IM40_00010 SM00480 DNA polymerase III beta subunit IM40_00020 SM00387 Histidine kinase-like ATPases IM40_00020 SM00433 TopoisomeraseII IM40_00060 SM00487 DEAD-like helicases superfamily IM40_00060 SM00490 helicase superfamily c-terminal domain IM40_00075 SM00984 UDP binding domain IM40_00160 SM00382 ATPases associated with a variety of cellular activities IM40_00175 SM00460 Transglutaminase/protease-like homologues IM40_00205 SM00271 DnaJ molecular chaperone homology domain IM40_00240 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs IM40_00240 SM00474 3'-5' exonuclease IM40_00240 SM00475 5'-3' exonuclease IM40_00240 SM00479 IM40_00240 IM40_00240 SM00482 DNA polymerase A domain IM40_00290 SM00474 3'-5' exonuclease IM40_00295 SM00116 Domain in cystathionine beta-synthase and other proteins. IM40_00325 SM00072 Guanylate kinase homologues. IM40_00350 SM00464 Found in ATP-dependent protease La (LON) IM40_00365 SM00382 ATPases associated with a variety of cellular activities IM40_00450 SM01133 IM40_00450 IM40_00505 SM00387 Histidine kinase-like ATPases IM40_00505 SM00433 TopoisomeraseII IM40_00565 SM00729 Elongator protein 3, MiaB family, Radical SAM IM40_00575 SM00052 Putative diguanylate phosphodiesterase IM40_00575 SM00267 diguanylate cyclase IM40_00695 SM00845 GatB domain IM40_00715 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain IM40_00715 SM01232 IM40_00715 IM40_00800 SM00450 Rhodanese Homology Domain IM40_00815 SM00347 helix_turn_helix multiple antibiotic resistance protein IM40_00825 SM00267 diguanylate cyclase IM40_00925 SM00853 MutL C terminal dimerisation domain IM40_00925 SM01340 IM40_00925 IM40_01140 SM00382 ATPases associated with a variety of cellular activities IM40_01145 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IM40_01150 SM00822 IM40_01150 IM40_01160 SM00825 Beta-ketoacyl synthase IM40_01200 SM00450 Rhodanese Homology Domain IM40_01245 SM00562 IM40_01245 IM40_01270 SM00062 Bacterial periplasmic substrate-binding proteins IM40_01290 SM00382 ATPases associated with a variety of cellular activities IM40_01320 SM00382 ATPases associated with a variety of cellular activities IM40_01355 SM00382 ATPases associated with a variety of cellular activities IM40_01370 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IM40_01380 SM00947 Carbonic anhydrase IM40_01395 SM01234 IM40_01395 IM40_01460 SM00382 ATPases associated with a variety of cellular activities IM40_01460 SM00843 IM40_01460 IM40_01495 SM00883 Chaperonin 10 Kd subunit IM40_01560 SM00342 helix_turn_helix, arabinose operon control protein IM40_01620 SM00287 Bacterial SH3 domain homologues IM40_01745 SM00358 Double-stranded RNA binding motif IM40_01745 SM00535 Ribonuclease III family IM40_01785 SM00316 Ribosomal protein S1-like RNA-binding domain IM40_01815 SM01329 IM40_01815 IM40_01845 SM00962 SRP54-type protein, GTPase domain IM40_01885 SM00487 DEAD-like helicases superfamily IM40_01885 SM00490 helicase superfamily c-terminal domain IM40_01885 SM00982 IM40_01885 IM40_01885 SM01058 CarD-like/TRCF domain IM40_01965 SM00382 ATPases associated with a variety of cellular activities IM40_02005 SM00838 Elongation factor G C-terminus IM40_02005 SM00889 Elongation factor G, domain IV IM40_02015 SM01403 IM40_02015 IM40_02035 SM01382 IM40_02035 IM40_02035 SM01383 IM40_02035 IM40_02050 SM00322 K homology RNA-binding domain IM40_02070 SM01374 IM40_02070 IM40_02075 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IM40_02140 SM00662 RNA polymerases D IM40_02150 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IM40_02155 SM00382 ATPases associated with a variety of cellular activities IM40_02375 SM00248 ankyrin repeats IM40_02400 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. IM40_02635 SM00421 helix_turn_helix, Lux Regulon IM40_02640 SM00028 Tetratricopeptide repeats IM40_02875 SM00842 Cell division protein FtsA IM40_02880 SM00864 Tubulin/FtsZ family, GTPase domain IM40_02880 SM00865 Tubulin/FtsZ family, C-terminal domain IM40_02900 SM01004 Delta-aminolevulinic acid dehydratase IM40_02925 SM00028 Tetratricopeptide repeats IM40_02940 SM00434 DNA Topoisomerase IV IM40_02955 SM00411 