJB98_26420 PF00196 Bacterial regulatory proteins, luxR family JJB98_26425 PF00756 Putative esterase JJB98_26445 PF00005 ABC transporter JJB98_26500 PF00005 ABC transporter JJB98_26525 PF00873 AcrB/AcrD/AcrF family JJB98_26530 PF08042 PqqA family JJB98_26540 PF13360 PQQ-like domain JJB98_26540 PF01011 PQQ enzyme repeat JJB98_26560 PF13360 PQQ-like domain JJB98_26570 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_26570 PF00107 Zinc-binding dehydrogenase JJB98_26575 PF04828 Glutathione-dependent formaldehyde-activating enzyme JJB98_26580 PF01799 [2Fe-2S] binding domain JJB98_26580 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_26585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_26595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_26595 PF13360 PQQ-like domain JJB98_26600 PF00355 Rieske [2Fe-2S] domain JJB98_26610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_26610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_26615 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_26620 PF12849 PBP superfamily domain JJB98_26630 PF01175 Urocanase Rossmann-like domain JJB98_26630 PF17392 Urocanase C-terminal domain JJB98_26630 PF17391 Urocanase N-terminal domain JJB98_26635 PF00221 Aromatic amino acid lyase JJB98_26640 PF07969 Amidohydrolase family JJB98_26650 PF07702 UTRA domain JJB98_26650 PF00392 Bacterial regulatory proteins, gntR family JJB98_26660 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_26665 PF00005 ABC transporter JJB98_26675 PF07690 Major Facilitator Superfamily JJB98_26685 PF01625 Peptide methionine sulfoxide reductase JJB98_26690 PF01568 Molydopterin dinucleotide binding domain JJB98_26690 PF00384 Molybdopterin oxidoreductase JJB98_26735 PF00175 Oxidoreductase NAD-binding domain JJB98_26735 PF00042 Globin JJB98_26735 PF00970 Oxidoreductase FAD-binding domain JJB98_26765 PF13247 4Fe-4S dicluster domain JJB98_26770 PF12838 4Fe-4S dicluster domain JJB98_26770 PF01568 Molydopterin dinucleotide binding domain JJB98_26770 PF00384 Molybdopterin oxidoreductase JJB98_26770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJB98_26770 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JJB98_26830 PF00072 Response regulator receiver domain JJB98_26830 PF00196 Bacterial regulatory proteins, luxR family JJB98_26835 PF00816 H-NS histone family JJB98_26855 PF02911 Formyl transferase, C-terminal domain JJB98_26855 PF01370 NAD dependent epimerase/dehydratase family JJB98_26855 PF00551 Formyl transferase JJB98_26860 PF00529 HlyD membrane-fusion protein of T1SS JJB98_26860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJB98_26865 PF00664 ABC transporter transmembrane region JJB98_26865 PF00005 ABC transporter JJB98_26890 PF00535 Glycosyl transferase family 2 JJB98_26905 PF13439 Glycosyltransferase Family 4 JJB98_26910 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_26915 PF16363 GDP-mannose 4,6 dehydratase JJB98_26920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJB98_26925 PF00132 Bacterial transferase hexapeptide (six repeats) JJB98_26925 PF06426 Serine acetyltransferase, N-terminal JJB98_26930 PF01943 Polysaccharide biosynthesis protein JJB98_26935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJB98_26935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_26940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JJB98_26940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JJB98_26940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JJB98_26945 PF02350 UDP-N-acetylglucosamine 2-epimerase JJB98_26955 PF00535 Glycosyl transferase family 2 JJB98_26955 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 JJB98_26970 PF00664 ABC transporter transmembrane region JJB98_26970 PF00005 ABC transporter JJB98_26970 PF03412 Peptidase C39 family JJB98_26985 PF00483 Nucleotidyl transferase JJB98_26990 PF04321 RmlD substrate binding domain JJB98_26995 PF16363 GDP-mannose 4,6 dehydratase JJB98_27000 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JJB98_27005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JJB98_27005 PF02706 Chain length determinant protein JJB98_27005 PF13807 G-rich domain on putative tyrosine kinase JJB98_27015 PF02397 Bacterial sugar transferase JJB98_27020 PF00816 H-NS histone family JJB98_27025 PF00816 H-NS histone family JJB98_27035 PF02603 HPr Serine kinase N terminus JJB98_27035 PF07475 HPr Serine kinase C-terminal domain JJB98_27085 PF01658 Myo-inositol-1-phosphate synthase JJB98_27090 PF00300 Histidine phosphatase superfamily (branch 1) JJB98_27115 PF01676 Metalloenzyme superfamily JJB98_27120 PF16363 GDP-mannose 4,6 dehydratase JJB98_27125 PF16363 GDP-mannose 4,6 dehydratase JJB98_27135 PF13439 Glycosyltransferase Family 4 JJB98_27155 PF16363 GDP-mannose 4,6 dehydratase JJB98_27160 PF00795 Carbon-nitrogen hydrolase JJB98_27170 PF03069 Acetamidase/Formamidase family JJB98_27175 PF00005 ABC transporter JJB98_27180 PF00005 ABC transporter JJB98_27195 PF13458 Periplasmic binding protein JJB98_27200 PF00989 PAS fold JJB98_27200 PF01627 Hpt domain JJB98_27200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_27200 PF00512 His Kinase A (phospho-acceptor) domain JJB98_27200 PF00072 Response regulator receiver domain JJB98_27200 PF18415 Histidine kinase receptor ArcB trans-membrane domain JJB98_27205 PF00486 Transcriptional regulatory protein, C terminal JJB98_27205 PF00072 Response regulator receiver domain JJB98_27220 PF13407 Periplasmic binding protein domain JJB98_27225 PF02653 Branched-chain amino acid transport system / permease component JJB98_27230 PF00005 ABC transporter JJB98_27235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJB98_27235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJB98_27245 PF00356 Bacterial regulatory proteins, lacI family JJB98_27255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_27255 PF00005 ABC transporter JJB98_27260 PF00106 short chain dehydrogenase JJB98_27260 PF00300 Histidine phosphatase superfamily (branch 1) JJB98_27270 PF04324 BFD-like [2Fe-2S] binding domain JJB98_27270 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_27275 PF01266 FAD dependent oxidoreductase JJB98_27280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_27285 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_27290 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_27290 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_27295 PF00005 ABC transporter JJB98_27295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_27300 PF03401 Tripartite tricarboxylate transporter family receptor JJB98_27330 PF00440 Bacterial regulatory proteins, tetR family JJB98_27340 PF00465 Iron-containing alcohol dehydrogenase JJB98_27345 PF00561 alpha/beta hydrolase fold JJB98_27365 PF00106 short chain dehydrogenase JJB98_27370 PF03060 Nitronate monooxygenase JJB98_27375 PF00108 Thiolase, N-terminal domain JJB98_27375 PF02803 Thiolase, C-terminal domain JJB98_27380 