locus-tag	class	description
JJB98_00025	COG0730	response to heat
JJB98_00040	COG0697	spore germination
JJB98_00045	COG0583	DNA-binding transcription factor activity
JJB98_00055	COG0058	SHG alpha-glucan phosphorylase activity
JJB98_00065	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JJB98_00080	COG0745	RESPONSE REGULATOR receiver
JJB98_00085	COG2205	protein histidine kinase activity
JJB98_00090	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JJB98_00095	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJB98_00095	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJB98_00110	COG0481	GTPase activity
JJB98_00135	COG0154	amidase activity
JJB98_00140	COG1960	acyl-CoA dehydrogenase activity
JJB98_00145	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
JJB98_00150	COG0725	ABC transporter, periplasmic molybdate-binding protein
JJB98_00155	COG4149	molybdate abc transporter
JJB98_00160	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JJB98_00180	COG0024	Methionine aminopeptidase
JJB98_00195	COG2003	Belongs to the UPF0758 family
JJB98_00205	COG2345	Transcriptional regulator
JJB98_00225	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJB98_00230	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_00250	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JJB98_00255	COG1253	flavin adenine dinucleotide binding
JJB98_00260	COG0069	glutamate synthase activity
JJB98_00275	COG2130	NADP-dependent
JJB98_00330	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJB98_00335	COG0583	DNA-binding transcription factor activity
JJB98_00345	COG1024	Enoyl-CoA hydratase
JJB98_00360	COG1960	acyl-CoA dehydrogenase activity
JJB98_00365	COG0747	negative chemotaxis
JJB98_00370	COG3964	amidohydrolase
JJB98_00375	COG0583	DNA-binding transcription factor activity
JJB98_00400	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJB98_00415	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JJB98_00440	COG1960	acyl-CoA dehydrogenase activity
JJB98_00445	COG1024	Enoyl-CoA hydratase
JJB98_00460	COG1024	Enoyl-CoA hydratase
JJB98_00480	COG0477	Major facilitator Superfamily
JJB98_00485	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JJB98_00490	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JJB98_00495	COG1845	cytochrome c oxidase, subunit III
JJB98_00500	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JJB98_00515	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
JJB98_00525	COG1733	regulation of RNA biosynthetic process
JJB98_00535	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JJB98_00545	COG4581	dead DEAH box helicase
JJB98_00555	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JJB98_00560	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JJB98_00580	COG1902	pentaerythritol trinitrate reductase activity
JJB98_00605	COG0372	Belongs to the citrate synthase family
JJB98_00610	COG0372	Belongs to the citrate synthase family
JJB98_00625	COG4536	flavin adenine dinucleotide binding
JJB98_00630	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JJB98_00635	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JJB98_00645	COG4974	Belongs to the 'phage' integrase family
JJB98_00650	COG0825	malonyl-CoA metabolic process
JJB98_00655	COG3034	peptidoglycan biosynthetic process
JJB98_00660	COG0653	protein targeting
JJB98_00670	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
JJB98_00685	COG1040	competence protein
JJB98_00695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJB98_00715	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JJB98_00725	COG0527	aspartate kinase activity
JJB98_00735	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JJB98_00775	COG2890	protein-(glutamine-N5) methyltransferase activity
JJB98_00790	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJB98_00800	COG0697	spore germination
JJB98_00815	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
JJB98_00845	COG1522	sequence-specific DNA binding
JJB98_00850	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JJB98_00855	COG0514	ATP-dependent DNA helicase (RecQ)
JJB98_00870	COG2873	o-acetylhomoserine
JJB98_00875	COG0154	amidase activity
JJB98_00885	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JJB98_00890	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_00940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_00945	COG0601	transmembrane transport
JJB98_00950	COG0747	negative chemotaxis
JJB98_00965	COG1522	sequence-specific DNA binding
JJB98_00980	COG1012	belongs to the aldehyde dehydrogenase family
JJB98_01060	COG0270	DNA (cytosine-5-)-methyltransferase activity
JJB98_01115	COG0631	protein serine/threonine phosphatase activity
JJB98_01140	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
JJB98_01145	COG1877	trehalose-phosphatase activity
JJB98_01150	COG0477	Major facilitator Superfamily
JJB98_01185	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_01200	COG3813	Protein conserved in bacteria
JJB98_01210	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JJB98_01225	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_01265	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_01280	COG3586	endonuclease activity
JJB98_01285	COG3093	addiction module antidote protein HigA
JJB98_01300	COG5001	Diguanylate cyclase
JJB98_01320	COG2706	6-phosphogluconolactonase activity
JJB98_01345	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JJB98_01355	COG1696	Membrane protein involved in D-alanine export
JJB98_01365	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJB98_01395	COG4566	intracellular signal transduction
JJB98_01400	COG0784	Response regulator, receiver
JJB98_01400	COG4191	Histidine kinase
JJB98_01405	COG4566	intracellular signal transduction
JJB98_01415	COG2201	protein-glutamate methylesterase activity
JJB98_01435	COG0835	chemotaxis
JJB98_01440	COG2198	Histidine kinase
JJB98_01440	COG0784	Response regulator, receiver
JJB98_01440	COG0643	Histidine kinase
JJB98_01500	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JJB98_01505	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JJB98_01525	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JJB98_01540	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JJB98_01550	COG3609	addiction module antidote protein, CC2985 family
JJB98_01555	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JJB98_01560	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JJB98_01565	COG0799	negative regulation of ribosome biogenesis
JJB98_01570	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JJB98_01580	COG0793	Belongs to the peptidase S41A family
JJB98_01590	COG1051	belongs to the nudix hydrolase family
JJB98_01595	COG0494	nUDIX hydrolase
JJB98_01600	COG0459	protein refolding
JJB98_01605	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JJB98_01610	COG0438	transferase activity, transferring glycosyl groups
JJB98_01615	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JJB98_01620	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_01625	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_01635	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JJB98_01640	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JJB98_01645	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JJB98_01650	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JJB98_01655	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JJB98_01660	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JJB98_01670	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
JJB98_01685	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJB98_01690	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_01695	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJB98_01705	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JJB98_01715	COG0045	succinate-CoA ligase (ADP-forming) activity
JJB98_01720	COG0039	L-malate dehydrogenase activity
JJB98_01725	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JJB98_01735	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JJB98_01740	COG2755	lipolytic protein G-D-S-L family
JJB98_01745	COG1136	(ABC) transporter
JJB98_01750	COG0577	efflux transmembrane transporter activity
JJB98_01750	COG1136	(ABC) transporter
JJB98_01755	COG0670	Belongs to the BI1 family
JJB98_01775	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JJB98_01780	COG4133	protoheme IX ABC transporter activity
JJB98_01785	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJB98_01790	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJB98_01800	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJB98_01805	COG2917	probably involved in intracellular septation
JJB98_01810	COG0552	protein localization to endoplasmic reticulum
JJB98_01815	COG0564	pseudouridine synthase activity
JJB98_01825	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJB98_01830	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JJB98_01850	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JJB98_01855	COG0228	four-way junction DNA binding
JJB98_01860	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JJB98_01865	COG0336	Belongs to the RNA methyltransferase TrmD family
JJB98_01870	COG0335	large ribosomal subunit rRNA binding
JJB98_01875	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JJB98_01905	COG0066	3-isopropylmalate dehydratase activity
JJB98_01920	COG0546	phosphoglycolate phosphatase activity
JJB98_01925	COG2301	Belongs to the HpcH HpaI aldolase family
JJB98_01930	COG0288	reversible hydration of carbon dioxide
JJB98_01935	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JJB98_01950	COG0473	3-isopropylmalate dehydrogenase activity
JJB98_01960	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JJB98_01965	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
JJB98_01980	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_01990	COG0730	response to heat
JJB98_02015	COG4191	Histidine kinase
JJB98_02015	COG0784	Response regulator, receiver
JJB98_02040	COG0137	argininosuccinate synthase activity
JJB98_02045	COG0671	phosphoesterase, PA-phosphatase related
JJB98_02055	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JJB98_02065	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_02070	COG3321	synthase
JJB98_02070	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_02070	COG0604	alcohol dehydrogenase
JJB98_02080	COG2154	pterin-4-alpha-carbinolamine dehydratase
JJB98_02095	COG0784	Response regulator, receiver
JJB98_02110	COG1217	gtp-binding protein TYPA
JJB98_02120	COG3011	Protein conserved in bacteria
JJB98_02140	COG1247	-acetyltransferase
JJB98_02145	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JJB98_02150	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JJB98_02170	COG1024	Enoyl-CoA hydratase
JJB98_02175	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JJB98_02180	COG4221	oxidoreductase activity
JJB98_02205	COG2814	Major facilitator Superfamily
JJB98_02250	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JJB98_02255	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JJB98_02285	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJB98_02290	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_02310	COG0175	sulfate reduction
JJB98_02335	COG0138	bifunctional purine biosynthesis protein purh
JJB98_02345	COG0405	Gamma-glutamyltransferase
JJB98_02350	COG2814	Major facilitator Superfamily
JJB98_02365	COG0534	Mate efflux family protein
JJB98_02375	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JJB98_02390	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJB98_02400	COG3118	belongs to the thioredoxin family
JJB98_02425	COG2835	tetraacyldisaccharide 4'-kinase activity
JJB98_02430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_02435	COG1946	Acyl-CoA thioesterase
JJB98_02460	COG0347	Belongs to the P(II) protein family
JJB98_02465	COG0004	ammonium transporteR
JJB98_02470	COG0640	Transcriptional regulator
JJB98_02480	COG0740	serine-type endopeptidase activity
JJB98_02485	COG0347	Belongs to the P(II) protein family
JJB98_02490	COG0004	ammonium transporteR
JJB98_02500	COG0436	Aminotransferase
JJB98_02505	COG1674	ftsk spoiiie
JJB98_02510	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JJB98_02525	COG0745	RESPONSE REGULATOR receiver
JJB98_02540	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JJB98_02545	COG3706	GGDEF domain
JJB98_02545	COG2203	Gaf domain
JJB98_02545	COG4251	negative regulation of phosphorylation
JJB98_02545	COG5001	Diguanylate cyclase
JJB98_02555	COG0495	leucyl-tRNA aminoacylation
JJB98_02580	COG0357	Ribosomal RNA small subunit methyltransferase G
JJB98_02585	COG0445	tRNA wobble uridine modification
JJB98_02590	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JJB98_02595	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JJB98_02600	COG1981	membrane
JJB98_02605	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JJB98_02610	COG0424	maF-like protein
JJB98_02615	COG0237	dephospho-CoA kinase activity
JJB98_02620	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJB98_02625	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JJB98_02635	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JJB98_02650	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JJB98_02660	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JJB98_02665	COG0131	Imidazoleglycerol-phosphate dehydratase
JJB98_02675	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JJB98_02680	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JJB98_02685	COG0107	imidazoleglycerol-phosphate synthase activity
JJB98_02690	COG0140	phosphoribosyl-ATP diphosphatase activity
JJB98_02695	COG1072	(Pantothenic acid kinase))
JJB98_02705	COG2205	protein histidine kinase activity
JJB98_02705	COG0784	Response regulator, receiver
JJB98_02705	COG5002	protein histidine kinase activity
JJB98_02740	COG4964	Belongs to the GSP D family
JJB98_02750	COG0189	ligase activity
JJB98_02755	COG0792	nuclease activity
JJB98_02760	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JJB98_02770	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJB98_02775	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JJB98_02780	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JJB98_02785	COG1420	regulation of RNA biosynthetic process
JJB98_02790	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JJB98_02795	COG1335	isochorismatase
JJB98_02805	COG0443	Heat shock 70 kDa protein
JJB98_02810	COG0484	heat shock protein binding
JJB98_02815	COG3963	phosphatidate phosphatase activity
JJB98_02820	COG0431	NADPH-dependent FMN reductase
JJB98_02825	COG0284	orotidine-5'-phosphate decarboxylase activity
JJB98_02835	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JJB98_02840	COG0588	phosphoglycerate mutase activity
JJB98_02845	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JJB98_02855	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JJB98_02870	COG1937	Protein conserved in bacteria
JJB98_02890	COG0072	phenylalanine-tRNA ligase activity
JJB98_02890	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJB98_02895	COG2852	Protein conserved in bacteria
JJB98_02900	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JJB98_02905	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JJB98_02910	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JJB98_02915	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JJB98_02935	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JJB98_02945	COG1968	undecaprenyl-diphosphatase activity
JJB98_02985	COG4191	Histidine kinase
JJB98_02985	COG0784	Response regulator, receiver
JJB98_03040	COG2814	Major facilitator Superfamily
JJB98_03055	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JJB98_03060	COG1137	ATPase activity
JJB98_03065	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JJB98_03070	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JJB98_03075	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJB98_03090	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_03095	COG3842	ATPase activity
JJB98_03100	COG0395	ABC-type sugar transport system, permease component
JJB98_03105	COG1175	transmembrane transport
JJB98_03120	COG1764	response to oxidative stress
JJB98_03125	COG1846	Transcriptional regulator
JJB98_03145	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JJB98_03150	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JJB98_03155	COG0539	negative regulation of cytoplasmic translation
JJB98_03160	COG0616	signal peptide processing
JJB98_03165	COG0776	regulation of translation
JJB98_03175	COG0135	phosphoribosylanthranilate isomerase activity
JJB98_03180	COG0133	tryptophan synthase activity
JJB98_03185	COG0159	tryptophan synthase activity
JJB98_03190	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JJB98_03200	COG1793	dna ligase
JJB98_03220	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JJB98_03230	COG3178	'Phosphotransferase
JJB98_03235	COG2205	protein histidine kinase activity
JJB98_03240	COG0756	dUTP diphosphatase activity
JJB98_03245	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JJB98_03250	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JJB98_03255	COG2226	methyltransferase
JJB98_03260	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JJB98_03280	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJB98_03300	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJB98_03310	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JJB98_03335	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
JJB98_03340	COG1185	polyribonucleotide nucleotidyltransferase activity
JJB98_03345	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JJB98_03350	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JJB98_03355	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JJB98_03360	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JJB98_03375	COG0779	Required for maturation of 30S ribosomal subunits
JJB98_03385	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JJB98_03395	COG1396	sequence-specific DNA binding