bacterial (prokaryotic) histone like domain IM40_03030 SM00382 ATPases associated with a variety of cellular activities IM40_03045 SM00369 Leucine-rich repeats, typical (most populated) subfamily IM40_03110 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IM40_03210 SM00382 ATPases associated with a variety of cellular activities IM40_03275 SM01400 IM40_03275 IM40_03300 SM00347 helix_turn_helix multiple antibiotic resistance protein IM40_03400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IM40_03400 SM00245 tail specific protease IM40_03435 SM00316 Ribosomal protein S1-like RNA-binding domain IM40_03435 SM00322 K homology RNA-binding domain IM40_03440 SM01387 IM40_03440 IM40_03470 SM00028 Tetratricopeptide repeats IM40_03585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IM40_03585 SM00091 PAS domain IM40_03585 SM00387 Histidine kinase-like ATPases IM40_03610 SM00465 GIY-YIG type nucleases (URI domain) IM40_03625 SM00363 S4 RNA-binding domain IM40_03635 SM00481 DNA polymerase alpha chain like domain IM40_03640 SM00644 IM40_03640 IM40_03650 SM00986 Uracil DNA glycosylase superfamily IM40_03650 SM00987 UreE urease accessory protein, C-terminal domain IM40_03670 SM00292 breast cancer carboxy-terminal domain IM40_03670 SM00532 Ligase N family IM40_03700 SM00360 RNA recognition motif IM40_03775 SM00411 bacterial (prokaryotic) histone like domain IM40_03870 SM00869 Autotransporter beta-domain IM40_03910 SM00220 Serine/Threonine protein kinases, catalytic domain IM40_04035 SM00840 IM40_04035 IM40_04080 SM00984 UDP binding domain IM40_04115 SM00729 Elongator protein 3, MiaB family, Radical SAM IM40_04120 SM00382 ATPases associated with a variety of cellular activities IM40_04120 SM00962 SRP54-type protein, GTPase domain IM40_04120 SM00963 SRP54-type protein, helical bundle domain IM40_04185 SM00493 IM40_04185 IM40_04190 SM00411 bacterial (prokaryotic) histone like domain IM40_04280 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IM40_04285 SM00861 Transketolase, pyrimidine binding domain IM40_04290 SM00478 endonuclease III IM40_04320 SM00244 prohibitin homologues IM40_04345 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain IM40_04375 SM00382 ATPases associated with a variety of cellular activities IM40_04385 SM00382 ATPases associated with a variety of cellular activities IM40_04410 SM00732 Likely ribonuclease with RNase H fold. IM40_04415 SM01152 IM40_04415 IM40_04435 SM00382 ATPases associated with a variety of cellular activities IM40_04470 SM00937 IM40_04470 IM40_04585 SM00382 ATPases associated with a variety of cellular activities IM40_04605 SM00341 Helicase and RNase D C-terminal IM40_04605 SM00474 3'-5' exonuclease IM40_04620 SM00937 IM40_04620 IM40_04650 SM00382 ATPases associated with a variety of cellular activities IM40_04655 SM00382 ATPases associated with a variety of cellular activities IM40_04700 SM01002 Alanine dehydrogenase/PNT, C-terminal domain IM40_04700 SM01003 Alanine dehydrogenase/PNT, N-terminal domain IM40_04755 SM00382 ATPases associated with a variety of cellular activities IM40_04785 SM00116 Domain in cystathionine beta-synthase and other proteins. IM40_04785 SM01091 Transporter associated domain IM40_04800 SM00729 Elongator protein 3, MiaB family, Radical SAM IM40_04840 SM00564 beta-propeller repeat IM40_04845 SM00382 ATPases associated with a variety of cellular activities IM40_04925 SM00062 Bacterial periplasmic substrate-binding proteins IM40_04925 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IM40_04995 SM00873 B3/4 domain IM40_04995 SM00874 tRNA synthetase B5 domain IM40_04995 SM00896 Ferredoxin-fold anticodon binding domain IM40_05000 SM00838 Elongation factor G C-terminus IM40_05090 SM00382 ATPases associated with a variety of cellular activities IM40_05110 SM00822 IM40_05110 IM40_05125 SM00387 Histidine kinase-like ATPases IM40_05155 SM01192 IM40_05155 IM40_05155 SM01193 IM40_05155 IM40_05170 SM00530 Helix-turn-helix XRE-family like proteins IM40_05190 SM00903 Flavin reductase like domain IM40_05195 SM00382 ATPases associated with a variety of cellular activities IM40_05210 SM00411 bacterial (prokaryotic) histone