IM40_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain IM40_00010 PF02767 DNA polymerase III beta subunit, central domain IM40_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain IM40_00015 PF02463 RecF/RecN/SMC N terminal domain IM40_00020 PF00204 DNA gyrase B IM40_00020 PF00986 DNA gyrase B subunit, carboxyl terminus IM40_00020 PF01751 Toprim domain IM40_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_00040 PF02666 IM40_00040 IM40_00045 PF01066 CDP-alcohol phosphatidyltransferase IM40_00045 PF08009 IM40_00045 IM40_00050 PF07167 IM40_00050 IM40_00050 PF12551 IM40_00050 IM40_00060 PF00270 DEAD/DEAH box helicase IM40_00060 PF00271 Helicase conserved C-terminal domain IM40_00060 PF17191 IM40_00060 IM40_00065 PF03169 IM40_00065 IM40_00075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IM40_00075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IM40_00075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IM40_00080 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_00080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IM40_00080 PF14602 Hexapeptide repeat of succinyl-transferase IM40_00085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IM40_00090 PF00733 Asparagine synthase IM40_00090 PF13537 Glutamine amidotransferase domain IM40_00095 PF00534 Glycosyl transferases group 1 IM40_00095 PF13439 Glycosyltransferase Family 4 IM40_00105 PF02325 IM40_00105 IM40_00110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IM40_00110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IM40_00135 PF00754 F5/8 type C domain IM40_00135 PF06662 IM40_00135 IM40_00140 PF00733 Asparagine synthase IM40_00140 PF13537 Glutamine amidotransferase domain IM40_00145 PF13439 Glycosyltransferase Family 4 IM40_00145 PF13692 Glycosyl transferases group 1 IM40_00160 PF00005 ABC transporter IM40_00160 PF14524 Wzt C-terminal domain IM40_00175 PF01841 Transglutaminase-like superfamily IM40_00180 PF07690 Major Facilitator Superfamily IM40_00185 PF00529 HlyD family secretion protein IM40_00185 PF16576 IM40_00185 IM40_00200 PF00012 Hsp70 protein IM40_00205 PF00226 DnaJ domain IM40_00205 PF00684 DnaJ central domain IM40_00205 PF01556 DnaJ C terminal domain IM40_00210 PF13609 Gram-negative porin IM40_00220 PF02582 IM40_00220 IM40_00230 PF01545 Cation efflux family IM40_00230 PF16916 IM40_00230 IM40_00240 PF00476 DNA polymerase family A IM40_00240 PF01367 5'-3' exonuclease, C-terminal SAM fold IM40_00240 PF01612 3'-5' exonuclease IM40_00240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IM40_00245 PF00468 Ribosomal protein L34 IM40_00255 PF00437 Type II/IV secretion system protein IM40_00255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IM40_00260 PF00482 Type II secretion system (T2SS), protein F IM40_00270 PF07963 Prokaryotic N-terminal methylation motif IM40_00290 PF01612 3'-5' exonuclease IM40_00295 PF00571 CBS domain IM40_00295 PF01380 SIS domain IM40_00300 PF06835 Lipopolysaccharide-assembly, LptC-related IM40_00305 PF03968 OstA-like protein IM40_00320 PF06965 Na+/H+ antiporter 1 IM40_00325 PF00625 Guanylate kinase IM40_00330 PF07690 Major Facilitator Superfamily IM40_00335 PF13520 Amino acid permease IM40_00345 PF00085 Thioredoxin IM40_00345 PF14559 Tetratricopeptide repeat IM40_00345 PF14561 Tetratricopeptide repeat IM40_00350 PF02190 ATP-dependent protease La (LON) domain IM40_00355 PF03966 Trm112p-like protein IM40_00360 PF03379 IM40_00360 IM40_00365 PF00005 ABC transporter IM40_00370 PF00293 NUDIX domain IM40_00375 PF05175 Methyltransferase small domain IM40_00380 PF00348 Polyprenyl synthetase IM40_00390 PF13516 Leucine Rich repeat IM40_00435 PF02622 Uncharacterized ACR, COG1678 IM40_00445 PF01197 Ribosomal protein L31 IM40_00450 PF01791 DeoC/LacD family aldolase IM40_00465 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IM40_00470 PF00501 AMP-binding enzyme IM40_00470 PF13193 AMP-binding enzyme C-terminal domain IM40_00475 PF00108 Thiolase, N-terminal domain IM40_00475 PF02803 Thiolase, C-terminal domain IM40_00480 PF00378 Enoyl-CoA hydratase/isomerase family IM40_00480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IM40_00480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IM40_00485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IM40_00485 PF02770 Acyl-CoA dehydrogenase, middle domain IM40_00485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IM40_00485 PF12418 IM40_00485 IM40_00485 PF12806 IM40_00485 IM40_00490 PF13279 Thioesterase-like superfamily IM40_00495 PF00106 short chain dehydrogenase IM40_00500 PF00144 Beta-lactamase IM40_00505 PF00204 DNA gyrase B IM40_00505 PF00986 DNA gyrase B subunit, carboxyl terminus IM40_00505 PF01751 Toprim domain IM40_00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_00510 PF04588 Hypoxia induced protein conserved region IM40_00515 PF01923 Cobalamin adenosyltransferase IM40_00520 PF03232 IM40_00520 IM40_00530 PF09335 IM40_00530 IM40_00560 PF01725 Ham1 family IM40_00565 PF04055 Radical SAM superfamily IM40_00565 PF06969 HemN C-terminal domain IM40_00570 PF04002 RadC-like JAB domain IM40_00575 PF00563 EAL domain IM40_00575 PF00990 GGDEF domain IM40_00585 PF00115 Cytochrome C and Quinol oxidase polypeptide I IM40_00590 PF01040 UbiA prenyltransferase family IM40_00600 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IM40_00610 PF03030 Inorganic H+ pyrophosphatase IM40_00630 PF00011 Hsp20/alpha crystallin family IM40_00650 PF14534 Domain of unknown function (DUF4440) IM40_00655 PF01578 IM40_00655 IM40_00665 PF03100 CcmE IM40_00675 PF00430 ATP synthase B/B' CF(0) IM40_00680 PF00430 ATP synthase B/B' CF(0) IM40_00685 PF00137 ATP synthase subunit C IM40_00690 PF00119 ATP synthase A chain IM40_00695 PF02637 GatB domain IM40_00695 PF02934 GatB/GatE catalytic domain IM40_00700 PF01425 Amidase IM40_00705 PF02686 Glu-tRNAGln amidotransferase C subunit IM40_00710 PF01209 ubiE/COQ5 methyltransferase family IM40_00715 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IM40_00715 PF06827 Zinc finger found in FPG and IleRS IM40_00715 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IM40_00725 PF09537 Domain of unknown function (DUF2383) IM40_00730 PF00477 IM40_00730 IM40_00735 PF00892 EamA-like transporter family IM40_00755 PF04314 Protein of unknown function (DUF461) IM40_00765 PF00140 Sigma-70 factor, region 1 IM40_00765 PF03979 Sigma-70 factor, region 1 IM40_00765 PF04539 Sigma-70 region 3 IM40_00765 PF04542 Sigma-70 region 2 IM40_00765 PF04545 Sigma-70, region 4 IM40_00765 PF04546 Sigma-70, non-essential region IM40_00775 PF05958 tRNA (Uracil-5-)-methyltransferase IM40_00780 PF10073 IM40_00780 IM40_00795 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) IM40_00800 PF00581 Rhodanese-like domain IM40_00805 PF02321 Outer membrane efflux protein IM40_00815 PF01047 MarR family IM40_00825 PF00990 GGDEF domain IM40_00825 PF12860 IM40_00825 IM40_00840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IM40_00840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IM40_00855 PF01513 ATP-NAD kinase IM40_00860 PF01297 Periplasmic solute binding protein family IM40_00870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IM40_00900 PF07690 Major Facilitator Superfamily IM40_00905 PF10276 Zinc-finger domain IM40_00915 PF01728 FtsJ-like methyltransferase IM40_00920 PF01189 NOL1/NOP2/sun family IM40_00925 PF01119 DNA mismatch repair protein, C-terminal domain IM40_00925 PF08676 MutL C terminal dimerisation domain IM40_00925 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_00930 PF00342 Phosphoglucose isomerase IM40_00935 PF00675 Insulinase (Peptidase family M16) IM40_00935 PF05193 Peptidase M16 inactive domain IM40_00945 PF11233 IM40_00945 IM40_00955 PF00133 tRNA synthetases class I (I, L, M and V) IM40_00955 PF06827 Zinc finger found in FPG and IleRS IM40_00955 PF08264 Anticodon-binding domain of tRNA IM40_00960 PF01272 Transcription elongation factor, GreA/GreB, C-term IM40_00960 PF03449 Transcription elongation factor, N-terminal IM40_00965 PF06258 IM40_00965 IM40_00975 PF00572 Ribosomal protein L13 IM40_00980 PF00380 Ribosomal protein S9/S16 IM40_00985 PF13489 Methyltransferase domain IM40_01010 PF01546 Peptidase family M20/M25/M40 IM40_01010 PF07687 Peptidase dimerisation domain IM40_01015 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_01015 PF14602 Hexapeptide repeat of succinyl-transferase IM40_01015 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IM40_01020 PF02643 Uncharacterized ACR, COG1430 IM40_01025 PF03054 tRNA methyl transferase IM40_01030 PF09243 IM40_01030 IM40_01055 PF13610 IM40_01055 IM40_01095 PF01218 Coproporphyrinogen III oxidase IM40_01100 PF00588 SpoU rRNA Methylase family IM40_01110 PF01773 Na+ dependent nucleoside transporter N-terminus IM40_01110 PF07662 Na+ dependent nucleoside transporter C-terminus IM40_01120 PF00034 Cytochrome c IM40_01125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IM40_01130 PF00528 Binding-protein-dependent transport system inner membrane component IM40_01135 PF00528 Binding-protein-dependent transport system inner membrane component IM40_01135 PF12911 IM40_01135 IM40_01140 PF00005 ABC transporter IM40_01140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IM40_01145 PF00698 Acyl transferase domain IM40_01150 PF13561 Enoyl-(Acyl carrier protein) reductase IM40_01155 PF00550 Phosphopantetheine attachment site IM40_01160 PF00109 Beta-ketoacyl synthase, N-terminal domain IM40_01160 PF02801 Beta-ketoacyl