locus-tag	class	description
BOC52_00005	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BOC52_00030	COG3425	synthase
BOC52_00035	COG1024	Enoyl-CoA hydratase
BOC52_00040	COG1024	Enoyl-CoA hydratase
BOC52_00045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOC52_00050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BOC52_00070	COG2207	Transcriptional regulator
BOC52_00075	COG0500	methyltransferase
BOC52_00095	COG3275	phosphorelay sensor kinase activity
BOC52_00145	COG4598	ABC transporter
BOC52_00150	COG4160	amino acid transport
BOC52_00155	COG4215	(ABC) transporter
BOC52_00175	COG2259	Doxx family
BOC52_00215	COG1404	Belongs to the peptidase S8 family
BOC52_00235	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_00240	COG0243	molybdopterin cofactor binding
BOC52_00245	COG3781	membrane
BOC52_00250	COG4682	membrane
BOC52_00260	COG1914	H( )-stimulated, divalent metal cation uptake system
BOC52_00265	COG2140	Oxalate decarboxylase
BOC52_00310	COG3209	COG3209 Rhs family protein
BOC52_00320	COG3501	Rhs element vgr protein
BOC52_00345	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BOC52_00355	COG0601	transmembrane transport
BOC52_00360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOC52_00380	COG0583	DNA-binding transcription factor activity
BOC52_00410	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_00460	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BOC52_00480	COG0840	transmembrane signaling receptor activity
BOC52_00505	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BOC52_00530	COG0596	Alpha beta hydrolase
BOC52_00550	COG0583	DNA-binding transcription factor activity
BOC52_00560	COG0492	ferredoxin-NADP+ reductase activity
BOC52_00610	COG1522	sequence-specific DNA binding
BOC52_00620	COG0154	amidase activity
BOC52_00655	COG0477	Major facilitator Superfamily
BOC52_00680	COG0028	Belongs to the TPP enzyme family
BOC52_00685	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_00690	COG1414	Transcriptional regulator
BOC52_00720	COG2146	nitrite reductase [NAD(P)H] activity
BOC52_00730	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_00735	COG1414	Transcriptional regulator
BOC52_00750	COG1408	metallophosphoesterase
BOC52_00760	COG1285	pathogenesis
BOC52_00765	COG2197	response regulator
BOC52_00790	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BOC52_00795	COG0516	GMP reductase activity
BOC52_00795	COG0517	IMP dehydrogenase activity
BOC52_00820	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_00845	COG1902	pentaerythritol trinitrate reductase activity
BOC52_00865	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_00880	COG0531	amino acid
BOC52_00885	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BOC52_00890	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_00925	COG0583	DNA-binding transcription factor activity
BOC52_00935	COG0583	DNA-binding transcription factor activity
BOC52_00980	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOC52_00985	COG1957	nucleoside hydrolase
BOC52_01035	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOC52_01050	COG1113	amino acid transport
BOC52_01070	COG4221	oxidoreductase activity
BOC52_01110	COG0589	response to stress
BOC52_01170	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOC52_01185	COG3291	Pkd domain containing protein
BOC52_01205	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BOC52_01210	COG2175	clavaminate synthase activity
BOC52_01230	COG0495	leucyl-tRNA aminoacylation
BOC52_01265	COG2373	Large extracellular alpha-helical protein
BOC52_01270	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BOC52_01280	COG2201	protein-glutamate methylesterase activity
BOC52_01285	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOC52_01285	COG4191	Histidine kinase
BOC52_01335	COG1448	Aminotransferase
BOC52_01345	COG1522	sequence-specific DNA binding
BOC52_01370	COG1272	protein, Hemolysin III
BOC52_01415	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOC52_01425	COG5295	Hep Hag repeat protein
BOC52_01425	COG5295	Hep Hag repeat protein
BOC52_01450	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_01460	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_01475	COG2721	sulfolactate sulfo-lyase activity
BOC52_01485	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_01490	COG1129	ABC transporter
BOC52_01510	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_01520	COG2814	Major facilitator Superfamily
BOC52_01525	COG1022	Amp-dependent synthetase and ligase
BOC52_01525	COG3320	Male sterility
BOC52_01530	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_01535	COG1024	Enoyl-CoA hydratase
BOC52_01600	COG1846	Transcriptional regulator
BOC52_01630	COG2197	response regulator
BOC52_01650	COG3511	phospholipase C
BOC52_01655	COG1858	cytochrome C peroxidase
BOC52_01665	COG0038	chloride channel
BOC52_01700	COG0402	S-adenosylhomocysteine deaminase activity
BOC52_01705	COG2508	Transcriptional regulator
BOC52_01710	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BOC52_01725	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_01750	COG0583	DNA-binding transcription factor activity
BOC52_01795	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_01830	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_01845	COG2721	sulfolactate sulfo-lyase activity
BOC52_01865	COG0395	ABC-type sugar transport system, permease component
BOC52_01870	COG1175	transmembrane transport
BOC52_01880	COG3842	ATPase activity
BOC52_01885	COG1414	Transcriptional regulator
BOC52_01890	COG2271	Major facilitator Superfamily
BOC52_01905	COG0583	DNA-binding transcription factor activity
BOC52_01910	COG0477	Major facilitator Superfamily
BOC52_01930	COG0583	DNA-binding transcription factor activity
BOC52_01960	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_01965	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BOC52_01975	COG0683	leucine binding
BOC52_02010	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BOC52_02020	COG0183	Belongs to the thiolase family
BOC52_02045	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_02065	COG1414	Transcriptional regulator
BOC52_02175	COG1215	transferase activity, transferring glycosyl groups
BOC52_02180	COG1538	Outer membrane efflux protein
BOC52_02200	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_02240	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_02255	COG0628	permease
BOC52_02265	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BOC52_02290	COG1902	pentaerythritol trinitrate reductase activity
BOC52_02310	COG1309	transcriptional regulator
BOC52_02350	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
BOC52_02355	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BOC52_02380	COG1024	Enoyl-CoA hydratase
BOC52_02395	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_02410	COG3217	Mosc domain protein beta barrel domain protein
BOC52_02410	COG0633	Ferredoxin
BOC52_02415	COG0642	Histidine kinase
BOC52_02455	COG4208	sulfate ABC transporter
BOC52_02460	COG3842	ATPase activity
BOC52_02475	COG2207	Transcriptional regulator
BOC52_02485	COG3971	2-oxopent-4-enoate hydratase activity
BOC52_02495	COG3384	dioxygenase
BOC52_02500	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_02515	COG1846	Transcriptional regulator
BOC52_02530	COG0745	RESPONSE REGULATOR receiver
BOC52_02535	COG2205	protein histidine kinase activity
BOC52_02585	COG2207	Transcriptional regulator
BOC52_02645	COG1845	cytochrome c oxidase, subunit III
BOC52_02660	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BOC52_02670	COG0477	Major facilitator Superfamily
BOC52_02680	COG3214	Protein conserved in bacteria
BOC52_02695	COG3291	Pkd domain containing protein
BOC52_02850	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BOC52_02875	COG0745	RESPONSE REGULATOR receiver
BOC52_02960	COG2205	protein histidine kinase activity
BOC52_02965	COG0745	RESPONSE REGULATOR receiver
BOC52_02975	COG2066	Belongs to the glutaminase family
BOC52_03005	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_03015	COG1538	Outer membrane efflux protein
BOC52_03025	COG1024	Enoyl-CoA hydratase
BOC52_03030	COG1024	Enoyl-CoA hydratase
BOC52_03045	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BOC52_03050	COG1960	acyl-CoA dehydrogenase activity
BOC52_03065	COG0330	HflC and HflK could
BOC52_03100	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BOC52_03100	COG0028	Belongs to the TPP enzyme family
BOC52_03110	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_03155	COG2252	PERMEase
BOC52_03190	COG3284	Transcriptional regulator
BOC52_03230	COG1132	(ABC) transporter
BOC52_03245	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_03245	COG2226	methyltransferase
BOC52_03245	COG3433	isochorismatase activity
BOC52_03250	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_03250	COG3433	isochorismatase activity
BOC52_03250	COG2226	methyltransferase
BOC52_03260	COG1021	2,3-dihydroxybenzoate-AMP ligase
BOC52_03295	COG0410	ABC transporter
BOC52_03360	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOC52_03365	COG3246	L-lysine catabolic process to acetate
BOC52_03400	COG3119	arylsulfatase activity
BOC52_03420	COG2113	Glycine betaine
BOC52_03440	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
BOC52_03445	COG2181	nitrate reductase activity
BOC52_03445	COG0247	lactate metabolic process
BOC52_03450	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOC52_03450	COG1902	pentaerythritol trinitrate reductase activity
BOC52_03495	COG1621	beta-fructofuranosidase activity
BOC52_03505	COG1566	PFAM secretion protein HlyD family protein
BOC52_03525	COG2814	Major facilitator Superfamily
BOC52_03600	COG3501	Rhs element vgr protein
BOC52_03605	COG3501	Rhs element vgr protein
BOC52_03685	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BOC52_03685	COG0028	Belongs to the TPP enzyme family
BOC52_03690	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BOC52_03700	COG4977	sequence-specific DNA binding
BOC52_03720	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_03725	COG1305	Transglutaminase-like
BOC52_03755	COG2308	Evidence 4 Homologs of previously reported genes of
BOC52_03765	COG0778	Nitroreductase
BOC52_03785	COG0450	alkyl hydroperoxide reductase
BOC52_03790	COG3634	alkyl hydroperoxide reductase activity
BOC52_03830	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_03850	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BOC52_03885	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BOC52_03895	COG0010	Belongs to the arginase family
BOC52_03900	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_03905	COG1396	sequence-specific DNA binding
BOC52_03905	COG1917	Cupin 2, conserved barrel domain protein
BOC52_03920	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BOC52_03925	COG0174	glutamine synthetase
BOC52_03945	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_03950	COG1177	transmembrane transport
BOC52_03960	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOC52_03965	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOC52_04010	COG1796	DNA polymerase
BOC52_04010	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BOC52_04045	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_04055	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BOC52_04070	COG0583	DNA-binding transcription factor activity
BOC52_04100	COG1574	metal-dependent hydrolase with the TIM-barrel fold
BOC52_04110	COG1335	isochorismatase
BOC52_04115	COG0583	DNA-binding transcription factor activity
BOC52_04125	COG2814	Major facilitator Superfamily
BOC52_04165	COG1741	Belongs to the pirin family
BOC52_04170	COG0583	DNA-binding transcription factor activity
BOC52_04225	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BOC52_04240	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BOC52_04280	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOC52_04360	COG0582	viral genome integration into host DNA
BOC52_04370	COG3436	PFAM IS66 Orf2 family protein
BOC52_04375	COG4372	Transposase
BOC52_04380	COG3012	SEC-C Motif Domain Protein
BOC52_04425	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BOC52_04460	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BOC52_04510	COG3193	protein, possibly involved in utilization of glycolate and propanediol
BOC52_04525	COG4633	Protein conserved in bacteria
BOC52_04535	COG0556	nucleotide-excision repair
BOC52_04550	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_04555	COG0667	Aldo Keto reductase
BOC52_04560	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BOC52_04575	COG0789	Transcriptional regulator
BOC52_04620	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_04635	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_04655	COG2271	Major facilitator Superfamily
BOC52_04660	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BOC52_04665	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BOC52_04705	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOC52_04720	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BOC52_04730	COG0531	amino acid
BOC52_04740	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
BOC52_04765	COG2259	Doxx family
BOC52_04775	COG1620	l-lactate permease
BOC52_04780	COG1556	Lactate utilization protein
BOC52_04785	COG1139	Iron-sulfur cluster binding protein
BOC52_04790	COG0247	lactate metabolic process
BOC52_04795	COG2186	Transcriptional regulator
BOC52_04820	COG2011	ABC-type metal ion transport system permease component
BOC52_04825	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BOC52_04840	COG2197	response regulator
BOC52_04880	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BOC52_04895	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BOC52_04905	COG0019	diaminopimelate decarboxylase activity
BOC52_04910	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_04955	COG1301	dicarboxylic acid transport
BOC52_04970	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_04980	COG0583	DNA-binding transcription factor activity
BOC52_05015	COG0709	Synthesizes selenophosphate from selenide and ATP
BOC52_05050	COG1414	Transcriptional regulator
BOC52_05055	COG1288	antiporter activity
BOC52_05065	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BOC52_05100	COG0840	transmembrane signaling receptor activity
BOC52_05115	COG0183	Belongs to the thiolase family