like domain IM40_05220 SM00245 tail specific protease IM40_05230 SM00849 Metallo-beta-lactamase superfamily IM40_05240 SM00382 ATPases associated with a variety of cellular activities IM40_05250 SM00936 Penicillin-binding protein 5, C-terminal domain IM40_05280 SM00849 Metallo-beta-lactamase superfamily IM40_05385 SM00382 ATPases associated with a variety of cellular activities IM40_05385 SM00962 SRP54-type protein, GTPase domain IM40_05385 SM00963 SRP54-type protein, helical bundle domain IM40_05445 SM00316 Ribosomal protein S1-like RNA-binding domain IM40_05445 SM00322 K homology RNA-binding domain IM40_05500 SM00382 ATPases associated with a variety of cellular activities IM40_05500 SM01086 C-terminal, D2-small domain, of ClpB protein IM40_05660 SM00244 prohibitin homologues IM40_05665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IM40_05750 SM00919 Malic enzyme, NAD binding domain IM40_05750 SM01274 IM40_05750 IM40_05755 SM00116 Domain in cystathionine beta-synthase and other proteins. IM40_05755 SM00924 MgtE intracellular N domain IM40_05865 SM00368 Leucine rich repeat, ribonuclease inhibitor type IM40_05950 SM00382 ATPases associated with a variety of cellular activities IM40_05950 SM00448 cheY-homologous receiver domain IM40_05965 SM00448 cheY-homologous receiver domain IM40_05990 SM00749 bacterial OsmY and nodulation domain IM40_06005 SM01007 Class II Aldolase and Adducin N-terminal domain IM40_06140 SM01130 IM40_06140 IM40_06160 SM00749 bacterial OsmY and nodulation domain IM40_06210 SM00663 RNA polymerase I subunit A N-terminus IM40_06235 SM00649 Ribosomal protein L11/L12 IM40_06240 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IM40_06240 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IM40_06285 SM00411 bacterial (prokaryotic) histone like domain IM40_06305 SM00729 Elongator protein 3, MiaB family, Radical SAM IM40_06315 SM00448 cheY-homologous receiver domain IM40_06315 SM00862 Transcriptional regulatory protein, C terminal IM40_06330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IM40_06330 SM00387 Histidine kinase-like ATPases IM40_06355 SM01409 IM40_06355 IM40_06360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IM40_06360 SM00954 Region found in RelA / SpoT proteins IM40_06365 SM00382 ATPases associated with a variety of cellular activities IM40_06365 SM00464 Found in ATP-dependent protease La (LON) IM40_06370 SM00382 ATPases associated with a variety of cellular activities IM40_06370 SM00994 ClpX C4-type zinc finger IM40_06370 SM01086 C-terminal, D2-small domain, of ClpB protein IM40_06400 SM00382 ATPases associated with a variety of cellular activities IM40_06525 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain IM40_06525 SM00437 Bacterial DNA topoisomerase I DNA-binding domain IM40_06525 SM00493 IM40_06525 IM40_06535 SM01207 IM40_06535 IM40_06540 SM00967 RNA 2'-O ribose methyltransferase substrate binding IM40_06620 SM00478 endonuclease III IM40_06620 SM00525 IM40_06620 IM40_06635 SM00448 cheY-homologous receiver domain IM40_06635 SM00862 Transcriptional regulatory protein, C terminal IM40_06670 SM00363 S4 RNA-binding domain IM40_06670 SM01390 IM40_06670 IM40_06825 SM01301 IM40_06825 IM40_06835 SM01301 IM40_06835 IM40_06875 SM00932 Scaffold protein Nfu/NifU N terminal IM40_06890 SM00893 Electron transfer flavoprotein domain IM40_06895 SM00893 Electron transfer flavoprotein domain IM40_06935 SM00878 Biotin carboxylase C-terminal domain IM40_06990 SM00256 A Receptor for Ubiquitination Targets IM40_07050 SM00533 DNA-binding domain of DNA mismatch repair MUTS family IM40_07050 SM00534 ATPase domain of DNA mismatch repair MUTS family IM40_07095 SM01058 CarD-like/TRCF domain IM40_07120 SM00382 ATPases associated with a variety of cellular activities IM40_07140 SM00563 Phosphate acyltransferases IM40_07185 SM00267 diguanylate cyclase IM40_07220 SM00861 Transketolase, pyrimidine binding domain IM40_07230 SM00881 CoA binding domain IM40_07285 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IM40_07290 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IM40_07375 SM00530 Helix-turn-helix XRE-family like proteins