locus-tag class description DM57_05080 PF00043 Glutathione S-transferase, C-terminal domain DM57_05080 PF13417 Glutathione S-transferase, N-terminal domain DM57_05105 PF06314 Acetoacetate decarboxylase (ADC) DM57_05110 PF01569 PAP2 superfamily DM57_05120 PF04954 Siderophore-interacting protein DM57_05120 PF08021 Siderophore-interacting FAD-binding domain DM57_05150 PF04055 Radical SAM superfamily DM57_05150 PF02310 B12 binding domain DM57_05165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_05165 PF03466 LysR substrate binding domain DM57_05170 PF00027 Cyclic nucleotide-binding domain DM57_05170 PF13545 Crp-like helix-turn-helix domain DM57_05175 PF00582 Universal stress protein family DM57_05185 PF00171 Aldehyde dehydrogenase family DM57_05215 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_05225 PF01227 GTP cyclohydrolase I DM57_05230 PF03466 LysR substrate binding domain DM57_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_05235 PF01494 FAD binding domain DM57_05240 PF01144 Coenzyme A transferase DM57_05245 PF01144 Coenzyme A transferase DM57_05250 PF10397 Adenylosuccinate lyase C-terminus DM57_05250 PF00206 Lyase DM57_05255 PF12146 Serine aminopeptidase, S33 DM57_05260 PF02627 Carboxymuconolactone decarboxylase family DM57_05265 PF07690 Major Facilitator Superfamily DM57_05285 PF09828 Chromate resistance exported protein DM57_05295 PF09828 Chromate resistance exported protein DM57_05315 PF08281 Sigma-70, region 4 DM57_05315 PF04542 Sigma-70 region 2 DM57_05320 PF17760 UvrA interaction domain DM57_05320 PF17755 UvrA DNA-binding domain DM57_05320 PF00005 ABC transporter DM57_05345 PF00816 H-NS histone family DM57_05350 PF00083 Sugar (and other) transporter DM57_05355 PF00512 His Kinase A (phospho-acceptor) domain DM57_05355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_05355 PF02743 Cache domain DM57_05360 PF02743 Cache domain DM57_05360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_05360 PF00512 His Kinase A (phospho-acceptor) domain DM57_05365 PF00072 Response regulator receiver domain DM57_05365 PF00158 Sigma-54 interaction domain DM57_05365 PF02954 Bacterial regulatory protein, Fis family DM57_05390 PF05506 Domain of unknown function (DUF756) DM57_05390 PF04185 Phosphoesterase family DM57_05410 PF13807 G-rich domain on putative tyrosine kinase DM57_05410 PF13614 AAA domain DM57_05410 PF02706 Chain length determinant protein DM57_05440 PF04151 Bacterial pre-peptidase C-terminal domain DM57_05440 PF09286 Pro-kumamolisin, activation domain DM57_05455 PF00072 Response regulator receiver domain DM57_05455 PF00990 Diguanylate cyclase, GGDEF domain DM57_05465 PF00561 alpha/beta hydrolase fold DM57_05470 PF00743 Flavin-binding monooxygenase-like DM57_05475 PF00106 short chain dehydrogenase DM57_05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_05485 PF03466 LysR substrate binding domain DM57_05495 PF01527 Transposase DM57_05505 PF02798 Glutathione S-transferase, N-terminal domain DM57_05520 PF01773 Na+ dependent nucleoside transporter N-terminus DM57_05520 PF07662 Na+ dependent nucleoside transporter C-terminus DM57_05525 PF01791 DeoC/LacD family aldolase DM57_05540 PF00591 Glycosyl transferase family, a/b domain DM57_05540 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DM57_05540 PF02885 Glycosyl transferase family, helical bundle domain DM57_05545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DM57_05550 PF04972 BON domain DM57_05555 PF00294 pfkB family carbohydrate kinase DM57_05560 PF00871 Acetokinase family DM57_05565 PF01515 Phosphate acetyl/butaryl transferase DM57_05570 PF00561 alpha/beta hydrolase fold DM57_05570 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DM57_05575 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM57_05575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_05580 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DM57_05595 PF00119 ATP synthase A chain DM57_05600 PF00137 ATP synthase subunit C DM57_05605 PF00430 ATP synthase B/B' CF(0) DM57_05610 PF00306 ATP synthase alpha/beta chain, C terminal domain DM57_05610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_05610 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM57_05620 PF00107 Zinc-binding dehydrogenase DM57_05620 PF08240 Alcohol dehydrogenase GroES-like domain DM57_05635 PF02203 Tar ligand binding domain homologue DM57_05635 PF00672 HAMP domain DM57_05635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_05640 PF00072 Response regulator receiver domain DM57_05640 PF13426 PAS domain DM57_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_05650 PF00005 ABC transporter DM57_05655 PF13533 Biotin-lipoyl like DM57_05660 PF13533 Biotin-lipoyl like DM57_05665 PF02321 Outer membrane efflux protein DM57_05670 PF00440 Bacterial regulatory proteins, tetR family DM57_05675 PF00582 Universal stress protein family DM57_05690 PF00005 ABC transporter DM57_05700 PF02321 Outer membrane efflux protein DM57_05700 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DM57_05705 PF00672 HAMP domain DM57_05705 PF02203 Tar ligand binding domain homologue DM57_05705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_05710 PF00009 Elongation factor Tu GTP binding domain DM57_05735 PF03641 Possible lysine decarboxylase DM57_05760 PF08240 Alcohol dehydrogenase GroES-like domain DM57_05765 PF13545 Crp-like helix-turn-helix domain DM57_05765 PF00027 Cyclic nucleotide-binding domain DM57_05770 PF00106 short chain dehydrogenase DM57_05780 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DM57_05780 PF00753 Metallo-beta-lactamase superfamily DM57_05780 PF10996 Beta-Casp domain DM57_05795 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_05795 PF01610 Transposase DM57_05795 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_05800 PF00196 Bacterial regulatory proteins, luxR family DM57_05800 PF00072 Response regulator receiver domain DM57_05805 PF17200 Single Cache domain 2 DM57_05805 PF07730 Histidine kinase DM57_05810 PF09383 NIL domain DM57_05810 PF00005 ABC transporter DM57_05830 PF00583 Acetyltransferase (GNAT) family DM57_05840 PF01425 Amidase DM57_05845 PF13609 Gram-negative porin DM57_05870 PF17092 Penicillin-binding protein OB-like domain DM57_05870 PF00912 Transglycosylase DM57_05870 PF00905 Penicillin binding protein transpeptidase domain DM57_05895 PF04976 DMSO reductase anchor subunit (DmsC) DM57_05900 PF12800 4Fe-4S binding domain DM57_05900 PF13247 4Fe-4S dicluster domain DM57_05905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM57_05905 PF01568 Molydopterin dinucleotide binding domain DM57_05905 PF00384 Molybdopterin oxidoreductase DM57_05920 PF05853 beta-keto acid cleavage enzyme DM57_05925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DM57_05930 PF00107 Zinc-binding dehydrogenase DM57_05930 PF08240 Alcohol dehydrogenase GroES-like domain DM57_05940 PF00196 Bacterial regulatory proteins, luxR family DM57_05940 PF17874 MalT-like TPR region DM57_05945 PF00501 AMP-binding enzyme DM57_05945 PF13193 AMP-binding enzyme C-terminal domain DM57_05950 PF13609 Gram-negative porin DM57_05955 PF00011 Hsp20/alpha crystallin family DM57_05965 PF01769 Divalent cation transporter DM57_05965 PF03448 MgtE intracellular N domain DM57_05965 PF00571 CBS domain DM57_05975 PF00916 Sulfate permease family DM57_05975 PF01740 STAS domain DM57_05990 PF03477 ATP cone domain DM57_05990 PF00317 Ribonucleotide reductase, all-alpha domain DM57_05990 PF02867 Ribonucleotide reductase, barrel domain DM57_06005 PF14759 Reductase C-terminal DM57_06005 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_06010 PF05199 GMC oxidoreductase DM57_06020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06020 PF03466 LysR substrate binding domain DM57_06035 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal DM57_06035 PF00676 Dehydrogenase E1 component DM57_06040 PF02780 Transketolase, C-terminal domain DM57_06040 PF02779 Transketolase, pyrimidine binding domain DM57_06045 PF00364 Biotin-requiring enzyme DM57_06045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DM57_06045 PF02817 e3 binding domain DM57_06050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM57_06050 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_06065 PF01613 Flavin reductase like domain DM57_06080 PF01648 4'-phosphopantetheinyl transferase superfamily DM57_06085 PF00296 Luciferase-like monooxygenase DM57_06090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM57_06090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM57_06100 PF13085 2Fe-2S iron-sulfur cluster binding domain DM57_06105 PF02666 Phosphatidylserine decarboxylase DM57_06115 PF00664 ABC transporter transmembrane region DM57_06115 PF00005 ABC transporter DM57_06135 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DM57_06140 PF16861 Carbamoyltransferase C-terminus DM57_06140 PF02543 Carbamoyltransferase N-terminus DM57_06160 PF00158 Sigma-54 interaction domain DM57_06160 PF02954 Bacterial regulatory protein, Fis family DM57_06160 PF01590 GAF domain DM57_06165 PF00072 Response regulator receiver domain DM57_06165 PF02954 Bacterial regulatory protein, Fis family DM57_06165 PF00158 Sigma-54 interaction domain DM57_06180 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_06180 PF00072 Response regulator receiver domain DM57_06180 PF01627 Hpt domain DM57_06180 PF00512 His Kinase A (phospho-acceptor) domain DM57_06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_06185 PF16363 GDP-mannose 4,6 dehydratase DM57_06190 PF13439 Glycosyltransferase Family 4 DM57_06190 PF00534 Glycosyl transferases group 1 DM57_06200 PF00106 short chain dehydrogenase DM57_06240 PF00202 Aminotransferase class-III DM57_06255 PF04055 Radical SAM superfamily DM57_06255 PF06463 Molybdenum Cofactor Synthesis C DM57_06260 PF02401 LytB protein DM57_06265 PF00535 Glycosyl transferase family 2 DM57_06275 PF01370 NAD dependent epimerase/dehydratase family DM57_06280 PF00708 Acylphosphatase DM57_06295 PF03972 MmgE/PrpD family DM57_06335 PF01527 Transposase DM57_06340 PF00270 DEAD/DEAH box helicase DM57_06340 PF00271 Helicase conserved C-terminal domain DM57_06340 PF03880 DbpA RNA binding domain DM57_06355 PF07687 Peptidase dimerisation domain DM57_06355 PF01546 Peptidase family M20/M25/M40 DM57_06360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06360 PF03466 LysR substrate binding domain DM57_06385 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_06390 PF01266 FAD dependent oxidoreductase DM57_06395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06395 PF03466 LysR substrate binding domain DM57_06400 PF00106 short chain dehydrogenase DM57_06420 PF17678 Glycosyl hydrolase family 92 N-terminal domain DM57_06420 PF07971 Glycosyl hydrolase family 92 DM57_06435 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal DM57_06435 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal DM57_06440 PF13537 Glutamine amidotransferase domain DM57_06440 PF00733 Asparagine synthase DM57_06445 PF00107 Zinc-binding dehydrogenase DM57_06445 PF08240 Alcohol dehydrogenase GroES-like domain DM57_06455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06455 PF03466 LysR substrate binding domain DM57_06495 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_06495 PF17871 AAA lid domain DM57_06495 PF00004 ATPase family associated with various cellular activities (AAA) DM57_06495 PF07724 AAA domain (Cdc48 subfamily) DM57_06500 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_06500 PF07724 AAA domain (Cdc48 subfamily) DM57_06500 PF00004 ATPase family associated with various cellular activities (AAA) DM57_06500 PF17871 AAA lid domain DM57_06535 PF04717 Type VI secretion system, phage-baseplate injector DM57_06565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06565 PF03466 LysR substrate binding domain DM57_06570 PF02525 Flavodoxin-like fold DM57_06580 PF01053 Cys/Met metabolism PLP-dependent enzyme DM57_06610 PF02626 Carboxyltransferase domain, subdomain A and B DM57_06620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM57_06620 PF02785 Biotin carboxylase C-terminal domain DM57_06620 PF00289 Biotin carboxylase, N-terminal domain DM57_06625 PF00364 Biotin-requiring enzyme DM57_06630 PF03746 LamB/YcsF family DM57_06635 PF03466 LysR substrate binding domain DM57_06635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06640 PF01804 Penicillin amidase DM57_06645 PF00561 alpha/beta hydrolase fold DM57_06660 PF02203 Tar ligand binding domain homologue DM57_06660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_06660 PF00672 HAMP domain DM57_06670 PF00158 Sigma-54 interaction domain DM57_06670 PF06506 Propionate catabolism activator DM57_06670 PF02954 Bacterial regulatory protein, Fis family DM57_06680 PF00285 Citrate synthase, C-terminal domain DM57_06685 PF00330 Aconitase family (aconitate hydratase) DM57_06685 PF00694 Aconitase C-terminal domain DM57_06690 PF04303 PrpF protein DM57_06715 PF13186 Iron-sulfur cluster-binding domain DM57_06715 PF04055 Radical SAM superfamily DM57_06720 PF02203 Tar ligand binding domain homologue DM57_06720 PF00672 HAMP domain DM57_06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_06735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06735 PF03466 LysR substrate binding domain DM57_06745 PF02308 MgtC family DM57_06770 PF00403 Heavy-metal-associated domain DM57_06805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DM57_06825 PF03466 LysR substrate binding domain DM57_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06835 PF02322 Cytochrome bd terminal oxidase subunit II DM57_06840 PF01654 Cytochrome bd terminal oxidase subunit I DM57_06845 PF01212 Beta-eliminating lyase DM57_06855 PF17092 Penicillin-binding protein OB-like domain DM57_06855 PF00912 Transglycosylase DM57_06855 PF00905 Penicillin binding protein transpeptidase domain DM57_06860 PF03458 UPF0126 domain DM57_06865 PF00005 ABC transporter DM57_06875 PF01032 FecCD transport family DM57_06880 PF01497 Periplasmic binding protein DM57_06885 PF05171 Haemin-degrading HemS.ChuX domain DM57_06890 PF00593 TonB dependent receptor DM57_06890 PF04886 PT repeat DM57_06890 PF07715 TonB-dependent Receptor Plug Domain DM57_06900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_06900 PF03466 LysR substrate binding domain DM57_06910 PF08402 TOBE domain DM57_06910 PF00005 ABC transporter DM57_06930 PF13609 Gram-negative porin DM57_06940 PF02502 Ribose/Galactose Isomerase DM57_06945 PF00005 ABC transporter DM57_06950 PF02653 Branched-chain amino acid transport system / permease component DM57_06955 PF13407 Periplasmic binding protein domain DM57_06965 PF08240 Alcohol dehydrogenase GroES-like domain DM57_06965 PF00107 Zinc-binding dehydrogenase DM57_06970 PF02733 Dak1 domain DM57_06975 PF02734 DAK2 domain DM57_06980 PF00583 Acetyltransferase (GNAT) family DM57_07000 PF02472 Biopolymer transport protein ExbD/TolR DM57_07005 PF01618 MotA/TolQ/ExbB proton channel family DM57_07020 PF01177 Asp/Glu/Hydantoin racemase DM57_07025 PF00210 Ferritin-like domain DM57_07035 PF03350 Uncharacterized protein family, UPF0114 DM57_07045 PF16177 Acetyl-coenzyme A synthetase N-terminus DM57_07045 PF00501 AMP-binding enzyme DM57_07045 PF13193 AMP-binding enzyme C-terminal domain DM57_07055 PF00474 Sodium:solute symporter family DM57_07065 PF13276 HTH-like domain DM57_07065 PF00665 Integrase core domain DM57_07065 PF13333 Integrase core domain DM57_07075 PF13192 Thioredoxin domain DM57_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_07080 PF10417 C-terminal domain of 1-Cys peroxiredoxin DM57_07080 PF00578 AhpC/TSA family DM57_07090 PF00881 Nitroreductase family DM57_07100 PF14403 Circularly permuted ATP-grasp type 2 DM57_07120 PF14403 Circularly permuted ATP-grasp type 2 DM57_07120 PF04168 A predicted alpha-helical domain with a conserved ER motif. DM57_07125 PF08379 Bacterial transglutaminase-like N-terminal region DM57_07125 PF01841 Transglutaminase-like superfamily DM57_07135 PF07690 Major Facilitator Superfamily DM57_07140 PF04632 Fusaric acid resistance protein family DM57_07145 PF01965 DJ-1/PfpI family DM57_07145 PF12833 Helix-turn-helix domain DM57_07150 PF01965 DJ-1/PfpI family DM57_07155 PF00266 Aminotransferase class-V DM57_07160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_07160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_07190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DM57_07190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DM57_07205 PF01527 Transposase DM57_07210 PF17287 POTRA domain DM57_07210 PF08479 POTRA domain, ShlB-type DM57_07210 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DM57_07215 PF05860 haemagglutination activity domain DM57_07215 PF13332 Hemagglutinin repeat DM57_07215 PF05594 Haemagluttinin repeat DM57_07215 PF13018 Extended Signal Peptide of Type V secretion system DM57_07220 PF00330 Aconitase family (aconitate hydratase) DM57_07220 PF00694 Aconitase C-terminal domain DM57_07225 PF03972 MmgE/PrpD family DM57_07240 PF00056 lactate/malate dehydrogenase, NAD binding domain DM57_07240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DM57_07245 PF07702 UTRA domain DM57_07245 PF00392 Bacterial regulatory proteins, gntR family DM57_07250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DM57_07260 PF00890 FAD binding domain DM57_07260 PF02910 Fumarate reductase flavoprotein C-term DM57_07265 PF13085 2Fe-2S iron-sulfur cluster binding domain DM57_07270 PF03937 Flavinator of succinate dehydrogenase DM57_07275 PF00285 Citrate synthase, C-terminal domain DM57_07295 PF01527 Transposase DM57_07310 PF07350 Protein of unknown function (DUF1479) DM57_07315 PF00456 Transketolase, thiamine diphosphate binding domain DM57_07315 PF17831 Pyruvate dehydrogenase E1 component middle domain DM57_07320 PF01037 Lrp/AsnC ligand binding domain DM57_07335 PF00330 Aconitase family (aconitate hydratase) DM57_07345 PF00694 Aconitase C-terminal domain DM57_07350 PF00180 Isocitrate/isopropylmalate dehydrogenase DM57_07360 PF01118 Semialdehyde dehydrogenase, NAD binding domain DM57_07360 PF02774 Semialdehyde dehydrogenase, dimerisation domain DM57_07370 PF01416 tRNA pseudouridine synthase DM57_07375 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DM57_07380 PF00291 Pyridoxal-phosphate dependent enzyme DM57_07385 PF01555 DNA methylase DM57_07390 PF00290 Tryptophan synthase alpha chain DM57_07395 PF01039 Carboxyl transferase domain DM57_07395 PF17848 Acetyl-coA carboxylase zinc finger domain DM57_07400 PF02875 Mur ligase family, glutamate ligase domain DM57_07400 PF08245 Mur ligase middle domain DM57_07415 PF00156 Phosphoribosyl transferase domain DM57_07420 PF01053 Cys/Met metabolism PLP-dependent enzyme DM57_07430 PF01370 NAD dependent epimerase/dehydratase family DM57_07435 PF16363 GDP-mannose 4,6 dehydratase DM57_07440 PF01757 Acyltransferase family DM57_07450 PF14667 Polysaccharide biosynthesis C-terminal domain DM57_07450 PF01943 Polysaccharide biosynthesis protein DM57_07455 PF00534 Glycosyl transferases group 1 DM57_07455 PF13439 Glycosyltransferase Family 4 DM57_07470 PF00483 Nucleotidyl transferase DM57_07480 PF01757 Acyltransferase family DM57_07490 PF13609 Gram-negative porin DM57_07495 PF03631 Virulence factor BrkB DM57_07505 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DM57_07525 PF00296 Luciferase-like monooxygenase DM57_07530 PF00296 Luciferase-like monooxygenase DM57_07540 PF00005 ABC transporter DM57_07555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM57_07555 PF00384 Molybdopterin oxidoreductase DM57_07555 PF01568 Molydopterin dinucleotide binding domain DM57_07565 PF13247 4Fe-4S dicluster domain DM57_07565 PF09163 Formate dehydrogenase N, transmembrane DM57_07570 PF01292 Prokaryotic cytochrome b561 DM57_07575 PF04216 Protein involved in formate dehydrogenase formation DM57_07580 PF03841 L-seryl-tRNA selenium transferase DM57_07580 PF12390 Selenocysteine synthase N terminal DM57_07585 PF09107 Elongation factor SelB, winged helix DM57_07585 PF09106 Elongation factor SelB, winged helix DM57_07585 PF03144 Elongation factor Tu domain 2 DM57_07585 PF00009 Elongation factor Tu GTP binding domain DM57_07605 PF01425 Amidase DM57_07635 PF00067 Cytochrome P450 DM57_07665 PF02954 Bacterial regulatory protein, Fis family DM57_07665 PF00158 Sigma-54 interaction domain DM57_07665 PF00072 Response regulator receiver domain DM57_07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_07675 PF00512 His Kinase A (phospho-acceptor) domain DM57_07685 PF07690 Major Facilitator Superfamily DM57_07690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_07690 PF03466 LysR substrate binding domain DM57_07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_07705 PF03466 LysR substrate binding domain DM57_07710 PF03328 HpcH/HpaI aldolase/citrate lyase family DM57_07715 PF01575 MaoC like domain DM57_07720 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DM57_07720 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DM57_07725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_07725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_07725 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_07730 PF00202 Aminotransferase class-III DM57_07735 PF00668 Condensation domain DM57_07735 PF13193 AMP-binding enzyme C-terminal domain DM57_07735 PF00550 Phosphopantetheine attachment site DM57_07735 PF00501 AMP-binding enzyme DM57_07735 PF00975 Thioesterase domain DM57_07750 PF00550 Phosphopantetheine attachment site DM57_07750 PF00668 Condensation domain DM57_07750 PF13193 AMP-binding enzyme C-terminal domain DM57_07750 PF00501 AMP-binding enzyme DM57_07765 PF01311 Bacterial export proteins, family 1 DM57_07775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_07775 PF18269 T3SS EscN ATPase C-terminal domain DM57_07775 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM57_07805 PF01312 FlhB HrpN YscU SpaS Family DM57_07810 PF00771 FHIPEP family DM57_07825 PF00813 FliP family DM57_07830 PF01313 Bacterial export proteins, family 3 DM57_07860 PF12833 Helix-turn-helix domain DM57_07890 PF00486 Transcriptional regulatory protein, C terminal DM57_07890 PF00072 Response regulator receiver domain DM57_07900 PF00437 Type II/IV secretion system protein DM57_07910 PF07655 Secretin N-terminal domain DM57_07910 PF00263 Bacterial type II and III secretion system protein DM57_07925 PF00437 Type II/IV secretion system protein DM57_07980 PF00491 Arginase family DM57_08000 PF13657 HipA N-terminal domain DM57_08000 PF07804 HipA-like C-terminal domain DM57_08015 PF03170 Bacterial cellulose synthase subunit DM57_08020 PF01270 Glycosyl hydrolases family 8 DM57_08045 PF07238 PilZ domain DM57_08045 PF00535 Glycosyl transferase family 2 DM57_08045 PF03552 Cellulose synthase DM57_08050 PF11658 Cellulose biosynthesis protein BcsG DM57_08070 PF00005 ABC transporter DM57_08075 PF00528 Binding-protein-dependent transport system inner membrane component DM57_08080 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_08080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM57_08085 PF00765 Autoinducer synthase DM57_08100 PF13193 AMP-binding enzyme C-terminal domain DM57_08100 PF00501 AMP-binding enzyme DM57_08105 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA DM57_08110 PF01384 Phosphate transporter family DM57_08125 PF01037 Lrp/AsnC ligand binding domain DM57_08130 PF01810 LysE type translocator DM57_08135 PF00082 Subtilase family DM57_08135 PF09286 Pro-kumamolisin, activation domain DM57_08150 PF01070 FMN-dependent dehydrogenase DM57_08160 PF00083 Sugar (and other) transporter DM57_08175 PF07504 Fungalysin/Thermolysin Propeptide Motif DM57_08175 PF01483 Proprotein convertase P-domain DM57_08175 PF02868 Thermolysin metallopeptidase, alpha-helical domain DM57_08175 PF01447 Thermolysin metallopeptidase, catalytic domain DM57_08205 PF01514 Secretory protein of YscJ/FliF family DM57_08215 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DM57_08220 PF09480 Type III secretion system protein PrgH-EprH (PrgH) DM57_08235 PF07201 HrpJ-like domain DM57_08240 PF00771 FHIPEP family DM57_08250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_08250 PF18269 T3SS EscN ATPase C-terminal domain DM57_08250 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM57_08270 PF00813 FliP family DM57_08275 PF01313 Bacterial export proteins, family 3 DM57_08280 PF01311 Bacterial export proteins, family 1 DM57_08285 PF01312 FlhB HrpN YscU SpaS Family DM57_08290 PF07720 Tetratricopeptide repeat DM57_08295 PF04888 Secretion system effector C (SseC) like family DM57_08295 PF16535 Type III cell invasion protein SipB DM57_08300 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) DM57_08305 PF00816 H-NS histone family DM57_08310 PF06511 Type III secretion systems tip complex components DM57_08320 PF00550 Phosphopantetheine attachment site DM57_08325 PF01464 Transglycosylase SLT domain DM57_08330 PF07487 SopE GEF domain DM57_08340 PF09119 SicP binding DM57_08350 PF00196 Bacterial regulatory proteins, luxR family DM57_08350 PF00072 Response regulator receiver domain DM57_08390 PF10636 Hemin uptake protein hemP DM57_08400 PF02678 Pirin DM57_08400 PF05726 Pirin C-terminal cupin domain DM57_08405 PF03466 LysR substrate binding domain DM57_08405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_08415 PF07690 Major Facilitator Superfamily DM57_08420 PF00440 Bacterial regulatory proteins, tetR family DM57_08420 PF08362 YcdC-like protein, C-terminal region DM57_08425 PF09339 IclR helix-turn-helix domain DM57_08425 PF01614 Bacterial transcriptional regulator DM57_08430 PF02803 Thiolase, C-terminal domain DM57_08430 PF00108 Thiolase, N-terminal domain DM57_08440 PF08447 PAS fold DM57_08440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_08450 PF00355 Rieske [2Fe-2S] domain DM57_08455 PF00355 Rieske [2Fe-2S] domain DM57_08465 PF00171 Aldehyde dehydrogenase family DM57_08470 PF00202 Aminotransferase class-III DM57_08475 PF00155 Aminotransferase class I and II DM57_08475 PF00392 Bacterial regulatory proteins, gntR family DM57_08480 PF03606 C4-dicarboxylate anaerobic carrier DM57_08485 PF01614 Bacterial transcriptional regulator DM57_08485 PF09339 IclR helix-turn-helix domain DM57_08495 PF13609 Gram-negative porin DM57_08515 PF02769 AIR synthase related protein, C-terminal domain DM57_08515 PF00586 AIR synthase related protein, N-terminal domain DM57_08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_08545 PF03466 LysR substrate binding domain DM57_08550 PF07859 alpha/beta hydrolase fold DM57_08555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_08555 PF00529 HlyD membrane-fusion protein of T1SS DM57_08560 PF00873 AcrB/AcrD/AcrF family DM57_08565 PF02321 Outer membrane efflux protein DM57_08570 PF00375 Sodium:dicarboxylate symporter family DM57_08590 PF00501 AMP-binding enzyme DM57_08595 PF00698 Acyl transferase domain DM57_08605 PF00501 AMP-binding enzyme DM57_08605 PF13193 AMP-binding enzyme C-terminal domain DM57_08610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DM57_08610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DM57_08620 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DM57_08620 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DM57_08625 PF08659 KR domain DM57_08625 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_08625 PF16197 Ketoacyl-synthetase C-terminal extension DM57_08625 PF00550 Phosphopantetheine attachment site DM57_08625 PF14765 Polyketide synthase dehydratase DM57_08625 PF08242 Methyltransferase domain DM57_08625 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_08630 PF00171 Aldehyde dehydrogenase family DM57_08635 PF00202 Aminotransferase class-III DM57_08650 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_08650 PF00550 Phosphopantetheine attachment site DM57_08650 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_08650 PF16197 Ketoacyl-synthetase C-terminal extension DM57_08650 PF00668 Condensation domain DM57_08650 PF00698 Acyl transferase domain DM57_08660 PF00196 Bacterial regulatory proteins, luxR family DM57_08660 PF03472 Autoinducer binding domain DM57_08665 PF03180 NLPA lipoprotein DM57_08670 PF00296 Luciferase-like