BOC52_05125	COG1414	Transcriptional regulator
BOC52_05130	COG1309	transcriptional regulator
BOC52_05150	COG1473	amidohydrolase
BOC52_05155	COG0583	DNA-binding transcription factor activity
BOC52_05190	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_05220	COG2376	Dihydroxyacetone kinase
BOC52_05225	COG1063	alcohol dehydrogenase
BOC52_05230	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_05235	COG1879	ABC-type sugar transport system periplasmic component
BOC52_05240	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_05245	COG1129	ABC transporter
BOC52_05250	COG0698	ribose 5-phosphate isomerase
BOC52_05260	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_05275	COG1840	ABC-type Fe3 transport system, periplasmic component
BOC52_05280	COG3842	ATPase activity
BOC52_05305	COG3720	iron ion transport
BOC52_05310	COG4558	Periplasmic binding protein
BOC52_05320	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BOC52_05335	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
BOC52_05340	COG2860	membrane
BOC52_05355	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
BOC52_05365	COG1271	oxidase subunit
BOC52_05370	COG1294	oxidase, subunit
BOC52_05385	COG0583	DNA-binding transcription factor activity
BOC52_05390	COG1562	ergosterol biosynthetic process
BOC52_05400	COG0346	lactoylglutathione lyase activity
BOC52_05485	COG1285	pathogenesis
BOC52_05510	COG0840	transmembrane signaling receptor activity
BOC52_05515	COG0535	radical SAM domain protein
BOC52_05580	COG0840	transmembrane signaling receptor activity
BOC52_05640	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BOC52_05645	COG0511	ligase activity, forming carbon-carbon bonds
BOC52_05660	COG1984	allophanate hydrolase subunit 2
BOC52_05705	COG2249	NAD(P)H dehydrogenase (quinone) activity
BOC52_05710	COG0583	DNA-binding transcription factor activity
BOC52_05750	COG3501	Rhs element vgr protein
BOC52_05820	COG2885	chlorophyll binding
BOC52_05855	COG0367	asparagine synthase
BOC52_05880	COG3537	Alpha-1,2-mannosidase
BOC52_05900	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_05945	COG0583	DNA-binding transcription factor activity
BOC52_05955	COG1473	amidohydrolase
BOC52_05970	COG0513	Belongs to the DEAD box helicase family
BOC52_06005	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_06010	COG1879	ABC-type sugar transport system periplasmic component
BOC52_06055	COG5001	Diguanylate cyclase
BOC52_06055	COG3706	GGDEF domain
BOC52_06055	COG4251	negative regulation of phosphorylation
BOC52_06055	COG2203	Gaf domain
BOC52_06090	COG3321	synthase
BOC52_06090	COG0300	oxidoreductase activity
BOC52_06090	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_06090	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_06090	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_06100	COG3835	regulator
BOC52_06105	COG0469	pyruvate kinase activity
BOC52_06110	COG1929	Belongs to the glycerate kinase type-1 family
BOC52_06115	COG2271	Major facilitator Superfamily
BOC52_06155	COG3188	usher protein
BOC52_06180	COG2205	protein histidine kinase activity
BOC52_06180	COG0784	Response regulator, receiver
BOC52_06290	COG2885	chlorophyll binding
BOC52_06305	COG3188	usher protein
BOC52_06310	COG3121	Chaperone
BOC52_06365	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BOC52_06405	COG0432	Pfam Uncharacterised protein family UPF0047
BOC52_06430	COG3501	Rhs element vgr protein
BOC52_06440	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BOC52_06445	COG1177	transmembrane transport
BOC52_06450	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_06485	COG2826	transposase and inactivated derivatives, IS30 family
BOC52_06545	COG0477	Major facilitator Superfamily
BOC52_06560	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOC52_06595	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BOC52_06600	COG1595	DNA-templated transcription, initiation
BOC52_06695	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOC52_06700	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BOC52_06705	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BOC52_06710	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BOC52_06730	COG0302	gtp cyclohydrolase
BOC52_06735	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_06745	COG1045	serine acetyltransferase
BOC52_06795	COG0589	response to stress
BOC52_06800	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOC52_06805	COG0583	DNA-binding transcription factor activity
BOC52_06820	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BOC52_06880	COG0671	phosphoesterase, PA-phosphatase related
BOC52_06890	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_06915	COG0625	glutathione transferase activity
BOC52_06935	COG0583	DNA-binding transcription factor activity
BOC52_06940	COG0473	3-isopropylmalate dehydrogenase activity
BOC52_06965	COG1309	transcriptional regulator
BOC52_06990	COG1396	sequence-specific DNA binding
BOC52_07035	COG1192	Involved in chromosome partitioning
BOC52_07040	COG2801	Transposase and inactivated derivatives
BOC52_07050	COG1393	Belongs to the ArsC family
BOC52_07060	COG1595	DNA-templated transcription, initiation
BOC52_07090	COG3706	GGDEF domain
BOC52_07105	COG1562	ergosterol biosynthetic process
BOC52_07115	COG1657	PFAM Prenyltransferase squalene oxidase
BOC52_07130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOC52_07135	COG0765	amino acid transport
BOC52_07140	COG1126	abc transporter atp-binding protein
BOC52_07150	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BOC52_07185	COG2072	flavoprotein involved in K transport
BOC52_07190	COG1136	(ABC) transporter
BOC52_07230	COG5002	protein histidine kinase activity
BOC52_07230	COG3447	MASE1 domain protein
BOC52_07230	COG5001	Diguanylate cyclase
BOC52_07285	COG0454	-acetyltransferase
BOC52_07285	COG0456	acetyltransferase
BOC52_07310	COG0154	amidase activity
BOC52_07320	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_07385	COG3302	dmso reductase anchor subunit
BOC52_07390	COG0437	4 iron, 4 sulfur cluster binding
BOC52_07395	COG0243	molybdopterin cofactor binding
BOC52_07420	COG3246	L-lysine catabolic process to acetate
BOC52_07425	COG2175	clavaminate synthase activity
BOC52_07440	COG2909	trisaccharide binding
BOC52_07460	COG0071	Belongs to the small heat shock protein (HSP20) family
BOC52_07475	COG2239	Acts as a magnesium transporter
BOC52_07535	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOC52_07580	COG0022	dehydrogenase e1 component
BOC52_07610	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BOC52_07630	COG2091	lysine biosynthetic process via aminoadipic acid
BOC52_07640	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BOC52_07645	COG2084	Dehydrogenase
BOC52_07660	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BOC52_07665	COG0688	phosphatidylethanolamine metabolic process
BOC52_07680	COG5265	(ABC) transporter
BOC52_07690	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_07695	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BOC52_07700	COG0859	PFAM glycosyl transferase family 9
BOC52_07705	COG2192	nodulation
BOC52_07740	COG2204	response regulator
BOC52_07775	COG2823	Periplasmic or secreted lipoprotein
BOC52_07780	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_07805	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_07830	COG1914	H( )-stimulated, divalent metal cation uptake system
BOC52_07835	COG1573	uracil-dna glycosylase
BOC52_07855	COG0516	GMP reductase activity
BOC52_07855	COG0517	IMP dehydrogenase activity
BOC52_07950	COG3685	Protein conserved in bacteria
BOC52_07955	COG3546	catalase activity
BOC52_07965	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BOC52_08060	COG1113	amino acid transport
BOC52_08065	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_08085	COG1522	sequence-specific DNA binding
BOC52_08135	COG4964	Belongs to the GSP D family
BOC52_08185	COG0463	Glycosyl transferase, family 2
BOC52_08240	COG1966	Carbon starvation protein
BOC52_08245	COG2879	small protein
BOC52_08265	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BOC52_08290	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BOC52_08295	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BOC52_08315	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BOC52_08360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BOC52_08390	COG3104	oligopeptide transport
BOC52_08415	COG0601	transmembrane transport
BOC52_08420	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOC52_08430	COG4608	Belongs to the ABC transporter superfamily
BOC52_08460	COG2610	gluconate transmembrane transporter activity
BOC52_08485	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOC52_08515	COG0179	Fumarylacetoacetate (FAA) hydrolase
BOC52_08520	COG1304	FMN binding
BOC52_08525	COG0583	DNA-binding transcription factor activity
BOC52_08535	COG0477	Major facilitator Superfamily
BOC52_08555	COG1104	cysteine desulfurase activity
BOC52_08560	COG0477	Major facilitator Superfamily
BOC52_08585	COG0583	DNA-binding transcription factor activity
BOC52_08590	COG3048	D-serine ammonia-lyase activity
BOC52_08600	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_08730	COG3501	Rhs element vgr protein
BOC52_08845	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BOC52_08865	COG1609	Transcriptional regulator
BOC52_08885	COG1653	transport
BOC52_08895	COG0395	ABC-type sugar transport system, permease component
BOC52_08920	COG3436	PFAM IS66 Orf2 family protein
BOC52_08930	COG3012	SEC-C Motif Domain Protein
BOC52_08945	COG3386	PFAM SMP-30 Gluconolaconase
BOC52_08950	COG2186	Transcriptional regulator
BOC52_08980	COG1301	dicarboxylic acid transport
BOC52_09010	COG4804	nuclease activity
BOC52_09040	COG3209	COG3209 Rhs family protein
BOC52_09135	COG1022	Amp-dependent synthetase and ligase
BOC52_09145	COG3246	L-lysine catabolic process to acetate
BOC52_09160	COG1960	acyl-CoA dehydrogenase activity
BOC52_09165	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BOC52_09170	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_09180	COG1960	acyl-CoA dehydrogenase activity
BOC52_09200	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOC52_09260	COG1253	flavin adenine dinucleotide binding
BOC52_09265	COG0583	DNA-binding transcription factor activity
BOC52_09300	COG1215	transferase activity, transferring glycosyl groups
BOC52_09330	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BOC52_09410	COG0504	CTP synthase activity
BOC52_09495	COG1404	Belongs to the peptidase S8 family
BOC52_09505	COG2936	dipeptidyl-peptidase activity
BOC52_09510	COG1573	uracil-dna glycosylase
BOC52_09650	COG3706	GGDEF domain
BOC52_09650	COG0745	RESPONSE REGULATOR receiver
BOC52_09665	COG0596	Alpha beta hydrolase
BOC52_09700	COG0625	glutathione transferase activity
BOC52_09720	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BOC52_09725	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BOC52_09755	COG0295	cytidine deaminase activity
BOC52_09765	COG2823	Periplasmic or secreted lipoprotein
BOC52_09780	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BOC52_09785	COG0280	phosphate acetyltransferase
BOC52_09805	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BOC52_09820	COG0356	it plays a direct role in the translocation of protons across the membrane
BOC52_09830	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BOC52_09830	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BOC52_09835	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BOC52_09840	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BOC52_09865	COG0840	transmembrane signaling receptor activity
BOC52_09875	COG4191	Histidine kinase
BOC52_09875	COG0784	Response regulator, receiver
BOC52_09880	COG0842	Transport permease protein
BOC52_09885	COG0842	Transport permease protein
BOC52_09885	COG1129	ABC transporter
BOC52_09890	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_09905	COG0589	response to stress
BOC52_09920	COG1136	(ABC) transporter
BOC52_09945	COG0840	transmembrane signaling receptor activity
BOC52_09985	COG1611	Belongs to the LOG family
BOC52_10025	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOC52_10035	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_10045	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BOC52_10075	COG0833	amino acid
BOC52_10095	COG1335	isochorismatase
BOC52_10110	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_10115	COG0543	2 iron, 2 sulfur cluster binding
BOC52_10115	COG0633	Ferredoxin
BOC52_10120	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
BOC52_10125	COG4638	Rieske (2fe-2S)
BOC52_10135	COG0583	DNA-binding transcription factor activity
BOC52_10155	COG1902	pentaerythritol trinitrate reductase activity
BOC52_10155	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOC52_10180	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BOC52_10210	COG4638	Rieske (2fe-2S)
BOC52_10215	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
BOC52_10220	COG2146	nitrite reductase [NAD(P)H] activity
BOC52_10235	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOC52_10255	COG2733	membrane
BOC52_10260	COG0025	NhaP-type Na H and K H
BOC52_10270	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_10285	COG0642	Histidine kinase
BOC52_10290	COG0840	transmembrane signaling receptor activity
BOC52_10315	COG2201	protein-glutamate methylesterase activity
BOC52_10325	COG0038	chloride channel
BOC52_10360	COG4977	sequence-specific DNA binding
BOC52_10370	COG5265	(ABC) transporter
BOC52_10380	COG2837	iron assimilation
BOC52_10410	COG0583	DNA-binding transcription factor activity
BOC52_10435	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_10455	COG2130	NADP-dependent
BOC52_10485	COG0628	permease
BOC52_10515	COG3795	YCII-related domain
BOC52_10520	COG3795	YCII-related domain
BOC52_10530	COG4941	Belongs to the sigma-70 factor family
BOC52_10545	COG3023	N-Acetylmuramoyl-L-alanine amidase
BOC52_10550	COG1592	Rubrerythrin
BOC52_10555	COG0247	lactate metabolic process
BOC52_10580	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BOC52_10600	COG0489	protein tyrosine kinase activity
BOC52_10600	COG3206	protein involved in exopolysaccharide biosynthesis
BOC52_10620	COG0438	transferase activity, transferring glycosyl groups