JJB98_03400	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JJB98_03405	COG1253	flavin adenine dinucleotide binding
JJB98_03410	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JJB98_03415	COG1702	phosphate starvation-inducible protein PhoH
JJB98_03420	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJB98_03425	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJB98_03455	COG0180	Tryptophanyl-tRNA synthetase
JJB98_03465	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJB98_03470	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_03495	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JJB98_03500	COG1741	Belongs to the pirin family
JJB98_03540	COG0534	Mate efflux family protein
JJB98_03545	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JJB98_03560	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JJB98_03575	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JJB98_03580	COG0268	Binds directly to 16S ribosomal RNA
JJB98_03605	COG0412	Dienelactone hydrolase
JJB98_03650	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_03665	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JJB98_03695	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJB98_03710	COG2124	cytochrome p450
JJB98_03710	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JJB98_03765	COG0443	Heat shock 70 kDa protein
JJB98_03770	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JJB98_03795	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JJB98_03810	COG4974	Belongs to the 'phage' integrase family
JJB98_03815	COG4974	Belongs to the 'phage' integrase family
JJB98_03820	COG4974	Belongs to the 'phage' integrase family
JJB98_03845	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJB98_03865	COG0179	Fumarylacetoacetate (FAA) hydrolase
JJB98_03880	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_03890	COG0583	DNA-binding transcription factor activity
JJB98_03900	COG3618	amidohydrolase
JJB98_03910	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_03945	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JJB98_03985	COG2261	transglycosylase associated protein
JJB98_04000	COG1295	ribonuclease BN
JJB98_04005	COG0583	DNA-binding transcription factor activity
JJB98_04110	COG3706	GGDEF domain
JJB98_04115	COG5001	Diguanylate cyclase
JJB98_04120	COG5001	Diguanylate cyclase
JJB98_04130	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_04145	COG0477	Major facilitator Superfamily
JJB98_04165	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJB98_04170	COG0366	Alpha amylase catalytic
JJB98_04185	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
JJB98_04195	COG1131	(ABC) transporter
JJB98_04215	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JJB98_04240	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JJB98_04255	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JJB98_04260	COG0183	Belongs to the thiolase family
JJB98_04265	COG3485	protocatechuate 3,4-dioxygenase
JJB98_04270	COG3485	protocatechuate 3,4-dioxygenase
JJB98_04275	COG0840	transmembrane signaling receptor activity
JJB98_04285	COG2814	Major facilitator Superfamily
JJB98_04300	COG0735	belongs to the Fur family
JJB98_04310	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JJB98_04325	COG2175	clavaminate synthase activity
JJB98_04340	COG0025	NhaP-type Na H and K H
JJB98_04365	COG0142	geranyltranstransferase activity
JJB98_04370	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JJB98_04375	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JJB98_04390	COG3300	MHYT domain
JJB98_04390	COG5001	Diguanylate cyclase
JJB98_04395	COG5001	Diguanylate cyclase
JJB98_04405	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JJB98_04415	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJB98_04420	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JJB98_04425	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
JJB98_04440	COG2072	flavoprotein involved in K transport
JJB98_04475	COG1960	acyl-CoA dehydrogenase activity
JJB98_04480	COG1960	acyl-CoA dehydrogenase activity
JJB98_04495	COG3246	L-lysine catabolic process to acetate
JJB98_04500	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_04510	COG4608	Belongs to the ABC transporter superfamily
JJB98_04515	COG0444	Belongs to the ABC transporter superfamily
JJB98_04520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_04525	COG0601	transmembrane transport
JJB98_04550	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_04560	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JJB98_04580	COG2271	Major facilitator Superfamily
JJB98_04590	COG2271	Major facilitator Superfamily
JJB98_04610	COG0737	Belongs to the 5'-nucleotidase family
JJB98_04645	COG1505	serine-type exopeptidase activity
JJB98_04650	COG2814	Major facilitator Superfamily
JJB98_04660	COG2514	catechol 2,3-dioxygenase activity
JJB98_04670	COG1960	acyl-CoA dehydrogenase activity
JJB98_04675	COG1960	acyl-CoA dehydrogenase activity
JJB98_04680	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJB98_04705	COG1595	DNA-templated transcription, initiation
JJB98_04715	COG3437	response regulator, receiver
JJB98_04715	COG0784	Response regulator, receiver
JJB98_04720	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJB98_04720	COG4191	Histidine kinase
JJB98_04725	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JJB98_04760	COG0747	negative chemotaxis
JJB98_04765	COG0601	transmembrane transport
JJB98_04770	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_04775	COG4172	Belongs to the ABC transporter superfamily
JJB98_04795	COG1802	Transcriptional regulator
JJB98_04810	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_04820	COG2124	cytochrome p450
JJB98_04835	COG1252	NADH dehydrogenase
JJB98_04865	COG0559	Belongs to the binding-protein-dependent transport system permease family
JJB98_04875	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JJB98_04880	COG0583	DNA-binding transcription factor activity
JJB98_04890	COG2197	response regulator
JJB98_04895	COG3916	Acyl-homoserine-lactone synthase
JJB98_04930	COG4638	Rieske (2fe-2S)
JJB98_04935	COG1414	Transcriptional regulator
JJB98_04955	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JJB98_04960	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJB98_05005	COG5002	protein histidine kinase activity
JJB98_05010	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JJB98_05015	COG0573	inorganic phosphate transmembrane transporter activity
JJB98_05020	COG0581	inorganic phosphate transmembrane transporter activity
JJB98_05025	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JJB98_05030	COG0704	Plays a role in the regulation of phosphate uptake
JJB98_05035	COG0745	RESPONSE REGULATOR receiver
JJB98_05045	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JJB98_05050	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JJB98_05060	COG2967	ApaG domain
JJB98_05085	COG0717	Belongs to the dCTP deaminase family
JJB98_05090	COG4191	Histidine kinase
JJB98_05120	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JJB98_05150	COG1070	Carbohydrate kinase
JJB98_05155	COG2115	Belongs to the xylose isomerase family
JJB98_05160	COG1129	ABC transporter
JJB98_05165	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJB98_05210	COG1234	tRNA 3'-trailer cleavage
JJB98_05220	COG0167	dihydroorotate dehydrogenase activity
JJB98_05255	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JJB98_05260	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
JJB98_05270	COG1999	signal sequence binding
JJB98_05295	COG0251	oxidation-reduction process
JJB98_05305	COG1201	RNA secondary structure unwinding
JJB98_05325	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JJB98_05330	COG0625	glutathione transferase activity
JJB98_05335	COG1280	lysine exporter protein (LysE YggA)
JJB98_05340	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJB98_05340	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJB98_05350	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JJB98_05355	COG1643	Atp-dependent helicase
JJB98_05360	COG3577	Aspartyl protease
JJB98_05365	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JJB98_05375	COG1522	sequence-specific DNA binding
JJB98_05380	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJB98_05400	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JJB98_05405	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JJB98_05410	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JJB98_05420	COG2223	nitrite transmembrane transporter activity
JJB98_05425	COG1322	Protein conserved in bacteria
JJB98_05430	COG0242	peptide deformylase activity
JJB98_05435	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JJB98_05440	COG0101	tRNA pseudouridine synthase activity
JJB98_05445	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JJB98_05450	COG2171	N-acyltransferase activity
JJB98_05465	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JJB98_05475	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JJB98_05480	COG0706	membrane insertase activity
JJB98_05485	COG0594	ribonuclease P activity
JJB98_05490	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JJB98_05495	COG3852	Histidine kinase
JJB98_05505	COG0720	synthase
JJB98_05525	COG0583	DNA-binding transcription factor activity
JJB98_05545	COG0346	lactoylglutathione lyase activity
JJB98_05580	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_05595	COG1032	radical SAM domain protein
JJB98_05605	COG1802	Transcriptional regulator
JJB98_05610	COG0277	FAD linked oxidase domain protein
JJB98_05615	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_05620	COG4774	siderophore transport
JJB98_05635	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJB98_05640	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JJB98_05650	COG1024	Enoyl-CoA hydratase
JJB98_05675	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
JJB98_05680	COG3454	Phosphonate metabolism
JJB98_05690	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JJB98_05700	COG3639	organic phosphonate transmembrane transporter activity
JJB98_05710	COG2188	Transcriptional regulator
JJB98_05715	COG3624	Phosphonate C-P lyase system protein PhnG
JJB98_05720	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
JJB98_05725	COG3626	phosphonate metabolism
JJB98_05730	COG3627	carbon phosphorus lyase activity
JJB98_05735	COG4107	phosphonate C-P lyase system protein PhnK
JJB98_05740	COG4778	phosphonate C-P lyase system protein PhnL
JJB98_05745	COG3454	Phosphonate metabolism
JJB98_05750	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
JJB98_05760	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_05770	COG2267	carboxylic ester hydrolase activity
JJB98_05815	COG3181	Tripartite tricarboxylate transporter family receptor
JJB98_05820	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JJB98_05825	COG0179	Fumarylacetoacetate (FAA) hydrolase
JJB98_05830	COG3971	2-oxopent-4-enoate hydratase activity
JJB98_05845	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_05860	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJB98_05925	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JJB98_05930	COG5328	Belongs to the UPF0262 family
JJB98_05935	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JJB98_05940	COG0424	maF-like protein
JJB98_05945	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JJB98_05975	COG1476	TRANSCRIPTIONal
JJB98_06035	COG3300	MHYT domain
JJB98_06035	COG5001	Diguanylate cyclase
JJB98_06060	COG1335	isochorismatase
JJB98_06080	COG0667	Aldo Keto reductase
JJB98_06110	COG2358	TRAP transporter, solute receptor (TAXI family
JJB98_06125	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_06160	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JJB98_06165	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JJB98_06170	COG0328	RNA-DNA hybrid ribonuclease activity
JJB98_06175	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JJB98_06175	COG0678	peroxiredoxin activity
JJB98_06185	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_06190	COG1686	Belongs to the peptidase S11 family
JJB98_06195	COG1132	(ABC) transporter
JJB98_06205	COG0140	phosphoribosyl-ATP diphosphatase activity
JJB98_06210	COG1238	metal cluster binding
JJB98_06220	COG1027	Aspartate ammonia-lyase
JJB98_06235	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_06265	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JJB98_06270	COG2309	aminopeptidase activity
JJB98_06360	COG0154	amidase activity
JJB98_06370	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
JJB98_06375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_06380	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JJB98_06390	COG1058	Belongs to the CinA family
JJB98_06390	COG1546	Belongs to the CinA family
JJB98_06410	COG0583	DNA-binding transcription factor activity
JJB98_06425	COG1024	Enoyl-CoA hydratase
JJB98_06440	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
JJB98_06460	COG0154	amidase activity
JJB98_06475	COG2267	carboxylic ester hydrolase activity
JJB98_06505	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_06545	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJB98_06550	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JJB98_06565	COG2378	regulation of single-species biofilm formation
JJB98_06575	COG1024	Enoyl-CoA hydratase
JJB98_06580	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_06635	COG0300	oxidoreductase activity
JJB98_06635	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_06635	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JJB98_06635	COG3321	synthase
JJB98_06635	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_06640	COG1024	Enoyl-CoA hydratase
JJB98_06660	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JJB98_06685	COG0583	DNA-binding transcription factor activity
JJB98_06745	COG0559	Belongs to the binding-protein-dependent transport system permease family
JJB98_06770	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_06775	COG1960	acyl-CoA dehydrogenase activity
JJB98_06785	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_06790	COG2852	Protein conserved in bacteria
JJB98_06795	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JJB98_06825	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_06830	COG1605	Chorismate mutase
JJB98_06830	COG0077	Prephenate dehydratase
JJB98_06835	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JJB98_06840	COG3474	cytochrome
JJB98_06845	COG4166	transmembrane transport
JJB98_06850	COG4166	transmembrane transport
JJB98_06855	COG4174	ABC transporter (Permease)
JJB98_06860	COG4239	(ABC) transporter, permease
JJB98_06865	COG4172	Belongs to the ABC transporter superfamily
JJB98_06870	COG0791	NLP P60 protein
JJB98_06875	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJB98_06915	COG4964	Belongs to the GSP D family
JJB98_06950	COG1278	Cold shock
JJB98_06955	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JJB98_06960	COG0513	Belongs to the DEAD box helicase family
JJB98_06970	COG0559	Belongs to the binding-protein-dependent transport system permease family
JJB98_06990	COG0829	nickel cation binding
JJB98_06995	COG0831	urea catabolic process
JJB98_07000	COG0832	Belongs to the urease beta subunit family
JJB98_07005	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JJB98_07010	COG0804	urea catabolic process
JJB98_07020	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
JJB98_07025	COG0830	nickel cation binding
JJB98_07030	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JJB98_07065	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_07080	COG3237	CsbD-like
JJB98_07085	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JJB98_07095	COG0175	sulfate reduction
JJB98_07100	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JJB98_07100	COG1648	precorrin-2 dehydrogenase activity
JJB98_07110	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJB98_07120	COG0175	sulfate reduction
JJB98_07135	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_07140	COG0730	response to heat
JJB98_07155	COG1678	Uncharacterized ACR, COG1678
JJB98_07170	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_07175	COG3237	CsbD-like
JJB98_07185	COG2951	lytic endotransglycosylase activity
JJB98_07190	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JJB98_07195	COG2203	Gaf domain
JJB98_07195	COG3706	GGDEF domain
JJB98_07195	COG4251	negative regulation of phosphorylation
JJB98_07195	COG5001	Diguanylate cyclase
JJB98_07210	COG0604	alcohol dehydrogenase
JJB98_07210	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_07210	COG3321	synthase
JJB98_07225	COG0254	rRNA binding
JJB98_07230	COG1132	(ABC) transporter
JJB98_07255	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_07260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_07265	COG0483	inositol monophosphate 1-phosphatase activity
JJB98_07280	COG3588	fructose-bisphosphate aldolase
JJB98_07290	COG0126	phosphoglycerate kinase activity
JJB98_07325	COG1692	metallophosphoesterase
JJB98_07345	COG4191	Histidine kinase
JJB98_07360	COG0217	transcriptional regulatory protein
JJB98_07365	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JJB98_07370	COG0632	four-way junction helicase activity
JJB98_07375	COG2255	four-way junction helicase activity
JJB98_07380	COG1408	metallophosphoesterase
JJB98_07385	COG0824	Thioesterase
JJB98_07395	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JJB98_07395	COG0519	Catalyzes the synthesis of GMP from XMP
JJB98_07410	COG3842	ATPase activity
JJB98_07415	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJB98_07420	COG1177	transmembrane transport
JJB98_07450	COG1301	dicarboxylic acid transport
JJB98_07450	COG1301	dicarboxylic acid transport
JJB98_07455	COG2233	PERMEase
JJB98_07465	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JJB98_07480	COG0625	glutathione transferase activity
JJB98_07485	COG1309	transcriptional regulator