monooxygenase DM57_08675 PF09383 NIL domain DM57_08675 PF00005 ABC transporter DM57_08680 PF00528 Binding-protein-dependent transport system inner membrane component DM57_08690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_08690 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DM57_08700 PF07729 FCD domain DM57_08700 PF00392 Bacterial regulatory proteins, gntR family DM57_08705 PF02754 Cysteine-rich domain DM57_08710 PF11870 Domain of unknown function (DUF3390) DM57_08710 PF02589 LUD domain DM57_08710 PF13183 4Fe-4S dicluster domain DM57_08715 PF02589 LUD domain DM57_08720 PF02652 L-lactate permease DM57_08725 PF07681 DoxX DM57_08730 PF07690 Major Facilitator Superfamily DM57_08735 PF07690 Major Facilitator Superfamily DM57_08740 PF02615 Malate/L-lactate dehydrogenase DM57_08745 PF00171 Aldehyde dehydrogenase family DM57_08750 PF13520 Amino acid permease DM57_08760 PF00701 Dihydrodipicolinate synthetase family DM57_08765 PF05544 Proline racemase DM57_08770 PF01266 FAD dependent oxidoreductase DM57_08780 PF04324 BFD-like [2Fe-2S] binding domain DM57_08780 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_08805 PF01527 Transposase DM57_08825 PF01165 Ribosomal protein S21 DM57_08830 PF00313 'Cold-shock' DNA-binding domain DM57_08850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM57_08850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM57_08865 PF00360 Phytochrome region DM57_08865 PF08446 PAS fold DM57_08865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_08865 PF01590 GAF domain DM57_08865 PF00512 His Kinase A (phospho-acceptor) domain DM57_08870 PF00072 Response regulator receiver domain DM57_08875 PF17200 Single Cache domain 2 DM57_08875 PF07730 Histidine kinase DM57_08880 PF07690 Major Facilitator Superfamily DM57_08895 PF00732 GMC oxidoreductase DM57_08895 PF05199 GMC oxidoreductase DM57_08900 PF00171 Aldehyde dehydrogenase family DM57_08905 PF13977 BetI-type transcriptional repressor, C-terminal DM57_08905 PF00440 Bacterial regulatory proteins, tetR family DM57_08910 PF01527 Transposase DM57_08920 PF00561 alpha/beta hydrolase fold DM57_08925 PF03033 Glycosyltransferase family 28 N-terminal domain DM57_08930 PF00535 Glycosyl transferase family 2 DM57_08945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_08945 PF00529 HlyD membrane-fusion protein of T1SS DM57_08950 PF00326 Prolyl oligopeptidase family DM57_08950 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DM57_08960 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_08975 PF00266 Aminotransferase class-V DM57_08980 PF01292 Prokaryotic cytochrome b561 DM57_08995 PF04143 Sulphur transport DM57_09005 PF00583 Acetyltransferase (GNAT) family DM57_09020 PF04072 Leucine carboxyl methyltransferase DM57_09025 PF03150 Di-haem cytochrome c peroxidase DM57_09035 PF04909 Amidohydrolase DM57_09040 PF07702 UTRA domain DM57_09040 PF00392 Bacterial regulatory proteins, gntR family DM57_09055 PF01037 Lrp/AsnC ligand binding domain DM57_09060 PF00291 Pyridoxal-phosphate dependent enzyme DM57_09070 PF12833 Helix-turn-helix domain DM57_09070 PF12852 Cupin DM57_09090 PF02913 FAD linked oxidases, C-terminal domain DM57_09090 PF01565 FAD binding domain DM57_09095 PF02272 DHHA1 domain DM57_09095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM57_09095 PF01411 tRNA synthetases class II (A) DM57_09105 PF08264 Anticodon-binding domain of tRNA DM57_09105 PF00133 tRNA synthetases class I (I, L, M and V) DM57_09120 PF04185 Phosphoesterase family DM57_09130 PF00144 Beta-lactamase DM57_09135 PF02028 BCCT, betaine/carnitine/choline family transporter DM57_09145 PF01112 Asparaginase DM57_09150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_09155 PF00528 Binding-protein-dependent transport system inner membrane component DM57_09160 PF12911 N-terminal TM domain of oligopeptide transport permease C DM57_09160 PF00528 Binding-protein-dependent transport system inner membrane component DM57_09180 PF00775 Dioxygenase DM57_09180 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DM57_09185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_09185 PF03466 LysR substrate binding domain DM57_09205 PF00360 Phytochrome region DM57_09205 PF00990 Diguanylate cyclase, GGDEF domain DM57_09205 PF01590 GAF domain DM57_09205 PF00563 EAL domain DM57_09215 PF00793 DAHP synthetase I family DM57_09235 PF13520 Amino acid permease DM57_09240 PF01527 Transposase DM57_09250 PF00270 DEAD/DEAH box helicase DM57_09250 PF08494 DEAD/H associated DM57_09250 PF00271 Helicase conserved C-terminal domain DM57_09270 PF02321 Outer membrane efflux protein DM57_09285 PF00005 ABC transporter DM57_09285 PF03412 Peptidase C39 family DM57_09285 PF00664 ABC transporter transmembrane region DM57_09305 PF01527 Transposase DM57_09325 PF01593 Flavin containing amine oxidoreductase DM57_09340 PF01205 Uncharacterized protein family UPF0029 DM57_09340 PF09186 Domain of unknown function (DUF1949) DM57_09345 PF04542 Sigma-70 region 2 DM57_09345 PF08281 Sigma-70, region 4 DM57_09350 PF00501 AMP-binding enzyme DM57_09375 PF00975 Thioesterase domain DM57_09375 PF00550 Phosphopantetheine attachment site DM57_09375 PF13193 AMP-binding enzyme C-terminal domain DM57_09375 PF00501 AMP-binding enzyme DM57_09375 PF00668 Condensation domain DM57_09385 PF01527 Transposase DM57_09395 PF04960 Glutaminase DM57_09405 PF00486 Transcriptional regulatory protein, C terminal DM57_09405 PF00072 Response regulator receiver domain DM57_09410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_09410 PF00512 His Kinase A (phospho-acceptor) domain DM57_09410 PF00672 HAMP domain DM57_09415 PF01734 Patatin-like phospholipase DM57_09425 PF00034 Cytochrome c DM57_09455 PF18029 Glyoxalase-like domain DM57_09470 PF00512 His Kinase A (phospho-acceptor) domain DM57_09470 PF08521 Two-component sensor kinase N-terminal DM57_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_09475 PF00486 Transcriptional regulatory protein, C terminal DM57_09475 PF00072 Response regulator receiver domain DM57_09500 PF01965 DJ-1/PfpI family DM57_09545 PF01527 Transposase DM57_09560 PF06224 Winged helix DNA-binding domain DM57_09565 PF07690 Major Facilitator Superfamily DM57_09575 PF01204 Trehalase DM57_09585 PF00510 Cytochrome c oxidase subunit III DM57_09605 PF00733 Asparagine synthase DM57_09605 PF13537 Glutamine amidotransferase domain DM57_09615 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM57_09620 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_09620 PF01799 [2Fe-2S] binding domain DM57_09625 PF12833 Helix-turn-helix domain DM57_09625 PF06719 AraC-type transcriptional regulator N-terminus DM57_09640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_09640 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DM57_09645 PF00296 Luciferase-like monooxygenase DM57_09650 PF00512 His Kinase A (phospho-acceptor) domain DM57_09650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_09650 PF00672 HAMP domain DM57_09655 PF00072 Response regulator receiver domain DM57_09655 PF00486 Transcriptional regulatory protein, C terminal DM57_09670 PF01047 MarR family DM57_09675 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM57_09680 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM57_09685 PF00171 Aldehyde dehydrogenase family DM57_09690 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DM57_09700 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM57_09715 PF13609 Gram-negative porin DM57_09720 PF00005 ABC transporter DM57_09720 PF08402 TOBE domain DM57_09735 PF00072 Response regulator receiver domain DM57_09735 PF00486 Transcriptional regulatory protein, C terminal DM57_09740 PF00512 His Kinase A (phospho-acceptor) domain DM57_09740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_09740 PF08521 Two-component sensor kinase N-terminal DM57_09745 PF03473 MOSC domain DM57_09745 PF03476 MOSC N-terminal beta barrel domain DM57_09745 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_09750 PF13609 Gram-negative porin DM57_09765 PF00378 Enoyl-CoA hydratase/isomerase DM57_09770 PF01168 Alanine racemase, N-terminal domain DM57_09770 PF00842 Alanine racemase, C-terminal domain DM57_09780 PF12867 DinB superfamily DM57_09780 PF03781 Sulfatase-modifying factor enzyme 1 DM57_09785 PF10017 Histidine-specific methyltransferase, SAM-dependent DM57_09805 PF01527 Transposase DM57_09820 PF01220 Dehydroquinase class II DM57_09825 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DM57_09825 PF08501 Shikimate dehydrogenase substrate binding domain DM57_09830 PF07690 Major Facilitator Superfamily DM57_09835 PF00266 Aminotransferase class-V DM57_09845 PF00005 ABC transporter DM57_09845 PF08402 TOBE domain DM57_09850 PF00528 Binding-protein-dependent transport system inner membrane component DM57_09855 PF00528 Binding-protein-dependent transport system inner membrane component DM57_09860 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase DM57_09865 PF00171 Aldehyde dehydrogenase family DM57_09870 PF01966 HD domain DM57_09910 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DM57_09915 PF00248 Aldo/keto reductase family DM57_09930 PF00155 Aminotransferase class I and II DM57_09935 PF00271 Helicase conserved C-terminal domain DM57_09935 PF04851 Type III restriction enzyme, res subunit DM57_09935 PF17757 UvrB interaction domain DM57_09935 PF02151 UvrB/uvrC motif DM57_09935 PF12344 Ultra-violet resistance protein B DM57_09940 PF10634 Fe2+ transport protein DM57_09945 PF13473 Cupredoxin-like domain DM57_09950 PF03239 Iron permease FTR1 family DM57_09955 PF12801 4Fe-4S binding domain DM57_09955 PF04205 FMN-binding domain DM57_09960 PF03928 Haem-degrading DM57_09965 PF01527 Transposase DM57_09990 PF01527 Transposase DM57_1 PF00437 Type II/IV secretion system protein DM57_10005 PF00440 Bacterial regulatory proteins, tetR family DM57_10005 PF16925 Tetracyclin repressor-like, C-terminal domain DM57_1002 PF01527 Transposase DM57_10020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM57_10040 PF01594 AI-2E family transporter DM57_10050 PF00106 short chain dehydrogenase DM57_10055 PF00392 Bacterial regulatory proteins, gntR family DM57_10055 PF00155 Aminotransferase class I and II DM57_1006 PF02401 LytB protein DM57_1007 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DM57_10075 PF13545 Crp-like helix-turn-helix domain DM57_10075 PF00027 Cyclic nucleotide-binding domain DM57_1008 PF04002 RadC-like JAB domain DM57_10080 PF00501 AMP-binding enzyme DM57_10080 PF13193 AMP-binding enzyme C-terminal domain DM57_1009 PF00830 Ribosomal L28 family DM57_10095 PF02321 Outer membrane efflux protein DM57_1010 PF00471 Ribosomal protein L33 DM57_10100 PF03552 Cellulose synthase DM57_10100 PF00535 Glycosyl transferase family 2 DM57_10100 PF07238 PilZ domain DM57_1011 PF02910 Fumarate reductase flavoprotein C-term DM57_1011 PF00890 FAD binding domain DM57_1012 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DM57_1012 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DM57_1013 PF02445 Quinolinate synthetase A protein DM57_10140 PF03466 LysR substrate binding domain DM57_10140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_10145 PF00202 Aminotransferase class-III DM57_1015 PF00924 Mechanosensitive ion channel DM57_1015 PF12794 Mechanosensitive ion channel inner membrane domain 1 DM57_1015 PF12795 Mechanosensitive ion channel porin domain DM57_10150 PF00171 Aldehyde dehydrogenase family DM57_1016 PF01189 16S rRNA methyltransferase RsmB/F DM57_1016 PF01029 NusB family DM57_10160 PF01527 Transposase DM57_1017 PF00551 Formyl transferase DM57_1018 PF01687 Riboflavin kinase DM57_1018 PF06574 FAD synthetase DM57_10180 PF01546 Peptidase family M20/M25/M40 DM57_10180 PF07687 Peptidase dimerisation domain DM57_1019 PF08264 Anticodon-binding domain of tRNA DM57_1019 PF00133 tRNA synthetases class I (I, L, M and V) DM57_1019 PF06827 Zinc finger found in FPG and IleRS DM57_10190 PF03466 LysR substrate binding domain DM57_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1020 PF01252 Signal peptidase (SPase) II DM57_10200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_10200 PF03466 LysR substrate binding domain DM57_1021 PF04127 DNA / pantothenate metabolism flavoprotein DM57_1021 PF02441 Flavoprotein DM57_10215 PF17409 MoaF C-terminal domain DM57_10215 PF10703 MoaF N-terminal domain DM57_1022 PF00692 dUTPase DM57_10225 PF00196 Bacterial regulatory proteins, luxR family DM57_10230 PF00171 Aldehyde dehydrogenase family DM57_10235 PF00202 Aminotransferase class-III DM57_10240 PF13520 Amino acid permease DM57_1025 PF01527 Transposase DM57_10255 PF13609 Gram-negative porin DM57_10270 PF00583 Acetyltransferase (GNAT) family DM57_10275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM57_1028 PF03764 Elongation factor G, domain IV DM57_1028 PF00009 Elongation factor Tu GTP binding domain DM57_1028 PF03144 Elongation factor Tu domain 2 DM57_1028 PF14492 Elongation Factor G, domain II DM57_1028 PF00679 Elongation factor G C-terminus DM57_10290 PF13609 Gram-negative porin DM57_10305 PF00571 CBS domain DM57_10305 PF00478 IMP dehydrogenase / GMP reductase domain DM57_1031 PF00248 Aldo/keto reductase family DM57_10310 PF00925 GTP cyclohydrolase II DM57_1032 PF07702 UTRA domain DM57_1032 PF00392 Bacterial regulatory proteins, gntR family DM57_10320 PF00765 Autoinducer synthase DM57_10330 PF00196 Bacterial regulatory proteins, luxR family DM57_10330 PF03472 Autoinducer binding domain DM57_10335 PF02308 MgtC family DM57_10340 PF00149 Calcineurin-like phosphoesterase DM57_10345 PF00881 Nitroreductase family DM57_1035 PF07690 Major Facilitator Superfamily DM57_10355 PF09339 IclR helix-turn-helix domain DM57_10355 PF01614 Bacterial transcriptional regulator DM57_10360 PF00355 Rieske [2Fe-2S] domain DM57_10370 PF00355 Rieske [2Fe-2S] domain DM57_10385 PF12697 Alpha/beta hydrolase family DM57_10390 PF01614 Bacterial transcriptional regulator DM57_10390 PF09339 IclR helix-turn-helix domain DM57_10400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_10400 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_10400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_10405 PF03447 Homoserine dehydrogenase, NAD binding domain DM57_10405 PF01958 Domain of unknown function DUF108 DM57_10410 PF00171 Aldehyde dehydrogenase family DM57_10420 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_10420 PF14759 Reductase C-terminal DM57_10425 PF00083 Sugar (and other) transporter DM57_10430 PF05658 Head domain of trimeric autotransporter adhesin DM57_10430 PF13018 Extended Signal Peptide of Type V secretion system DM57_10430 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_10430 PF03895 YadA-like membrane anchor domain DM57_10435 PF00691 OmpA family DM57_10435 PF01389 OmpA-like transmembrane domain DM57_10450 PF01425 Amidase DM57_10455 PF01037 Lrp/AsnC ligand binding domain DM57_10460 PF01053 Cys/Met metabolism PLP-dependent enzyme DM57_1047 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DM57_1047 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DM57_1049 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DM57_10490 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_1050 PF03966 Trm112p-like protein DM57_10500 PF01527 Transposase DM57_1051 PF02348 Cytidylyltransferase DM57_10510 PF07947 YhhN family DM57_10515 PF09084 NMT1/THI5 like DM57_1052 PF05191 Adenylate kinase, active site lid DM57_10535 PF07690 Major Facilitator Superfamily DM57_1054 PF00313 'Cold-shock' DNA-binding domain DM57_10540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_10540 PF00672 HAMP domain DM57_10540 PF02203 Tar ligand binding domain homologue DM57_10545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_10545 PF02203 Tar ligand binding domain homologue DM57_10545 PF00672 HAMP domain DM57_1055 PF02617 ATP-dependent Clp protease adaptor protein ClpS DM57_1056 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_1056 PF02861 Clp amino terminal domain, pathogenicity island component DM57_1056 PF17871 AAA lid domain DM57_1056 PF00004 ATPase family associated with various cellular activities (AAA) DM57_1056 PF07724 AAA domain (Cdc48 subfamily) DM57_10570 PF02254 TrkA-N domain DM57_10570 PF07885 Ion channel DM57_10575 PF00561 alpha/beta hydrolase fold DM57_10585 PF02423 Ornithine cyclodeaminase/mu-crystallin family DM57_1059 PF01527 Transposase DM57_10590 PF00756 Putative esterase DM57_10600 PF13609 Gram-negative porin DM57_10610 PF01476 LysM domain DM57_10610 PF01551 Peptidase family M23 DM57_1062 PF00155 Aminotransferase class I and II DM57_10625 PF03466 LysR substrate binding domain DM57_10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1063 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DM57_10635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_10635 PF00005 ABC transporter DM57_1064 PF00550 Phosphopantetheine attachment site DM57_1064 PF00698 Acyl transferase domain DM57_1064 PF08240 Alcohol dehydrogenase GroES-like domain DM57_1064 PF16197 Ketoacyl-synthetase C-terminal extension DM57_1064 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_1064 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_1064 PF08659 KR domain DM57_1064 PF14765 Polyketide synthase dehydratase DM57_10640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_10640 PF00005 ABC transporter DM57_10645 PF00528 Binding-protein-dependent transport system inner membrane component DM57_10645 PF12911 N-terminal TM domain of oligopeptide transport permease C DM57_1065 PF00884 Sulfatase DM57_10650 PF00528 Binding-protein-dependent transport system inner membrane component DM57_10655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_10660 PF01427 D-ala-D-ala dipeptidase DM57_10685 PF04717 Type VI secretion system, phage-baseplate injector DM57_1069 PF00483 Nucleotidyl transferase DM57_10695 PF03527 RHS protein DM57_10695 PF05593 RHS Repeat DM57_1070 PF13580 SIS domain DM57_10705 PF03797 Autotransporter beta-domain DM57_10705 PF12951 Passenger-associated-transport-repeat DM57_10705 PF00082 Subtilase family DM57_1071 PF00288 GHMP kinases N terminal domain DM57_1071 PF08544 GHMP kinases C terminal DM57_1072 PF16363 GDP-mannose 4,6 dehydratase DM57_10720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_10725 PF00190 Cupin DM57_10730 PF01566 Natural resistance-associated macrophage protein DM57_10735 PF05360 yiaA/B two helix domain DM57_10740 PF01062 Bestrophin, RFP-TM, chloride channel DM57_10745 PF00384 Molybdopterin oxidoreductase DM57_10750 PF00392 Bacterial regulatory proteins, gntR family DM57_10750 PF00155 Aminotransferase class I and II DM57_10765 PF00690 Cation transporter/ATPase, N-terminus DM57_10765 PF00689 Cation transporting ATPase, C-terminus DM57_10770 PF00082 Subtilase family DM57_10770 PF04151 Bacterial pre-peptidase C-terminal domain DM57_10785 PF05199 GMC oxidoreductase DM57_10785 PF00732 GMC oxidoreductase DM57_10790 PF00034 Cytochrome c DM57_10790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DM57_10795 PF07681 DoxX DM57_1080 PF00005 ABC transporter DM57_10800 PF13609 Gram-negative porin DM57_10810 PF10997 Alternate to MurJ DM57_10815 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1082 PF01061 ABC-2 type transporter DM57_10820 PF00528 Binding-protein-dependent transport system inner membrane component DM57_10825 PF00005 ABC transporter DM57_10830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM57_1084 PF02563 Polysaccharide biosynthesis/export protein DM57_1086 PF05159 Capsule polysaccharide biosynthesis protein DM57_10865 PF07694 5TMR of 5TMR-LYT DM57_10865 PF06580 Histidine kinase DM57_1087 PF01050 Mannose-6-phosphate isomerase DM57_1087 PF00483 Nucleotidyl transferase DM57_10875 PF01527 Transposase DM57_10880 PF04397 LytTr DNA-binding domain DM57_10880 PF00072 Response regulator receiver domain DM57_10885 PF04397 LytTr DNA-binding domain DM57_10885 PF00072 Response regulator receiver domain DM57_1089 PF05552 Conserved TM helix DM57_1089 PF00924 Mechanosensitive ion channel DM57_10890 PF06628 Catalase-related immune-responsive DM57_10890 PF00199 Catalase DM57_10895 PF13847 Methyltransferase domain DM57_10895 PF10119 Predicted methyltransferase regulatory domain DM57_109 PF01144 Coenzyme A transferase DM57_1090 PF09335 SNARE associated Golgi protein DM57_10900 PF12833 Helix-turn-helix domain DM57_1091 PF08676 MutL C terminal dimerisation domain DM57_1091 PF01119 DNA mismatch repair protein, C-terminal domain DM57_10915 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_10915 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_10920 PF00550 Phosphopantetheine attachment site DM57_10925 PF00378 Enoyl-CoA hydratase/isomerase DM57_10930 PF00378 Enoyl-CoA hydratase/isomerase DM57_1094 PF00586 AIR synthase related protein, N-terminal domain DM57_1094 PF02769 AIR synthase related protein, C-terminal domain DM57_10940 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_10940 PF01610 Transposase DM57_10940 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_10945 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DM57_10945 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DM57_1095 PF00308 Bacterial dnaA protein DM57_10965 PF03060 Nitronate monooxygenase DM57_10965 PF00698 Acyl transferase domain DM57_1097 PF12626 Polymerase A arginine-rich C-terminus DM57_1097 PF12627 Probable RNA and SrmB- binding site of polymerase A DM57_1097 PF01743 Poly A polymerase head domain DM57_10970 PF02080 TrkA-C domain DM57_10970 PF02254 TrkA-N domain DM57_10970 PF00999 Sodium/hydrogen exchanger family DM57_10975 PF16197 Ketoacyl-synthetase C-terminal extension DM57_10975 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_10975 PF08659 KR domain DM57_10975 PF00550 Phosphopantetheine attachment site DM57_10975 PF14765 Polyketide synthase dehydratase DM57_10975 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_1098 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DM57_10980 PF16197 Ketoacyl-synthetase C-terminal extension DM57_10980 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_10980 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_10980 PF08659 KR domain DM57_10980 PF00550 Phosphopantetheine attachment site DM57_10980 PF16197 Ketoacyl-synthetase C-terminal extension DM57_10980 PF00550 Phosphopantetheine attachment site DM57_10980 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_10980 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_10980 PF14765 Polyketide synthase dehydratase DM57_10980 PF14765 Polyketide synthase dehydratase DM57_10980 PF08659 KR domain DM57_1099 PF01712 Deoxynucleoside kinase DM57_10990 PF00550 Phosphopantetheine attachment site DM57_10990 PF14765 Polyketide synthase dehydratase DM57_10990 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_10990 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_10990 PF16197 Ketoacyl-synthetase C-terminal extension DM57_10990 PF08659 KR domain DM57_10995 PF07690 Major Facilitator Superfamily DM57_11 PF00440 Bacterial regulatory proteins, tetR family DM57_11 PF08361 MAATS-type transcriptional repressor, C-terminal region DM57_110 PF01144 Coenzyme A transferase DM57_1100 PF02548 Ketopantoate hydroxymethyltransferase DM57_11000 PF00654 Voltage gated chloride channel DM57_1101 PF00425 chorismate binding enzyme DM57_1101 PF04715 Anthranilate synthase component I, N terminal region DM57_11015 PF03466 LysR substrate binding domain DM57_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1102 PF00226 DnaJ domain DM57_1102 PF01556 DnaJ C terminal domain DM57_1102 PF00684 DnaJ central domain DM57_11025 PF01699 Sodium/calcium exchanger protein DM57_1103 PF00012 Hsp70 protein DM57_11040 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM57_1105 PF01025 GrpE DM57_11055 PF04542 Sigma-70 region 2 DM57_11055 PF08281 Sigma-70, region 4 DM57_1106 PF01479 S4 domain DM57_11065 PF04264 YceI-like domain DM57_1107 PF00762 Ferrochelatase DM57_1108 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DM57_1108 PF01628 HrcA protein C terminal domain DM57_11080 PF04542 Sigma-70 region 2 DM57_11080 PF08281 Sigma-70, region 4 DM57_11085 PF04773 FecR protein DM57_11085 PF16220 Domain of unknown function (DUF4880) DM57_1109 PF01513 ATP-NAD kinase DM57_11090 PF07715 TonB-dependent Receptor Plug Domain DM57_11095 PF02653 Branched-chain amino acid transport system / permease component DM57_1110 PF02463 RecF/RecN/SMC N terminal domain DM57_11100 PF02653 Branched-chain amino acid transport system / permease component DM57_1111 PF08335 GlnD PII-uridylyltransferase DM57_1111 PF03710 Glutamate-ammonia ligase adenylyltransferase DM57_1112 PF13116 Protein of unknown function DM57_1112 PF13502 AsmA-like C-terminal region DM57_11120 PF01527 Transposase DM57_1113 PF00795 Carbon-nitrogen hydrolase DM57_11130 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_11130 PF00550 Phosphopantetheine attachment site DM57_11130 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_11130 PF14765 Polyketide synthase dehydratase DM57_11130 PF00975 Thioesterase domain DM57_11130 PF08242 Methyltransferase domain DM57_11130 PF16197 Ketoacyl-synthetase C-terminal extension DM57_11135 PF07690 Major Facilitator Superfamily DM57_1114 PF01523 Putative modulator of DNA gyrase DM57_11140 PF03621 MbtH-like protein DM57_11145 PF00501 AMP-binding enzyme DM57_11145 PF13193 AMP-binding enzyme C-terminal domain DM57_11145 PF00668 Condensation domain DM57_11145 PF00550 Phosphopantetheine attachment site DM57_11145 PF00975 Thioesterase domain DM57_1115 PF00793 DAHP synthetase I family DM57_1118 PF00572 Ribosomal protein L13 DM57_11180 PF00465 Iron-containing alcohol dehydrogenase DM57_11185 PF16884 N-terminal domain of oxidoreductase DM57_11185 PF00107 Zinc-binding dehydrogenase DM57_1119 PF00380 Ribosomal protein S9/S16 DM57_11195 PF02515 CoA-transferase family III DM57_1120 PF01521 Iron-sulphur cluster biosynthesis DM57_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_11205 PF03466 LysR substrate binding domain DM57_1121 PF12833 Helix-turn-helix domain DM57_1121 PF02311 AraC-like ligand binding domain DM57_1122 PF02798 Glutathione S-transferase, N-terminal domain DM57_11225 PF07690 Major Facilitator Superfamily DM57_11225 PF00083 Sugar (and other) transporter DM57_1123 PF02798 Glutathione S-transferase, N-terminal domain DM57_1123 PF00043 Glutathione S-transferase, C-terminal domain DM57_11230 PF01546 Peptidase family M20/M25/M40 DM57_11230 PF07687 Peptidase dimerisation domain DM57_11235 PF00850 Histone deacetylase domain DM57_1124 PF03702 Anhydro-N-acetylmuramic acid kinase DM57_11245 PF01227 GTP cyclohydrolase I DM57_1125 PF01479 S4 domain DM57_1125 PF00579 tRNA synthetases class I (W and Y) DM57_11250 PF00005 ABC transporter DM57_11255 PF08376 Nitrate and nitrite sensing DM57_11255 PF03861 ANTAR domain DM57_1126 PF02580 D-Tyr-tRNA(Tyr) deacylase DM57_11260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_1127 PF00300 Histidine phosphatase superfamily (branch 1) DM57_11270 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_11270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DM57_11270 PF18267 Rubredoxin NAD+ reductase C-terminal domain DM57_11270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DM57_11270 PF04324 BFD-like [2Fe-2S] binding domain DM57_11275 PF13806 Rieske-like [2Fe-2S] domain DM57_11280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM57_11280 PF00384 Molybdopterin oxidoreductase DM57_11280 PF01568 Molydopterin dinucleotide binding domain DM57_11290 PF00905 Penicillin binding protein transpeptidase domain DM57_11290 PF03717 Penicillin-binding Protein dimerisation domain DM57_11295 PF07943 Penicillin-binding protein 5, C-terminal domain DM57_11295 PF00768 D-alanyl-D-alanine carboxypeptidase DM57_1130 PF17864 RuvB AAA lid domain DM57_1130 PF05491 RuvB C-terminal winged helix domain DM57_1130 PF05496 Holliday junction DNA helicase RuvB P-loop domain DM57_11305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DM57_11305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DM57_1131 PF07499 RuvA, C-terminal domain DM57_1131 PF01330 RuvA N terminal domain DM57_11315 PF00005 ABC transporter DM57_11315 PF08402 TOBE