locus-tag class description IM40_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain IM40_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain IM40_00010 PF02767 DNA polymerase III beta subunit, central domain IM40_00015 PF02463 RecF/RecN/SMC N terminal domain IM40_00020 PF01751 Toprim domain IM40_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_00020 PF00986 DNA gyrase B subunit, carboxyl terminus IM40_00020 PF00204 DNA gyrase B IM40_00040 PF02666 Phosphatidylserine decarboxylase IM40_00045 PF01066 CDP-alcohol phosphatidyltransferase IM40_00050 PF00561 alpha/beta hydrolase fold IM40_00050 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IM40_00060 PF00271 Helicase conserved C-terminal domain IM40_00060 PF00270 DEAD/DEAH box helicase IM40_00060 PF17191 RecG wedge domain IM40_00065 PF03169 OPT oligopeptide transporter protein IM40_00075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IM40_00075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IM40_00075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IM40_00080 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_00085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IM40_00090 PF00733 Asparagine synthase IM40_00090 PF13537 Glutamine amidotransferase domain IM40_00105 PF02325 YGGT family IM40_00110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IM40_00110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IM40_00140 PF00733 Asparagine synthase IM40_00140 PF13537 Glutamine amidotransferase domain IM40_00160 PF00005 ABC transporter IM40_00180 PF07690 Major Facilitator Superfamily IM40_00185 PF13533 Biotin-lipoyl like IM40_00200 PF00012 Hsp70 protein IM40_00205 PF01556 DnaJ C terminal domain IM40_00205 PF00684 DnaJ central domain IM40_00205 PF00226 DnaJ domain IM40_00230 PF01545 Cation efflux family IM40_00230 PF16916 Dimerisation domain of Zinc Transporter IM40_00240 PF00476 DNA polymerase family A IM40_00240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IM40_00240 PF01367 5'-3' exonuclease, C-terminal SAM fold IM40_00240 PF01612 3'-5' exonuclease IM40_00245 PF00468 Ribosomal protein L34 IM40_00255 PF00437 Type II/IV secretion system protein IM40_00260 PF00482 Type II secretion system (T2SS), protein F IM40_00295 PF00571 CBS domain IM40_00295 PF01380 SIS domain IM40_00320 PF06965 Na+/H+ antiporter 1 IM40_00325 PF00625 Guanylate kinase IM40_00330 PF07690 Major Facilitator Superfamily IM40_00335 PF13520 Amino acid permease IM40_00345 PF00085 Thioredoxin IM40_00355 PF03966 Trm112p-like protein IM40_00365 PF00005 ABC transporter IM40_00370 PF00293 NUDIX domain IM40_00375 PF02390 Putative methyltransferase IM40_00380 PF00348 Polyprenyl synthetase IM40_00435 PF02622 Uncharacterized ACR, COG1678 IM40_00445 PF01197 Ribosomal protein L31 IM40_00450 PF01791 DeoC/LacD family aldolase IM40_00465 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IM40_00470 PF13193 AMP-binding enzyme C-terminal domain IM40_00470 PF00501 AMP-binding enzyme IM40_00475 PF00108 Thiolase, N-terminal domain IM40_00475 PF02803 Thiolase, C-terminal domain IM40_00480 PF00378 Enoyl-CoA hydratase/isomerase IM40_00480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IM40_00480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IM40_00485 PF02770 Acyl-CoA dehydrogenase, middle domain IM40_00485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IM40_00485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IM40_00485 PF12806 Acetyl-CoA dehydrogenase C-terminal like IM40_00500 PF00144 Beta-lactamase IM40_00505 PF01751 Toprim domain IM40_00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_00505 PF00986 DNA gyrase B subunit, carboxyl terminus IM40_00505 PF00204 DNA gyrase B IM40_00515 PF01923 Cobalamin adenosyltransferase IM40_00560 PF01725 Ham1 family IM40_00565 PF06969 HemN C-terminal domain IM40_00565 PF04055 Radical SAM superfamily IM40_00570 PF04002 RadC-like JAB domain IM40_00575 PF00360 Phytochrome region IM40_00575 PF00990 Diguanylate cyclase, GGDEF domain IM40_00575 PF01590 GAF domain IM40_00575 PF00563 EAL domain IM40_00585 PF00115 Cytochrome C and Quinol oxidase polypeptide I IM40_00590 PF01040 UbiA prenyltransferase family IM40_00600 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IM40_00610 PF03030 Inorganic H+ pyrophosphatase IM40_00630 PF00011 Hsp20/alpha crystallin family IM40_00655 PF01578 Cytochrome C assembly protein IM40_00665 PF03100 CcmE IM40_00675 PF00430 ATP synthase B/B' CF(0) IM40_00680 PF00430 ATP synthase B/B' CF(0) IM40_00685 PF00137 ATP synthase subunit C IM40_00690 PF00119 ATP synthase A chain IM40_00695 PF02637 GatB domain IM40_00695 PF02934 GatB/GatE catalytic domain IM40_00700 PF01425 Amidase IM40_00705 PF02686 Glu-tRNAGln amidotransferase C subunit IM40_00710 PF01209 ubiE/COQ5 methyltransferase family IM40_00715 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IM40_00715 PF06827 Zinc finger found in FPG and IleRS IM40_00715 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IM40_00765 PF04539 Sigma-70 region 3 IM40_00765 PF04545 Sigma-70, region 4 IM40_00765 PF03979 Sigma-70 factor, region 1.1 IM40_00765 PF00140 Sigma-70 factor, region 1.2 IM40_00765 PF04542 Sigma-70 region 2 IM40_00765 PF04546 Sigma-70, non-essential region IM40_00775 PF05958 tRNA (Uracil-5-)-methyltransferase IM40_00780 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) IM40_00805 PF02321 Outer membrane efflux protein IM40_00825 PF03707 Bacterial signalling protein N terminal repeat IM40_00825 PF00990 Diguanylate cyclase, GGDEF domain IM40_00825 PF00563 EAL domain IM40_00840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IM40_00840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IM40_00855 PF01513 ATP-NAD kinase IM40_00860 PF01297 Zinc-uptake complex component A periplasmic IM40_00900 PF07690 Major Facilitator Superfamily IM40_00915 PF01728 FtsJ-like methyltransferase IM40_00920 PF01189 16S rRNA methyltransferase RsmB/F IM40_00920 PF01029 NusB family IM40_00925 PF08676 MutL C terminal dimerisation domain IM40_00925 PF01119 DNA mismatch repair protein, C-terminal domain IM40_00930 PF00342 Phosphoglucose isomerase IM40_00935 PF05193 Peptidase M16 inactive domain IM40_00955 PF08264 Anticodon-binding domain of tRNA IM40_00955 PF06827 Zinc finger found in FPG and IleRS IM40_00955 PF00133 tRNA synthetases class I (I, L, M and V) IM40_00960 PF03449 Transcription elongation factor, N-terminal IM40_00960 PF01272 Transcription elongation factor, GreA/GreB, C-term IM40_00975 PF00572 Ribosomal protein L13 IM40_00980 PF00380 Ribosomal protein S9/S16 IM40_01010 PF07687 Peptidase dimerisation domain IM40_01010 PF01546 Peptidase family M20/M25/M40 IM40_01015 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IM40_01015 PF14602 Hexapeptide repeat of succinyl-transferase IM40_01015 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_01040 PF13567 Domain of unknown function (DUF4131) IM40_01040 PF00753 Metallo-beta-lactamase superfamily IM40_01040 PF03772 Competence protein IM40_01055 PF13610 DDE domain IM40_01095 PF01218 Coproporphyrinogen III oxidase IM40_01100 PF00588 SpoU rRNA Methylase family IM40_01110 PF01773 Na+ dependent nucleoside transporter N-terminus IM40_01110 PF07662 Na+ dependent nucleoside transporter C-terminus IM40_01110 PF07670 Nucleoside recognition IM40_01120 PF00034 Cytochrome c IM40_01125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IM40_01130 PF00528 Binding-protein-dependent transport system inner membrane component IM40_01135 PF12911 N-terminal TM domain of oligopeptide transport permease C IM40_01135 PF00528 Binding-protein-dependent transport system inner membrane component IM40_01140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IM40_01140 PF00005 ABC transporter IM40_01145 PF00698 Acyl transferase domain IM40_01155 PF00550 Phosphopantetheine attachment