BOC52_10625	COG0438	transferase activity, transferring glycosyl groups
BOC52_10650	COG5642	Protein of unknown function (DUF2384)
BOC52_10655	COG5654	RES domain protein
BOC52_10660	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BOC52_10700	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_10720	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BOC52_10725	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BOC52_10785	COG1304	FMN binding
BOC52_10805	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BOC52_10810	COG0352	thiamine-phosphate diphosphorylase activity
BOC52_10815	COG1253	flavin adenine dinucleotide binding
BOC52_10830	COG0583	DNA-binding transcription factor activity
BOC52_10855	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BOC52_10860	COG4149	molybdate abc transporter
BOC52_10865	COG0725	ABC transporter, periplasmic molybdate-binding protein
BOC52_10890	COG1764	response to oxidative stress
BOC52_10895	COG1846	Transcriptional regulator
BOC52_10920	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BOC52_10930	COG4695	Portal protein
BOC52_10955	COG1683	Conserved Protein
BOC52_10975	COG1611	Belongs to the LOG family
BOC52_10985	COG1252	NADH dehydrogenase
BOC52_11000	COG0412	Dienelactone hydrolase
BOC52_11025	COG0142	geranyltranstransferase activity
BOC52_11030	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BOC52_11045	COG2081	HI0933 family
BOC52_11070	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BOC52_11095	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BOC52_11100	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOC52_11140	COG3038	cytochrome b561
BOC52_11150	COG4774	siderophore transport
BOC52_11155	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BOC52_11175	COG3842	ATPase activity
BOC52_11185	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_11190	COG1177	transmembrane transport
BOC52_11250	COG2831	hemolysin activation secretion protein
BOC52_11255	COG3064	Membrane
BOC52_11255	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
BOC52_11255	COG3210	domain, Protein
BOC52_11260	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BOC52_11285	COG2188	Transcriptional regulator
BOC52_11295	COG2009	succinate dehydrogenase
BOC52_11305	COG1053	succinate dehydrogenase
BOC52_11310	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BOC52_11315	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BOC52_11320	COG0372	Belongs to the citrate synthase family
BOC52_11350	COG1522	sequence-specific DNA binding
BOC52_11390	COG0473	3-isopropylmalate dehydrogenase activity
BOC52_11415	COG0135	phosphoribosylanthranilate isomerase activity
BOC52_11420	COG0133	tryptophan synthase activity
BOC52_11435	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BOC52_11440	COG0285	dihydrofolate synthase activity
BOC52_11475	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BOC52_11480	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
BOC52_11485	COG2755	lipolytic protein G-D-S-L family
BOC52_11485	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BOC52_11505	COG0438	transferase activity, transferring glycosyl groups
BOC52_11525	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BOC52_11535	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BOC52_11535	COG2755	lipolytic protein G-D-S-L family
BOC52_11560	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_11565	COG1295	ribonuclease BN
BOC52_11585	COG3608	succinylglutamate desuccinylase aspartoacylase
BOC52_11615	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BOC52_11620	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BOC52_11625	COG1126	abc transporter atp-binding protein
BOC52_11655	COG0243	molybdopterin cofactor binding
BOC52_11655	COG3383	formate dehydrogenase (NAD+) activity
BOC52_11660	COG3383	formate dehydrogenase (NAD+) activity
BOC52_11660	COG0243	molybdopterin cofactor binding
BOC52_11665	COG0437	4 iron, 4 sulfur cluster binding
BOC52_11670	COG2864	formate dehydrogenase
BOC52_11680	COG1921	L-seryl-tRNASec selenium transferase activity
BOC52_11685	COG3276	selenocysteine insertion sequence binding
BOC52_11885	COG2963	transposase activity
BOC52_11935	COG4695	Portal protein
BOC52_12105	COG0154	amidase activity
BOC52_12200	COG4191	Histidine kinase
BOC52_12210	COG2814	Major facilitator Superfamily
BOC52_12225	COG0583	DNA-binding transcription factor activity
BOC52_12235	COG2030	dehydratase
BOC52_12240	COG0427	acetyl-CoA hydrolase
BOC52_12245	COG0028	Belongs to the TPP enzyme family
BOC52_12350	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BOC52_12355	COG4789	Type iii secretion
BOC52_12370	COG4790	Type iii secretion
BOC52_12375	COG4794	Type iii secretion
BOC52_12410	COG2207	Transcriptional regulator
BOC52_12590	COG3550	peptidyl-serine autophosphorylation
BOC52_12615	COG1215	transferase activity, transferring glycosyl groups
BOC52_12620	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BOC52_12625	COG0457	Tetratricopeptide repeat
BOC52_12645	COG1215	transferase activity, transferring glycosyl groups
BOC52_12650	COG2194	sulfuric ester hydrolase activity
BOC52_12660	COG2175	clavaminate synthase activity
BOC52_12670	COG4521	taurine ABC transporter
BOC52_12675	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BOC52_12680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BOC52_12705	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_12725	COG0306	phosphate transporter
BOC52_12735	COG1522	sequence-specific DNA binding
BOC52_12740	COG1280	lysine exporter protein (LysE YggA)
BOC52_12775	COG0477	Major facilitator Superfamily
BOC52_12895	COG4789	Type iii secretion
BOC52_12905	COG1157	protein secretion by the type III secretion system
BOC52_12925	COG4790	Type iii secretion
BOC52_12960	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOC52_12975	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOC52_12980	COG0741	lytic transglycosylase activity
BOC52_13200	COG5295	Hep Hag repeat protein
BOC52_13215	COG3023	N-Acetylmuramoyl-L-alanine amidase
BOC52_13250	COG5564	TIM-barrel signal transduction protein
BOC52_13255	COG5441	Belongs to the UPF0261 family
BOC52_13295	COG1063	alcohol dehydrogenase
BOC52_13300	COG4948	Mandelate Racemase Muconate Lactonizing
BOC52_13310	COG0246	Mannitol dehydrogenase
BOC52_13320	COG2271	Major facilitator Superfamily
BOC52_13330	COG1349	DNA-binding transcription factor activity
BOC52_13360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOC52_13375	COG0583	DNA-binding transcription factor activity
BOC52_13390	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_13395	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_13400	COG1477	protein flavinylation
BOC52_13425	COG0745	RESPONSE REGULATOR receiver
BOC52_13445	COG2271	Major facilitator Superfamily
BOC52_13485	COG4638	Rieske (2fe-2S)
BOC52_13530	COG1960	acyl-CoA dehydrogenase activity
BOC52_13535	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BOC52_13570	COG5295	Hep Hag repeat protein
BOC52_13570	COG5295	Hep Hag repeat protein
BOC52_13600	COG0798	PFAM Bile acid sodium symporter
BOC52_13615	COG0640	Transcriptional regulator
BOC52_13650	COG4175	Glycine betaine
BOC52_13700	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BOC52_13705	COG3622	Belongs to the hyi family
BOC52_13710	COG2271	Major facilitator Superfamily
BOC52_13715	COG0235	Class ii aldolase
BOC52_13720	COG3395	kinase activity
BOC52_13725	COG2084	Dehydrogenase
BOC52_13730	COG2186	Transcriptional regulator
BOC52_13810	COG4789	Type iii secretion
BOC52_13815	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BOC52_13860	COG2207	Transcriptional regulator
BOC52_13910	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BOC52_13940	COG1285	pathogenesis
BOC52_13955	COG1271	oxidase subunit
BOC52_13960	COG1294	oxidase, subunit
BOC52_14005	COG1760	l-serine dehydratase
BOC52_14020	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOC52_14020	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BOC52_14060	COG1278	Cold shock
BOC52_14090	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOC52_14105	COG4251	negative regulation of phosphorylation
BOC52_14110	COG0784	Response regulator, receiver
BOC52_14175	COG2814	Major facilitator Superfamily
BOC52_14195	COG1566	PFAM secretion protein HlyD family protein
BOC52_14210	COG1505	serine-type exopeptidase activity
BOC52_14225	COG1045	serine acetyltransferase
BOC52_14235	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOC52_14240	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BOC52_14245	COG3038	cytochrome b561
BOC52_14255	COG0640	Transcriptional regulator
BOC52_14260	COG2391	methyltransferase activity
BOC52_14270	COG0456	acetyltransferase
BOC52_14290	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BOC52_14295	COG1858	cytochrome C peroxidase
BOC52_14315	COG2188	Transcriptional regulator
BOC52_14370	COG0277	FAD linked oxidase domain protein
BOC52_14380	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BOC52_14390	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BOC52_14425	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BOC52_14440	COG4172	Belongs to the ABC transporter superfamily
BOC52_14450	COG0747	negative chemotaxis
BOC52_14455	COG0601	transmembrane transport
BOC52_14460	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOC52_14475	COG3485	protocatechuate 3,4-dioxygenase
BOC52_14480	COG3485	protocatechuate 3,4-dioxygenase
BOC52_14485	COG0583	DNA-binding transcription factor activity
BOC52_14515	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BOC52_14535	COG0531	amino acid
BOC52_14545	COG1201	RNA secondary structure unwinding
BOC52_14590	COG2274	protein secretion by the type I secretion system
BOC52_14630	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BOC52_14660	COG1739	Uncharacterized protein family UPF0029
BOC52_14680	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_14720	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_14780	COG1979	alcohol dehydrogenase
BOC52_14785	COG2130	NADP-dependent
BOC52_14820	COG0583	DNA-binding transcription factor activity
BOC52_14835	COG0583	DNA-binding transcription factor activity
BOC52_14840	COG0477	Major facilitator Superfamily
BOC52_14880	COG0302	gtp cyclohydrolase
BOC52_14890	COG1116	anion transmembrane transporter activity
BOC52_14890	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BOC52_14895	COG3707	response regulator
BOC52_14915	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOC52_14920	COG2146	nitrite reductase [NAD(P)H] activity
BOC52_14925	COG0243	molybdopterin cofactor binding
BOC52_14960	COG1070	Carbohydrate kinase
BOC52_14970	COG3842	ATPase activity
BOC52_14975	COG1063	alcohol dehydrogenase
BOC52_15010	COG2223	nitrite transmembrane transporter activity
BOC52_15015	COG1349	DNA-binding transcription factor activity
BOC52_15070	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BOC52_15070	COG4651	solute:proton antiporter activity
BOC52_15085	COG0142	geranyltranstransferase activity
BOC52_15110	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_15135	COG0840	transmembrane signaling receptor activity
BOC52_15155	COG0352	thiamine-phosphate diphosphorylase activity
BOC52_15160	COG0477	Major facilitator Superfamily
BOC52_15185	COG2801	Transposase and inactivated derivatives
BOC52_15215	COG3328	transposase activity
BOC52_15240	COG0540	Belongs to the ATCase OTCase family
BOC52_15260	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOC52_15320	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BOC52_15390	COG0475	glutathione-regulated potassium exporter activity
BOC52_15410	COG0339	signal peptide processing
BOC52_15415	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_15440	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BOC52_15480	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOC52_15500	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
BOC52_15530	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOC52_15555	COG3851	Histidine kinase
BOC52_15565	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
BOC52_15570	COG1140	nitrate reductase beta subunit
BOC52_15575	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
BOC52_15580	COG2181	nitrate reductase activity
BOC52_15585	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BOC52_15625	COG0651	ATP synthesis coupled electron transport
BOC52_15630	COG0650	Formate hydrogenlyase subunit 4
BOC52_15640	COG0651	ATP synthesis coupled electron transport
BOC52_15645	COG0649	NAD binding
BOC52_15650	COG3260	NADH ubiquinone oxidoreductase 20
BOC52_15705	COG1695	Transcriptional regulator
BOC52_15710	COG0446	pyridine nucleotide-disulphide oxidoreductase
BOC52_15710	COG1902	pentaerythritol trinitrate reductase activity
BOC52_15755	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BOC52_15755	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BOC52_15760	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BOC52_15775	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BOC52_15785	COG1538	Outer membrane efflux protein
BOC52_15790	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_15795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_15960	COG0443	Heat shock 70 kDa protein
BOC52_16000	COG0686	Belongs to the AlaDH PNT family
BOC52_16085	COG2271	Major facilitator Superfamily
BOC52_16095	COG1960	acyl-CoA dehydrogenase activity
BOC52_16130	COG1129	ABC transporter
BOC52_16135	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_16140	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_16145	COG4774	siderophore transport
BOC52_16150	COG3712	iron ion homeostasis
BOC52_16155	COG1595	DNA-templated transcription, initiation
BOC52_16175	COG2353	YceI-like domain
BOC52_16205	COG0179	Fumarylacetoacetate (FAA) hydrolase
BOC52_16230	COG0387	Pfam Sodium calcium exchanger
BOC52_16240	COG0583	DNA-binding transcription factor activity
BOC52_16280	COG4221	oxidoreductase activity
BOC52_16280	COG3321	synthase
BOC52_16280	COG0300	oxidoreductase activity
BOC52_16280	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOC52_16290	COG4221	oxidoreductase activity
BOC52_16290	COG0300	oxidoreductase activity
BOC52_16290	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOC52_16290	COG3321	synthase
BOC52_16295	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_16295	COG4221	oxidoreductase activity