domain DM57_1132 PF02075 Crossover junction endodeoxyribonuclease RuvC DM57_11320 PF00107 Zinc-binding dehydrogenase DM57_11320 PF08240 Alcohol dehydrogenase GroES-like domain DM57_11325 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1133 PF01808 AICARFT/IMPCHase bienzyme DM57_1133 PF02142 MGS-like domain DM57_11330 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1134 PF02954 Bacterial regulatory protein, Fis family DM57_11345 PF07690 Major Facilitator Superfamily DM57_1135 PF01207 Dihydrouridine synthase (Dus) DM57_11350 PF00455 DeoR C terminal sensor domain DM57_11350 PF08220 DeoR-like helix-turn-helix domain DM57_1136 PF01494 FAD binding domain DM57_1137 PF05195 Aminopeptidase P, N-terminal domain DM57_1137 PF00557 Metallopeptidase family M24 DM57_1138 PF00043 Glutathione S-transferase, C-terminal domain DM57_1138 PF13417 Glutathione S-transferase, N-terminal domain DM57_11390 PF00999 Sodium/hydrogen exchanger family DM57_11390 PF02254 TrkA-N domain DM57_114 PF03466 LysR substrate binding domain DM57_114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1140 PF01645 Conserved region in glutamate synthase DM57_11400 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM57_11405 PF03717 Penicillin-binding Protein dimerisation domain DM57_11405 PF00905 Penicillin binding protein transpeptidase domain DM57_11410 PF01527 Transposase DM57_1142 PF00293 NUDIX domain DM57_1143 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DM57_1143 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DM57_11435 PF00589 Phage integrase family DM57_11435 PF02899 Phage integrase, N-terminal SAM-like domain DM57_1144 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DM57_1145 PF02233 NAD(P) transhydrogenase beta subunit DM57_11450 PF00925 GTP cyclohydrolase II DM57_11455 PF02321 Outer membrane efflux protein DM57_11460 PF00873 AcrB/AcrD/AcrF family DM57_11465 PF13533 Biotin-lipoyl like DM57_11475 PF07969 Amidohydrolase family DM57_1148 PF02926 THUMP domain DM57_1148 PF01170 Putative RNA methylase family UPF0020 DM57_11485 PF17862 AAA+ lid domain DM57_11485 PF01434 Peptidase family M41 DM57_11485 PF00004 ATPase family associated with various cellular activities (AAA) DM57_11500 PF13520 Amino acid permease DM57_1152 PF02470 MlaD protein DM57_11525 PF02321 Outer membrane efflux protein DM57_1153 PF04403 Paraquat-inducible protein A DM57_11530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_11530 PF00529 HlyD membrane-fusion protein of T1SS DM57_11535 PF00873 AcrB/AcrD/AcrF family DM57_11540 PF00486 Transcriptional regulatory protein, C terminal DM57_11540 PF00072 Response regulator receiver domain DM57_11545 PF00672 HAMP domain DM57_11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_11545 PF00512 His Kinase A (phospho-acceptor) domain DM57_11555 PF01527 Transposase DM57_1156 PF04264 YceI-like domain DM57_1157 PF04264 YceI-like domain DM57_11570 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_11570 PF05658 Head domain of trimeric autotransporter adhesin DM57_11570 PF13018 Extended Signal Peptide of Type V secretion system DM57_11570 PF03895 YadA-like membrane anchor domain DM57_1159 PF07549 SecD/SecF GG Motif DM57_1159 PF02355 Protein export membrane protein DM57_116 PF12146 Serine aminopeptidase, S33 DM57_1160 PF07549 SecD/SecF GG Motif DM57_1160 PF13721 SecD export protein N-terminal TM region DM57_1160 PF02355 Protein export membrane protein DM57_1161 PF02699 Preprotein translocase subunit DM57_11610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM57_11610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM57_11610 PF00378 Enoyl-CoA hydratase/isomerase DM57_11615 PF01039 Carboxyl transferase domain DM57_1162 PF01702 Queuine tRNA-ribosyltransferase DM57_11620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_11620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_11620 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_1163 PF02547 Queuosine biosynthesis protein DM57_11635 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM57_1164 PF00271 Helicase conserved C-terminal domain DM57_1164 PF00270 DEAD/DEAH box helicase DM57_1164 PF17191 RecG wedge domain DM57_11640 PF07732 Multicopper oxidase DM57_11645 PF00355 Rieske [2Fe-2S] domain DM57_11645 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DM57_1165 PF03466 LysR substrate binding domain DM57_1165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1167 PF00141 Peroxidase DM57_11675 PF00083 Sugar (and other) transporter DM57_11685 PF00512 His Kinase A (phospho-acceptor) domain DM57_11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_11690 PF00072 Response regulator receiver domain DM57_11690 PF00486 Transcriptional regulatory protein, C terminal DM57_117 PF01042 Endoribonuclease L-PSP DM57_1170 PF01638 HxlR-like helix-turn-helix DM57_1171 PF01040 UbiA prenyltransferase family DM57_11710 PF02424 ApbE family DM57_11715 PF00171 Aldehyde dehydrogenase family DM57_11720 PF00155 Aminotransferase class I and II DM57_1173 PF06299 Protein of unknown function (DUF1045) DM57_11730 PF03466 LysR substrate binding domain DM57_11730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_11735 PF01266 FAD dependent oxidoreductase DM57_1174 PF07702 UTRA domain DM57_1174 PF00392 Bacterial regulatory proteins, gntR family DM57_11740 PF00440 Bacterial regulatory proteins, tetR family DM57_1175 PF06754 Phosphonate metabolism protein PhnG DM57_11750 PF00455 DeoR C terminal sensor domain DM57_11750 PF08220 DeoR-like helix-turn-helix domain DM57_11755 PF07690 Major Facilitator Superfamily DM57_11760 PF08125 Mannitol dehydrogenase C-terminal domain DM57_11760 PF01232 Mannitol dehydrogenase Rossmann domain DM57_1177 PF05861 Bacterial phosphonate metabolism protein (PhnI) DM57_11770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DM57_11770 PF13378 Enolase C-terminal domain-like DM57_11775 PF08240 Alcohol dehydrogenase GroES-like domain DM57_11775 PF00107 Zinc-binding dehydrogenase DM57_1178 PF06007 Phosphonate metabolism protein PhnJ DM57_1179 PF00005 ABC transporter DM57_11790 PF02540 NAD synthase DM57_118 PF02824 TGS domain DM57_118 PF04607 Region found in RelA / SpoT proteins DM57_118 PF13291 ACT domain DM57_1180 PF00005 ABC transporter DM57_11805 PF09370 Phosphoenolpyruvate hydrolase-like DM57_1181 PF07969 Amidohydrolase family DM57_11815 PF07732 Multicopper oxidase DM57_1182 PF00005 ABC transporter DM57_11830 PF01510 N-acetylmuramoyl-L-alanine amidase DM57_11835 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DM57_11845 PF13018 Extended Signal Peptide of Type V secretion system DM57_11845 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_11845 PF03895 YadA-like membrane anchor domain DM57_11845 PF05658 Head domain of trimeric autotransporter adhesin DM57_1185 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1186 PF14748 Pyrroline-5-carboxylate reductase dimerisation DM57_1186 PF03807 NADP oxidoreductase coenzyme F420-dependent DM57_11860 PF00486 Transcriptional regulatory protein, C terminal DM57_11860 PF00072 Response regulator receiver domain DM57_11865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_11865 PF00512 His Kinase A (phospho-acceptor) domain DM57_1187 PF01168 Alanine racemase, N-terminal domain DM57_1188 PF02754 Cysteine-rich domain DM57_1188 PF13183 4Fe-4S dicluster domain DM57_1189 PF01565 FAD binding domain DM57_1190 PF02913 FAD linked oxidases, C-terminal domain DM57_1190 PF01565 FAD binding domain DM57_11900 PF17871 AAA lid domain DM57_11900 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_11900 PF00004 ATPase family associated with various cellular activities (AAA) DM57_11900 PF07724 AAA domain (Cdc48 subfamily) DM57_1191 PF02913 FAD linked oxidases, C-terminal domain DM57_1191 PF01565 FAD binding domain DM57_1192 PF01923 Cobalamin adenosyltransferase DM57_1193 PF00042 Globin DM57_1193 PF00175 Oxidoreductase NAD-binding domain DM57_1193 PF00970 Oxidoreductase FAD-binding domain DM57_11960 PF01227 GTP cyclohydrolase I DM57_11965 PF01527 Transposase DM57_1198 PF01979 Amidohydrolase family DM57_1199 PF13230 Glutamine amidotransferases class-II DM57_11990 PF00816 H-NS histone family DM57_12 PF00529 HlyD membrane-fusion protein of T1SS DM57_12 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_120 PF03129 Anticodon binding domain DM57_120 PF02824 TGS domain DM57_120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DM57_120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM57_12000 PF00324 Amino acid permease DM57_1201 PF00011 Hsp20/alpha crystallin family DM57_12015 PF00106 short chain dehydrogenase DM57_1202 PF00011 Hsp20/alpha crystallin family DM57_1203 PF00166 Chaperonin 10 Kd subunit DM57_12030 PF13823 Alcohol dehydrogenase GroES-associated DM57_12030 PF08240 Alcohol dehydrogenase GroES-like domain DM57_12030 PF00107 Zinc-binding dehydrogenase DM57_12040 PF00582 Universal stress protein family DM57_12055 PF00072 Response regulator receiver domain DM57_12055 PF00196 Bacterial regulatory proteins, luxR family DM57_1206 PF00005 ABC transporter DM57_1207 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1208 PF00528 Binding-protein-dependent transport system inner membrane component DM57_12085 PF01494 FAD binding domain DM57_1209 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_121 PF05198 Translation initiation factor IF-3, N-terminal domain DM57_121 PF00707 Translation initiation factor IF-3, C-terminal domain DM57_12100 PF08453 Peptidase family M9 N-terminal DM57_12100 PF01752 Collagenase DM57_12110 PF00398 Ribosomal RNA adenine dimethylase DM57_12115 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DM57_1212 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DM57_1212 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DM57_1213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1213 PF03466 LysR substrate binding domain DM57_12130 PF17284 Spermidine synthase tetramerisation domain DM57_1214 PF07690 Major Facilitator Superfamily DM57_1215 PF00206 Lyase DM57_1215 PF08328 Adenylosuccinate lyase C-terminal DM57_12160 PF01835 MG2 domain DM57_12160 PF00207 Alpha-2-macroglobulin family DM57_12160 PF07703 Alpha-2-macroglobulin bait region domain DM57_12160 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DM57_12165 PF00905 Penicillin binding protein transpeptidase domain DM57_12165 PF00912 Transglycosylase DM57_1217 PF02447 GntP family permease DM57_12175 PF00072 Response regulator receiver domain DM57_12175 PF01339 CheB methylesterase DM57_1218 PF01081 KDPG and KHG aldolase DM57_12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_12180 PF00512 His Kinase A (phospho-acceptor) domain DM57_12180 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_1219 PF00920 Dehydratase family DM57_122 PF01632 Ribosomal protein L35 DM57_1220 PF01418 Helix-turn-helix domain, rpiR family DM57_1220 PF01380 SIS domain DM57_12215 PF00155 Aminotransferase class I and II DM57_1222 PF00171 Aldehyde dehydrogenase family DM57_12220 PF00324 Amino acid permease DM57_12225 PF01037 Lrp/AsnC ligand binding domain DM57_1223 PF06144 DNA polymerase III, delta subunit DM57_1223 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DM57_12230 PF00990 Diguanylate cyclase, GGDEF domain DM57_12230 PF03707 Bacterial signalling protein N terminal repeat DM57_12230 PF00563 EAL domain DM57_12245 PF03006 Haemolysin-III related DM57_1225 PF13603 Leucyl-tRNA synthetase, Domain 2 DM57_1225 PF00133 tRNA synthetases class I (I, L, M and V) DM57_1225 PF09334 tRNA synthetases class I (M) DM57_1225 PF08264 Anticodon-binding domain of tRNA DM57_12250 PF13458 Periplasmic binding protein DM57_1226 PF02472 Biopolymer transport protein ExbD/TolR DM57_1227 PF01618 MotA/TolQ/ExbB proton channel family DM57_12275 PF01614 Bacterial transcriptional regulator DM57_12275 PF09339 IclR helix-turn-helix domain DM57_1228 PF01113 Dihydrodipicolinate reductase, N-terminus DM57_1228 PF05173 Dihydrodipicolinate reductase, C-terminus DM57_12280 PF00816 H-NS histone family DM57_12285 PF03895 YadA-like membrane anchor domain DM57_12285 PF13018 Extended Signal Peptide of Type V secretion system DM57_12285 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_12285 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_12285 PF03895 YadA-like membrane anchor domain DM57_12285 PF05658 Head domain of trimeric autotransporter adhesin DM57_12285 PF05658 Head domain of trimeric autotransporter adhesin DM57_12285 PF13018 Extended Signal Peptide of Type V secretion system DM57_1229 PF04355 SmpA / OmlA family DM57_123 PF00453 Ribosomal protein L20 DM57_1230 PF01475 Ferric uptake regulator family DM57_12310 PF01527 Transposase DM57_1233 PF03561 Allantoicase repeat DM57_12330 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM57_1234 PF00375 Sodium:dicarboxylate symporter family DM57_12345 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DM57_12345 PF08666 SAF domain DM57_1235 PF00392 Bacterial regulatory proteins, gntR family DM57_1235 PF07729 FCD domain DM57_12355 PF02653 Branched-chain amino acid transport system / permease component DM57_1236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1236 PF03466 LysR substrate binding domain DM57_12360 PF00005 ABC transporter DM57_1237 PF00484 Carbonic anhydrase DM57_12375 PF07519 Tannase and feruloyl esterase DM57_1238 PF02560 Cyanate lyase C-terminal domain DM57_12380 PF13609 Gram-negative porin DM57_12385 PF07690 Major Facilitator Superfamily DM57_1239 PF07690 Major Facilitator Superfamily DM57_12395 PF00171 Aldehyde dehydrogenase family DM57_124 PF01409 tRNA synthetases class II core domain (F) DM57_124 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DM57_1240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DM57_1240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DM57_12400 PF00378 Enoyl-CoA hydratase/isomerase DM57_1241 PF00456 Transketolase, thiamine diphosphate binding domain DM57_1241 PF02780 Transketolase, C-terminal domain DM57_1241 PF02779 Transketolase, pyrimidine binding domain DM57_1242 PF17284 Spermidine synthase tetramerisation domain DM57_12425 PF08450 SMP-30/Gluconolactonase/LRE-like region DM57_1244 PF04452 RNA methyltransferase DM57_12440 PF01047 MarR family DM57_12460 PF00072 Response regulator receiver domain DM57_12460 PF00196 Bacterial regulatory proteins, luxR family DM57_1247 PF00390 Malic enzyme, N-terminal domain DM57_1247 PF03949 Malic enzyme, NAD binding domain DM57_1247 PF01515 Phosphate acetyl/butaryl transferase DM57_12475 PF04185 Phosphoesterase family DM57_12475 PF05506 Domain of unknown function (DUF756) DM57_1248 PF02769 AIR synthase related protein, C-terminal domain DM57_1248 PF00586 AIR synthase related protein, N-terminal domain DM57_12480 PF03150 Di-haem cytochrome c peroxidase DM57_12480 PF14376 Haem-binding domain DM57_12480 PF00034 Cytochrome c DM57_1249 PF04608 Phosphatidylglycerophosphatase A DM57_12490 PF00654 Voltage gated chloride channel DM57_125 PF03483 B3/4 domain DM57_125 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DM57_125 PF03147 Ferredoxin-fold anticodon binding domain DM57_125 PF01588 Putative tRNA binding domain DM57_125 PF03484 tRNA synthetase B5 domain DM57_1250 PF02464 Competence-damaged protein DM57_12500 PF00106 short chain dehydrogenase DM57_12505 PF05853 beta-keto acid cleavage enzyme DM57_1251 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DM57_12515 PF07690 Major Facilitator Superfamily DM57_12520 PF07969 Amidohydrolase family DM57_12525 PF13556 PucR C-terminal helix-turn-helix domain DM57_12525 PF17853 GGDEF-like domain DM57_12530 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DM57_1254 PF02653 Branched-chain amino acid transport system / permease component DM57_12540 PF13609 Gram-negative porin DM57_1255 PF00005 ABC transporter DM57_12555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_12555 PF03466 LysR substrate binding domain DM57_1256 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM57_12560 PF04632 Fusaric acid resistance protein family DM57_12575 PF03576 Peptidase family S58 DM57_1259 PF05035 2-keto-3-deoxy-galactonokinase DM57_12595 PF13609 Gram-negative porin DM57_126 PF00216 Bacterial DNA-binding protein DM57_1260 PF09339 IclR helix-turn-helix domain DM57_1260 PF01614 Bacterial transcriptional regulator DM57_12610 PF01527 Transposase DM57_1263 PF00912 Transglycosylase DM57_12630 PF07729 FCD domain DM57_12630 PF00392 Bacterial regulatory proteins, gntR family DM57_12635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM57_12635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DM57_12640 PF07005 Sugar-binding N-terminal domain DM57_12640 PF17042 Nucleotide-binding C-terminal domain DM57_12645 PF00596 Class II Aldolase and Adducin N-terminal domain DM57_1265 PF00773 RNB domain DM57_12650 PF07690 Major Facilitator Superfamily DM57_12655 PF01261 Xylose isomerase-like TIM barrel DM57_1266 PF05728 Uncharacterised protein family (UPF0227) DM57_12660 PF01370 NAD dependent epimerase/dehydratase family DM57_1267 PF01225 Mur ligase family, catalytic domain DM57_1267 PF08245 Mur ligase middle domain DM57_1267 PF02875 Mur ligase family, glutamate ligase domain DM57_12680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM57_12685 PF01965 DJ-1/PfpI family DM57_12685 PF12833 Helix-turn-helix domain DM57_1269 PF00578 AhpC/TSA family DM57_12690 PF00528 Binding-protein-dependent transport system inner membrane component DM57_12695 PF00571 CBS domain DM57_12695 PF00005 ABC transporter DM57_1270 PF01220 Dehydroquinase class II DM57_12700 PF03358 NADPH-dependent FMN reductase DM57_1271 PF00364 Biotin-requiring enzyme DM57_12715 PF01022 Bacterial regulatory protein, arsR family DM57_1272 PF00289 Biotin carboxylase, N-terminal domain DM57_1272 PF02785 Biotin carboxylase C-terminal domain DM57_1272 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM57_12730 PF01758 Sodium Bile acid symporter family DM57_1275 PF08534 Redoxin DM57_1276 PF00294 pfkB family carbohydrate kinase DM57_12795 PF00378 Enoyl-CoA hydratase/isomerase DM57_1280 PF00268 Ribonucleotide reductase, small chain DM57_12805 PF02803 Thiolase, C-terminal domain DM57_12805 PF00108 Thiolase, N-terminal domain DM57_1281 PF00317 Ribonucleotide reductase, all-alpha domain DM57_1281 PF02867 Ribonucleotide reductase, barrel domain DM57_1281 PF03477 ATP cone domain DM57_12810 PF00378 Enoyl-CoA hydratase/isomerase DM57_1282 PF01510 N-acetylmuramoyl-L-alanine amidase DM57_12825 PF03562 MltA specific insert domain DM57_12825 PF06725 3D domain DM57_12835 PF04379 ApaG domain DM57_1284 PF01578 Cytochrome C assembly protein DM57_12845 PF13419 Haloacid dehalogenase-like hydrolase DM57_1285 PF02881 SRP54-type protein, helical bundle domain DM57_1285 PF00448 SRP54-type protein, GTPase domain DM57_1285 PF02978 Signal peptide binding domain DM57_12850 PF04715 Anthranilate synthase component I, N terminal region DM57_12850 PF00425 chorismate binding enzyme DM57_12855 PF00117 Glutamine amidotransferase class-I DM57_12860 PF02885 Glycosyl transferase family, helical bundle domain DM57_12860 PF00591 Glycosyl transferase family, a/b domain DM57_12865 PF00218 Indole-3-glycerol phosphate synthase DM57_1287 PF01914 MarC family integral membrane protein DM57_12875 PF03167 Uracil DNA glycosylase superfamily DM57_1288 PF03129 Anticodon binding domain DM57_1288 PF04073 Aminoacyl-tRNA editing domain DM57_1288 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DM57_12880 PF02525 Flavodoxin-like fold DM57_1289 PF00293 NUDIX domain DM57_12890 PF13098 Thioredoxin-like domain DM57_12890 PF10411 Disulfide bond isomerase protein N-terminus DM57_12895 PF01494 FAD binding domain DM57_1291 PF01472 PUA domain DM57_1291 PF00696 Amino acid kinase family DM57_12910 PF01926 50S ribosome-binding GTPase DM57_12910 PF06071 Protein of unknown function (DUF933) DM57_1292 PF01018 GTP1/OBG DM57_1292 PF01926 50S ribosome-binding GTPase DM57_12920 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DM57_1293 PF01016 Ribosomal L27 protein DM57_12930 PF00324 Amino acid permease DM57_1294 PF00829 Ribosomal prokaryotic L21 protein DM57_12940 PF03009 Glycerophosphoryl diester phosphodiesterase family DM57_1295 PF00348 Polyprenyl synthetase DM57_12955 PF00005 ABC transporter DM57_12955 PF12848 ABC transporter DM57_12965 PF00857 Isochorismatase family DM57_12975 PF01321 Creatinase/Prolidase N-terminal domain DM57_12975 PF00557 Metallopeptidase family M24 DM57_12995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DM57_12995 PF01488 Shikimate / quinate 5-dehydrogenase DM57_12995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DM57_13 PF00873 AcrB/AcrD/AcrF family DM57_13000 PF00472 RF-1 domain DM57_13000 PF03462 PCRF domain DM57_13005 PF17827 PrmC N-terminal domain DM57_13005 PF05175 Methyltransferase small domain DM57_13010 PF00462 Glutaredoxin DM57_13015 PF02441 Flavoprotein DM57_13020 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DM57_13025 PF13520 Amino acid permease DM57_1303 PF00571 CBS domain DM57_1303 PF03471 Transporter associated domain DM57_1303 PF01595 Cyclin M transmembrane N-terminal domain DM57_13035 PF01527 Transposase DM57_1304 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DM57_1304 PF00437 Type II/IV secretion system protein DM57_13045 PF07859 alpha/beta hydrolase fold DM57_1305 PF00482 Type II secretion system (T2SS), protein F DM57_13055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM57_13055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM57_1306 PF01478 Type IV leader peptidase family DM57_1306 PF06750 Bacterial Peptidase A24 N-terminal domain DM57_13060 PF05853 beta-keto acid cleavage enzyme DM57_13065 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM57_1307 PF01121 Dephospho-CoA kinase DM57_13070 PF12833 Helix-turn-helix domain DM57_13070 PF01965 DJ-1/PfpI family DM57_13075 PF02868 Thermolysin metallopeptidase, alpha-helical domain DM57_13075 PF03413 Peptidase propeptide and YPEB domain DM57_13075 PF07504 Fungalysin/Thermolysin Propeptide Motif DM57_13075 PF01447 Thermolysin metallopeptidase, catalytic domain DM57_1308 PF07072 Cell division protein DM57_13080 PF04151 Bacterial pre-peptidase C-terminal domain DM57_13080 PF04389 Peptidase family M28 DM57_13085 PF00267 Gram-negative porin DM57_1309 PF00293 NUDIX domain DM57_13095 PF12411 Choline sulfatase enzyme C terminal DM57_13095 PF00884 Sulfatase DM57_13100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_13100 PF03466 LysR substrate binding domain DM57_13105 PF00551 Formyl transferase DM57_1311 PF01960 ArgJ family DM57_13115 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM57_1312 PF07517 SecA DEAD-like domain DM57_1312 PF01043 SecA preprotein cross-linking domain DM57_1312 PF07516 SecA Wing and Scaffold domain DM57_1312 PF02810 SEC-C motif DM57_13120 PF00970 Oxidoreductase FAD-binding domain DM57_13120 PF00175 Oxidoreductase NAD-binding domain DM57_13120 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_13125 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DM57_13125 PF00355 Rieske [2Fe-2S] domain DM57_13135 PF01012 Electron transfer flavoprotein domain DM57_13135 PF00766 Electron transfer flavoprotein FAD-binding domain DM57_1314 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DM57_13140 PF02754 Cysteine-rich domain DM57_13140 PF13183 4Fe-4S dicluster domain DM57_13145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM57_1315 PF08534 Redoxin DM57_13155 PF01244 Membrane dipeptidase (Peptidase family M19) DM57_1316 PF12327 FtsZ family, C-terminal domain DM57_1316 PF00091 Tubulin/FtsZ family, GTPase domain DM57_13160 PF00464 Serine hydroxymethyltransferase DM57_13165 PF12833 Helix-turn-helix domain DM57_13165 PF01965 DJ-1/PfpI family DM57_1317 PF02491 SHS2 domain inserted in FTSA DM57_13170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DM57_13170 PF08240 Alcohol dehydrogenase GroES-like domain DM57_13175 PF02435 Levansucrase/Invertase DM57_1318 PF08478 POTRA domain, FtsQ-type DM57_1318 PF03799 Cell division protein FtsQ DM57_13180 PF08244 Glycosyl hydrolases family 32 C terminal DM57_13180 PF00251 Glycosyl hydrolases family 32 N-terminal domain DM57_13185 PF00529 HlyD membrane-fusion protein of T1SS DM57_13185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_1319 PF01820 D-ala D-ala ligase N-terminus DM57_1319 PF07478 D-ala D-ala ligase C-terminus DM57_1320 PF08245 Mur ligase middle domain DM57_1320 PF01225 Mur ligase family, catalytic domain DM57_1320 PF02875 Mur ligase family, glutamate ligase domain DM57_13200 PF00535 Glycosyl transferase family 2 DM57_13205 PF07690 Major Facilitator Superfamily DM57_1321 PF04101 Glycosyltransferase family 28 C-terminal domain DM57_1321 PF03033 Glycosyltransferase family 28 N-terminal domain DM57_13210 PF03033 Glycosyltransferase family 28 N-terminal domain DM57_13215 PF00561 alpha/beta hydrolase fold DM57_1322 PF01098 Cell cycle protein DM57_1323 PF02875 Mur ligase family, glutamate ligase domain DM57_1323 PF08245 Mur ligase middle domain DM57_1324 PF00953 Glycosyl transferase family 4 DM57_1324 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DM57_1325 PF01225 Mur ligase family, catalytic domain DM57_1325 PF02875 Mur ligase family, glutamate ligase domain DM57_1325 PF08245 Mur ligase middle domain DM57_1326 PF02875 Mur ligase family, glutamate ligase domain DM57_1326 PF08245 Mur ligase middle domain DM57_1327 PF03717 Penicillin-binding Protein dimerisation domain DM57_1327 PF00905 Penicillin binding protein transpeptidase domain DM57_1328 PF04999 Cell division protein FtsL DM57_13280 PF04717 Type VI secretion system, phage-baseplate injector DM57_13285 PF04717 Type VI secretion system, phage-baseplate injector DM57_1329 PF01795 MraW methylase family DM57_13290 PF17871 AAA lid domain DM57_13290 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_13290 PF00004 ATPase family associated with various cellular activities (AAA) DM57_13290 PF07724 AAA domain (Cdc48 subfamily) DM57_1330 PF02381 MraZ protein, putative antitoxin-like DM57_1331 PF03232 Ubiquinone biosynthesis protein COQ7 DM57_1332 PF13609 Gram-negative porin DM57_13325 PF01527 Transposase DM57_13335 PF09286 Pro-kumamolisin, activation domain DM57_13335 PF00082 Subtilase family DM57_13345 PF00528 Binding-protein-dependent transport system inner membrane component DM57_13355 PF08402 TOBE domain DM57_13355 PF00005 ABC transporter DM57_13360 PF00155 Aminotransferase class I and II DM57_13360 PF00392 Bacterial regulatory proteins, gntR family DM57_13365 PF03280 Proteobacterial lipase chaperone protein DM57_13370 PF00561 alpha/beta hydrolase fold DM57_13375 PF07715 TonB-dependent Receptor Plug Domain DM57_13375 PF00593 TonB dependent receptor DM57_13385 PF01292 Prokaryotic cytochrome b561 DM57_13395 PF01551 Peptidase family M23 DM57_13395 PF01476 LysM domain DM57_13410 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DM57_13410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DM57_13420 PF02146 Sir2 family DM57_13425 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DM57_1344 PF05138 Phenylacetic acid catabolic protein DM57_1345 PF06243 Phenylacetic acid degradation B DM57_1346 PF05138 Phenylacetic acid catabolic protein DM57_13460 PF16671 Actin cross-linking domain DM57_13460 PF04717 Type VI secretion system, phage-baseplate injector DM57_13465 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_13465 PF07724 AAA domain (Cdc48 subfamily) DM57_13465 PF17871 AAA lid domain DM57_13465 PF00004 ATPase family associated with various cellular activities (AAA) DM57_1347 PF01883 Iron-sulfur cluster assembly protein DM57_1348 PF00175 Oxidoreductase NAD-binding domain DM57_1348 PF00970 Oxidoreductase FAD-binding domain DM57_1348 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_13485 PF05638 Type VI secretion system effector, Hcp DM57_1350 PF17932 Tetracyclin repressor-like, C-terminal domain DM57_1350 PF00440 Bacterial regulatory proteins, tetR family DM57_1352 PF01037 Lrp/AsnC ligand binding domain DM57_1352 PF13404 AsnC-type helix-turn-helix domain DM57_13520 PF13677 Membrane MotB of proton-channel complex MotA/MotB DM57_13520 PF00691 OmpA family DM57_1353 