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_27380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_27380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_27385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_27385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_27385 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_27395 PF00106 short chain dehydrogenase JJB98_27405 PF02515 CoA-transferase family III JJB98_27415 PF01638 HxlR-like helix-turn-helix JJB98_27420 PF00501 AMP-binding enzyme JJB98_27425 PF13458 Periplasmic binding protein JJB98_27450 PF00723 Glycosyl hydrolases family 15 JJB98_27460 PF01226 Formate/nitrite transporter JJB98_27470 PF03006 Haemolysin-III related JJB98_27480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_27480 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_27480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_27500 PF01594 AI-2E family transporter JJB98_27510 PF01594 AI-2E family transporter JJB98_27540 PF00723 Glycosyl hydrolases family 15 JJB98_27545 PF00106 short chain dehydrogenase JJB98_27560 PF05199 GMC oxidoreductase JJB98_27560 PF00732 GMC oxidoreductase JJB98_27565 PF07690 Major Facilitator Superfamily JJB98_27580 PF00510 Cytochrome c oxidase subunit III JJB98_27585 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_27590 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJB98_27590 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JJB98_27625 PF13247 4Fe-4S dicluster domain JJB98_27625 PF00037 4Fe-4S binding domain JJB98_27630 PF02085 Class III cytochrome C family JJB98_27635 PF01070 FMN-dependent dehydrogenase JJB98_27645 PF13183 4Fe-4S dicluster domain JJB98_27645 PF01565 FAD binding domain JJB98_27645 PF02913 FAD linked oxidases, C-terminal domain JJB98_27650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_27650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_27650 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_27660 PF00067 Cytochrome P450 JJB98_27665 PF03631 Virulence factor BrkB JJB98_27670 PF04794 YdjC-like protein JJB98_27710 PF00005 ABC transporter JJB98_27715 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJB98_27715 PF00005 ABC transporter JJB98_27720 PF11862 Domain of unknown function (DUF3382) JJB98_27720 PF02653 Branched-chain amino acid transport system / permease component JJB98_27725 PF02653 Branched-chain amino acid transport system / permease component JJB98_27730 PF13458 Periplasmic binding protein JJB98_27735 PF00873 AcrB/AcrD/AcrF family JJB98_27740 PF13533 Biotin-lipoyl like JJB98_27750 PF00355 Rieske [2Fe-2S] domain JJB98_27750 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JJB98_27770 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_27800 PF03824 High-affinity nickel-transport protein JJB98_27820 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJB98_27820 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJB98_27825 PF01297 Zinc-uptake complex component A periplasmic JJB98_27870 PF00005 ABC transporter JJB98_27880 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_27890 PF00557 Metallopeptidase family M24 JJB98_27890 PF01321 Creatinase/Prolidase N-terminal domain JJB98_27895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_27895 PF03466 LysR substrate binding domain JJB98_27900 PF02515 CoA-transferase family III JJB98_27905 PF05034 Methylaspartate ammonia-lyase N-terminus JJB98_27905 PF07476 Methylaspartate ammonia-lyase C-terminus JJB98_27910 PF00171 Aldehyde dehydrogenase family JJB98_27915 PF00202 Aminotransferase class-III JJB98_27920 PF01037 Lrp/AsnC ligand binding domain JJB98_27925 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJB98_27925 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJB98_27935 PF00202 Aminotransferase class-III JJB98_27940 PF00171 Aldehyde dehydrogenase family JJB98_27945 PF01037 Lrp/AsnC ligand binding domain JJB98_27950 PF01321 Creatinase/Prolidase N-terminal domain JJB98_27950 PF00557 Metallopeptidase family M24 JJB98_27955 PF01546 Peptidase family M20/M25/M40 JJB98_27955 PF07687 Peptidase dimerisation domain JJB98_27965 PF08402 TOBE domain JJB98_27965 PF00005 ABC transporter JJB98_27970 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_27975 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_27990 PF05977 Transmembrane secretion effector JJB98_28050 PF08450 SMP-30/Gluconolactonase/LRE-like region JJB98_28060 PF02515 CoA-transferase family III JJB98_28070 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_28075 PF00005 ABC transporter JJB98_28125 PF00175 Oxidoreductase NAD-binding domain JJB98_28125 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_28130 PF00355 Rieske [2Fe-2S] domain JJB98_28150 PF13657 HipA N-terminal domain JJB98_28150 PF07804 HipA-like C-terminal domain JJB98_28155 PF01381 Helix-turn-helix JJB98_28175 PF00704 Glycosyl hydrolases family 18 JJB98_28175 PF00041 Fibronectin type III domain JJB98_28185 PF00166 Chaperonin 10 Kd subunit JJB98_28190 PF00118 TCP-1/cpn60 chaperonin family JJB98_28195 PF01266 FAD dependent oxidoreductase JJB98_28210 PF07804 HipA-like C-terminal domain JJB98_28210 PF13657 HipA N-terminal domain JJB98_28215 PF02675 S-adenosylmethionine decarboxylase JJB98_28220 PF00873 AcrB/AcrD/AcrF family JJB98_28225 PF01380 SIS domain JJB98_28235 PF02801 Beta-ketoacyl synthase, C-terminal domain JJB98_28235 PF00109 Beta-ketoacyl synthase, N-terminal domain JJB98_28235 PF00550 Phosphopantetheine attachment site JJB98_28235 PF14765 Polyketide synthase dehydratase JJB98_28235 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_28235 PF08659 KR domain JJB98_28235 PF00698 Acyl transferase domain JJB98_28235 PF16197 Ketoacyl-synthetase C-terminal extension JJB98_28240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_28240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_28240 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_28255 PF00440 Bacterial regulatory proteins, tetR family JJB98_28260 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_28265 PF03466 LysR substrate binding domain JJB98_28265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_28275 PF00326 Prolyl oligopeptidase family JJB98_28275 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJB98_28280 PF00675 Insulinase (Peptidase family M16) JJB98_28280 PF05193 Peptidase M16 inactive domain JJB98_28285 PF05193 Peptidase M16 inactive domain JJB98_28330 PF00685 Sulfotransferase domain JJB98_28335 PF01061 ABC-2 type transporter JJB98_28340 PF00005 ABC transporter JJB98_28345 PF05401 Nodulation protein S (NodS) JJB98_28350 PF00535 Glycosyl transferase family 2 JJB98_28355 PF01522 Polysaccharide deacetylase JJB98_28360 PF02474 Nodulation protein A (NodA) JJB98_28370 PF03466 LysR substrate binding domain JJB98_28370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_28380 PF13411 MerR HTH family regulatory protein JJB98_28385 PF13458 Periplasmic binding protein JJB98_28395 PF03472 Autoinducer