BOC52_16295	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BOC52_16295	COG3321	synthase
BOC52_16300	COG0475	glutathione-regulated potassium exporter activity
BOC52_16300	COG0569	domain protein
BOC52_16315	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BOC52_16320	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_16325	COG4974	Belongs to the 'phage' integrase family
BOC52_16335	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BOC52_16340	COG0802	atpase or kinase
BOC52_16345	COG0860	N-Acetylmuramoyl-L-alanine amidase
BOC52_16355	COG1741	Belongs to the pirin family
BOC52_16360	COG3118	belongs to the thioredoxin family
BOC52_16370	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BOC52_16380	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BOC52_16395	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BOC52_16405	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BOC52_16410	COG1522	sequence-specific DNA binding
BOC52_16430	COG2271	Major facilitator Superfamily
BOC52_16440	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BOC52_16445	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_16455	COG0583	DNA-binding transcription factor activity
BOC52_16460	COG0246	Mannitol dehydrogenase
BOC52_16465	COG1070	Carbohydrate kinase
BOC52_16470	COG2390	Transcriptional regulator
BOC52_16485	COG0583	DNA-binding transcription factor activity
BOC52_16505	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOC52_16515	COG1175	transmembrane transport
BOC52_16530	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOC52_16540	COG0735	belongs to the Fur family
BOC52_16550	COG1121	(ABC) transporter
BOC52_16555	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BOC52_16560	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BOC52_16575	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOC52_16580	COG2233	PERMEase
BOC52_16590	COG1538	Outer membrane efflux protein
BOC52_16595	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_16600	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_16630	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BOC52_16645	COG0745	RESPONSE REGULATOR receiver
BOC52_16680	COG0009	L-threonylcarbamoyladenylate synthase
BOC52_16685	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BOC52_16690	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BOC52_16695	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BOC52_16705	COG0469	pyruvate kinase activity
BOC52_16715	COG0126	phosphoglycerate kinase activity
BOC52_16740	COG0859	PFAM glycosyl transferase family 9
BOC52_16750	COG0429	hydrolase of the alpha beta-hydrolase fold
BOC52_16760	COG4783	chaperone-mediated protein folding
BOC52_16790	COG3307	-O-antigen
BOC52_16795	COG4969	Belongs to the N-Me-Phe pilin family
BOC52_16800	COG0861	Integral membrane protein TerC family
BOC52_16805	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BOC52_16820	COG2137	regulation of response to DNA damage stimulus
BOC52_16825	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BOC52_16835	COG0642	Histidine kinase
BOC52_16860	COG2801	Transposase and inactivated derivatives
BOC52_16895	COG0784	Response regulator, receiver
BOC52_16895	COG5002	protein histidine kinase activity
BOC52_16900	COG0583	DNA-binding transcription factor activity
BOC52_16950	COG0028	Belongs to the TPP enzyme family
BOC52_16955	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BOC52_16960	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BOC52_17020	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BOC52_17045	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
BOC52_17050	COG0583	DNA-binding transcription factor activity
BOC52_17055	COG1301	dicarboxylic acid transport
BOC52_17070	COG0840	transmembrane signaling receptor activity
BOC52_17115	COG4948	Mandelate Racemase Muconate Lactonizing
BOC52_17145	COG0513	Belongs to the DEAD box helicase family
BOC52_17190	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOC52_17195	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BOC52_17210	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BOC52_17215	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BOC52_17220	COG0367	asparagine synthase
BOC52_17235	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOC52_17245	COG1396	sequence-specific DNA binding
BOC52_17250	COG2814	Major facilitator Superfamily
BOC52_17255	COG0583	DNA-binding transcription factor activity
BOC52_17270	COG1702	phosphate starvation-inducible protein PhoH
BOC52_17285	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
BOC52_17295	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BOC52_17305	COG0751	glycine-tRNA ligase activity
BOC52_17310	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BOC52_17315	COG0204	Acyl-transferase
BOC52_17340	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BOC52_17350	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BOC52_17355	COG3178	'Phosphotransferase
BOC52_17360	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BOC52_17370	COG5265	(ABC) transporter
BOC52_17380	COG1607	acyl-coa hydrolase
BOC52_17390	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BOC52_17395	COG1024	Enoyl-CoA hydratase
BOC52_17400	COG0183	Belongs to the thiolase family
BOC52_17405	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOC52_17405	COG1024	Enoyl-CoA hydratase
BOC52_17410	COG1960	acyl-CoA dehydrogenase activity
BOC52_17425	COG0494	nUDIX hydrolase
BOC52_17500	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BOC52_17510	COG0251	oxidation-reduction process
BOC52_17520	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
BOC52_17545	COG0477	Major facilitator Superfamily
BOC52_17585	COG1596	polysaccharide export
BOC52_17590	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BOC52_17610	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOC52_17620	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BOC52_17640	COG2204	response regulator
BOC52_17680	COG5002	protein histidine kinase activity
BOC52_17680	COG5001	Diguanylate cyclase
BOC52_17690	COG0235	Class ii aldolase
BOC52_17750	COG0142	geranyltranstransferase activity
BOC52_17835	COG0629	single-stranded DNA binding
BOC52_17840	COG2814	Major facilitator Superfamily
BOC52_17870	COG1280	lysine exporter protein (LysE YggA)
BOC52_17895	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BOC52_17910	COG1137	ATPase activity
BOC52_17915	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BOC52_17925	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BOC52_17940	COG1660	Displays ATPase and GTPase activities
BOC52_17955	COG1194	a g-specific adenine glycosylase
BOC52_17970	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BOC52_17985	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BOC52_18005	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BOC52_18020	COG0742	ribosomal rna small subunit methyltransferase
BOC52_18030	COG0625	glutathione transferase activity
BOC52_18040	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOC52_18050	COG0243	molybdopterin cofactor binding
BOC52_18055	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BOC52_18070	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BOC52_18080	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BOC52_18085	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BOC52_18100	COG1294	oxidase, subunit
BOC52_18125	COG1263	PTS System
BOC52_18125	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BOC52_18125	COG2190	(PTS) system
BOC52_18130	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOC52_18130	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BOC52_18135	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BOC52_18140	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BOC52_18145	COG2188	Transcriptional regulator
BOC52_18155	COG0583	DNA-binding transcription factor activity
BOC52_18200	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_18210	COG1960	acyl-CoA dehydrogenase activity
BOC52_18220	COG2226	methyltransferase
BOC52_18230	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
BOC52_18255	COG2814	Major facilitator Superfamily
BOC52_18265	COG0587	DNA-directed DNA polymerase activity
BOC52_18280	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
BOC52_18310	COG0840	transmembrane signaling receptor activity
BOC52_18320	COG1999	signal sequence binding
BOC52_18330	COG1612	heme a metabolic process
BOC52_18360	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BOC52_18370	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BOC52_18385	COG2226	methyltransferase
BOC52_18390	COG1040	competence protein
BOC52_18400	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BOC52_18420	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BOC52_18430	COG0793	Belongs to the peptidase S41A family
BOC52_18435	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BOC52_18445	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BOC52_18450	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOC52_18460	COG0189	ligase activity
BOC52_18470	COG0004	ammonium transporteR
BOC52_18480	COG2960	long-chain fatty acid transporting porin activity
BOC52_18520	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BOC52_18530	COG4191	Histidine kinase
BOC52_18540	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BOC52_18550	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BOC52_18555	COG1960	acyl-CoA dehydrogenase activity
BOC52_18560	COG1960	acyl-CoA dehydrogenase activity
BOC52_18565	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOC52_18565	COG1024	Enoyl-CoA hydratase
BOC52_18570	COG0583	DNA-binding transcription factor activity
BOC52_18580	COG0405	Gamma-glutamyltransferase
BOC52_18605	COG0583	DNA-binding transcription factor activity
BOC52_18610	COG2921	Belongs to the UPF0250 family
BOC52_18620	COG1686	Belongs to the peptidase S11 family
BOC52_18655	COG1127	ABC transporter
BOC52_18660	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BOC52_18665	COG0737	Belongs to the 5'-nucleotidase family
BOC52_18680	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BOC52_18745	COG0582	viral genome integration into host DNA
BOC52_18750	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BOC52_18775	COG1024	Enoyl-CoA hydratase
BOC52_18830	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BOC52_18835	COG4221	oxidoreductase activity
BOC52_18840	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_18860	COG0747	negative chemotaxis
BOC52_18885	COG0288	reversible hydration of carbon dioxide
BOC52_18890	COG0183	Belongs to the thiolase family
BOC52_18900	COG3012	SEC-C Motif Domain Protein
BOC52_18920	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BOC52_18950	COG1785	Belongs to the alkaline phosphatase family
BOC52_18960	COG2200	EAL domain
BOC52_18960	COG2199	diguanylate cyclase activity
BOC52_18965	COG0025	NhaP-type Na H and K H
BOC52_19040	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BOC52_19060	COG1999	signal sequence binding
BOC52_19095	COG3511	phospholipase C
BOC52_19115	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BOC52_19145	COG0596	Alpha beta hydrolase
BOC52_19160	COG0583	DNA-binding transcription factor activity
BOC52_19165	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_19185	COG0840	transmembrane signaling receptor activity
BOC52_19190	COG1609	Transcriptional regulator
BOC52_19245	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BOC52_19250	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BOC52_19265	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_19270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_19290	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BOC52_19295	COG1704	LemA family
BOC52_19420	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_19435	COG2824	Alkylphosphonate utilization operon protein PhnA
BOC52_19460	COG0583	DNA-binding transcription factor activity
BOC52_19470	COG2233	PERMEase
BOC52_19480	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BOC52_19485	COG1256	bacterial-type flagellum assembly
BOC52_19490	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
BOC52_19500	COG1706	bacterial-type flagellum-dependent cell motility
BOC52_19505	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BOC52_19510	COG4786	Flagellar basal body rod
BOC52_19520	COG1749	Flagellar hook protein flgE
BOC52_19525	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BOC52_19530	COG1558	bacterial-type flagellum-dependent cell motility
BOC52_19535	COG1815	bacterial-type flagellum-dependent cell motility
BOC52_19545	COG2747	anti-sigma28 factor FlgM
BOC52_19585	COG0741	lytic transglycosylase activity
BOC52_19590	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BOC52_19600	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BOC52_19605	COG1984	allophanate hydrolase subunit 2
BOC52_19610	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BOC52_19640	COG4608	Belongs to the ABC transporter superfamily
BOC52_19645	COG0444	Belongs to the ABC transporter superfamily
BOC52_19650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BOC52_19655	COG0601	transmembrane transport
BOC52_19660	COG0747	negative chemotaxis
BOC52_19670	COG0477	Major facilitator Superfamily
BOC52_19680	COG0579	oxidoreductase
BOC52_19700	COG3568	Endonuclease Exonuclease Phosphatase
BOC52_19705	COG1280	lysine exporter protein (LysE YggA)
BOC52_19725	COG0531	amino acid
BOC52_19740	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BOC52_19770	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BOC52_19800	COG1960	acyl-CoA dehydrogenase activity
BOC52_19815	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BOC52_19825	COG2814	Major facilitator Superfamily
BOC52_19845	COG0667	Aldo Keto reductase
BOC52_19875	COG1560	Kdo2-lipid A biosynthetic process
BOC52_19890	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BOC52_19900	COG0523	cobalamin synthesis protein
BOC52_19910	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BOC52_19920	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BOC52_19930	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BOC52_19955	COG1309	transcriptional regulator
BOC52_19970	COG2814	Major facilitator Superfamily
BOC52_19980	COG2207	Transcriptional regulator
