LOCUS JN420372 4395 bp DNA linear VRL 16-SEP-2011 DEFINITION California sea lion adeno-associated virus 1 isolate 1187 Rep78 and VP1 genes, complete cds. ACCESSION JN420372 VERSION JN420372.1 KEYWORDS . SOURCE California sea lion adeno-associated virus 1 ORGANISM California sea lion adeno-associated virus 1 Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Dependoparvovirus. REFERENCE 1 (bases 1 to 4395) AUTHORS Li,L., Shan,T., Wang,C., Cote,C., Kolman,J., Onions,D., Gulland,F.M. and Delwart,E. TITLE The fecal viral flora of california sea lions JOURNAL J. Virol. 85 (19), 9909-9917 (2011) PUBMED 21795334 REFERENCE 2 (bases 1 to 4395) AUTHORS Li,L., Wang,C. and Delwart,E. TITLE Direct Submission JOURNAL Submitted (01-AUG-2011) Department of Laboratory Medicine, University of California, San Francisco, Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118, USA FEATURES Location/Qualifiers source 1..4395 /organism="California sea lion adeno-associated virus 1" /mol_type="genomic DNA" /isolate="1187" /isolation_source="sea lion feces" /host="Zalophus californianus (California sea lion)" /db_xref="taxon:1073950" /country="USA: California" /collection_date="2010" CDS 291..2093 /note="nonstructural protein" /codon_start=1 /product="Rep78" /protein_id="AEM37643.1" /translation="MASFYEVVAKIPSDLEEHLPGICDDFVSVIMSKEWRLPESSDLV LDQIDQPKLTIADAVRKVFYFEWLKYCRDVEEPLFFFQFEKGKENFHVHMVIETSNVS SMVLGRYIGTIKKKLVRKVFREVEPQMPDWLAVTKTKQSGGVNKTYDKGYIPAYLLPK TQPELQWAWTNIEEYKSASLNLAERKRLVDEFLASLRRDGPSQSEPDDQQPHGPVIRN RTSQKYMALVSWLVENGITSEKQWIQEDQESYLSFNAAGSSRSQIKSALDNASRIMSL TKKASDYLVGQSVPEDITENKIYQLFKMNGYDPAYLGSILLGWCQGRFGKRNTVWLYG PATTGKTNLAEAIAHSVPFYGCVNWTNENFPFNDCVDKMLIWWEEGKMTSKVVESAKA ILGGSKVRVDQKCKSSVQIDSTPVIITSNTDMCCVIDGNSTTFEHRQPLEDRMFRINL EQRLSHDFGKITKREVREFLAWAQEYEVDVEHTFEVTKLAKPKVTKRSAPLSDDYKSP AKRARLIPDLVAEEATSSALAEAEEWDLNWDRRYDCRCEAHSMSVRVEGLCRDCEYLN RGKNMCLVHGDTGCHVCHAVPPWVSDPDDCTDEQ" CDS 2124..4280 /note="structural protein" /codon_start=1 /product="VP1" /protein_id="AEM37644.1" /translation="MSSLFKEYLQSTGLVGIQSGAPKPKAGQQKQDTGSFEWKKKEDT ARGLVLPGYKYLGPFNGLERGEPVNAADAAAQRHDRQYDRILQQGGNPYLTYNHADRE FQEELQSDESFGGNLGKAVFQAKKRILEPLGLVEEDPSQPDSSSDNTAPPVKKSRLEE AQPIQSPDVSSSTGGGIADVMSGDAEMAAVGGGAPGVDGQGAEGVGTSSGNWHCDSQW SEGHVRTTSTRTWVLPSYNNHLYKRLGSSAQSNTYNGFSTPWGYLDFNRWHCHFSPRN WQRLINNNWGIRPKRLNVKLFNIQVKEVTTEGGTTTVANNLTSTIQVFADNAYELPYV VDAGHEGALPPFPNDVFMIPQYGYCGLVSGQSQNQSDLCSFYCLEYFPSQMLRTGNNF EMNFRFEDVPFHSMYAHSQSLDRLMNPLIDQYLWSLKQTGNPTGSTTRDLKFIKNKVP NFAHYGKNWLPGPFIRQQGWTTQNINNSVVNFNDMLGKNSTFTLDTRWSSLAPGPCMG DDGRTPSTTKFSNAQLMFGSGTQPTEGGEDAVHITSESEVKATNPTAIDEYGRVADNT QNATTAPTTVGNAAMGAMPGMVWQDRDIYLQGPIWGKIPHTDGHFHPSPLMGGFGYRK