synthase, C-terminal domain IM40_01165 PF02618 YceG-like family IM40_01180 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) IM40_01185 PF14359 Domain of unknown function (DUF4406) IM40_01200 PF00581 Rhodanese-like domain IM40_01205 PF04384 Iron-sulphur cluster assembly IM40_01210 PF00111 2Fe-2S iron-sulfur cluster binding domain IM40_01215 PF00875 DNA photolyase IM40_01215 PF03441 FAD binding domain of DNA photolyase IM40_01225 PF00308 Bacterial dnaA protein IM40_01235 PF01066 CDP-alcohol phosphatidyltransferase IM40_01240 PF09839 IM40_01240 IM40_01245 PF00334 Nucleoside diphosphate kinase IM40_01250 PF04364 DNA polymerase III chi subunit, HolC IM40_01255 PF00883 Cytosol aminopeptidase family, catalytic domain IM40_01255 PF02789 Cytosol aminopeptidase family, N-terminal domain IM40_01260 PF00471 Ribosomal protein L33 IM40_01270 PF00497 Bacterial extracellular solute-binding proteins, family 3 IM40_01270 PF03458 IM40_01270 IM40_01290 PF00005 ABC transporter IM40_01290 PF00664 ABC transporter transmembrane region IM40_01305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IM40_01305 PF16321 IM40_01305 IM40_01310 PF00854 POT family IM40_01320 PF00005 ABC transporter IM40_01320 PF12848 ABC transporter IM40_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_01335 PF03466 LysR substrate binding domain IM40_01350 PF03099 Biotin/lipoate A/B protein ligase family IM40_01355 PF00154 recA bacterial DNA recombination protein IM40_01360 PF03795 YCII-related domain IM40_01370 PF01411 tRNA synthetases class II (A) IM40_01370 PF02272 DHHA1 domain IM40_01370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IM40_01380 PF00484 Carbonic anhydrase IM40_01390 PF00717 Peptidase S24-like IM40_01395 PF01809 IM40_01395 IM40_01400 PF02096 60Kd inner membrane protein IM40_01400 PF14849 YidC periplasmic domain IM40_01405 PF01926 50S ribosome-binding GTPase IM40_01435 PF13419 Haloacid dehalogenase-like hydrolase IM40_01455 PF03548 Outer membrane lipoprotein carrier protein LolA IM40_01460 PF01580 FtsK/SpoIIIE family IM40_01460 PF09397 Ftsk gamma domain IM40_01460 PF13491 IM40_01460 IM40_01475 PF16363 IM40_01475 IM40_01480 PF07690 Major Facilitator Superfamily IM40_01485 PF07690 Major Facilitator Superfamily IM40_01495 PF00166 Chaperonin 10 Kd subunit IM40_01500 PF00118 TCP-1/cpn60 chaperonin family IM40_01530 PF00520 Ion transport protein IM40_01550 PF02678 Pirin IM40_01560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IM40_01560 PF02805 Metal binding domain of Ada IM40_01560 PF12833 Helix-turn-helix domain IM40_01620 PF06347 Bacterial SH3 domain IM40_01625 PF00692 dUTPase IM40_01675 PF01548 IM40_01675 IM40_01675 PF02371 IM40_01675 IM40_01695 PF13416 Bacterial extracellular solute-binding protein IM40_01700 PF06996 IM40_01700 IM40_01705 PF05947 IM40_01705 IM40_01710 PF01738 Dienelactone hydrolase family IM40_01715 PF01416 tRNA pseudouridine synthase IM40_01720 PF00551 Formyl transferase IM40_01720 PF02911 Formyl transferase, C-terminal domain IM40_01725 PF01327 Polypeptide deformylase IM40_01740 PF00717 Peptidase S24-like IM40_01745 PF00035 Double-stranded RNA binding motif IM40_01745 PF14622 Ribonuclease-III-like IM40_01750 PF01926 50S ribosome-binding GTPase IM40_01750 PF07650 KH domain IM40_01755 PF00112 Papain family cysteine protease IM40_01780 PF01810 IM40_01780 IM40_01785 PF01176 Translation initiation factor 1A / IF-1 IM40_01795 PF10150 Ribonuclease E/G family IM40_01800 PF03884 Domain of unknown function (DUF329) IM40_01805 PF13561 Enoyl-(Acyl carrier protein) reductase IM40_01810 PF01343 Peptidase family S49 IM40_01815 PF00180 Isocitrate/isopropylmalate dehydrogenase IM40_01840 PF01052 Surface presentation of antigens (SPOA) IM40_01845 PF00448 SRP54-type protein, GTPase domain IM40_01850 PF13614 AAA domain IM40_01855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IM40_01855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IM40_01855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IM40_01855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IM40_01860 PF00881 Nitroreductase family IM40_01880 PF16113 IM40_01880 IM40_01885 PF00270 DEAD/DEAH box helicase IM40_01885 PF00271 Helicase conserved C-terminal domain IM40_01885 PF02559 CarD-like/TRCF domain IM40_01885 PF03461 TRCF domain IM40_01890 PF03992 Antibiotic biosynthesis monooxygenase IM40_01895 PF00892 EamA-like transporter family IM40_01945 PF05170 IM40_01945 IM40_01955 PF16980 IM40_01955 IM40_01960 PF02405 IM40_01960 IM40_01965 PF00005 ABC transporter IM40_01975 PF03886 Protein of unknown function (DUF330) IM40_01980 PF01027 Inhibitor of apoptosis-promoting Bax1 IM40_01995 PF00164 Ribosomal protein S12/S23 IM40_02000 PF00177 Ribosomal protein S7p/S5e IM40_02005 PF00009 Elongation factor Tu GTP binding domain IM40_02005 PF00679 Elongation factor G C-terminus IM40_02005 PF03144 Elongation factor Tu domain 2 IM40_02005 PF03764 Elongation factor G, domain IV IM40_02005 PF14492 Elongation Factor G, domain II IM40_02010 PF00009 Elongation factor Tu GTP binding domain IM40_02010 PF03143 Elongation factor Tu C-terminal domain IM40_02010 PF03144 Elongation factor Tu domain 2 IM40_02015 PF00338 Ribosomal protein S10p/S20e IM40_02020 PF00297 Ribosomal protein L3 IM40_02025 PF00573 Ribosomal protein L4/L1 family IM40_02030 PF00276 Ribosomal protein L23 IM40_02035 PF00181 Ribosomal Proteins L2, RNA binding domain IM40_02035 PF03947 Ribosomal Proteins L2, C-terminal domain IM40_02040 PF00203 Ribosomal protein S19 IM40_02045 PF00237 Ribosomal protein L22p/L17e IM40_02050 PF00189 Ribosomal protein S3, C-terminal domain IM40_02050 PF07650 KH domain IM40_02055 PF00252 Ribosomal protein L16p/L10e IM40_02060 PF00831 Ribosomal L29 protein IM40_02065 PF00366 Ribosomal protein S17 IM40_02070 PF00238 Ribosomal protein L14p/L23e IM40_02075 PF00467 KOW motif IM40_02075 PF17136 IM40_02075 IM40_02080 PF00281 Ribosomal protein L5 IM40_02080 PF00673 ribosomal L5P family C-terminus IM40_02085 PF00253 Ribosomal protein S14p/S29e IM40_02090 PF00410 Ribosomal protein S8 IM40_02095 PF00347 Ribosomal protein L6 IM40_02100 PF00861 Ribosomal L18p/L5e family IM40_02105 PF00333 Ribosomal protein S5, N-terminal domain IM40_02105 PF03719 Ribosomal protein S5, C-terminal domain IM40_02110 PF00327 Ribosomal protein L30p/L7e IM40_02115 PF00828 Ribosomal protein L18e/L15 IM40_02120 PF00344 SecY translocase IM40_02125 PF00406 Adenylate kinase IM40_02125 PF05191 Adenylate kinase, active site lid IM40_02130 PF00416 Ribosomal protein S13/S18 IM40_02135 PF00411 Ribosomal protein S11 IM40_02140 PF01000 RNA polymerase Rpb3/RpoA insert domain IM40_02140 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IM40_02140 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IM40_02145 PF01196 Ribosomal protein L17 IM40_02150 PF13180 PDZ domain IM40_02150 PF13365 Trypsin-like peptidase domain IM40_02155 PF00004 ATPase family associated with various cellular activities (AAA) IM40_02155 PF12002 MgsA AAA+ ATPase C terminal IM40_02155 PF16193 IM40_02155 IM40_02165 PF02661 Fic/DOC family IM40_02170 PF03070 TENA/THI-4/PQQC family IM40_02180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_02180 PF03466 LysR substrate binding domain IM40_02190 PF06412 IM40_02190 IM40_02205 PF03389 MobA/MobL family IM40_02205 PF13604 AAA domain IM40_02245 PF07916 IM40_02245 IM40_02250 PF06122 IM40_02250 IM40_02255 PF13728 F plasmid transfer operon protein IM40_02260 PF01402 Ribbon-helix-helix protein, copG family IM40_02265 PF05016 Plasmid stabilisation system protein IM40_02270 PF06986 IM40_02270 IM40_02275 PF09673 IM40_02275 IM40_02280 PF06834 IM40_02280 IM40_02310 PF11130 IM40_02310 IM40_02310 PF12846 AAA-like domain IM40_02325 PF06586 IM40_02325 IM40_02330 PF05309 IM40_02330 IM40_02335 PF07178 IM40_02335 IM40_02365 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system IM40_02370 PF05016 Plasmid stabilisation system protein IM40_02375 PF12796 Ankyrin repeats (3 copies) IM40_02385 PF13483 Beta-lactamase superfamily domain IM40_02390 PF13847 Methyltransferase domain IM40_02400 PF13621 Cupin-like domain IM40_02405 PF00675 Insulinase (Peptidase family M16) IM40_02405 PF05193 Peptidase M16 inactive domain IM40_02410 PF00501 AMP-binding enzyme IM40_02410 PF00550 Phosphopantetheine attachment site IM40_02410 PF00668 Condensation domain IM40_02410 PF13193 AMP-binding enzyme C-terminal domain IM40_02415 PF00501 AMP-binding enzyme IM40_02415 PF00668 Condensation domain IM40_02415 PF13193 AMP-binding enzyme C-terminal domain IM40_02420 PF00501 AMP-binding enzyme IM40_02420 PF00550 Phosphopantetheine attachment site IM40_02420 PF00668 Condensation domain IM40_02420 PF13193 AMP-binding enzyme C-terminal domain IM40_02445 PF01648 4'-phosphopantetheinyl transferase superfamily IM40_02450 PF01329 Pterin 4 alpha carbinolamine dehydratase IM40_02455 PF02592 IM40_02455 IM40_02460 PF11019 IM40_02460 IM40_02480 PF01548 IM40_02480 IM40_02480 PF02371 IM40_02480 IM40_02485 PF01527 Transposase IM40_02500 PF01527 Transposase IM40_02505 PF00501 AMP-binding enzyme IM40_02505 PF00550 Phosphopantetheine attachment site IM40_02505 PF00668 Condensation domain IM40_02505 PF13193 AMP-binding enzyme C-terminal domain IM40_02510 PF01636 Phosphotransferase enzyme family IM40_02515 PF00717 Peptidase S24-like IM40_02520 PF00589 Phage integrase family IM40_02520 PF13356 Domain of unknown function (DUF4102) IM40_02520 PF14659 Phage integrase, N-terminal SAM-like domain IM40_02530 PF13302 