IM40_07385 SM01091 Transporter associated domain IM40_07445 SM01219 IM40_07445 IM40_07450 SM00382 ATPases associated with a variety of cellular activities IM40_07470 SM00836 DALR anticodon binding domain IM40_07470 SM01016 Arginyl tRNA synthetase N terminal dom IM40_07520 SM00859 Semialdehyde dehydrogenase, NAD binding domain IM40_07530 SM01002 Alanine dehydrogenase/PNT, C-terminal domain IM40_07530 SM01003 Alanine dehydrogenase/PNT, N-terminal domain IM40_07575 SM00271 DnaJ molecular chaperone homology domain IM40_07585 SM01091 Transporter associated domain IM40_07605 SM01323 IM40_07605 IM40_07695 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IM40_07705 SM00935 Outer membrane protein (OmpH-like) IM40_07965 SM00671 Sel1-like repeats. IM40_08215 SM00382 ATPases associated with a variety of cellular activities IM40_08290 SM00256 A Receptor for Ubiquitination Targets IM40_08330 SM00966 SpoVT / AbrB like domain IM40_08560 SM00028 Tetratricopeptide repeats IM40_08560 SM00421 helix_turn_helix, Lux Regulon IM40_08610 SM00650 Ribosomal RNA adenine dimethylases IM40_08685 SM00382 ATPases associated with a variety of cellular activities IM40_08720 SM00434 DNA Topoisomerase IV IM40_08825 SM00421 helix_turn_helix, Lux Regulon IM40_08830 SM00028 Tetratricopeptide repeats IM40_08900 SM00841 Elongation factor P, C-terminal IM40_08900 SM01185 IM40_08900 IM40_08925 SM00957 SecA DEAD-like domain IM40_08925 SM00958 SecA preprotein cross-linking domain IM40_09005 SM00470 ParB-like nuclease domain IM40_09020 SM00357 Cold shock protein domain IM40_09020 SM00382 ATPases associated with a variety of cellular activities IM40_09020 SM00959 Rho termination factor, N-terminal domain IM40_09055 SM00479 IM40_09055 IM40_09065 SM00978 IM40_09065 IM40_09100 SM00382 ATPases associated with a variety of cellular activities IM40_09100 SM01086 C-terminal, D2-small domain, of ClpB protein IM40_09120 SM00644 IM40_09120 IM40_09175 SM00382 ATPases associated with a variety of cellular activities IM40_09350 SM00671 Sel1-like repeats. IM40_09385 SM00368 Leucine rich repeat, ribonuclease inhibitor type IM40_09385 SM00671 Sel1-like repeats. IM40_09425 SM00530 Helix-turn-helix XRE-family like proteins IM40_09530 SM00507 HNH nucleases IM40_09645 SM00382 ATPases associated with a variety of cellular activities IM40_09675 SM00028 Tetratricopeptide repeats IM40_09675 SM00421 helix_turn_helix, Lux Regulon IM40_09700 SM00966 SpoVT / AbrB like domain IM40_09730 SM00368 Leucine rich repeat, ribonuclease inhibitor type IM40_09740 SM00857 Resolvase, N terminal domain IM40_09805 SM00028 Tetratricopeptide repeats IM40_09835 SM00411 bacterial (prokaryotic) histone like domain IM40_09920 SM00966 SpoVT / AbrB like domain IM40_09930 SM01040 BRO family, N-terminal domain IM40_09950 SM00220 Serine/Threonine protein kinases, catalytic domain IM40_09980 SM00411 bacterial (prokaryotic) histone like domain IM40_10200 SM00028 Tetratricopeptide repeats IM40_10200 SM00421 helix_turn_helix, Lux Regulon IM40_10245 SM00857 Resolvase, N terminal domain IM40_10280 SM00256 A Receptor for Ubiquitination Targets IM40_10300 SM00256 A Receptor for Ubiquitination Targets IM40_10340 SM00220 Serine/Threonine protein kinases, catalytic domain IM40_10395 SM00530 Helix-turn-helix XRE-family like proteins IM40_10615 SM00411 bacterial (prokaryotic) histone like domain IM40_10655 SM00367 Leucine-rich repeat - CC (cysteine-containing) subfamily IM40_10670 SM00857 Resolvase, N terminal domain IM40_10715 SM00028 Tetratricopeptide repeats IM40_10715 SM00421 helix_turn_helix, Lux Regulon IM40_10820 SM00382 ATPases associated with a variety of cellular activities IM40_10865 SM00530 Helix-turn-helix XRE-family like proteins IM40_10980 SM00382 ATPases associated with a variety of cellular activities IM40_11010 SM00530 Helix-turn-helix XRE-family like proteins IM40_11140 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IM40_11140 SM00387 Histidine kinase-like ATPases IM40_11140 SM00388 His Kinase A (phosphoacceptor) domain IM40_11320 SM00411 bacterial (prokaryotic) histone like domain IM40_11425 SM00966 SpoVT / AbrB like domain IM40_11455 SM00945 ProQ/FINO family