PPPQIFIKNTPVPGNPATTFSPNRINNFITQYSTGQVTVTIDWELQKENSKRWNPEVQ FTSNFGTVDSLNWAPDNAGNYKEPRVVGSRFLTHIL" ORIGIN 1 tatatagcat gactcacatg ttacgttgct gttatgtgtc gagcgagcga gcgagcccag 61 gaggcaggag ggggattgcc cactctctca aaagggactg accattcctg actcatgcct 121 gacctttgtt cttctagtct gttcttttgc tgacacattt cttatatgtt acatattaac 181 tatggggtga ctgcttttat ccaatgagac acagggcgtt gccctgcaca tgggtatatc 241 tgtccgaatg agcgagcgct cagtacagag cgtctctgct tgttaacaag atggcttcct 301 tctacgaggt ggtggccaag atccccagcg acctggagga gcaccttccc ggcatctgcg 361 atgactttgt ctctgtgatt atgagcaagg agtggcgttt gcccgagagc tccgaccttg 421 tcctggacca gattgaccag ccgaagctga ctatcgcgga cgccgtccgc aaggtctttt 481 actttgagtg gctcaagtac tgccgcgacg tggaagagcc cttgttcttt ttccaatttg 541 agaagggcaa ggagaacttt cacgtccaca tggtcatcga gacctccaac gtgagttcca 601 tggtcctggg ccggtacatt ggtactatta aaaagaagct ggtccgcaag gtgtttcggg 661 aggtcgagcc ccagatgccc gactggctag ccgtgaccaa gactaagcaa tccgggggcg 721 ttaacaagac ctacgacaag ggctacattc ccgcctacct gctacccaag acccaaccgg 781 agcttcagtg ggcgtggaca aacatcgaag agtataagag cgccagcctg aacctggccg 841 agcgcaaacg gctggtggat gagttcctgg cttcgcttcg ccgcgacggc ccgtctcaga 901 gcgagcctga cgaccagcag ccccacggac cggtcatcag aaaccggacc agtcaaaagt 961 acatggctct cgtgtcctgg ctcgtggaga atggaatcac cagcgaaaag cagtggatcc 1021 aggaagacca ggaaagctac ctttcattta atgctgcagg cagctctagg agccagatca 1081 aatcggccct ggacaacgcc agtcgaatca tgtctctcac aaagaaagcc tctgactatc 1141 tcgttggaca gtccgtcccc gaagatatca cagaaaataa aatctaccag ctgtttaaaa 1201 tgaacggata tgaccctgct tacctgggct ccattttgct gggatggtgc cagggcaggt 1261 ttggcaaaag aaacaccgtc tggctgtatg gacccgcgac gacgggcaag acgaacctgg 1321 cggaggcgat tgcgcactct gtgccatttt atggttgtgt caattggacc aacgagaact 1381 ttcccttcaa cgactgcgtg gacaaaatgc tcatctggtg ggaagaagga aagatgacgt 1441 ccaaggtggt ggaatcggcc aaggcgatct tgggcggatc caaggtccgc gtggaccaaa 1501 agtgcaagag ctccgtgcag attgactcga ccccggtgat catcacttcc aataccgaca 1561 tgtgctgcgt gattgacggc aattcaacca cgttcgagca ccggcagccc ctcgaggacc 1621 gcatgttccg catcaacctc gaacagagac tctcccatga ctttgggaaa attaccaaga 1681 gggaggtgcg ggaattccta gcctgggcgc aggaatatga agtagacgta gagcatacct 1741 tcgaggtgac taagctggcg aagccaaagg tcactaaaag gtccgcccct ctgtctgatg 1801 actataaaag cccggcaaag agagcgcgcc tcattcccga tcttgtcgcg gaggaggcaa 1861 cgtcgagcgc tctagccgag gccgaggagt gggacctaaa ctgggaccga aggtacgact 1921 gccgctgtga ggcacactct atgtctgtgc gggtagaggg gctgtgtcgg gactgtgaat 1981 atctgaaccg gggaaaaaat atgtgtcttg ttcacgggga caccgggtgt catgtctgtc 2041 atgccgtccc cccttgggtg tctgatcctg atgattgtac tgatgagcaa taaaagttca 2101 aaattctaaa ctgaaatgta gccatgtctt ctttgtttaa agagtacctg cagagtaccg 2161 