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DM57_13550 PF04345 Chorismate lyase DM57_13555 PF04345 Chorismate lyase DM57_1356 PF03949 Malic enzyme, NAD binding domain DM57_1356 PF00390 Malic enzyme, N-terminal domain DM57_1356 PF01515 Phosphate acetyl/butaryl transferase DM57_1357 PF00156 Phosphoribosyl transferase domain DM57_13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_13570 PF03466 LysR substrate binding domain DM57_1358 PF01161 Phosphatidylethanolamine-binding protein DM57_13580 PF03466 LysR substrate binding domain DM57_13580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1359 PF03358 NADPH-dependent FMN reductase DM57_13590 PF00581 Rhodanese-like domain DM57_13595 PF00753 Metallo-beta-lactamase superfamily DM57_136 PF06804 NlpB/DapX lipoprotein DM57_1360 PF01118 Semialdehyde dehydrogenase, NAD binding domain DM57_13600 PF07690 Major Facilitator Superfamily DM57_13605 PF00266 Aminotransferase class-V DM57_13620 PF07690 Major Facilitator Superfamily DM57_13620 PF00083 Sugar (and other) transporter DM57_13625 PF03466 LysR substrate binding domain DM57_13625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1363 PF03922 OmpW family DM57_13630 PF01070 FMN-dependent dehydrogenase DM57_13635 PF01557 Fumarylacetoacetate (FAA) hydrolase family DM57_13645 PF01425 Amidase DM57_13655 PF00583 Acetyltransferase (GNAT) family DM57_13655 PF13380 CoA binding domain DM57_13655 PF13607 Succinyl-CoA ligase like flavodoxin domain DM57_1366 PF01527 Transposase DM57_13660 PF00816 H-NS histone family DM57_1367 PF01578 Cytochrome C assembly protein DM57_1368 PF05140 ResB-like family DM57_13680 PF13185 GAF domain DM57_13680 PF02954 Bacterial regulatory protein, Fis family DM57_13680 PF00158 Sigma-54 interaction domain DM57_1369 PF00034 Cytochrome c DM57_137 PF01527 Transposase DM57_1370 PF01926 50S ribosome-binding GTPase DM57_13700 PF03573 outer membrane porin, OprD family DM57_13705 PF00005 ABC transporter DM57_13705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_1371 PF00490 Delta-aminolevulinic acid dehydratase DM57_13710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_13710 PF00005 ABC transporter DM57_13715 PF00528 Binding-protein-dependent transport system inner membrane component DM57_13715 PF12911 N-terminal TM domain of oligopeptide transport permease C DM57_1372 PF11412 Disulphide bond corrector protein DsbC DM57_1372 PF02683 Cytochrome C biogenesis protein transmembrane region DM57_13720 PF00528 Binding-protein-dependent transport system inner membrane component DM57_13725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_13730 PF07883 Cupin domain DM57_13730 PF01381 Helix-turn-helix DM57_13735 PF00854 POT family DM57_1374 PF01196 Ribosomal protein L17 DM57_1375 PF01000 RNA polymerase Rpb3/RpoA insert domain DM57_1375 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DM57_1375 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DM57_13750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_13750 PF03466 LysR substrate binding domain DM57_1376 PF01479 S4 domain DM57_1376 PF00163 Ribosomal protein S4/S9 N-terminal domain DM57_1377 PF00411 Ribosomal protein S11 DM57_13775 PF04542 Sigma-70 region 2 DM57_13775 PF04539 Sigma-70 region 3 DM57_13775 PF00140 Sigma-70 factor, region 1.2 DM57_13775 PF04545 Sigma-70, region 4 DM57_13775 PF03979 Sigma-70 factor, region 1.1 DM57_13775 PF04546 Sigma-70, non-essential region DM57_1378 PF00416 Ribosomal protein S13/S18 DM57_13785 PF10410 DnaB-helicase binding domain of primase DM57_13785 PF08278 DNA primase DnaG DnaB-binding DM57_13785 PF08275 DNA primase catalytic core, N-terminal domain DM57_13785 PF01807 CHC2 zinc finger DM57_1379 PF00444 Ribosomal protein L36 DM57_13795 PF01165 Ribosomal protein S21 DM57_138 PF01610 Transposase DM57_138 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_138 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_1380 PF01176 Translation initiation factor 1A / IF-1 DM57_13805 PF00814 Glycoprotease family DM57_1381 PF00344 SecY translocase DM57_13815 PF02649 Type I GTP cyclohydrolase folE2 DM57_1382 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DM57_13820 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DM57_13820 PF02779 Transketolase, pyrimidine binding domain DM57_13820 PF02780 Transketolase, C-terminal domain DM57_13825 PF00348 Polyprenyl synthetase DM57_1383 PF00327 Ribosomal protein L30p/L7e DM57_13830 PF02609 Exonuclease VII small subunit DM57_1384 PF03719 Ribosomal protein S5, C-terminal domain DM57_1384 PF00333 Ribosomal protein S5, N-terminal domain DM57_13845 PF01738 Dienelactone hydrolase family DM57_1385 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DM57_1386 PF00347 Ribosomal protein L6 DM57_13860 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_13865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DM57_13865 PF01367 5'-3' exonuclease, C-terminal SAM fold DM57_13865 PF00476 DNA polymerase family A DM57_13865 PF01612 3'-5' exonuclease DM57_1387 PF00410 Ribosomal protein S8 DM57_13870 PF03641 Possible lysine decarboxylase DM57_1388 PF00253 Ribosomal protein S14p/S29e DM57_13880 PF04463 Protein of unknown function (DUF523) DM57_1389 PF00673 ribosomal L5P family C-terminus DM57_1389 PF00281 Ribosomal protein L5 DM57_1390 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DM57_13900 PF01048 Phosphorylase superfamily DM57_13900 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DM57_1391 PF00238 Ribosomal protein L14p/L23e DM57_13910 PF01636 Phosphotransferase enzyme family DM57_1392 PF00366 Ribosomal protein S17 DM57_13925 PF01047 MarR family DM57_1393 PF00831 Ribosomal L29 protein DM57_13930 PF02566 OsmC-like protein DM57_1394 PF00252 Ribosomal protein L16p/L10e DM57_13945 PF01569 PAP2 superfamily DM57_1395 PF00189 Ribosomal protein S3, C-terminal domain DM57_1395 PF07650 KH domain DM57_13955 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1396 PF00237 Ribosomal protein L22p/L17e DM57_13960 PF00005 ABC transporter DM57_13960 PF03459 TOBE domain DM57_13965 PF03459 TOBE domain DM57_13965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1397 PF00203 Ribosomal protein S19 DM57_1398 PF03947 Ribosomal Proteins L2, C-terminal domain DM57_1398 PF00181 Ribosomal Proteins L2, RNA binding domain DM57_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_13980 PF03466 LysR substrate binding domain DM57_1399 PF00276 Ribosomal protein L23 DM57_13995 PF03471 Transporter associated domain DM57_13995 PF00571 CBS domain DM57_13995 PF01595 Cyclin M transmembrane N-terminal domain DM57_14 PF02321 Outer membrane efflux protein DM57_1400 PF00573 Ribosomal protein L4/L1 family DM57_14000 PF02581 Thiamine monophosphate synthase DM57_14005 PF00128 Alpha amylase, catalytic domain DM57_14005 PF02806 Alpha amylase, C-terminal all-beta domain DM57_14005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DM57_1401 PF00297 Ribosomal protein L3 DM57_1402 PF00338 Ribosomal protein S10p/S20e DM57_14020 PF01070 FMN-dependent dehydrogenase DM57_1403 PF03143 Elongation factor Tu C-terminal domain DM57_1403 PF00009 Elongation factor Tu GTP binding domain DM57_1403 PF03144 Elongation factor Tu domain 2 DM57_1404 PF03144 Elongation factor Tu domain 2 DM57_1404 PF00009 Elongation factor Tu GTP binding domain DM57_1404 PF03764 Elongation factor G, domain IV DM57_1404 PF14492 Elongation Factor G, domain II DM57_1404 PF00679 Elongation factor G C-terminus DM57_1405 PF00177 Ribosomal protein S7p/S5e DM57_14055 PF02397 Bacterial sugar transferase DM57_1406 PF00164 Ribosomal protein S12/S23 DM57_1407 PF00271 Helicase conserved C-terminal domain DM57_1407 PF00270 DEAD/DEAH box helicase DM57_1407 PF00570 HRDC domain DM57_1407 PF16124 RecQ zinc-binding DM57_1407 PF09382 RQC domain DM57_14075 PF13183 4Fe-4S dicluster domain DM57_14075 PF02754 Cysteine-rich domain DM57_1408 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_1408 PF01610 Transposase DM57_1408 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_14080 PF02915 Rubrerythrin DM57_14085 PF01510 N-acetylmuramoyl-L-alanine amidase DM57_1409 PF04998 RNA polymerase Rpb1, domain 5 DM57_1409 PF04983 RNA polymerase Rpb1, domain 3 DM57_1409 PF00623 RNA polymerase Rpb1, domain 2 DM57_1409 PF05000 RNA polymerase Rpb1, domain 4 DM57_1409 PF04997 RNA polymerase Rpb1, domain 1 DM57_14090 PF08281 Sigma-70, region 4 DM57_14090 PF04542 Sigma-70 region 2 DM57_1410 PF04563 RNA polymerase beta subunit DM57_1410 PF04560 RNA polymerase Rpb2, domain 7 DM57_1410 PF00562 RNA polymerase Rpb2, domain 6 DM57_1410 PF10385 RNA polymerase beta subunit external 1 domain DM57_1410 PF04565 RNA polymerase Rpb2, domain 3 DM57_1410 PF04561 RNA polymerase Rpb2, domain 2 DM57_14100 PF03795 YCII-related domain DM57_14105 PF03795 YCII-related domain DM57_1411 PF00542 Ribosomal protein L7/L12 C-terminal domain DM57_1411 PF16320 Ribosomal protein L7/L12 dimerisation domain DM57_1412 PF00466 Ribosomal protein L10 DM57_14125 PF01594 AI-2E family transporter DM57_1413 PF00687 Ribosomal protein L1p/L10e family DM57_14135 PF07715 TonB-dependent Receptor Plug Domain DM57_14135 PF00593 TonB dependent receptor DM57_1414 PF03946 Ribosomal protein L11, N-terminal domain DM57_1414 PF00298 Ribosomal protein L11, RNA binding domain DM57_14140 PF07690 Major Facilitator Superfamily DM57_14145 PF00107 Zinc-binding dehydrogenase DM57_14145 PF16884 N-terminal domain of oxidoreductase DM57_1415 PF00467 KOW motif DM57_1415 PF02357 Transcription termination factor nusG DM57_1416 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DM57_1418 PF03143 Elongation factor Tu C-terminal domain DM57_1418 PF00009 Elongation factor Tu GTP binding domain DM57_1418 PF03144 Elongation factor Tu domain 2 DM57_14180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_14180 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_14180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_14185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_14185 PF03466 LysR substrate binding domain DM57_14210 PF04261 Dyp-type peroxidase family DM57_14215 PF00664 ABC transporter transmembrane region DM57_14215 PF00005 ABC transporter DM57_14220 PF01965 DJ-1/PfpI family DM57_14225 PF01965 DJ-1/PfpI family DM57_14225 PF12833 Helix-turn-helix domain DM57_14230 PF00579 tRNA synthetases class I (W and Y) DM57_1425 PF00174 Oxidoreductase molybdopterin binding domain DM57_14255 PF00654 Voltage gated chloride channel DM57_1426 PF01794 Ferric reductase like transmembrane component DM57_14265 PF00072 Response regulator receiver domain DM57_14265 PF01339 CheB methylesterase DM57_1427 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DM57_1427 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DM57_14270 PF00072 Response regulator receiver domain DM57_14270 PF01584 CheW-like domain DM57_14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_14270 PF01627 Hpt domain DM57_14280 PF01739 CheR methyltransferase, SAM binding domain DM57_1429 PF01491 Frataxin-like domain DM57_14290 PF02743 Cache domain DM57_14290 PF00672 HAMP domain DM57_14290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_14295 PF00512 His Kinase A (phospho-acceptor) domain DM57_14295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_1431 PF00905 Penicillin binding protein transpeptidase domain DM57_1431 PF17092 Penicillin-binding protein OB-like domain DM57_1431 PF00912 Transglycosylase DM57_14310 PF00171 Aldehyde dehydrogenase family DM57_14315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_14315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_14315 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_14320 PF00999 Sodium/hydrogen exchanger family DM57_14340 PF13091 PLD-like domain DM57_14345 PF01230 HIT domain DM57_1435 PF07660 Secretin and TonB N terminus short domain DM57_1435 PF00263 Bacterial type II and III secretion system protein DM57_1435 PF11741 AMIN domain DM57_1435 PF03958 Bacterial type II/III secretion system short domain DM57_14350 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_14350 PF14759 Reductase C-terminal DM57_14355 PF00355 Rieske [2Fe-2S] domain DM57_1436 PF01202 Shikimate kinase DM57_14360 PF00866 Ring hydroxylating beta subunit DM57_14365 PF00355 Rieske [2Fe-2S] domain DM57_14365 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DM57_1437 PF01761 3-dehydroquinate synthase DM57_14370 PF14525 AraC-binding-like domain DM57_14370 PF12833 Helix-turn-helix domain DM57_14375 PF03466 LysR substrate binding domain DM57_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1438 PF01966 HD domain DM57_1438 PF13286 Phosphohydrolase-associated domain DM57_14380 PF13378 Enolase C-terminal domain-like DM57_14380 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DM57_14385 PF04444 Catechol dioxygenase N terminus DM57_14385 PF00775 Dioxygenase DM57_1439 PF13416 Bacterial extracellular solute-binding protein DM57_14390 PF02426 Muconolactone delta-isomerase DM57_14395 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DM57_1440 PF00528 Binding-protein-dependent transport system inner membrane component DM57_14400 PF00510 Cytochrome c oxidase subunit III DM57_14405 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM57_1441 PF00528 Binding-protein-dependent transport system inner membrane component DM57_14410 PF06481 COX Aromatic Rich Motif DM57_14410 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DM57_1442 PF00005 ABC transporter DM57_1442 PF17912 MalK OB fold domain DM57_14420 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_14420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM57_14425 PF12833 Helix-turn-helix domain DM57_14425 PF02311 AraC-like ligand binding domain DM57_1443 PF03009 Glycerophosphoryl diester phosphodiesterase family DM57_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_14435 PF03466 LysR substrate binding domain DM57_14440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DM57_14440 PF00355 Rieske [2Fe-2S] domain DM57_14445 PF00866 Ring hydroxylating beta subunit DM57_14450 PF00970 Oxidoreductase FAD-binding domain DM57_14450 PF00175 Oxidoreductase NAD-binding domain DM57_14450 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_14455 PF00106 short chain dehydrogenase DM57_1446 PF01493 GXGXG motif DM57_1446 PF04898 Glutamate synthase central domain DM57_1446 PF00310 Glutamine amidotransferases class-II DM57_1446 PF01645 Conserved region in glutamate synthase DM57_1447 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_1447 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DM57_14470 PF00857 Isochorismatase family DM57_1448 PF01235 Sodium:alanine symporter family DM57_14490 PF01610 Transposase DM57_14490 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_14490 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_1450 PF06472 ABC transporter transmembrane region 2 DM57_1450 PF00005 ABC transporter DM57_14505 PF00324 Amino acid permease DM57_1451 PF01266 FAD dependent oxidoreductase DM57_1453 PF05690 Thiazole biosynthesis protein ThiG DM57_14530 PF00990 Diguanylate cyclase, GGDEF domain DM57_14530 PF05231 MASE1 DM57_14530 PF08447 PAS fold DM57_14530 PF08448 PAS fold DM57_14530 PF00563 EAL domain DM57_14530 PF13426 PAS domain DM57_14535 PF00561 alpha/beta hydrolase fold DM57_1455 PF00005 ABC transporter DM57_1456 PF02405 Permease MlaE DM57_14565 PF00005 ABC transporter DM57_1457 PF02470 MlaD protein DM57_14575 PF00067 Cytochrome P450 DM57_14585 PF00698 Acyl transferase domain DM57_14585 PF16197 Ketoacyl-synthetase C-terminal extension DM57_14585 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_14585 PF08659 KR domain DM57_14585 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_14585 PF00550 Phosphopantetheine attachment site DM57_146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_146 PF03466 LysR substrate binding domain DM57_14605 PF00202 Aminotransferase class-III DM57_1461 PF00005 ABC transporter DM57_14615 PF00005 ABC transporter DM57_1462 PF01061 ABC-2 type transporter DM57_14620 PF00528 Binding-protein-dependent transport system inner membrane component DM57_14625 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_14635 PF13249 Squalene-hopene cyclase N-terminal domain DM57_14635 PF13243 Squalene-hopene cyclase C-terminal domain DM57_1464 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM57_1465 PF01634 ATP phosphoribosyltransferase DM57_14655 PF00990 Diguanylate cyclase, GGDEF domain DM57_14655 PF05230 MASE2 domain DM57_1466 PF00815 Histidinol dehydrogenase DM57_14665 PF00072 Response regulator receiver domain DM57_14665 PF00486 Transcriptional regulatory protein, C terminal DM57_1467 PF00155 Aminotransferase class I and II DM57_14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_14670 PF00512 His Kinase A (phospho-acceptor) domain DM57_14670 PF13188 PAS domain DM57_14670 PF00072 Response regulator receiver domain DM57_14670 PF08448 PAS fold DM57_14675 PF03358 NADPH-dependent FMN reductase DM57_1468 PF00475 Imidazoleglycerol-phosphate dehydratase DM57_14680 PF08281 Sigma-70, region 4 DM57_14680 PF04542 Sigma-70 region 2 DM57_1469 PF01914 MarC family integral membrane protein DM57_14690 PF03960 ArsC family DM57_14695 PF13614 AAA domain DM57_147 PF04079 Segregation and condensation complex subunit ScpB DM57_1470 PF00117 Glutamine amidotransferase class-I DM57_1471 PF00977 Histidine biosynthesis protein DM57_1472 PF00977 Histidine biosynthesis protein DM57_1473 PF01502 Phosphoribosyl-AMP cyclohydrolase DM57_1474 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DM57_14745 PF00155 Aminotransferase class I and II DM57_14750 PF00107 Zinc-binding dehydrogenase DM57_14750 PF08240 Alcohol dehydrogenase GroES-like domain DM57_14760 PF00440 Bacterial regulatory proteins, tetR family DM57_1477 PF02416 mttA/Hcf106 family DM57_14775 PF00180 Isocitrate/isopropylmalate dehydrogenase DM57_1478 PF02416 mttA/Hcf106 family DM57_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_14780 PF03466 LysR substrate binding domain DM57_1479 PF00902 Sec-independent protein translocase protein (TatC) DM57_148 PF00849 RNA pseudouridylate synthase DM57_148 PF01479 S4 domain DM57_1480 PF17820 PDZ domain DM57_1480 PF13180 PDZ domain DM57_1481 PF01784 NIF3 (NGG1p interacting factor 3) DM57_14815 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DM57_1482 PF00355 Rieske [2Fe-2S] domain DM57_1482 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DM57_1483 PF00033 Cytochrome b/b6/petB DM57_1483 PF00032 Cytochrome b(C-terminal)/b6/petD DM57_1484 PF02167 Cytochrome C1 family DM57_1485 PF00043 Glutathione S-transferase, C-terminal domain DM57_1485 PF02798 Glutathione S-transferase, N-terminal domain DM57_1486 PF04386 Stringent starvation protein B DM57_14875 PF02321 Outer membrane efflux protein DM57_149 PF17384 RimP C-terminal SH3 domain DM57_149 PF02576 RimP N-terminal domain DM57_1490 PF01381 Helix-turn-helix DM57_1491 PF05973 Phage derived protein Gp49-like (DUF891) DM57_1492 PF01527 Transposase DM57_1495 PF01313 Bacterial export proteins, family 3 DM57_14950 PF00698 Acyl transferase domain DM57_1496 PF01311 Bacterial export proteins, family 1 DM57_1497 PF00376 MerR family regulatory protein DM57_1497 PF09278 MerR, DNA binding DM57_1498 PF13649 Methyltransferase domain DM57_15 PF00419 Fimbrial protein DM57_150 PF08529 NusA N-terminal domain DM57_150 PF13184 NusA-like KH domain DM57_1501 PF00005 ABC transporter DM57_1502 PF00528 Binding-protein-dependent transport system inner membrane component DM57_1503 PF00512 His Kinase A (phospho-acceptor) domain DM57_1503 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_1504 PF00072 Response regulator receiver domain DM57_1504 PF00486 Transcriptional regulatory protein, C terminal DM57_1505 PF13609 Gram-negative porin DM57_1506 PF01555 DNA methylase DM57_1506 PF18273 Type III R-M EcoP15I C-terminal domain DM57_1507 PF04851 Type III restriction enzyme, res subunit DM57_1507 PF08774 VRR-NUC domain DM57_1508 PF13609 Gram-negative porin DM57_15095 PF00561 alpha/beta hydrolase fold DM57_151 PF00009 Elongation factor Tu GTP binding domain DM57_151 PF11987 Translation-initiation factor 2 DM57_151 PF08364 Bacterial translation initiation factor IF-2 associated region DM57_151 PF04760 Translation initiation factor IF-2, N-terminal region DM57_1510 PF00005 ABC transporter DM57_1511 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM57_1511 PF00005 ABC transporter DM57_1512 PF02653 Branched-chain amino acid transport system / permease component DM57_1512 PF11862 Domain of unknown function (DUF3382) DM57_1515 PF00171 Aldehyde dehydrogenase family DM57_15155 PF01610 Transposase DM57_15155 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_15155 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_1517 PF17409 MoaF C-terminal domain DM57_1517 PF10703 MoaF N-terminal domain DM57_1519 PF00732 GMC oxidoreductase DM57_1519 PF05199 GMC oxidoreductase DM57_152 PF02033 Ribosome-binding factor A DM57_1520 PF03551 Transcriptional regulator PadR-like family DM57_1523 PF01527 Transposase DM57_1524 PF00813 FliP family DM57_15245 PF00585 C-terminal regulatory domain of Threonine dehydratase DM57_15245 PF00291 Pyridoxal-phosphate dependent enzyme DM57_1525 PF04347 Flagellar biosynthesis protein, FliO DM57_1526 PF16973 Flagellar motor switch protein FliN N-terminal DM57_1526 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM57_1527 PF02154 Flagellar motor switch protein FliM DM57_1527 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DM57_15280 PF00825 Ribonuclease P DM57_1529 PF04172 LrgB-like family DM57_153 PF09157 Pseudouridine synthase II TruB, C-terminal DM57_153 PF16198 tRNA pseudouridylate synthase B C-terminal domain DM57_153 PF01509 TruB family pseudouridylate synthase (N terminal domain) DM57_1530 PF03788 LrgA family DM57_1531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1531 PF03466 LysR substrate binding domain DM57_1532 PF07690 Major Facilitator Superfamily DM57_1533 PF01047 MarR family DM57_1535 PF02321 Outer membrane efflux protein DM57_15365 PF00156 Phosphoribosyl transferase domain DM57_1539 PF03934 Type II secretion system (T2SS), protein K DM57_154 PF07690 Major Facilitator Superfamily DM57_1541 PF02501 Type II secretion system (T2SS), protein I DM57_1541 PF07963 Prokaryotic N-terminal methylation motif DM57_1542 PF07963 Prokaryotic N-terminal methylation motif DM57_1542 PF12019 Type II transport protein GspH DM57_1543 PF07963 Prokaryotic N-terminal methylation motif DM57_1543 PF08334 Type II secretion system (T2SS), protein G DM57_15435 PF01527 Transposase DM57_1545 PF00482 Type II secretion system (T2SS), protein F DM57_15455 PF01527 Transposase DM57_1546 PF00437 Type II/IV secretion system protein DM57_15460 PF00313 'Cold-shock' DNA-binding domain DM57_1547 PF03958 Bacterial type II/III secretion system short domain DM57_1547 PF00263 Bacterial type II and III secretion system protein DM57_1548 PF01464 Transglycosylase SLT domain DM57_1549 PF07683 Cobalamin synthesis protein cobW C-terminal domain DM57_1549 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM57_15490 PF02581 Thiamine monophosphate synthase DM57_155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_155 PF00529 HlyD membrane-fusion protein of T1SS DM57_15505 PF03884 DNA gyrase inhibitor YacG DM57_1556 PF00324 Amino acid permease DM57_1558 PF00034 Cytochrome c DM57_15585 PF01527 Transposase DM57_1559 PF04972 BON domain DM57_15590 PF05159 Capsule polysaccharide biosynthesis protein DM57_156 PF02321 Outer membrane efflux protein DM57_1560 PF13580 SIS domain DM57_1561 PF02021 Uncharacterised protein family UPF0102 DM57_1562 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_1564 PF00012 Hsp70 protein DM57_15655 PF02146 Sir2 family DM57_157 PF01047 MarR family DM57_1573 PF01433 Peptidase family M1 domain DM57_1573 PF11838 ERAP1-like C-terminal domain DM57_15730 PF01467 Cytidylyltransferase-like DM57_1576 PF00529 HlyD membrane-fusion protein of T1SS DM57_1576 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_1577 PF03412 Peptidase C39 family DM57_1577 PF00664 ABC transporter transmembrane region DM57_1577 PF00005 ABC transporter DM57_1583 PF00691 OmpA family DM57_1585 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_1585 PF00004 ATPase family associated with various cellular activities (AAA) DM57_1585 PF17871 AAA lid domain DM57_1585 PF07724 AAA domain (Cdc48 subfamily) DM57_15875 PF01527 Transposase DM57_159 PF00676 Dehydrogenase E1 component DM57_159 PF02779 Transketolase, pyrimidine binding domain DM57_159 PF16078 2-oxoglutarate dehydrogenase N-terminus DM57_159 PF16870 2-oxoglutarate dehydrogenase C-terminal DM57_1590 PF03060 Nitronate monooxygenase DM57_1591 PF01738 Dienelactone hydrolase family DM57_15910 PF01527 Transposase DM57_1592 PF01425 Amidase DM57_1593 PF02219 Methylenetetrahydrofolate reductase DM57_1594 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DM57_1595 PF05221 S-adenosyl-L-homocysteine hydrolase DM57_1595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DM57_1596 PF04539 Sigma-70 region 3 DM57_1596 PF04545 Sigma-70, region 4 DM57_1596 PF04542 Sigma-70 region 2 DM57_15985 PF13018 Extended Signal Peptide of Type V secretion system DM57_15985 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_15985 PF03895 YadA-like membrane anchor domain DM57_15985 PF05658 Head domain of trimeric autotransporter adhesin DM57_1599 PF00771 FHIPEP family DM57_16 PF13954 PapC N-terminal domain DM57_16 PF00577 Outer membrane usher protein DM57_16 PF13953 PapC C-terminal domain DM57_160 PF00364 Biotin-requiring enzyme DM57_160 PF02817 e3 binding domain DM57_160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DM57_1601 PF01312 FlhB HrpN YscU SpaS Family DM57_1605 PF04344 Chemotaxis phosphatase, CheZ DM57_1606 PF00072 Response regulator receiver domain DM57_1607 PF00072 Response regulator receiver domain DM57_1607 PF01339 CheB methylesterase DM57_16070 PF01476 LysM domain DM57_16070 PF08525 Opacity-associated protein A N-terminal motif DM57_16070 PF01551 Peptidase family M23 DM57_1608 PF03975 CheD chemotactic sensory transduction DM57_1609 PF01739 CheR methyltransferase, SAM binding domain DM57_1609 PF03705 CheR methyltransferase, all-alpha domain DM57_161 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM57_161 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_1610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_1610 PF00672 HAMP domain DM57_1610 PF02203 Tar ligand binding domain homologue DM57_1611 PF01584 CheW-like domain DM57_1612 PF01584 CheW-like domain DM57_1612 PF09078 CheY binding DM57_1612 PF02895 Signal transducing histidine kinase, homodimeric domain DM57_1612 PF01627 Hpt domain DM57_1612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_1613 PF01339 CheB methylesterase DM57_1613 PF00072 Response regulator receiver domain DM57_1616 PF01618 MotA/TolQ/ExbB proton channel family DM57_1617 PF05280 Flagellar transcriptional activator (FlhC) DM57_1618 PF05247 Flagellar transcriptional activator (FlhD) DM57_1619 PF13439 Glycosyltransferase Family 4 DM57_162 PF03969 AFG1-like ATPase DM57_1621 PF00230 Major intrinsic protein DM57_1624 PF03352 Methyladenine glycosylase DM57_1624 PF00958 GMP synthase C terminal domain DM57_1624 PF00117 Glutamine amidotransferase class-I DM57_1624 PF13673 Acetyltransferase (GNAT) domain DM57_1624 PF13302 Acetyltransferase (GNAT) domain DM57_1625 PF01165 Ribosomal protein S21 DM57_1626 PF00669 Bacterial flagellin N-terminal helical region DM57_1626 PF00700 Bacterial flagellin C-terminal helical region DM57_1630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM57_1631 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DM57_1631 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DM57_1633 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DM57_1633 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DM57_1639 PF01810 LysE type translocator DM57_1640 PF04185 Phosphoesterase family DM57_1641 PF05643 Putative bacterial lipoprotein (DUF799) DM57_1643 PF03783 Curli production assembly/transport component CsgG DM57_1645 PF00561 alpha/beta hydrolase fold DM57_1646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_1646 