JJB98_07490	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJB98_07495	COG3795	YCII-related domain
JJB98_07500	COG4941	Belongs to the sigma-70 factor family
JJB98_07520	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_07525	COG3795	YCII-related domain
JJB98_07545	COG0793	Belongs to the peptidase S41A family
JJB98_07575	COG0823	Involved in the tonB-independent uptake of proteins
JJB98_07580	COG5001	Diguanylate cyclase
JJB98_07590	COG2885	chlorophyll binding
JJB98_07600	COG0037	tRNA processing
JJB98_07605	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JJB98_07620	COG0463	Glycosyl transferase, family 2
JJB98_07645	COG1309	transcriptional regulator
JJB98_07650	COG0469	pyruvate kinase activity
JJB98_07665	COG3750	Belongs to the UPF0335 family
JJB98_07675	COG2989	Protein conserved in bacteria
JJB98_07680	COG2204	response regulator
JJB98_07730	COG0387	Pfam Sodium calcium exchanger
JJB98_07750	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JJB98_07755	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JJB98_07760	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JJB98_07765	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JJB98_07770	COG3447	MASE1 domain protein
JJB98_07770	COG5001	Diguanylate cyclase
JJB98_07770	COG5002	protein histidine kinase activity
JJB98_07800	COG0579	oxidoreductase
JJB98_07805	COG5001	Diguanylate cyclase
JJB98_07805	COG3300	MHYT domain
JJB98_07815	COG3842	ATPase activity
JJB98_07820	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJB98_07825	COG1177	transmembrane transport
JJB98_07835	COG1175	transmembrane transport
JJB98_07845	COG0583	DNA-binding transcription factor activity
JJB98_07850	COG2828	Protein conserved in bacteria
JJB98_07870	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJB98_07875	COG0840	transmembrane signaling receptor activity
JJB98_07875	COG0840	transmembrane signaling receptor activity
JJB98_07895	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JJB98_07940	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JJB98_07945	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JJB98_07950	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JJB98_07955	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_07970	COG1073	alpha beta
JJB98_07990	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_08005	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JJB98_08015	COG2124	cytochrome p450
JJB98_08020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JJB98_08030	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JJB98_08035	COG2204	response regulator
JJB98_08040	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JJB98_08050	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JJB98_08055	COG1766	The M ring may be actively involved in energy transduction
JJB98_08075	COG0482	sulfurtransferase activity
JJB98_08095	COG3415	Transposase
JJB98_08095	COG2801	Transposase and inactivated derivatives
JJB98_08155	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_08200	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JJB98_08205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_08215	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JJB98_08220	COG2409	Drug exporters of the RND superfamily
JJB98_08230	COG5487	UPF0391 membrane protein
JJB98_08245	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_08255	COG1653	transport
JJB98_08265	COG0395	ABC-type sugar transport system, permease component
JJB98_08270	COG1063	alcohol dehydrogenase
JJB98_08275	COG3842	ATPase activity
JJB98_08280	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJB98_08300	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_08315	COG0683	leucine binding
JJB98_08325	COG0411	ABC transporter
JJB98_08355	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJB98_08370	COG1794	racemase activity, acting on amino acids and derivatives
JJB98_08375	COG0028	Belongs to the TPP enzyme family
JJB98_08380	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_08395	COG1414	Transcriptional regulator
JJB98_08400	COG1053	succinate dehydrogenase
JJB98_08410	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_08415	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_08445	COG2030	dehydratase
JJB98_08455	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JJB98_08475	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_08480	COG0427	acetyl-CoA hydrolase
JJB98_08495	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JJB98_08520	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JJB98_08530	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JJB98_08535	COG0366	Alpha amylase catalytic
JJB98_08540	COG0366	Alpha amylase catalytic
JJB98_08545	COG1640	4-alpha-glucanotransferase
JJB98_08550	COG3387	PFAM Glycoside hydrolase 15-related
JJB98_08560	COG3265	gluconokinase activity
JJB98_08565	COG0363	glucosamine-6-phosphate deaminase activity
JJB98_08570	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JJB98_08575	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JJB98_08580	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JJB98_08590	COG2766	serine protein kinase
JJB98_08595	COG2718	Belongs to the UPF0229 family
JJB98_08600	COG2719	SpoVR family
JJB98_08645	COG1013	pyruvate-flavodoxin oxidoreductase activity
JJB98_08650	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JJB98_08650	COG0674	pyruvate-flavodoxin oxidoreductase activity
JJB98_08670	COG0535	radical SAM domain protein
JJB98_08675	COG0535	radical SAM domain protein
JJB98_08680	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
JJB98_08685	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JJB98_08700	COG0154	amidase activity
JJB98_08705	COG0386	Belongs to the glutathione peroxidase family
JJB98_08715	COG4948	Mandelate Racemase Muconate Lactonizing
JJB98_08735	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JJB98_08745	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JJB98_08760	COG0475	glutathione-regulated potassium exporter activity
JJB98_08800	COG4948	Mandelate Racemase Muconate Lactonizing
JJB98_08805	COG2207	Transcriptional regulator
JJB98_08805	COG3708	Transcriptional regulator
JJB98_08820	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JJB98_08840	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JJB98_08860	COG2897	thiosulfate sulfurtransferase activity
JJB98_08870	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_08875	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJB98_08920	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JJB98_08945	COG2204	response regulator
JJB98_08950	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_08975	COG0625	glutathione transferase activity
JJB98_08985	COG3668	Plasmid stabilization system
JJB98_09000	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JJB98_09010	COG2022	thiamine diphosphate biosynthetic process
JJB98_09060	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJB98_09070	COG3842	ATPase activity
JJB98_09105	COG1388	LysM domain
JJB98_09105	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_09130	COG0688	phosphatidylethanolamine metabolic process
JJB98_09165	COG1309	transcriptional regulator
JJB98_09180	COG5265	(ABC) transporter
JJB98_09195	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJB98_09215	COG3795	YCII-related domain
JJB98_09220	COG4941	Belongs to the sigma-70 factor family
JJB98_09225	COG3023	N-Acetylmuramoyl-L-alanine amidase
JJB98_09230	COG0275	rRNA processing
JJB98_09245	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JJB98_09250	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JJB98_09255	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JJB98_09260	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JJB98_09275	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JJB98_09280	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JJB98_09285	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JJB98_09290	COG1181	Belongs to the D-alanine--D-alanine ligase family
JJB98_09295	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JJB98_09300	COG0849	cell division
JJB98_09305	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JJB98_09315	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJB98_09325	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JJB98_09335	COG0006	proline dipeptidase activity
JJB98_09345	COG2264	protein methyltransferase activity
JJB98_09385	COG0584	glycerophosphoryl diester phosphodiesterase
JJB98_09395	COG0842	Transport permease protein
JJB98_09400	COG1131	(ABC) transporter
JJB98_09420	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
JJB98_09465	COG0210	DNA helicase
JJB98_09470	COG5487	UPF0391 membrane protein
JJB98_09480	COG0277	FAD linked oxidase domain protein
JJB98_09495	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJB98_09505	COG5001	Diguanylate cyclase
JJB98_09505	COG3300	MHYT domain
JJB98_09510	COG2271	Major facilitator Superfamily
JJB98_09515	COG2199	diguanylate cyclase activity
JJB98_09515	COG2202	Pas domain
JJB98_09515	COG2200	EAL domain
JJB98_09540	COG1278	Cold shock
JJB98_09545	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JJB98_09565	COG1309	transcriptional regulator
JJB98_09570	COG2124	cytochrome p450
JJB98_09595	COG5001	Diguanylate cyclase
JJB98_09620	COG0114	fumarate hydratase activity
JJB98_09650	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JJB98_09665	COG0330	HflC and HflK could
JJB98_09670	COG0330	HflC and HflK could
JJB98_09680	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_09690	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JJB98_09695	COG0028	Belongs to the TPP enzyme family
JJB98_09700	COG0440	acetolactate synthase activity
JJB98_09705	COG2813	Specifically methylates the guanine in position
JJB98_09720	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JJB98_09725	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_09755	COG1174	glycine betaine transport
JJB98_09760	COG0517	IMP dehydrogenase activity
JJB98_09760	COG1125	glycine betaine transport
JJB98_09770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_09810	COG2326	polyphosphate kinase activity
JJB98_09820	COG0281	malic enzyme
JJB98_09825	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JJB98_09845	COG2072	flavoprotein involved in K transport
JJB98_09870	COG4095	Psort location CytoplasmicMembrane, score
JJB98_09875	COG0297	glycogen (starch) synthase activity
JJB98_09880	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JJB98_09890	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JJB98_09935	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JJB98_09970	COG4974	Belongs to the 'phage' integrase family
JJB98_09990	COG2801	Transposase and inactivated derivatives
JJB98_10110	COG0582	viral genome integration into host DNA
JJB98_10150	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_10155	COG0746	molybdenum cofactor guanylyltransferase activity
JJB98_10165	COG1763	Mo-molybdopterin cofactor biosynthetic process
JJB98_10190	COG3383	formate dehydrogenase (NAD+) activity
JJB98_10195	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JJB98_10200	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJB98_10205	COG1131	(ABC) transporter
JJB98_10235	COG0431	NADPH-dependent FMN reductase
JJB98_10235	COG1053	succinate dehydrogenase
JJB98_10235	COG3976	FMN-binding domain protein
JJB98_10245	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JJB98_10265	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
JJB98_10285	COG0745	RESPONSE REGULATOR receiver
JJB98_10290	COG0643	Histidine kinase
JJB98_10290	COG2198	Histidine kinase
JJB98_10295	COG0835	chemotaxis
JJB98_10300	COG0840	transmembrane signaling receptor activity
JJB98_10305	COG0835	chemotaxis
JJB98_10310	COG0840	transmembrane signaling receptor activity
JJB98_10320	COG2201	protein-glutamate methylesterase activity
JJB98_10350	COG2771	luxR family
JJB98_10350	COG2200	EAL domain
JJB98_10395	COG2274	protein secretion by the type I secretion system
JJB98_10425	COG4964	Belongs to the GSP D family
JJB98_10460	COG0489	protein tyrosine kinase activity
JJB98_10545	COG0457	Tetratricopeptide repeat
JJB98_10555	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JJB98_10560	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JJB98_10610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_10620	COG1215	transferase activity, transferring glycosyl groups
JJB98_10640	COG2244	polysaccharide biosynthetic process
JJB98_10660	COG1215	transferase activity, transferring glycosyl groups
JJB98_10665	COG0438	transferase activity, transferring glycosyl groups
JJB98_10670	COG1215	transferase activity, transferring glycosyl groups
JJB98_10690	COG0463	Glycosyl transferase, family 2
JJB98_10695	COG1132	(ABC) transporter
JJB98_10700	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
JJB98_10700	COG2273	Hydrolase Family 16
JJB98_10785	COG5001	Diguanylate cyclase
JJB98_10785	COG3300	MHYT domain
JJB98_10815	COG0181	hydroxymethylbilane synthase activity
JJB98_10820	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JJB98_10830	COG5001	Diguanylate cyclase
JJB98_10830	COG2203	Gaf domain
JJB98_10830	COG4251	negative regulation of phosphorylation
JJB98_10830	COG3706	GGDEF domain
JJB98_10835	COG2900	Belongs to the SlyX family
JJB98_10840	COG1054	Belongs to the UPF0176 family
JJB98_10845	COG0405	Gamma-glutamyltransferase
JJB98_10850	COG2080	2 iron, 2 sulfur cluster binding
JJB98_10855	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JJB98_10860	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JJB98_10870	COG3237	CsbD-like
JJB98_10915	COG3214	Protein conserved in bacteria
JJB98_10940	COG1309	transcriptional regulator
JJB98_10950	COG1960	acyl-CoA dehydrogenase activity
JJB98_10955	COG0183	Belongs to the thiolase family
JJB98_10965	COG1607	acyl-coa hydrolase
JJB98_10980	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJB98_10985	COG1349	DNA-binding transcription factor activity
JJB98_11005	COG3842	ATPase activity
JJB98_11020	COG0395	ABC-type sugar transport system, permease component
JJB98_11035	COG1902	pentaerythritol trinitrate reductase activity
JJB98_11050	COG0501	Belongs to the peptidase M48B family
JJB98_11100	COG0494	nUDIX hydrolase
JJB98_11125	COG4771	TonB-dependent receptor
JJB98_11150	COG0714	Associated with various cellular activities
JJB98_11170	COG0617	tRNA 3'-terminal CCA addition
JJB98_11180	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JJB98_11185	COG0784	Response regulator, receiver
JJB98_11185	COG4191	Histidine kinase
JJB98_11210	COG0408	coproporphyrinogen oxidase activity
JJB98_11215	COG0602	queuosine metabolic process
JJB98_11220	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JJB98_11225	COG0723	plastoquinol--plastocyanin reductase activity
JJB98_11230	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JJB98_11230	COG2857	Cytochrome c1
JJB98_11245	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JJB98_11270	COG1704	LemA family
JJB98_11280	COG1196	nuclear chromosome segregation
JJB98_11285	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JJB98_11295	COG1194	a g-specific adenine glycosylase
JJB98_11310	COG0625	glutathione transferase activity
JJB98_11325	COG0625	glutathione transferase activity
JJB98_11335	COG2189	Belongs to the N(4) N(6)-methyltransferase family
JJB98_11340	COG2321	neutral zinc metallopeptidase
JJB98_11345	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJB98_11350	COG1846	Transcriptional regulator
JJB98_11350	COG0456	acetyltransferase
JJB98_11370	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
JJB98_11385	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JJB98_11395	COG1573	uracil-dna glycosylase
JJB98_11410	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JJB98_11420	COG1280	lysine exporter protein (LysE YggA)
JJB98_11425	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJB98_11435	COG0142	geranyltranstransferase activity
JJB98_11445	COG2890	protein-(glutamine-N5) methyltransferase activity
JJB98_11460	COG0752	glycyl-tRNA synthetase alpha subunit
JJB98_11465	COG0751	glycine-tRNA ligase activity
JJB98_11480	COG0574	Belongs to the PEP-utilizing enzyme family
JJB98_11480	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JJB98_11495	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JJB98_11500	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JJB98_11510	COG0604	alcohol dehydrogenase
JJB98_11550	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
JJB98_11555	COG0519	Catalyzes the synthesis of GMP from XMP
JJB98_11560	COG0354	folic acid binding
JJB98_11565	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JJB98_11575	COG1595	DNA-templated transcription, initiation
JJB98_11610	COG2135	peptidase activity
JJB98_11625	COG0494	nUDIX hydrolase
JJB98_11635	COG0277	FAD linked oxidase domain protein
JJB98_11640	COG0009	L-threonylcarbamoyladenylate synthase
JJB98_11665	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JJB98_11800	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JJB98_11860	COG5489	Protein of unknown function (DUF736)
JJB98_11900	COG0681	Belongs to the peptidase S26 family
JJB98_11905	COG0739	heme binding
JJB98_11905	COG1196	nuclear chromosome segregation
JJB98_11905	COG0741	lytic transglycosylase activity
JJB98_11935	COG1024	Enoyl-CoA hydratase
JJB98_11945	COG1024	Enoyl-CoA hydratase
JJB98_11955	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_11970	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_11980	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJB98_11985	COG1024	Enoyl-CoA hydratase
JJB98_12000	COG4962	Type ii secretion system protein e
JJB98_12005	COG3838	Conjugal transfer protein Trbc
JJB98_12015	COG3451	type IV secretory pathway VirB4
JJB98_12030	COG3846	protein secretion by the type IV secretion system
JJB98_12060	COG3916	Acyl-homoserine-lactone synthase
JJB98_12075	COG0747	negative chemotaxis
JJB98_12080	COG0601	transmembrane transport