binding domain JJB98_28395 PF00196 Bacterial regulatory proteins, luxR family JJB98_28430 PF00665 Integrase core domain JJB98_28430 PF13276 HTH-like domain JJB98_28430 PF13333 Integrase core domain JJB98_28440 PF01012 Electron transfer flavoprotein domain JJB98_28445 PF02954 Bacterial regulatory protein, Fis family JJB98_28445 PF01590 GAF domain JJB98_28445 PF00158 Sigma-54 interaction domain JJB98_28450 PF00155 Aminotransferase class I and II JJB98_28455 PF00296 Luciferase-like monooxygenase JJB98_28460 PF00375 Sodium:dicarboxylate symporter family JJB98_28470 PF00486 Transcriptional regulatory protein, C terminal JJB98_28470 PF00072 Response regulator receiver domain JJB98_28475 PF04972 BON domain JJB98_28475 PF00263 Bacterial type II and III secretion system protein JJB98_28475 PF13629 Pilus formation protein N terminal region JJB98_28490 PF00289 Biotin carboxylase, N-terminal domain JJB98_28490 PF00364 Biotin-requiring enzyme JJB98_28490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_28490 PF02785 Biotin carboxylase C-terminal domain JJB98_28500 PF01039 Carboxyl transferase domain JJB98_28510 PF13683 Integrase core domain JJB98_28510 PF13276 HTH-like domain JJB98_28520 PF13193 AMP-binding enzyme C-terminal domain JJB98_28520 PF00501 AMP-binding enzyme JJB98_28535 PF13419 Haloacid dehalogenase-like hydrolase JJB98_28545 PF00067 Cytochrome P450 JJB98_28555 PF00034 Cytochrome c JJB98_28555 PF03150 Di-haem cytochrome c peroxidase JJB98_28565 PF00155 Aminotransferase class I and II JJB98_28575 PF00483 Nucleotidyl transferase JJB98_28600 PF04055 Radical SAM superfamily JJB98_28600 PF06463 Molybdenum Cofactor Synthesis C JJB98_28610 PF01575 MaoC like domain JJB98_28620 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_28625 PF03459 TOBE domain JJB98_28625 PF10649 Protein of unknown function (DUF2478) JJB98_28625 PF00005 ABC transporter JJB98_28630 PF00313 'Cold-shock' DNA-binding domain JJB98_28635 PF01638 HxlR-like helix-turn-helix JJB98_28670 PF00578 AhpC/TSA family JJB98_28690 PF00766 Electron transfer flavoprotein FAD-binding domain JJB98_28690 PF01012 Electron transfer flavoprotein domain JJB98_28700 PF03206 Nitrogen fixation protein NifW JJB98_28705 PF00682 HMGL-like JJB98_28710 PF04891 NifQ JJB98_28715 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family JJB98_28730 PF04319 NifZ domain JJB98_28735 PF00037 4Fe-4S binding domain JJB98_28740 PF04055 Radical SAM superfamily JJB98_28740 PF02579 Dinitrogenase iron-molybdenum cofactor JJB98_28755 PF00266 Aminotransferase class-V JJB98_28760 PF04324 BFD-like [2Fe-2S] binding domain JJB98_28760 PF01106 NifU-like domain JJB98_28760 PF01592 NifU-like N terminal domain JJB98_28765 PF01521 Iron-sulphur cluster biosynthesis JJB98_28780 PF04055 Radical SAM superfamily JJB98_28785 PF00005 ABC transporter JJB98_28785 PF00664 ABC transporter transmembrane region JJB98_28790 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JJB98_28800 PF13237 4Fe-4S dicluster domain JJB98_28805 PF05082 Rop-like JJB98_28810 PF03270 Protein of unknown function, DUF269 JJB98_28815 PF02579 Dinitrogenase iron-molybdenum cofactor JJB98_28820 PF00148 Nitrogenase component 1 type Oxidoreductase JJB98_28825 PF04324 BFD-like [2Fe-2S] binding domain JJB98_28825 PF00148 Nitrogenase component 1 type Oxidoreductase JJB98_28830 PF11844 Domain of unknown function (DUF3364) JJB98_28830 PF00148 Nitrogenase component 1 type Oxidoreductase JJB98_28835 PF00148 Nitrogenase component 1 type Oxidoreductase JJB98_28840 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) JJB98_28845 PF00672 HAMP domain JJB98_28845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_28845 PF02203 Tar ligand binding domain homologue JJB98_28870 PF02569 Pantoate-beta-alanine ligase JJB98_28875 PF02548 Ketopantoate hydroxymethyltransferase JJB98_28880 PF00202 Aminotransferase class-III JJB98_28890 PF00155 Aminotransferase class I and II JJB98_28895 PF02261 Aspartate decarboxylase JJB98_28900 PF06968 Biotin and Thiamin Synthesis associated domain JJB98_28900 PF04055 Radical SAM superfamily JJB98_28915 PF04715 Anthranilate synthase component I, N terminal region JJB98_28915 PF00425 chorismate binding enzyme JJB98_28920 PF00117 Glutamine amidotransferase class-I JJB98_28920 PF02885 Glycosyl transferase family, helical bundle domain JJB98_28920 PF00591 Glycosyl transferase family, a/b domain JJB98_28930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_28930 PF12806 Acetyl-CoA dehydrogenase C-terminal like JJB98_28930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_28930 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_28950 PF01472 PUA domain JJB98_28950 PF00696 Amino acid kinase family JJB98_28955 PF00107 Zinc-binding dehydrogenase JJB98_28955 PF08240 Alcohol dehydrogenase GroES-like domain JJB98_28960 PF00378 Enoyl-CoA hydratase/isomerase JJB98_28970 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_28970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_28970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_28975 PF00155 Aminotransferase class I and II JJB98_28975 PF00392 Bacterial regulatory proteins, gntR family JJB98_28980 PF00717 Peptidase S24-like JJB98_28980 PF01726 LexA DNA binding domain JJB98_28990 PF00202 Aminotransferase class-III JJB98_28995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_28995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_29005 PF00005 ABC transporter JJB98_29010 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29015 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29030 PF00551 Formyl transferase JJB98_29030 PF01842 ACT domain JJB98_29060 PF05717 IS66 Orf2 like protein JJB98_29075 PF00296 Luciferase-like monooxygenase JJB98_29105 PF00795 Carbon-nitrogen hydrolase JJB98_29145 PF13416 Bacterial extracellular solute-binding protein JJB98_29165 PF01642 Methylmalonyl-CoA mutase JJB98_29165 PF02310 B12 binding domain JJB98_29170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_29170 PF18140 Propionyl-coenzyme A carboxylase BT domain JJB98_29170 PF00289 Biotin carboxylase, N-terminal domain JJB98_29170 PF02785 Biotin carboxylase C-terminal domain JJB98_29170 PF00364 Biotin-requiring enzyme JJB98_29175 PF01039 Carboxyl transferase domain JJB98_29185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJB98_29185 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_29190 PF00364 Biotin-requiring enzyme JJB98_29190 PF02817 e3 binding domain JJB98_29190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJB98_29195 PF17831 Pyruvate dehydrogenase E1 component middle domain JJB98_29195 PF00456 Transketolase, thiamine diphosphate binding domain JJB98_29200 PF01037 Lrp/AsnC ligand binding domain JJB98_29230 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JJB98_29230 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JJB98_29240 PF00171 Aldehyde dehydrogenase family JJB98_29255 PF00202 Aminotransferase class-III