PF02203 Tar ligand binding domain homologue DM57_1646 PF00672 HAMP domain DM57_1647 PF08031 Berberine and berberine like DM57_1647 PF01565 FAD binding domain DM57_1648 PF18416 N-acetylglucosamine binding protein domain 2 DM57_1648 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DM57_1651 PF01527 Transposase DM57_1653 PF00589 Phage integrase family DM57_1655 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DM57_1656 PF00580 UvrD/REP helicase N-terminal domain DM57_1656 PF13361 UvrD-like helicase C-terminal domain DM57_1659 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM57_1659 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM57_1661 PF01571 Aminomethyltransferase folate-binding domain DM57_1661 PF08669 Glycine cleavage T-protein C-terminal barrel domain DM57_1662 PF01597 Glycine cleavage H-protein DM57_1663 PF02347 Glycine cleavage system P-protein DM57_1665 PF03313 Serine dehydratase alpha chain DM57_1665 PF03315 Serine dehydratase beta chain DM57_1667 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_1667 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_1667 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_1669 PF12833 Helix-turn-helix domain DM57_1670 PF00171 Aldehyde dehydrogenase family DM57_1672 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DM57_1673 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DM57_1675 PF13520 Amino acid permease DM57_1677 PF05552 Conserved TM helix DM57_1679 PF00403 Heavy-metal-associated domain DM57_1680 PF13411 MerR HTH family regulatory protein DM57_1682 PF01565 FAD binding domain DM57_1682 PF02913 FAD linked oxidases, C-terminal domain DM57_1684 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_1685 PF00155 Aminotransferase class I and II DM57_1687 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_1687 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_1687 PF18158 Adaptive response protein AidB N-terminal domain DM57_1688 PF00501 AMP-binding enzyme DM57_1688 PF13193 AMP-binding enzyme C-terminal domain DM57_1689 PF13458 Periplasmic binding protein DM57_169 PF01527 Transposase DM57_1690 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DM57_1690 PF14850 DNA-binding domain of Proline dehydrogenase DM57_1690 PF00171 Aldehyde dehydrogenase family DM57_1690 PF01619 Proline dehydrogenase DM57_1692 PF00271 Helicase conserved C-terminal domain DM57_1692 PF17764 3′ DNA-binding domain (3′BD) DM57_1692 PF18074 Primosomal protein N C-terminal domain DM57_1692 PF00270 DEAD/DEAH box helicase DM57_1692 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DM57_1693 PF01208 Uroporphyrinogen decarboxylase (URO-D) DM57_1694 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_1695 PF13380 CoA binding domain DM57_1696 PF13193 AMP-binding enzyme C-terminal domain DM57_1696 PF00501 AMP-binding enzyme DM57_1697 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DM57_1697 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DM57_1698 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM57_1698 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_1699 PF00231 ATP synthase DM57_17 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DM57_17 PF02753 Pili assembly chaperone PapD, C-terminal domain DM57_1700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_1700 PF00306 ATP synthase alpha/beta chain, C terminal domain DM57_1700 PF02874 ATP synthase alpha/beta family, beta-barrel domain DM57_1701 PF00213 ATP synthase delta (OSCP) subunit DM57_1702 PF00430 ATP synthase B/B' CF(0) DM57_1703 PF00137 ATP synthase subunit C DM57_1704 PF00119 ATP synthase A chain DM57_1706 PF03600 Citrate transporter DM57_1707 PF17762 HTH domain found in ParB protein DM57_1707 PF02195 ParB-like nuclease domain DM57_1708 PF13614 AAA domain DM57_1709 PF02527 rRNA small subunit methyltransferase G DM57_171 PF01804 Penicillin amidase DM57_1710 PF01134 Glucose inhibited division protein A DM57_1710 PF13932 GidA associated domain DM57_1711 PF00005 ABC transporter DM57_1712 PF00005 ABC transporter DM57_1712 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM57_1717 PF02653 Branched-chain amino acid transport system / permease component DM57_1719 PF00005 ABC transporter DM57_1720 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM57_1720 PF00005 ABC transporter DM57_1721 PF05199 GMC oxidoreductase DM57_1721 PF00732 GMC oxidoreductase DM57_1722 PF00171 Aldehyde dehydrogenase family DM57_1723 PF03466 LysR substrate binding domain DM57_1723 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1725 PF01037 Lrp/AsnC ligand binding domain DM57_1726 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DM57_1727 PF01329 Pterin 4 alpha carbinolamine dehydratase DM57_1729 PF00072 Response regulator receiver domain DM57_1729 PF00486 Transcriptional regulatory protein, C terminal DM57_1730 PF08521 Two-component sensor kinase N-terminal DM57_1730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_1730 PF00512 His Kinase A (phospho-acceptor) domain DM57_1732 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DM57_1733 PF00117 Glutamine amidotransferase class-I DM57_1733 PF00958 GMP synthase C terminal domain DM57_1733 PF02540 NAD synthase DM57_1735 PF04107 Glutamate-cysteine ligase family 2(GCS2) DM57_1737 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DM57_1737 PF01266 FAD dependent oxidoreductase DM57_1738 PF00216 Bacterial DNA-binding protein DM57_174 PF00072 Response regulator receiver domain DM57_174 PF00196 Bacterial regulatory proteins, luxR family DM57_1740 PF03330 Lytic transglycolase DM57_1740 PF05036 Sporulation related domain DM57_1741 PF00753 Metallo-beta-lactamase superfamily DM57_1743 PF01037 Lrp/AsnC ligand binding domain DM57_1747 PF07690 Major Facilitator Superfamily DM57_1748 PF13458 Periplasmic binding protein DM57_1750 PF01527 Transposase DM57_1751 PF00436 Single-strand binding protein family DM57_1752 PF07690 Major Facilitator Superfamily DM57_1753 PF17760 UvrA interaction domain DM57_1753 PF17755 UvrA DNA-binding domain DM57_1755 PF00551 Formyl transferase DM57_1757 PF01810 LysE type translocator DM57_1759 PF02080 TrkA-C domain DM57_1759 PF02254 TrkA-N domain DM57_1759 PF00999 Sodium/hydrogen exchanger family DM57_1760 PF01380 SIS domain DM57_1760 PF00571 CBS domain DM57_1764 PF00005 ABC transporter DM57_1764 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM57_1766 PF00309 Sigma-54 factor, Activator interacting domain (AID) DM57_1766 PF04963 Sigma-54 factor, core binding domain DM57_1766 PF04552 Sigma-54, DNA binding domain DM57_1767 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DM57_1768 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DM57_1769 PF07475 HPr Serine kinase C-terminal domain DM57_1769 PF02603 HPr Serine kinase N terminus DM57_1770 PF03668 P-loop ATPase protein family DM57_1772 PF00633 Helix-hairpin-helix motif DM57_1772 PF10576 Iron-sulfur binding domain of endonuclease III DM57_1772 PF00730 HhH-GPD superfamily base excision DNA repair protein DM57_1772 PF14815 NUDIX domain DM57_1773 PF06827 Zinc finger found in FPG and IleRS DM57_1773 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DM57_1773 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DM57_1776 PF08544 GHMP kinases C terminal DM57_1776 PF00288 GHMP kinases N terminal domain DM57_1778 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DM57_1778 PF14572 Phosphoribosyl synthetase-associated domain DM57_1779 PF01386 Ribosomal L25p family DM57_1779 PF14693 Ribosomal protein TL5, C-terminal domain DM57_1780 PF01195 Peptidyl-tRNA hydrolase DM57_1781 PF00155 Aminotransferase class I and II DM57_1782 PF00037 4Fe-4S binding domain DM57_1783 PF01467 Cytidylyltransferase-like DM57_1785 PF02881 SRP54-type protein, helical bundle domain DM57_1785 PF00448 SRP54-type protein, GTPase domain DM57_1786 PF02798 Glutathione S-transferase, N-terminal domain DM57_1786 PF14497 Glutathione S-transferase, C-terminal domain DM57_1787 PF04324 BFD-like [2Fe-2S] binding domain DM57_1787 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DM57_1787 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DM57_1787 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_1787 PF18267 Rubredoxin NAD+ reductase C-terminal domain DM57_1788 PF00355 Rieske [2Fe-2S] domain DM57_1789 PF01568 Molydopterin dinucleotide binding domain DM57_1789 PF00384 Molybdopterin oxidoreductase DM57_1789 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM57_1790 PF02885 Glycosyl transferase family, helical bundle domain DM57_1792 PF08502 LeuA allosteric (dimerisation) domain DM57_1792 PF00682 HMGL-like DM57_1794 PF09411 Lipid A 3-O-deacylase (PagL) DM57_1795 PF04545 Sigma-70, region 4 DM57_1795 PF00140 Sigma-70 factor, region 1.2 DM57_1795 PF04542 Sigma-70 region 2 DM57_1801 PF00005 ABC transporter DM57_1802 PF03846 Cell division inhibitor SulA DM57_1804 PF07733 Bacterial DNA polymerase III alpha NTPase domain DM57_1804 PF02811 PHP domain DM57_1804 PF14579 Helix-hairpin-helix motif DM57_1804 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DM57_1806 PF07690 Major Facilitator Superfamily DM57_1808 PF00202 Aminotransferase class-III DM57_1811 PF12857 TOBE-like domain DM57_1811 PF00005 ABC transporter DM57_1813 PF13649 Methyltransferase domain DM57_1815 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_1815 PF12806 Acetyl-CoA dehydrogenase C-terminal like DM57_1815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_1815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_1817 PF00501 AMP-binding enzyme DM57_1817 PF13193 AMP-binding enzyme C-terminal domain DM57_1817 PF00668 Condensation domain DM57_1817 PF00550 Phosphopantetheine attachment site DM57_182 PF13953 PapC C-terminal domain DM57_182 PF13954 PapC N-terminal domain DM57_182 PF00577 Outer membrane usher protein DM57_1825 PF00501 AMP-binding enzyme DM57_1826 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1826 PF03466 LysR substrate binding domain DM57_1827 PF07702 UTRA domain DM57_1827 PF00392 Bacterial regulatory proteins, gntR family DM57_1828 PF01979 Amidohydrolase family DM57_1829 PF01380 SIS domain DM57_183 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DM57_183 PF02753 Pili assembly chaperone PapD, C-terminal domain DM57_1830 PF05524 PEP-utilising enzyme, N-terminal DM57_1830 PF00391 PEP-utilising enzyme, mobile domain DM57_1830 PF02896 PEP-utilising enzyme, TIM barrel domain DM57_1830 PF00381 PTS HPr component phosphorylation site DM57_1830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DM57_1831 PF02378 Phosphotransferase system, EIIC DM57_1831 PF00367 phosphotransferase system, EIIB DM57_1831 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DM57_1832 PF03173 Putative carbohydrate binding domain DM57_1832 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain DM57_1832 PF02838 Glycosyl hydrolase family 20, domain 2 DM57_1832 PF00728 Glycosyl hydrolase family 20, catalytic domain DM57_1833 PF08173 Membrane bound YbgT-like protein DM57_1835 PF02322 Cytochrome bd terminal oxidase subunit II DM57_1836 PF01654 Cytochrome bd terminal oxidase subunit I DM57_1838 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_1838 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_1838 PF01610 Transposase DM57_1840 PF03180 NLPA lipoprotein DM57_1841 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_1841 PF00672 HAMP domain DM57_1841 PF02203 Tar ligand binding domain homologue DM57_1843 PF02630 SCO1/SenC DM57_1844 PF01040 UbiA prenyltransferase family DM57_1845 PF02628 Cytochrome oxidase assembly protein DM57_1849 PF00510 Cytochrome c oxidase subunit III DM57_185 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_185 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_185 PF01610 Transposase DM57_1851 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DM57_1852 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM57_1853 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DM57_1853 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DM57_1855 PF08241 Methyltransferase domain DM57_1856 PF00156 Phosphoribosyl transferase domain DM57_1857 PF00588 SpoU rRNA Methylase family DM57_1858 PF01661 Macro domain DM57_1859 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DM57_1859 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DM57_1860 PF02556 Preprotein translocase subunit SecB DM57_1861 PF00462 Glutaredoxin DM57_1862 PF00581 Rhodanese-like domain DM57_1863 PF00300 Histidine phosphatase superfamily (branch 1) DM57_1864 PF03572 Peptidase family S41 DM57_1864 PF13180 PDZ domain DM57_1865 PF00899 ThiF family DM57_1866 PF02896 PEP-utilising enzyme, TIM barrel domain DM57_1866 PF00391 PEP-utilising enzyme, mobile domain DM57_1866 PF05524 PEP-utilising enzyme, N-terminal DM57_1867 PF00381 PTS HPr component phosphorylation site DM57_1869 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DM57_1869 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DM57_1872 PF00909 Ammonium Transporter Family DM57_1873 PF00543 Nitrogen regulatory protein P-II DM57_1874 PF04380 Membrane fusogenic activity DM57_1875 PF01078 Magnesium chelatase, subunit ChlI DM57_1875 PF13335 Magnesium chelatase, subunit ChlI C-terminal DM57_1877 PF13193 AMP-binding enzyme C-terminal domain DM57_1877 PF00668 Condensation domain DM57_1877 PF00501 AMP-binding enzyme DM57_1877 PF00975 Thioesterase domain DM57_1877 PF00550 Phosphopantetheine attachment site DM57_1879 PF00578 AhpC/TSA family DM57_1880 PF02954 Bacterial regulatory protein, Fis family DM57_1880 PF00158 Sigma-54 interaction domain DM57_1880 PF00072 Response regulator receiver domain DM57_1883 PF00375 Sodium:dicarboxylate symporter family DM57_1884 PF00474 Sodium:solute symporter family DM57_1886 PF02515 CoA-transferase family III DM57_1887 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_1887 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_1887 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_1888 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_1888 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_1888 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_1889 PF00378 Enoyl-CoA hydratase/isomerase DM57_1889 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM57_1889 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM57_1890 PF03466 LysR substrate binding domain DM57_1890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_1895 PF08240 Alcohol dehydrogenase GroES-like domain DM57_1895 PF00107 Zinc-binding dehydrogenase DM57_1897 PF06719 AraC-type transcriptional regulator N-terminus DM57_1897 PF12833 Helix-turn-helix domain DM57_1899 PF07690 Major Facilitator Superfamily DM57_19 PF00005 ABC transporter DM57_19 PF00664 ABC transporter transmembrane region DM57_1901 PF00561 alpha/beta hydrolase fold DM57_1902 PF00440 Bacterial regulatory proteins, tetR family DM57_1904 PF00696 Amino acid kinase family DM57_1906 PF00512 His Kinase A (phospho-acceptor) domain DM57_1906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_1907 PF00072 Response regulator receiver domain DM57_1908 PF07724 AAA domain (Cdc48 subfamily) DM57_1908 PF00004 ATPase family associated with various cellular activities (AAA) DM57_1909 PF00227 Proteasome subunit DM57_1910 PF01258 Prokaryotic dksA/traR C4-type zinc finger DM57_1911 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM57_1911 PF07683 Cobalamin synthesis protein cobW C-terminal domain DM57_1912 PF17785 PUA-like domain DM57_1912 PF10672 S-adenosylmethionine-dependent methyltransferase DM57_1913 PF02899 Phage integrase, N-terminal SAM-like domain DM57_1913 PF00589 Phage integrase family DM57_1915 PF01678 Diaminopimelate epimerase DM57_1916 PF03279 Bacterial lipid A biosynthesis acyltransferase DM57_1917 PF02772 S-adenosylmethionine synthetase, central domain DM57_1917 PF02773 S-adenosylmethionine synthetase, C-terminal domain DM57_1917 PF00438 S-adenosylmethionine synthetase, N-terminal domain DM57_192 PF04820 Tryptophan halogenase DM57_1921 PF00248 Aldo/keto reductase family DM57_1924 PF07690 Major Facilitator Superfamily DM57_1926 PF01636 Phosphotransferase enzyme family DM57_1928 PF00171 Aldehyde dehydrogenase family DM57_193 PF00999 Sodium/hydrogen exchanger family DM57_1931 PF00732 GMC oxidoreductase DM57_1931 PF05199 GMC oxidoreductase DM57_1934 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_1934 PF18269 T3SS EscN ATPase C-terminal domain DM57_1936 PF14842 FliG N-terminal domain DM57_1936 PF14841 FliG middle domain DM57_1936 PF01706 FliG C-terminal domain DM57_1937 PF01514 Secretory protein of YscJ/FliF family DM57_1937 PF08345 Flagellar M-ring protein C-terminal DM57_1938 PF02049 Flagellar hook-basal body complex protein FliE DM57_1939 PF02561 Flagellar protein FliS DM57_194 PF00355 Rieske [2Fe-2S] domain DM57_1942 PF01312 FlhB HrpN YscU SpaS Family DM57_1945 PF13520 Amino acid permease DM57_1946 PF00072 Response regulator receiver domain DM57_1946 PF00196 Bacterial regulatory proteins, luxR family DM57_1949 PF00175 Oxidoreductase NAD-binding domain DM57_1949 PF00970 Oxidoreductase FAD-binding domain DM57_195 PF00355 Rieske [2Fe-2S] domain DM57_1950 PF01810 LysE type translocator DM57_1951 PF03372 Endonuclease/Exonuclease/phosphatase family DM57_1953 PF05362 Lon protease (S16) C-terminal proteolytic domain DM57_1953 PF00004 ATPase family associated with various cellular activities (AAA) DM57_1954 PF01266 FAD dependent oxidoreductase DM57_1955 PF01355 High potential iron-sulfur protein DM57_1956 PF07690 Major Facilitator Superfamily DM57_1957 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_1958 PF00528 Binding-protein-dependent transport system inner membrane component DM57_196 PF02734 DAK2 domain DM57_196 PF02733 Dak1 domain DM57_1961 PF00005 ABC transporter DM57_1961 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_1962 PF00005 ABC transporter DM57_1962 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_1966 PF03746 LamB/YcsF family DM57_1967 PF02626 Carboxyltransferase domain, subdomain A and B DM57_1968 PF02682 Carboxyltransferase domain, subdomain C and D DM57_1970 PF01812 5-formyltetrahydrofolate cyclo-ligase family DM57_1971 PF01464 Transglycosylase SLT domain DM57_1971 PF14718 Soluble lytic murein transglycosylase L domain DM57_1974 PF12627 Probable RNA and SrmB- binding site of polymerase A DM57_1974 PF01743 Poly A polymerase head domain DM57_1974 PF01966 HD domain DM57_1977 PF04316 Anti-sigma-28 factor, FlgM DM57_1978 PF17656 FlgA N-terminal domain DM57_1978 PF13144 Chaperone for flagella basal body P-ring formation DM57_198 PF02203 Tar ligand binding domain homologue DM57_198 PF00672 HAMP domain DM57_198 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_1980 PF00460 Flagella basal body rod protein DM57_1981 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM57_1981 PF00460 Flagella basal body rod protein DM57_1982 PF03963 Flagellar hook capping protein - N-terminal region DM57_1982 PF13860 FlgD Ig-like domain DM57_1982 PF13861 FlgD Tudor-like domain DM57_1983 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM57_1983 PF00460 Flagella basal body rod protein DM57_1983 PF07559 Flagellar basal body protein FlaE DM57_1984 PF00460 Flagella basal body rod protein DM57_1984 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM57_1985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM57_1985 PF00460 Flagella basal body rod protein DM57_1986 PF02107 Flagellar L-ring protein DM57_1987 PF02119 Flagellar P-ring protein DM57_1988 PF10135 Rod binding protein DM57_1988 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DM57_1989 PF07238 PilZ domain DM57_1989 PF07317 Flagellar regulator YcgR DM57_1990 PF00460 Flagella basal body rod protein DM57_1990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DM57_1991 PF00669 Bacterial flagellin N-terminal helical region DM57_1992 PF00860 Permease family DM57_1997 PF03831 PhnA domain DM57_1997 PF08274 PhnA Zinc-Ribbon DM57_1999 PF13609 Gram-negative porin DM57_200 PF00005 ABC transporter DM57_2005 PF01527 Transposase DM57_2006 PF00986 DNA gyrase B subunit, carboxyl terminus DM57_2006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2006 PF00204 DNA gyrase B DM57_2006 PF01751 Toprim domain DM57_2006 PF18053 DNA gyrase B subunit insert domain DM57_2007 PF02768 DNA polymerase III beta subunit, C-terminal domain DM57_2007 PF00712 DNA polymerase III beta subunit, N-terminal domain DM57_2007 PF02767 DNA polymerase III beta subunit, central domain DM57_2008 PF00308 Bacterial dnaA protein DM57_2008 PF08299 Bacterial dnaA protein helix-turn-helix DM57_2008 PF11638 DnaA N-terminal domain DM57_2009 PF00468 Ribosomal protein L34 DM57_201 PF02424 ApbE family DM57_2011 PF01809 Putative membrane protein insertion efficiency factor DM57_2012 PF14849 YidC periplasmic domain DM57_2012 PF02096 60Kd inner membrane protein DM57_2014 PF01926 50S ribosome-binding GTPase DM57_2014 PF10396 GTP-binding protein TrmE N-terminus DM57_2014 PF12631 MnmE helical domain DM57_2016 PF01527 Transposase DM57_2017 PF07152 YaeQ protein DM57_2019 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DM57_2019 PF12833 Helix-turn-helix domain DM57_2019 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DM57_2019 PF02805 Metal binding domain of Ada DM57_202 PF18793 Nitrous oxide reductase propeller repeat 2 DM57_202 PF13473 Cupredoxin-like domain DM57_202 PF18764 Nitrous oxide reductase propeller repeat DM57_2020 PF06029 AlkA N-terminal domain DM57_2020 PF00730 HhH-GPD superfamily base excision DNA repair protein DM57_2020 PF12833 Helix-turn-helix domain DM57_2020 PF02805 Metal binding domain of Ada DM57_2021 PF04262 Glutamate-cysteine ligase DM57_2022 PF03979 Sigma-70 factor, region 1.1 DM57_2022 PF04546 Sigma-70, non-essential region DM57_2022 PF00140 Sigma-70 factor, region 1.2 DM57_2022 PF04545 Sigma-70, region 4 DM57_2022 PF04539 Sigma-70 region 3 DM57_2022 PF04542 Sigma-70 region 2 DM57_2025 PF03466 LysR substrate binding domain DM57_2025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2026 PF13416 Bacterial extracellular solute-binding protein DM57_2027 PF00850 Histone deacetylase domain DM57_2028 PF00795 Carbon-nitrogen hydrolase DM57_203 PF05048 Periplasmic copper-binding protein (NosD) DM57_2034 PF01527 Transposase DM57_2035 PF01610 Transposase DM57_2035 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_2035 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_2039 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM57_2039 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM57_204 PF00005 ABC transporter DM57_2040 PF03466 LysR substrate binding domain DM57_2040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2041 PF01131 DNA topoisomerase DM57_2041 PF01751 Toprim domain DM57_2043 PF17782 DprA winged helix domain DM57_2043 PF02481 DNA recombination-mediator protein A DM57_2044 PF01327 Polypeptide deformylase DM57_2045 PF02911 Formyl transferase, C-terminal domain DM57_2045 PF00551 Formyl transferase DM57_2046 PF01810 LysE type translocator DM57_2047 PF01435 Peptidase family M48 DM57_2048 PF01189 16S rRNA methyltransferase RsmB/F DM57_2048 PF01029 NusB family DM57_205 PF12679 ABC-2 family transporter protein DM57_2050 PF00512 His Kinase A (phospho-acceptor) domain DM57_2050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2050 PF00989 PAS fold DM57_2050 PF00672 HAMP domain DM57_2051 PF02954 Bacterial regulatory protein, Fis family DM57_2051 PF00158 Sigma-54 interaction domain DM57_2051 PF00072 Response regulator receiver domain DM57_2053 PF06508 Queuosine biosynthesis protein QueC DM57_2055 PF01242 6-pyruvoyl tetrahydropterin synthase DM57_2056 PF03328 HpcH/HpaI aldolase/citrate lyase family DM57_2058 PF01098 Cell cycle protein DM57_2059 PF00905 Penicillin binding protein transpeptidase domain DM57_2059 PF03717 Penicillin-binding Protein dimerisation domain DM57_2063 PF02686 Glu-tRNAGln amidotransferase C subunit DM57_2064 PF01425 Amidase DM57_2065 PF02934 GatB/GatE catalytic domain DM57_2065 PF02637 GatB domain DM57_2066 PF03976 Polyphosphate kinase 2 (PPK2) DM57_2067 PF03372 Endonuclease/Exonuclease/phosphatase family DM57_2069 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DM57_2069 PF04055 Radical SAM superfamily DM57_2070 PF03099 Biotin/lipoate A/B protein ligase family DM57_2072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2072 PF03466 LysR substrate binding domain DM57_2073 PF04359 Protein of unknown function (DUF493) DM57_2074 PF01063 Amino-transferase class IV DM57_2075 PF00768 D-alanyl-D-alanine carboxypeptidase DM57_2075 PF07943 Penicillin-binding protein 5, C-terminal domain DM57_2081 PF00005 ABC transporter DM57_2082 PF02405 Permease MlaE DM57_2083 PF00149 Calcineurin-like phosphoesterase DM57_2083 PF02872 5'-nucleotidase, C-terminal domain DM57_2085 PF08279 HTH domain DM57_2085 PF03099 Biotin/lipoate A/B protein ligase family DM57_2085 PF02237 Biotin protein ligase C terminal domain DM57_2086 PF03309 Type III pantothenate kinase DM57_2088 PF01467 Cytidylyltransferase-like DM57_2094 PF00378 Enoyl-CoA hydratase/isomerase DM57_2098 PF12091 Protein of unknown function (DUF3567) DM57_2099 PF00809 Pterin binding enzyme DM57_2099 PF02310 B12 binding domain DM57_2099 PF02965 Vitamin B12 dependent methionine synthase, activation domain DM57_2099 PF02574 Homocysteine S-methyltransferase DM57_2099 PF02607 B12 binding domain DM57_21 PF01527 Transposase DM57_210 PF12801 4Fe-4S binding domain DM57_210 PF04205 FMN-binding domain DM57_2100 PF02965 Vitamin B12 dependent methionine synthase, activation domain DM57_2100 PF02574 Homocysteine S-methyltransferase DM57_2100 PF02310 B12 binding domain DM57_2100 PF00809 Pterin binding enzyme DM57_2100 PF02607 B12 binding domain DM57_2103 PF05746 DALR anticodon binding domain DM57_2103 PF00750 tRNA synthetases class I (R) DM57_2103 PF03485 Arginyl tRNA synthetase N terminal domain DM57_2105 PF13462 Thioredoxin DM57_2106 PF00106 short chain dehydrogenase DM57_211 PF12794 Mechanosensitive ion channel inner membrane domain 1 DM57_211 PF12795 Mechanosensitive ion channel porin domain DM57_211 PF00924 Mechanosensitive ion channel DM57_2110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_2113 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DM57_2114 PF00484 Carbonic anhydrase DM57_2115 PF02803 Thiolase, C-terminal domain DM57_2115 PF00108 Thiolase, N-terminal domain DM57_2119 PF00202 Aminotransferase class-III DM57_2120 PF00155 Aminotransferase class I and II DM57_2122 PF06968 Biotin and Thiamin Synthesis associated domain DM57_2122 PF04055 Radical SAM superfamily DM57_2123 PF03932 CutC family DM57_2125 PF00245 Alkaline phosphatase DM57_2126 PF00245 Alkaline phosphatase DM57_2131 PF13609 Gram-negative porin DM57_2133 PF13593 SBF-like CPA transporter family (DUF4137) DM57_2134 PF02203 Tar ligand binding domain homologue DM57_2134 PF00672 HAMP domain DM57_2134 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_2135 PF00356 Bacterial regulatory proteins, lacI family DM57_2137 PF00294 pfkB family carbohydrate kinase DM57_2143 PF01171 PP-loop family DM57_2144 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_2144 PF12804 MobA-like NTP transferase domain DM57_2145 PF01380 SIS domain DM57_2148 PF00873 AcrB/AcrD/AcrF family DM57_2149 PF00529 HlyD membrane-fusion protein of T1SS DM57_2149 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_2153 PF04536 TPM domain DM57_2154 PF04011 LemA family DM57_2155 PF04945 YHS domain DM57_2159 PF00764 Arginosuccinate synthase DM57_216 PF01544 CorA-like Mg2+ transporter protein DM57_2160 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_2160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM57_2168 PF01527 Transposase DM57_2169 PF13276 HTH-like domain DM57_2169 PF13683 Integrase core domain DM57_2170 PF02627 Carboxymuconolactone decarboxylase family DM57_2180 PF00069 Protein kinase domain DM57_2184 PF00596 Class II Aldolase and Adducin N-terminal domain DM57_2185 PF08448 PAS fold DM57_2185 PF00563 EAL domain DM57_2185 PF00990 Diguanylate cyclase, GGDEF domain DM57_2188 PF01050 Mannose-6-phosphate isomerase DM57_2188 PF00483 Nucleotidyl transferase DM57_2190 PF00534 Glycosyl transferases group 