JJB98_12085	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_12090	COG0444	Belongs to the ABC transporter superfamily
JJB98_12095	COG4608	Belongs to the ABC transporter superfamily
JJB98_12110	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_12115	COG0183	Belongs to the thiolase family
JJB98_12120	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJB98_12120	COG1024	Enoyl-CoA hydratase
JJB98_12130	COG1234	tRNA 3'-trailer cleavage
JJB98_12135	COG3119	arylsulfatase activity
JJB98_12225	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJB98_12325	COG2345	Transcriptional regulator
JJB98_12350	COG1960	acyl-CoA dehydrogenase activity
JJB98_12365	COG0179	Fumarylacetoacetate (FAA) hydrolase
JJB98_12380	COG0251	oxidation-reduction process
JJB98_12390	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_12410	COG0411	ABC transporter
JJB98_12430	COG0154	amidase activity
JJB98_12450	COG0697	spore germination
JJB98_12525	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JJB98_12545	COG1850	ribulose-bisphosphate carboxylase activity
JJB98_12550	COG4451	ribulose bisphosphate carboxylase, small
JJB98_12625	COG4999	Histidine kinase
JJB98_12625	COG3437	response regulator, receiver
JJB98_12625	COG2205	protein histidine kinase activity
JJB98_12625	COG3850	Histidine kinase
JJB98_12670	COG0671	phosphoesterase, PA-phosphatase related
JJB98_12675	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_12710	COG2814	Major facilitator Superfamily
JJB98_12755	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJB98_12765	COG0475	glutathione-regulated potassium exporter activity
JJB98_12765	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JJB98_12775	COG1960	acyl-CoA dehydrogenase activity
JJB98_12795	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_12820	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_12825	COG0259	pyridoxamine-phosphate oxidase activity
JJB98_12850	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JJB98_12860	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JJB98_12875	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JJB98_12880	COG1993	acr, cog1993
JJB98_12885	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JJB98_12890	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JJB98_12935	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_12950	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_12955	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJB98_12960	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JJB98_12970	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JJB98_12975	COG1722	exodeoxyribonuclease VII activity
JJB98_12980	COG0123	including yeast histone deacetylase and acetoin utilization protein
JJB98_12985	COG1525	nuclease
JJB98_12985	COG0737	Belongs to the 5'-nucleotidase family
JJB98_12985	COG4085	toxin activity
JJB98_12995	COG1960	acyl-CoA dehydrogenase activity
JJB98_13010	COG2358	TRAP transporter, solute receptor (TAXI family
JJB98_13015	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJB98_13035	COG2080	2 iron, 2 sulfur cluster binding
JJB98_13040	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JJB98_13045	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JJB98_13050	COG3387	PFAM Glycoside hydrolase 15-related
JJB98_13070	COG0028	Belongs to the TPP enzyme family
JJB98_13075	COG0277	FAD linked oxidase domain protein
JJB98_13075	COG0247	lactate metabolic process
JJB98_13085	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_13115	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_13135	COG1473	amidohydrolase
JJB98_13140	COG4948	Mandelate Racemase Muconate Lactonizing
JJB98_13155	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JJB98_13180	COG3025	triphosphatase activity
JJB98_13210	COG1129	ABC transporter
JJB98_13230	COG0028	Belongs to the TPP enzyme family
JJB98_13235	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_13255	COG0741	lytic transglycosylase activity
JJB98_13260	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_13300	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JJB98_13310	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JJB98_13330	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_13335	COG1053	succinate dehydrogenase
JJB98_13350	COG1335	isochorismatase
JJB98_13360	COG1032	radical SAM domain protein
JJB98_13365	COG2814	Major facilitator Superfamily
JJB98_13370	COG0473	3-isopropylmalate dehydrogenase activity
JJB98_13375	COG2943	transferase activity, transferring hexosyl groups
JJB98_13380	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
JJB98_13400	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_13405	COG4106	trans-aconitate 2-methyltransferase activity
JJB98_13420	COG2015	COG2015, Alkyl sulfatase and related hydrolases
JJB98_13425	COG0438	transferase activity, transferring glycosyl groups
JJB98_13430	COG1132	(ABC) transporter
JJB98_13455	COG0297	glycogen (starch) synthase activity
JJB98_13470	COG0473	3-isopropylmalate dehydrogenase activity
JJB98_13480	COG1024	Enoyl-CoA hydratase
JJB98_13485	COG1396	sequence-specific DNA binding
JJB98_13500	COG0785	Cytochrome C biogenesis protein
JJB98_13515	COG3485	protocatechuate 3,4-dioxygenase
JJB98_13520	COG0515	serine threonine protein kinase
JJB98_13520	COG2815	serine threonine protein kinase
JJB98_13530	COG1116	anion transmembrane transporter activity
JJB98_13530	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JJB98_13540	COG1116	anion transmembrane transporter activity
JJB98_13540	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JJB98_13545	COG2223	nitrite transmembrane transporter activity
JJB98_13550	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJB98_13555	COG0243	molybdopterin cofactor binding
JJB98_13565	COG0656	L-ascorbic acid biosynthetic process
JJB98_13570	COG0697	spore germination
JJB98_13575	COG1063	alcohol dehydrogenase
JJB98_13580	COG1522	sequence-specific DNA binding
JJB98_13585	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JJB98_13605	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_13625	COG0129	dihydroxy-acid dehydratase activity
JJB98_13630	COG1024	Enoyl-CoA hydratase
JJB98_13640	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJB98_13645	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJB98_13655	COG1309	transcriptional regulator
JJB98_13660	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_13680	COG0673	inositol 2-dehydrogenase activity
JJB98_13700	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JJB98_13705	COG2124	cytochrome p450
JJB98_13715	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
JJB98_13715	COG0028	Belongs to the TPP enzyme family
JJB98_13725	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_13730	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_13735	COG4191	Histidine kinase
JJB98_13735	COG0784	Response regulator, receiver
JJB98_13740	COG2204	response regulator
JJB98_13770	COG4608	Belongs to the ABC transporter superfamily
JJB98_13775	COG0444	Belongs to the ABC transporter superfamily
JJB98_13780	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_13790	COG0747	negative chemotaxis
JJB98_13810	COG2267	carboxylic ester hydrolase activity
JJB98_13815	COG2124	cytochrome p450
JJB98_13815	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JJB98_13835	COG3243	poly(R)-hydroxyalkanoic acid synthase
JJB98_13850	COG2733	membrane
JJB98_13855	COG0596	Alpha beta hydrolase
JJB98_13865	COG3327	negative regulation of DNA-templated transcription, initiation
JJB98_13870	COG3396	Phenylacetate-CoA oxygenase
JJB98_13875	COG3460	Phenylacetate-CoA oxygenase
JJB98_13880	COG3396	Phenylacetate-CoA oxygenase
JJB98_13885	COG2151	metal-sulfur cluster biosynthetic enzyme
JJB98_13890	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJB98_13895	COG2050	protein possibly involved in aromatic compounds catabolism
JJB98_13930	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JJB98_13960	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_13965	COG0473	3-isopropylmalate dehydrogenase activity
JJB98_13970	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JJB98_13975	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJB98_13985	COG0583	DNA-binding transcription factor activity
JJB98_13990	COG4336	lyase activity
JJB98_14020	COG0235	Class ii aldolase
JJB98_14025	COG2084	Dehydrogenase
JJB98_14030	COG3622	Belongs to the hyi family
JJB98_14035	COG3395	kinase activity
JJB98_14040	COG0840	transmembrane signaling receptor activity
JJB98_14050	COG2070	2-Nitropropane dioxygenase
JJB98_14055	COG2072	flavoprotein involved in K transport
JJB98_14060	COG0625	glutathione transferase activity
JJB98_14075	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_14080	COG1024	Enoyl-CoA hydratase
JJB98_14095	COG1024	Enoyl-CoA hydratase
JJB98_14100	COG1960	acyl-CoA dehydrogenase activity
JJB98_14110	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_14115	COG1024	Enoyl-CoA hydratase
JJB98_14145	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JJB98_14150	COG3386	PFAM SMP-30 Gluconolaconase
JJB98_14155	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_14185	COG3145	DNA-N1-methyladenine dioxygenase activity
JJB98_14190	COG0028	Belongs to the TPP enzyme family
JJB98_14195	COG0179	Fumarylacetoacetate (FAA) hydrolase
JJB98_14215	COG3971	2-oxopent-4-enoate hydratase activity
JJB98_14220	COG1846	Transcriptional regulator
JJB98_14230	COG2721	sulfolactate sulfo-lyase activity
JJB98_14250	COG0302	gtp cyclohydrolase
JJB98_14265	COG4608	Belongs to the ABC transporter superfamily
JJB98_14270	COG0444	Belongs to the ABC transporter superfamily
JJB98_14275	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_14280	COG0601	transmembrane transport
JJB98_14285	COG0747	negative chemotaxis
JJB98_14330	COG4303	Ethanolamine ammonia lyase large subunit
JJB98_14340	COG4302	ethanolamine ammonia-lyase activity
JJB98_14360	COG1562	ergosterol biosynthetic process
JJB98_14365	COG1562	ergosterol biosynthetic process
JJB98_14370	COG1233	COG1233 Phytoene dehydrogenase and related
JJB98_14375	COG1657	PFAM Prenyltransferase squalene oxidase
JJB98_14380	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JJB98_14405	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JJB98_14430	COG1595	DNA-templated transcription, initiation
JJB98_14455	COG1473	amidohydrolase
JJB98_14465	COG1573	uracil-dna glycosylase
JJB98_14485	COG0587	DNA-directed DNA polymerase activity
JJB98_14495	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_14580	COG2827	Endonuclease containing a URI domain
JJB98_14595	COG1703	isobutyryl-CoA mutase activity
JJB98_14650	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JJB98_14660	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JJB98_14675	COG0433	COG0433 Predicted ATPase
JJB98_14685	COG0235	Class ii aldolase
JJB98_14700	COG4957	zinc ion binding
JJB98_14705	COG2166	iron-sulfur cluster assembly
JJB98_14715	COG3181	Tripartite tricarboxylate transporter family receptor
JJB98_14720	COG1414	Transcriptional regulator
JJB98_14730	COG2205	protein histidine kinase activity
JJB98_14780	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JJB98_14830	COG2983	Belongs to the UPF0260 family
JJB98_14835	COG0477	Major facilitator Superfamily
JJB98_14840	COG0784	Response regulator, receiver
JJB98_14840	COG4191	Histidine kinase
JJB98_14845	COG4191	Histidine kinase
JJB98_14845	COG0784	Response regulator, receiver
JJB98_14850	COG0028	Belongs to the TPP enzyme family
JJB98_14870	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JJB98_14900	COG4235	cytochrome complex assembly
JJB98_14905	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JJB98_14910	COG1138	Cytochrome C-type biogenesis protein
JJB98_14915	COG3088	subunit of a heme lyase
JJB98_14925	COG0745	RESPONSE REGULATOR receiver
JJB98_14930	COG2205	protein histidine kinase activity
JJB98_14935	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JJB98_14945	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JJB98_14950	COG3383	formate dehydrogenase (NAD+) activity
JJB98_14965	COG0583	DNA-binding transcription factor activity
JJB98_14970	COG2205	protein histidine kinase activity
JJB98_14970	COG2202	Pas domain
JJB98_14975	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JJB98_14980	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_14980	COG3321	synthase
JJB98_14980	COG0604	alcohol dehydrogenase
JJB98_15000	COG0179	Fumarylacetoacetate (FAA) hydrolase
JJB98_15005	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JJB98_15030	COG0443	Heat shock 70 kDa protein
JJB98_15045	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_15055	COG1802	Transcriptional regulator
JJB98_15065	COG1414	Transcriptional regulator
JJB98_15075	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JJB98_15080	COG3960	tartronate-semialdehyde synthase activity
JJB98_15085	COG3622	Belongs to the hyi family
JJB98_15090	COG2084	Dehydrogenase
JJB98_15115	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJB98_15125	COG1247	-acetyltransferase
JJB98_15135	COG1522	sequence-specific DNA binding
JJB98_15140	COG0686	Belongs to the AlaDH PNT family
JJB98_15150	COG2855	membrane
JJB98_15155	COG1116	anion transmembrane transporter activity
JJB98_15160	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_15165	COG4521	taurine ABC transporter
JJB98_15170	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_15185	COG1053	succinate dehydrogenase
JJB98_15205	COG1879	ABC-type sugar transport system periplasmic component
JJB98_15210	COG1129	ABC transporter
JJB98_15215	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJB98_15220	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJB98_15240	COG3386	PFAM SMP-30 Gluconolaconase
JJB98_15245	COG4213	ABC transporter substrate-binding protein
JJB98_15250	COG1129	ABC transporter
JJB98_15255	COG4214	carbohydrate transport
JJB98_15260	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJB98_15290	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_15305	COG0154	amidase activity
JJB98_15315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_15325	COG4608	Belongs to the ABC transporter superfamily
JJB98_15330	COG0747	negative chemotaxis
JJB98_15335	COG0400	carboxylic ester hydrolase activity
JJB98_15340	COG0346	lactoylglutathione lyase activity
JJB98_15345	COG0583	DNA-binding transcription factor activity
JJB98_15360	COG0778	Nitroreductase
JJB98_15365	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
JJB98_15375	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
JJB98_15385	COG1492	cobalamin metabolic process
JJB98_15430	COG2099	Precorrin-6x reductase
JJB98_15445	COG2875	Belongs to the precorrin methyltransferase family
JJB98_15450	COG1797	cobyrinic acid a,c-diamide synthase activity
JJB98_15455	COG1648	precorrin-2 dehydrogenase activity
JJB98_15455	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JJB98_15470	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
JJB98_15500	COG1070	Carbohydrate kinase
JJB98_15505	COG1129	ABC transporter
JJB98_15510	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJB98_15515	COG1879	ABC-type sugar transport system periplasmic component
JJB98_15525	COG0438	transferase activity, transferring glycosyl groups
JJB98_15535	COG0445	tRNA wobble uridine modification
JJB98_15545	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
JJB98_15565	COG2205	protein histidine kinase activity
JJB98_15565	COG2202	Pas domain
JJB98_15570	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JJB98_15575	COG2084	Dehydrogenase
JJB98_15590	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JJB98_15595	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JJB98_15605	COG0745	RESPONSE REGULATOR receiver
JJB98_15610	COG5002	protein histidine kinase activity
JJB98_15615	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JJB98_15625	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JJB98_15635	COG0546	phosphoglycolate phosphatase activity
JJB98_15640	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JJB98_15675	COG0861	Integral membrane protein TerC family
JJB98_15695	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
JJB98_15700	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JJB98_15720	COG0215	cysteine-tRNA ligase activity
JJB98_15730	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JJB98_15745	COG5265	(ABC) transporter
JJB98_15750	COG0688	phosphatidylethanolamine metabolic process
JJB98_15755	COG1183	phosphatidylcholine synthase activity
JJB98_15765	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_15770	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JJB98_15780	COG3158	transport of potassium into the cell
JJB98_15785	COG3158	transport of potassium into the cell
JJB98_15795	COG0436	Aminotransferase
JJB98_15800	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JJB98_15820	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJB98_15830	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJB98_15835	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJB98_15860	COG1285	pathogenesis
JJB98_15875	COG2010	Cytochrome c
JJB98_15875	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JJB98_15880	COG2080	2 iron, 2 sulfur cluster binding
JJB98_15920	COG1846	Transcriptional regulator
JJB98_15950	COG0517	IMP dehydrogenase activity
JJB98_16005	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JJB98_16060	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_16065	COG1309	transcriptional regulator
JJB98_16075	COG0402	S-adenosylhomocysteine deaminase activity
JJB98_16085	COG1234	tRNA 3'-trailer cleavage
JJB98_16095	COG5507	3-demethylubiquinone-9 3-methyltransferase
JJB98_16105	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_16110	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_16120	COG4774	siderophore transport
JJB98_16125	COG3128	pkhd-type hydroxylase
JJB98_16135	COG0848	biopolymer transport protein
JJB98_16150	COG1994	Peptidase M50