BOC52_19985	COG1064	alcohol dehydrogenase
BOC52_19995	COG0708	Exodeoxyribonuclease III
BOC52_20000	COG2326	polyphosphate kinase activity
BOC52_20020	COG1077	Cell shape determining protein MreB Mrl
BOC52_20035	COG0768	penicillin binding
BOC52_20040	COG0772	Belongs to the SEDS family
BOC52_20065	COG0720	synthase
BOC52_20070	COG0602	queuosine metabolic process
BOC52_20105	COG4695	Portal protein
BOC52_20350	COG2204	response regulator
BOC52_20355	COG5000	phosphorelay sensor kinase activity
BOC52_20390	COG0242	peptide deformylase activity
BOC52_20395	COG0758	DNA mediated transformation
BOC52_20410	COG0583	DNA-binding transcription factor activity
BOC52_20415	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOC52_20445	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BOC52_20450	COG3012	SEC-C Motif Domain Protein
BOC52_20455	COG4372	Transposase
BOC52_20460	COG3436	PFAM IS66 Orf2 family protein
BOC52_20495	COG0583	DNA-binding transcription factor activity
BOC52_20525	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BOC52_20540	COG2169	Transcriptional regulator
BOC52_20540	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BOC52_20555	COG4681	YaeQ
BOC52_20570	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BOC52_20655	COG0582	viral genome integration into host DNA
BOC52_20695	COG0592	DNA-directed DNA polymerase activity
BOC52_20735	COG1475	DNA binding
BOC52_20760	COG0753	catalase activity
BOC52_20810	COG1024	Enoyl-CoA hydratase
BOC52_20810	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOC52_20815	COG0183	Belongs to the thiolase family
BOC52_20825	COG1960	acyl-CoA dehydrogenase activity
BOC52_20855	COG1695	Transcriptional regulator
BOC52_20930	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_20955	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_20970	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BOC52_20980	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BOC52_20990	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BOC52_20990	COG4106	trans-aconitate 2-methyltransferase activity
BOC52_20995	COG0789	Transcriptional regulator
BOC52_21005	COG1987	bacterial-type flagellum assembly
BOC52_21020	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BOC52_21040	COG1346	cytolysis
BOC52_21050	COG0583	DNA-binding transcription factor activity
BOC52_21055	COG2814	Major facilitator Superfamily
BOC52_21060	COG1846	Transcriptional regulator
BOC52_21105	COG2165	general secretion pathway protein
BOC52_21145	COG0523	cobalamin synthesis protein
BOC52_21190	COG0519	Catalyzes the synthesis of GMP from XMP
BOC52_21190	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BOC52_21195	COG1902	pentaerythritol trinitrate reductase activity
BOC52_21215	COG0642	Histidine kinase
BOC52_21235	COG2154	pterin-4-alpha-carbinolamine dehydratase
BOC52_21240	COG3186	Phenylalanine-4-hydroxylase
BOC52_21245	COG1522	sequence-specific DNA binding
BOC52_21260	COG0583	DNA-binding transcription factor activity
BOC52_21285	COG0411	ABC transporter
BOC52_21300	COG0559	Belongs to the binding-protein-dependent transport system permease family
BOC52_21325	COG0411	ABC transporter
BOC52_21340	COG0357	Ribosomal RNA small subunit methyltransferase G
BOC52_21345	COG1192	Involved in chromosome partitioning
BOC52_21350	COG1475	DNA binding
BOC52_21355	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BOC52_21365	COG0356	it plays a direct role in the translocation of protons across the membrane
BOC52_21405	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_21420	COG1832	CoA-binding protein
BOC52_21440	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BOC52_21460	COG0506	proline dehydrogenase activity
BOC52_21460	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BOC52_21460	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BOC52_21480	COG1960	acyl-CoA dehydrogenase activity
BOC52_21500	COG0436	Aminotransferase
BOC52_21515	COG0277	FAD linked oxidase domain protein
BOC52_21525	COG0789	Transcriptional regulator
BOC52_21550	COG0668	transmembrane transport
BOC52_21570	COG0531	amino acid
BOC52_21575	COG4303	Ethanolamine ammonia lyase large subunit
BOC52_21580	COG4302	ethanolamine ammonia-lyase activity
BOC52_21590	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_21615	COG1760	l-serine dehydratase
BOC52_21635	COG0509	glycine decarboxylation via glycine cleavage system
BOC52_21650	COG0673	inositol 2-dehydrogenase activity
BOC52_21670	COG0210	DNA helicase
BOC52_21675	COG3245	cytochrome
BOC52_21695	COG0582	viral genome integration into host DNA
BOC52_21740	COG3397	chitin binding
BOC52_21765	COG2267	carboxylic ester hydrolase activity
BOC52_21840	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_21855	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BOC52_21900	COG0519	Catalyzes the synthesis of GMP from XMP
BOC52_21910	COG0561	phosphatase activity
BOC52_21915	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BOC52_21930	COG0438	transferase activity, transferring glycosyl groups
BOC52_21950	COG1360	Flagellar Motor Protein
BOC52_21955	COG2201	protein-glutamate methylesterase activity
BOC52_21965	COG0835	chemotaxis
BOC52_21975	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BOC52_21985	COG2201	protein-glutamate methylesterase activity
BOC52_21995	COG0745	RESPONSE REGULATOR receiver
BOC52_22000	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
BOC52_22020	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BOC52_22025	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BOC52_22040	COG1191	sigma factor activity
BOC52_22050	COG1950	PFAM Membrane protein of
BOC52_22055	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BOC52_22065	COG0412	Dienelactone hydrolase
BOC52_22075	COG2070	2-Nitropropane dioxygenase
BOC52_22115	COG1522	sequence-specific DNA binding
BOC52_22125	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BOC52_22145	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BOC52_22150	COG2823	Periplasmic or secreted lipoprotein
BOC52_22165	COG1113	amino acid transport
BOC52_22210	COG2084	Dehydrogenase
BOC52_22215	COG1280	lysine exporter protein (LysE YggA)
BOC52_22220	COG2814	Major facilitator Superfamily
BOC52_22225	COG0583	DNA-binding transcription factor activity
BOC52_22235	COG3047	cAMP biosynthetic process
BOC52_22255	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BOC52_22270	COG1881	PFAM PEBP family protein
BOC52_22275	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BOC52_22310	COG1522	sequence-specific DNA binding
BOC52_22330	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BOC52_22335	COG2151	metal-sulfur cluster biosynthetic enzyme
BOC52_22340	COG3396	Phenylacetate-CoA oxygenase
BOC52_22345	COG3460	Phenylacetate-CoA oxygenase
BOC52_22350	COG3396	Phenylacetate-CoA oxygenase
BOC52_22395	COG2963	transposase activity
BOC52_22400	COG2801	Transposase and inactivated derivatives
BOC52_22430	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BOC52_22470	COG0514	ATP-dependent DNA helicase (RecQ)
BOC52_22485	COG0049	tRNA binding
BOC52_22490	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BOC52_22520	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BOC52_22555	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BOC52_22590	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BOC52_22605	COG0201	protein transport
BOC52_22650	COG4232	protein-disulfide reductase activity
BOC52_22660	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BOC52_22670	COG1333	cytochrome c biogenesis protein
BOC52_22675	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BOC52_22680	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BOC52_22685	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BOC52_22735	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BOC52_22745	COG0232	Belongs to the dGTPase family. Type 2 subfamily
BOC52_22755	COG1175	transmembrane transport
BOC52_22760	COG0395	ABC-type sugar transport system, permease component
BOC52_22765	COG3842	ATPase activity
BOC52_22770	COG0584	glycerophosphoryl diester phosphodiesterase
BOC52_22785	COG0067	glutamate synthase
BOC52_22785	COG0070	glutamate synthase
BOC52_22785	COG0069	glutamate synthase activity
BOC52_22795	COG1115	amino acid carrier protein
BOC52_22805	COG4178	(ABC) transporter
BOC52_22820	COG2022	thiamine diphosphate biosynthetic process
BOC52_22830	COG1127	ABC transporter
BOC52_22835	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BOC52_22840	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BOC52_22865	COG1131	(ABC) transporter
BOC52_22870	COG0842	Transport permease protein
BOC52_22895	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BOC52_22905	COG2095	MarC family integral membrane protein
BOC52_22910	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BOC52_22955	COG0805	protein transport
BOC52_22960	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BOC52_22965	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BOC52_22970	COG0723	plastoquinol--plastocyanin reductase activity
BOC52_22975	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BOC52_22980	COG2857	Cytochrome c1
BOC52_22985	COG0625	glutathione transferase activity
BOC52_22990	COG2969	positive regulation of protein catabolic process
BOC52_23175	COG0308	aminopeptidase N
BOC52_23250	COG0443	Heat shock 70 kDa protein
BOC52_23260	COG1278	Cold shock
BOC52_23265	COG0531	amino acid
BOC52_23270	COG3384	dioxygenase
BOC52_23280	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BOC52_23285	COG2890	protein-(glutamine-N5) methyltransferase activity
BOC52_23315	COG0006	proline dipeptidase activity
BOC52_23320	COG1335	isochorismatase
BOC52_23330	COG0488	(ABC) transporter
BOC52_23345	COG0584	glycerophosphoryl diester phosphodiesterase
BOC52_23385	COG0012	GTP binding
BOC52_23440	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOC52_23445	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BOC52_23455	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BOC52_23460	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BOC52_23480	COG0512	Glutamine amidotransferase of anthranilate synthase
BOC52_23495	COG0546	phosphoglycolate phosphatase activity
BOC52_23510	COG2967	ApaG domain
BOC52_23515	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BOC52_23525	COG2050	protein possibly involved in aromatic compounds catabolism
BOC52_23530	COG1024	Enoyl-CoA hydratase
BOC52_23535	COG0183	Belongs to the thiolase family
BOC52_23545	COG1024	Enoyl-CoA hydratase
BOC52_23585	COG0243	molybdopterin cofactor binding
BOC52_23590	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_23595	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_23615	COG3116	cell division
BOC52_23625	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BOC52_23630	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BOC52_23665	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BOC52_23680	COG0678	peroxiredoxin activity
BOC52_23710	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
BOC52_23720	COG0494	nUDIX hydrolase
BOC52_23725	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BOC52_23735	COG0237	dephospho-CoA kinase activity
BOC52_23740	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BOC52_23750	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BOC52_23755	COG4536	flavin adenine dinucleotide binding
BOC52_23765	COG0142	geranyltranstransferase activity
BOC52_23810	COG2095	MarC family integral membrane protein
BOC52_23820	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BOC52_23880	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BOC52_23895	COG0439	Biotin carboxylase
BOC52_23900	COG0511	ligase activity, forming carbon-carbon bonds
BOC52_23905	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BOC52_23910	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BOC52_23920	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BOC52_23925	COG3150	esterase
BOC52_23930	COG0557	exoribonuclease II activity
BOC52_23940	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BOC52_23960	COG1414	Transcriptional regulator
BOC52_23965	COG3734	2-keto-3-deoxy-galactonokinase
BOC52_23975	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_23990	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_23995	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_24005	COG0284	orotidine-5'-phosphate decarboxylase activity
BOC52_24010	COG1546	Belongs to the CinA family
BOC52_24015	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BOC52_24045	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BOC52_24055	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BOC52_24060	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BOC52_24065	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BOC52_24075	COG2814	Major facilitator Superfamily
BOC52_24090	COG0583	DNA-binding transcription factor activity
BOC52_24105	COG1301	dicarboxylic acid transport
BOC52_24110	COG4266	Belongs to the allantoicase family
BOC52_24115	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
BOC52_24120	COG0735	belongs to the Fur family
BOC52_24125	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOC52_24155	COG1466	dna polymerase III delta subunit
BOC52_24160	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BOC52_24175	COG0837	glucose binding
BOC52_24175	COG1737	Transcriptional regulator
BOC52_24190	COG0800	Aldolase
BOC52_24210	COG2223	nitrite transmembrane transporter activity
BOC52_24215	COG0583	DNA-binding transcription factor activity
BOC52_24225	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BOC52_24230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOC52_24235	COG0765	amino acid transport
BOC52_24240	COG0765	amino acid transport
BOC52_24245	COG1126	abc transporter atp-binding protein
BOC52_24290	COG0121	glutamine amidotransferase
BOC52_24300	COG0418	dihydroorotase activity
BOC52_24335	COG1917	Cupin 2, conserved barrel domain protein
BOC52_24335	COG4977	sequence-specific DNA binding
BOC52_24340	COG0625	glutathione transferase activity
BOC52_24345	COG0625	glutathione transferase activity
BOC52_24360	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BOC52_24370	COG0588	phosphoglycerate mutase activity