Acetyltransferase (GNAT) domain IM40_02555 PF03070 TENA/THI-4/PQQC family IM40_02580 PF00854 POT family IM40_02585 PF00750 tRNA synthetases class I (R) IM40_02605 PF01764 Lipase (class 3) IM40_02610 PF01527 Transposase IM40_02615 PF01548 IM40_02615 IM40_02615 PF02371 IM40_02615 IM40_02635 PF00196 Bacterial regulatory proteins, luxR family IM40_02635 PF00931 NB-ARC domain IM40_02640 PF13424 Tetratricopeptide repeat IM40_02655 PF13612 IM40_02655 IM40_02675 PF10025 Uncharacterized conserved protein (DUF2267) IM40_02680 PF02353 Mycolic acid cyclopropane synthetase IM40_02690 PF01609 Transposase DDE domain IM40_02690 PF05598 IM40_02690 IM40_02805 PF02381 MraZ protein IM40_02810 PF01795 MraW methylase family IM40_02825 PF02875 Mur ligase family, glutamate ligase domain IM40_02825 PF08245 Mur ligase middle domain IM40_02830 PF01225 Mur ligase family, catalytic domain IM40_02830 PF02875 Mur ligase family, glutamate ligase domain IM40_02830 PF08245 Mur ligase middle domain IM40_02835 PF00953 Glycosyl transferase family 4 IM40_02840 PF02875 Mur ligase family, glutamate ligase domain IM40_02840 PF08245 Mur ligase middle domain IM40_02845 PF01098 IM40_02845 IM40_02850 PF03033 Glycosyltransferase family 28 N-terminal domain IM40_02850 PF04101 Glycosyltransferase family 28 C-terminal domain IM40_02855 PF01225 Mur ligase family, catalytic domain IM40_02855 PF02875 Mur ligase family, glutamate ligase domain IM40_02855 PF08245 Mur ligase middle domain IM40_02860 PF01565 FAD binding domain IM40_02860 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IM40_02865 PF01820 D-ala D-ala ligase N-terminus IM40_02865 PF07478 D-ala D-ala ligase C-terminus IM40_02870 PF03799 Cell division protein FtsQ IM40_02870 PF08478 POTRA domain, FtsQ-type IM40_02875 PF02491 SHS2 domain inserted in FTSA IM40_02875 PF14450 Cell division protein FtsA IM40_02880 PF00091 Tubulin/FtsZ family, GTPase domain IM40_02880 PF12327 FtsZ family, C-terminal domain IM40_02885 PF13302 Acetyltransferase (GNAT) domain IM40_02900 PF00490 Delta-aminolevulinic acid dehydratase IM40_02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_02915 PF03466 LysR substrate binding domain IM40_02920 PF03219 IM40_02920 IM40_02925 PF00263 IM40_02925 IM40_02930 PF01467 Cytidylyltransferase IM40_02940 PF00521 DNA gyrase/topoisomerase IV, subunit A IM40_02940 PF03989 DNA gyrase C-terminal domain, beta-propeller IM40_02945 PF00436 Single-strand binding protein family IM40_02955 PF00216 Bacterial DNA-binding protein IM40_02970 PF04860 Phage portal protein IM40_02975 PF04586 IM40_02975 IM40_02980 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system IM40_02985 PF01850 PIN domain IM40_03000 PF09835 IM40_03000 IM40_03010 PF03352 Methyladenine glycosylase IM40_03015 PF00206 Lyase IM40_03015 PF10415 Fumarase C C-terminus IM40_03020 PF12937 F-box-like IM40_03025 PF14437 IM40_03025 IM40_03030 PF00005 ABC transporter IM40_03035 PF02687 IM40_03035 IM40_03035 PF12704 MacB-like periplasmic core domain IM40_03040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IM40_03040 PF03129 Anticodon binding domain IM40_03050 PF03237 Terminase-like family IM40_03050 PF17289 IM40_03050 IM40_03055 PF04379 Protein of unknown function (DUF525) IM40_03060 PF03061 Thioesterase superfamily IM40_03065 PF01618 IM40_03065 IM40_03095 PF04052 TolB amino-terminal domain IM40_03095 PF07676 WD40-like Beta Propeller Repeat IM40_03100 PF00691 OmpA family IM40_03105 PF00707 Translation initiation factor IF-3, C-terminal domain IM40_03105 PF05198 Translation initiation factor IF-3, N-terminal domain IM40_03110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IM40_03110 PF02824 TGS domain IM40_03110 PF03129 Anticodon binding domain IM40_03110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IM40_03120 PF04392 ABC transporter substrate binding protein IM40_03130 PF00121 Triosephosphate isomerase IM40_03145 PF00117 Glutamine amidotransferase class-I IM40_03145 PF06418 CTP synthase N-terminus IM40_03150 PF00793 DAHP synthetase I family IM40_03180 PF00501 AMP-binding enzyme IM40_03180 PF13193 AMP-binding enzyme C-terminal domain IM40_03180 PF16177 IM40_03180 IM40_03185 PF01250 Ribosomal protein S6 IM40_03190 PF01084 Ribosomal protein S18 IM40_03195 PF09991 IM40_03195 IM40_03210 PF00772 DnaB-like helicase N terminal domain IM40_03210 PF03796 DnaB-like helicase C terminal domain IM40_03225 PF00753 Metallo-beta-lactamase superfamily IM40_03235 PF00477 IM40_03235 IM40_03240 PF11164 IM40_03240 IM40_03250 PF00692 dUTPase IM40_03270 PF05088 IM40_03270 IM40_03275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IM40_03275 PF14572 Phosphoribosyl synthetase-associated domain IM40_03290 PF02602 Uroporphyrinogen-III synthase HemD IM40_03295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IM40_03300 PF13463 Winged helix DNA-binding domain IM40_03305 PF03553 IM40_03305 IM40_03315 PF07330 IM40_03315 IM40_03320 PF03477 ATP cone domain IM40_03325 PF00464 Serine hydroxymethyltransferase IM40_03330 PF04386 Stringent starvation protein B IM40_03335 PF02632 BioY family IM40_03340 PF06935 IM40_03340 IM40_03345 PF00293 NUDIX domain IM40_03350 PF00829 Ribosomal prokaryotic L21 protein IM40_03355 PF01016 Ribosomal L27 protein IM40_03365 PF02410 Oligomerisation domain IM40_03390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IM40_03390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IM40_03395 PF00293 NUDIX domain IM40_03400 PF03572 Peptidase family S41 IM40_03400 PF13180 PDZ domain IM40_03405 PF01676 Metalloenzyme superfamily IM40_03405 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IM40_03410 PF01029 NusB family IM40_03415 PF00210 Ferritin-like domain IM40_03425 PF00578 AhpC/TSA family IM40_03430 PF03060 Nitronate monooxygenase IM40_03435 PF00013 KH domain IM40_03435 PF00575 S1 RNA binding domain IM40_03435 PF01138 3' exoribonuclease family, domain 1 IM40_03435 PF03725 3' exoribonuclease family, domain 2 IM40_03435 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IM40_03440 PF00312 Ribosomal protein S15 IM40_03445 PF01509 TruB family pseudouridylate synthase (N terminal domain) IM40_03455 PF07811 IM40_03455 IM40_03465 PF13400 IM40_03465 IM40_03470 PF13432 Tetratricopeptide repeat IM40_03480 PF16976 IM40_03480 IM40_03490 PF09476 IM40_03490 IM40_03495 PF00072 Response regulator receiver domain IM40_03495 PF13614 AAA domain IM40_03505 PF00482 Type II secretion system (T2SS), protein F IM40_03515 PF05258 IM40_03515 IM40_03525 PF00580 UvrD/REP helicase N-terminal domain IM40_03525 PF13361 UvrD-like helicase C-terminal domain IM40_03540 PF07690 Major Facilitator Superfamily IM40_03550 PF14328 IM40_03550 IM40_03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_03585 PF13426 PAS domain IM40_03590 PF11181 IM40_03590 IM40_03605 PF01066 CDP-alcohol phosphatidyltransferase IM40_03610 PF01541 GIY-YIG catalytic domain IM40_03610 PF02151 UvrB/uvrC motif IM40_03610 PF08459 UvrC Helix-hairpin-helix N-terminal IM40_03610 PF12826 Helix-hairpin-helix motif IM40_03625 PF00849 RNA pseudouridylate synthase IM40_03625 PF01479 S4 domain IM40_03630 PF04542 Sigma-70 region 2 IM40_03630 PF04545 Sigma-70, region 4 IM40_03635 PF02811 PHP domain IM40_03635 PF07733 Bacterial DNA polymerase III alpha subunit IM40_03635 PF14579 Helix-hairpin-helix motif IM40_03640 PF01510 N-acetylmuramoyl-L-alanine amidase IM40_03645 PF10090 Uncharacterized protein conserved in bacteria (DUF2328) IM40_03650 PF03167 Uracil DNA glycosylase superfamily IM40_03655 PF01040 UbiA prenyltransferase family IM40_03670 PF00533 BRCA1 C Terminus (BRCT) domain IM40_03670 PF01653 NAD-dependent DNA ligase adenylation domain IM40_03670 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IM40_03670 PF03120 NAD-dependent DNA ligase OB-fold domain IM40_03670 PF12826 Helix-hairpin-helix motif IM40_03675 PF02463 RecF/RecN/SMC N terminal domain IM40_03680 PF13525 Outer membrane lipoprotein IM40_03685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IM40_03700 PF00076 RNA recognition motif IM40_03710 PF05257 CHAP domain IM40_03725 PF10116 IM40_03725 IM40_03740 PF04070 IM40_03740 IM40_03750 PF10685 IM40_03750 IM40_03775 PF00216 Bacterial DNA-binding protein IM40_03855 PF05016 Plasmid stabilisation system protein IM40_03870 PF03797 Autotransporter beta-domain IM40_03870 PF12951 IM40_03870 IM40_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_03875 PF03466 LysR substrate binding domain IM40_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_03890 PF03466 LysR substrate binding domain IM40_03900 PF03466 LysR substrate binding domain IM40_03910 PF00069 Protein kinase domain IM40_03920 PF00561 alpha/beta hydrolase fold IM40_03925 PF01427 D-ala-D-ala dipeptidase IM40_03950 PF01757 IM40_03950 IM40_03955 PF01757 IM40_03955 IM40_03960 PF12706 Beta-lactamase superfamily domain IM40_03990 PF04830 IM40_03990 IM40_04025 PF13505 Outer membrane protein beta-barrel domain IM40_04030 PF00749 tRNA synthetases class I (E and Q), catalytic domain IM40_04035 PF01406 tRNA synthetases class I (C) catalytic domain IM40_04035 PF09190 DALR domain IM40_04045 PF01202 Shikimate kinase IM40_04055 PF00589 Phage integrase family IM40_04055 PF02899 Phage integrase, N-terminal SAM-like domain IM40_04060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IM40_04070 PF00375 Sodium:dicarboxylate symporter family IM40_04075 PF00483 Nucleotidyl transferase IM40_04080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IM40_04080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IM40_04080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IM40_04100 