site IM40_01160 PF02801 Beta-ketoacyl synthase, C-terminal domain IM40_01160 PF00109 Beta-ketoacyl synthase, N-terminal domain IM40_01165 PF02618 YceG-like family IM40_01205 PF04384 Iron-sulphur cluster assembly IM40_01210 PF00111 2Fe-2S iron-sulfur cluster binding domain IM40_01215 PF00875 DNA photolyase IM40_01215 PF03441 FAD binding domain of DNA photolyase IM40_01235 PF01066 CDP-alcohol phosphatidyltransferase IM40_01245 PF00334 Nucleoside diphosphate kinase IM40_01250 PF04364 DNA polymerase III chi subunit, HolC IM40_01255 PF00883 Cytosol aminopeptidase family, catalytic domain IM40_01255 PF02789 Cytosol aminopeptidase family, N-terminal domain IM40_01260 PF00471 Ribosomal protein L33 IM40_01270 PF03458 UPF0126 domain IM40_01290 PF00005 ABC transporter IM40_01290 PF00664 ABC transporter transmembrane region IM40_01305 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus IM40_01305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IM40_01310 PF00854 POT family IM40_01320 PF00005 ABC transporter IM40_01320 PF12848 ABC transporter IM40_01350 PF03099 Biotin/lipoate A/B protein ligase family IM40_01355 PF00154 recA bacterial DNA recombination protein IM40_01370 PF02272 DHHA1 domain IM40_01370 PF01411 tRNA synthetases class II (A) IM40_01370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IM40_01380 PF00484 Carbonic anhydrase IM40_01390 PF00717 Peptidase S24-like IM40_01395 PF01809 Putative membrane protein insertion efficiency factor IM40_01400 PF14849 YidC periplasmic domain IM40_01400 PF02096 60Kd inner membrane protein IM40_01405 PF01926 50S ribosome-binding GTPase IM40_01460 PF01580 FtsK/SpoIIIE family IM40_01460 PF09397 Ftsk gamma domain IM40_01460 PF17854 FtsK alpha domain IM40_01460 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IM40_01460 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IM40_01460 PF01580 FtsK/SpoIIIE family IM40_01460 PF17854 FtsK alpha domain IM40_01460 PF09397 Ftsk gamma domain IM40_01475 PF01370 NAD dependent epimerase/dehydratase family IM40_01480 PF07690 Major Facilitator Superfamily IM40_01495 PF00166 Chaperonin 10 Kd subunit IM40_01500 PF00118 TCP-1/cpn60 chaperonin family IM40_01550 PF17954 Quercetinase C-terminal cupin domain IM40_01550 PF02678 Pirin IM40_01560 PF02805 Metal binding domain of Ada IM40_01560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IM40_01560 PF12833 Helix-turn-helix domain IM40_01560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IM40_01575 PF08241 Methyltransferase domain IM40_01625 PF00692 dUTPase IM40_01675 PF01548 Transposase IM40_01675 PF02371 Transposase IS116/IS110/IS902 family IM40_01695 PF13416 Bacterial extracellular solute-binding protein IM40_01715 PF01416 tRNA pseudouridine synthase IM40_01720 PF02911 Formyl transferase, C-terminal domain IM40_01720 PF00551 Formyl transferase IM40_01725 PF01327 Polypeptide deformylase IM40_01740 PF10502 Signal peptidase, peptidase S26 IM40_01745 PF00035 Double-stranded RNA binding motif IM40_01745 PF14622 Ribonuclease-III-like IM40_01750 PF07650 KH domain IM40_01750 PF01926 50S ribosome-binding GTPase IM40_01785 PF01176 Translation initiation factor 1A / IF-1 IM40_01795 PF00575 S1 RNA binding domain IM40_01795 PF10150 Ribonuclease E/G family IM40_01800 PF03884 DNA gyrase inhibitor YacG IM40_01810 PF01343 Peptidase family S49 IM40_01815 PF18324 Hypothetical protein TT1725 IM40_01815 PF00180 Isocitrate/isopropylmalate dehydrogenase IM40_01840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IM40_01845 PF00448 SRP54-type protein, GTPase domain IM40_01855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IM40_01855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IM40_01855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IM40_01855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IM40_01880 PF00378 Enoyl-CoA hydratase/isomerase IM40_01885 PF02559 CarD-like/TRCF domain IM40_01885 PF00271 Helicase conserved C-terminal domain IM40_01885 PF03461 TRCF domain IM40_01885 PF17757 UvrB interaction domain IM40_01885 PF00270 DEAD/DEAH box helicase IM40_01895 PF00892 EamA-like transporter family IM40_01960 PF02405 Permease MlaE IM40_01965 PF00005 ABC transporter IM40_01980 PF01027 Inhibitor of apoptosis-promoting Bax1 IM40_01995 PF00164 Ribosomal protein S12/S23 IM40_02000 PF00177 Ribosomal protein S7p/S5e IM40_02005 PF00679 Elongation factor G C-terminus IM40_02005 PF14492 Elongation Factor G, domain II IM40_02005 PF03764 Elongation factor G, domain IV IM40_02005 PF00009 Elongation factor Tu GTP binding domain IM40_02005 PF03144 Elongation factor Tu domain 2 IM40_02010 PF03143 Elongation factor Tu C-terminal domain IM40_02010 PF03144 Elongation factor Tu domain 2 IM40_02010 PF00009 Elongation factor Tu GTP binding domain IM40_02015 PF00338 Ribosomal protein S10p/S20e IM40_02020 PF00297 Ribosomal protein L3 IM40_02025 PF00573 Ribosomal protein L4/L1 family IM40_02030 PF00276 Ribosomal protein L23 IM40_02035 PF00181 Ribosomal Proteins L2, RNA binding domain IM40_02035 PF03947 Ribosomal Proteins L2, C-terminal domain IM40_02040 PF00203 Ribosomal protein S19 IM40_02045 PF00237 Ribosomal protein L22p/L17e IM40_02050 PF00189 Ribosomal protein S3, C-terminal domain IM40_02050 PF07650 KH domain IM40_02055 PF00252 Ribosomal protein L16p/L10e IM40_02060 PF00831 Ribosomal L29 protein IM40_02065 PF00366 Ribosomal protein S17 IM40_02070 PF00238 Ribosomal protein L14p/L23e IM40_02075 PF00467 KOW motif IM40_02075 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IM40_02080 PF00673 ribosomal L5P family C-terminus IM40_02080 PF00281 Ribosomal protein L5 IM40_02085 PF00253 Ribosomal protein S14p/S29e IM40_02090 PF00410 Ribosomal protein S8 IM40_02095 PF00347 Ribosomal protein L6 IM40_02100 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IM40_02105 PF00333 Ribosomal protein S5, N-terminal domain IM40_02105 PF03719 Ribosomal protein S5, C-terminal domain IM40_02110 PF00327 Ribosomal protein L30p/L7e IM40_02115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IM40_02120 PF00344 SecY translocase IM40_02125 PF05191 Adenylate kinase, active site lid IM40_02130 PF00416 Ribosomal protein S13/S18 IM40_02135 PF00411 Ribosomal protein S11 IM40_02140 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IM40_02140 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IM40_02140 PF01000 RNA polymerase Rpb3/RpoA insert domain IM40_02145 PF01196 Ribosomal protein L17 IM40_02150 PF13180 PDZ domain IM40_02150 PF17820 PDZ domain IM40_02155 PF16193 AAA C-terminal domain IM40_02155 PF00004 ATPase family associated with various cellular activities (AAA) IM40_02155 PF12002 MgsA AAA+ ATPase C terminal IM40_02165 PF02661 Fic/DOC family IM40_02165 PF12728 Helix-turn-helix domain IM40_02180 PF03466 LysR substrate binding domain IM40_02180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_02205 PF17841 BID domain of Bartonella effector protein (Bep) IM40_02205 PF03389 MobA/MobL family IM40_02205 PF01443 Viral (Superfamily 1) RNA helicase IM40_02280 PF06834 TraU protein IM40_02370 PF05016 ParE toxin of type II toxin-antitoxin system, parDE IM40_02385 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain IM40_02385 PF12706 Beta-lactamase superfamily domain IM40_02390 PF01209 ubiE/COQ5 methyltransferase family IM40_02410 PF13193 AMP-binding enzyme C-terminal domain IM40_02410 PF00668 Condensation domain IM40_02410 PF00550 Phosphopantetheine attachment site IM40_02410 PF00975 Thioesterase domain IM40_02410 PF00501 AMP-binding enzyme IM40_02415 PF00501 AMP-binding enzyme IM40_02415 PF13193 AMP-binding enzyme C-terminal domain IM40_02415 PF00668 Condensation domain IM40_02415 PF00550 Phosphopantetheine attachment site IM40_02420 PF00550 Phosphopantetheine attachment site IM40_02420 PF00501 AMP-binding enzyme IM40_02420 PF13193 AMP-binding enzyme C-terminal domain IM40_02420 