JJB98_16160	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_16170	COG0129	dihydroxy-acid dehydratase activity
JJB98_16175	COG1609	Transcriptional regulator
JJB98_16180	COG3842	ATPase activity
JJB98_16195	COG0395	ABC-type sugar transport system, permease component
JJB98_16200	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_16205	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJB98_16210	COG0800	Aldolase
JJB98_16225	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_16230	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JJB98_16250	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JJB98_16250	COG2066	Belongs to the glutaminase family
JJB98_16265	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JJB98_16275	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_16285	COG0277	FAD linked oxidase domain protein
JJB98_16305	COG1309	transcriptional regulator
JJB98_16315	COG1960	acyl-CoA dehydrogenase activity
JJB98_16330	COG2271	Major facilitator Superfamily
JJB98_16335	COG0183	Belongs to the thiolase family
JJB98_16340	COG1024	Enoyl-CoA hydratase
JJB98_16360	COG1960	acyl-CoA dehydrogenase activity
JJB98_16385	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_16400	COG0488	(ABC) transporter
JJB98_16405	COG1671	Belongs to the UPF0178 family
JJB98_16425	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JJB98_16440	COG2130	NADP-dependent
JJB98_16460	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJB98_16460	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JJB98_16465	COG1278	Cold shock
JJB98_16480	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JJB98_16480	COG0519	Catalyzes the synthesis of GMP from XMP
JJB98_16525	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_16540	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_16545	COG0583	DNA-binding transcription factor activity
JJB98_16550	COG4977	sequence-specific DNA binding
JJB98_16560	COG2814	Major facilitator Superfamily
JJB98_16570	COG3258	Cytochrome c
JJB98_16650	COG2188	Transcriptional regulator
JJB98_16660	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JJB98_16675	COG2207	Transcriptional regulator
JJB98_16690	COG0242	peptide deformylase activity
JJB98_16700	COG2223	nitrite transmembrane transporter activity
JJB98_16720	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_16725	COG0583	DNA-binding transcription factor activity
JJB98_16765	COG0456	acetyltransferase
JJB98_16780	COG0625	glutathione transferase activity
JJB98_16785	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJB98_16785	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJB98_16790	COG1393	Belongs to the ArsC family
JJB98_16825	COG1392	Phosphate transport regulator
JJB98_16830	COG0306	phosphate transporter
JJB98_16855	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_16870	COG1160	GTP binding
JJB98_16885	COG0300	oxidoreductase activity
JJB98_16890	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JJB98_16895	COG1286	toxin biosynthetic process
JJB98_16905	COG1879	ABC-type sugar transport system periplasmic component
JJB98_16920	COG0708	Exodeoxyribonuclease III
JJB98_16930	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JJB98_16935	COG0305	Participates in initiation and elongation during chromosome replication
JJB98_16940	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JJB98_16960	COG0359	binds to the 23S rRNA
JJB98_16970	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JJB98_16975	COG0360	Binds together with S18 to 16S ribosomal RNA
JJB98_16990	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JJB98_17000	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJB98_17005	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJB98_17010	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JJB98_17015	COG1561	YicC-like family, N-terminal region
JJB98_17020	COG0194	GDP metabolic process
JJB98_17065	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JJB98_17070	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JJB98_17090	COG0795	lipopolysaccharide-transporting ATPase activity
JJB98_17095	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJB98_17110	COG0488	(ABC) transporter
JJB98_17125	COG0105	UTP biosynthetic process
JJB98_17130	COG0861	Integral membrane protein TerC family
JJB98_17135	COG0248	Ppx GppA phosphatase
JJB98_17140	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JJB98_17150	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JJB98_17155	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JJB98_17160	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JJB98_17165	COG1278	Cold shock
JJB98_17185	COG2153	protein acetylation
JJB98_17200	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJB98_17205	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JJB98_17220	COG1175	transmembrane transport
JJB98_17230	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JJB98_17235	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JJB98_17240	COG0281	malic enzyme
JJB98_17240	COG0280	phosphate acetyltransferase
JJB98_17255	COG3842	ATPase activity
JJB98_17260	COG1175	transmembrane transport
JJB98_17265	COG0395	ABC-type sugar transport system, permease component
JJB98_17280	COG0386	Belongs to the glutathione peroxidase family
JJB98_17290	COG3045	CreA protein
JJB98_17320	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JJB98_17330	COG3483	tryptophan 2,3-dioxygenase activity
JJB98_17360	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_17365	COG2365	Tyrosine phosphatase family
JJB98_17375	COG0174	glutamine synthetase
JJB98_17420	COG0488	(ABC) transporter
JJB98_17445	COG0657	acetylesterase activity
JJB98_17475	COG2207	Transcriptional regulator
JJB98_17485	COG0840	transmembrane signaling receptor activity
JJB98_17505	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JJB98_17515	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_17520	COG4552	Acetyltransferase involved in intracellular survival and related
JJB98_17530	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_17535	COG1309	transcriptional regulator
JJB98_17545	COG0850	regulation of cytokinetic process
JJB98_17550	COG2894	cell division
JJB98_17555	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JJB98_17570	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_17585	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_17595	COG1846	Transcriptional regulator
JJB98_17630	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JJB98_17670	COG2824	Alkylphosphonate utilization operon protein PhnA
JJB98_17705	COG2336	PFAM SpoVT AbrB
JJB98_17745	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JJB98_17750	COG0697	spore germination
JJB98_17755	COG0784	Response regulator, receiver
JJB98_17755	COG4191	Histidine kinase
JJB98_17795	COG0657	acetylesterase activity
JJB98_17805	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JJB98_17810	COG4565	transcriptional regulatory protein
JJB98_17815	COG0784	Response regulator, receiver
JJB98_17820	COG5002	protein histidine kinase activity
JJB98_17825	COG0439	Biotin carboxylase
JJB98_17830	COG0511	ligase activity, forming carbon-carbon bonds
JJB98_17835	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JJB98_17855	COG0436	Aminotransferase
JJB98_17860	COG1268	BioY protein
JJB98_17865	COG1301	dicarboxylic acid transport
JJB98_17870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_17880	COG1530	ribonuclease E activity
JJB98_17880	COG1530	ribonuclease E activity
JJB98_17890	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JJB98_17900	COG2084	Dehydrogenase
JJB98_17915	COG0739	heme binding
JJB98_17930	COG2259	Doxx family
JJB98_17940	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JJB98_17945	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JJB98_17960	COG2945	thiolester hydrolase activity
JJB98_17975	COG1104	cysteine desulfurase activity
JJB98_17980	COG0719	Fe-S assembly protein
JJB98_17985	COG0396	ATPase activity
JJB98_17990	COG0719	Fe-S assembly protein
JJB98_17995	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JJB98_18000	COG2151	metal-sulfur cluster biosynthetic enzyme
JJB98_18005	COG0316	Belongs to the HesB IscA family
JJB98_18015	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJB98_18025	COG0513	Belongs to the DEAD box helicase family
JJB98_18045	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_18065	COG0187	DNA topoisomerase II activity
JJB98_18070	COG0586	Pfam SNARE associated Golgi protein
JJB98_18090	COG3243	poly(R)-hydroxyalkanoic acid synthase
JJB98_18100	COG0436	Aminotransferase
JJB98_18110	COG1494	fructose-1,6-bisphosphatase
JJB98_18125	COG1802	Transcriptional regulator
JJB98_18130	COG1024	Enoyl-CoA hydratase
JJB98_18135	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_18155	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JJB98_18165	COG2323	membrane
JJB98_18170	COG1444	tRNA N-acetyltransferase activity
JJB98_18180	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JJB98_18185	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_18210	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJB98_18220	COG2354	Protein conserved in bacteria
JJB98_18230	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JJB98_18250	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJB98_18295	COG0625	glutathione transferase activity
JJB98_18310	COG0776	regulation of translation
JJB98_18345	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JJB98_18380	COG1522	sequence-specific DNA binding
JJB98_18390	COG1960	acyl-CoA dehydrogenase activity
JJB98_18395	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_18400	COG4770	biotin carboxylase activity
JJB98_18420	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JJB98_18480	COG2373	Large extracellular alpha-helical protein
JJB98_18485	COG4953	penicillin-binding protein 1C
JJB98_18495	COG0671	phosphoesterase, PA-phosphatase related
JJB98_18500	COG0463	Glycosyl transferase, family 2
JJB98_18510	COG1283	sodium-dependent phosphate transmembrane transporter activity
JJB98_18515	COG0626	cystathionine gamma-synthase activity
JJB98_18520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJB98_18525	COG4597	amino acid ABC transporter
JJB98_18530	COG0765	amino acid transport
JJB98_18535	COG1126	abc transporter atp-binding protein
JJB98_18575	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_18620	COG2268	Band 7 protein
JJB98_18680	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJB98_18695	COG0525	valine-tRNA ligase activity
JJB98_18700	COG2094	Belongs to the DNA glycosylase MPG family
JJB98_18705	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JJB98_18710	COG2867	negative regulation of translational initiation
JJB98_18715	COG1058	Belongs to the CinA family
JJB98_18715	COG1546	Belongs to the CinA family
JJB98_18720	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JJB98_18720	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JJB98_18745	COG5000	phosphorelay sensor kinase activity
JJB98_18750	COG2204	response regulator
JJB98_18755	COG1923	regulation of RNA biosynthetic process
JJB98_18760	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JJB98_18765	COG3956	TIGRFAM MazG family protein
JJB98_18770	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JJB98_18795	COG4774	siderophore transport
JJB98_18815	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JJB98_18820	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JJB98_18825	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_18845	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JJB98_18845	COG0321	lipoyl(octanoyl) transferase activity
JJB98_18850	COG0084	hydrolase, TatD family'
JJB98_18880	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JJB98_18885	COG1686	Belongs to the peptidase S11 family
JJB98_18890	COG2267	carboxylic ester hydrolase activity
JJB98_18910	COG0398	Pfam SNARE associated Golgi protein
JJB98_18965	COG0129	dihydroxy-acid dehydratase activity
JJB98_18990	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JJB98_18990	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJB98_19000	COG1335	isochorismatase
JJB98_19030	COG1175	transmembrane transport
JJB98_19035	COG0395	ABC-type sugar transport system, permease component
JJB98_19045	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJB98_19080	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJB98_19080	COG0473	3-isopropylmalate dehydrogenase activity
JJB98_19090	COG1984	allophanate hydrolase subunit 2
JJB98_19095	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JJB98_19105	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JJB98_19110	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJB98_19115	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JJB98_19120	COG3707	response regulator
JJB98_19125	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJB98_19135	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JJB98_19145	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
JJB98_19170	COG1183	phosphatidylcholine synthase activity
JJB98_19175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_19180	COG0679	Auxin Efflux Carrier
JJB98_19210	COG2124	cytochrome p450
JJB98_19215	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JJB98_19245	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JJB98_19255	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JJB98_19290	COG1598	PFAM Uncharacterised protein family UPF0150
JJB98_19305	COG1598	PFAM Uncharacterised protein family UPF0150
JJB98_19325	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JJB98_19340	COG0628	permease
JJB98_19370	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JJB98_19390	COG0697	spore germination
JJB98_19420	COG1309	transcriptional regulator
JJB98_19430	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JJB98_19435	COG3742	Toxic component of a toxin-antitoxin (TA) module. An RNase
JJB98_19445	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JJB98_19465	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JJB98_19485	COG0577	efflux transmembrane transporter activity
JJB98_19485	COG1136	(ABC) transporter
JJB98_19495	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JJB98_19500	COG0629	single-stranded DNA binding
JJB98_19515	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JJB98_19540	COG0546	phosphoglycolate phosphatase activity
JJB98_19600	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
JJB98_19610	COG2340	Cysteine-rich secretory protein family
JJB98_19630	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JJB98_19650	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJB98_19655	COG1862	Preprotein translocase
JJB98_19665	COG4942	peptidase
JJB98_19670	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJB98_19680	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JJB98_19690	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JJB98_19695	COG0805	protein transport
JJB98_19700	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJB98_19705	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJB98_19710	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JJB98_19715	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JJB98_19720	COG1472	Belongs to the glycosyl hydrolase 3 family
JJB98_19730	COG0018	arginyl-trna synthetase
JJB98_19735	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JJB98_19750	COG0784	Response regulator, receiver
JJB98_19750	COG5002	protein histidine kinase activity
JJB98_19750	COG2198	Histidine kinase
JJB98_19755	COG0708	Exodeoxyribonuclease III
JJB98_19760	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JJB98_19765	COG0129	dihydroxy-acid dehydratase activity
JJB98_19790	COG0741	lytic transglycosylase activity
JJB98_19800	COG4191	Histidine kinase
JJB98_19805	COG4566	intracellular signal transduction
JJB98_19810	COG4566	intracellular signal transduction
JJB98_19820	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JJB98_19825	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJB98_19830	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJB98_19845	COG0022	dehydrogenase e1 component
JJB98_19845	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJB98_19850	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JJB98_19865	COG0431	NADPH-dependent FMN reductase
JJB98_19875	COG0148	phosphopyruvate hydratase activity
JJB98_19885	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JJB98_19910	COG2877	3-deoxy-8-phosphooctulonate synthase activity
JJB98_19920	COG0504	CTP synthase activity
JJB98_19930	COG0149	triose-phosphate isomerase activity
JJB98_19940	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JJB98_19945	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JJB98_19950	COG0134	indole-3-glycerol-phosphate synthase activity
JJB98_19955	COG0315	cyclic pyranopterin monophosphate synthase activity
JJB98_19970	COG2271	Major facilitator Superfamily
JJB98_19975	COG3300	MHYT domain
JJB98_19975	COG5001	Diguanylate cyclase
JJB98_19980	COG0793	Belongs to the peptidase S41A family
JJB98_19985	COG1304	FMN binding
JJB98_19990	COG1011	Hydrolase
JJB98_20000	COG0303	'Molybdopterin
JJB98_20005	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJB98_20030	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJB98_20035	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJB98_20040	COG0372	Belongs to the citrate synthase family
JJB98_20065	COG1175	transmembrane transport
JJB98_20070	COG0395	ABC-type sugar transport system, permease component
JJB98_20080	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_20085	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJB98_20095	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJB98_20100	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJB98_20105	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJB98_20110	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJB98_20115	COG0750	zinc metalloprotease