PF01300 Telomere recombination IM40_04100 PF03481 Putative GTP-binding controlling metal-binding IM40_04110 PF01678 Diaminopimelate epimerase IM40_04115 PF00919 Uncharacterized protein family UPF0004 IM40_04115 PF04055 Radical SAM superfamily IM40_04120 PF00448 SRP54-type protein, GTPase domain IM40_04120 PF02881 SRP54-type protein, helical bundle domain IM40_04125 PF01258 Prokaryotic dksA/traR C4-type zinc finger IM40_04130 PF02511 Thymidylate synthase complementing protein IM40_04150 PF00582 Universal stress protein family IM40_04165 PF00266 Aminotransferase class-V IM40_04180 PF02575 YbaB/EbfC DNA-binding family IM40_04185 PF02132 RecR protein IM40_04185 PF13662 Toprim domain IM40_04190 PF00216 Bacterial DNA-binding protein IM40_04195 PF00265 Thymidine kinase IM40_04200 PF13847 Methyltransferase domain IM40_04210 PF04452 RNA methyltransferase IM40_04215 PF00924 Mechanosensitive ion channel IM40_04220 PF02386 Cation transport protein IM40_04235 PF01636 Phosphotransferase enzyme family IM40_04250 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IM40_04250 PF08388 IM40_04250 IM40_04265 PF00924 Mechanosensitive ion channel IM40_04275 PF01165 Ribosomal protein S21 IM40_04280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IM40_04280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IM40_04285 PF00456 Transketolase, thiamine diphosphate binding domain IM40_04285 PF02779 Transketolase, pyrimidine binding domain IM40_04285 PF02780 Transketolase, C-terminal domain IM40_04290 PF00633 Helix-hairpin-helix motif IM40_04290 PF00730 HhH-GPD superfamily base excision DNA repair protein IM40_04290 PF14815 NUDIX domain IM40_04300 PF01039 Carboxyl transferase domain IM40_04305 PF01052 Surface presentation of antigens (SPOA) IM40_04305 PF02154 Flagellar motor switch protein FliM IM40_04315 PF01957 NfeD-like C-terminal, partner-binding IM40_04320 PF01145 SPFH domain / Band 7 family IM40_04325 PF01471 Putative peptidoglycan binding domain IM40_04325 PF03734 L,D-transpeptidase catalytic domain IM40_04335 PF01177 Asp/Glu/Hydantoin racemase IM40_04345 PF00211 Adenylate and Guanylate cyclase catalytic domain IM40_04345 PF02743 Cache domain IM40_04350 PF00375 Sodium:dicarboxylate symporter family IM40_04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_04355 PF03466 LysR substrate binding domain IM40_04360 PF09140 ATPase MipZ IM40_04365 PF00528 Binding-protein-dependent transport system inner membrane component IM40_04370 PF00528 Binding-protein-dependent transport system inner membrane component IM40_04375 PF00005 ABC transporter IM40_04375 PF08402 TOBE domain IM40_04380 PF07690 Major Facilitator Superfamily IM40_04385 PF00005 ABC transporter IM40_04385 PF00664 ABC transporter transmembrane region IM40_04390 PF02867 Ribonucleotide reductase, barrel domain IM40_04390 PF08471 IM40_04390 IM40_04405 PF02348 Cytidylyltransferase IM40_04410 PF03652 Uncharacterised protein family (UPF0081) IM40_04415 PF02594 Uncharacterised ACR, YggU family COG1872 IM40_04430 PF00950 IM40_04430 IM40_04435 PF00005 ABC transporter IM40_04440 PF00953 Glycosyl transferase family 4 IM40_04450 PF09538 IM40_04450 IM40_04455 PF02224 Cytidylate kinase IM40_04470 PF00472 RF-1 domain IM40_04470 PF03462 PCRF domain IM40_04525 PF01255 Putative undecaprenyl diphosphate synthase IM40_04530 PF01765 Ribosome recycling factor IM40_04540 PF00889 Elongation factor TS IM40_04545 PF00318 Ribosomal protein S2 IM40_04555 PF00497 Bacterial extracellular solute-binding proteins, family 3 IM40_04555 PF03458 IM40_04555 IM40_04565 PF01435 Peptidase family M48 IM40_04565 PF13432 Tetratricopeptide repeat IM40_04570 PF13462 Thioredoxin IM40_04575 PF01048 Phosphorylase superfamily IM40_04575 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus IM40_04580 PF12146 Putative lysophospholipase IM40_04585 PF00005 ABC transporter IM40_04590 PF02653 IM40_04590 IM40_04600 PF04392 ABC transporter substrate binding protein IM40_04605 PF00570 HRDC domain IM40_04605 PF01612 3'-5' exonuclease IM40_04610 PF00152 tRNA synthetases class II (D, K and N) IM40_04610 PF01336 OB-fold nucleic acid binding domain IM40_04610 PF02938 GAD domain IM40_04615 PF05175 Methyltransferase small domain IM40_04620 PF00472 RF-1 domain IM40_04620 PF03462 PCRF domain IM40_04625 PF03129 Anticodon binding domain IM40_04625 PF13393 Histidyl-tRNA synthetase IM40_04630 PF13413 Helix-turn-helix domain IM40_04630 PF13464 IM40_04630 IM40_04635 PF03060 Nitronate monooxygenase IM40_04645 PF02405 IM40_04645 IM40_04650 PF00005 ABC transporter IM40_04655 PF13481 AAA domain IM40_04655 PF13541 Subunit ChlI of Mg-chelatase IM40_04660 PF02674 IM40_04660 IM40_04690 PF02233 NAD(P) transhydrogenase beta subunit IM40_04695 PF12769 Domain of unknown function (DUF3814) IM40_04700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IM40_04700 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IM40_04705 PF13145 PPIC-type PPIASE domain IM40_04705 PF13624 SurA N-terminal domain IM40_04730 PF04800 ETC complex I subunit conserved region IM40_04735 PF00326 Prolyl oligopeptidase family IM40_04745 PF07690 Major Facilitator Superfamily IM40_04755 PF00005 ABC transporter IM40_04755 PF00664 ABC transporter transmembrane region IM40_04770 PF00733 Asparagine synthase IM40_04770 PF13537 Glutamine amidotransferase domain IM40_04775 PF02390 Putative methyltransferase IM40_04785 PF00571 CBS domain IM40_04785 PF03471 Transporter associated domain IM40_04790 PF02130 Uncharacterized protein family UPF0054 IM40_04795 PF02562 PhoH-like protein IM40_04800 PF00919 Uncharacterized protein family UPF0004 IM40_04800 PF01938 TRAM domain IM40_04800 PF04055 Radical SAM superfamily IM40_04805 PF05443 ROS/MUCR transcriptional regulator protein IM40_04810 PF00583 Acetyltransferase (GNAT) family IM40_04815 PF00814 Glycoprotease family IM40_04820 PF13410 Glutathione S-transferase, C-terminal domain IM40_04820 PF13417 Glutathione S-transferase, N-terminal domain IM40_04830 PF04402 Protein of unknown function (DUF541) IM40_04840 PF13360 PQQ-like domain IM40_04845 PF01926 50S ribosome-binding GTPase IM40_04845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IM40_04850 PF00106 short chain dehydrogenase IM40_04855 PF03602 Conserved hypothetical protein 95 IM40_04890 PF01702 Queuine tRNA-ribosyltransferase IM40_04900 PF00830 Ribosomal L28 family IM40_04905 PF01380 SIS domain IM40_04905 PF13522 Glutamine amidotransferase domain IM40_04910 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_04910 PF12804 MobA-like NTP transferase domain IM40_04915 PF05951 IM40_04915 IM40_04925 PF00497 Bacterial extracellular solute-binding proteins, family 3 IM40_04935 PF17209 IM40_04935 IM40_04945 PF06242 IM40_04945 IM40_04950 PF00365 Phosphofructokinase IM40_04955 PF04325 Protein of unknown function (DUF465) IM40_04965 PF01734 Patatin-like phospholipase IM40_04970 PF01632 Ribosomal protein L35 IM40_04975 PF00453 Ribosomal protein L20 IM40_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_04980 PF03466 LysR substrate binding domain IM40_04990 PF01409 tRNA synthetases class II core domain (F) IM40_04990 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IM40_04995 PF01588 Putative tRNA binding domain IM40_04995 PF03147 Ferredoxin-fold anticodon binding domain IM40_04995 PF03483 B3/4 domain IM40_04995 PF03484 tRNA synthetase B5 domain IM40_05000 PF00009 Elongation factor Tu GTP binding domain IM40_05000 PF00679 Elongation factor G C-terminus IM40_05000 PF03144 Elongation factor Tu domain 2 IM40_05000 PF06421 GTP-binding protein LepA C-terminus IM40_05010 PF00583 Acetyltransferase (GNAT) family IM40_05015 PF09361 IM40_05015 IM40_05035 PF00440 Bacterial regulatory proteins, tetR family IM40_05040 PF10722 Putative bacterial sensory transduction regulator IM40_05050 PF01370 NAD dependent epimerase/dehydratase family IM40_05055 PF01790 IM40_05055 IM40_05060 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase IM40_05065 PF02578 Multi-copper polyphenol oxidoreductase laccase IM40_05075 PF00213 ATP synthase delta (OSCP) subunit IM40_05080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IM40_05080 PF00306 ATP synthase alpha/beta chain, C terminal domain IM40_05080 PF02874 ATP synthase alpha/beta family, beta-barrel domain IM40_05085 PF00231 ATP synthase IM40_05090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IM40_05090 PF02874 ATP synthase alpha/beta family, beta-barrel domain IM40_05095 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IM40_05105 PF00892 EamA-like transporter family IM40_05110 PF13561 Enoyl-(Acyl carrier protein) reductase IM40_05115 PF00085 Thioredoxin IM40_05125 PF00512 His Kinase A (phospho-acceptor) domain IM40_05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_05125 PF02743 Cache domain IM40_05130 PF00557 Metallopeptidase family M24 IM40_05130 PF01321 Creatinase/Prolidase N-terminal domain IM40_05130 PF16188 IM40_05130 IM40_05130 PF16189 IM40_05130 IM40_05135 PF00881 Nitroreductase family IM40_05155 PF00113 Enolase, C-terminal TIM barrel domain IM40_05155 PF03952 Enolase, N-terminal domain IM40_05170 PF13443 Cro/C1-type HTH DNA-binding domain IM40_05175 PF11188 IM40_05175 IM40_05185 PF12740 Chlorophyllase enzyme IM40_05190 PF01613 Flavin reductase like domain IM40_05195 PF00005 ABC transporter IM40_05200 PF00528 Binding-protein-dependent transport system inner membrane component