1 DM57_2190 PF13439 Glycosyltransferase Family 4 DM57_2192 PF00158 Sigma-54 interaction domain DM57_2192 PF00072 Response regulator receiver domain DM57_2192 PF02954 Bacterial regulatory protein, Fis family DM57_2198 PF00550 Phosphopantetheine attachment site DM57_2201 PF02397 Bacterial sugar transferase DM57_2202 PF10531 SLBB domain DM57_2202 PF02563 Polysaccharide biosynthesis/export protein DM57_2202 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DM57_2203 PF13439 Glycosyltransferase Family 4 DM57_2203 PF00534 Glycosyl transferases group 1 DM57_2208 PF07859 alpha/beta hydrolase fold DM57_2209 PF07690 Major Facilitator Superfamily DM57_2213 PF01380 SIS domain DM57_2213 PF01418 Helix-turn-helix domain, rpiR family DM57_2214 PF07969 Amidohydrolase family DM57_2215 PF01042 Endoribonuclease L-PSP DM57_2216 PF14489 QueF-like protein DM57_2216 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DM57_2222 PF01209 ubiE/COQ5 methyltransferase family DM57_2225 PF03109 ABC1 family DM57_2229 PF01336 OB-fold nucleic acid binding domain DM57_2229 PF00152 tRNA synthetases class II (D, K and N) DM57_2229 PF02938 GAD domain DM57_2230 PF00293 NUDIX domain DM57_2231 PF13091 PLD-like domain DM57_2233 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_2233 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_2233 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_2233 PF12806 Acetyl-CoA dehydrogenase C-terminal like DM57_2234 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM57_2234 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM57_2234 PF00378 Enoyl-CoA hydratase/isomerase DM57_2235 PF02803 Thiolase, C-terminal domain DM57_2235 PF00108 Thiolase, N-terminal domain DM57_2236 PF00378 Enoyl-CoA hydratase/isomerase DM57_2237 PF02634 FdhD/NarQ family DM57_2239 PF03061 Thioesterase superfamily DM57_2240 PF00005 ABC transporter DM57_2240 PF00664 ABC transporter transmembrane region DM57_2241 PF00483 Nucleotidyl transferase DM57_2242 PF01636 Phosphotransferase enzyme family DM57_2243 PF04453 LPS transport system D DM57_2244 PF00639 PPIC-type PPIASE domain DM57_2244 PF09312 SurA N-terminal domain DM57_2245 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DM57_2246 PF00398 Ribosomal RNA adenine dimethylase DM57_2248 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DM57_225 PF13193 AMP-binding enzyme C-terminal domain DM57_225 PF00501 AMP-binding enzyme DM57_225 PF00550 Phosphopantetheine attachment site DM57_225 PF00668 Condensation domain DM57_2250 PF01553 Acyltransferase DM57_2252 PF05746 DALR anticodon binding domain DM57_2252 PF02092 Glycyl-tRNA synthetase beta subunit DM57_2254 PF00795 Carbon-nitrogen hydrolase DM57_2255 PF03471 Transporter associated domain DM57_2255 PF00571 CBS domain DM57_2256 PF04752 ChaC-like protein DM57_2257 PF02130 Uncharacterized protein family UPF0054 DM57_2258 PF02562 PhoH-like protein DM57_2259 PF00919 Uncharacterized protein family UPF0004 DM57_2259 PF01938 TRAM domain DM57_2259 PF04055 Radical SAM superfamily DM57_2260 PF03466 LysR substrate binding domain DM57_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2261 PF07690 Major Facilitator Superfamily DM57_2262 PF01381 Helix-turn-helix DM57_2262 PF07883 Cupin domain DM57_2263 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DM57_2264 PF13419 Haloacid dehalogenase-like hydrolase DM57_2267 PF00733 Asparagine synthase DM57_2267 PF13537 Glutamine amidotransferase domain DM57_2268 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM57_2269 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM57_2271 PF00230 Major intrinsic protein DM57_2272 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DM57_2272 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DM57_2273 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DM57_2273 PF01266 FAD dependent oxidoreductase DM57_2276 PF00455 DeoR C terminal sensor domain DM57_2276 PF08220 DeoR-like helix-turn-helix domain DM57_2280 PF00271 Helicase conserved C-terminal domain DM57_2280 PF00270 DEAD/DEAH box helicase DM57_2281 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DM57_2281 PF00034 Cytochrome c DM57_2284 PF13378 Enolase C-terminal domain-like DM57_2284 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DM57_2287 PF00990 Diguanylate cyclase, GGDEF domain DM57_2287 PF00563 EAL domain DM57_2287 PF03707 Bacterial signalling protein N terminal repeat DM57_2288 PF00149 Calcineurin-like phosphoesterase DM57_2288 PF16656 Purple acid Phosphatase, N-terminal domain DM57_2289 PF00072 Response regulator receiver domain DM57_2289 PF00158 Sigma-54 interaction domain DM57_2289 PF02954 Bacterial regulatory protein, Fis family DM57_2291 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_2291 PF08447 PAS fold DM57_2292 PF01527 Transposase DM57_2297 PF15864 Protein glycosylation ligase DM57_2297 PF04932 O-Antigen ligase DM57_2297 PF11846 Virulence factor membrane-bound polymerase, C-terminal DM57_2298 PF07963 Prokaryotic N-terminal methylation motif DM57_2298 PF00114 Pilin (bacterial filament) DM57_2299 PF03741 Integral membrane protein TerC family DM57_2300 PF02629 CoA binding domain DM57_2300 PF00549 CoA-ligase DM57_2301 PF08442 ATP-grasp domain DM57_2301 PF00549 CoA-ligase DM57_2303 PF02631 RecX family DM57_2304 PF00154 recA bacterial DNA recombination protein DM57_2305 PF00072 Response regulator receiver domain DM57_2305 PF00486 Transcriptional regulatory protein, C terminal DM57_2306 PF08521 Two-component sensor kinase N-terminal DM57_2306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2306 PF00512 His Kinase A (phospho-acceptor) domain DM57_2307 PF00083 Sugar (and other) transporter DM57_2307 PF08946 Osmosensory transporter coiled coil DM57_2311 PF01527 Transposase DM57_2312 PF01967 MoaC family DM57_2313 PF01435 Peptidase family M48 DM57_2313 PF13181 Tetratricopeptide repeat DM57_2315 PF00561 alpha/beta hydrolase fold DM57_2317 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DM57_2319 PF01063 Amino-transferase class IV DM57_2322 PF00162 Phosphoglycerate kinase DM57_2323 PF00224 Pyruvate kinase, barrel domain DM57_2323 PF02887 Pyruvate kinase, alpha/beta domain DM57_2324 PF01116 Fructose-bisphosphate aldolase class-II DM57_2325 PF01259 SAICAR synthetase DM57_2326 PF00731 AIR carboxylase DM57_2327 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DM57_2327 PF02222 ATP-grasp domain DM57_2328 PF03481 Putative GTP-binding controlling metal-binding DM57_2328 PF01300 Telomere recombination DM57_2332 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DM57_2333 PF00486 Transcriptional regulatory protein, C terminal DM57_2333 PF00072 Response regulator receiver domain DM57_2334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2334 PF00512 His Kinase A (phospho-acceptor) domain DM57_2335 PF13180 PDZ domain DM57_2339 PF00440 Bacterial regulatory proteins, tetR family DM57_2339 PF08361 MAATS-type transcriptional repressor, C-terminal region DM57_234 PF07690 Major Facilitator Superfamily DM57_2340 PF00529 HlyD membrane-fusion protein of T1SS DM57_2340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_2341 PF00873 AcrB/AcrD/AcrF family DM57_2342 PF02321 Outer membrane efflux protein DM57_2347 PF01527 Transposase DM57_2349 PF12833 Helix-turn-helix domain DM57_2349 PF01965 DJ-1/PfpI family DM57_235 PF00294 pfkB family carbohydrate kinase DM57_2350 PF00107 Zinc-binding dehydrogenase DM57_2350 PF08240 Alcohol dehydrogenase GroES-like domain DM57_2351 PF00756 Putative esterase DM57_2352 PF00950 ABC 3 transport family DM57_2353 PF00005 ABC transporter DM57_2355 PF01475 Ferric uptake regulator family DM57_2357 PF00294 pfkB family carbohydrate kinase DM57_2358 PF08013 Tagatose 6 phosphate kinase DM57_2360 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2361 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2362 PF13419 Haloacid dehalogenase-like hydrolase DM57_2363 PF08402 TOBE domain DM57_2363 PF00005 ABC transporter DM57_2365 PF03466 LysR substrate binding domain DM57_2365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2366 PF00144 Beta-lactamase DM57_2368 PF04198 Putative sugar-binding domain DM57_2369 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DM57_2369 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DM57_2372 PF03466 LysR substrate binding domain DM57_2372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2373 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_2373 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_2373 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_2374 PF00171 Aldehyde dehydrogenase family DM57_2375 PF02558 Ketopantoate reductase PanE/ApbA DM57_2375 PF08546 Ketopantoate reductase PanE/ApbA C terminal DM57_2376 PF07690 Major Facilitator Superfamily DM57_2377 PF03301 Tryptophan 2,3-dioxygenase DM57_2378 PF00266 Aminotransferase class-V DM57_2379 PF04199 Putative cyclase DM57_238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_238 PF03466 LysR substrate binding domain DM57_2380 PF01613 Flavin reductase like domain DM57_2381 PF01037 Lrp/AsnC ligand binding domain DM57_2382 PF01625 Peptide methionine sulfoxide reductase DM57_2385 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DM57_2385 PF01243 Pyridoxamine 5'-phosphate oxidase DM57_2386 PF00899 ThiF family DM57_2388 PF02678 Pirin DM57_2388 PF05726 Pirin C-terminal cupin domain DM57_2389 PF00892 EamA-like transporter family DM57_239 PF03601 Conserved hypothetical protein 698 DM57_2390 PF11741 AMIN domain DM57_2390 PF01520 N-acetylmuramoyl-L-alanine amidase DM57_2391 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DM57_2392 PF08331 Domain of unknown function (DUF1730) DM57_2394 PF02899 Phage integrase, N-terminal SAM-like domain DM57_2394 PF00589 Phage integrase family DM57_2395 PF13193 AMP-binding enzyme C-terminal domain DM57_2395 PF00501 AMP-binding enzyme DM57_2396 PF04073 Aminoacyl-tRNA editing domain DM57_2397 PF02660 Glycerol-3-phosphate acyltransferase DM57_2398 PF04461 Protein of unknown function (DUF520) DM57_2399 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DM57_2399 PF01565 FAD binding domain DM57_240 PF00654 Voltage gated chloride channel DM57_2400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DM57_2400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DM57_2402 PF01649 Ribosomal protein S20 DM57_2403 PF03023 Lipid II flippase MurJ DM57_2404 PF13369 Transglutaminase-like superfamily DM57_2405 PF00106 short chain dehydrogenase DM57_2407 PF00303 Thymidylate synthase DM57_2408 PF00072 Response regulator receiver domain DM57_2408 PF02954 Bacterial regulatory protein, Fis family DM57_2408 PF00158 Sigma-54 interaction domain DM57_241 PF00440 Bacterial regulatory proteins, tetR family DM57_241 PF08361 MAATS-type transcriptional repressor, C-terminal region DM57_2412 PF00158 Sigma-54 interaction domain DM57_2412 PF02954 Bacterial regulatory protein, Fis family DM57_2412 PF00072 Response regulator receiver domain DM57_2413 PF00186 Dihydrofolate reductase DM57_2415 PF01523 Putative modulator of DNA gyrase DM57_2416 PF04751 Protein of unknown function (DUF615) DM57_2417 PF00994 Probable molybdopterin binding domain DM57_2418 PF00929 Exonuclease DM57_2419 PF01435 Peptidase family M48 DM57_242 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_2420 PF03193 RsgA GTPase DM57_2422 PF03186 CobD/Cbib protein DM57_2422 PF17113 Regulatory signalling modulator protein AmpE DM57_2423 PF00293 NUDIX domain DM57_2426 PF01245 Ribosomal protein L19 DM57_2427 PF01746 tRNA (Guanine-1)-methyltransferase DM57_2428 PF05239 PRC-barrel domain DM57_2428 PF01782 RimM N-terminal domain DM57_2429 PF00886 Ribosomal protein S16 DM57_243 PF00873 AcrB/AcrD/AcrF family DM57_2434 PF01037 Lrp/AsnC ligand binding domain DM57_2435 PF01266 FAD dependent oxidoreductase DM57_2438 PF01012 Electron transfer flavoprotein domain DM57_2438 PF00766 Electron transfer flavoprotein FAD-binding domain DM57_2439 PF01012 Electron transfer flavoprotein domain DM57_244 PF02321 Outer membrane efflux protein DM57_2440 PF03180 NLPA lipoprotein DM57_2441 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2442 PF09383 NIL domain DM57_2442 PF00005 ABC transporter DM57_2443 PF12146 Serine aminopeptidase, S33 DM57_2444 PF00850 Histone deacetylase domain DM57_2445 PF13406 Transglycosylase SLT domain DM57_2446 PF00291 Pyridoxal-phosphate dependent enzyme DM57_2448 PF01370 NAD dependent epimerase/dehydratase family DM57_245 PF13411 MerR HTH family regulatory protein DM57_245 PF07739 TipAS antibiotic-recognition domain DM57_2450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DM57_2450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DM57_2450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DM57_2451 PF18073 Rubredoxin metal binding domain DM57_2454 PF00216 Bacterial DNA-binding protein DM57_2455 PF00575 S1 RNA binding domain DM57_2456 PF02224 Cytidylate kinase DM57_2457 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DM57_2458 PF01842 ACT domain DM57_2458 PF01817 Chorismate mutase type II DM57_2458 PF00800 Prephenate dehydratase DM57_2459 PF00266 Aminotransferase class-V DM57_2461 PF03989 DNA gyrase C-terminal domain, beta-propeller DM57_2461 PF00521 DNA gyrase/topoisomerase IV, subunit A DM57_2462 PF00691 OmpA family DM57_2464 PF13419 Haloacid dehalogenase-like hydrolase DM57_2466 PF01527 Transposase DM57_2468 PF00398 Ribosomal RNA adenine dimethylase DM57_2470 PF12727 PBP superfamily domain DM57_2470 PF12728 Helix-turn-helix domain DM57_2472 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DM57_2472 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM57_2472 PF10531 SLBB domain DM57_2473 PF01568 Molydopterin dinucleotide binding domain DM57_2473 PF00384 Molybdopterin oxidoreductase DM57_2473 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM57_2473 PF00037 4Fe-4S binding domain DM57_2473 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DM57_2475 PF01494 FAD binding domain DM57_2477 PF07690 Major Facilitator Superfamily DM57_2478 PF07722 Peptidase C26 DM57_2479 PF01425 Amidase DM57_2480 PF02600 Disulfide bond formation protein DsbB DM57_2482 PF00962 Adenosine/AMP deaminase DM57_2483 PF00860 Permease family DM57_2484 PF01979 Amidohydrolase family DM57_2485 PF01169 Uncharacterized protein family UPF0016 DM57_2487 PF11940 Domain of unknown function (DUF3458) Ig-like fold DM57_2487 PF01433 Peptidase family M1 domain DM57_2487 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DM57_2488 PF08267 Cobalamin-independent synthase, N-terminal domain DM57_2488 PF01717 Cobalamin-independent synthase, Catalytic domain DM57_2489 PF03466 LysR substrate binding domain DM57_2489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_249 PF00710 Asparaginase, N-terminal DM57_249 PF17763 Glutaminase/Asparaginase C-terminal domain DM57_2490 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DM57_2498 PF07715 TonB-dependent Receptor Plug Domain DM57_2498 PF00593 TonB dependent receptor DM57_2504 PF01527 Transposase DM57_2505 PF13356 Arm DNA-binding domain DM57_2505 PF14659 Phage integrase, N-terminal SAM-like domain DM57_2505 PF00589 Phage integrase family DM57_2508 PF01527 Transposase DM57_2509 PF00849 RNA pseudouridylate synthase DM57_2510 PF00180 Isocitrate/isopropylmalate dehydrogenase DM57_2511 PF07731 Multicopper oxidase DM57_2511 PF07732 Multicopper oxidase DM57_2517 PF03061 Thioesterase superfamily DM57_2518 PF00206 Lyase DM57_2518 PF10415 Fumarase C C-terminus DM57_2520 PF01527 Transposase DM57_2521 PF01554 MatE DM57_2525 PF05981 CreA protein DM57_2528 PF11953 Domain of unknown function (DUF3470) DM57_2528 PF00037 4Fe-4S binding domain DM57_2529 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DM57_2529 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DM57_253 PF00534 Glycosyl transferases group 1 DM57_253 PF13439 Glycosyltransferase Family 4 DM57_2532 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM57_2532 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM57_2533 PF02646 RmuC family DM57_2536 PF03453 MoeA N-terminal region (domain I and II) DM57_2536 PF03454 MoeA C-terminal region (domain IV) DM57_2536 PF00994 Probable molybdopterin binding domain DM57_2537 PF12804 MobA-like NTP transferase domain DM57_2538 PF06463 Molybdenum Cofactor Synthesis C DM57_2538 PF04055 Radical SAM superfamily DM57_2539 PF10150 Ribonuclease E/G family DM57_2539 PF00575 S1 RNA binding domain DM57_2539 PF12111 Polyribonucleotide phosphorylase C terminal DM57_254 PF02463 RecF/RecN/SMC N terminal domain DM57_2540 PF00849 RNA pseudouridylate synthase DM57_2540 PF01479 S4 domain DM57_2543 PF01343 Peptidase family S49 DM57_2544 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_2545 PF02545 Maf-like protein DM57_2546 PF02620 Large ribosomal RNA subunit accumulation protein YceD DM57_2547 PF01783 Ribosomal L32p protein family DM57_2548 PF02504 Fatty acid synthesis protein DM57_2549 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DM57_2549 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DM57_2550 PF00698 Acyl transferase domain DM57_2552 PF00550 Phosphopantetheine attachment site DM57_2553 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_2553 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_2555 PF08281 Sigma-70, region 4 DM57_2555 PF04542 Sigma-70 region 2 DM57_2557 PF17188 MucB/RseB C-terminal domain DM57_2557 PF03888 MucB/RseB N-terminal domain DM57_2558 PF13180 PDZ domain DM57_2560 PF03144 Elongation factor Tu domain 2 DM57_2560 PF06421 GTP-binding protein LepA C-terminus DM57_2560 PF00679 Elongation factor G C-terminus DM57_2560 PF00009 Elongation factor Tu GTP binding domain DM57_2561 PF10502 Signal peptidase, peptidase S26 DM57_2562 PF14622 Ribonuclease-III-like DM57_2562 PF00035 Double-stranded RNA binding motif DM57_2563 PF01926 50S ribosome-binding GTPase DM57_2563 PF07650 KH domain DM57_2564 PF11967 Recombination protein O N terminal DM57_2564 PF02565 Recombination protein O C terminal DM57_2565 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DM57_2566 PF01648 4'-phosphopantetheinyl transferase superfamily DM57_2567 PF00933 Glycosyl hydrolase family 3 N terminal domain DM57_2568 PF00158 Sigma-54 interaction domain DM57_2568 PF02954 Bacterial regulatory protein, Fis family DM57_2568 PF00072 Response regulator receiver domain DM57_2569 PF09285 Elongation factor P, C-terminal DM57_2569 PF08207 Elongation factor P (EF-P) KOW-like domain DM57_2569 PF01132 Elongation factor P (EF-P) OB domain DM57_2571 PF08459 UvrC Helix-hairpin-helix N-terminal DM57_2571 PF02151 UvrB/uvrC motif DM57_2571 PF01541 GIY-YIG catalytic domain DM57_2572 PF01066 CDP-alcohol phosphatidyltransferase DM57_2576 PF13185 GAF domain DM57_2577 PF03466 LysR substrate binding domain DM57_2577 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2578 PF02678 Pirin DM57_2578 PF05726 Pirin C-terminal cupin domain DM57_2579 PF13673 Acetyltransferase (GNAT) domain DM57_258 PF01026 TatD related DNase DM57_2582 PF02630 SCO1/SenC DM57_2583 PF02358 Trehalose-phosphatase DM57_2584 PF00982 Glycosyltransferase family 20 DM57_2585 PF00005 ABC transporter DM57_2585 PF00664 ABC transporter transmembrane region DM57_2586 PF13439 Glycosyltransferase Family 4 DM57_2586 PF00534 Glycosyl transferases group 1 DM57_2588 PF01266 FAD dependent oxidoreductase DM57_2589 PF13458 Periplasmic binding protein DM57_259 PF00583 Acetyltransferase (GNAT) family DM57_2592 PF01527 Transposase DM57_2594 PF04794 YdjC-like protein DM57_2597 PF00296 Luciferase-like monooxygenase DM57_2599 PF08543 Phosphomethylpyrimidine kinase DM57_260 PF09115 DNA polymerase III, delta subunit, C terminal DM57_2600 PF04185 Phosphoesterase family DM57_2600 PF05506 Domain of unknown function (DUF756) DM57_2603 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2604 PF00005 ABC transporter DM57_2605 PF12833 Helix-turn-helix domain DM57_2606 PF00202 Aminotransferase class-III DM57_2607 PF04958 Arginine N-succinyltransferase beta subunit DM57_2608 PF04958 Arginine N-succinyltransferase beta subunit DM57_2609 PF00171 Aldehyde dehydrogenase family DM57_261 PF02223 Thymidylate kinase DM57_2610 PF04996 Succinylarginine dihydrolase DM57_2611 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DM57_2613 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_2615 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DM57_2619 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DM57_2619 PF06481 COX Aromatic Rich Motif DM57_262 PF02618 YceG-like family DM57_2621 PF02082 Transcriptional regulator DM57_2623 PF01883 Iron-sulfur cluster assembly protein DM57_2624 PF01592 NifU-like N terminal domain DM57_2625 PF00266 Aminotransferase class-V DM57_2627 PF00005 ABC transporter DM57_263 PF01571 Aminomethyltransferase folate-binding domain DM57_2630 PF00672 HAMP domain DM57_2630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_2630 PF02203 Tar ligand binding domain homologue DM57_2631 PF04055 Radical SAM superfamily DM57_2631 PF06969 HemN C-terminal domain DM57_2633 PF00520 Ion transport protein DM57_2633 PF00027 Cyclic nucleotide-binding domain DM57_2644 PF01883 Iron-sulfur cluster assembly protein DM57_2645 PF00115 Cytochrome C and Quinol oxidase polypeptide I DM57_2646 PF00487 Fatty acid desaturase DM57_2647 PF03441 FAD binding domain of DNA photolyase DM57_2647 PF00875 DNA photolyase DM57_2649 PF03472 Autoinducer binding domain DM57_2649 PF00196 Bacterial regulatory proteins, luxR family DM57_265 PF13673 Acetyltransferase (GNAT) domain DM57_2652 PF00221 Aromatic amino acid lyase DM57_2653 PF00392 Bacterial regulatory proteins, gntR family DM57_2653 PF07702 UTRA domain DM57_2654 PF17391 Urocanase N-terminal domain DM57_2654 PF01175 Urocanase Rossmann-like domain DM57_2654 PF17392 Urocanase C-terminal domain DM57_2656 PF01979 Amidohydrolase family DM57_2657 PF01979 Amidohydrolase family DM57_2659 PF07722 Peptidase C26 DM57_266 PF07859 alpha/beta hydrolase fold DM57_2660 PF00120 Glutamine synthetase, catalytic domain DM57_2665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2665 PF03466 LysR substrate binding domain DM57_2668 PF01507 Phosphoadenosine phosphosulfate reductase family DM57_2669 PF01507 Phosphoadenosine phosphosulfate reductase family DM57_267 PF00107 Zinc-binding dehydrogenase DM57_267 PF16884 N-terminal domain of oxidoreductase DM57_2670 PF00009 Elongation factor Tu GTP binding domain DM57_2671 PF14824 Sirohaem biosynthesis protein central DM57_2671 PF10414 Sirohaem synthase dimerisation region DM57_2671 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_2674 PF03739 Lipopolysaccharide export system permease LptF/LptG DM57_2675 PF00883 Cytosol aminopeptidase family, catalytic domain DM57_2675 PF02789 Cytosol aminopeptidase family, N-terminal domain DM57_2676 PF04364 DNA polymerase III chi subunit, HolC DM57_2678 PF00034 Cytochrome c DM57_2680 PF00920 Dehydratase family DM57_2681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2681 PF03466 LysR substrate binding domain DM57_2682 PF01790 Prolipoprotein diacylglyceryl transferase DM57_2685 PF05164 Cell division protein ZapA DM57_2687 PF00593 TonB dependent receptor DM57_2687 PF07715 TonB-dependent Receptor Plug Domain DM57_2688 PF01032 FecCD transport family DM57_2689 PF00005 ABC transporter DM57_2690 PF02277 Phosphoribosyltransferase DM57_2691 PF02654 Cobalamin-5-phosphate synthase DM57_2694 PF01497 Periplasmic binding protein DM57_2695 PF00155 Aminotransferase class I and II DM57_2696 PF03186 CobD/Cbib protein DM57_2696 PF17113 Regulatory signalling modulator protein AmpE DM57_2697 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DM57_2698 PF07685 CobB/CobQ-like glutamine amidotransferase domain DM57_2698 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM57_2699 PF07681 DoxX DM57_27 PF13407 Periplasmic binding protein domain DM57_2700 PF10609 NUBPL iron-transfer P-loop NTPase DM57_2701 PF02261 Aspartate decarboxylase DM57_2702 PF02569 Pantoate-beta-alanine ligase DM57_2703 PF02616 Segregation and condensation protein ScpA DM57_2705 PF01103 Surface antigen DM57_2705 PF07244 Surface antigen variable number repeat DM57_2705 PF17243 POTRA domain TamA domain 1 DM57_2706 PF04357 TamB, inner membrane protein subunit of TAM complex DM57_2708 PF16864 Dimerisation domain DM57_2708 PF00891 O-methyltransferase domain DM57_2709 PF01588 Putative tRNA binding domain DM57_2709 PF09334 tRNA synthetases class I (M) DM57_271 PF02803 Thiolase, C-terminal domain DM57_271 PF00108 Thiolase, N-terminal domain DM57_2710 PF00691 OmpA family DM57_2710 PF05736 OprF membrane domain DM57_2711 PF10609 NUBPL iron-transfer P-loop NTPase DM57_2713 PF00692 dUTPase DM57_2714 PF01276 Orn/Lys/Arg decarboxylase, major domain DM57_2714 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DM57_2714 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DM57_2716 PF13419 Haloacid dehalogenase-like hydrolase DM57_2717 PF00206 Lyase DM57_2717 PF14698 Argininosuccinate lyase C-terminal DM57_272 PF00857 Isochorismatase family DM57_2723 PF08241 Methyltransferase domain DM57_2725 PF00311 Phosphoenolpyruvate carboxylase DM57_2726 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DM57_2726 PF03900 Porphobilinogen deaminase, C-terminal domain DM57_2727 PF02602 Uroporphyrinogen-III synthase HemD DM57_2729 PF07690 Major Facilitator Superfamily DM57_273 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM57_273 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM57_273 PF00378 Enoyl-CoA hydratase/isomerase DM57_2731 PF00171 Aldehyde dehydrogenase family DM57_2732 PF00719 Inorganic pyrophosphatase DM57_2735 PF02540 NAD synthase DM57_2735 PF00795 Carbon-nitrogen hydrolase DM57_2736 PF00543 Nitrogen regulatory protein P-II DM57_2737 PF13609 Gram-negative porin DM57_2738 PF00005 ABC transporter DM57_2739 PF00528 Binding-protein-dependent transport system inner membrane component DM57_274 PF13193 AMP-binding enzyme C-terminal domain DM57_274 PF00501 AMP-binding enzyme DM57_2740 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2741 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_2745 PF00486 Transcriptional regulatory protein, C terminal DM57_2745 PF00072 Response regulator receiver domain DM57_2746 PF00672 HAMP domain DM57_2746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2746 PF00512 His Kinase A (phospho-acceptor) domain DM57_2748 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2749 PF00005 ABC transporter DM57_275 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DM57_2751 PF01527 Transposase DM57_2754 PF00768 D-alanyl-D-alanine carboxypeptidase DM57_2755 PF03974 Ecotin DM57_2759 PF01161 Phosphatidylethanolamine-binding protein DM57_276 PF01641 SelR domain DM57_2760 PF07690 Major Facilitator Superfamily DM57_2763 PF00982 Glycosyltransferase family 20 DM57_2767 PF13667 ThiC-associated domain DM57_2767 PF01964 Radical SAM ThiC family DM57_277 PF04279 Intracellular septation protein A DM57_2770 PF01292 Prokaryotic cytochrome b561 DM57_2771 PF00174 Oxidoreductase molybdopterin binding domain DM57_2772 PF00892 EamA-like transporter family DM57_2773 PF07690 Major Facilitator Superfamily DM57_2779 PF00528 Binding-protein-dependent transport system inner membrane component DM57_278 PF01722 BolA-like protein DM57_2781 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2783 PF00356 Bacterial regulatory proteins, lacI family DM57_2787 PF00072 Response regulator receiver domain DM57_2787 PF00990 Diguanylate cyclase, GGDEF domain DM57_2791 PF00392 Bacterial regulatory proteins, gntR family DM57_2791 PF00155 Aminotransferase class I and II DM57_2792 PF01037 Lrp/AsnC ligand binding domain DM57_2793 PF01380 SIS domain DM57_28 PF00005 ABC transporter DM57_2805 PF00155 Aminotransferase class I and II DM57_2805 PF00392 Bacterial regulatory proteins, gntR family DM57_2806 PF00011 Hsp20/alpha crystallin family DM57_2809 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DM57_2809 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DM57_281 PF02769 AIR synthase related protein, C-terminal domain DM57_281 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DM57_281 