JJB98_20120	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JJB98_20130	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JJB98_20135	COG0233	cytoplasmic translational termination
JJB98_20140	COG0528	UMP kinase activity
JJB98_20145	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JJB98_20150	COG0052	Belongs to the universal ribosomal protein uS2 family
JJB98_20190	COG0583	DNA-binding transcription factor activity
JJB98_20200	COG0604	alcohol dehydrogenase
JJB98_20205	COG1136	(ABC) transporter
JJB98_20215	COG0442	prolyl-tRNA aminoacylation
JJB98_20235	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJB98_20245	COG4774	siderophore transport
JJB98_20265	COG1129	ABC transporter
JJB98_20270	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJB98_20285	COG2205	protein histidine kinase activity
JJB98_20285	COG0784	Response regulator, receiver
JJB98_20300	COG4608	Belongs to the ABC transporter superfamily
JJB98_20305	COG0444	Belongs to the ABC transporter superfamily
JJB98_20310	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_20315	COG0601	transmembrane transport
JJB98_20320	COG0747	negative chemotaxis
JJB98_20335	COG0346	lactoylglutathione lyase activity
JJB98_20350	COG1007	ATP synthesis coupled electron transport
JJB98_20365	COG0713	ATP synthesis coupled electron transport
JJB98_20375	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJB98_20380	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JJB98_20390	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
JJB98_20400	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
JJB98_20410	COG0649	NAD binding
JJB98_20420	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJB98_20440	COG4774	siderophore transport
JJB98_20460	COG2195	Cleaves the N-terminal amino acid of tripeptides
JJB98_20505	COG2226	methyltransferase
JJB98_20525	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JJB98_20530	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JJB98_20535	COG0740	serine-type endopeptidase activity
JJB98_20540	COG0544	peptidyl-prolyl cis-trans isomerase activity
JJB98_20550	COG2132	Multicopper oxidase
JJB98_20555	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JJB98_20560	COG3657	addiction module killer protein
JJB98_20570	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JJB98_20570	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JJB98_20575	COG0347	Belongs to the P(II) protein family
JJB98_20580	COG0174	glutamine synthetase
JJB98_20585	COG0330	HflC and HflK could
JJB98_20620	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JJB98_20650	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JJB98_20655	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JJB98_20665	COG1024	Enoyl-CoA hydratase
JJB98_20685	COG1612	heme a metabolic process
JJB98_20710	COG0438	transferase activity, transferring glycosyl groups
JJB98_20725	COG1846	Transcriptional regulator
JJB98_20730	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_20735	COG3268	Saccharopine dehydrogenase
JJB98_20785	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_20795	COG0657	acetylesterase activity
JJB98_20825	COG0776	regulation of translation
JJB98_20830	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JJB98_20835	COG0416	fatty acid biosynthetic process
JJB98_20860	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
JJB98_20865	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JJB98_20870	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJB98_20875	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JJB98_20885	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JJB98_20885	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JJB98_20890	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JJB98_20895	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JJB98_20920	COG0113	porphobilinogen synthase activity
JJB98_20940	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JJB98_20945	COG1914	H( )-stimulated, divalent metal cation uptake system
JJB98_21000	COG1278	Cold shock
JJB98_21010	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JJB98_21020	COG1381	Involved in DNA repair and RecF pathway recombination
JJB98_21030	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JJB98_21035	COG0571	ribonuclease III activity
JJB98_21040	COG0681	Belongs to the peptidase S26 family
JJB98_21045	COG0736	holo-[acyl-carrier-protein] synthase activity
JJB98_21050	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JJB98_21060	COG1758	RNA polymerase activity
JJB98_21080	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JJB98_21085	COG1970	mechanosensitive ion channel activity
JJB98_21090	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_21095	COG0741	lytic transglycosylase activity
JJB98_21130	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JJB98_21140	COG0154	amidase activity
JJB98_21150	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JJB98_21155	COG2070	2-Nitropropane dioxygenase
JJB98_21160	COG2070	2-Nitropropane dioxygenase
JJB98_21165	COG0583	DNA-binding transcription factor activity
JJB98_21175	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JJB98_21195	COG1960	acyl-CoA dehydrogenase activity
JJB98_21200	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
JJB98_21205	COG0540	Belongs to the ATCase OTCase family
JJB98_21210	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JJB98_21215	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JJB98_21225	COG0154	amidase activity
JJB98_21230	COG0758	DNA mediated transformation
JJB98_21240	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_21255	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JJB98_21260	COG0557	exoribonuclease II activity
JJB98_21285	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JJB98_21310	COG0784	Response regulator, receiver
JJB98_21320	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJB98_21355	COG0537	adenosine 5'-monophosphoramidase activity
JJB98_21360	COG1720	tRNA m6t6A37 methyltransferase activity
JJB98_21390	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJB98_21405	COG2814	Major facilitator Superfamily
JJB98_21420	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JJB98_21440	COG1686	Belongs to the peptidase S11 family
JJB98_21460	COG1192	Involved in chromosome partitioning
JJB98_21465	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JJB98_21510	COG2239	Acts as a magnesium transporter
JJB98_21520	COG0726	polysaccharide deacetylase
JJB98_21555	COG4221	oxidoreductase activity
JJB98_21570	COG0366	Alpha amylase catalytic
JJB98_21580	COG1335	isochorismatase
JJB98_21600	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_21610	COG3842	ATPase activity
JJB98_21615	COG0583	DNA-binding transcription factor activity
JJB98_21635	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_21655	COG0477	Major facilitator Superfamily
JJB98_21660	COG0477	Major facilitator Superfamily
JJB98_21675	COG2226	methyltransferase
JJB98_21685	COG3474	cytochrome
JJB98_21740	COG0653	protein targeting
JJB98_21815	COG2165	general secretion pathway protein
JJB98_21825	COG2165	general secretion pathway protein
JJB98_21830	COG1459	type II secretion system
JJB98_21835	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JJB98_21840	COG1450	Type ii and iii secretion system protein
JJB98_21910	COG0321	lipoyl(octanoyl) transferase activity
JJB98_21915	COG0305	Participates in initiation and elongation during chromosome replication
JJB98_21940	COG1254	Belongs to the acylphosphatase family
JJB98_21945	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JJB98_21950	COG4770	biotin carboxylase activity
JJB98_21990	COG4948	Mandelate Racemase Muconate Lactonizing
JJB98_21995	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_22000	COG1063	alcohol dehydrogenase
JJB98_22015	COG2197	response regulator
JJB98_22045	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_22070	COG0450	alkyl hydroperoxide reductase
JJB98_22155	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_22160	COG2030	dehydratase
JJB98_22190	COG2860	membrane
JJB98_22250	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_22260	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JJB98_22290	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JJB98_22295	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_22310	COG1733	regulation of RNA biosynthetic process
JJB98_22330	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_22335	COG0203	ribosomal protein L17
JJB98_22340	COG0202	RNA polymerase activity
JJB98_22345	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JJB98_22350	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JJB98_22355	COG0563	adenylate kinase activity
JJB98_22365	COG0200	Binds to the 23S rRNA
JJB98_22370	COG1841	ribosomal large subunit assembly
JJB98_22375	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JJB98_22380	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JJB98_22385	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JJB98_22390	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JJB98_22395	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JJB98_22400	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JJB98_22405	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JJB98_22410	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JJB98_22415	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JJB98_22420	COG0255	Belongs to the universal ribosomal protein uL29 family
JJB98_22425	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JJB98_22430	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JJB98_22435	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JJB98_22440	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JJB98_22445	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JJB98_22450	COG0089	rRNA binding
JJB98_22455	COG0088	Forms part of the polypeptide exit tunnel
JJB98_22460	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JJB98_22465	COG0051	transcription antitermination factor activity, RNA binding
JJB98_22470	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JJB98_22475	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JJB98_22480	COG0049	tRNA binding
JJB98_22485	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JJB98_22495	COG1132	(ABC) transporter
JJB98_22500	COG1231	oxidoreductase activity
JJB98_22505	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JJB98_22510	COG0085	RNA polymerase activity
JJB98_22520	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JJB98_22525	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJB98_22530	COG0081	regulation of translation
JJB98_22535	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JJB98_22540	COG0250	Participates in transcription elongation, termination and antitermination
JJB98_22545	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JJB98_22560	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JJB98_22565	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_22570	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JJB98_22570	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JJB98_22575	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJB98_22590	COG3959	Transketolase, thiamine diphosphate binding domain
JJB98_22595	COG3958	Transketolase
JJB98_22620	COG2226	methyltransferase
JJB98_22650	COG0673	inositol 2-dehydrogenase activity
JJB98_22670	COG1216	Glycosyl transferase, family 2
JJB98_22675	COG0463	Glycosyl transferase, family 2
JJB98_22690	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_22695	COG0406	alpha-ribazole phosphatase activity
JJB98_22700	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_22720	COG1960	acyl-CoA dehydrogenase activity
JJB98_22725	COG1309	transcriptional regulator
JJB98_22740	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_22795	COG3795	YCII-related domain
JJB98_22810	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JJB98_22860	COG3218	ABC-type transport auxiliary lipoprotein component
JJB98_22860	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JJB98_22865	COG1127	ABC transporter
JJB98_22885	COG1042	CoA-binding domain protein
JJB98_22885	COG0045	succinate-CoA ligase (ADP-forming) activity
JJB98_22885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJB98_22910	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JJB98_22940	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JJB98_22940	COG0617	tRNA 3'-terminal CCA addition
JJB98_22940	COG0517	IMP dehydrogenase activity
JJB98_22950	COG3038	cytochrome b561
JJB98_22985	COG0640	Transcriptional regulator
JJB98_22990	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJB98_23030	COG4263	nitrous-oxide reductase activity
JJB98_23110	COG1295	ribonuclease BN
JJB98_23175	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JJB98_23180	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJB98_23240	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JJB98_23255	COG1335	isochorismatase
JJB98_23280	COG2847	Copper chaperone PCu(A)C
JJB98_23285	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JJB98_23290	COG1981	membrane
JJB98_23295	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJB98_23310	COG0714	Associated with various cellular activities
JJB98_23315	COG3256	nitric oxide reductase
JJB98_23330	COG1845	cytochrome c oxidase, subunit III
JJB98_23350	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJB98_23370	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JJB98_23375	COG0534	Mate efflux family protein
JJB98_23380	COG0534	Mate efflux family protein
JJB98_23395	COG1846	Transcriptional regulator
JJB98_23450	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JJB98_23450	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JJB98_23460	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JJB98_23465	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JJB98_23470	COG1802	Transcriptional regulator
JJB98_23480	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
JJB98_23500	COG0523	cobalamin synthesis protein
JJB98_23505	COG0803	Belongs to the bacterial solute-binding protein 9 family
JJB98_23520	COG3415	Transposase
JJB98_23520	COG2801	Transposase and inactivated derivatives
JJB98_23525	COG1012	belongs to the aldehyde dehydrogenase family
JJB98_23545	COG2847	Copper chaperone PCu(A)C
JJB98_23580	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_23600	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJB98_23615	COG2217	Heavy metal translocating P-type atpase
JJB98_23630	COG2010	Cytochrome c
JJB98_23645	COG3278	Belongs to the heme-copper respiratory oxidase family
JJB98_23650	COG0516	GMP reductase activity
JJB98_23650	COG0517	IMP dehydrogenase activity
JJB98_23660	COG4191	Histidine kinase
JJB98_23665	COG4566	intracellular signal transduction
JJB98_23675	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_23680	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_23685	COG3293	Transposase
JJB98_23695	COG1475	DNA binding
JJB98_23705	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJB98_23805	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JJB98_23830	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JJB98_23835	COG0302	gtp cyclohydrolase
JJB98_23850	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JJB98_23880	COG2814	Major facilitator Superfamily
JJB98_23885	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JJB98_23900	COG5001	Diguanylate cyclase
JJB98_23915	COG1752	Esterase of the alpha-beta hydrolase superfamily
JJB98_23920	COG0517	IMP dehydrogenase activity
JJB98_23950	COG0513	Belongs to the DEAD box helicase family
JJB98_23980	COG1063	alcohol dehydrogenase
JJB98_24090	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JJB98_24105	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJB98_24125	COG0747	negative chemotaxis
JJB98_24135	COG0601	transmembrane transport
JJB98_24140	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_24145	COG4172	Belongs to the ABC transporter superfamily
JJB98_24155	COG1473	amidohydrolase
JJB98_24160	COG0154	amidase activity
JJB98_24165	COG1024	Enoyl-CoA hydratase
JJB98_24170	COG0604	alcohol dehydrogenase
JJB98_24170	COG3321	synthase
JJB98_24190	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JJB98_24195	COG1058	Belongs to the CinA family
JJB98_24195	COG1546	Belongs to the CinA family
JJB98_24205	COG2308	Evidence 4 Homologs of previously reported genes of
JJB98_24215	COG1305	Transglutaminase-like
JJB98_24230	COG1069	ribulokinase activity
JJB98_24240	COG4214	carbohydrate transport
JJB98_24265	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJB98_24275	COG5425	PFAM Usg family protein
JJB98_24280	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JJB98_24285	COG0459	protein refolding
JJB98_24300	COG0625	glutathione transferase activity
JJB98_24340	COG0384	phenazine biosynthesis protein PhzF
JJB98_24350	COG0842	Transport permease protein
JJB98_24355	COG1131	(ABC) transporter
JJB98_24370	COG0640	Transcriptional regulator
JJB98_24395	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JJB98_24400	COG3608	succinylglutamate desuccinylase aspartoacylase
JJB98_24400	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JJB98_24435	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JJB98_24440	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JJB98_24445	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJB98_24490	COG4191	Histidine kinase
JJB98_24490	COG0784	Response regulator, receiver
JJB98_24525	COG0515	serine threonine protein kinase
JJB98_24525	COG2815	serine threonine protein kinase
JJB98_24565	COG1309	transcriptional regulator
JJB98_24570	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JJB98_24575	COG1473	amidohydrolase
JJB98_24580	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_24595	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JJB98_24610	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JJB98_24615	COG3668	Plasmid stabilization system