PF00668 Condensation domain IM40_02450 PF01329 Pterin 4 alpha carbinolamine dehydratase IM40_02500 PF01527 Transposase IM40_02505 PF00501 AMP-binding enzyme IM40_02505 PF13193 AMP-binding enzyme C-terminal domain IM40_02505 PF00668 Condensation domain IM40_02505 PF00550 Phosphopantetheine attachment site IM40_02515 PF10502 Signal peptidase, peptidase S26 IM40_02580 PF00854 POT family IM40_02585 PF00750 tRNA synthetases class I (R) IM40_02585 PF05746 DALR anticodon binding domain IM40_02585 PF03485 Arginyl tRNA synthetase N terminal domain IM40_02805 PF02381 MraZ protein, putative antitoxin-like IM40_02810 PF01795 MraW methylase family IM40_02825 PF08245 Mur ligase middle domain IM40_02825 PF02875 Mur ligase family, glutamate ligase domain IM40_02825 PF01225 Mur ligase family, catalytic domain IM40_02830 PF01225 Mur ligase family, catalytic domain IM40_02830 PF08245 Mur ligase middle domain IM40_02830 PF02875 Mur ligase family, glutamate ligase domain IM40_02835 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IM40_02835 PF00953 Glycosyl transferase family 4 IM40_02840 PF08245 Mur ligase middle domain IM40_02845 PF01098 Cell cycle protein IM40_02850 PF03033 Glycosyltransferase family 28 N-terminal domain IM40_02850 PF04101 Glycosyltransferase family 28 C-terminal domain IM40_02855 PF08245 Mur ligase middle domain IM40_02855 PF01225 Mur ligase family, catalytic domain IM40_02855 PF02875 Mur ligase family, glutamate ligase domain IM40_02860 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IM40_02860 PF01565 FAD binding domain IM40_02865 PF01820 D-ala D-ala ligase N-terminus IM40_02865 PF07478 D-ala D-ala ligase C-terminus IM40_02870 PF03799 Cell division protein FtsQ IM40_02870 PF08478 POTRA domain, FtsQ-type IM40_02875 PF02491 SHS2 domain inserted in FTSA IM40_02880 PF00091 Tubulin/FtsZ family, GTPase domain IM40_02880 PF12327 FtsZ family, C-terminal domain IM40_02885 PF13302 Acetyltransferase (GNAT) domain IM40_02900 PF00490 Delta-aminolevulinic acid dehydratase IM40_02920 PF03219 TLC ATP/ADP transporter IM40_02930 PF01467 Cytidylyltransferase-like IM40_02940 PF00521 DNA gyrase/topoisomerase IV, subunit A IM40_02940 PF03989 DNA gyrase C-terminal domain, beta-propeller IM40_02945 PF00436 Single-strand binding protein family IM40_02955 PF00216 Bacterial DNA-binding protein IM40_02970 PF04860 Phage portal protein IM40_03010 PF00117 Glutamine amidotransferase class-I IM40_03010 PF00958 GMP synthase C terminal domain IM40_03010 PF13673 Acetyltransferase (GNAT) domain IM40_03010 PF13302 Acetyltransferase (GNAT) domain IM40_03010 PF03352 Methyladenine glycosylase IM40_03015 PF10415 Fumarase C C-terminus IM40_03015 PF00206 Lyase IM40_03025 PF14437 MafB19-like deaminase IM40_03030 PF00005 ABC transporter IM40_03035 PF12704 MacB-like periplasmic core domain IM40_03035 PF02687 FtsX-like permease family IM40_03040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IM40_03040 PF03129 Anticodon binding domain IM40_03055 PF04379 ApaG domain IM40_03060 PF03061 Thioesterase superfamily IM40_03065 PF01618 MotA/TolQ/ExbB proton channel family IM40_03095 PF07676 WD40-like Beta Propeller Repeat IM40_03095 PF04052 TolB amino-terminal domain IM40_03100 PF00691 OmpA family IM40_03105 PF05198 Translation initiation factor IF-3, N-terminal domain IM40_03105 PF00707 Translation initiation factor IF-3, C-terminal domain IM40_03110 PF02824 TGS domain IM40_03110 PF03129 Anticodon binding domain IM40_03110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IM40_03110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IM40_03130 PF00121 Triosephosphate isomerase IM40_03145 PF06418 CTP synthase N-terminus IM40_03145 PF00117 Glutamine amidotransferase class-I IM40_03150 PF00793 DAHP synthetase I family IM40_03180 PF13193 AMP-binding enzyme C-terminal domain IM40_03180 PF16177 Acetyl-coenzyme A synthetase N-terminus IM40_03180 PF00501 AMP-binding enzyme IM40_03185 PF01250 Ribosomal protein S6 IM40_03190 PF01084 Ribosomal protein S18 IM40_03210 PF00772 DnaB-like helicase N terminal domain IM40_03210 PF03796 DnaB-like helicase C terminal domain IM40_03250 PF00692 dUTPase IM40_03270 PF05088 Bacterial NAD-glutamate dehydrogenase IM40_03275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IM40_03275 PF14572 Phosphoribosyl synthetase-associated domain IM40_03295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IM40_03300 PF12802 MarR family IM40_03320 PF03477 ATP cone domain IM40_03325 PF00464 Serine hydroxymethyltransferase IM40_03335 PF02632 BioY family IM40_03350 PF00829 Ribosomal prokaryotic L21 protein IM40_03355 PF01016 Ribosomal L27 protein IM40_03390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IM40_03390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IM40_03395 PF00293 NUDIX domain IM40_03400 PF03572 Peptidase family S41 IM40_03400 PF13180 PDZ domain IM40_03405 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IM40_03405 PF01676 Metalloenzyme superfamily IM40_03410 PF01029 NusB family IM40_03425 PF00578 AhpC/TSA family IM40_03435 PF00013 KH domain IM40_03435 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IM40_03435 PF01138 3' exoribonuclease family, domain 1 IM40_03435 PF00575 S1 RNA binding domain IM40_03435 PF03725 3' exoribonuclease family, domain 2 IM40_03440 PF00312 Ribosomal protein S15 IM40_03445 PF01509 TruB family pseudouridylate synthase (N terminal domain) IM40_03445 PF16198 tRNA pseudouridylate synthase B C-terminal domain IM40_03445 PF09157 Pseudouridine synthase II TruB, C-terminal IM40_03525 PF13361 UvrD-like helicase C-terminal domain IM40_03525 PF00580 UvrD/REP helicase N-terminal domain IM40_03540 PF07690 Major Facilitator Superfamily IM40_03605 PF01066 CDP-alcohol phosphatidyltransferase IM40_03610 PF08459 UvrC Helix-hairpin-helix N-terminal IM40_03610 PF02151 UvrB/uvrC motif IM40_03610 PF12826 Helix-hairpin-helix motif IM40_03610 PF01541 GIY-YIG catalytic domain IM40_03625 PF00849 RNA pseudouridylate synthase IM40_03630 PF04545 Sigma-70, region 4 IM40_03630 PF04542 Sigma-70 region 2 IM40_03630 PF00140 Sigma-70 factor, region 1.2 IM40_03635 PF07733 Bacterial DNA polymerase III alpha NTPase domain IM40_03635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IM40_03635 PF02811 PHP domain IM40_03635 PF14579 Helix-hairpin-helix motif IM40_03640 PF01510 N-acetylmuramoyl-L-alanine amidase IM40_03645 PF10090 Histidine phosphotransferase C-terminal domain IM40_03650 PF03167 Uracil DNA glycosylase superfamily IM40_03655 PF01040 UbiA prenyltransferase family IM40_03670 PF00533 BRCA1 C Terminus (BRCT) domain IM40_03670 PF12826 Helix-hairpin-helix motif IM40_03670 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IM40_03670 PF03120 NAD-dependent DNA ligase OB-fold domain IM40_03670 PF01653 NAD-dependent DNA ligase adenylation domain IM40_03675 PF02463 RecF/RecN/SMC N terminal domain IM40_03680 PF13525 Outer membrane lipoprotein IM40_03685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IM40_03700 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IM40_03740 PF04070 Domain of unknown function (DUF378) IM40_03775 PF00216 Bacterial DNA-binding protein IM40_03870 PF12951 Passenger-associated-transport-repeat IM40_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_03875 PF03466 LysR substrate binding domain IM40_03890 PF03466 LysR substrate binding domain IM40_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_03910 PF00069 Protein kinase domain IM40_03920 PF00561 alpha/beta hydrolase fold IM40_03925 PF01427 D-ala-D-ala dipeptidase IM40_03960 PF12706 Beta-lactamase superfamily domain IM40_03960 PF00753 Metallo-beta-lactamase superfamily IM40_04030 PF00749 tRNA synthetases class I (E and Q), catalytic domain IM40_04035 PF09190 DALR domain IM40_04035 PF01406 tRNA synthetases class I (C) catalytic domain IM40_04045 PF01202 Shikimate kinase