BOC52_24410	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BOC52_24415	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BOC52_24420	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOC52_24425	COG0006	proline dipeptidase activity
BOC52_24435	COG0625	glutathione transferase activity
BOC52_24440	COG0069	glutamate synthase activity
BOC52_24455	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BOC52_24460	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BOC52_24465	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BOC52_24525	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BOC52_24525	COG3008	intermembrane lipid transfer
BOC52_24530	COG2995	paraquat-inducible protein a
BOC52_24550	COG2353	YceI-like domain
BOC52_24555	COG2353	YceI-like domain
BOC52_24570	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BOC52_24575	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BOC52_24580	COG1862	Preprotein translocase
BOC52_24590	COG0343	queuine tRNA-ribosyltransferase activity
BOC52_24600	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BOC52_24605	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BOC52_24625	COG0783	Belongs to the Dps family
BOC52_24635	COG1733	regulation of RNA biosynthetic process
BOC52_24650	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
BOC52_24655	COG2188	Transcriptional regulator
BOC52_24665	COG3624	Phosphonate C-P lyase system protein PhnG
BOC52_24675	COG3626	phosphonate metabolism
BOC52_24680	COG3627	carbon phosphorus lyase activity
BOC52_24685	COG4107	phosphonate C-P lyase system protein PhnK
BOC52_24690	COG4778	phosphonate C-P lyase system protein PhnL
BOC52_24695	COG3454	Phosphonate metabolism
BOC52_24700	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
BOC52_24705	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
BOC52_24710	COG3639	organic phosphonate transmembrane transporter activity
BOC52_24735	COG0247	lactate metabolic process
BOC52_24740	COG0277	FAD linked oxidase domain protein
BOC52_24745	COG0277	FAD linked oxidase domain protein
BOC52_24750	COG0277	FAD linked oxidase domain protein
BOC52_24755	COG2096	Adenosyltransferase
BOC52_24760	COG1017	nitric oxide dioxygenase activity
BOC52_24760	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BOC52_24770	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BOC52_24780	COG0312	modulator of DNA gyrase
BOC52_24785	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BOC52_24790	COG3164	Protein of unknown function
BOC52_24795	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BOC52_24800	COG0497	DNA recombination
BOC52_24805	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BOC52_24845	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BOC52_24855	COG1428	Deoxynucleoside kinase
BOC52_24865	COG0617	tRNA 3'-terminal CCA addition
BOC52_24875	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BOC52_24900	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BOC52_24905	COG0586	Pfam SNARE associated Golgi protein
BOC52_25000	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BOC52_25010	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BOC52_25025	COG1368	sulfuric ester hydrolase activity
BOC52_25035	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BOC52_25040	COG0156	8-amino-7-oxononanoate synthase activity
BOC52_25095	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BOC52_25100	COG0489	protein tyrosine kinase activity
BOC52_25100	COG3206	protein involved in exopolysaccharide biosynthesis
BOC52_25110	COG3562	capsule polysaccharide
BOC52_25115	COG1045	serine acetyltransferase
BOC52_25130	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BOC52_25135	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BOC52_25140	COG0517	IMP dehydrogenase activity
BOC52_25140	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BOC52_25170	COG2885	chlorophyll binding
BOC52_25195	COG0824	Thioesterase
BOC52_25200	COG4221	oxidoreductase activity
BOC52_25210	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BOC52_25260	COG0450	alkyl hydroperoxide reductase
BOC52_25270	COG1960	acyl-CoA dehydrogenase activity
BOC52_25300	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BOC52_25310	COG2814	Major facilitator Superfamily
BOC52_25340	COG2814	Major facilitator Superfamily
BOC52_25345	COG0778	Nitroreductase
BOC52_25350	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOC52_25355	COG0583	DNA-binding transcription factor activity
BOC52_25365	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BOC52_25400	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BOC52_25415	COG4774	siderophore transport
BOC52_25420	COG1120	ATPase activity
BOC52_25430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BOC52_25470	COG0730	response to heat
BOC52_25485	COG0584	glycerophosphoryl diester phosphodiesterase
BOC52_25490	COG1280	lysine exporter protein (LysE YggA)
BOC52_25550	COG0604	alcohol dehydrogenase
BOC52_25555	COG1733	regulation of RNA biosynthetic process
BOC52_25570	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BOC52_25590	COG1773	rubredoxin
BOC52_25600	COG1678	Uncharacterized ACR, COG1678
BOC52_25610	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BOC52_25685	COG1215	transferase activity, transferring glycosyl groups
BOC52_25700	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BOC52_25715	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BOC52_25745	COG0859	PFAM glycosyl transferase family 9
BOC52_25800	COG1129	ABC transporter
BOC52_25810	COG0559	Belongs to the binding-protein-dependent transport system permease family
BOC52_25835	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BOC52_25845	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BOC52_25940	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOC52_25945	COG2226	methyltransferase
BOC52_25970	COG0762	integral membrane protein
BOC52_26030	COG0436	Aminotransferase
BOC52_26060	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BOC52_26060	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BOC52_26085	COG2814	Major facilitator Superfamily
BOC52_26100	COG1126	abc transporter atp-binding protein
BOC52_26110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOC52_26125	COG0363	glucosamine-6-phosphate deaminase activity
BOC52_26130	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BOC52_26145	COG0395	ABC-type sugar transport system, permease component
BOC52_26150	COG3842	ATPase activity
BOC52_26155	COG2860	membrane
BOC52_26160	COG1193	negative regulation of DNA recombination
BOC52_26165	COG0492	ferredoxin-NADP+ reductase activity
BOC52_26175	COG1674	ftsk spoiiie
BOC52_26180	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BOC52_26190	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BOC52_26315	COG3501	Rhs element vgr protein
BOC52_26360	COG3436	PFAM IS66 Orf2 family protein
BOC52_26365	COG4372	Transposase
BOC52_26370	COG3012	SEC-C Motif Domain Protein
BOC52_26385	COG0582	viral genome integration into host DNA
BOC52_26390	COG2801	Transposase and inactivated derivatives
BOC52_26420	COG2894	cell division
BOC52_26440	COG0859	PFAM glycosyl transferase family 9
BOC52_26450	COG0477	Major facilitator Superfamily
BOC52_26485	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BOC52_26490	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BOC52_26500	COG1561	YicC-like family, N-terminal region
BOC52_26505	COG0194	GDP metabolic process
BOC52_26515	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BOC52_26540	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_26550	COG1278	Cold shock
BOC52_26555	COG2176	DNA-directed DNA polymerase activity
BOC52_26635	COG0583	DNA-binding transcription factor activity
BOC52_26645	COG0308	aminopeptidase N
BOC52_26660	COG2119	membrane
BOC52_26670	COG0402	S-adenosylhomocysteine deaminase activity
BOC52_26675	COG2252	PERMEase
BOC52_26680	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BOC52_26695	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BOC52_26700	COG0154	amidase activity
BOC52_26705	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BOC52_26740	COG3383	formate dehydrogenase (NAD+) activity
BOC52_26755	COG1910	domain protein
BOC52_26765	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BOC52_26775	COG0546	phosphoglycolate phosphatase activity
BOC52_26780	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BOC52_26805	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BOC52_26810	COG0077	Prephenate dehydratase
BOC52_26810	COG1605	Chorismate mutase
BOC52_26820	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BOC52_26845	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BOC52_26855	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
BOC52_26880	COG2951	lytic endotransglycosylase activity
BOC52_26885	COG0123	including yeast histone deacetylase and acetoin utilization protein
BOC52_26895	COG2267	carboxylic ester hydrolase activity
BOC52_26900	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BOC52_26905	COG2011	ABC-type metal ion transport system permease component
BOC52_26925	COG1960	acyl-CoA dehydrogenase activity
BOC52_26935	COG1522	sequence-specific DNA binding
BOC52_27010	COG0501	Belongs to the peptidase M48B family
BOC52_27020	COG0521	Mo-molybdopterin cofactor biosynthetic process
BOC52_27025	COG3028	Belongs to the UPF0307 family
BOC52_27035	COG0312	modulator of DNA gyrase
BOC52_27045	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BOC52_27050	COG2204	response regulator
BOC52_27080	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BOC52_27090	COG0640	Transcriptional regulator
BOC52_27105	COG1607	acyl-coa hydrolase
BOC52_27110	COG0114	fumarate hydratase activity
BOC52_27125	COG0534	Mate efflux family protein
BOC52_27130	COG2501	S4 domain
BOC52_27155	COG3045	CreA protein
BOC52_27170	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BOC52_27180	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BOC52_27200	COG1322	Protein conserved in bacteria
BOC52_27215	COG0303	'Molybdopterin
BOC52_27225	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BOC52_27230	COG1530	ribonuclease E activity
BOC52_27245	COG0546	phosphoglycolate phosphatase activity
BOC52_27265	COG0424	maF-like protein
BOC52_27270	COG1399	metal-binding, possibly nucleic acid-binding protein
BOC52_27305	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BOC52_27325	COG3026	antisigma factor binding
BOC52_27345	COG0681	Belongs to the peptidase S26 family
BOC52_27350	COG0571	ribonuclease III activity
BOC52_27355	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BOC52_27375	COG1472	Belongs to the glycosyl hydrolase 3 family
BOC52_27380	COG2204	response regulator
BOC52_27400	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BOC52_27420	COG1956	GAF domain-containing protein
BOC52_27425	COG0583	DNA-binding transcription factor activity
BOC52_27435	COG2153	protein acetylation
BOC52_27450	COG1999	signal sequence binding
BOC52_27465	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
BOC52_27470	COG1132	(ABC) transporter
BOC52_27490	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOC52_27495	COG0683	leucine binding
BOC52_27500	COG3511	phospholipase C
BOC52_27525	COG0596	Alpha beta hydrolase
BOC52_27535	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BOC52_27550	COG3394	polysaccharide catabolic process
BOC52_27565	COG4215	(ABC) transporter
BOC52_27570	COG4160	amino acid transport
BOC52_27595	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BOC52_27635	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOC52_27645	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BOC52_27675	COG1959	2 iron, 2 sulfur cluster binding
BOC52_27690	COG2151	metal-sulfur cluster biosynthetic enzyme
BOC52_27695	COG0822	iron-sulfur transferase activity
BOC52_27700	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BOC52_27710	COG0396	ATPase activity
BOC52_27715	COG0719	Fe-S assembly protein
BOC52_27735	COG0840	transmembrane signaling receptor activity
BOC52_27740	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BOC52_27745	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BOC52_27810	COG2151	metal-sulfur cluster biosynthetic enzyme
BOC52_27830	COG0415	Belongs to the DNA photolyase family
BOC52_27835	COG0529	Catalyzes the synthesis of activated sulfate
BOC52_27880	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BOC52_27895	COG0402	S-adenosylhomocysteine deaminase activity
BOC52_27930	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BOC52_27935	COG0174	glutamine synthetase
BOC52_27960	COG2801	Transposase and inactivated derivatives
BOC52_27985	COG0583	DNA-binding transcription factor activity
BOC52_27990	COG1960	acyl-CoA dehydrogenase activity
BOC52_28005	COG0477	Major facilitator Superfamily
BOC52_28015	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BOC52_28015	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BOC52_28020	COG1643	Atp-dependent helicase
BOC52_28045	COG1058	Belongs to the CinA family
BOC52_28045	COG1546	Belongs to the CinA family
BOC52_28065	COG3852	Histidine kinase
BOC52_28080	COG2197	response regulator
BOC52_28085	COG4585	Histidine kinase
BOC52_28090	COG2181	nitrate reductase activity
BOC52_28095	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
BOC52_28100	COG1140	nitrate reductase beta subunit
BOC52_28105	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
BOC52_28110	COG2223	nitrite transmembrane transporter activity
BOC52_28130	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BOC52_28135	COG0339	signal peptide processing
BOC52_28150	COG4566	intracellular signal transduction
BOC52_28165	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BOC52_28170	COG0508	dehydrogenase complex catalyzes the overall conversion of
BOC52_28175	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BOC52_28205	COG1414	Transcriptional regulator
BOC52_28230	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BOC52_28235	COG1959	2 iron, 2 sulfur cluster binding
BOC52_28240	COG1104	cysteine desulfurase activity
BOC52_28245	COG0822	iron-sulfur transferase activity
BOC52_28255	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BOC52_28270	COG2975	iron-sulfur cluster assembly
BOC52_28295	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BOC52_28300	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BOC52_28305	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BOC52_28325	COG1136	(ABC) transporter