JJB98_24635	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JJB98_24640	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JJB98_24645	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JJB98_24650	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
JJB98_24680	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JJB98_24695	COG0047	phosphoribosylformylglycinamidine synthase activity
JJB98_24700	COG0598	Magnesium transport protein CorA
JJB98_24705	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JJB98_24710	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JJB98_24725	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
JJB98_24740	COG0538	isocitrate dehydrogenase activity
JJB98_24745	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JJB98_24750	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JJB98_24755	COG0509	glycine decarboxylation via glycine cleavage system
JJB98_24760	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JJB98_24760	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JJB98_24770	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JJB98_24900	COG2917	probably involved in intracellular septation
JJB98_24910	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JJB98_24910	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JJB98_24950	COG1684	flagellar biosynthetic protein fliR
JJB98_24955	COG1987	bacterial-type flagellum assembly
JJB98_24960	COG1677	Flagellar hook-basal body complex protein FliE
JJB98_24965	COG1558	bacterial-type flagellum-dependent cell motility
JJB98_24980	COG1338	Plays a role in the flagellum-specific transport system
JJB98_25015	COG4786	Flagellar basal body rod
JJB98_25020	COG4786	Flagellar basal body rod
JJB98_25030	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JJB98_25045	COG2910	NAD(P)H-binding
JJB98_25050	COG1733	regulation of RNA biosynthetic process
JJB98_25060	COG1706	bacterial-type flagellum-dependent cell motility
JJB98_25080	COG5442	Flagellar protein FlaF
JJB98_25085	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JJB98_25090	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JJB98_25095	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JJB98_25100	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JJB98_25105	COG5443	negative regulation of bacterial-type flagellum assembly
JJB98_25110	COG0076	glutamate decarboxylase activity
JJB98_25135	COG1749	Flagellar hook protein flgE
JJB98_25140	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JJB98_25145	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_25165	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJB98_25185	COG3300	MHYT domain
JJB98_25185	COG5001	Diguanylate cyclase
JJB98_25195	COG3685	Protein conserved in bacteria
JJB98_25210	COG2271	Major facilitator Superfamily
JJB98_25215	COG0583	DNA-binding transcription factor activity
JJB98_25220	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_25225	COG4948	Mandelate Racemase Muconate Lactonizing
JJB98_25230	COG1012	belongs to the aldehyde dehydrogenase family
JJB98_25235	COG2721	sulfolactate sulfo-lyase activity
JJB98_25250	COG0492	ferredoxin-NADP+ reductase activity
JJB98_25260	COG0633	Ferredoxin
JJB98_25275	COG2827	Endonuclease containing a URI domain
JJB98_25280	COG3218	ABC-type transport auxiliary lipoprotein component
JJB98_25280	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JJB98_25285	COG1127	ABC transporter
JJB98_25290	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JJB98_25295	COG4948	Mandelate Racemase Muconate Lactonizing
JJB98_25300	COG2814	Major facilitator Superfamily
JJB98_25320	COG4154	Belongs to the RbsD FucU family
JJB98_25335	COG0438	transferase activity, transferring glycosyl groups
JJB98_25345	COG0351	phosphomethylpyrimidine kinase
JJB98_25350	COG0784	Response regulator, receiver
JJB98_25350	COG4191	Histidine kinase
JJB98_25360	COG2010	Cytochrome c
JJB98_25375	COG3909	cytochrome
JJB98_25410	COG0673	inositol 2-dehydrogenase activity
JJB98_25415	COG0662	Cupin 2, conserved barrel domain protein
JJB98_25415	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
JJB98_25430	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JJB98_25450	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JJB98_25450	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JJB98_25460	COG0859	PFAM glycosyl transferase family 9
JJB98_25475	COG1132	(ABC) transporter
JJB98_25505	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
JJB98_25510	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JJB98_25530	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JJB98_25535	COG0410	ABC transporter
JJB98_25600	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_25605	COG0559	Belongs to the binding-protein-dependent transport system permease family
JJB98_25625	COG2942	2-epimerase
JJB98_25630	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
JJB98_25640	COG2089	acid synthase
JJB98_25645	COG1083	cytidylyl-transferase
JJB98_25650	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_25660	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_25665	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_25675	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JJB98_25680	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_25685	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JJB98_25690	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JJB98_25695	COG2089	acid synthase
JJB98_25705	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JJB98_25715	COG1083	cytidylyl-transferase
JJB98_25745	COG1215	transferase activity, transferring glycosyl groups
JJB98_25750	COG0463	Glycosyl transferase, family 2
JJB98_25755	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_25760	COG0028	Belongs to the TPP enzyme family
JJB98_25775	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JJB98_25785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_25800	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_25820	COG1024	Enoyl-CoA hydratase
JJB98_25825	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JJB98_25830	COG0277	FAD linked oxidase domain protein
JJB98_25830	COG0247	lactate metabolic process
JJB98_25840	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JJB98_25845	COG0243	molybdopterin cofactor binding
JJB98_25850	COG3181	Tripartite tricarboxylate transporter family receptor
JJB98_25855	COG2080	2 iron, 2 sulfur cluster binding
JJB98_25860	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JJB98_25860	COG2010	Cytochrome c
JJB98_25870	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_25880	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JJB98_25905	COG0045	succinate-CoA ligase (ADP-forming) activity
JJB98_25905	COG1042	CoA-binding domain protein
JJB98_25905	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJB98_25930	COG0251	oxidation-reduction process
JJB98_25965	COG1024	Enoyl-CoA hydratase
JJB98_25970	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_25980	COG1960	acyl-CoA dehydrogenase activity
JJB98_25985	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_25995	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJB98_26005	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_26010	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_26020	COG0129	dihydroxy-acid dehydratase activity
JJB98_26030	COG2084	Dehydrogenase
JJB98_26035	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JJB98_26120	COG0454	-acetyltransferase
JJB98_26160	COG2197	response regulator
JJB98_26185	COG0010	Belongs to the arginase family
JJB98_26275	COG3845	ABC transporter
JJB98_26280	COG4603	Belongs to the binding-protein-dependent transport system permease family
JJB98_26285	COG1079	Belongs to the binding-protein-dependent transport system permease family
JJB98_26305	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JJB98_26305	COG2080	2 iron, 2 sulfur cluster binding
JJB98_26335	COG0235	Class ii aldolase
JJB98_26340	COG2095	MarC family integral membrane protein
JJB98_26355	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JJB98_26365	COG0776	regulation of translation
JJB98_26370	COG0183	Belongs to the thiolase family
JJB98_26375	COG2723	6-phospho-beta-galactosidase activity
JJB98_26410	COG4771	TonB-dependent receptor
JJB98_26415	COG3851	Histidine kinase
JJB98_26420	COG2197	response regulator
JJB98_26425	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
JJB98_26445	COG1131	(ABC) transporter
JJB98_26525	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_26570	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
JJB98_26575	COG3791	Glutathione-dependent formaldehyde-activating
JJB98_26600	COG0723	plastoquinol--plastocyanin reductase activity
JJB98_26610	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJB98_26630	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JJB98_26635	COG2986	histidine ammonia-lyase
JJB98_26640	COG1228	amidohydrolase
JJB98_26660	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_26675	COG2223	nitrite transmembrane transporter activity
JJB98_26685	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JJB98_26735	COG1017	nitric oxide dioxygenase activity
JJB98_26735	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJB98_26755	COG4235	cytochrome complex assembly
JJB98_26765	COG0437	4 iron, 4 sulfur cluster binding
JJB98_26830	COG2197	response regulator
JJB98_26860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_26865	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
JJB98_26905	COG0438	transferase activity, transferring glycosyl groups
JJB98_26910	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JJB98_26915	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJB98_26930	COG2244	polysaccharide biosynthetic process
JJB98_26940	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JJB98_26945	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JJB98_26970	COG2274	protein secretion by the type I secretion system
JJB98_26985	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JJB98_26990	COG1091	dTDP-4-dehydrorhamnose reductase activity
JJB98_26995	COG1088	dTDP-glucose 4,6-dehydratase activity
JJB98_27000	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
JJB98_27005	COG0489	protein tyrosine kinase activity
JJB98_27005	COG3206	protein involved in exopolysaccharide biosynthesis
JJB98_27035	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JJB98_27085	COG1260	myo-inositol-1-phosphate synthase
JJB98_27090	COG0406	alpha-ribazole phosphatase activity
JJB98_27105	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JJB98_27115	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JJB98_27125	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJB98_27135	COG0438	transferase activity, transferring glycosyl groups
JJB98_27160	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJB98_27180	COG1131	(ABC) transporter
JJB98_27200	COG2198	Histidine kinase
JJB98_27200	COG0784	Response regulator, receiver
JJB98_27200	COG5002	protein histidine kinase activity
JJB98_27205	COG0745	RESPONSE REGULATOR receiver
JJB98_27220	COG1879	ABC-type sugar transport system periplasmic component
JJB98_27225	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJB98_27230	COG1129	ABC transporter
JJB98_27235	COG0673	inositol 2-dehydrogenase activity
JJB98_27275	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_27285	COG0601	transmembrane transport
JJB98_27290	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_27295	COG4608	Belongs to the ABC transporter superfamily
JJB98_27330	COG1309	transcriptional regulator
JJB98_27345	COG2267	carboxylic ester hydrolase activity
JJB98_27375	COG0183	Belongs to the thiolase family
JJB98_27380	COG1960	acyl-CoA dehydrogenase activity
JJB98_27385	COG1960	acyl-CoA dehydrogenase activity
JJB98_27420	COG1022	Amp-dependent synthetase and ligase
JJB98_27450	COG3387	PFAM Glycoside hydrolase 15-related
JJB98_27460	COG2116	formate transmembrane transporter activity
JJB98_27470	COG1272	protein, Hemolysin III
JJB98_27480	COG0028	Belongs to the TPP enzyme family
JJB98_27500	COG0628	permease
JJB98_27510	COG0628	permease
JJB98_27525	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JJB98_27540	COG3387	PFAM Glycoside hydrolase 15-related
JJB98_27580	COG1845	cytochrome c oxidase, subunit III
JJB98_27585	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JJB98_27625	COG0437	4 iron, 4 sulfur cluster binding
JJB98_27645	COG0277	FAD linked oxidase domain protein
JJB98_27645	COG0247	lactate metabolic process
JJB98_27650	COG0028	Belongs to the TPP enzyme family
JJB98_27660	COG2124	cytochrome p450
JJB98_27665	COG1295	ribonuclease BN
JJB98_27670	COG3394	polysaccharide catabolic process
JJB98_27735	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_27740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJB98_27750	COG0723	plastoquinol--plastocyanin reductase activity
JJB98_27770	COG0464	growth
JJB98_27800	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
JJB98_27820	COG0523	cobalamin synthesis protein
JJB98_27825	COG0803	Belongs to the bacterial solute-binding protein 9 family
JJB98_27880	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_27890	COG0006	proline dipeptidase activity
JJB98_27905	COG3799	methylaspartate ammonia-lyase activity
JJB98_27915	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJB98_27920	COG1522	sequence-specific DNA binding
JJB98_27925	COG0686	Belongs to the AlaDH PNT family
JJB98_27930	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_27935	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJB98_27945	COG1522	sequence-specific DNA binding
JJB98_27950	COG0006	proline dipeptidase activity
JJB98_27955	COG1473	amidohydrolase
JJB98_27965	COG3842	ATPase activity
JJB98_27970	COG1177	transmembrane transport
JJB98_27975	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJB98_27990	COG2814	Major facilitator Superfamily
JJB98_28060	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JJB98_28070	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJB98_28150	COG3550	peptidyl-serine autophosphorylation
JJB98_28155	COG1396	sequence-specific DNA binding
JJB98_28185	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JJB98_28190	COG0459	protein refolding
JJB98_28195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_28210	COG3550	peptidyl-serine autophosphorylation
JJB98_28215	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JJB98_28220	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_28225	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JJB98_28235	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_28235	COG0604	alcohol dehydrogenase
JJB98_28235	COG3321	synthase
JJB98_28255	COG1309	transcriptional regulator
JJB98_28265	COG0583	DNA-binding transcription factor activity
JJB98_28275	COG1505	serine-type exopeptidase activity
JJB98_28280	COG0612	Peptidase, M16
JJB98_28285	COG0612	Peptidase, M16
JJB98_28325	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_28335	COG0842	Transport permease protein
JJB98_28355	COG0726	polysaccharide deacetylase
JJB98_28360	COG3153	acetyltransferase
JJB98_28395	COG2771	luxR family
JJB98_28430	COG2801	Transposase and inactivated derivatives
JJB98_28440	COG2086	electron transfer activity
JJB98_28445	COG3604	Transcriptional regulator
JJB98_28450	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JJB98_28455	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_28460	COG1301	dicarboxylic acid transport
JJB98_28470	COG0745	RESPONSE REGULATOR receiver
JJB98_28475	COG4964	Belongs to the GSP D family
JJB98_28500	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_28510	COG2801	Transposase and inactivated derivatives
JJB98_28520	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_28535	COG1011	Hydrolase
JJB98_28610	COG2030	dehydratase
JJB98_28625	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JJB98_28625	COG1618	nucleotide phosphatase activity, acting on free nucleotides
JJB98_28630	COG1278	Cold shock
JJB98_28670	COG0450	alkyl hydroperoxide reductase
JJB98_28680	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JJB98_28685	COG0644	oxidoreductase
JJB98_28690	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JJB98_28730	COG5554	nitrogen fixation
JJB98_28735	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JJB98_28755	COG1104	cysteine desulfurase activity
JJB98_28765	COG0316	Belongs to the HesB IscA family
JJB98_28780	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJB98_28785	COG5265	(ABC) transporter
JJB98_28805	COG5420	small protein containing a coiled-coil domain
JJB98_28820	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
JJB98_28825	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
JJB98_28830	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
JJB98_28845	COG0840	transmembrane signaling receptor activity
JJB98_28870	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JJB98_28875	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JJB98_28880	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJB98_28885	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JJB98_28890	COG0156	8-amino-7-oxononanoate synthase activity
JJB98_28895	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
JJB98_28900	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JJB98_28915	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JJB98_28920	COG0512	Glutamine amidotransferase of anthranilate synthase
JJB98_28920	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JJB98_28930	COG1960	acyl-CoA dehydrogenase activity
JJB98_28955	COG0604	alcohol dehydrogenase
JJB98_28975	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJB98_28980	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJB98_28990	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JJB98_28995	COG0028	Belongs to the TPP enzyme family
JJB98_28995	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
JJB98_29005	COG1126	abc transporter atp-binding protein
JJB98_29010	COG0765	amino acid transport