IM40_04055 PF02899 Phage integrase, N-terminal SAM-like domain IM40_04055 PF00589 Phage integrase family IM40_04060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IM40_04075 PF00483 Nucleotidyl transferase IM40_04080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IM40_04080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IM40_04080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IM40_04100 PF01300 Telomere recombination IM40_04100 PF03481 Putative GTP-binding controlling metal-binding IM40_04110 PF01678 Diaminopimelate epimerase IM40_04115 PF04055 Radical SAM superfamily IM40_04115 PF00919 Uncharacterized protein family UPF0004 IM40_04120 PF02881 SRP54-type protein, helical bundle domain IM40_04120 PF00448 SRP54-type protein, GTPase domain IM40_04125 PF01258 Prokaryotic dksA/traR C4-type zinc finger IM40_04130 PF02511 Thymidylate synthase complementing protein IM40_04165 PF00266 Aminotransferase class-V IM40_04180 PF02575 YbaB/EbfC DNA-binding family IM40_04185 PF13662 Toprim domain IM40_04185 PF02132 RecR protein IM40_04190 PF00216 Bacterial DNA-binding protein IM40_04195 PF00265 Thymidine kinase IM40_04210 PF04452 RNA methyltransferase IM40_04215 PF00924 Mechanosensitive ion channel IM40_04220 PF02386 Cation transport protein IM40_04250 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IM40_04275 PF01165 Ribosomal protein S21 IM40_04280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IM40_04280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IM40_04285 PF02779 Transketolase, pyrimidine binding domain IM40_04285 PF02780 Transketolase, C-terminal domain IM40_04285 PF00456 Transketolase, thiamine diphosphate binding domain IM40_04290 PF14815 NUDIX domain IM40_04290 PF00730 HhH-GPD superfamily base excision DNA repair protein IM40_04300 PF17848 Acetyl-coA carboxylase zinc finger domain IM40_04300 PF01039 Carboxyl transferase domain IM40_04320 PF01145 SPFH domain / Band 7 family IM40_04320 PF16200 C-terminal region of band_7 IM40_04325 PF01471 Putative peptidoglycan binding domain IM40_04325 PF03734 L,D-transpeptidase catalytic domain IM40_04335 PF01177 Asp/Glu/Hydantoin racemase IM40_04345 PF02743 Cache domain IM40_04345 PF00211 Adenylate and Guanylate cyclase catalytic domain IM40_04345 PF00672 HAMP domain IM40_04350 PF00375 Sodium:dicarboxylate symporter family IM40_04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_04355 PF03466 LysR substrate binding domain IM40_04365 PF00528 Binding-protein-dependent transport system inner membrane component IM40_04370 PF00528 Binding-protein-dependent transport system inner membrane component IM40_04375 PF08402 TOBE domain IM40_04375 PF00005 ABC transporter IM40_04380 PF07690 Major Facilitator Superfamily IM40_04385 PF00664 ABC transporter transmembrane region IM40_04385 PF00005 ABC transporter IM40_04390 PF02867 Ribonucleotide reductase, barrel domain IM40_04390 PF08471 Class II vitamin B12-dependent ribonucleotide reductase IM40_04405 PF02348 Cytidylyltransferase IM40_04410 PF03652 Holliday junction resolvase IM40_04415 PF02594 Uncharacterised ACR, YggU family COG1872 IM40_04430 PF00950 ABC 3 transport family IM40_04435 PF00005 ABC transporter IM40_04440 PF00953 Glycosyl transferase family 4 IM40_04455 PF02224 Cytidylate kinase IM40_04470 PF03462 PCRF domain IM40_04470 PF00472 RF-1 domain IM40_04525 PF01255 Putative undecaprenyl diphosphate synthase IM40_04530 PF01765 Ribosome recycling factor IM40_04540 PF00889 Elongation factor TS IM40_04545 PF00318 Ribosomal protein S2 IM40_04555 PF03458 UPF0126 domain IM40_04570 PF13462 Thioredoxin IM40_04570 PF06965 Na+/H+ antiporter 1 IM40_04575 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus IM40_04575 PF01048 Phosphorylase superfamily IM40_04580 PF12146 Serine aminopeptidase, S33 IM40_04585 PF00005 ABC transporter IM40_04605 PF00570 HRDC domain IM40_04605 PF01612 3'-5' exonuclease IM40_04610 PF00152 tRNA synthetases class II (D, K and N) IM40_04610 PF02938 GAD domain IM40_04610 PF01336 OB-fold nucleic acid binding domain IM40_04615 PF17827 PrmC N-terminal domain IM40_04615 PF13847 Methyltransferase domain IM40_04620 PF03462 PCRF domain IM40_04620 PF00472 RF-1 domain IM40_04625 PF03129 Anticodon binding domain IM40_04625 PF13393 Histidyl-tRNA synthetase IM40_04635 PF03060 Nitronate monooxygenase IM40_04645 PF02405 Permease MlaE IM40_04650 PF00005 ABC transporter IM40_04655 PF06745 KaiC IM40_04655 PF18073 Rubredoxin metal binding domain IM40_04660 PF02674 Colicin V production protein IM40_04690 PF02233 NAD(P) transhydrogenase beta subunit IM40_04695 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IM40_04700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IM40_04700 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IM40_04705 PF13145 PPIC-type PPIASE domain IM40_04735 PF00326 Prolyl oligopeptidase family IM40_04755 PF00664 ABC transporter transmembrane region IM40_04755 PF00005 ABC transporter IM40_04770 PF00733 Asparagine synthase IM40_04770 PF13537 Glutamine amidotransferase domain IM40_04775 PF02390 Putative methyltransferase IM40_04785 PF00571 CBS domain IM40_04785 PF03471 Transporter associated domain IM40_04790 PF02130 Uncharacterized protein family UPF0054 IM40_04795 PF02562 PhoH-like protein IM40_04800 PF04055 Radical SAM superfamily IM40_04800 PF00919 Uncharacterized protein family UPF0004 IM40_04800 PF01938 TRAM domain IM40_04805 PF05443 ROS/MUCR transcriptional regulator protein IM40_04810 PF00958 GMP synthase C terminal domain IM40_04810 PF00117 Glutamine amidotransferase class-I IM40_04810 PF03352 Methyladenine glycosylase IM40_04810 PF13302 Acetyltransferase (GNAT) domain IM40_04810 PF13673 Acetyltransferase (GNAT) domain IM40_04815 PF00814 Glycoprotease family IM40_04840 PF13360 PQQ-like domain IM40_04845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IM40_04845 PF01926 50S ribosome-binding GTPase IM40_04850 PF00106 short chain dehydrogenase IM40_04890 PF01702 Queuine tRNA-ribosyltransferase IM40_04900 PF00830 Ribosomal L28 family IM40_04905 PF01380 SIS domain IM40_04910 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_04910 PF12804 MobA-like NTP transferase domain IM40_04915 PF05951 Bacterial protein of unknown function (DUF882) IM40_04925 PF00497 Bacterial extracellular solute-binding proteins, family 3 IM40_04935 PF17209 Hfq protein IM40_04950 PF00365 Phosphofructokinase IM40_04970 PF01632 Ribosomal protein L35 IM40_04975 PF00453 Ribosomal protein L20 IM40_04980 PF03466 LysR substrate binding domain IM40_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_04990 PF01409 tRNA synthetases class II core domain (F) IM40_04990 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IM40_04995 PF01588 Putative tRNA binding domain IM40_04995 PF03147 Ferredoxin-fold anticodon binding domain IM40_04995 PF03484 tRNA synthetase B5 domain IM40_04995 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IM40_04995 PF03483 B3/4 domain IM40_05000 PF00009 Elongation factor Tu GTP binding domain IM40_05000 PF03144 Elongation factor Tu domain 2 IM40_05000 PF06421 GTP-binding protein LepA C-terminus IM40_05000 PF00679 Elongation factor G C-terminus IM40_05010 PF00583 Acetyltransferase (GNAT) family IM40_05050 PF01370 NAD dependent epimerase/dehydratase family IM40_05055 PF01790 Prolipoprotein diacylglyceryl transferase IM40_05075 PF00213 ATP synthase delta (OSCP) subunit IM40_05080 PF02874 ATP synthase alpha/beta family, beta-barrel domain IM40_05080 PF00306 ATP synthase alpha/beta chain, C terminal domain IM40_05080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IM40_05085 PF00231 ATP synthase IM40_05090 PF02874 ATP synthase alpha/beta family, beta-barrel domain IM40_05090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IM40_05095 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IM40_05105 PF00892 EamA-like transporter