JJB98_29260 PF03466 LysR substrate binding domain JJB98_29260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_29275 PF00392 Bacterial regulatory proteins, gntR family JJB98_29275 PF07729 FCD domain JJB98_29280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_29280 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_29280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_29300 PF02530 Porin subfamily JJB98_29310 PF08402 TOBE domain JJB98_29310 PF00005 ABC transporter JJB98_29315 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29320 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29330 PF00135 Carboxylesterase family JJB98_29345 PF00857 Isochorismatase family JJB98_29350 PF13416 Bacterial extracellular solute-binding protein JJB98_29400 PF00732 GMC oxidoreductase JJB98_29400 PF05199 GMC oxidoreductase JJB98_29405 PF00171 Aldehyde dehydrogenase family JJB98_29415 PF00378 Enoyl-CoA hydratase/isomerase JJB98_29420 PF13193 AMP-binding enzyme C-terminal domain JJB98_29420 PF00501 AMP-binding enzyme JJB98_29430 PF00501 AMP-binding enzyme JJB98_29430 PF13193 AMP-binding enzyme C-terminal domain JJB98_29445 PF13808 DDE_Tnp_1-associated JJB98_29445 PF01609 Transposase DDE domain JJB98_29455 PF00378 Enoyl-CoA hydratase/isomerase JJB98_29470 PF03466 LysR substrate binding domain JJB98_29470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_29475 PF07690 Major Facilitator Superfamily JJB98_29480 PF01266 FAD dependent oxidoreductase JJB98_29490 PF00005 ABC transporter JJB98_29495 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29500 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29510 PF00378 Enoyl-CoA hydratase/isomerase JJB98_29520 PF13193 AMP-binding enzyme C-terminal domain JJB98_29520 PF00501 AMP-binding enzyme JJB98_29530 PF00171 Aldehyde dehydrogenase family JJB98_29535 PF13193 AMP-binding enzyme C-terminal domain JJB98_29535 PF00501 AMP-binding enzyme JJB98_29540 PF03472 Autoinducer binding domain JJB98_29540 PF00196 Bacterial regulatory proteins, luxR family JJB98_29545 PF00765 Autoinducer synthase JJB98_29550 PF03466 LysR substrate binding domain JJB98_29550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_29560 PF03743 Bacterial conjugation TrbI-like protein JJB98_29575 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JJB98_29590 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JJB98_29600 PF04956 TrbC/VIRB2 family JJB98_29605 PF00437 Type II/IV secretion system protein JJB98_29610 PF07690 Major Facilitator Superfamily JJB98_29625 PF02534 Type IV secretory system Conjugative DNA transfer JJB98_29630 PF01522 Polysaccharide deacetylase JJB98_29635 PF00313 'Cold-shock' DNA-binding domain JJB98_29645 PF10145 Phage-related minor tail protein JJB98_29645 PF01464 Transglycosylase SLT domain JJB98_29645 PF01551 Peptidase family M23 JJB98_29650 PF10502 Signal peptidase, peptidase S26 JJB98_29690 PF05284 Protein of unknown function (DUF736) JJB98_29720 PF12327 FtsZ family, C-terminal domain JJB98_29720 PF00091 Tubulin/FtsZ family, GTPase domain JJB98_29725 PF05284 Protein of unknown function (DUF736) JJB98_29745 PF07820 TraC-like protein JJB98_29750 PF06412 Conjugal transfer protein TraD JJB98_29755 PF07478 D-ala D-ala ligase C-terminus JJB98_29785 PF08402 TOBE domain JJB98_29785 PF00005 ABC transporter JJB98_29790 PF01321 Creatinase/Prolidase N-terminal domain JJB98_29790 PF00557 Metallopeptidase family M24 JJB98_29805 PF07478 D-ala D-ala ligase C-terminus JJB98_29815 PF01425 Amidase JJB98_29830 PF07722 Peptidase C26 JJB98_29840 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_29850 PF00005 ABC transporter JJB98_29850 PF08402 TOBE domain JJB98_29860 PF01965 DJ-1/PfpI family JJB98_29860 PF12833 Helix-turn-helix domain JJB98_29865 PF01266 FAD dependent oxidoreductase JJB98_29870 PF04267 Sarcosine oxidase, delta subunit family JJB98_29875 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_29875 PF17806 Sarcosine oxidase A3 domain JJB98_29875 PF01571 Aminomethyltransferase folate-binding domain JJB98_29875 PF08669 Glycine cleavage T-protein C-terminal barrel domain JJB98_29885 PF00551 Formyl transferase JJB98_29910 PF05284 Protein of unknown function (DUF736) JJB98_29925 PF00893 Small Multidrug Resistance protein JJB98_29945 PF13362 Toprim domain JJB98_29945 PF18818 Metallopeptidase superfamily domain JJB98_29945 PF08401 Domain of unknown function (DUF1738) JJB98_29955 PF00565 Staphylococcal nuclease homologue JJB98_29960 PF00027 Cyclic nucleotide-binding domain JJB98_29960 PF13545 Crp-like helix-turn-helix domain JJB98_29985 PF03597 Cytochrome oxidase maturation protein cbb3-type JJB98_29990 PF00403 Heavy-metal-associated domain JJB98_30000 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JJB98_30000 PF12801 4Fe-4S binding domain JJB98_30000 PF13746 4Fe-4S dicluster domain JJB98_30005 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJB98_30005 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JJB98_30020 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_30030 PF04055 Radical SAM superfamily JJB98_30040 PF00072 Response regulator receiver domain JJB98_30040 PF00196 Bacterial regulatory proteins, luxR family JJB98_30045 PF00512 His Kinase A (phospho-acceptor) domain JJB98_30045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_30045 PF00989 PAS fold JJB98_30060 PF00011 Hsp20/alpha crystallin family JJB98_30080 PF02332 Methane/Phenol/Toluene Hydroxylase JJB98_30085 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_30085 PF00970 Oxidoreductase FAD-binding domain JJB98_30085 PF00175 Oxidoreductase NAD-binding domain JJB98_30090 PF02332 Methane/Phenol/Toluene Hydroxylase JJB98_30095 PF02406 MmoB/DmpM family JJB98_30100 PF00118 TCP-1/cpn60 chaperonin family JJB98_30150 PF02911 Formyl transferase, C-terminal domain JJB98_30150 PF00551 Formyl transferase JJB98_30155 PF13537 Glutamine amidotransferase domain JJB98_30155 PF00733 Asparagine synthase JJB98_30170 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_30170 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_30175 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_30180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_30180 PF00005 ABC transporter JJB98_30185 PF00005 ABC transporter JJB98_30185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_30190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_30200 PF07702 UTRA domain JJB98_30200 PF00392 Bacterial regulatory proteins, gntR family JJB98_30205 PF09587 Bacterial capsule synthesis protein PGA_cap JJB98_30220 PF03390 2-hydroxycarboxylate transporter family JJB98_30230 PF00486 Transcriptional regulatory protein, C terminal JJB98_30230 PF00072 Response regulator receiver domain JJB98_30235 PF00512 His Kinase A (phospho-acceptor) domain JJB98_30235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_30240 PF10137 Predicted nucleotide-binding protein containing TIR-like domain JJB98_30260 PF02661 Fic/DOC family