BOC52_28330	COG0084	hydrolase, TatD family'
BOC52_28335	COG0658	competence protein
BOC52_28335	COG2333	competence protein COMEC
BOC52_28340	COG2267	carboxylic ester hydrolase activity
BOC52_28355	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BOC52_28365	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BOC52_28375	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BOC52_28385	COG2833	Protein of unknown function (DUF455)
BOC52_28395	COG0596	Alpha beta hydrolase
BOC52_28405	COG0613	PHP domain protein
BOC52_28410	COG0009	L-threonylcarbamoyladenylate synthase
BOC52_28415	COG1994	Peptidase M50
BOC52_28420	COG0180	Tryptophanyl-tRNA synthetase
BOC52_28430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BOC52_28435	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BOC52_28440	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BOC52_28450	COG2850	peptidyl-arginine hydroxylation
BOC52_28505	COG1045	serine acetyltransferase
BOC52_28515	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BOC52_28525	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BOC52_28550	COG0037	tRNA processing
BOC52_28560	COG0527	aspartate kinase activity
BOC52_28615	COG2895	sulfate adenylyltransferase (ATP) activity
BOC52_28615	COG0529	Catalyzes the synthesis of activated sulfate
BOC52_28665	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BOC52_28670	COG3958	Transketolase
BOC52_28685	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BOC52_28705	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BOC52_28725	COG0024	Methionine aminopeptidase
BOC52_28745	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BOC52_28760	COG0243	molybdopterin cofactor binding
BOC52_28785	COG4166	transmembrane transport
BOC52_28790	COG4174	ABC transporter (Permease)
BOC52_28795	COG4239	(ABC) transporter, permease
BOC52_28800	COG4172	Belongs to the ABC transporter superfamily
BOC52_28805	COG0791	NLP P60 protein
BOC52_28810	COG1752	Esterase of the alpha-beta hydrolase superfamily
BOC52_28875	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BOC52_28885	COG0583	DNA-binding transcription factor activity
BOC52_28895	COG2224	Isocitrate lyase
BOC52_28900	COG0513	Belongs to the DEAD box helicase family
BOC52_28910	COG1214	PFAM Peptidase M22, glycoprotease
BOC52_28920	COG1573	uracil-dna glycosylase
BOC52_28935	COG0351	phosphomethylpyrimidine kinase
BOC52_28940	COG0477	Major facilitator Superfamily
BOC52_28960	COG0488	(ABC) transporter
BOC52_28965	COG0386	Belongs to the glutathione peroxidase family
BOC52_28980	COG2890	protein-(glutamine-N5) methyltransferase activity
BOC52_28990	COG1393	Belongs to the ArsC family
BOC52_29035	COG0242	peptide deformylase activity
BOC52_29040	COG1187	pseudouridine synthase activity
BOC52_29050	COG0024	Methionine aminopeptidase
BOC52_29075	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BOC52_29090	COG0750	zinc metalloprotease
BOC52_29120	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BOC52_29130	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BOC52_29180	COG0330	HflC and HflK could
BOC52_29190	COG2867	negative regulation of translational initiation
BOC52_29200	COG0697	spore germination
BOC52_29275	COG2814	Major facilitator Superfamily
BOC52_29310	COG0590	tRNA wobble adenosine to inosine editing
BOC52_29315	COG1619	proteins homologs of microcin C7 resistance protein MccF
BOC52_29325	COG1953	Uracil, thiamine, allantoin
BOC52_29340	COG3195	allantoin biosynthetic process
BOC52_29340	COG3648	Uricase
BOC52_29345	COG4266	Belongs to the allantoicase family
BOC52_29360	COG2351	hydroxyisourate hydrolase activity
BOC52_29375	COG0583	DNA-binding transcription factor activity
BOC52_29385	COG3360	Dodecin
BOC52_29465	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BOC52_29480	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOC52_29490	COG2205	protein histidine kinase activity
BOC52_29495	COG0745	RESPONSE REGULATOR receiver
BOC52_29635	COG1846	Transcriptional regulator
BOC52_29640	COG1929	Belongs to the glycerate kinase type-1 family
BOC52_29660	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BOC52_29735	COG4181	ATPase activity
BOC52_29750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BOC52_29760	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BOC52_29760	COG0047	phosphoribosylformylglycinamidine synthase activity
BOC52_29770	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BOC52_29795	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_29800	COG1024	Enoyl-CoA hydratase
BOC52_29800	COG1250	3-hydroxyacyl-CoA dehydrogenase
BOC52_29805	COG1335	isochorismatase
BOC52_29810	COG0183	Belongs to the thiolase family
BOC52_29840	COG2130	NADP-dependent
BOC52_29860	COG0354	folic acid binding
BOC52_29865	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BOC52_29880	COG1247	-acetyltransferase
BOC52_29885	COG0084	hydrolase, TatD family'
BOC52_29915	COG0438	transferase activity, transferring glycosyl groups
BOC52_29945	COG0252	asparaginase activity
BOC52_29955	COG1652	LysM domain
BOC52_29965	COG2084	Dehydrogenase
BOC52_29970	COG3622	Belongs to the hyi family
BOC52_29975	COG3960	tartronate-semialdehyde synthase activity
BOC52_29980	COG0583	DNA-binding transcription factor activity
BOC52_29995	COG1595	DNA-templated transcription, initiation
BOC52_30030	COG0305	Participates in initiation and elongation during chromosome replication
BOC52_30040	COG0306	phosphate transporter
BOC52_30050	COG0791	NLP P60 protein
BOC52_30055	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BOC52_30065	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BOC52_30070	COG0726	polysaccharide deacetylase
BOC52_30075	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BOC52_30075	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BOC52_30085	COG0463	Glycosyl transferase, family 2
BOC52_30090	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BOC52_30095	COG2076	Multidrug Resistance protein
BOC52_30100	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BOC52_30110	COG0436	Aminotransferase
BOC52_30140	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BOC52_30145	COG0314	molybdopterin synthase activity
BOC52_30150	COG2346	COG2346, Truncated hemoglobins
BOC52_30155	COG1959	2 iron, 2 sulfur cluster binding
BOC52_30160	COG0542	response to heat
BOC52_30185	COG0534	Mate efflux family protein
BOC52_30205	COG3228	Belongs to the MtfA family
BOC52_30210	COG0477	Major facilitator Superfamily
BOC52_30215	COG0789	Transcriptional regulator
BOC52_30220	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BOC52_30240	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BOC52_30245	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BOC52_30255	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BOC52_30295	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOC52_30300	COG0670	Belongs to the BI1 family
BOC52_30320	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BOC52_30335	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BOC52_30350	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BOC52_30355	COG0330	HflC and HflK could
BOC52_30360	COG0330	HflC and HflK could
BOC52_30380	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
BOC52_30405	COG2183	response to ionizing radiation
BOC52_30420	COG1199	ATP-dependent helicase activity
BOC52_30430	COG0564	pseudouridine synthase activity
BOC52_30440	COG3243	poly(R)-hydroxyalkanoic acid synthase
BOC52_30445	COG0183	Belongs to the thiolase family
BOC52_30450	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_30475	COG0183	Belongs to the thiolase family
BOC52_30485	COG0626	cystathionine gamma-synthase activity
BOC52_30490	COG0560	Phosphoserine phosphatase
BOC52_30505	COG0390	transport system, permease component
BOC52_30510	COG1122	ATPase activity
BOC52_30515	COG2982	Protein involved in outer membrane biogenesis
BOC52_30525	COG0488	(ABC) transporter
BOC52_30545	COG2070	2-Nitropropane dioxygenase
BOC52_30550	COG3047	cAMP biosynthetic process
BOC52_30565	COG1914	H( )-stimulated, divalent metal cation uptake system
BOC52_30570	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BOC52_30575	COG3842	ATPase activity
BOC52_30580	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_30585	COG1177	transmembrane transport
BOC52_30615	COG3655	Transcriptional regulator
BOC52_30635	COG0789	Transcriptional regulator
BOC52_30645	COG1538	Outer membrane efflux protein
BOC52_30650	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_30665	COG0038	chloride channel
BOC52_30670	COG2855	membrane
BOC52_30690	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOC52_30795	COG0598	Magnesium transport protein CorA
BOC52_30825	COG3264	Mechanosensitive ion channel
BOC52_30825	COG1196	nuclear chromosome segregation
BOC52_30860	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BOC52_30875	COG4263	nitrous-oxide reductase activity
BOC52_30910	COG2376	Dihydroxyacetone kinase
BOC52_30930	COG0475	glutathione-regulated potassium exporter activity
BOC52_31010	COG3121	Chaperone
BOC52_31015	COG3188	usher protein
BOC52_31070	COG2197	response regulator
BOC52_31075	COG0784	Response regulator, receiver
BOC52_31075	COG2205	protein histidine kinase activity
BOC52_31130	COG2916	Histone family protein nucleoid-structuring protein H-NS
BOC52_31165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BOC52_31175	COG0457	Tetratricopeptide repeat
BOC52_31175	COG0859	PFAM glycosyl transferase family 9
BOC52_31180	COG0529	Catalyzes the synthesis of activated sulfate
BOC52_31185	COG0745	RESPONSE REGULATOR receiver
BOC52_31220	COG1595	DNA-templated transcription, initiation
BOC52_31225	COG4944	Protein of unknown function (DUF1109)
BOC52_31245	COG3220	belongs to the UPF0276 family
BOC52_31265	COG2192	nodulation
BOC52_31290	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BOC52_31310	COG0165	Argininosuccinate lyase
BOC52_31315	COG0137	argininosuccinate synthase activity
BOC52_31330	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BOC52_31355	COG3251	PFAM MbtH domain protein
BOC52_31375	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BOC52_31385	COG2207	Transcriptional regulator
BOC52_31390	COG0697	spore germination
BOC52_31395	COG0835	chemotaxis
BOC52_31415	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_31420	COG0477	Major facilitator Superfamily
BOC52_31430	COG1732	Glycine betaine
BOC52_31435	COG1174	glycine betaine transport
BOC52_31440	COG1125	glycine betaine transport
BOC52_31445	COG1174	glycine betaine transport
BOC52_31465	COG2235	arginine
BOC52_31470	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BOC52_31495	COG0583	DNA-binding transcription factor activity
BOC52_31500	COG0625	glutathione transferase activity
BOC52_31520	COG1846	Transcriptional regulator
BOC52_31525	COG2807	transmembrane transport
BOC52_31530	COG1649	PFAM Uncharacterised BCR, COG1649
BOC52_31550	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
BOC52_31560	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BOC52_31580	COG3979	chitinase
BOC52_31600	COG0400	carboxylic ester hydrolase activity
BOC52_31635	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
BOC52_31660	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BOC52_31665	COG4774	siderophore transport
BOC52_31670	COG3486	L-lysine 6-monooxygenase (NADPH) activity
BOC52_31720	COG1120	ATPase activity
BOC52_31750	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_31755	COG1070	Carbohydrate kinase
BOC52_31770	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_31780	COG1879	ABC-type sugar transport system periplasmic component
BOC52_31805	COG1132	(ABC) transporter
BOC52_31815	COG3121	Chaperone
BOC52_31825	COG3539	Fimbrial protein
BOC52_31855	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_31865	COG1309	transcriptional regulator
BOC52_31870	COG0739	heme binding
BOC52_31880	COG4597	amino acid ABC transporter
BOC52_31940	COG4964	Belongs to the GSP D family
BOC52_31960	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BOC52_31965	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BOC52_31980	COG0477	Major facilitator Superfamily
BOC52_31990	COG2719	SpoVR family
BOC52_32000	COG2766	serine protein kinase
BOC52_32015	COG0840	transmembrane signaling receptor activity
BOC52_32020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOC52_32025	COG1609	Transcriptional regulator
BOC52_32030	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_32035	COG1129	ABC transporter
BOC52_32040	COG1879	ABC-type sugar transport system periplasmic component
BOC52_32045	COG0583	DNA-binding transcription factor activity
BOC52_32050	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BOC52_32055	COG4208	sulfate ABC transporter
BOC52_32060	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BOC52_32065	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BOC52_32100	COG1131	(ABC) transporter
BOC52_32120	COG0701	Predicted permease
BOC52_32125	COG0667	Aldo Keto reductase
BOC52_32135	COG1733	regulation of RNA biosynthetic process
BOC52_32155	COG1301	dicarboxylic acid transport
BOC52_32195	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BOC52_32220	COG4702	Belongs to the UPF0303 family
BOC52_32265	COG0673	inositol 2-dehydrogenase activity
BOC52_32270	COG1802	Transcriptional regulator
BOC52_32280	COG3023	N-Acetylmuramoyl-L-alanine amidase
BOC52_32290	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BOC52_32295	COG0557	exoribonuclease II activity
BOC52_32310	COG0840	transmembrane signaling receptor activity
BOC52_32340	COG0519	Catalyzes the synthesis of GMP from XMP
BOC52_32345	COG2814	Major facilitator Superfamily
BOC52_32355	COG0318	PFAM AMP-dependent synthetase and ligase
BOC52_32420	COG4964	Belongs to the GSP D family
BOC52_32485	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BOC52_32490	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BOC52_32495	COG0508	dehydrogenase complex catalyzes the overall conversion of
BOC52_32500	COG0567	Dehydrogenase, E1 component
BOC52_32515	COG1846	Transcriptional regulator
BOC52_32525	COG1566	PFAM secretion protein HlyD family protein
BOC52_32530	COG2814	Major facilitator Superfamily
BOC52_32540	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BOC52_32555	COG2251	uridine kinase activity