IM40_05210 PF00216 Bacterial DNA-binding protein IM40_05215 PF04977 Septum formation initiator IM40_05220 PF03572 Peptidase family S41 IM40_05220 PF07676 WD40-like Beta Propeller Repeat IM40_05220 PF14684 Tricorn protease C1 domain IM40_05220 PF14685 Tricorn protease PDZ domain IM40_05225 PF14366 IM40_05225 IM40_05230 PF12706 Beta-lactamase superfamily domain IM40_05235 PF01026 TatD related DNase IM40_05240 PF13177 DNA polymerase III, delta subunit IM40_05245 PF02223 Thymidylate kinase IM40_05250 PF00768 D-alanyl-D-alanine carboxypeptidase IM40_05250 PF07943 Penicillin-binding protein 5, C-terminal domain IM40_05260 PF02698 DUF218 domain IM40_05270 PF03749 Sugar fermentation stimulation protein IM40_05275 PF00557 Metallopeptidase family M24 IM40_05280 PF00753 Metallo-beta-lactamase superfamily IM40_05280 PF07521 RNA-metabolising metallo-beta-lactamase IM40_05285 PF03309 Type III pantothenate kinase IM40_05290 PF02237 Biotin protein ligase C terminal domain IM40_05290 PF03099 Biotin/lipoate A/B protein ligase family IM40_05295 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains IM40_05300 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains IM40_05300 PF01059 IM40_05300 IM40_05305 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains IM40_05305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IM40_05305 PF06455 IM40_05305 IM40_05310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IM40_05315 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IM40_05330 PF04085 rod shape-determining protein MreC IM40_05335 PF06723 MreB/Mbl protein IM40_05350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IM40_05350 PF00364 Biotin-requiring enzyme IM40_05350 PF02817 e3 binding domain IM40_05360 PF00676 Dehydrogenase E1 component IM40_05365 PF01245 Ribosomal protein L19 IM40_05370 PF01746 tRNA (Guanine-1)-methyltransferase IM40_05380 PF00886 Ribosomal protein S16 IM40_05385 PF00448 SRP54-type protein, GTPase domain IM40_05385 PF02881 SRP54-type protein, helical bundle domain IM40_05385 PF02978 Signal peptide binding domain IM40_05390 PF04070 IM40_05390 IM40_05400 PF00923 Transaldolase IM40_05405 PF00589 Phage integrase family IM40_05405 PF02899 Phage integrase, N-terminal SAM-like domain IM40_05415 PF00009 Elongation factor Tu GTP binding domain IM40_05415 PF00679 Elongation factor G C-terminus IM40_05415 PF03144 Elongation factor Tu domain 2 IM40_05445 PF00575 S1 RNA binding domain IM40_05445 PF08529 NusA N-terminal domain IM40_05445 PF13184 NusA-like KH domain IM40_05445 PF14520 Helix-hairpin-helix domain IM40_05450 PF00009 Elongation factor Tu GTP binding domain IM40_05450 PF04760 Translation initiation factor IF-2, N-terminal region IM40_05450 PF08364 IM40_05450 IM40_05450 PF11987 Translation-initiation factor 2 IM40_05455 PF02033 Ribosome-binding factor A IM40_05465 PF13516 Leucine Rich repeat IM40_05470 PF03772 IM40_05470 IM40_05470 PF13567 IM40_05470 IM40_05475 PF00749 tRNA synthetases class I (E and Q), catalytic domain IM40_05480 PF00285 Citrate synthase IM40_05490 PF02673 IM40_05490 IM40_05495 PF00043 Glutathione S-transferase, C-terminal domain IM40_05495 PF13417 Glutathione S-transferase, N-terminal domain IM40_05500 PF00004 ATPase family associated with various cellular activities (AAA) IM40_05500 PF02861 Clp amino terminal domain IM40_05500 PF07724 AAA domain (Cdc48 subfamily) IM40_05500 PF10431 C-terminal, D2-small domain, of ClpB protein IM40_05505 PF00534 Glycosyl transferases group 1 IM40_05505 PF13439 Glycosyltransferase Family 4 IM40_05510 PF16576 IM40_05510 IM40_05525 PF01370 NAD dependent epimerase/dehydratase family IM40_05530 PF01926 50S ribosome-binding GTPase IM40_05530 PF06071 Protein of unknown function (DUF933) IM40_05535 PF01195 Peptidyl-tRNA hydrolase IM40_05540 PF01386 Ribosomal L25p family IM40_05540 PF14693 Ribosomal protein TL5, C-terminal domain IM40_05545 PF02719 Polysaccharide biosynthesis protein IM40_05550 PF01370 NAD dependent epimerase/dehydratase family IM40_05560 PF01878 EVE domain IM40_05565 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IM40_05565 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IM40_05570 PF00814 Glycoprotease family IM40_05580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IM40_05585 PF00510 Cytochrome c oxidase subunit III IM40_05590 PF02104 IM40_05590 IM40_05595 PF00675 Insulinase (Peptidase family M16) IM40_05595 PF05193 Peptidase M16 inactive domain IM40_05600 PF00999 Sodium/hydrogen exchanger family IM40_05600 PF02254 TrkA-N domain IM40_05615 PF01812 5-formyltetrahydrofolate cyclo-ligase family IM40_05620 PF13277 YmdB-like protein IM40_05640 PF01351 Ribonuclease HII IM40_05645 PF13116 IM40_05645 IM40_05645 PF13502 IM40_05645 IM40_05650 PF00578 AhpC/TSA family IM40_05660 PF01145 SPFH domain / Band 7 family IM40_05665 PF13180 PDZ domain IM40_05665 PF13365 Trypsin-like peptidase domain IM40_05670 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IM40_05690 PF02082 Transcriptional regulator IM40_05695 PF00266 Aminotransferase class-V IM40_05700 PF00266 Aminotransferase class-V IM40_05705 PF01592 NifU-like N terminal domain IM40_05710 PF01521 Iron-sulphur cluster biosynthesis IM40_05720 PF00012 Hsp70 protein IM40_05750 PF00390 Malic enzyme, N-terminal domain IM40_05750 PF01515 Phosphate acetyl/butaryl transferase IM40_05750 PF03949 Malic enzyme, NAD binding domain IM40_05755 PF00571 CBS domain IM40_05755 PF01769 Divalent cation transporter IM40_05755 PF03448 MgtE intracellular N domain IM40_05760 PF00108 Thiolase, N-terminal domain IM40_05760 PF02803 Thiolase, C-terminal domain IM40_05765 PF00892 EamA-like transporter family IM40_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_05770 PF03466 LysR substrate binding domain IM40_05790 PF00817 impB/mucB/samB family IM40_05790 PF11799 impB/mucB/samB family C-terminal domain IM40_05790 PF13438 IM40_05790 IM40_05800 PF01548 IM40_05800 IM40_05800 PF02371 IM40_05800 IM40_05830 PF13683 IM40_05830 IM40_05850 PF00072 Response regulator receiver domain IM40_05855 PF01548 IM40_05855 IM40_05855 PF02371 IM40_05855 IM40_05865 PF13516 Leucine Rich repeat IM40_05885 PF13683 IM40_05885 IM40_05895 PF00854 POT family IM40_05905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_05905 PF03466 LysR substrate binding domain IM40_05935 PF01207 Dihydrouridine synthase (Dus) IM40_05940 PF02954 Bacterial regulatory protein, Fis family IM40_05950 PF00072 Response regulator receiver domain IM40_05950 PF00158 Sigma-54 interaction domain IM40_05950 PF02954 Bacterial regulatory protein, Fis family IM40_05955 PF02080 TrkA-C domain IM40_05955 PF02254 TrkA-N domain IM40_05965 PF00072 Response regulator receiver domain IM40_05970 PF03083 Sugar efflux transporter for intercellular exchange IM40_05980 PF10116 IM40_05980 IM40_05990 PF04972 BON domain IM40_06005 PF00596 Class II Aldolase and Adducin N-terminal domain IM40_06040 PF11367 Protein of unknown function (DUF3168) IM40_06135 PF01464 Transglycosylase SLT domain IM40_06140 PF00701 Dihydrodipicolinate synthetase family IM40_06145 PF01668 SmpB protein IM40_06155 PF05532 CsbD-like IM40_06160 PF04972 BON domain IM40_06170 PF02092 IM40_06170 IM40_06170 PF05746 DALR anticodon binding domain IM40_06175 PF02091 Glycyl-tRNA synthetase alpha subunit IM40_06200 PF03358 NADPH-dependent FMN reductase IM40_06210 PF00623 RNA polymerase Rpb1, domain 2 IM40_06210 PF04983 RNA polymerase Rpb1, domain 3 IM40_06210 PF04997 RNA polymerase Rpb1, domain 1 IM40_06210 PF04998 RNA polymerase Rpb1, domain 5 IM40_06210 PF05000 RNA polymerase Rpb1, domain 4 IM40_06215 PF00562 RNA polymerase Rpb2, domain 6 IM40_06215 PF04560 RNA polymerase Rpb2, domain 7 IM40_06215 PF04561 RNA polymerase Rpb2, domain 2 IM40_06215 PF04563 RNA polymerase beta subunit IM40_06215 PF04565 RNA polymerase Rpb2, domain 3 IM40_06215 PF10385 RNA polymerase beta subunit external 1 domain IM40_06220 PF00542 Ribosomal protein L7/L12 C-terminal domain IM40_06220 PF16320 IM40_06220 IM40_06225 PF00466 Ribosomal protein L10 IM40_06230 PF00687 Ribosomal protein L1p/L10e family IM40_06235 PF00298 Ribosomal protein L11, RNA binding domain IM40_06235 PF03946 Ribosomal protein L11, N-terminal domain IM40_06240 PF00467 KOW motif IM40_06240 PF02357 Transcription termination factor nusG IM40_06245 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IM40_06255 PF00009 Elongation factor Tu GTP binding domain IM40_06255 PF03143 Elongation factor Tu C-terminal domain IM40_06255 PF03144 Elongation factor Tu domain 2 IM40_06275 PF00156 Phosphoribosyl transferase domain IM40_06280 PF00462 Glutaredoxin IM40_06285 PF00216 Bacterial DNA-binding protein IM40_06300 PF03364 Polyketide cyclase / dehydrase and lipid transport IM40_06305 PF04055 Radical SAM superfamily IM40_06310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IM40_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_06315 PF00072 Response regulator receiver domain IM40_06315 PF00486 Transcriptional regulatory protein, C terminal IM40_06325 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ IM40_06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_06330 PF13426 PAS domain IM40_06355 PF01192 RNA polymerase Rpb6 IM40_06360 PF02824 TGS domain IM40_06360 PF04607 Region found in RelA / SpoT proteins IM40_06360 PF13291 ACT domain IM40_06360 PF13328 HD domain IM40_06365 PF00004 ATPase family associated with various cellular activities (AAA) IM40_06365 PF02190 ATP-dependent protease La (LON) domain IM40_06365 