JJB98_30350 PF00465 Iron-containing alcohol dehydrogenase JJB98_30355 PF00924 Mechanosensitive ion channel JJB98_30355 PF12795 Mechanosensitive ion channel porin domain JJB98_30355 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJB98_30365 PF00563 EAL domain JJB98_30365 PF00990 Diguanylate cyclase, GGDEF domain JJB98_30365 PF03707 Bacterial signalling protein N terminal repeat JJB98_30365 PF13188 PAS domain JJB98_30370 PF00999 Sodium/hydrogen exchanger family JJB98_30380 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_30395 PF01209 ubiE/COQ5 methyltransferase family JJB98_30410 PF00331 Glycosyl hydrolase family 10 JJB98_30420 PF00850 Histone deacetylase domain JJB98_30450 PF01266 FAD dependent oxidoreductase JJB98_30455 PF00005 ABC transporter JJB98_30460 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_30465 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_30475 PF01266 FAD dependent oxidoreductase JJB98_30480 PF00202 Aminotransferase class-III JJB98_30490 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_30490 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_30495 PF00941 FAD binding domain in molybdopterin dehydrogenase JJB98_30495 PF03450 CO dehydrogenase flavoprotein C-terminal domain JJB98_30500 PF10518 TAT (twin-arginine translocation) pathway signal sequence JJB98_30500 PF01799 [2Fe-2S] binding domain JJB98_30500 PF00111 2Fe-2S iron-sulfur cluster binding domain JJB98_30505 PF17925 Tetracyclin repressor-like, C-terminal domain JJB98_30505 PF00440 Bacterial regulatory proteins, tetR family JJB98_30510 PF03466 LysR substrate binding domain JJB98_30510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_30520 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_30560 PF00771 FHIPEP family JJB98_30585 PF04545 Sigma-70, region 4 JJB98_30585 PF04542 Sigma-70 region 2 JJB98_30595 PF18269 T3SS EscN ATPase C-terminal domain JJB98_30595 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJB98_30595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJB98_30600 PF00072 Response regulator receiver domain JJB98_30600 PF00486 Transcriptional regulatory protein, C terminal JJB98_30615 PF01739 CheR methyltransferase, SAM binding domain JJB98_30615 PF03705 CheR methyltransferase, all-alpha domain JJB98_30620 PF00072 Response regulator receiver domain JJB98_30620 PF01339 CheB methylesterase JJB98_30625 PF01627 Hpt domain JJB98_30625 PF01584 CheW-like domain JJB98_30625 PF02895 Signal transducing histidine kinase, homodimeric domain JJB98_30625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_30625 PF00072 Response regulator receiver domain JJB98_30630 PF01584 CheW-like domain JJB98_30635 PF01627 Hpt domain JJB98_30635 PF01584 CheW-like domain JJB98_30635 PF00072 Response regulator receiver domain JJB98_30635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_30635 PF02895 Signal transducing histidine kinase, homodimeric domain JJB98_30640 PF10090 Histidine phosphotransferase C-terminal domain JJB98_30645 PF00459 Inositol monophosphatase family JJB98_30670 PF03449 Transcription elongation factor, N-terminal JJB98_30670 PF01272 Transcription elongation factor, GreA/GreB, C-term JJB98_30695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_30695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_30700 PF01476 LysM domain JJB98_30700 PF03734 L,D-transpeptidase catalytic domain JJB98_30710 PF00067 Cytochrome P450 JJB98_30715 PF00067 Cytochrome P450 JJB98_30740 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_30745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_30745 PF03466 LysR substrate binding domain JJB98_30750 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_30750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_30750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_30755 PF02515 CoA-transferase family III JJB98_30765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_30765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_30765 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_30775 PF03006 Haemolysin-III related JJB98_30780 PF04317 YcjX-like family, DUF463 JJB98_30785 PF05128 Domain of unknown function (DUF697) JJB98_30815 PF00672 HAMP domain JJB98_30815 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_30830 PF00313 'Cold-shock' DNA-binding domain JJB98_30835 PF01037 Lrp/AsnC ligand binding domain JJB98_30840 PF00171 Aldehyde dehydrogenase family JJB98_30840 PF14850 DNA-binding domain of Proline dehydrogenase JJB98_30840 PF01619 Proline dehydrogenase JJB98_30840 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JJB98_30845 PF02515 CoA-transferase family III JJB98_30850 PF02798 Glutathione S-transferase, N-terminal domain JJB98_30850 PF14497 Glutathione S-transferase, C-terminal domain JJB98_30875 PF16123 Hydroxyacylglutathione hydrolase C-terminus JJB98_30875 PF00753 Metallo-beta-lactamase superfamily JJB98_30885 PF04536 TPM domain JJB98_30890 PF04011 LemA family JJB98_30895 PF00378 Enoyl-CoA hydratase/isomerase JJB98_30900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_30900 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_30900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_30905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_30905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_30905 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_30910 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JJB98_30910 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JJB98_30915 PF13180 PDZ domain JJB98_30920 PF00701 Dihydrodipicolinate synthetase family JJB98_30925 PF13180 PDZ domain JJB98_30930 PF00196 Bacterial regulatory proteins, luxR family JJB98_30930 PF00072 Response regulator receiver domain JJB98_30935 PF00512 His Kinase A (phospho-acceptor) domain JJB98_30935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_30940 PF00486 Transcriptional regulatory protein, C terminal JJB98_30940 PF00072 Response regulator receiver domain JJB98_30950 PF00575 S1 RNA binding domain JJB98_30950 PF16921 Tex protein YqgF-like domain JJB98_30950 PF17674 HHH domain JJB98_30950 PF09371 Tex-like protein N-terminal domain JJB98_30955 PF01425 Amidase JJB98_30975 PF01081 KDPG and KHG aldolase JJB98_30980 PF05035 2-keto-3-deoxy-galactonokinase JJB98_30985 PF00296 Luciferase-like monooxygenase JJB98_30990 PF01613 Flavin reductase like domain JJB98_30995 PF02954 Bacterial regulatory protein, Fis family JJB98_30995 PF01590 GAF domain JJB98_30995 PF00158 Sigma-54 interaction domain JJB98_31000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_31000 PF00682 HMGL-like JJB98_31000 PF02436 Conserved carboxylase domain JJB98_31000 PF02785 Biotin carboxylase C-terminal domain JJB98_31000 PF00364 Biotin-requiring enzyme JJB98_31000 PF00289 Biotin carboxylase, N-terminal domain JJB98_31005 PF13193 AMP-binding enzyme C-terminal domain JJB98_31005 PF00501 AMP-binding enzyme JJB98_31010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_31010 