family IM40_05115 PF00085 Thioredoxin IM40_05125 PF00512 His Kinase A (phospho-acceptor) domain IM40_05125 PF00989 PAS fold IM40_05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_05130 PF00557 Metallopeptidase family M24 IM40_05130 PF01321 Creatinase/Prolidase N-terminal domain IM40_05135 PF00881 Nitroreductase family IM40_05155 PF03952 Enolase, N-terminal domain IM40_05155 PF00113 Enolase, C-terminal TIM barrel domain IM40_05170 PF13443 Cro/C1-type HTH DNA-binding domain IM40_05195 PF00005 ABC transporter IM40_05200 PF00528 Binding-protein-dependent transport system inner membrane component IM40_05210 PF00216 Bacterial DNA-binding protein IM40_05220 PF03572 Peptidase family S41 IM40_05220 PF07676 WD40-like Beta Propeller Repeat IM40_05220 PF14684 Tricorn protease C1 domain IM40_05220 PF14685 Tricorn protease PDZ domain IM40_05230 PF12706 Beta-lactamase superfamily domain IM40_05230 PF03099 Biotin/lipoate A/B protein ligase family IM40_05235 PF01026 TatD related DNase IM40_05245 PF02223 Thymidylate kinase IM40_05250 PF07943 Penicillin-binding protein 5, C-terminal domain IM40_05250 PF00768 D-alanyl-D-alanine carboxypeptidase IM40_05260 PF02698 DUF218 domain IM40_05270 PF03749 Sugar fermentation stimulation protein RE domain IM40_05270 PF17746 SfsA N-terminal OB domain IM40_05275 PF00557 Metallopeptidase family M24 IM40_05280 PF17770 Ribonuclease J C-terminal domain IM40_05280 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IM40_05280 PF12706 Beta-lactamase superfamily domain IM40_05285 PF03309 Type III pantothenate kinase IM40_05290 PF03099 Biotin/lipoate A/B protein ligase family IM40_05290 PF02237 Biotin protein ligase C terminal domain IM40_05295 PF00361 Proton-conducting membrane transporter IM40_05300 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IM40_05300 PF00361 Proton-conducting membrane transporter IM40_05305 PF00361 Proton-conducting membrane transporter IM40_05305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IM40_05310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IM40_05315 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IM40_05330 PF04085 rod shape-determining protein MreC IM40_05350 PF00364 Biotin-requiring enzyme IM40_05350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IM40_05350 PF02817 e3 binding domain IM40_05360 PF00676 Dehydrogenase E1 component IM40_05365 PF01245 Ribosomal protein L19 IM40_05370 PF01746 tRNA (Guanine-1)-methyltransferase IM40_05380 PF00886 Ribosomal protein S16 IM40_05385 PF02881 SRP54-type protein, helical bundle domain IM40_05385 PF00448 SRP54-type protein, GTPase domain IM40_05385 PF02978 Signal peptide binding domain IM40_05390 PF04070 Domain of unknown function (DUF378) IM40_05400 PF00923 Transaldolase/Fructose-6-phosphate aldolase IM40_05405 PF02899 Phage integrase, N-terminal SAM-like domain IM40_05405 PF00589 Phage integrase family IM40_05410 PF17760 UvrA interaction domain IM40_05410 PF17755 UvrA DNA-binding domain IM40_05445 PF00575 S1 RNA binding domain IM40_05445 PF08529 NusA N-terminal domain IM40_05445 PF13184 NusA-like KH domain IM40_05450 PF04760 Translation initiation factor IF-2, N-terminal region IM40_05450 PF08364 Bacterial translation initiation factor IF-2 associated region IM40_05450 PF03144 Elongation factor Tu domain 2 IM40_05450 PF00009 Elongation factor Tu GTP binding domain IM40_05450 PF11987 Translation-initiation factor 2 IM40_05455 PF02033 Ribosome-binding factor A IM40_05470 PF00753 Metallo-beta-lactamase superfamily IM40_05470 PF03772 Competence protein IM40_05475 PF00749 tRNA synthetases class I (E and Q), catalytic domain IM40_05480 PF00285 Citrate synthase, C-terminal domain IM40_05490 PF02673 Bacitracin resistance protein BacA IM40_05495 PF00043 Glutathione S-transferase, C-terminal domain IM40_05495 PF13417 Glutathione S-transferase, N-terminal domain IM40_05500 PF10431 C-terminal, D2-small domain, of ClpB protein IM40_05500 PF00004 ATPase family associated with various cellular activities (AAA) IM40_05500 PF02861 Clp amino terminal domain, pathogenicity island component IM40_05500 PF17871 AAA lid domain IM40_05500 PF07724 AAA domain (Cdc48 subfamily) IM40_05530 PF01926 50S ribosome-binding GTPase IM40_05530 PF06071 Protein of unknown function (DUF933) IM40_05535 PF01195 Peptidyl-tRNA hydrolase IM40_05540 PF01386 Ribosomal L25p family IM40_05540 PF14693 Ribosomal protein TL5, C-terminal domain IM40_05545 PF02719 Polysaccharide biosynthesis protein IM40_05550 PF01370 NAD dependent epimerase/dehydratase family IM40_05565 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IM40_05565 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IM40_05570 PF00814 Glycoprotease family IM40_05580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IM40_05585 PF00510 Cytochrome c oxidase subunit III IM40_05595 PF00675 Insulinase (Peptidase family M16) IM40_05595 PF05193 Peptidase M16 inactive domain IM40_05600 PF00999 Sodium/hydrogen exchanger family IM40_05600 PF02254 TrkA-N domain IM40_05615 PF01812 5-formyltetrahydrofolate cyclo-ligase family IM40_05620 PF13277 YmdB-like protein IM40_05640 PF01351 Ribonuclease HII IM40_05650 PF00578 AhpC/TSA family IM40_05660 PF01145 SPFH domain / Band 7 family IM40_05665 PF13180 PDZ domain IM40_05670 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IM40_05690 PF02082 Transcriptional regulator IM40_05695 PF00266 Aminotransferase class-V IM40_05700 PF00266 Aminotransferase class-V IM40_05705 PF01592 NifU-like N terminal domain IM40_05710 PF01521 Iron-sulphur cluster biosynthesis IM40_05720 PF00012 Hsp70 protein IM40_05750 PF01515 Phosphate acetyl/butaryl transferase IM40_05750 PF03949 Malic enzyme, NAD binding domain IM40_05750 PF00390 Malic enzyme, N-terminal domain IM40_05755 PF01769 Divalent cation transporter IM40_05755 PF00571 CBS domain IM40_05755 PF03448 MgtE intracellular N domain IM40_05760 PF02803 Thiolase, C-terminal domain IM40_05760 PF00108 Thiolase, N-terminal domain IM40_05790 PF13438 Domain of unknown function (DUF4113) IM40_05790 PF11799 impB/mucB/samB family C-terminal domain IM40_05790 PF00817 impB/mucB/samB family IM40_05830 PF13276 HTH-like domain IM40_05830 PF13683 Integrase core domain IM40_05850 PF00072 Response regulator receiver domain IM40_05850 PF09456 RcsC Alpha-Beta-Loop (ABL) IM40_05850 PF00512 His Kinase A (phospho-acceptor) domain IM40_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_05855 PF02371 Transposase IS116/IS110/IS902 family IM40_05855 PF01548 Transposase IM40_05895 PF00854 POT family IM40_05905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_05905 PF03466 LysR substrate binding domain IM40_05935 PF01207 Dihydrouridine synthase (Dus) IM40_05940 PF00072 Response regulator receiver domain IM40_05940 PF02954 Bacterial regulatory protein, Fis family IM40_05940 PF00158 Sigma-54 interaction domain IM40_05950 PF00158 Sigma-54 interaction domain IM40_05950 PF02954 Bacterial regulatory protein, Fis family IM40_05950 PF00072 Response regulator receiver domain IM40_05955 PF02254 TrkA-N domain IM40_05955 PF02080 TrkA-C domain IM40_05965 PF00072 Response regulator receiver domain IM40_05990 PF04972 BON domain IM40_06005 PF00596 Class II Aldolase and Adducin N-terminal domain IM40_06135 PF14718 Soluble lytic murein transglycosylase L domain IM40_06135 PF01464 Transglycosylase SLT domain IM40_06140 PF00701 Dihydrodipicolinate synthetase family IM40_06145 PF01668 SmpB protein IM40_06160 PF04972 BON domain IM40_06170 PF05746 DALR anticodon binding domain IM40_06170 PF02092 Glycyl-tRNA synthetase beta subunit IM40_06175 PF02091 Glycyl-tRNA synthetase alpha subunit IM40_06210 PF00623 RNA polymerase Rpb1, domain 2 IM40_06210 PF04983 RNA polymerase Rpb1, domain 3 IM40_06210 PF05000 RNA polymerase Rpb1, domain 4 IM40_06210 PF04997 RNA polymerase Rpb1, domain 1 IM40_06210 PF04998 RNA polymerase