PF05362 Lon protease (S16) C-terminal proteolytic domain IM40_06370 PF06689 ClpX C4-type zinc finger IM40_06370 PF07724 AAA domain (Cdc48 subfamily) IM40_06370 PF10431 C-terminal, D2-small domain, of ClpB protein IM40_06375 PF00574 Clp protease IM40_06380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IM40_06380 PF05697 Bacterial trigger factor protein (TF) IM40_06380 PF05698 Bacterial trigger factor protein (TF) C-terminus IM40_06400 PF00004 ATPase family associated with various cellular activities (AAA) IM40_06400 PF01434 Peptidase family M41 IM40_06400 PF06480 FtsH Extracellular IM40_06470 PF01734 Patatin-like phospholipase IM40_06475 PF02245 Methylpurine-DNA glycosylase (MPG) IM40_06490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_06490 PF03466 LysR substrate binding domain IM40_06525 PF01131 DNA topoisomerase IM40_06525 PF01396 IM40_06525 IM40_06525 PF01751 Toprim domain IM40_06525 PF13368 IM40_06525 IM40_06530 PF02481 DNA recombination-mediator protein A IM40_06535 PF02660 IM40_06535 IM40_06540 PF00588 SpoU rRNA Methylase family IM40_06540 PF08032 RNA 2'-O ribose methyltransferase substrate binding IM40_06545 PF07690 Major Facilitator Superfamily IM40_06560 PF02630 SCO1/SenC IM40_06565 PF00756 Putative esterase IM40_06570 PF07859 alpha/beta hydrolase fold IM40_06585 PF02502 Ribose/Galactose Isomerase IM40_06610 PF02470 IM40_06610 IM40_06620 PF00633 Helix-hairpin-helix motif IM40_06620 PF00730 HhH-GPD superfamily base excision DNA repair protein IM40_06620 PF10576 Iron-sulfur binding domain of endonuclease III IM40_06635 PF00072 Response regulator receiver domain IM40_06635 PF00486 Transcriptional regulatory protein, C terminal IM40_06640 PF03219 IM40_06640 IM40_06650 PF03109 IM40_06650 IM40_06655 PF00224 Pyruvate kinase, barrel domain IM40_06655 PF02887 Pyruvate kinase, alpha/beta domain IM40_06660 PF00892 EamA-like transporter family IM40_06665 PF00117 Glutamine amidotransferase class-I IM40_06670 PF00163 Ribosomal protein S4/S9 N-terminal domain IM40_06670 PF01479 S4 domain IM40_06680 PF01113 Dihydrodipicolinate reductase, N-terminus IM40_06680 PF05173 Dihydrodipicolinate reductase, C-terminus IM40_06685 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase IM40_06685 PF13450 NAD(P)-binding Rossmann-like domain IM40_06715 PF01330 RuvA N terminal domain IM40_06715 PF07499 RuvA, C-terminal domain IM40_06715 PF14520 Helix-hairpin-helix domain IM40_06720 PF02075 Crossover junction endodeoxyribonuclease RuvC IM40_06725 PF01709 Transcriptional regulator IM40_06770 PF06233 IM40_06770 IM40_06775 PF14107 IM40_06775 IM40_06780 PF02167 Cytochrome C1 family IM40_06785 PF00032 Cytochrome b(C-terminal)/b6/petD IM40_06785 PF00033 Cytochrome b(N-terminal)/b6/petB IM40_06790 PF00355 Rieske [2Fe-2S] domain IM40_06790 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IM40_06795 PF06727 IM40_06795 IM40_06810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_06810 PF03466 LysR substrate binding domain IM40_06815 PF12937 F-box-like IM40_06820 PF01609 Transposase DDE domain IM40_06820 PF13340 IM40_06820 IM40_06825 PF14566 Inositol hexakisphosphate IM40_06835 PF14566 Inositol hexakisphosphate IM40_06840 PF00462 Glutaredoxin IM40_06845 PF01722 BolA-like protein IM40_06850 PF05591 IM40_06850 IM40_06850 PF05943 IM40_06850 IM40_06860 PF04965 Gene 25-like lysozyme IM40_06870 PF02517 CAAX protease self-immunity IM40_06875 PF01106 NifU-like domain IM40_06875 PF08712 Scaffold protein Nfu/NifU N terminal IM40_06885 PF00579 tRNA synthetases class I (W and Y) IM40_06890 PF01012 Electron transfer flavoprotein domain IM40_06895 PF00766 Electron transfer flavoprotein FAD-binding domain IM40_06895 PF01012 Electron transfer flavoprotein domain IM40_06915 PF02609 Exonuclease VII small subunit IM40_06935 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain IM40_06935 PF02785 Biotin carboxylase C-terminal domain IM40_06935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IM40_06940 PF00364 Biotin-requiring enzyme IM40_06945 PF00580 UvrD/REP helicase N-terminal domain IM40_06945 PF13361 UvrD-like helicase C-terminal domain IM40_06950 PF12705 PD-(D/E)XK nuclease superfamily IM40_06955 PF02367 Uncharacterised P-loop hydrolase UPF0079 IM40_06960 PF01648 4'-phosphopantetheinyl transferase superfamily IM40_06965 PF00579 tRNA synthetases class I (W and Y) IM40_06970 PF03023 IM40_06970 IM40_06980 PF03023 IM40_06980 IM40_06990 PF12937 F-box-like IM40_07020 PF00892 EamA-like transporter family IM40_07050 PF00488 MutS domain V IM40_07050 PF01624 MutS domain I IM40_07050 PF05188 MutS domain II IM40_07050 PF05190 MutS family domain IV IM40_07050 PF05192 MutS domain III IM40_07055 PF01494 FAD binding domain IM40_07060 PF00075 RNase H IM40_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_07080 PF00083 Sugar (and other) transporter IM40_07080 PF07690 Major Facilitator Superfamily IM40_07085 PF00162 Phosphoglycerate kinase IM40_07095 PF02559 CarD-like/TRCF domain IM40_07100 PF01297 Periplasmic solute binding protein family IM40_07105 PF00950 IM40_07105 IM40_07120 PF00005 ABC transporter IM40_07125 PF02687 IM40_07125 IM40_07135 PF02698 DUF218 domain IM40_07140 PF01553 Acyltransferase IM40_07145 PF09898 IM40_07145 IM40_07150 PF13855 Leucine rich repeat IM40_07155 PF01161 Phosphatidylethanolamine-binding protein IM40_07165 PF08241 Methyltransferase domain IM40_07170 PF00696 Amino acid kinase family IM40_07170 PF13840 ACT domain IM40_07185 PF00990 GGDEF domain IM40_07190 PF01138 3' exoribonuclease family, domain 1 IM40_07190 PF03725 3' exoribonuclease family, domain 2 IM40_07195 PF01628 HrcA protein C terminal domain IM40_07195 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding IM40_07200 PF01025 GrpE IM40_07210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IM40_07210 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_07215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IM40_07215 PF00364 Biotin-requiring enzyme IM40_07215 PF02817 e3 binding domain IM40_07220 PF00676 Dehydrogenase E1 component IM40_07220 PF02779 Transketolase, pyrimidine binding domain IM40_07220 PF16078 IM40_07220 IM40_07220 PF16870 IM40_07220 IM40_07230 PF00549 CoA-ligase IM40_07230 PF02629 CoA binding domain IM40_07235 PF00549 CoA-ligase IM40_07235 PF08442 ATP-grasp domain IM40_07240 PF00056 lactate/malate dehydrogenase, NAD binding domain IM40_07240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IM40_07245 PF02230 Phospholipase/Carboxylesterase IM40_07250 PF00892 EamA-like transporter family IM40_07260 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IM40_07265 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IM40_07270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IM40_07275 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IM40_07280 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin IM40_07285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IM40_07285 PF10531 SLBB domain IM40_07285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IM40_07290 PF00384 Molybdopterin oxidoreductase IM40_07290 PF09326 IM40_07290 IM40_07290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IM40_07290 PF13510 2Fe-2S iron-sulfur cluster binding domain IM40_07295 PF00146 NADH dehydrogenase IM40_07300 PF12838 4Fe-4S dicluster domain IM40_07305 PF07690 Major Facilitator Superfamily IM40_07365 PF15565 IM40_07365 IM40_07375 PF01381 Helix-turn-helix IM40_07385 PF00571 CBS domain IM40_07385 PF01595 IM40_07385 IM40_07385 PF03471 Transporter associated domain IM40_07410 PF00873 AcrB/AcrD/AcrF family IM40_07425 PF01478 Type IV leader peptidase family IM40_07425 PF06750 IM40_07425 IM40_07430 PF05494 Toluene tolerance, Ttg2 IM40_07440 PF13462 Thioredoxin IM40_07445 PF01491 Frataxin-like domain IM40_07450 PF00005 ABC transporter IM40_07450 PF00664 ABC transporter transmembrane region IM40_07465 PF11019 IM40_07465 IM40_07470 PF00750 tRNA synthetases class I (R) IM40_07470 PF03485 Arginyl tRNA synthetase N terminal domain IM40_07470 PF05746 DALR anticodon binding domain IM40_07480 PF06041 Bacterial protein of unknown function (DUF924) IM40_07510 PF00152 tRNA synthetases class II (D, K and N) IM40_07510 PF01336 OB-fold nucleic acid binding domain IM40_07520 PF01118 Semialdehyde dehydrogenase, NAD binding domain IM40_07520 PF02774 Semialdehyde dehydrogenase, dimerisation domain IM40_07525 PF01734 Patatin-like phospholipase IM40_07530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IM40_07530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IM40_07535 PF06812 IM40_07535 IM40_07540 PF14331 IM40_07540 IM40_07550 PF05936 IM40_07550 IM40_07560 PF05036 Sporulation related domain IM40_07565 PF00294 pfkB family carbohydrate kinase IM40_07575 PF00226 DnaJ domain IM40_07585 PF00571 CBS domain IM40_07585 PF01595 IM40_07585 IM40_07585 PF03471 Transporter associated domain IM40_07590 PF13242 HAD-hyrolase-like IM40_07590 PF13344 Haloacid dehalogenase-like hydrolase IM40_07595 PF02355 Protein export membrane protein IM40_07595 PF07549 SecD/SecF GG Motif IM40_07600 PF02355 Protein export membrane protein IM40_07600 PF07549 SecD/SecF GG Motif IM40_07605 PF02699 Preprotein translocase subunit IM40_07615 PF01975 Survival protein SurE IM40_07620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IM40_07620 PF02403 Seryl-tRNA synthetase N-terminal domain IM40_07640 PF02163 Peptidase family M50 IM40_07645 PF05036 Sporulation related domain IM40_07650 PF01521 Iron-sulphur cluster biosynthesis IM40_07655 