PF08269 Cache domain JJB98_31045 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJB98_31045 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJB98_31050 PF01979 Amidohydrolase family JJB98_31060 PF01494 FAD binding domain JJB98_31075 PF00849 RNA pseudouridylate synthase JJB98_31080 PF00140 Sigma-70 factor, region 1.2 JJB98_31080 PF04542 Sigma-70 region 2 JJB98_31080 PF04545 Sigma-70, region 4 JJB98_31095 PF00990 Diguanylate cyclase, GGDEF domain JJB98_31100 PF01810 LysE type translocator JJB98_31110 PF00106 short chain dehydrogenase JJB98_31125 PF04542 Sigma-70 region 2 JJB98_31125 PF00140 Sigma-70 factor, region 1.2 JJB98_31125 PF03979 Sigma-70 factor, region 1.1 JJB98_31125 PF04546 Sigma-70, non-essential region JJB98_31125 PF04539 Sigma-70 region 3 JJB98_31125 PF04545 Sigma-70, region 4 JJB98_31130 PF01807 CHC2 zinc finger JJB98_31130 PF08275 DNA primase catalytic core, N-terminal domain JJB98_31130 PF08278 DNA primase DnaG DnaB-binding JJB98_31130 PF10410 DnaB-helicase binding domain of primase JJB98_31160 PF01810 LysE type translocator JJB98_31185 PF00501 AMP-binding enzyme JJB98_31185 PF13193 AMP-binding enzyme C-terminal domain JJB98_31195 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JJB98_31195 PF00117 Glutamine amidotransferase class-I JJB98_31225 PF07690 Major Facilitator Superfamily JJB98_31230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJB98_31230 PF02142 MGS-like domain JJB98_31230 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JJB98_31235 PF03449 Transcription elongation factor, N-terminal JJB98_31235 PF01272 Transcription elongation factor, GreA/GreB, C-term JJB98_31240 PF01037 Lrp/AsnC ligand binding domain JJB98_31245 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_31250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_31250 PF03466 LysR substrate binding domain JJB98_31255 PF00701 Dihydrodipicolinate synthetase family JJB98_31270 PF13614 AAA domain JJB98_31280 PF02515 CoA-transferase family III JJB98_31285 PF03328 HpcH/HpaI aldolase/citrate lyase family JJB98_31295 PF08808 RES domain JJB98_31320 PF13426 PAS domain JJB98_31320 PF13188 PAS domain JJB98_31320 PF00989 PAS fold JJB98_31320 PF00512 His Kinase A (phospho-acceptor) domain JJB98_31320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_31330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_31335 PF02803 Thiolase, C-terminal domain JJB98_31335 PF00108 Thiolase, N-terminal domain JJB98_31340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJB98_31340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJB98_31340 PF01842 ACT domain JJB98_31345 PF00266 Aminotransferase class-V JJB98_31360 PF02798 Glutathione S-transferase, N-terminal domain JJB98_31375 PF07690 Major Facilitator Superfamily JJB98_31380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJB98_31380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJB98_31380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJB98_31380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJB98_31390 PF01070 FMN-dependent dehydrogenase JJB98_31400 PF08501 Shikimate dehydrogenase substrate binding domain JJB98_31400 PF01488 Shikimate / quinate 5-dehydrogenase JJB98_31400 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JJB98_31405 PF00916 Sulfate permease family JJB98_31405 PF01740 STAS domain JJB98_31415 PF00009 Elongation factor Tu GTP binding domain JJB98_31415 PF14492 Elongation Factor G, domain II JJB98_31415 PF00679 Elongation factor G C-terminus JJB98_31415 PF03764 Elongation factor G, domain IV JJB98_31425 PF00155 Aminotransferase class I and II JJB98_31430 PF02798 Glutathione S-transferase, N-terminal domain JJB98_31455 PF00248 Aldo/keto reductase family JJB98_31480 PF13417 Glutathione S-transferase, N-terminal domain JJB98_31495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_31495 PF03466 LysR substrate binding domain JJB98_31510 PF04851 Type III restriction enzyme, res subunit JJB98_31510 PF12344 Ultra-violet resistance protein B JJB98_31510 PF00271 Helicase conserved C-terminal domain JJB98_31510 PF17757 UvrB interaction domain JJB98_31510 PF02151 UvrB/uvrC motif JJB98_31575 PF01575 MaoC like domain JJB98_31585 PF06071 Protein of unknown function (DUF933) JJB98_31585 PF01926 50S ribosome-binding GTPase JJB98_31590 PF01195 Peptidyl-tRNA hydrolase JJB98_31595 PF01386 Ribosomal L25p family JJB98_31595 PF14693 Ribosomal protein TL5, C-terminal domain JJB98_31610 PF01790 Prolipoprotein diacylglyceryl transferase JJB98_31620 PF02578 Multi-copper polyphenol oxidoreductase laccase JJB98_31630 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JJB98_31630 PF14572 Phosphoribosyl synthetase-associated domain JJB98_31640 PF07478 D-ala D-ala ligase C-terminus JJB98_31645 PF00885 6,7-dimethyl-8-ribityllumazine synthase JJB98_31655 PF14748 Pyrroline-5-carboxylate reductase dimerisation JJB98_31655 PF03807 NADP oxidoreductase coenzyme F420-dependent JJB98_31665 PF01361 Tautomerase enzyme JJB98_31670 PF13393 Histidyl-tRNA synthetase JJB98_31670 PF03129 Anticodon binding domain JJB98_31675 PF01063 Amino-transferase class IV JJB98_31685 PF12802 MarR family JJB98_31690 PF00486 Transcriptional regulatory protein, C terminal JJB98_31690 PF00072 Response regulator receiver domain JJB98_31695 PF00512 His Kinase A (phospho-acceptor) domain JJB98_31695 PF00672 HAMP domain JJB98_31695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_31715 PF00445 Ribonuclease T2 family JJB98_31720 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JJB98_31725 PF00313 'Cold-shock' DNA-binding domain JJB98_31730 PF13505 Outer membrane protein beta-barrel domain JJB98_31735 PF01541 GIY-YIG catalytic domain JJB98_31735 PF02151 UvrB/uvrC motif JJB98_31735 PF08459 UvrC Helix-hairpin-helix N-terminal JJB98_31740 PF01066 CDP-alcohol phosphatidyltransferase JJB98_31750 PF02391 MoaE protein JJB98_31755 PF05175 Methyltransferase small domain JJB98_31765 PF03631 Virulence factor BrkB JJB98_31770 PF00563 EAL domain JJB98_31770 PF00196 Bacterial regulatory proteins, luxR family JJB98_31780 PF00072 Response regulator receiver domain JJB98_31785 PF01687 Riboflavin kinase JJB98_31785 PF06574 FAD synthetase JJB98_31790 PF00133 tRNA synthetases class I (I, L, M and V) JJB98_31790 PF08264 Anticodon-binding domain of tRNA JJB98_31795 PF01252 Signal peptidase (SPase) II JJB98_31805 PF05193 Peptidase M16 inactive domain JJB98_31805 PF00675 Insulinase (Peptidase family M16) JJB98_31810 PF05193 Peptidase M16 inactive domain JJB98_31815 PF00472 RF-1 domain JJB98_31825 PF01119 DNA mismatch repair protein, C-terminal domain JJB98_31825 PF08676 MutL C terminal dimerisation domain JJB98_31835 PF00849 RNA pseudouridylate synthase JJB98_31835 PF01479 S4 domain JJB98_31840 PF14437 MafB19-like deaminase JJB98_31845 PF00561 alpha/beta hydrolase fold JJB98_31850 PF02844 Phosphoribosylglycinamide synthetase, N domain JJB98_31850 