BOC52_32555	COG0195	Participates in both transcription termination and antitermination
BOC52_32565	COG1187	pseudouridine synthase activity
BOC52_32575	COG0583	DNA-binding transcription factor activity
BOC52_32620	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BOC52_32650	COG2801	Transposase and inactivated derivatives
BOC52_32665	COG0776	regulation of translation
BOC52_32690	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BOC52_32705	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BOC52_32710	COG0251	oxidation-reduction process
BOC52_32715	COG2267	carboxylic ester hydrolase activity
BOC52_32725	COG0583	DNA-binding transcription factor activity
BOC52_32740	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_32795	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_32820	COG0477	Major facilitator Superfamily
BOC52_32845	COG1295	ribonuclease BN
BOC52_32860	COG0277	FAD linked oxidase domain protein
BOC52_32875	COG0583	DNA-binding transcription factor activity
BOC52_32910	COG0840	transmembrane signaling receptor activity
BOC52_32915	COG2223	nitrite transmembrane transporter activity
BOC52_32920	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BOC52_32925	COG0210	DNA helicase
BOC52_32930	COG0525	valine-tRNA ligase activity
BOC52_32935	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BOC52_32945	COG5002	protein histidine kinase activity
BOC52_32955	COG0745	RESPONSE REGULATOR receiver
BOC52_32965	COG0425	Belongs to the sulfur carrier protein TusA family
BOC52_32975	COG0673	inositol 2-dehydrogenase activity
BOC52_32980	COG0673	inositol 2-dehydrogenase activity
BOC52_32995	COG1172	Belongs to the binding-protein-dependent transport system permease family
BOC52_33010	COG3962	Belongs to the TPP enzyme family
BOC52_33020	COG3718	enzyme involved in inositol metabolism
BOC52_33030	COG0411	ABC transporter
BOC52_33035	COG0559	Belongs to the binding-protein-dependent transport system permease family
BOC52_33040	COG0824	Thioesterase
BOC52_33075	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BOC52_33085	COG0477	Major facilitator Superfamily
BOC52_33100	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BOC52_33110	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BOC52_33120	COG1051	belongs to the nudix hydrolase family
BOC52_33150	COG1858	cytochrome C peroxidase
BOC52_33155	COG3511	phospholipase C
BOC52_33170	COG1566	PFAM secretion protein HlyD family protein
BOC52_33180	COG2814	Major facilitator Superfamily
BOC52_33185	COG1538	Outer membrane efflux protein
BOC52_33195	COG2197	response regulator
BOC52_33250	COG0583	DNA-binding transcription factor activity
BOC52_33290	COG1914	H( )-stimulated, divalent metal cation uptake system
BOC52_33320	COG2801	Transposase and inactivated derivatives
BOC52_33395	COG3501	Rhs element vgr protein
BOC52_33455	COG3501	Rhs element vgr protein
BOC52_33525	COG0457	Tetratricopeptide repeat
BOC52_33525	COG0859	PFAM glycosyl transferase family 9
BOC52_33570	COG0745	RESPONSE REGULATOR receiver
BOC52_33575	COG0583	DNA-binding transcription factor activity
BOC52_33625	COG0366	Alpha amylase catalytic
BOC52_33630	COG0366	Alpha amylase catalytic
BOC52_33680	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BOC52_33720	COG0582	viral genome integration into host DNA
BOC52_33770	COG4942	peptidase
BOC52_33780	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BOC52_33795	COG0534	Mate efflux family protein
BOC52_33875	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BOC52_33890	COG0745	RESPONSE REGULATOR receiver
BOC52_33905	COG0581	inorganic phosphate transmembrane transporter activity
BOC52_33910	COG0573	inorganic phosphate transmembrane transporter activity
BOC52_33915	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BOC52_33930	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BOC52_33935	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BOC52_33945	COG1534	Rna-binding protein
BOC52_33955	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BOC52_33960	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BOC52_33970	COG0505	Belongs to the CarA family
BOC52_34000	COG1388	LysM domain
BOC52_34000	COG0741	lytic transglycosylase activity
BOC52_34005	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BOC52_34010	COG2226	methyltransferase
BOC52_34015	COG0328	RNA-DNA hybrid ribonuclease activity
BOC52_34020	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BOC52_34030	COG1742	UPF0060 membrane protein
BOC52_34040	COG0477	Major facilitator Superfamily
BOC52_34075	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOC52_34085	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BOC52_34105	COG3052	prosthetic group binding
BOC52_34130	COG0583	DNA-binding transcription factor activity
BOC52_34145	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
BOC52_34185	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_34220	COG0583	DNA-binding transcription factor activity
BOC52_34240	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BOC52_34250	COG1522	sequence-specific DNA binding
BOC52_34280	COG0745	RESPONSE REGULATOR receiver
BOC52_34280	COG3706	GGDEF domain
BOC52_34320	COG1609	Transcriptional regulator
BOC52_34325	COG1840	ABC-type Fe3 transport system, periplasmic component
BOC52_34330	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BOC52_34345	COG1177	transmembrane transport
BOC52_34365	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BOC52_34385	COG2814	Major facilitator Superfamily
BOC52_34395	COG0697	spore germination
BOC52_34410	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BOC52_34415	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
BOC52_34435	COG2801	Transposase and inactivated derivatives
BOC52_34480	COG2200	EAL domain
BOC52_34490	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BOC52_34495	COG1074	ATP-dependent DNA helicase activity
BOC52_34500	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BOC52_34515	COG1289	transmembrane transporter activity
BOC52_34540	COG1840	ABC-type Fe3 transport system, periplasmic component
BOC52_34545	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_34550	COG3842	ATPase activity
BOC52_34555	COG1522	sequence-specific DNA binding
BOC52_34575	COG1959	2 iron, 2 sulfur cluster binding
BOC52_34610	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_34615	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BOC52_34655	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BOC52_34670	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BOC52_34670	COG2010	Cytochrome c
BOC52_34675	COG2863	cytochrome
BOC52_34705	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BOC52_34725	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BOC52_34745	COG0006	proline dipeptidase activity
BOC52_34810	COG2866	Carboxypeptidase
BOC52_34815	COG3022	response to hydroperoxide
BOC52_34825	COG0436	Aminotransferase
BOC52_34835	COG1024	Enoyl-CoA hydratase
BOC52_34850	COG1960	acyl-CoA dehydrogenase activity
BOC52_34870	COG1012	belongs to the aldehyde dehydrogenase family
BOC52_34870	COG2030	dehydratase
BOC52_34875	COG1960	acyl-CoA dehydrogenase activity
BOC52_34880	COG1960	acyl-CoA dehydrogenase activity
BOC52_34900	COG1007	ATP synthesis coupled electron transport
BOC52_34930	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BOC52_34935	COG1034	ATP synthesis coupled electron transport
BOC52_34945	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BOC52_34980	COG0149	triose-phosphate isomerase activity
BOC52_35005	COG0683	leucine binding
BOC52_35020	COG0288	reversible hydration of carbon dioxide
BOC52_35025	COG0659	secondary active sulfate transmembrane transporter activity
BOC52_35040	COG1183	phosphatidylcholine synthase activity
BOC52_35060	COG0028	Belongs to the TPP enzyme family
BOC52_35090	COG0438	transferase activity, transferring glycosyl groups
BOC52_35110	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_35120	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
BOC52_35125	COG0477	Major facilitator Superfamily
BOC52_35130	COG0154	amidase activity
BOC52_35140	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BOC52_35160	COG2076	Multidrug Resistance protein
BOC52_35170	COG0745	RESPONSE REGULATOR receiver
BOC52_35175	COG2205	protein histidine kinase activity
BOC52_35190	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BOC52_35195	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BOC52_35225	COG1028	Short-chain dehydrogenase reductase Sdr
BOC52_35240	COG0217	transcriptional regulatory protein
BOC52_35245	COG0151	Belongs to the GarS family
BOC52_35260	COG0799	negative regulation of ribosome biogenesis
BOC52_35270	COG0424	maF-like protein
BOC52_35275	COG1530	ribonuclease E activity
BOC52_35285	COG2233	PERMEase
BOC52_35340	COG1595	DNA-templated transcription, initiation
BOC52_35350	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BOC52_35395	COG0859	PFAM glycosyl transferase family 9
BOC52_35400	COG0438	transferase activity, transferring glycosyl groups
BOC52_35420	COG1132	(ABC) transporter
BOC52_35440	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BOC52_35445	COG0513	Belongs to the DEAD box helicase family
BOC52_35480	COG1674	ftsk spoiiie
BOC52_35495	COG3387	PFAM Glycoside hydrolase 15-related
BOC52_35505	COG1309	transcriptional regulator
BOC52_35515	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BOC52_35550	COG3135	benzoate transporter
BOC52_35565	COG2764	glyoxalase bleomycin resistance protein dioxygenase
BOC52_35580	COG4106	trans-aconitate 2-methyltransferase activity
BOC52_35600	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_35610	COG0697	spore germination
BOC52_35615	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BOC52_35660	COG0477	Major facilitator Superfamily
BOC52_35670	COG0583	DNA-binding transcription factor activity
BOC52_35680	COG0583	DNA-binding transcription factor activity
BOC52_35710	COG0187	DNA topoisomerase II activity
BOC52_35725	COG1773	rubredoxin
BOC52_35745	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BOC52_35825	COG3547	Transposase (IS116 IS110 IS902 family)
BOC52_35830	COG3012	SEC-C Motif Domain Protein
BOC52_35835	COG4372	Transposase
BOC52_35840	COG3436	PFAM IS66 Orf2 family protein
BOC52_35850	COG2963	transposase activity
BOC52_35950	COG1881	PFAM PEBP family protein
BOC52_35955	COG2814	Major facilitator Superfamily
BOC52_35975	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
BOC52_36025	COG2801	Transposase and inactivated derivatives
BOC52_36035	COG0443	Heat shock 70 kDa protein
BOC52_36100	COG1116	anion transmembrane transporter activity
BOC52_36105	COG1176	ABC-type spermidine putrescine transport system, permease component I
BOC52_36135	COG1741	Belongs to the pirin family
BOC52_36145	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BOC52_36150	COG4215	(ABC) transporter
BOC52_36155	COG4160	amino acid transport
BOC52_36170	COG0347	Belongs to the P(II) protein family
BOC52_36190	COG1472	Belongs to the glycosyl hydrolase 3 family
BOC52_36205	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BOC52_36220	COG2271	Major facilitator Superfamily
BOC52_36260	COG2226	methyltransferase
BOC52_36300	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BOC52_36310	COG1982	Orn Lys Arg decarboxylase major
BOC52_36325	COG0489	protein tyrosine kinase activity
BOC52_36330	COG2885	chlorophyll binding
BOC52_36330	COG3047	cAMP biosynthetic process
BOC52_36355	COG2911	Protein conserved in bacteria
BOC52_36360	COG0729	surface antigen
BOC52_36370	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BOC52_36395	COG0489	protein tyrosine kinase activity
BOC52_36400	COG2259	Doxx family
BOC52_36405	COG1492	cobalamin metabolic process
BOC52_36415	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BOC52_36425	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BOC52_36440	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
BOC52_36445	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BOC52_36460	COG4206	TonB-dependent receptor
BOC52_36495	COG0583	DNA-binding transcription factor activity
BOC52_36510	COG4654	Cytochrome c, class I
BOC52_36530	COG0795	lipopolysaccharide-transporting ATPase activity
BOC52_36545	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BOC52_36545	COG1648	precorrin-2 dehydrogenase activity
BOC52_36550	COG2895	sulfate adenylyltransferase (ATP) activity
BOC52_36560	COG0175	sulfate reduction
BOC52_36575	COG0583	DNA-binding transcription factor activity
BOC52_36590	COG0582	viral genome integration into host DNA
BOC52_36665	COG1396	sequence-specific DNA binding
BOC52_36670	COG0235	Class ii aldolase
BOC52_36675	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BOC52_36680	COG2258	MOSC domain
BOC52_36685	COG2267	carboxylic ester hydrolase activity
BOC52_36695	COG0583	DNA-binding transcription factor activity
BOC52_36705	COG1187	pseudouridine synthase activity
BOC52_36720	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BOC52_36720	COG0543	2 iron, 2 sulfur cluster binding
BOC52_36725	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BOC52_36730	COG0456	acetyltransferase
BOC52_36770	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BOC52_36775	COG1047	Peptidyl-prolyl cis-trans
BOC52_36790	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BOC52_36795	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BOC52_36820	COG1511	domain protein
BOC52_36820	COG3264	Mechanosensitive ion channel
BOC52_36825	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BOC52_36825	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BOC52_36830	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BOC52_36835	COG0196	riboflavin kinase activity
BOC52_36840	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BOC52_36870	COG1113	amino acid transport
BOC52_36875	COG0542	response to heat
BOC52_36885	COG1278	Cold shock
BOC52_36920	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BOC52_36955	COG0656	L-ascorbic acid biosynthetic process
BOC52_36960	COG2188	Transcriptional regulator
BOC52_36980	COG2814	Major facilitator Superfamily
BOC52_37040	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BOC52_37055	COG1663	tetraacyldisaccharide 4'-kinase activity
BOC52_37095	COG0728	peptidoglycan biosynthetic process