Rpb1, domain 5 IM40_06215 PF04560 RNA polymerase Rpb2, domain 7 IM40_06215 PF00562 RNA polymerase Rpb2, domain 6 IM40_06215 PF04561 RNA polymerase Rpb2, domain 2 IM40_06215 PF04565 RNA polymerase Rpb2, domain 3 IM40_06215 PF04563 RNA polymerase beta subunit IM40_06215 PF10385 RNA polymerase beta subunit external 1 domain IM40_06220 PF16320 Ribosomal protein L7/L12 dimerisation domain IM40_06220 PF00542 Ribosomal protein L7/L12 C-terminal domain IM40_06225 PF00466 Ribosomal protein L10 IM40_06230 PF00687 Ribosomal protein L1p/L10e family IM40_06235 PF03946 Ribosomal protein L11, N-terminal domain IM40_06235 PF00298 Ribosomal protein L11, RNA binding domain IM40_06240 PF02357 Transcription termination factor nusG IM40_06240 PF00467 KOW motif IM40_06255 PF03143 Elongation factor Tu C-terminal domain IM40_06255 PF03144 Elongation factor Tu domain 2 IM40_06255 PF00009 Elongation factor Tu GTP binding domain IM40_06275 PF00156 Phosphoribosyl transferase domain IM40_06280 PF00462 Glutaredoxin IM40_06285 PF00216 Bacterial DNA-binding protein IM40_06300 PF03364 Polyketide cyclase / dehydrase and lipid transport IM40_06305 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IM40_06305 PF04055 Radical SAM superfamily IM40_06310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IM40_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_06315 PF00072 Response regulator receiver domain IM40_06315 PF00486 Transcriptional regulatory protein, C terminal IM40_06325 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IM40_06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_06330 PF00512 His Kinase A (phospho-acceptor) domain IM40_06355 PF01192 RNA polymerase Rpb6 IM40_06360 PF04607 Region found in RelA / SpoT proteins IM40_06360 PF13291 ACT domain IM40_06360 PF02824 TGS domain IM40_06365 PF00004 ATPase family associated with various cellular activities (AAA) IM40_06365 PF05362 Lon protease (S16) C-terminal proteolytic domain IM40_06365 PF02190 ATP-dependent protease La (LON) substrate-binding domain IM40_06370 PF10431 C-terminal, D2-small domain, of ClpB protein IM40_06370 PF06689 ClpX C4-type zinc finger IM40_06370 PF07724 AAA domain (Cdc48 subfamily) IM40_06375 PF00574 Clp protease IM40_06380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IM40_06380 PF05698 Bacterial trigger factor protein (TF) C-terminus IM40_06380 PF05697 Bacterial trigger factor protein (TF) IM40_06400 PF01434 Peptidase family M41 IM40_06400 PF00004 ATPase family associated with various cellular activities (AAA) IM40_06400 PF17862 AAA+ lid domain IM40_06400 PF06480 FtsH Extracellular IM40_06475 PF02245 Methylpurine-DNA glycosylase (MPG) IM40_06490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_06490 PF03466 LysR substrate binding domain IM40_06525 PF01131 DNA topoisomerase IM40_06525 PF13368 Topoisomerase C-terminal repeat IM40_06525 PF01396 Topoisomerase DNA binding C4 zinc finger IM40_06525 PF01751 Toprim domain IM40_06530 PF17782 DprA winged helix domain IM40_06530 PF02481 DNA recombination-mediator protein A IM40_06535 PF02660 Glycerol-3-phosphate acyltransferase IM40_06540 PF08032 RNA 2'-O ribose methyltransferase substrate binding IM40_06540 PF00588 SpoU rRNA Methylase family IM40_06560 PF02630 SCO1/SenC IM40_06570 PF07859 alpha/beta hydrolase fold IM40_06585 PF02502 Ribose/Galactose Isomerase IM40_06620 PF00633 Helix-hairpin-helix motif IM40_06620 PF00730 HhH-GPD superfamily base excision DNA repair protein IM40_06620 PF10576 Iron-sulfur binding domain of endonuclease III IM40_06635 PF00486 Transcriptional regulatory protein, C terminal IM40_06635 PF00072 Response regulator receiver domain IM40_06640 PF03219 TLC ATP/ADP transporter IM40_06655 PF02887 Pyruvate kinase, alpha/beta domain IM40_06655 PF00224 Pyruvate kinase, barrel domain IM40_06660 PF00892 EamA-like transporter family IM40_06665 PF00117 Glutamine amidotransferase class-I IM40_06670 PF00163 Ribosomal protein S4/S9 N-terminal domain IM40_06670 PF01479 S4 domain IM40_06680 PF01113 Dihydrodipicolinate reductase, N-terminus IM40_06680 PF05173 Dihydrodipicolinate reductase, C-terminus IM40_06715 PF01330 RuvA N terminal domain IM40_06715 PF07499 RuvA, C-terminal domain IM40_06720 PF02075 Crossover junction endodeoxyribonuclease RuvC IM40_06725 PF01709 Transcriptional regulator IM40_06770 PF06233 Usg-like family IM40_06780 PF02167 Cytochrome C1 family IM40_06785 PF00032 Cytochrome b(C-terminal)/b6/petD IM40_06785 PF00033 Cytochrome b/b6/petB IM40_06790 PF00355 Rieske [2Fe-2S] domain IM40_06790 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IM40_06810 PF03466 LysR substrate binding domain IM40_06810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_06820 PF01609 Transposase DDE domain IM40_06840 PF00462 Glutaredoxin IM40_06875 PF01106 NifU-like domain IM40_06885 PF00579 tRNA synthetases class I (W and Y) IM40_06890 PF01012 Electron transfer flavoprotein domain IM40_06895 PF00766 Electron transfer flavoprotein FAD-binding domain IM40_06895 PF01012 Electron transfer flavoprotein domain IM40_06915 PF02609 Exonuclease VII small subunit IM40_06935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IM40_06935 PF00289 Biotin carboxylase, N-terminal domain IM40_06935 PF02785 Biotin carboxylase C-terminal domain IM40_06940 PF00364 Biotin-requiring enzyme IM40_06945 PF12705 PD-(D/E)XK nuclease superfamily IM40_06945 PF00580 UvrD/REP helicase N-terminal domain IM40_06945 PF13361 UvrD-like helicase C-terminal domain IM40_06950 PF12705 PD-(D/E)XK nuclease superfamily IM40_06955 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IM40_06960 PF01648 4'-phosphopantetheinyl transferase superfamily IM40_06965 PF00579 tRNA synthetases class I (W and Y) IM40_06970 PF03023 Lipid II flippase MurJ IM40_06980 PF03023 Lipid II flippase MurJ IM40_07020 PF00892 EamA-like transporter family IM40_07050 PF00488 MutS domain V IM40_07050 PF01624 MutS domain I IM40_07050 PF05188 MutS domain II IM40_07050 PF05190 MutS family domain IV IM40_07050 PF05192 MutS domain III IM40_07055 PF01494 FAD binding domain IM40_07060 PF00075 RNase H IM40_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_07085 PF00162 Phosphoglycerate kinase IM40_07100 PF01297 Zinc-uptake complex component A periplasmic IM40_07105 PF00950 ABC 3 transport family IM40_07120 PF00005 ABC transporter IM40_07140 PF01553 Acyltransferase IM40_07155 PF01161 Phosphatidylethanolamine-binding protein IM40_07170 PF13840 ACT domain IM40_07170 PF01842 ACT domain IM40_07170 PF00696 Amino acid kinase family IM40_07190 PF01138 3' exoribonuclease family, domain 1 IM40_07190 PF03725 3' exoribonuclease family, domain 2 IM40_07195 PF01628 HrcA protein C terminal domain IM40_07200 PF01025 GrpE IM40_07210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IM40_07210 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_07215 PF00364 Biotin-requiring enzyme IM40_07215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IM40_07215 PF02817 e3 binding domain IM40_07220 PF00676 Dehydrogenase E1 component IM40_07220 PF16078 2-oxoglutarate dehydrogenase N-terminus IM40_07220 PF02779 Transketolase, pyrimidine binding domain IM40_07220 PF16870 2-oxoglutarate dehydrogenase C-terminal IM40_07230 PF00549 CoA-ligase IM40_07230 PF02629 CoA binding domain IM40_07235 PF08442 ATP-grasp domain IM40_07235 PF00549 CoA-ligase IM40_07240 PF00056 lactate/malate dehydrogenase, NAD binding domain IM40_07240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IM40_07245 PF02230 Phospholipase/Carboxylesterase IM40_07250 PF00892 EamA-like transporter family IM40_07260 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IM40_07265 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IM40_07270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IM40_07275 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IM40_07285 PF10531 SLBB domain