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JJB98_31850 PF02843 Phosphoribosylglycinamide synthetase, C domain JJB98_31860 PF00183 Hsp90 protein JJB98_31875 PF04279 Intracellular septation protein A JJB98_31880 PF02601 Exonuclease VII, large subunit JJB98_31880 PF13742 OB-fold nucleic acid binding domain JJB98_31905 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JJB98_31910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JJB98_31925 PF00459 Inositol monophosphatase family JJB98_31930 PF01523 Putative modulator of DNA gyrase JJB98_31940 PF01040 UbiA prenyltransferase family JJB98_31950 PF04452 RNA methyltransferase JJB98_31955 PF13393 Histidyl-tRNA synthetase JJB98_31960 PF01634 ATP phosphoribosyltransferase JJB98_31965 PF00535 Glycosyl transferase family 2 JJB98_31975 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) JJB98_31980 PF01476 LysM domain JJB98_31980 PF03734 L,D-transpeptidase catalytic domain JJB98_31980 PF17969 L,D-transpeptidase C-terminal domain JJB98_31995 PF00166 Chaperonin 10 Kd subunit JJB98_32000 PF00118 TCP-1/cpn60 chaperonin family JJB98_32025 PF01425 Amidase JJB98_32030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JJB98_32040 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_32045 PF00005 ABC transporter JJB98_32045 PF06472 ABC transporter transmembrane region 2 JJB98_32060 PF13183 4Fe-4S dicluster domain JJB98_32060 PF02754 Cysteine-rich domain JJB98_32065 PF01565 FAD binding domain JJB98_32075 PF01565 FAD binding domain JJB98_32075 PF02913 FAD linked oxidases, C-terminal domain JJB98_32080 PF00034 Cytochrome c JJB98_32085 PF00561 alpha/beta hydrolase fold JJB98_32105 PF00444 Ribosomal protein L36 JJB98_32115 PF13419 Haloacid dehalogenase-like hydrolase JJB98_32120 PF04073 Aminoacyl-tRNA editing domain JJB98_32125 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_32130 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_32145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_32145 PF03466 LysR substrate binding domain JJB98_32155 PF02678 Pirin JJB98_32155 PF17954 Quercetinase C-terminal cupin domain JJB98_32160 PF03358 NADPH-dependent FMN reductase JJB98_32185 PF00535 Glycosyl transferase family 2 JJB98_32210 PF01370 NAD dependent epimerase/dehydratase family JJB98_32215 PF03707 Bacterial signalling protein N terminal repeat JJB98_32215 PF00563 EAL domain JJB98_32215 PF00990 Diguanylate cyclase, GGDEF domain JJB98_32220 PF02615 Malate/L-lactate dehydrogenase JJB98_32225 PF00296 Luciferase-like monooxygenase JJB98_32230 PF01557 Fumarylacetoacetate (FAA) hydrolase family JJB98_32235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_32235 PF03466 LysR substrate binding domain JJB98_32250 PF01037 Lrp/AsnC ligand binding domain JJB98_32260 PF03466 LysR substrate binding domain JJB98_32260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_32265 PF13533 Biotin-lipoyl like JJB98_32270 PF07690 Major Facilitator Superfamily JJB98_32275 PF02627 Carboxymuconolactone decarboxylase family JJB98_32285 PF00005 ABC transporter JJB98_32290 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_32295 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_32300 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJB98_32310 PF00296 Luciferase-like monooxygenase JJB98_32315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJB98_32315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJB98_32315 PF00205 Thiamine pyrophosphate enzyme, central domain JJB98_32325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJB98_32330 PF00171 Aldehyde dehydrogenase family JJB98_32335 PF00561 alpha/beta hydrolase fold JJB98_32335 PF00106 short chain dehydrogenase JJB98_32355 PF00211 Adenylate and Guanylate cyclase catalytic domain JJB98_32360 PF00884 Sulfatase JJB98_32360 PF16347 Domain of unknown function (DUF4976) JJB98_32365 PF07729 FCD domain JJB98_32365 PF00392 Bacterial regulatory proteins, gntR family JJB98_32375 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_32380 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_32385 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JJB98_32385 PF01488 Shikimate / quinate 5-dehydrogenase JJB98_32385 PF08501 Shikimate dehydrogenase substrate binding domain JJB98_32410 PF00072 Response regulator receiver domain JJB98_32420 PF00459 Inositol monophosphatase family JJB98_32425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_32425 PF03466 LysR substrate binding domain JJB98_32435 PF01810 LysE type translocator JJB98_32455 PF00011 Hsp20/alpha crystallin family JJB98_32460 PF01493 GXGXG motif JJB98_32460 PF01645 Conserved region in glutamate synthase JJB98_32460 PF04898 Glutamate synthase central domain JJB98_32460 PF00310 Glutamine amidotransferases class-II JJB98_32465 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJB98_32465 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JJB98_32475 PF00571 CBS domain JJB98_32475 PF01380 SIS domain JJB98_32485 PF01145 SPFH domain / Band 7 family JJB98_32485 PF16200 C-terminal region of band_7 JJB98_32495 PF00762 Ferrochelatase JJB98_32505 PF03824 High-affinity nickel-transport protein JJB98_32515 PF01432 Peptidase family M3 JJB98_32525 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JJB98_32525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJB98_32535 PF01042 Endoribonuclease L-PSP JJB98_32540 PF16653 Saccharopine dehydrogenase C-terminal domain JJB98_32540 PF03435 Saccharopine dehydrogenase NADP binding domain JJB98_32550 PF02308 MgtC family JJB98_32560 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJB98_32560 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJB98_32565 PF01297 Zinc-uptake complex component A periplasmic JJB98_32570 PF00950 ABC 3 transport family JJB98_32575 PF00005 ABC transporter JJB98_32585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JJB98_32585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JJB98_32625 PF00501 AMP-binding enzyme JJB98_32625 PF13193 AMP-binding enzyme C-terminal domain JJB98_32635 PF00873 AcrB/AcrD/AcrF family JJB98_32640 PF00183 Hsp90 protein JJB98_32640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_32660 PF05384 Sensor protein DegS JJB98_32660 PF07730 Histidine kinase JJB98_32660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_32665 PF00072 Response regulator receiver domain JJB98_32665 PF00196 Bacterial regulatory proteins, luxR family JJB98_32685 PF00072 Response regulator receiver domain JJB98_32695 PF08281 Sigma-70, region 4 JJB98_32695 PF04542 Sigma-70 region 2 JJB98_32700 PF00881 Nitroreductase family JJB98_32705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_32705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_32705 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_32710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_32710 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_32710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_32715 PF02770 