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DM57_2810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DM57_2810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DM57_2811 PF03466 LysR substrate binding domain DM57_2811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2815 PF16957 Malonate decarboxylase, alpha subunit, transporter DM57_2816 PF06857 Malonate decarboxylase delta subunit (MdcD) DM57_2817 PF01039 Carboxyl transferase domain DM57_2819 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DM57_282 PF01266 FAD dependent oxidoreductase DM57_2820 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DM57_2822 PF13091 PLD-like domain DM57_2826 PF01527 Transposase DM57_2828 PF08946 Osmosensory transporter coiled coil DM57_2828 PF00083 Sugar (and other) transporter DM57_2829 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DM57_283 PF01256 Carbohydrate kinase DM57_2830 PF00929 Exonuclease DM57_2831 PF00075 RNase H DM57_2832 PF08241 Methyltransferase domain DM57_2833 PF00753 Metallo-beta-lactamase superfamily DM57_2833 PF16123 Hydroxyacylglutathione hydrolase C-terminus DM57_2834 PF01464 Transglycosylase SLT domain DM57_2834 PF01476 LysM domain DM57_2837 PF12833 Helix-turn-helix domain DM57_2837 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DM57_2838 PF00117 Glutamine amidotransferase class-I DM57_2838 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DM57_2839 PF01810 LysE type translocator DM57_284 PF00342 Phosphoglucose isomerase DM57_2840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DM57_2840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DM57_2840 PF02142 MGS-like domain DM57_2841 PF03449 Transcription elongation factor, N-terminal DM57_2841 PF01272 Transcription elongation factor, GreA/GreB, C-term DM57_2843 PF01985 CRS1 / YhbY (CRM) domain DM57_2844 PF01728 FtsJ-like methyltransferase DM57_2845 PF00004 ATPase family associated with various cellular activities (AAA) DM57_2845 PF01434 Peptidase family M41 DM57_2845 PF06480 FtsH Extracellular DM57_2845 PF17862 AAA+ lid domain DM57_2846 PF00809 Pterin binding enzyme DM57_2847 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DM57_2847 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DM57_2847 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DM57_2847 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DM57_2848 PF12849 PBP superfamily domain DM57_2849 PF00528 Binding-protein-dependent transport system inner membrane component DM57_285 PF00005 ABC transporter DM57_2850 PF00528 Binding-protein-dependent transport system inner membrane component DM57_2851 PF00005 ABC transporter DM57_2852 PF01895 PhoU domain DM57_2853 PF00486 Transcriptional regulatory protein, C terminal DM57_2853 PF00072 Response regulator receiver domain DM57_2854 PF00989 PAS fold DM57_2854 PF11808 Phosphate regulon sensor protein PhoR DM57_2854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2854 PF00512 His Kinase A (phospho-acceptor) domain DM57_2855 PF13089 Polyphosphate kinase N-terminal domain DM57_2855 PF17941 Polyphosphate kinase C-terminal domain 1 DM57_2855 PF02503 Polyphosphate kinase middle domain DM57_2855 PF13090 Polyphosphate kinase C-terminal domain 2 DM57_2856 PF02541 Ppx/GppA phosphatase family DM57_286 PF13472 GDSL-like Lipase/Acylhydrolase family DM57_2870 PF01554 MatE DM57_2872 PF00501 AMP-binding enzyme DM57_2872 PF13193 AMP-binding enzyme C-terminal domain DM57_2874 PF01476 LysM domain DM57_2874 PF01551 Peptidase family M23 DM57_2882 PF04072 Leucine carboxyl methyltransferase DM57_2883 PF00392 Bacterial regulatory proteins, gntR family DM57_2883 PF00155 Aminotransferase class I and II DM57_2886 PF00128 Alpha amylase, catalytic domain DM57_2887 PF02446 4-alpha-glucanotransferase DM57_2888 PF00128 Alpha amylase, catalytic domain DM57_2888 PF11941 Domain of unknown function (DUF3459) DM57_2889 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DM57_2889 PF00128 Alpha amylase, catalytic domain DM57_2892 PF00128 Alpha amylase, catalytic domain DM57_2892 PF16657 Maltogenic Amylase, C-terminal domain DM57_2893 PF00128 Alpha amylase, catalytic domain DM57_2893 PF11896 Domain of unknown function (DUF3416) DM57_2894 PF10503 Esterase PHB depolymerase DM57_2898 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2898 PF03466 LysR substrate binding domain DM57_2899 PF00486 Transcriptional regulatory protein, C terminal DM57_2899 PF00072 Response regulator receiver domain DM57_29 PF02653 Branched-chain amino acid transport system / permease component DM57_2901 PF05666 Fels-1 Prophage Protein-like DM57_2903 PF00072 Response regulator receiver domain DM57_2903 PF00486 Transcriptional regulatory protein, C terminal DM57_2904 PF03895 YadA-like membrane anchor domain DM57_2904 PF05662 Coiled stalk of trimeric autotransporter adhesin DM57_2904 PF05658 Head domain of trimeric autotransporter adhesin DM57_2905 PF01389 OmpA-like transmembrane domain DM57_2905 PF00691 OmpA family DM57_2917 PF16671 Actin cross-linking domain DM57_2917 PF04717 Type VI secretion system, phage-baseplate injector DM57_2922 PF01566 Natural resistance-associated macrophage protein DM57_2925 PF04909 Amidohydrolase DM57_2927 PF03466 LysR substrate binding domain DM57_2927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2934 PF00072 Response regulator receiver domain DM57_2934 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DM57_2934 PF01627 Hpt domain DM57_2934 PF00512 His Kinase A (phospho-acceptor) domain DM57_2934 PF00672 HAMP domain DM57_2934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2935 PF00196 Bacterial regulatory proteins, luxR family DM57_2935 PF00072 Response regulator receiver domain DM57_2936 PF02321 Outer membrane efflux protein DM57_2937 PF07690 Major Facilitator Superfamily DM57_2938 PF00529 HlyD membrane-fusion protein of T1SS DM57_2938 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_2939 PF12241 Trans-2-enoyl-CoA reductase catalytic region DM57_2939 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DM57_2939 PF07055 Enoyl reductase FAD binding domain DM57_294 PF05362 Lon protease (S16) C-terminal proteolytic domain DM57_294 PF00004 ATPase family associated with various cellular activities (AAA) DM57_294 PF02190 ATP-dependent protease La (LON) substrate-binding domain DM57_2940 PF05506 Domain of unknown function (DUF756) DM57_2940 PF04185 Phosphoesterase family DM57_2941 PF03150 Di-haem cytochrome c peroxidase DM57_2941 PF00034 Cytochrome c DM57_2946 PF00293 NUDIX domain DM57_2947 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DM57_2947 PF00749 tRNA synthetases class I (E and Q), catalytic domain DM57_2949 PF02515 CoA-transferase family III DM57_295 PF06689 ClpX C4-type zinc finger DM57_295 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_295 PF07724 AAA domain (Cdc48 subfamily) DM57_2950 PF01411 tRNA synthetases class II (A) DM57_2950 PF02272 DHHA1 domain DM57_2950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM57_2951 PF03466 LysR substrate binding domain DM57_2951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2953 PF01527 Transposase DM57_296 PF00574 Clp protease DM57_2960 PF01906 Putative heavy-metal-binding DM57_2961 PF00465 Iron-containing alcohol dehydrogenase DM57_2962 PF03061 Thioesterase superfamily DM57_2963 PF02653 Branched-chain amino acid transport system / permease component DM57_2964 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM57_2964 PF00005 ABC transporter DM57_2965 PF00005 ABC transporter DM57_2966 PF04962 KduI/IolB family DM57_2967 PF01261 Xylose isomerase-like TIM barrel DM57_2968 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_2968 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_2968 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_2969 PF00294 pfkB family carbohydrate kinase DM57_297 PF05697 Bacterial trigger factor protein (TF) DM57_297 PF05698 Bacterial trigger factor protein (TF) C-terminus DM57_297 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DM57_2970 PF00005 ABC transporter DM57_2971 PF02653 Branched-chain amino acid transport system / permease component DM57_2973 PF01418 Helix-turn-helix domain, rpiR family DM57_2973 PF01380 SIS domain DM57_2974 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM57_2974 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM57_2975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM57_2975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM57_2976 PF01206 Sulfurtransferase TusA DM57_2978 PF00072 Response regulator receiver domain DM57_2978 PF00486 Transcriptional regulatory protein, C terminal DM57_298 PF02595 Glycerate kinase family DM57_2980 PF00672 HAMP domain DM57_2980 PF14827 Double sensory domain of two-component sensor kinase DM57_2980 PF00512 His Kinase A (phospho-acceptor) domain DM57_2980 PF13426 PAS domain DM57_2980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_2982 PF00483 Nucleotidyl transferase DM57_2983 PF08264 Anticodon-binding domain of tRNA DM57_2983 PF00133 tRNA synthetases class I (I, L, M and V) DM57_2983 PF10458 Valyl tRNA synthetase tRNA binding arm DM57_2984 PF13361 UvrD-like helicase C-terminal domain DM57_2984 PF00580 UvrD/REP helicase N-terminal domain DM57_2985 PF01048 Phosphorylase superfamily DM57_2986 PF07690 Major Facilitator Superfamily DM57_2987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_2987 PF02203 Tar ligand binding domain homologue DM57_2987 PF00672 HAMP domain DM57_2988 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DM57_299 PF01047 MarR family DM57_2990 PF04632 Fusaric acid resistance protein family DM57_2991 PF02321 Outer membrane efflux protein DM57_2992 PF03466 LysR substrate binding domain DM57_2992 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_2995 PF02913 FAD linked oxidases, C-terminal domain DM57_2995 PF01565 FAD binding domain DM57_2997 PF03358 NADPH-dependent FMN reductase DM57_2998 PF03631 Virulence factor BrkB DM57_30 PF00107 Zinc-binding dehydrogenase DM57_30 PF08240 Alcohol dehydrogenase GroES-like domain DM57_300 PF08546 Ketopantoate reductase PanE/ApbA C terminal DM57_300 PF02558 Ketopantoate reductase PanE/ApbA DM57_3001 PF07690 Major Facilitator Superfamily DM57_3002 PF01264 Chorismate synthase DM57_3005 PF01527 Transposase DM57_3008 PF08281 Sigma-70, region 4 DM57_3008 PF04542 Sigma-70 region 2 DM57_3010 PF01250 Ribosomal protein S6 DM57_3012 PF01084 Ribosomal protein S18 DM57_3013 PF01281 Ribosomal protein L9, N-terminal domain DM57_3013 PF03948 Ribosomal protein L9, C-terminal domain DM57_3014 PF00772 DnaB-like helicase N terminal domain DM57_3014 PF03796 DnaB-like helicase C terminal domain DM57_3016 PF01384 Phosphate transporter family DM57_3017 PF00877 NlpC/P60 family DM57_3018 PF02562 PhoH-like protein DM57_3018 PF13638 PIN domain DM57_3019 PF00578 AhpC/TSA family DM57_302 PF00267 Gram-negative porin DM57_3020 PF01522 Polysaccharide deacetylase DM57_3022 PF00551 Formyl transferase DM57_3022 PF02911 Formyl transferase, C-terminal domain DM57_3022 PF01370 NAD dependent epimerase/dehydratase family DM57_3023 PF00535 Glycosyl transferase family 2 DM57_3024 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DM57_3026 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DM57_3029 PF01842 ACT domain DM57_3029 PF00742 Homoserine dehydrogenase DM57_3029 PF03447 Homoserine dehydrogenase, NAD binding domain DM57_3030 PF00291 Pyridoxal-phosphate dependent enzyme DM57_3030 PF14821 Threonine synthase N terminus DM57_3031 PF03453 MoeA N-terminal region (domain I and II) DM57_3031 PF03454 MoeA C-terminal region (domain IV) DM57_3031 PF00994 Probable molybdopterin binding domain DM57_3032 PF02597 ThiS family DM57_3033 PF02391 MoaE protein DM57_3034 PF01152 Bacterial-like globin DM57_3035 PF02082 Transcriptional regulator DM57_3036 PF00004 ATPase family associated with various cellular activities (AAA) DM57_3036 PF07724 AAA domain (Cdc48 subfamily) DM57_3036 PF17871 AAA lid domain DM57_3036 PF02861 Clp amino terminal domain, pathogenicity island component DM57_3036 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_304 PF00850 Histone deacetylase domain DM57_3041 PF01554 MatE DM57_3043 PF01197 Ribosomal protein L31 DM57_3044 PF06167 Glucose-regulated metallo-peptidase M90 DM57_3045 PF07690 Major Facilitator Superfamily DM57_3046 PF13411 MerR HTH family regulatory protein DM57_3047 PF07497 Rho termination factor, RNA-binding domain DM57_3047 PF07498 Rho termination factor, N-terminal domain DM57_3047 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DM57_3048 PF00085 Thioredoxin DM57_3049 PF12170 DNA polymerase III tau subunit V interacting with alpha DM57_3049 PF12169 DNA polymerase III subunits gamma and tau domain III DM57_3049 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DM57_3050 PF02575 YbaB/EbfC DNA-binding family DM57_3051 PF02132 RecR protein DM57_3051 PF13662 Toprim domain DM57_3052 PF02515 CoA-transferase family III DM57_3053 PF01975 Survival protein SurE DM57_3055 PF01476 LysM domain DM57_3055 PF01551 Peptidase family M23 DM57_3056 PF00140 Sigma-70 factor, region 1.2 DM57_3056 PF04545 Sigma-70, region 4 DM57_3056 PF04539 Sigma-70 region 3 DM57_3056 PF04542 Sigma-70 region 2 DM57_3059 PF05958 tRNA (Uracil-5-)-methyltransferase DM57_3060 PF01027 Inhibitor of apoptosis-promoting Bax1 DM57_3061 PF00334 Nucleoside diphosphate kinase DM57_3062 PF04055 Radical SAM superfamily DM57_3064 PF04551 GcpE protein DM57_3065 PF13393 Histidyl-tRNA synthetase DM57_3065 PF03129 Anticodon binding domain DM57_3066 PF09976 Tetratricopeptide repeat-like domain DM57_3067 PF13360 PQQ-like domain DM57_3068 PF01926 50S ribosome-binding GTPase DM57_3068 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DM57_3069 PF17209 Hfq protein DM57_3070 PF13167 GTP-binding GTPase N-terminal DM57_3070 PF01926 50S ribosome-binding GTPase DM57_3070 PF16360 GTP-binding GTPase Middle Region DM57_3071 PF12221 Bacterial membrane protein N terminal DM57_3071 PF01145 SPFH domain / Band 7 family DM57_3072 PF01145 SPFH domain / Band 7 family DM57_3074 PF13393 Histidyl-tRNA synthetase DM57_3075 PF00709 Adenylosuccinate synthetase DM57_3076 PF00156 Phosphoribosyl transferase domain DM57_3077 PF02705 K+ potassium transporter DM57_3078 PF09371 Tex-like protein N-terminal domain DM57_3078 PF16921 Tex protein YqgF-like domain DM57_3078 PF00575 S1 RNA binding domain DM57_3078 PF17674 HHH domain DM57_3081 PF04851 Type III restriction enzyme, res subunit DM57_3081 PF13307 Helicase C-terminal domain DM57_3082 PF13525 Outer membrane lipoprotein DM57_3083 PF01479 S4 domain DM57_3083 PF00849 RNA pseudouridylate synthase DM57_3085 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DM57_3086 PF00108 Thiolase, N-terminal domain DM57_3086 PF02803 Thiolase, C-terminal domain DM57_3087 PF00106 short chain dehydrogenase DM57_3088 PF07879 PHB/PHA accumulation regulator DNA-binding domain DM57_3088 PF05233 PHB accumulation regulatory domain DM57_3089 PF00919 Uncharacterized protein family UPF0004 DM57_3089 PF18693 TRAM domain DM57_3089 PF04055 Radical SAM superfamily DM57_3090 PF00294 pfkB family carbohydrate kinase DM57_3091 PF02803 Thiolase, C-terminal domain DM57_3091 PF00108 Thiolase, N-terminal domain DM57_3093 PF01053 Cys/Met metabolism PLP-dependent enzyme DM57_3096 PF03649 Uncharacterised protein family (UPF0014) DM57_3097 PF00005 ABC transporter DM57_3098 PF05170 AsmA family DM57_3099 PF00005 ABC transporter DM57_3099 PF12848 ABC transporter DM57_31 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DM57_31 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DM57_3101 PF00171 Aldehyde dehydrogenase family DM57_3102 PF03060 Nitronate monooxygenase DM57_3103 PF03922 OmpW family DM57_3105 PF01566 Natural resistance-associated macrophage protein DM57_3106 PF13416 Bacterial extracellular solute-binding protein DM57_3107 PF00005 ABC transporter DM57_3107 PF08402 TOBE domain DM57_3108 PF00528 Binding-protein-dependent transport system inner membrane component DM57_3109 PF00528 Binding-protein-dependent transport system inner membrane component DM57_3116 PF00263 Bacterial type II and III secretion system protein DM57_3116 PF04972 BON domain DM57_3116 PF13629 Pilus formation protein N terminal region DM57_3124 PF02954 Bacterial regulatory protein, Fis family DM57_3124 PF00158 Sigma-54 interaction domain DM57_3124 PF00072 Response regulator receiver domain DM57_3126 PF17209 Hfq protein DM57_3129 PF00501 AMP-binding enzyme DM57_3129 PF13193 AMP-binding enzyme C-terminal domain DM57_313 PF00486 Transcriptional regulatory protein, C terminal DM57_313 PF00072 Response regulator receiver domain DM57_3130 PF00440 Bacterial regulatory proteins, tetR family DM57_3131 PF07690 Major Facilitator Superfamily DM57_3132 PF13673 Acetyltransferase (GNAT) domain DM57_3132 PF13302 Acetyltransferase (GNAT) domain DM57_3132 PF03352 Methyladenine glycosylase DM57_3132 PF00117 Glutamine amidotransferase class-I DM57_3132 PF00958 GMP synthase C terminal domain DM57_3134 PF01740 STAS domain DM57_3134 PF00916 Sulfate permease family DM57_3136 PF04185 Phosphoesterase family DM57_3137 PF02203 Tar ligand binding domain homologue DM57_3137 PF00672 HAMP domain DM57_3137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_314 PF00512 His Kinase A (phospho-acceptor) domain DM57_314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_314 PF00672 HAMP domain DM57_3141 PF17876 Cold shock domain DM57_3141 PF08461 Ribonuclease R winged-helix domain DM57_3141 PF08206 Ribonuclease B OB domain DM57_3141 PF00773 RNB domain DM57_3141 PF00575 S1 RNA binding domain DM57_3142 PF00588 SpoU rRNA Methylase family DM57_3142 PF08032 RNA 2'-O ribose methyltransferase substrate binding DM57_3143 PF01510 N-acetylmuramoyl-L-alanine amidase DM57_3144 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DM57_3145 PF07729 FCD domain DM57_3145 PF00392 Bacterial regulatory proteins, gntR family DM57_3146 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DM57_3146 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DM57_3148 PF01527 Transposase DM57_315 PF00578 AhpC/TSA family DM57_3151 PF01180 Dihydroorotate dehydrogenase DM57_3152 PF04376 Arginine-tRNA-protein transferase, N terminus DM57_3152 PF04377 Arginine-tRNA-protein transferase, C terminus DM57_3154 PF00293 NUDIX domain DM57_3154 PF09297 NADH pyrophosphatase zinc ribbon domain DM57_3156 PF03928 Haem-degrading DM57_3157 PF00893 Small Multidrug Resistance protein DM57_3158 PF00378 Enoyl-CoA hydratase/isomerase DM57_316 PF02627 Carboxymuconolactone decarboxylase family DM57_3161 PF00296 Luciferase-like monooxygenase DM57_3162 PF00528 Binding-protein-dependent transport system inner membrane component DM57_3163 PF00005 ABC transporter DM57_3164 PF03459 TOBE domain DM57_3169 PF01527 Transposase DM57_317 PF02542 YgbB family DM57_3172 PF01207 Dihydrouridine synthase (Dus) DM57_3173 PF00375 Sodium:dicarboxylate symporter family DM57_3174 PF01638 HxlR-like helix-turn-helix DM57_3176 PF00248 Aldo/keto reductase family DM57_3177 PF03773 Predicted permease DM57_3179 PF01061 ABC-2 type transporter DM57_318 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DM57_3181 PF01527 Transposase DM57_3186 PF00717 Peptidase S24-like DM57_3186 PF01726 LexA DNA binding domain DM57_3188 PF00528 Binding-protein-dependent transport system inner membrane component DM57_3189 PF00528 Binding-protein-dependent transport system inner membrane component DM57_319 PF00270 DEAD/DEAH box helicase DM57_319 PF17757 UvrB interaction domain DM57_319 PF03461 TRCF domain DM57_319 PF00271 Helicase conserved C-terminal domain DM57_319 PF02559 CarD-like/TRCF domain DM57_3190 PF12857 TOBE-like domain DM57_3190 PF00005 ABC transporter DM57_3191 PF03466 LysR substrate binding domain DM57_3191 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_3193 PF01527 Transposase DM57_3195 PF06798 PrkA serine protein kinase C-terminal domain DM57_3195 PF08298 PrkA AAA domain DM57_3196 PF04285 Protein of unknown function (DUF444) DM57_3197 PF04293 SpoVR like protein DM57_3198 PF00083 Sugar (and other) transporter DM57_3201 PF00005 ABC transporter DM57_3202 PF00528 Binding-protein-dependent transport system inner membrane component DM57_3206 PF13629 Pilus formation protein N terminal region DM57_3206 PF00263 Bacterial type II and III secretion system protein DM57_3206 PF04972 BON domain DM57_321 PF01546 Peptidase family M20/M25/M40 DM57_321 PF07687 Peptidase dimerisation domain DM57_322 PF00291 Pyridoxal-phosphate dependent enzyme DM57_324 PF00912 Transglycosylase DM57_324 PF17092 Penicillin-binding protein OB-like domain DM57_324 PF00905 Penicillin binding protein transpeptidase domain DM57_330 PF01741 Large-conductance mechanosensitive channel, MscL DM57_334 PF04115 Ureidoglycolate lyase DM57_336 PF03561 Allantoicase repeat DM57_337 PF01014 Uricase DM57_337 PF09349 OHCU decarboxylase DM57_339 PF01177 Asp/Glu/Hydantoin racemase DM57_340 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DM57_341 PF07729 FCD domain DM57_341 PF00392 Bacterial regulatory proteins, gntR family DM57_342 PF01610 Transposase DM57_342 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_342 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_343 PF17676 LD-carboxypeptidase C-terminal domain DM57_343 PF02016 LD-carboxypeptidase N-terminal domain DM57_344 PF14437 MafB19-like deaminase DM57_345 PF09350 Domain of unknown function (DUF1992) DM57_3475 PF00691 OmpA family DM57_3475 PF13488 Glycine zipper DM57_35 PF03621 MbtH-like protein DM57_350 PF00117 Glutamine amidotransferase class-I DM57_350 PF02540 NAD synthase DM57_350 PF00958 GMP synthase C terminal domain DM57_352 PF00478 IMP dehydrogenase / GMP reductase domain DM57_352 PF00571 CBS domain DM57_356 PF00892 EamA-like transporter family DM57_357 PF03658 RnfH family Ubiquitin DM57_358 PF03364 Polyketide cyclase / dehydrase and lipid transport DM57_359 PF01668 SmpB protein DM57_36 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DM57_360 PF16200 C-terminal region of band_7 DM57_360 PF01145 SPFH domain / Band 7 family DM57_362 PF02896 PEP-utilising enzyme, TIM barrel domain DM57_362 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DM57_362 PF00391 PEP-utilising enzyme, mobile domain DM57_365 PF09286 Pro-kumamolisin, activation domain DM57_365 PF00082 Subtilase family DM57_366 PF03618 Kinase/pyrophosphorylase DM57_367 PF00588 SpoU rRNA Methylase family DM57_367 PF08032 RNA 2'-O ribose methyltransferase substrate binding DM57_368 PF01351 Ribonuclease HII DM57_369 PF02684 Lipid-A-disaccharide synthetase DM57_37 PF00005 ABC transporter DM57_370 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DM57_370 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_371 PF07977 FabA-like domain DM57_372 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DM57_372 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_374 PF07244 Surface antigen variable number repeat DM57_374 PF01103 Surface antigen DM57_375 PF17820 PDZ domain DM57_375 PF02163 Peptidase family M50 DM57_376 PF13288 DXP reductoisomerase C-terminal domain DM57_376 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DM57_376 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DM57_378 PF01255 Putative undecaprenyl diphosphate synthase DM57_379 PF01765 Ribosome recycling factor DM57_38 PF01032 FecCD transport family DM57_380 PF00696 Amino acid kinase family DM57_381 PF00889 Elongation factor TS DM57_382 PF00318 Ribosomal protein S2 DM57_383 PF00557 Metallopeptidase family M24 DM57_384 PF08335 GlnD PII-uridylyltransferase DM57_384 PF01966 HD domain DM57_384 PF01909 Nucleotidyltransferase domain DM57_385 PF00849 RNA pseudouridylate synthase DM57_385 PF01479 S4 domain DM57_386 PF01327 Polypeptide deformylase DM57_387 PF00533 BRCA1 C Terminus (BRCT) domain DM57_387 PF03120 NAD-dependent DNA ligase OB-fold domain DM57_387 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DM57_387 PF12826 Helix-hairpin-helix motif DM57_387 PF01653 NAD-dependent DNA ligase adenylation domain DM57_389 PF06470 SMC proteins Flexible Hinge Domain DM57_389 PF02463 RecF/RecN/SMC N terminal domain DM57_391 PF00155 Aminotransferase class I and II DM57_392 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DM57_392 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_392 PF14602 Hexapeptide repeat of succinyl-transferase DM57_393 PF03960 ArsC family DM57_394 PF07687 Peptidase dimerisation domain DM57_394 PF01546 Peptidase family M20/M25/M40 DM57_395 PF05175 Methyltransferase small domain DM57_396 PF13091 PLD-like domain DM57_397 PF00255 Glutathione peroxidase DM57_398 PF12848 ABC transporter DM57_398 PF00005 ABC transporter DM57_3993 PF07690 Major Facilitator Superfamily DM57_40 PF01497 Periplasmic binding protein DM57_400 PF18073 Rubredoxin metal binding domain DM57_401 PF00842 Alanine racemase, C-terminal domain DM57_401 PF01168 Alanine racemase, N-terminal domain DM57_402 PF07690 Major Facilitator Superfamily DM57_403 PF08543 Phosphomethylpyrimidine kinase DM57_4037 PF00005 ABC transporter DM57_4037 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_4042 PF03576 Peptidase family S58 DM57_407 PF00814 Glycoprotease family DM57_409 PF00270 DEAD/DEAH box helicase DM57_409 PF00271 Helicase conserved C-terminal domain DM57_412 PF00463 Isocitrate lyase family DM57_413 PF00582 Universal stress protein family DM57_4134 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_4134 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DM57_414 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_414 PF03466 LysR substrate binding domain DM57_4146 PF02311 AraC-like ligand binding domain DM57_4146 PF12833 Helix-turn-helix domain DM57_415 PF13419 Haloacid dehalogenase-like hydrolase DM57_416 PF01274 Malate synthase DM57_418 PF03737 Aldolase/RraA DM57_419 PF12833 Helix-turn-helix domain DM57_419 PF02311 AraC-like ligand binding domain DM57_42 PF00664 ABC transporter transmembrane region DM57_42 PF00005 ABC transporter DM57_424 PF00749 tRNA synthetases class I (E and Q), catalytic domain DM57_425 PF01734 Patatin-like phospholipase DM57_4256 PF13609 Gram-negative porin DM57_426 PF00877 NlpC/P60 family DM57_427 PF00005 ABC transporter DM57_427 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DM57_428 PF12911 N-terminal TM domain of oligopeptide transport permease C DM57_428 PF00528 Binding-protein-dependent transport system inner membrane component DM57_429 PF00528 Binding-protein-dependent transport system inner membrane component DM57_43 PF13193 AMP-binding enzyme C-terminal domain DM57_43 PF00501 AMP-binding enzyme DM57_43 PF00668 Condensation domain DM57_43 PF00550 Phosphopantetheine attachment site DM57_430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DM57_433 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DM57_433 PF00384 Molybdopterin oxidoreductase DM57_433 PF01568 Molydopterin dinucleotide binding domain DM57_434 PF00175 Oxidoreductase NAD-binding domain DM57_434 PF00970 Oxidoreductase FAD-binding domain DM57_435 PF11953 Domain of unknown function (DUF3470) DM57_435 PF00037 4Fe-4S binding domain DM57_438 PF00557 Metallopeptidase family M24 DM57_44 PF00501 AMP-binding enzyme DM57_44 PF00550 Phosphopantetheine attachment site DM57_44 PF00668 Condensation domain DM57_44 PF13193 AMP-binding enzyme C-terminal domain DM57_440 PF00206 Lyase DM57_440 PF02655 ATP-grasp domain DM57_441 PF00291 Pyridoxal-phosphate dependent enzyme DM57_442 PF00009 Elongation factor Tu GTP binding domain DM57_4424 PF01494 FAD binding domain DM57_443 PF01507 Phosphoadenosine phosphosulfate reductase family DM57_445 PF00266 Aminotransferase class-V DM57_446 PF01757 Acyltransferase family DM57_448 PF02779 Transketolase, pyrimidine binding domain DM57_448 PF02780 Transketolase, C-terminal domain DM57_449 PF02780 Transketolase, C-terminal domain DM57_449 PF02779 Transketolase, pyrimidine binding domain DM57_449 PF00456 Transketolase, thiamine diphosphate binding domain DM57_45 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DM57_453 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DM57_455 PF00668 Condensation domain DM57_455 PF00550 Phosphopantetheine attachment site DM57_455 PF13193 AMP-binding enzyme C-terminal domain DM57_455 PF00501 AMP-binding