PF03372 Endonuclease/Exonuclease/phosphatase family IM40_07660 PF00330 Aconitase family (aconitate hydratase) IM40_07660 PF00694 Aconitase C-terminal domain IM40_07675 PF00892 EamA-like transporter family IM40_07680 PF02016 LD-carboxypeptidase IM40_07685 PF11019 IM40_07685 IM40_07690 PF13561 Enoyl-(Acyl carrier protein) reductase IM40_07695 PF02163 Peptidase family M50 IM40_07700 PF01103 Surface antigen IM40_07700 PF07244 Surface antigen variable number repeat IM40_07705 PF03938 Outer membrane protein (OmpH-like) IM40_07710 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_07710 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IM40_07715 PF07977 FabA-like domain IM40_07720 PF00132 Bacterial transferase hexapeptide (six repeats) IM40_07720 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IM40_07725 PF06230 Protein of unknown function (DUF1009) IM40_07730 PF02684 IM40_07730 IM40_07735 PF03741 IM40_07735 IM40_07740 PF07690 Major Facilitator Superfamily IM40_07760 PF00133 tRNA synthetases class I (I, L, M and V) IM40_07760 PF08264 Anticodon-binding domain of tRNA IM40_07760 PF10458 Valyl tRNA synthetase tRNA binding arm IM40_07765 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_07785 PF02308 IM40_07785 IM40_07790 PF01098 IM40_07790 IM40_07865 PF05309 IM40_07865 IM40_07870 PF06586 IM40_07870 IM40_07885 PF11130 IM40_07885 IM40_07885 PF12846 AAA-like domain IM40_07915 PF06834 IM40_07915 IM40_07925 PF06986 IM40_07925 IM40_07935 PF06122 IM40_07935 IM40_07940 PF07916 IM40_07940 IM40_07955 PF01527 Transposase IM40_07960 PF01548 IM40_07960 IM40_07960 PF02371 IM40_07960 IM40_07965 PF13181 Tetratricopeptide repeat IM40_08005 PF13610 IM40_08005 IM40_08045 PF04352 ProQ/FINO family IM40_08050 PF03693 Uncharacterised protein family (UPF0156) IM40_08080 PF01637 Archaeal ATPase IM40_08105 PF00589 Phage integrase family IM40_08105 PF13356 Domain of unknown function (DUF4102) IM40_08105 PF14659 Phage integrase, N-terminal SAM-like domain IM40_08125 PF02661 Fic/DOC family IM40_08130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_08150 PF13438 IM40_08150 IM40_08155 PF02586 Uncharacterised ACR, COG2135 IM40_08170 PF03070 TENA/THI-4/PQQC family IM40_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_08185 PF03466 LysR substrate binding domain IM40_08195 PF00892 EamA-like transporter family IM40_08210 PF07669 Eco57I restriction-modification methylase IM40_08215 PF13538 UvrD-like helicase C-terminal domain IM40_08215 PF13604 AAA domain IM40_08215 PF14490 Helix-hairpin-helix containing domain IM40_08215 PF14520 Helix-hairpin-helix domain IM40_08220 PF05016 Plasmid stabilisation system protein IM40_08225 PF03693 Uncharacterised protein family (UPF0156) IM40_08250 PF03389 MobA/MobL family IM40_08250 PF13604 AAA domain IM40_08260 PF05016 Plasmid stabilisation system protein IM40_08275 PF13610 IM40_08275 IM40_08285 PF01526 IM40_08285 IM40_08310 PF05016 Plasmid stabilisation system protein IM40_08315 PF01402 Ribbon-helix-helix protein, copG family IM40_08330 PF04014 Antidote-toxin recognition MazE IM40_08335 PF01850 PIN domain IM40_08345 PF01548 IM40_08345 IM40_08345 PF02371 IM40_08345 IM40_08360 PF01548 IM40_08360 IM40_08360 PF02371 IM40_08360 IM40_08365 PF11019 IM40_08365 IM40_08390 PF02661 Fic/DOC family IM40_08395 PF13419 Haloacid dehalogenase-like hydrolase IM40_08405 PF13561 Enoyl-(Acyl carrier protein) reductase IM40_08435 PF01548 IM40_08435 IM40_08435 PF02371 IM40_08435 IM40_08440 PF01527 Transposase IM40_08470 PF04352 ProQ/FINO family IM40_08475 PF03693 Uncharacterised protein family (UPF0156) IM40_08480 PF05016 Plasmid stabilisation system protein IM40_08485 PF02586 Uncharacterised ACR, COG2135 IM40_08520 PF04352 ProQ/FINO family IM40_08560 PF00196 Bacterial regulatory proteins, luxR family IM40_08560 PF00931 NB-ARC domain IM40_08560 PF13424 Tetratricopeptide repeat IM40_08565 PF01548 IM40_08565 IM40_08565 PF02371 IM40_08565 IM40_08595 PF06965 Na+/H+ antiporter 1 IM40_08605 PF00665 Integrase core domain IM40_08605 PF13276 IM40_08605 IM40_08610 PF00398 Ribosomal RNA adenine dimethylase IM40_08615 PF00639 PPIC-type PPIASE domain IM40_08615 PF09312 SurA N-terminal domain IM40_08620 PF03739 IM40_08620 IM40_08625 PF03739 IM40_08625 IM40_08630 PF04453 Organic solvent tolerance protein IM40_08635 PF00534 Glycosyl transferases group 1 IM40_08635 PF13477 Glycosyl transferase 4-like IM40_08640 PF00834 Ribulose-phosphate 3 epimerase family IM40_08650 PF07690 Major Facilitator Superfamily IM40_08660 PF00155 Aminotransferase class I and II IM40_08665 PF03279 IM40_08665 IM40_08670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IM40_08675 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IM40_08680 PF04028 IM40_08680 IM40_08685 PF00005 ABC transporter IM40_08685 PF00664 ABC transporter transmembrane region IM40_08710 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IM40_08715 PF00849 RNA pseudouridylate synthase IM40_08720 PF00521 DNA gyrase/topoisomerase IV, subunit A IM40_08720 PF03989 DNA gyrase C-terminal domain, beta-propeller IM40_08725 PF02565 Recombination protein O C terminal IM40_08725 PF11967 Recombination protein O N terminal IM40_08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_08730 PF03466 LysR substrate binding domain IM40_08735 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IM40_08735 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IM40_08745 PF13717 IM40_08745 IM40_08750 PF13580 SIS domain IM40_08755 PF00294 pfkB family carbohydrate kinase IM40_08755 PF01467 Cytidylyltransferase IM40_08760 PF01786 Alternative oxidase IM40_08765 PF01904 Protein of unknown function DUF72 IM40_08790 PF13505 Outer membrane protein beta-barrel domain IM40_08810 PF00293 NUDIX domain IM40_08815 PF13520 Amino acid permease IM40_08825 PF00196 Bacterial regulatory proteins, luxR family IM40_08825 PF00931 NB-ARC domain IM40_08830 PF13424 Tetratricopeptide repeat IM40_08850 PF00583 Acetyltransferase (GNAT) family IM40_08870 PF07661 IM40_08870 IM40_08875 PF05954 Phage late control gene D protein (GPD) IM40_08880 PF00037 4Fe-4S binding domain IM40_08880 PF11953 Domain of unknown function (DUF3470) IM40_08885 PF01177 Asp/Glu/Hydantoin racemase IM40_08890 PF13242 HAD-hyrolase-like IM40_08890 PF13344 Haloacid dehalogenase-like hydrolase IM40_08895 PF00459 Inositol monophosphatase family IM40_08900 PF01132 Elongation factor P (EF-P) OB domain IM40_08900 PF08207 Elongation factor P (EF-P) KOW-like domain IM40_08900 PF09285 Elongation factor P, C-terminal IM40_08925 PF01043 SecA preprotein cross-linking domain IM40_08925 PF02810 SEC-C motif IM40_08925 PF07516 SecA Wing and Scaffold domain IM40_08925 PF07517 SecA DEAD-like domain IM40_08940 PF10685 IM40_08940 IM40_08950 PF07722 Peptidase C26 IM40_08960 PF13609 Gram-negative porin IM40_08965 PF12100 IM40_08965 IM40_08970 PF00133 tRNA synthetases class I (I, L, M and V) IM40_08970 PF08264 Anticodon-binding domain of tRNA IM40_08970 PF13603 Leucyl-tRNA synthetase, Domain 2 IM40_08975 PF04390 Lipopolysaccharide-assembly IM40_08980 PF00155 Aminotransferase class I and II IM40_08985 PF00884 Sulfatase IM40_08985 PF08019 IM40_08985 IM40_08990 PF01219 Prokaryotic diacylglycerol kinase IM40_09005 PF02195 ParB-like nuclease domain IM40_09010 PF13614 AAA domain IM40_09015 PF02527 rRNA small subunit methyltransferase G IM40_09020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IM40_09020 PF07497 Rho termination factor, RNA-binding domain IM40_09020 PF07498 Rho termination factor, N-terminal domain IM40_09025 PF03653 IM40_09025 IM40_09030 PF00762 Ferrochelatase IM40_09035 PF01208 Uroporphyrinogen decarboxylase (URO-D) IM40_09050 PF01121 Dephospho-CoA kinase IM40_09055 PF00929 Exonuclease IM40_09060 PF02556 Preprotein translocase subunit SecB IM40_09065 PF04280 Tim44-like domain IM40_09080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IM40_09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_09090 PF03466 LysR substrate binding domain IM40_09100 PF00004 ATPase family associated with various cellular activities (AAA) IM40_09100 PF07724 AAA domain (Cdc48 subfamily) IM40_09100 PF10431 C-terminal, D2-small domain, of ClpB protein IM40_09105 PF00227 Proteasome subunit IM40_09110 PF01230 HIT domain IM40_09115 PF07992 Pyridine nucleotide-disulphide oxidoreductase IM40_09120 PF01510 N-acetylmuramoyl-L-alanine amidase IM40_09150 PF13458 Periplasmic binding protein IM40_09155 PF02021 Uncharacterised protein family UPF0102 IM40_09165 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IM40_09165 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IM40_09175 PF01078 Magnesium chelatase, subunit ChlI IM40_09175 PF13335 IM40_09175 IM40_09175 PF13541 Subunit ChlI of Mg-chelatase IM40_09185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IM40_09195 PF00890 FAD binding domain IM40_09195 PF02910 Fumarate reductase flavoprotein C-term IM40_09200 PF13085 2Fe-2S iron-sulfur cluster binding domain IM40_09200 PF13534 4Fe-4S dicluster domain IM40_09210 PF01649 Ribosomal protein S20 IM40_09235 PF03135 IM40_09235 IM40_09245 PF04610 IM40_09245 IM40_09255 PF04335 VirB8 protein IM40_09260 PF03524 Conjugal transfer protein IM40_09265 PF03743 Bacterial conjugation TrbI-like protein IM40_09275 PF00437 Type II/IV secretion system protein IM40_09285 PF02534 Type IV secretory system Conjugative DNA transfer IM40_09300 PF03389 MobA/MobL family IM40_09300 PF13362 Toprim domain IM40_09300 PF13604 AAA domain IM40_09310 PF06412 