Acyl-CoA dehydrogenase, middle domain JJB98_32715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJB98_32715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJB98_32720 PF00501 AMP-binding enzyme JJB98_32720 PF13193 AMP-binding enzyme C-terminal domain JJB98_32720 PF00668 Condensation domain JJB98_32720 PF00550 Phosphopantetheine attachment site JJB98_32725 PF00378 Enoyl-CoA hydratase/isomerase JJB98_32730 PF00106 short chain dehydrogenase JJB98_32740 PF00108 Thiolase, N-terminal domain JJB98_32740 PF02803 Thiolase, C-terminal domain JJB98_32745 PF13193 AMP-binding enzyme C-terminal domain JJB98_32745 PF00501 AMP-binding enzyme JJB98_32755 PF12697 Alpha/beta hydrolase family JJB98_32765 PF02627 Carboxymuconolactone decarboxylase family JJB98_32770 PF12680 SnoaL-like domain JJB98_32770 PF08281 Sigma-70, region 4 JJB98_32770 PF04542 Sigma-70 region 2 JJB98_32780 PF05721 Phytanoyl-CoA dioxygenase (PhyH) JJB98_32790 PF03480 Bacterial extracellular solute-binding protein, family 7 JJB98_32825 PF04225 Opacity-associated protein A LysM-like domain JJB98_32825 PF01551 Peptidase family M23 JJB98_32845 PF07724 AAA domain (Cdc48 subfamily) JJB98_32845 PF17871 AAA lid domain JJB98_32845 PF02861 Clp amino terminal domain, pathogenicity island component JJB98_32845 PF00004 ATPase family associated with various cellular activities (AAA) JJB98_32845 PF10431 C-terminal, D2-small domain, of ClpB protein JJB98_32860 PF00561 alpha/beta hydrolase fold JJB98_32865 PF07021 Methionine biosynthesis protein MetW JJB98_32865 PF00561 alpha/beta hydrolase fold JJB98_32870 PF00561 alpha/beta hydrolase fold JJB98_32880 PF00155 Aminotransferase class I and II JJB98_32885 PF02153 Prephenate dehydrogenase JJB98_32915 PF00005 ABC transporter JJB98_32925 PF02954 Bacterial regulatory protein, Fis family JJB98_32925 PF00072 Response regulator receiver domain JJB98_32925 PF00158 Sigma-54 interaction domain JJB98_32940 PF02627 Carboxymuconolactone decarboxylase family JJB98_32945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJB98_32945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJB98_32950 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JJB98_32950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJB98_32960 PF00206 Lyase JJB98_32960 PF14698 Argininosuccinate lyase C-terminal JJB98_32965 PF08534 Redoxin JJB98_32975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_32975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_32980 PF00766 Electron transfer flavoprotein FAD-binding domain JJB98_32980 PF01012 Electron transfer flavoprotein domain JJB98_32985 PF01012 Electron transfer flavoprotein domain JJB98_32990 PF01923 Cobalamin adenosyltransferase JJB98_33005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_33005 PF00512 His Kinase A (phospho-acceptor) domain JJB98_33005 PF01627 Hpt domain JJB98_33005 PF00072 Response regulator receiver domain JJB98_33010 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJB98_33015 PF00730 HhH-GPD superfamily base excision DNA repair protein JJB98_33015 PF06029 AlkA N-terminal domain JJB98_33015 PF12833 Helix-turn-helix domain JJB98_33015 PF02805 Metal binding domain of Ada JJB98_33040 PF07311 Dodecin JJB98_33050 PF03466 LysR substrate binding domain JJB98_33050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJB98_33055 PF00005 ABC transporter JJB98_33055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_33060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJB98_33060 PF00005 ABC transporter JJB98_33065 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_33065 PF12911 N-terminal TM domain of oligopeptide transport permease C JJB98_33070 PF00528 Binding-protein-dependent transport system inner membrane component JJB98_33075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJB98_33080 PF01546 Peptidase family M20/M25/M40 JJB98_33085 PF13180 PDZ domain JJB98_33100 PF06965 Na+/H+ antiporter 1 JJB98_33100 PF13462 Thioredoxin JJB98_33130 PF02600 Disulfide bond formation protein DsbB JJB98_33150 PF01209 ubiE/COQ5 methyltransferase family JJB98_33165 PF04545 Sigma-70, region 4 JJB98_33165 PF04542 Sigma-70 region 2 JJB98_33180 PF05114 Protein of unknown function (DUF692) JJB98_33190 PF00916 Sulfate permease family JJB98_33190 PF01740 STAS domain JJB98_33195 PF02683 Cytochrome C biogenesis protein transmembrane region JJB98_33195 PF11412 Disulphide bond corrector protein DsbC JJB98_33220 PF01161 Phosphatidylethanolamine-binding protein JJB98_33225 PF13180 PDZ domain JJB98_33250 PF00923 Transaldolase/Fructose-6-phosphate aldolase JJB98_33265 PF01230 HIT domain JJB98_33270 PF02163 Peptidase family M50 JJB98_33270 PF00571 CBS domain JJB98_33305 PF07298 NnrU protein JJB98_33325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJB98_33325 PF08269 Cache domain JJB98_33335 PF01220 Dehydroquinase class II JJB98_33340 PF00155 Aminotransferase class I and II JJB98_33345 PF00512 His Kinase A (phospho-acceptor) domain JJB98_33345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_33345 PF00072 Response regulator receiver domain JJB98_33345 PF09456 RcsC Alpha-Beta-Loop (ABL) JJB98_33360 PF00072 Response regulator receiver domain JJB98_33360 PF00196 Bacterial regulatory proteins, luxR family JJB98_33365 PF01894 Uncharacterised protein family UPF0047 JJB98_33380 PF00119 ATP synthase A chain JJB98_33385 PF00137 ATP synthase subunit C JJB98_33390 PF00430 ATP synthase B/B' CF(0) JJB98_33395 PF00430 ATP synthase B/B' CF(0) JJB98_33405 PF13302 Acetyltransferase (GNAT) domain JJB98_33410 PF05193 Peptidase M16 inactive domain JJB98_33410 PF00675 Insulinase (Peptidase family M16) JJB98_33415 PF14821 Threonine synthase N terminus JJB98_33415 PF00291 Pyridoxal-phosphate dependent enzyme JJB98_33420 PF00196 Bacterial regulatory proteins, luxR family JJB98_33420 PF00072 Response regulator receiver domain JJB98_33425 PF05231 MASE1 JJB98_33425 PF07730 Histidine kinase JJB98_33425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJB98_33435 PF02104 SURF1 family JJB98_33445 PF00510 Cytochrome c oxidase subunit III JJB98_33450 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JJB98_33460 PF01040 UbiA prenyltransferase family JJB98_33465 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJB98_33470 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJB98_33470 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JJB98_33490 PF01523 Putative modulator of DNA gyrase JJB98_33495 PF10502 Signal peptidase, peptidase S26 JJB98_33510 PF04107 Glutamate-cysteine ligase family 2(GCS2) JJB98_33520 PF02798 Glutathione S-transferase, N-terminal domain JJB98_33520 PF00043 Glutathione S-transferase, C-terminal domain JJB98_33525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJB98_33525 PF00378 Enoyl-CoA hydratase/isomerase JJB98_33525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJB98_33530 PF02803 Thiolase, C-terminal domain JJB98_33530 PF00108 Thiolase, N-terminal domain