enzyme DM57_456 PF00501 AMP-binding enzyme DM57_456 PF13193 AMP-binding enzyme C-terminal domain DM57_456 PF00668 Condensation domain DM57_456 PF00550 Phosphopantetheine attachment site DM57_459 PF00501 AMP-binding enzyme DM57_459 PF13193 AMP-binding enzyme C-terminal domain DM57_459 PF00668 Condensation domain DM57_459 PF00550 Phosphopantetheine attachment site DM57_459 PF00975 Thioesterase domain DM57_46 PF00593 TonB dependent receptor DM57_46 PF07715 TonB-dependent Receptor Plug Domain DM57_460 PF00009 Elongation factor Tu GTP binding domain DM57_461 PF13533 Biotin-lipoyl like DM57_462 PF00873 AcrB/AcrD/AcrF family DM57_468 PF13840 ACT domain DM57_468 PF00696 Amino acid kinase family DM57_468 PF01842 ACT domain DM57_469 PF11734 TilS substrate C-terminal domain DM57_469 PF01171 PP-loop family DM57_469 PF09179 TilS substrate binding domain DM57_47 PF00551 Formyl transferase DM57_470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DM57_472 PF01406 tRNA synthetases class I (C) catalytic domain DM57_472 PF09190 DALR domain DM57_474 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DM57_475 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DM57_476 PF00149 Calcineurin-like phosphoesterase DM57_477 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_478 PF00588 SpoU rRNA Methylase family DM57_479 PF00459 Inositol monophosphatase family DM57_48 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM57_48 PF07685 CobB/CobQ-like glutamine amidotransferase domain DM57_481 PF05192 MutS domain III DM57_481 PF00488 MutS domain V DM57_481 PF05190 MutS family domain IV DM57_481 PF01624 MutS domain I DM57_481 PF05188 MutS domain II DM57_4840 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DM57_4840 PF00356 Bacterial regulatory proteins, lacI family DM57_485 PF08007 Cupin superfamily protein DM57_486 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DM57_486 PF00753 Metallo-beta-lactamase superfamily DM57_486 PF10996 Beta-Casp domain DM57_487 PF06804 NlpB/DapX lipoprotein DM57_488 PF00701 Dihydrodipicolinate synthetase family DM57_49 PF12557 Cob(I)alamin adenosyltransferase N terminal DM57_49 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DM57_490 PF00579 tRNA synthetases class I (W and Y) DM57_491 PF02163 Peptidase family M50 DM57_492 PF01300 Telomere recombination DM57_4923 PF01494 FAD binding domain DM57_493 PF02811 PHP domain DM57_494 PF00561 alpha/beta hydrolase fold DM57_495 PF04305 Protein of unknown function (DUF455) DM57_496 PF00132 Bacterial transferase hexapeptide (six repeats) DM57_497 PF01430 Hsp33 protein DM57_499 PF04977 Septum formation initiator DM57_50 PF01890 Cobalamin synthesis G C-terminus DM57_500 PF03952 Enolase, N-terminal domain DM57_500 PF00113 Enolase, C-terminal TIM barrel domain DM57_501 PF00793 DAHP synthetase I family DM57_502 PF00117 Glutamine amidotransferase class-I DM57_502 PF06418 CTP synthase N-terminus DM57_504 PF03772 Competence protein DM57_504 PF00753 Metallo-beta-lactamase superfamily DM57_505 PF01026 TatD related DNase DM57_506 PF00005 ABC transporter DM57_507 PF12704 MacB-like periplasmic core domain DM57_507 PF02687 FtsX-like permease family DM57_509 PF17768 RecJ OB domain DM57_509 PF02272 DHHA1 domain DM57_509 PF01368 DHH family DM57_51 PF03824 High-affinity nickel-transport protein DM57_510 PF03462 PCRF domain DM57_510 PF00472 RF-1 domain DM57_511 PF01336 OB-fold nucleic acid binding domain DM57_511 PF00152 tRNA synthetases class II (D, K and N) DM57_513 PF04384 Iron-sulphur cluster assembly DM57_514 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_515 PF00012 Hsp70 protein DM57_516 PF07743 HSCB C-terminal oligomerisation domain DM57_517 PF01521 Iron-sulphur cluster biosynthesis DM57_518 PF01592 NifU-like N terminal domain DM57_519 PF00266 Aminotransferase class-V DM57_52 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM57_52 PF07683 Cobalamin synthesis protein cobW C-terminal domain DM57_520 PF02082 Transcriptional regulator DM57_521 PF01451 Low molecular weight phosphotyrosine protein phosphatase DM57_523 PF02589 LUD domain DM57_523 PF13183 4Fe-4S dicluster domain DM57_523 PF11870 Domain of unknown function (DUF3390) DM57_524 PF02754 Cysteine-rich domain DM57_525 PF01614 Bacterial transcriptional regulator DM57_525 PF09339 IclR helix-turn-helix domain DM57_529 PF09361 Phasin protein DM57_53 PF02514 CobN/Magnesium Chelatase DM57_530 PF00768 D-alanyl-D-alanine carboxypeptidase DM57_533 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_533 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DM57_534 PF00364 Biotin-requiring enzyme DM57_534 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DM57_534 PF02817 e3 binding domain DM57_535 PF17831 Pyruvate dehydrogenase E1 component middle domain DM57_535 PF00456 Transketolase, thiamine diphosphate binding domain DM57_536 PF00989 PAS fold DM57_536 PF00512 His Kinase A (phospho-acceptor) domain DM57_536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_537 PF00196 Bacterial regulatory proteins, luxR family DM57_537 PF00072 Response regulator receiver domain DM57_538 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DM57_538 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DM57_539 PF01432 Peptidase family M3 DM57_54 PF07728 AAA domain (dynein-related subfamily) DM57_54 PF17863 AAA lid domain DM57_54 PF13519 von Willebrand factor type A domain DM57_542 PF07690 Major Facilitator Superfamily DM57_543 PF07690 Major Facilitator Superfamily DM57_544 PF00384 Molybdopterin oxidoreductase DM57_544 PF01568 Molydopterin dinucleotide binding domain DM57_544 PF14710 Respiratory nitrate reductase alpha N-terminal DM57_545 PF14711 Respiratory nitrate reductase beta C-terminal DM57_545 PF13247 4Fe-4S dicluster domain DM57_546 PF02613 Nitrate reductase delta subunit DM57_547 PF02665 Nitrate reductase gamma subunit DM57_548 PF07730 Histidine kinase DM57_549 PF00196 Bacterial regulatory proteins, luxR family DM57_549 PF00072 Response regulator receiver domain DM57_552 PF02954 Bacterial regulatory protein, Fis family DM57_552 PF00158 Sigma-54 interaction domain DM57_552 PF00072 Response regulator receiver domain DM57_553 PF00512 His Kinase A (phospho-acceptor) domain DM57_553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_553 PF00989 PAS fold DM57_556 PF00994 Probable molybdopterin binding domain DM57_556 PF18146 Damage-inducible protein CinA KH domain DM57_556 PF02464 Competence-damaged protein DM57_56 PF02230 Phospholipase/Carboxylesterase DM57_562 PF00583 Acetyltransferase (GNAT) family DM57_562 PF00696 Amino acid kinase family DM57_563 PF04362 Bacterial Fe(2+) trafficking DM57_564 PF07690 Major Facilitator Superfamily DM57_564 PF00083 Sugar (and other) transporter DM57_565 PF02515 CoA-transferase family III DM57_566 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_566 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_566 PF18158 Adaptive response protein AidB N-terminal domain DM57_567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_567 PF03466 LysR substrate binding domain DM57_571 PF01527 Transposase DM57_577 PF00472 RF-1 domain DM57_578 PF13538 UvrD-like helicase C-terminal domain DM57_579 PF12705 PD-(D/E)XK nuclease superfamily DM57_579 PF00580 UvrD/REP helicase N-terminal domain DM57_579 PF13361 UvrD-like helicase C-terminal domain DM57_58 PF02839 Carbohydrate binding domain DM57_580 PF17946 RecC C-terminal domain DM57_581 PF12805 FUSC-like inner membrane protein yccS DM57_582 PF00324 Amino acid permease DM57_584 PF13416 Bacterial extracellular solute-binding protein DM57_585 PF00528 Binding-protein-dependent transport system inner membrane component DM57_586 PF00005 ABC transporter DM57_586 PF08402 TOBE domain DM57_587 PF13404 AsnC-type helix-turn-helix domain DM57_587 PF01037 Lrp/AsnC ligand binding domain DM57_59 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_590 PF02082 Transcriptional regulator DM57_598 PF00196 Bacterial regulatory proteins, luxR family DM57_598 PF00072 Response regulator receiver domain DM57_60 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_601 PF18027 Cytosolic carboxypeptidase N-terminal domain DM57_601 PF00246 Zinc carboxypeptidase DM57_602 PF03883 Peroxide stress protein YaaA DM57_604 PF00155 Aminotransferase class I and II DM57_606 PF00378 Enoyl-CoA hydratase/isomerase DM57_609 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_609 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_609 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_61 PF02570 Precorrin-8X methylmutase DM57_613 PF01575 MaoC like domain DM57_613 PF00171 Aldehyde dehydrogenase family DM57_614 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_614 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_614 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_615 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_617 PF00293 NUDIX domain DM57_619 PF00361 Proton-conducting membrane transporter DM57_62 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DM57_62 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DM57_620 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DM57_620 PF00361 Proton-conducting membrane transporter DM57_621 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DM57_621 PF00361 Proton-conducting membrane transporter DM57_622 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DM57_623 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DM57_624 PF12838 4Fe-4S dicluster domain DM57_625 PF00146 NADH dehydrogenase DM57_626 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DM57_626 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DM57_626 PF00384 Molybdopterin oxidoreductase DM57_627 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DM57_627 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DM57_627 PF10531 SLBB domain DM57_629 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DM57_63 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_630 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DM57_631 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DM57_632 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DM57_634 PF03840 Preprotein translocase SecG subunit DM57_635 PF00121 Triosephosphate isomerase DM57_636 PF00550 Phosphopantetheine attachment site DM57_636 PF02801 Beta-ketoacyl synthase, C-terminal domain DM57_636 PF08659 KR domain DM57_636 PF14765 Polyketide synthase dehydratase DM57_636 PF00698 Acyl transferase domain DM57_636 PF00109 Beta-ketoacyl synthase, N-terminal domain DM57_636 PF08240 Alcohol dehydrogenase GroES-like domain DM57_636 PF16197 Ketoacyl-synthetase C-terminal extension DM57_637 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DM57_637 PF03725 3' exoribonuclease family, domain 2 DM57_637 PF00575 S1 RNA binding domain DM57_637 PF01138 3' exoribonuclease family, domain 1 DM57_637 PF00013 KH domain DM57_638 PF00312 Ribosomal protein S15 DM57_639 PF13458 Periplasmic binding protein DM57_64 PF01888 CbiD DM57_641 PF00484 Carbonic anhydrase DM57_642 PF00916 Sulfate permease family DM57_642 PF01740 STAS domain DM57_644 PF01527 Transposase DM57_646 PF01066 CDP-alcohol phosphatidyltransferase DM57_647 PF02666 Phosphatidylserine decarboxylase DM57_648 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DM57_648 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DM57_649 PF10369 Small subunit of acetolactate synthase DM57_65 PF02571 Precorrin-6x reductase CbiJ/CobK DM57_650 PF00205 Thiamine pyrophosphate enzyme, central domain DM57_650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DM57_650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DM57_658 PF00534 Glycosyl transferases group 1 DM57_658 PF13439 Glycosyltransferase Family 4 DM57_659 PF01219 Prokaryotic diacylglycerol kinase DM57_66 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DM57_660 PF08360 QacR-like protein, C-terminal region DM57_660 PF00440 Bacterial regulatory proteins, tetR family DM57_661 PF03641 Possible lysine decarboxylase DM57_663 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DM57_664 PF07690 Major Facilitator Superfamily DM57_665 PF01610 Transposase DM57_665 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_665 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_666 PF01425 Amidase DM57_668 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DM57_668 PF01411 tRNA synthetases class II (A) DM57_668 PF02272 DHHA1 domain DM57_67 PF02638 Glycosyl hydrolase-like 10 DM57_673 PF00893 Small Multidrug Resistance protein DM57_675 PF00486 Transcriptional regulatory protein, C terminal DM57_675 PF00072 Response regulator receiver domain DM57_676 PF13493 Domain of unknown function (DUF4118) DM57_676 PF13492 GAF domain DM57_676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_676 PF00512 His Kinase A (phospho-acceptor) domain DM57_676 PF02702 Osmosensitive K+ channel His kinase sensor domain DM57_678 PF02669 K+-transporting ATPase, c chain DM57_68 PF07690 Major Facilitator Superfamily DM57_680 PF03814 Potassium-transporting ATPase A subunit DM57_682 PF00107 Zinc-binding dehydrogenase DM57_682 PF08240 Alcohol dehydrogenase GroES-like domain DM57_683 PF02142 MGS-like domain DM57_687 PF01709 Transcriptional regulator DM57_688 PF02843 Phosphoribosylglycinamide synthetase, C domain DM57_688 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DM57_688 PF02844 Phosphoribosylglycinamide synthetase, N domain DM57_689 PF01218 Coproporphyrinogen III oxidase DM57_69 PF01047 MarR family DM57_692 PF02590 Predicted SPOUT methyltransferase DM57_693 PF02545 Maf-like protein DM57_694 PF00575 S1 RNA binding domain DM57_694 PF10150 Ribonuclease E/G family DM57_695 PF00860 Permease family DM57_70 PF13458 Periplasmic binding protein DM57_701 PF12680 SnoaL-like domain DM57_701 PF08281 Sigma-70, region 4 DM57_701 PF04542 Sigma-70 region 2 DM57_702 PF02627 Carboxymuconolactone decarboxylase family DM57_704 PF07690 Major Facilitator Superfamily DM57_707 PF00535 Glycosyl transferase family 2 DM57_708 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DM57_709 PF00534 Glycosyl transferases group 1 DM57_709 PF13439 Glycosyltransferase Family 4 DM57_712 PF00534 Glycosyl transferases group 1 DM57_712 PF13439 Glycosyltransferase Family 4 DM57_713 PF00005 ABC transporter DM57_713 PF00664 ABC transporter transmembrane region DM57_714 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DM57_714 PF14579 Helix-hairpin-helix motif DM57_714 PF01336 OB-fold nucleic acid binding domain DM57_714 PF02811 PHP domain DM57_714 PF07733 Bacterial DNA polymerase III alpha NTPase domain DM57_716 PF00749 tRNA synthetases class I (E and Q), catalytic domain DM57_717 PF00271 Helicase conserved C-terminal domain DM57_717 PF00270 DEAD/DEAH box helicase DM57_718 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DM57_72 PF00043 Glutathione S-transferase, C-terminal domain DM57_72 PF02798 Glutathione S-transferase, N-terminal domain DM57_720 PF02222 ATP-grasp domain DM57_720 PF01370 NAD dependent epimerase/dehydratase family DM57_722 PF09397 Ftsk gamma domain DM57_722 PF01580 FtsK/SpoIIIE family DM57_722 PF17854 FtsK alpha domain DM57_722 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DM57_724 PF10282 Lactonase, 7-bladed beta-propeller DM57_725 PF00723 Glycosyl hydrolases family 15 DM57_727 PF00440 Bacterial regulatory proteins, tetR family DM57_727 PF17938 Tetracyclin repressor-like, C-terminal domain DM57_728 PF04060 Putative Fe-S cluster DM57_729 PF10576 Iron-sulfur binding domain of endonuclease III DM57_729 PF00730 HhH-GPD superfamily base excision DNA repair protein DM57_729 PF00633 Helix-hairpin-helix motif DM57_73 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_73 PF03466 LysR substrate binding domain DM57_730 PF00892 EamA-like transporter family DM57_732 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DM57_732 PF13542 Helix-turn-helix domain of transposase family ISL3 DM57_732 PF01610 Transposase DM57_733 PF00034 Cytochrome c DM57_734 PF00034 Cytochrome c DM57_735 PF17871 AAA lid domain DM57_735 PF10431 C-terminal, D2-small domain, of ClpB protein DM57_735 PF02861 Clp amino terminal domain, pathogenicity island component DM57_735 PF07724 AAA domain (Cdc48 subfamily) DM57_735 PF00004 ATPase family associated with various cellular activities (AAA) DM57_737 PF03594 Benzoate membrane transport protein DM57_738 PF00923 Transaldolase/Fructose-6-phosphate aldolase DM57_739 PF06983 3-demethylubiquinone-9 3-methyltransferase DM57_74 PF03928 Haem-degrading DM57_740 PF00474 Sodium:solute symporter family DM57_742 PF13847 Methyltransferase domain DM57_744 PF04345 Chorismate lyase DM57_745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_745 PF00183 Hsp90 protein DM57_746 PF00155 Aminotransferase class I and II DM57_748 PF00892 EamA-like transporter family DM57_749 PF00155 Aminotransferase class I and II DM57_75 PF00106 short chain dehydrogenase DM57_75 PF00561 alpha/beta hydrolase fold DM57_750 PF01527 Transposase DM57_752 PF01381 Helix-turn-helix DM57_752 PF08671 Anti-repressor SinI DM57_753 PF00596 Class II Aldolase and Adducin N-terminal domain DM57_754 PF00701 Dihydrodipicolinate synthetase family DM57_755 PF03473 MOSC domain DM57_755 PF03475 3-alpha domain DM57_756 PF00561 alpha/beta hydrolase fold DM57_757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_757 PF03466 LysR substrate binding domain DM57_758 PF03466 LysR substrate binding domain DM57_758 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_76 PF00696 Amino acid kinase family DM57_760 PF01479 S4 domain DM57_760 PF00849 RNA pseudouridylate synthase DM57_763 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_763 PF00970 Oxidoreductase FAD-binding domain DM57_763 PF00175 Oxidoreductase NAD-binding domain DM57_764 PF00202 Aminotransferase class-III DM57_765 PF00583 Acetyltransferase (GNAT) family DM57_767 PF00005 ABC transporter DM57_768 PF12399 Branched-chain amino acid ATP-binding cassette transporter DM57_768 PF00005 ABC transporter DM57_769 PF11862 Domain of unknown function (DUF3382) DM57_769 PF02653 Branched-chain amino acid transport system / permease component DM57_77 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DM57_77 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DM57_770 PF02653 Branched-chain amino acid transport system / permease component DM57_771 PF01527 Transposase DM57_773 PF02719 Polysaccharide biosynthesis protein DM57_774 PF00953 Glycosyl transferase family 4 DM57_777 PF01527 Transposase DM57_780 PF00535 Glycosyl transferase family 2 DM57_783 PF01370 NAD dependent epimerase/dehydratase family DM57_785 PF00005 ABC transporter DM57_787 PF04321 RmlD substrate binding domain DM57_788 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DM57_789 PF00483 Nucleotidyl transferase DM57_79 PF13520 Amino acid permease DM57_790 PF16363 GDP-mannose 4,6 dehydratase DM57_791 PF00149 Calcineurin-like phosphoesterase DM57_793 PF01979 Amidohydrolase family DM57_794 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DM57_794 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DM57_795 PF00156 Phosphoribosyl transferase domain DM57_796 PF03652 Holliday junction resolvase DM57_797 PF02622 Uncharacterized ACR, COG1678 DM57_799 PF00301 Rubredoxin DM57_8 PF00528 Binding-protein-dependent transport system inner membrane component DM57_801 PF00118 TCP-1/cpn60 chaperonin family DM57_802 PF00166 Chaperonin 10 Kd subunit DM57_804 PF01638 HxlR-like helix-turn-helix DM57_805 PF08240 Alcohol dehydrogenase GroES-like domain DM57_805 PF00107 Zinc-binding dehydrogenase DM57_81 PF00528 Binding-protein-dependent transport system inner membrane component DM57_815 PF01810 LysE type translocator DM57_816 PF03009 Glycerophosphoryl diester phosphodiesterase family DM57_817 PF07690 Major Facilitator Superfamily DM57_818 PF01925 Sulfite exporter TauE/SafE DM57_820 PF10605 3HB-oligomer hydrolase (3HBOH) DM57_824 PF03466 LysR substrate binding domain DM57_824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_825 PF01032 FecCD transport family DM57_828 PF00005 ABC transporter DM57_829 PF00593 TonB dependent receptor DM57_829 PF07715 TonB-dependent Receptor Plug Domain DM57_83 PF00005 ABC transporter DM57_832 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DM57_832 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DM57_833 PF00111 2Fe-2S iron-sulfur cluster binding domain DM57_833 PF01799 [2Fe-2S] binding domain DM57_834 PF07690 Major Facilitator Superfamily DM57_835 PF00892 EamA-like transporter family DM57_837 PF00266 Aminotransferase class-V DM57_838 PF03466 LysR substrate binding domain DM57_838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_839 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DM57_839 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DM57_84 PF00528 Binding-protein-dependent transport system inner membrane component DM57_840 PF00881 Nitroreductase family DM57_841 PF07690 Major Facilitator Superfamily DM57_844 PF04209 homogentisate 1,2-dioxygenase DM57_845 PF07690 Major Facilitator Superfamily DM57_847 PF01494 FAD binding domain DM57_85 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DM57_852 PF02770 Acyl-CoA dehydrogenase, middle domain DM57_852 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DM57_852 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DM57_853 PF10417 C-terminal domain of 1-Cys peroxiredoxin DM57_853 PF00578 AhpC/TSA family DM57_86 PF13649 Methyltransferase domain DM57_862 PF03477 ATP cone domain DM57_863 PF00464 Serine hydroxymethyltransferase DM57_864 PF00106 short chain dehydrogenase DM57_865 PF03061 Thioesterase superfamily DM57_866 PF01618 MotA/TolQ/ExbB proton channel family DM57_867 PF02472 Biopolymer transport protein ExbD/TolR DM57_869 PF04052 TolB amino-terminal domain DM57_869 PF07676 WD40-like Beta Propeller Repeat DM57_87 PF07690 Major Facilitator Superfamily DM57_870 PF00691 OmpA family DM57_873 PF01527 Transposase DM57_876 PF03449 Transcription elongation factor, N-terminal DM57_876 PF01272 Transcription elongation factor, GreA/GreB, C-term DM57_879 PF02824 TGS domain DM57_879 PF04607 Region found in RelA / SpoT proteins DM57_879 PF13291 ACT domain DM57_88 PF00501 AMP-binding enzyme DM57_88 PF13193 AMP-binding enzyme C-terminal domain DM57_880 PF01192 RNA polymerase Rpb6 DM57_881 PF00625 Guanylate kinase DM57_882 PF08340 Domain of unknown function (DUF1732) DM57_882 PF03755 YicC-like family, N-terminal region DM57_883 PF03725 3' exoribonuclease family, domain 2 DM57_883 PF01138 3' exoribonuclease family, domain 1 DM57_884 PF01725 Ham1 family DM57_885 PF04055 Radical SAM superfamily DM57_885 PF06969 HemN C-terminal domain DM57_889 PF00083 Sugar (and other) transporter DM57_889 PF07690 Major Facilitator Superfamily DM57_891 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DM57_893 PF00654 Voltage gated chloride channel DM57_895 PF03776 Septum formation topological specificity factor MinE DM57_896 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DM57_897 PF03775 Septum formation inhibitor MinC, C-terminal domain DM57_897 PF05209 Septum formation inhibitor MinC, N-terminal domain DM57_90 PF00672 HAMP domain DM57_90 PF02203 Tar ligand binding domain homologue DM57_90 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DM57_901 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DM57_901 PF02403 Seryl-tRNA synthetase N-terminal domain DM57_903 PF16193 AAA C-terminal domain DM57_903 PF00004 ATPase family associated with various cellular activities (AAA) DM57_903 PF12002 MgsA AAA+ ATPase C terminal DM57_904 PF03548 Outer membrane lipoprotein carrier protein LolA DM57_905 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DM57_905 PF01580 FtsK/SpoIIIE family DM57_905 PF09397 Ftsk gamma domain DM57_905 PF17854 FtsK alpha domain DM57_906 PF07992 Pyridine nucleotide-disulphide oxidoreductase DM57_907 PF00488 MutS domain V DM57_907 PF01713 Smr domain DM57_908 PF03458 UPF0126 domain DM57_909 PF17912 MalK OB fold domain DM57_909 PF00005 ABC transporter DM57_91 PF01584 CheW-like domain DM57_910 PF00528 Binding-protein-dependent transport system inner membrane component DM57_912 PF01547 Bacterial extracellular solute-binding protein DM57_913 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DM57_913 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DM57_914 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DM57_915 PF01380 SIS domain DM57_915 PF01418 Helix-turn-helix domain, rpiR family DM57_915 PF02685 Glucokinase DM57_916 PF00497 Bacterial extracellular solute-binding proteins, family 3 DM57_918 PF00005 ABC transporter DM57_919 PF00291 Pyridoxal-phosphate dependent enzyme DM57_921 PF07690 Major Facilitator Superfamily DM57_924 PF00202 Aminotransferase class-III DM57_925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DM57_925 PF01872 RibD C-terminal domain DM57_926 PF00677 Lumazine binding domain DM57_927 PF00925 GTP cyclohydrolase II DM57_927 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DM57_928 PF00885 6,7-dimethyl-8-ribityllumazine synthase DM57_929 PF01029 NusB family DM57_93 PF12852 Cupin DM57_93 PF12833 Helix-turn-helix domain DM57_930 PF00155 Aminotransferase class I and II DM57_931 PF01464 Transglycosylase SLT domain DM57_932 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DM57_934 PF00291 Pyridoxal-phosphate dependent enzyme DM57_937 PF02325 YGGT family DM57_939 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DM57_94 PF13609 Gram-negative porin DM57_940 PF00082 Subtilase family DM57_940 PF09286 Pro-kumamolisin, activation domain DM57_941 PF08241 Methyltransferase domain DM57_944 PF02390 Putative methyltransferase DM57_945 PF02673 Bacitracin resistance protein BacA DM57_947 PF03692 Putative zinc- or iron-chelating domain DM57_948 PF04055 Radical SAM superfamily DM57_948 PF06969 HemN C-terminal domain DM57_951 PF00581 Rhodanese-like domain DM57_952 PF00202 Aminotransferase class-III DM57_954 PF02653 Branched-chain amino acid transport system / permease component DM57_958 PF00005 ABC transporter DM57_959 PF00005 ABC transporter DM57_96 PF03621 MbtH-like protein DM57_960 PF01774 UreD urease accessory protein DM57_961 PF00547 Urease, gamma subunit DM57_962 PF00699 Urease beta subunit DM57_963 PF00449 Urease alpha-subunit, N-terminal domain DM57_963 PF01979 Amidohydrolase family DM57_964 PF02814 UreE urease accessory protein, N-terminal domain DM57_964 PF05194 UreE urease accessory protein, C-terminal domain DM57_965 PF01730 UreF DM57_966 PF02492 CobW/HypB/UreG, nucleotide-binding domain DM57_967 PF00534 Glycosyl transferases group 1 DM57_967 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DM57_969 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DM57_970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DM57_970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DM57_970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DM57_970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DM57_973 PF13439 Glycosyltransferase Family 4 DM57_973 PF00534 Glycosyl transferases group 1 DM57_974 PF16363 GDP-mannose 4,6 dehydratase DM57_976 PF01527 Transposase DM57_979 PF02567 Phenazine biosynthesis-like protein DM57_980 PF00990 Diguanylate cyclase, GGDEF domain DM57_980 PF00563 EAL domain DM57_980 PF03707 Bacterial signalling protein N terminal repeat DM57_982 PF00850 Histone deacetylase domain DM57_983 PF01546 Peptidase family M20/M25/M40 DM57_983 PF07687 Peptidase dimerisation domain DM57_984 PF00083 Sugar (and other) transporter DM57_984 PF07690 Major Facilitator Superfamily DM57_985 PF03466 LysR substrate binding domain DM57_985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_987 PF03466 LysR substrate binding domain DM57_987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DM57_989 PF00521 DNA gyrase/topoisomerase IV, subunit A DM57_99 PF00155 Aminotransferase class I and II DM57_990 PF00204 DNA gyrase B DM57_990 PF01751 Toprim domain DM57_990 PF00986 DNA gyrase B subunit, carboxyl terminus DM57_990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DM57_993 PF00301 Rubredoxin DM57_996 PF01176 Translation initiation factor 1A / IF-1 DM57_999 PF01527 Transposase