gactggtggg tatccagtcg ggagcgccga agccaaaggc cggccagcag aagcaggata 2221 cagggtcctt tgagtggaaa aagaaggagg acacagccag agggctggtc cttcccggtt 2281 acaagtacct cgggcccttc aacggtctag agcggggcga gcctgtgaat gccgcggacg 2341 ccgcggccca gcgacacgac cgacagtacg atcgtattct acaacaaggg ggtaatccat 2401 acctcacgta caaccacgcc gaccgagagt tccaggagga gctccagtct gacgagtctt 2461 ttgggggaaa tcttggcaag gctgtgtttc aggccaagaa gcgaatccta gagcccctcg 2521 gtctggttga agaggatccc tctcagccag attcgtcctc ggacaacacg gcgccacccg 2581 tgaaaaagtc ccgtctcgaa gaagcccagc ccattcaaag tccagacgtt tccagcagca 2641 ctggcggagg aattgccgac gtcatgtctg gagatgctga aatggctgca gtgggcgggg 2701 gagcaccggg cgtcgacggc cagggtgccg agggagtggg tacttcctcg ggtaattggc 2761 attgcgattc ccagtggtca gaaggacacg tcagaaccac cagcaccaga acctgggtgt 2821 tgcccagcta caacaaccac ctgtataaac ggcttggaag tagcgcacaa tccaatacct 2881 acaacggatt ctccaccccc tggggatacc tcgacttcaa tagatggcac tgtcacttca 2941 gtcctcggaa ctggcaacgt ctcatcaaca acaactgggg catcagacca aaaagactta 3001 atgttaaatt gttcaacata caagtcaaag aggtcacgac ggaagggggg acgacgaccg 3061 tcgccaataa ccttaccagc acgattcagg tgtttgcgga caacgcgtac gaactcccgt 3121 atgttgtcga cgcgggtcac gagggggcat tgccgccgtt cccaaacgac gtgtttatga 3181 ttccccaata cggatactgc gggctggtgt ctggtcaaag tcagaatcag tcggacttgt 3241 gttcgtttta ttgcctggag tattttccat cccagatgct gagaacagga aacaattttg 3301 aaatgaattt caggtttgaa gacgttccat ttcactccat gtacgcccac agccagtctc 3361 tagacaggct catgaatcct ttaattgatc agtatctgtg gagtctaaaa caaacaggaa 3421 acccgactgg atcaacaacg agagacttaa aatttatcaa gaacaaagtt cccaattttg 3481 cacattatgg aaaaaattgg cttcctggac cttttattag acaacagggg tggacaacac 3541 aaaatattaa taatagtgtt gttaatttta atgacatgct gggaaaaaat tcgacattta 3601 ctttggacac tagatggagt tcattagcgc ctggtccgtg tatgggggat gacggacgaa 3661 ctccatccac caccaagttc tcaaatgctc agctcatgtt tggatctgga acacaaccca 3721 ccgaaggcgg tgaagatgct gtacatatta catccgagtc ggaggtcaag gcaaccaacc 3781 caactgcaat cgatgaatac ggacgagtgg ccgataatac gcaaaatgca acaaccgccc 3841 caaccacagt gggaaatgct gcaatggggg ccatgcctgg gatggtgtgg caagataggg 3901 atatctatct tcaaggaccc atctggggaa aaatacccca tacagacgga cattttcatc 3961 cgtctcctct catggggggg tttggataca gaaaaccccc tccgcaaatt tttattaaaa 4021 acacccccgt tcctggaaat ccggcaacta cattttctcc aaatagaata aacaatttca 4081 ttactcaata ctcaacggga caagtgaccg ttactattga ctgggagctg caaaaggaaa 4141 actcaaagag atggaaccca gaagtacaat ttacatcaaa ttttggcacg gtcgattcac 4201 taaactgggc accggacaac gcgggaaact acaaagaacc aagggtggtg gggtctcgat 4261 tccttacgca tatactataa tcatacccaa gtatgttgca tatcctcaat aaaccgtgta 4321 ttcgtatcag ttataactac gtgtctgtct ttcatgagtc atcaatcaga cgtccctttg 4381 agagagtggg caatc //