IM40_07285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IM40_07285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IM40_07290 PF00384 Molybdopterin oxidoreductase IM40_07290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IM40_07290 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IM40_07295 PF00146 NADH dehydrogenase IM40_07300 PF12838 4Fe-4S dicluster domain IM40_07305 PF07690 Major Facilitator Superfamily IM40_07385 PF01595 Cyclin M transmembrane N-terminal domain IM40_07385 PF03471 Transporter associated domain IM40_07385 PF00571 CBS domain IM40_07410 PF00873 AcrB/AcrD/AcrF family IM40_07425 PF01478 Type IV leader peptidase family IM40_07425 PF06750 Bacterial Peptidase A24 N-terminal domain IM40_07440 PF13462 Thioredoxin IM40_07450 PF00005 ABC transporter IM40_07450 PF00664 ABC transporter transmembrane region IM40_07470 PF03485 Arginyl tRNA synthetase N terminal domain IM40_07470 PF05746 DALR anticodon binding domain IM40_07470 PF00750 tRNA synthetases class I (R) IM40_07510 PF01336 OB-fold nucleic acid binding domain IM40_07510 PF00152 tRNA synthetases class II (D, K and N) IM40_07520 PF01118 Semialdehyde dehydrogenase, NAD binding domain IM40_07520 PF02774 Semialdehyde dehydrogenase, dimerisation domain IM40_07530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IM40_07530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IM40_07565 PF00294 pfkB family carbohydrate kinase IM40_07575 PF00684 DnaJ central domain IM40_07575 PF01556 DnaJ C terminal domain IM40_07575 PF00226 DnaJ domain IM40_07585 PF00571 CBS domain IM40_07585 PF03471 Transporter associated domain IM40_07585 PF01595 Cyclin M transmembrane N-terminal domain IM40_07595 PF02355 Protein export membrane protein IM40_07595 PF07549 SecD/SecF GG Motif IM40_07600 PF02355 Protein export membrane protein IM40_07605 PF02699 Preprotein translocase subunit IM40_07615 PF01975 Survival protein SurE IM40_07620 PF02403 Seryl-tRNA synthetase N-terminal domain IM40_07620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IM40_07640 PF02163 Peptidase family M50 IM40_07650 PF01521 Iron-sulphur cluster biosynthesis IM40_07655 PF03372 Endonuclease/Exonuclease/phosphatase family IM40_07660 PF00694 Aconitase C-terminal domain IM40_07660 PF00330 Aconitase family (aconitate hydratase) IM40_07675 PF00892 EamA-like transporter family IM40_07695 PF17820 PDZ domain IM40_07695 PF02163 Peptidase family M50 IM40_07700 PF01103 Surface antigen IM40_07700 PF07244 Surface antigen variable number repeat IM40_07710 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_07710 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IM40_07715 PF07977 FabA-like domain IM40_07720 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_07720 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IM40_07725 PF17930 LpxI N-terminal domain IM40_07725 PF06230 LpxI C-terminal domain IM40_07730 PF02684 Lipid-A-disaccharide synthetase IM40_07735 PF03741 Integral membrane protein TerC family IM40_07760 PF10458 Valyl tRNA synthetase tRNA binding arm IM40_07760 PF00133 tRNA synthetases class I (I, L, M and V) IM40_07760 PF08264 Anticodon-binding domain of tRNA IM40_07765 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_07785 PF02308 MgtC family IM40_07790 PF01098 Cell cycle protein IM40_07815 PF03070 TENA/THI-4/PQQC family IM40_07815 PF02581 Thiamine monophosphate synthase IM40_07815 PF08543 Phosphomethylpyrimidine kinase IM40_07915 PF06834 TraU protein IM40_08125 PF12728 Helix-turn-helix domain IM40_08125 PF02661 Fic/DOC family IM40_08155 PF02586 SOS response associated peptidase (SRAP) IM40_08185 PF03466 LysR substrate binding domain IM40_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_08215 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain IM40_08215 PF14490 Helix-hairpin-helix containing domain IM40_08215 PF13538 UvrD-like helicase C-terminal domain IM40_08250 PF17841 BID domain of Bartonella effector protein (Bep) IM40_08250 PF03389 MobA/MobL family IM40_08250 PF01443 Viral (Superfamily 1) RNA helicase IM40_08285 PF01526 Tn3 transposase DDE domain IM40_08285 PF13700 Domain of unknown function (DUF4158) IM40_08335 PF01850 PIN domain IM40_08345 PF02371 Transposase IS116/IS110/IS902 family IM40_08345 PF01548 Transposase IM40_08360 PF02371 Transposase IS116/IS110/IS902 family IM40_08360 PF01548 Transposase IM40_08390 PF13018 Extended Signal Peptide of Type V secretion system IM40_08390 PF02661 Fic/DOC family IM40_08390 PF05860 haemagglutination activity domain IM40_08390 PF13332 Hemagglutinin repeat IM40_08390 PF03543 Yersinia/Haemophilus virulence surface antigen IM40_08395 PF13419 Haloacid dehalogenase-like hydrolase IM40_08460 PF13091 PLD-like domain IM40_08485 PF02586 SOS response associated peptidase (SRAP) IM40_08565 PF01548 Transposase IM40_08565 PF02371 Transposase IS116/IS110/IS902 family IM40_08595 PF06965 Na+/H+ antiporter 1 IM40_08605 PF13276 HTH-like domain IM40_08605 PF13333 Integrase core domain IM40_08605 PF00665 Integrase core domain IM40_08610 PF00398 Ribosomal RNA adenine dimethylase IM40_08615 PF00639 PPIC-type PPIASE domain IM40_08615 PF09312 SurA N-terminal domain IM40_08630 PF04453 LPS transport system D IM40_08630 PF03968 OstA-like protein IM40_08635 PF00534 Glycosyl transferases group 1 IM40_08635 PF13477 Glycosyl transferase 4-like IM40_08640 PF00834 Ribulose-phosphate 3 epimerase family IM40_08650 PF07690 Major Facilitator Superfamily IM40_08670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IM40_08675 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IM40_08685 PF00005 ABC transporter IM40_08685 PF00664 ABC transporter transmembrane region IM40_08715 PF00849 RNA pseudouridylate synthase IM40_08715 PF01479 S4 domain IM40_08720 PF03989 DNA gyrase C-terminal domain, beta-propeller IM40_08720 PF00521 DNA gyrase/topoisomerase IV, subunit A IM40_08725 PF02565 Recombination protein O C terminal IM40_08725 PF11967 Recombination protein O N terminal IM40_08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_08730 PF03466 LysR substrate binding domain IM40_08735 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IM40_08735 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IM40_08750 PF13580 SIS domain IM40_08755 PF01467 Cytidylyltransferase-like IM40_08755 PF00294 pfkB family carbohydrate kinase IM40_08815 PF13520 Amino acid permease IM40_08875 PF16671 Actin cross-linking domain IM40_08875 PF04717 Type VI secretion system, phage-baseplate injector IM40_08880 PF11953 Domain of unknown function (DUF3470) IM40_08880 PF00037 4Fe-4S binding domain IM40_08885 PF01177 Asp/Glu/Hydantoin racemase IM40_08895 PF00459 Inositol monophosphatase family IM40_08900 PF01132 Elongation factor P (EF-P) OB domain IM40_08900 PF08207 Elongation factor P (EF-P) KOW-like domain IM40_08900 PF09285 Elongation factor P, C-terminal IM40_08925 PF07517 SecA DEAD-like domain IM40_08925 PF02810 SEC-C motif IM40_08925 PF01043 SecA preprotein cross-linking domain IM40_08925 PF07516 SecA Wing and Scaffold domain IM40_08950 PF07722 Peptidase C26 IM40_08965 PF12100 Domain of unknown function (DUF3576) IM40_08970 PF08264 Anticodon-binding domain of tRNA IM40_08970 PF00133 tRNA synthetases class I (I, L, M and V) IM40_08970 PF13603 Leucyl-tRNA synthetase, Domain 2 IM40_08980 PF00155 Aminotransferase class I and II IM40_08985 PF00884 Sulfatase IM40_08985 PF08019 Phosphoethanolamine transferase EptA/EptB IM40_08990 PF01219 Prokaryotic diacylglycerol kinase IM40_09005 PF17762 HTH domain found in ParB protein IM40_09005 PF02195 ParB-like nuclease domain IM40_09010 PF13614 AAA domain IM40_09015 PF02527 rRNA small subunit methyltransferase G IM40_09020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IM40_09020 PF07497 Rho termination factor, RNA-binding domain IM40_09020 PF07498 Rho termination factor, N-terminal domain IM40_09030 