IM40_09310 IM40_09335 PF04754 IM40_09335 IM40_09340 PF00717 Peptidase S24-like IM40_09345 PF00817 impB/mucB/samB family IM40_09345 PF11799 impB/mucB/samB family C-terminal domain IM40_09345 PF13438 IM40_09345 IM40_09350 PF13374 Tetratricopeptide repeat IM40_09360 PF01548 IM40_09360 IM40_09365 PF06250 IM40_09365 IM40_09370 PF01526 IM40_09370 IM40_09370 PF13700 IM40_09370 IM40_09375 PF00589 Phage integrase family IM40_09385 PF08238 Sel1 repeat IM40_09385 PF13516 Leucine Rich repeat IM40_09400 PF02371 IM40_09400 IM40_09425 PF01381 Helix-turn-helix IM40_09440 PF01548 IM40_09440 IM40_09440 PF02371 IM40_09440 IM40_09455 PF01527 Transposase IM40_09480 PF07929 Plasmid pRiA4b ORF-3-like protein IM40_09510 PF01527 Transposase IM40_09520 PF00665 Integrase core domain IM40_09520 PF13276 IM40_09520 IM40_09530 PF01844 HNH endonuclease IM40_09530 PF08388 IM40_09530 IM40_09545 PF04965 Gene 25-like lysozyme IM40_09550 PF04865 IM40_09550 IM40_09565 PF12571 IM40_09565 IM40_09570 PF04984 Phage tail sheath protein IM40_09570 PF17482 IM40_09570 IM40_09575 PF04985 IM40_09575 IM40_09580 PF10109 IM40_09580 IM40_09590 PF06995 IM40_09590 IM40_09600 PF05954 Phage late control gene D protein (GPD) IM40_09610 PF01734 Patatin-like phospholipase IM40_09615 PF13384 Homeodomain-like domain IM40_09620 PF06250 IM40_09620 IM40_09640 PF00665 Integrase core domain IM40_09645 PF01695 IstB-like ATP binding protein IM40_09675 PF00196 Bacterial regulatory proteins, luxR family IM40_09675 PF00931 NB-ARC domain IM40_09675 PF13176 Tetratricopeptide repeat IM40_09675 PF13374 Tetratricopeptide repeat IM40_09675 PF13424 Tetratricopeptide repeat IM40_09690 PF01609 Transposase DDE domain IM40_09690 PF13808 IM40_09690 IM40_09695 PF00239 Resolvase, N terminal domain IM40_09700 PF04014 Antidote-toxin recognition MazE IM40_09705 PF01850 PIN domain IM40_09715 PF00931 NB-ARC domain IM40_09730 PF13516 Leucine Rich repeat IM40_09740 PF00239 Resolvase, N terminal domain IM40_09745 PF13700 IM40_09745 IM40_09755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IM40_09755 PF08388 IM40_09755 IM40_09805 PF00931 NB-ARC domain IM40_09805 PF13424 Tetratricopeptide repeat IM40_09815 PF00089 Trypsin IM40_09820 PF01734 Patatin-like phospholipase IM40_09825 PF00931 NB-ARC domain IM40_09835 PF00216 Bacterial DNA-binding protein IM40_09850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IM40_09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_09890 PF03466 LysR substrate binding domain IM40_09915 PF11753 IM40_09915 IM40_09920 PF04014 Antidote-toxin recognition MazE IM40_09925 PF01850 PIN domain IM40_09930 PF02498 IM40_09930 IM40_09950 PF00069 Protein kinase domain IM40_09980 PF00216 Bacterial DNA-binding protein IM40_09990 PF13614 AAA domain IM40_10005 PF11638 DnaA N-terminal domain IM40_10020 PF00881 Nitroreductase family IM40_10025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_10025 PF03466 LysR substrate binding domain IM40_10035 PF11753 IM40_10035 IM40_10040 PF03070 TENA/THI-4/PQQC family IM40_10055 PF03135 IM40_10055 IM40_10065 PF04610 IM40_10065 IM40_10075 PF04335 VirB8 protein IM40_10080 PF03524 Conjugal transfer protein IM40_10085 PF03743 Bacterial conjugation TrbI-like protein IM40_10095 PF00437 Type II/IV secretion system protein IM40_10120 PF10412 Type IV secretion-system coupling protein DNA-binding domain IM40_10140 PF03389 MobA/MobL family IM40_10140 PF13362 Toprim domain IM40_10140 PF13604 AAA domain IM40_10150 PF06412 IM40_10150 IM40_10160 PF05406 WGR domain IM40_10170 PF04754 IM40_10170 IM40_10175 PF00817 impB/mucB/samB family IM40_10175 PF11799 impB/mucB/samB family C-terminal domain IM40_10175 PF13438 IM40_10175 IM40_10180 PF00717 Peptidase S24-like IM40_10190 PF01548 IM40_10190 IM40_10190 PF02371 IM40_10190 IM40_10200 PF00196 Bacterial regulatory proteins, luxR family IM40_10200 PF00931 NB-ARC domain IM40_10200 PF13424 Tetratricopeptide repeat IM40_10215 PF01734 Patatin-like phospholipase IM40_10230 PF01527 Transposase IM40_10245 PF00239 Resolvase, N terminal domain IM40_10245 PF02796 Helix-turn-helix domain of resolvase IM40_10260 PF13610 IM40_10260 IM40_10280 PF12937 F-box-like IM40_10285 PF01527 Transposase IM40_10295 PF13610 IM40_10295 IM40_10300 PF12937 F-box-like IM40_10305 PF01548 IM40_10305 IM40_10305 PF02371 IM40_10305 IM40_10310 PF13610 IM40_10310 IM40_10340 PF00069 Protein kinase domain IM40_10345 PF13505 Outer membrane protein beta-barrel domain IM40_10360 PF01548 IM40_10360 IM40_10360 PF02371 IM40_10360 IM40_10380 PF01869 BadF/BadG/BcrA/BcrD ATPase family IM40_10395 PF01381 Helix-turn-helix IM40_10400 PF06250 IM40_10400 IM40_10435 PF00317 Ribonucleotide reductase, all-alpha domain IM40_10435 PF02867 Ribonucleotide reductase, barrel domain IM40_10440 PF00268 Ribonucleotide reductase, small chain IM40_10445 PF11019 IM40_10445 IM40_10465 PF13610 IM40_10465 IM40_10475 PF01548 IM40_10475 IM40_10475 PF02371 IM40_10475 IM40_10480 PF01527 Transposase IM40_10495 PF13610 IM40_10495 IM40_10500 PF05016 Plasmid stabilisation system protein IM40_10505 PF01402 Ribbon-helix-helix protein, copG family IM40_10515 PF01527 Transposase IM40_10520 PF01548 IM40_10520 IM40_10520 PF02371 IM40_10520 IM40_10540 PF11753 IM40_10540 IM40_10550 PF00892 EamA-like transporter family IM40_10560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_10560 PF03466 LysR substrate binding domain IM40_10585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IM40_10615 PF00216 Bacterial DNA-binding protein IM40_10625 PF12937 F-box-like IM40_10645 PF00089 Trypsin IM40_10660 PF02452 PemK-like protein IM40_10670 PF00239 Resolvase, N terminal domain IM40_10670 PF02796 Helix-turn-helix domain of resolvase IM40_10685 PF01527 Transposase IM40_10700 PF01734 Patatin-like phospholipase IM40_10715 PF00196 Bacterial regulatory proteins, luxR family IM40_10715 PF00931 NB-ARC domain IM40_10715 PF13424 Tetratricopeptide repeat IM40_10720 PF13610 IM40_10720 IM40_10730 PF01548 IM40_10730 IM40_10730 PF02371 IM40_10730 IM40_10755 PF00717 Peptidase S24-like IM40_10760 PF00817 impB/mucB/samB family IM40_10760 PF11799 impB/mucB/samB family C-terminal domain IM40_10760 PF13438 IM40_10760 IM40_10765 PF01527 Transposase IM40_10780 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system IM40_10785 PF04352 ProQ/FINO family IM40_10800 PF13365 Trypsin-like peptidase domain IM40_10820 PF01695 IstB-like ATP binding protein IM40_10825 PF00665 Integrase core domain IM40_10835 PF01548 IM40_10835 IM40_10835 PF02371 IM40_10835 IM40_10840 PF01527 Transposase IM40_10845 PF13538 UvrD-like helicase C-terminal domain IM40_10845 PF13604 AAA domain IM40_10845 PF14490 Helix-hairpin-helix containing domain IM40_10845 PF14520 Helix-hairpin-helix domain IM40_10850 PF13610 IM40_10850 IM40_10855 PF13091 PLD-like domain IM40_10865 PF01381 Helix-turn-helix IM40_10870 PF07804 HipA-like C-terminal domain IM40_10870 PF13657 HipA N-terminal domain IM40_10880 PF01527 Transposase IM40_10950 PF01695 IstB-like ATP binding protein IM40_10955 PF07929 Plasmid pRiA4b ORF-3-like protein IM40_10975 PF00717 Peptidase S24-like IM40_10980 PF01695 IstB-like ATP binding protein IM40_10985 PF00665 Integrase core domain IM40_10985 PF13936 Helix-turn-helix domain IM40_10995 PF13610 IM40_10995 IM40_11005 PF01637 Archaeal ATPase IM40_11010 PF01381 Helix-turn-helix IM40_11045 PF03389 MobA/MobL family IM40_11045 PF13362 Toprim domain IM40_11045 PF13604 AAA domain IM40_11055 PF06412 IM40_11055 IM40_11065 PF05406 WGR domain IM40_11070 PF13610 IM40_11070 IM40_11095 PF04070 IM40_11095 IM40_11105 PF01548 IM40_11105 IM40_11105 PF02371 IM40_11105 IM40_11110 PF01527 Transposase IM40_11115 PF01548 IM40_11115 IM40_11115 PF02371 IM40_11115 IM40_11130 PF13612 IM40_11130 IM40_11130 PF13737 IM40_11130 IM40_11140 PF00360 Phytochrome region IM40_11140 PF00512 His Kinase A (phospho-acceptor) domain IM40_11140 PF01590 GAF domain IM40_11140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IM40_11140 PF08446 PAS fold IM40_11150 PF13612 IM40_11150 IM40_11180 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IM40_11180 PF08388 IM40_11180 IM40_11195 PF00437 Type II/IV secretion system protein IM40_11205 PF03743 Bacterial conjugation TrbI-like protein IM40_11210 PF03524 Conjugal transfer protein IM40_11215 PF04335 VirB8 protein IM40_11225 PF04610 IM40_11225 IM40_11235 PF03135 IM40_11235 IM40_11255 PF11753 IM40_11255 IM40_11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IM40_11275 PF03466 LysR substrate binding domain IM40_11280 PF00881 Nitroreductase family IM40_11285 PF00892 EamA-like transporter family IM40_11310 PF13614 AAA domain IM40_11320 PF00216 Bacterial DNA-binding protein IM40_11330 PF04830 IM40_11330 IM40_11330 PF15605 IM40_11330 IM40_11360 PF01713 Smr domain IM40_11365 PF01713 Smr domain IM40_11375 PF01850 PIN domain IM40_11380 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system IM40_11390 PF01548 IM40_11390 IM40_11390 PF02371 IM40_11390 IM40_11420 PF01850 PIN domain IM40_11425 PF04014 Antidote-toxin recognition MazE IM40_11430 PF13610 IM40_11430 IM40_11440 PF01548 IM40_11440 IM40_11440 PF02371 IM40_11440 IM40_11445 PF13438 IM40_11445 IM40_11450 PF04754 IM40_11450 IM40_11455 PF04352 ProQ/FINO family IM40_11460 PF03389 MobA/MobL family IM40_11470 PF06412 IM40_11470 IM40_11480 PF03389 MobA/MobL family IM40_11480 PF13362 Toprim domain IM40_11480 PF13604 AAA domain IM40_11485 PF13728 F plasmid transfer operon protein IM40_11490 PF02534 Type IV secretory system Conjugative DNA transfer