JJB98_29015	COG0765	amino acid transport
JJB98_29030	COG0788	formyltetrahydrofolate deformylase activity
JJB98_29060	COG3436	PFAM IS66 Orf2 family protein
JJB98_29075	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJB98_29105	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJB98_29145	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JJB98_29165	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JJB98_29165	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JJB98_29170	COG4770	biotin carboxylase activity
JJB98_29175	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJB98_29185	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJB98_29190	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJB98_29195	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JJB98_29200	COG1522	sequence-specific DNA binding
JJB98_29230	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JJB98_29255	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JJB98_29260	COG0583	DNA-binding transcription factor activity
JJB98_29280	COG0028	Belongs to the TPP enzyme family
JJB98_29315	COG1177	transmembrane transport
JJB98_29320	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJB98_29400	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JJB98_29415	COG1024	Enoyl-CoA hydratase
JJB98_29420	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_29430	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_29455	COG1024	Enoyl-CoA hydratase
JJB98_29470	COG0583	DNA-binding transcription factor activity
JJB98_29480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_29490	COG1126	abc transporter atp-binding protein
JJB98_29495	COG0765	amino acid transport
JJB98_29510	COG1024	Enoyl-CoA hydratase
JJB98_29530	COG1012	belongs to the aldehyde dehydrogenase family
JJB98_29535	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_29575	COG3846	protein secretion by the type IV secretion system
JJB98_29590	COG3451	type IV secretory pathway VirB4
JJB98_29605	COG4962	Type ii secretion system protein e
JJB98_29635	COG1278	Cold shock
JJB98_29645	COG0739	heme binding
JJB98_29645	COG0741	lytic transglycosylase activity
JJB98_29645	COG1196	nuclear chromosome segregation
JJB98_29650	COG0681	Belongs to the peptidase S26 family
JJB98_29690	COG5489	Protein of unknown function (DUF736)
JJB98_29720	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JJB98_29725	COG5489	Protein of unknown function (DUF736)
JJB98_29755	COG1181	Belongs to the D-alanine--D-alanine ligase family
JJB98_29785	COG3842	ATPase activity
JJB98_29790	COG0006	proline dipeptidase activity
JJB98_29805	COG1181	Belongs to the D-alanine--D-alanine ligase family
JJB98_29815	COG0154	amidase activity
JJB98_29830	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JJB98_29840	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJB98_29850	COG3842	ATPase activity
JJB98_29860	COG4977	sequence-specific DNA binding
JJB98_29865	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_29870	COG4311	Sarcosine oxidase, delta subunit
JJB98_29875	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JJB98_29875	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJB98_29910	COG5489	Protein of unknown function (DUF736)
JJB98_29955	COG1525	nuclease
JJB98_29960	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJB98_29990	COG2217	Heavy metal translocating P-type atpase
JJB98_30005	COG2010	Cytochrome c
JJB98_30020	COG3278	Belongs to the heme-copper respiratory oxidase family
JJB98_30030	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJB98_30040	COG4566	intracellular signal transduction
JJB98_30045	COG4191	Histidine kinase
JJB98_30060	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_30100	COG0459	protein refolding
JJB98_30150	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JJB98_30185	COG0444	Belongs to the ABC transporter superfamily
JJB98_30200	COG2188	Transcriptional regulator
JJB98_30205	COG2843	Capsule synthesis protein
JJB98_30220	COG3493	citrate carrier protein
JJB98_30355	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JJB98_30355	COG3264	Mechanosensitive ion channel
JJB98_30365	COG5001	Diguanylate cyclase
JJB98_30365	COG3300	MHYT domain
JJB98_30395	COG2226	methyltransferase
JJB98_30440	COG0405	Gamma-glutamyltransferase
JJB98_30450	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_30455	COG1126	abc transporter atp-binding protein
JJB98_30460	COG0765	amino acid transport
JJB98_30465	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJB98_30475	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJB98_30480	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJB98_30490	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JJB98_30495	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JJB98_30500	COG2080	2 iron, 2 sulfur cluster binding
JJB98_30505	COG1309	transcriptional regulator
JJB98_30510	COG0583	DNA-binding transcription factor activity
JJB98_30560	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JJB98_30585	COG1595	DNA-templated transcription, initiation
JJB98_30620	COG2201	protein-glutamate methylesterase activity
JJB98_30625	COG0643	Histidine kinase
JJB98_30625	COG2198	Histidine kinase
JJB98_30625	COG0784	Response regulator, receiver
JJB98_30630	COG0835	chemotaxis
JJB98_30635	COG0643	Histidine kinase
JJB98_30635	COG0784	Response regulator, receiver
JJB98_30635	COG2198	Histidine kinase
JJB98_30670	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JJB98_30695	COG0028	Belongs to the TPP enzyme family
JJB98_30700	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_30725	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JJB98_30740	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JJB98_30745	COG0583	DNA-binding transcription factor activity
JJB98_30750	COG1960	acyl-CoA dehydrogenase activity
JJB98_30760	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
JJB98_30770	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_30775	COG1272	protein, Hemolysin III
JJB98_30780	COG3106	COG3106 Predicted ATPase
JJB98_30785	COG3768	UPF0283 membrane protein
JJB98_30830	COG1278	Cold shock
JJB98_30850	COG0625	glutathione transferase activity
JJB98_30875	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJB98_30885	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JJB98_30890	COG1704	LemA family
JJB98_30895	COG1024	Enoyl-CoA hydratase
JJB98_30900	COG1960	acyl-CoA dehydrogenase activity
JJB98_30905	COG1960	acyl-CoA dehydrogenase activity
JJB98_30920	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_30925	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_30935	COG2205	protein histidine kinase activity
JJB98_30940	COG0745	RESPONSE REGULATOR receiver
JJB98_30975	COG0800	Aldolase
JJB98_30980	COG3734	2-keto-3-deoxy-galactonokinase
JJB98_30990	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JJB98_30995	COG3284	Transcriptional regulator
JJB98_31000	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JJB98_31050	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JJB98_31075	COG0564	pseudouridine synthase activity
JJB98_31080	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JJB98_31095	COG3706	GGDEF domain
JJB98_31100	COG1280	lysine exporter protein (LysE YggA)
JJB98_31125	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JJB98_31130	COG0358	DNA primase activity
JJB98_31160	COG1280	lysine exporter protein (LysE YggA)
JJB98_31170	COG0640	Transcriptional regulator
JJB98_31185	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJB98_31195	COG0505	Belongs to the CarA family
JJB98_31230	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JJB98_31235	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JJB98_31240	COG1522	sequence-specific DNA binding
JJB98_31245	COG0492	ferredoxin-NADP+ reductase activity
JJB98_31250	COG0583	DNA-binding transcription factor activity
JJB98_31255	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJB98_31295	COG5654	RES domain protein
JJB98_31320	COG2205	protein histidine kinase activity
JJB98_31335	COG0183	Belongs to the thiolase family
JJB98_31340	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJB98_31360	COG0625	glutathione transferase activity
JJB98_31375	COG2223	nitrite transmembrane transporter activity
JJB98_31380	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JJB98_31400	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JJB98_31405	COG0659	secondary active sulfate transmembrane transporter activity
JJB98_31415	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JJB98_31425	COG0436	Aminotransferase
JJB98_31430	COG0625	glutathione transferase activity
JJB98_31455	COG0667	Aldo Keto reductase
JJB98_31495	COG0583	DNA-binding transcription factor activity
JJB98_31510	COG0556	nucleotide-excision repair
JJB98_31575	COG2030	dehydratase
JJB98_31585	COG0012	GTP binding
JJB98_31590	COG0193	aminoacyl-tRNA hydrolase activity
JJB98_31595	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JJB98_31610	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JJB98_31620	COG1496	oxidoreductase activity
JJB98_31630	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JJB98_31640	COG1181	Belongs to the D-alanine--D-alanine ligase family
JJB98_31645	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JJB98_31655	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JJB98_31665	COG1942	4-Oxalocrotonate Tautomerase
JJB98_31670	COG0124	histidyl-tRNA synthetase
JJB98_31685	COG1846	Transcriptional regulator
JJB98_31690	COG0745	RESPONSE REGULATOR receiver
JJB98_31720	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JJB98_31725	COG1278	Cold shock
JJB98_31730	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JJB98_31735	COG0322	excinuclease ABC activity
JJB98_31740	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JJB98_31750	COG0314	molybdopterin synthase activity
JJB98_31755	COG2890	protein-(glutamine-N5) methyltransferase activity
JJB98_31765	COG1295	ribonuclease BN
JJB98_31770	COG2771	luxR family
JJB98_31770	COG2200	EAL domain
JJB98_31780	COG0745	RESPONSE REGULATOR receiver
JJB98_31785	COG0196	riboflavin kinase activity
JJB98_31790	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JJB98_31795	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JJB98_31805	COG0612	Peptidase, M16
JJB98_31810	COG0612	Peptidase, M16
JJB98_31825	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JJB98_31830	COG0742	ribosomal rna small subunit methyltransferase
JJB98_31835	COG1187	pseudouridine synthase activity
JJB98_31840	COG0590	tRNA wobble adenosine to inosine editing
JJB98_31845	COG0596	Alpha beta hydrolase
JJB98_31850	COG0151	Belongs to the GarS family
JJB98_31860	COG0326	Molecular chaperone. Has ATPase activity
JJB98_31875	COG2917	probably involved in intracellular septation
JJB98_31880	COG1570	exodeoxyribonuclease VII activity
JJB98_31905	COG1663	tetraacyldisaccharide 4'-kinase activity
JJB98_31910	COG1519	Transferase
JJB98_31930	COG0312	modulator of DNA gyrase
JJB98_31940	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JJB98_31955	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
JJB98_31960	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JJB98_31965	COG0463	Glycosyl transferase, family 2
JJB98_31975	COG3416	Protein conserved in bacteria
JJB98_31980	COG1376	ErfK ybiS ycfS ynhG family protein
JJB98_31980	COG1388	LysM domain
JJB98_31995	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JJB98_32000	COG0459	protein refolding
JJB98_32025	COG0154	amidase activity
JJB98_32040	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JJB98_32045	COG4178	(ABC) transporter
JJB98_32060	COG0247	lactate metabolic process
JJB98_32065	COG0277	FAD linked oxidase domain protein
JJB98_32075	COG0277	FAD linked oxidase domain protein
JJB98_32080	COG3474	cytochrome
JJB98_32105	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JJB98_32120	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JJB98_32145	COG0583	DNA-binding transcription factor activity
JJB98_32155	COG1741	Belongs to the pirin family
JJB98_32160	COG0655	NAD(P)H dehydrogenase (quinone) activity
JJB98_32165	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJB98_32185	COG1215	transferase activity, transferring glycosyl groups
JJB98_32210	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJB98_32220	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JJB98_32260	COG0583	DNA-binding transcription factor activity
JJB98_32275	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJB98_32285	COG1126	abc transporter atp-binding protein
JJB98_32290	COG0765	amino acid transport
JJB98_32295	COG0765	amino acid transport
JJB98_32325	COG1902	pentaerythritol trinitrate reductase activity
JJB98_32330	COG1012	belongs to the aldehyde dehydrogenase family
JJB98_32360	COG3119	arylsulfatase activity
JJB98_32365	COG2186	Transcriptional regulator
JJB98_32375	COG1175	transmembrane transport
JJB98_32385	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JJB98_32425	COG0583	DNA-binding transcription factor activity
JJB98_32435	COG1280	lysine exporter protein (LysE YggA)
JJB98_32445	COG2010	Cytochrome c
JJB98_32455	COG0071	Belongs to the small heat shock protein (HSP20) family
JJB98_32460	COG0069	glutamate synthase activity
JJB98_32460	COG0070	glutamate synthase
JJB98_32460	COG0067	glutamate synthase
JJB98_32485	COG0330	HflC and HflK could
JJB98_32495	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JJB98_32505	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
JJB98_32535	COG0251	oxidation-reduction process
JJB98_32560	COG0523	cobalamin synthesis protein
JJB98_32565	COG0803	Belongs to the bacterial solute-binding protein 9 family
JJB98_32575	COG1121	(ABC) transporter
JJB98_32585	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JJB98_32610	COG1028	Short-chain dehydrogenase reductase Sdr
JJB98_32625	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_32635	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJB98_32640	COG0326	Molecular chaperone. Has ATPase activity
JJB98_32685	COG0784	Response regulator, receiver
JJB98_32700	COG0778	Nitroreductase
JJB98_32705	COG1960	acyl-CoA dehydrogenase activity
JJB98_32710	COG1960	acyl-CoA dehydrogenase activity
JJB98_32715	COG1960	acyl-CoA dehydrogenase activity
JJB98_32740	COG0183	Belongs to the thiolase family
JJB98_32745	COG0318	PFAM AMP-dependent synthetase and ligase
JJB98_32755	COG2267	carboxylic ester hydrolase activity
JJB98_32765	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJB98_32770	COG1595	DNA-templated transcription, initiation
JJB98_32780	COG5285	phytanoyl-CoA dioxygenase
JJB98_32790	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JJB98_32825	COG0739	heme binding
JJB98_32845	COG0542	response to heat
JJB98_32865	COG2813	Specifically methylates the guanine in position
JJB98_32865	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JJB98_32870	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JJB98_32880	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JJB98_32885	COG0287	Prephenate dehydrogenase
JJB98_32915	COG2884	Cell division ATP-binding protein ftsE
JJB98_32925	COG2204	response regulator
JJB98_32940	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJB98_32950	COG0019	diaminopimelate decarboxylase activity
JJB98_32960	COG0165	Argininosuccinate lyase
JJB98_32965	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJB98_32975	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJB98_32980	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JJB98_32985	COG2086	electron transfer activity
JJB98_33010	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJB98_33040	COG3360	Dodecin
JJB98_33055	COG4608	Belongs to the ABC transporter superfamily
JJB98_33060	COG0444	Belongs to the ABC transporter superfamily
JJB98_33065	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJB98_33070	COG0601	transmembrane transport
JJB98_33080	COG1473	amidohydrolase
JJB98_33085	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_33100	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JJB98_33100	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JJB98_33130	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JJB98_33150	COG2226	methyltransferase
JJB98_33180	COG3220	belongs to the UPF0276 family
JJB98_33190	COG0659	secondary active sulfate transmembrane transporter activity
JJB98_33195	COG4232	protein-disulfide reductase activity
JJB98_33220	COG1881	PFAM PEBP family protein
JJB98_33225	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJB98_33250	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JJB98_33265	COG0537	adenosine 5'-monophosphoramidase activity
JJB98_33270	COG0517	IMP dehydrogenase activity
JJB98_33270	COG1994	Peptidase M50
JJB98_33305	COG2020	methyltransferase activity
JJB98_33335	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JJB98_33340	COG0156	8-amino-7-oxononanoate synthase activity
JJB98_33345	COG0784	Response regulator, receiver
JJB98_33345	COG2205	protein histidine kinase activity
JJB98_33365	COG0432	Pfam Uncharacterised protein family UPF0047
JJB98_33380	COG0356	it plays a direct role in the translocation of protons across the membrane
JJB98_33390	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JJB98_33395	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JJB98_33405	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJB98_33410	COG0612	Peptidase, M16
JJB98_33435	COG3346	SURF1 family
JJB98_33450	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JJB98_33460	COG0109	protoheme IX farnesyltransferase activity
JJB98_33465	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JJB98_33470	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JJB98_33490	COG0312	modulator of DNA gyrase
JJB98_33495	COG0681	Belongs to the peptidase S26 family
JJB98_33520	COG0625	glutathione transferase activity
JJB98_33525	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJB98_33525	COG1024	Enoyl-CoA hydratase
JJB98_33530	COG0183	Belongs to the thiolase family