PF00762 Ferrochelatase IM40_09035 PF01208 Uroporphyrinogen decarboxylase (URO-D) IM40_09050 PF01121 Dephospho-CoA kinase IM40_09055 PF00929 Exonuclease IM40_09060 PF02556 Preprotein translocase subunit SecB IM40_09065 PF04280 Tim44-like domain IM40_09090 PF03466 LysR substrate binding domain IM40_09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_09100 PF07724 AAA domain (Cdc48 subfamily) IM40_09100 PF00004 ATPase family associated with various cellular activities (AAA) IM40_09100 PF10431 C-terminal, D2-small domain, of ClpB protein IM40_09105 PF00227 Proteasome subunit IM40_09110 PF01230 HIT domain IM40_09115 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_09120 PF01510 N-acetylmuramoyl-L-alanine amidase IM40_09155 PF02021 Uncharacterised protein family UPF0102 IM40_09165 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IM40_09165 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IM40_09175 PF01078 Magnesium chelatase, subunit ChlI IM40_09175 PF13335 Magnesium chelatase, subunit ChlI C-terminal IM40_09185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IM40_09195 PF00890 FAD binding domain IM40_09195 PF02910 Fumarate reductase flavoprotein C-term IM40_09200 PF13085 2Fe-2S iron-sulfur cluster binding domain IM40_09210 PF01649 Ribosomal protein S20 IM40_09265 PF03743 Bacterial conjugation TrbI-like protein IM40_09275 PF00437 Type II/IV secretion system protein IM40_09285 PF02534 Type IV secretory system Conjugative DNA transfer IM40_09300 PF01443 Viral (Superfamily 1) RNA helicase IM40_09300 PF03389 MobA/MobL family IM40_09300 PF17841 BID domain of Bartonella effector protein (Bep) IM40_09335 PF04754 Putative transposase, YhgA-like IM40_09340 PF00717 Peptidase S24-like IM40_09345 PF00817 impB/mucB/samB family IM40_09345 PF11799 impB/mucB/samB family C-terminal domain IM40_09345 PF11798 IMS family HHH motif IM40_09345 PF13438 Domain of unknown function (DUF4113) IM40_09365 PF06250 YhcG PDDEXK nuclease domain IM40_09365 PF17761 DUF1016 N-terminal domain IM40_09370 PF13700 Domain of unknown function (DUF4158) IM40_09370 PF01526 Tn3 transposase DDE domain IM40_09375 PF00589 Phage integrase family IM40_09375 PF02899 Phage integrase, N-terminal SAM-like domain IM40_09425 PF01381 Helix-turn-helix IM40_09440 PF01548 Transposase IM40_09440 PF02371 Transposase IS116/IS110/IS902 family IM40_09455 PF01527 Transposase IM40_09520 PF00665 Integrase core domain IM40_09520 PF13333 Integrase core domain IM40_09520 PF13276 HTH-like domain IM40_09570 PF17482 Phage tail sheath C-terminal domain IM40_09570 PF04984 Phage tail sheath protein subtilisin-like domain IM40_09620 PF06250 YhcG PDDEXK nuclease domain IM40_09620 PF17761 DUF1016 N-terminal domain IM40_09640 PF00665 Integrase core domain IM40_09640 PF02796 Helix-turn-helix domain of resolvase IM40_09645 PF01695 IstB-like ATP binding protein IM40_09690 PF13808 DDE_Tnp_1-associated IM40_09690 PF01609 Transposase DDE domain IM40_09695 PF00239 Resolvase, N terminal domain IM40_09695 PF02796 Helix-turn-helix domain of resolvase IM40_09740 PF00239 Resolvase, N terminal domain IM40_09740 PF02796 Helix-turn-helix domain of resolvase IM40_09755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IM40_09765 PF01548 Transposase IM40_09765 PF02371 Transposase IS116/IS110/IS902 family IM40_09835 PF00216 Bacterial DNA-binding protein IM40_09850 PF07015 VirC1 protein IM40_09890 PF03466 LysR substrate binding domain IM40_09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_09950 PF03793 PASTA domain IM40_09950 PF00069 Protein kinase domain IM40_09980 PF00216 Bacterial DNA-binding protein IM40_09990 PF13614 AAA domain IM40_10025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_10025 PF03466 LysR substrate binding domain IM40_10085 PF03743 Bacterial conjugation TrbI-like protein IM40_10095 PF00437 Type II/IV secretion system protein IM40_10140 PF01443 Viral (Superfamily 1) RNA helicase IM40_10140 PF17841 BID domain of Bartonella effector protein (Bep) IM40_10140 PF03389 MobA/MobL family IM40_10170 PF04754 Putative transposase, YhgA-like IM40_10175 PF11798 IMS family HHH motif IM40_10175 PF00817 impB/mucB/samB family IM40_10175 PF11799 impB/mucB/samB family C-terminal domain IM40_10175 PF13438 Domain of unknown function (DUF4113) IM40_10180 PF00717 Peptidase S24-like IM40_10200 PF00196 Bacterial regulatory proteins, luxR family IM40_10200 PF00072 Response regulator receiver domain IM40_10230 PF01527 Transposase IM40_10245 PF02796 Helix-turn-helix domain of resolvase IM40_10245 PF00239 Resolvase, N terminal domain IM40_10285 PF01527 Transposase IM40_10295 PF13610 DDE domain IM40_10305 PF01548 Transposase IM40_10305 PF02371 Transposase IS116/IS110/IS902 family IM40_10310 PF13610 DDE domain IM40_10340 PF03793 PASTA domain IM40_10340 PF00069 Protein kinase domain IM40_10360 PF01548 Transposase IM40_10360 PF02371 Transposase IS116/IS110/IS902 family IM40_10395 PF01381 Helix-turn-helix IM40_10435 PF03477 ATP cone domain IM40_10435 PF00317 Ribonucleotide reductase, all-alpha domain IM40_10435 PF02867 Ribonucleotide reductase, barrel domain IM40_10465 PF13610 DDE domain IM40_10495 PF13610 DDE domain IM40_10585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IM40_10615 PF00216 Bacterial DNA-binding protein IM40_10670 PF00239 Resolvase, N terminal domain IM40_10670 PF02796 Helix-turn-helix domain of resolvase IM40_10685 PF01527 Transposase IM40_10715 PF00072 Response regulator receiver domain IM40_10715 PF00196 Bacterial regulatory proteins, luxR family IM40_10720 PF13610 DDE domain IM40_10730 PF01548 Transposase IM40_10730 PF02371 Transposase IS116/IS110/IS902 family IM40_10755 PF00717 Peptidase S24-like IM40_10760 PF11799 impB/mucB/samB family C-terminal domain IM40_10760 PF13438 Domain of unknown function (DUF4113) IM40_10760 PF00817 impB/mucB/samB family IM40_10765 PF01527 Transposase IM40_10820 PF01695 IstB-like ATP binding protein IM40_10825 PF00665 Integrase core domain IM40_10825 PF02796 Helix-turn-helix domain of resolvase IM40_10845 PF14490 Helix-hairpin-helix containing domain IM40_10845 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain IM40_10845 PF13538 UvrD-like helicase C-terminal domain IM40_10850 PF13610 DDE domain IM40_10855 PF13091 PLD-like domain IM40_10870 PF13657 HipA N-terminal domain IM40_10870 PF07804 HipA-like C-terminal domain IM40_10950 PF01695 IstB-like ATP binding protein IM40_10975 PF00717 Peptidase S24-like IM40_10980 PF01695 IstB-like ATP binding protein IM40_10985 PF02796 Helix-turn-helix domain of resolvase IM40_10985 PF00665 Integrase core domain IM40_10995 PF13610 DDE domain IM40_11010 PF01381 Helix-turn-helix IM40_11070 PF13610 DDE domain IM40_11095 PF04070 Domain of unknown function (DUF378) IM40_11130 PF13737 Transposase DDE domain IM40_11140 PF00512 His Kinase A (phospho-acceptor) domain IM40_11140 PF00360 Phytochrome region IM40_11140 PF08446 PAS fold IM40_11140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_11140 PF01590 GAF domain IM40_11170 PF02371 Transposase IS116/IS110/IS902 family IM40_11170 PF01548 Transposase IM40_11180 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IM40_11195 PF00437 Type II/IV secretion system protein IM40_11205 PF03743 Bacterial conjugation TrbI-like protein IM40_11285 PF00892 EamA-like transporter family IM40_11310 PF13614 AAA domain IM40_11320 PF00216 Bacterial DNA-binding protein IM40_11375 PF01850 PIN domain IM40_11410 PF13737 Transposase DDE domain IM40_11430 PF13610 DDE domain IM40_11440 PF02371 Transposase IS116/IS110/IS902 family IM40_11440 PF01548 Transposase IM40_11450 PF04754 Putative transposase, YhgA-like IM40_11480 PF01443 Viral (Superfamily 1) RNA helicase IM40_11480 PF17841 BID domain of Bartonella effector protein (Bep) IM40_11480 PF03389 MobA/MobL family IM40_11490 PF02534 Type IV secretory system Conjugative DNA transfer