locus strain_id interpro function go others IM40_00010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001001|IPR022634|IPR022635|IPR022637 DNA polymerase III, beta sliding clamp|DNA polymerase III, beta sliding clamp, C-terminal|DNA polymerase III, beta sliding clamp, N-terminal|DNA polymerase III, beta sliding clamp, central GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 G3DSA:3.70.10.10|PF00712|PF02767|PF02768|PIRSF000804|SM00480|SSF55979|TIGR00663 IM40_00015 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001238|IPR003395|IPR018078|IPR027417 DNA-binding, RecF|DNA-binding, RecF, conserved site|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal GO:0003697|GO:0005524|GO:0006281 G3DSA:1.20.1050.90|G3DSA:3.40.50.300|MF_00365|PF02463|PS00617|PS00618|SSF52540|TIGR00611 IM40_00020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000565|IPR001241|IPR002288|IPR003594|IPR006171|IPR011557|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568|IPR036890 DNA gyrase B subunit, C-terminal|DNA gyrase, subunit B|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B|DNA topoisomerase, type IIA, subunit B, C-terminal|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_01898|PF00204|PF00986|PF01751|PF02518|PR00418|PR01159|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01059 IM40_00040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003817|IPR033175 Phosphatidylserine decarboxylase, archaeal-type|Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 MF_00664|PF02666|TIGR00164 IM40_00045 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000462|IPR012616 CDP-alcohol phosphatidyltransferase|CDP-alcohol phosphatidyltransferase, C-terminal GO:0008654|GO:0016020|GO:0016780 G3DSA:1.20.120.1760|PF01066|PF08009|PS00379 IM40_00050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010941|IPR022211|IPR029058 Alpha/Beta hydrolase fold|Poly-beta-hydroxybutyrate polymerase N-terminal|Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 PF07167|PF12551|SSF53474 IM40_00060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001650|IPR004609|IPR011545|IPR012340|IPR014001|IPR027417|IPR033454 ATP-dependent DNA helicase RecG|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|RecG, wedge domain GO:0003676|GO:0004003|GO:0005524|GO:0006281|GO:0006310 G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00270|PF00271|PF17191|SM00487|SM00490|SSF50249|SSF52540|TIGR00643 IM40_00065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004813|IPR004814 Oligopeptide transporter OPT|Oligopeptide transporter, OPT superfamily GO:0055085 PF03169|TIGR00728|TIGR00733 IM40_00075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR017476|IPR028359|IPR036220|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0016616|GO:0016628|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 IM40_00080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000683|IPR001451|IPR011004|IPR036291 Hexapeptide repeat|NAD(P)-binding domain superfamily|Oxidoreductase, N-terminal|Trimeric LpxA-like superfamily GO:0016491 G3DSA:2.160.10.10|G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00132|PF01408|PF14602|SSF51161|SSF51735|SSF55347 IM40_00085 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000653|IPR015421|IPR015422|IPR015424 DegT/DnrJ/EryC1/StrS aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01041|PIRSF000390|SSF53383 IM40_00090 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001962|IPR006426|IPR017932|IPR029055 Asparagine synthase|Asparagine synthase, glutamine-hydrolyzing|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal GO:0004066|GO:0006529 G3DSA:3.60.20.10|PF00733|PF13537|PIRSF001589|SSF52402|SSF56235|TIGR01536 IM40_00095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 IM40_00105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003425 CCB3/YggT GO:0016020 PF02325 IM40_00110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000672|IPR020630|IPR020631|IPR020867|IPR036291 NAD(P)-binding domain superfamily|Tetrahydrofolate dehydrogenase/cyclohydrolase|Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0004488|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_01576|PF00763|PF02882|PR00085|PS00767|SSF51735|SSF53223 IM40_00120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011042 Six-bladed beta-propeller, TolB-like G3DSA:2.120.10.30|SSF63825 IM40_00130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011042 Six-bladed beta-propeller, TolB-like G3DSA:2.120.10.30|G3DSA:2.40.10.500|SSF63829 IM40_00135 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000421|IPR008928|IPR008979|IPR010598 Coagulation factor 5/8 C-terminal domain|D-glucuronyl C5-epimerase, C-terminal|Galactose-binding-like domain superfamily|Six-hairpin glycosidase superfamily GO:0003824 G3DSA:2.60.120.260|PF00754|PF06662|SSF48208|SSF49785 IM40_00140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001962|IPR006426|IPR017932|IPR029055 Asparagine synthase|Asparagine synthase, glutamine-hydrolyzing|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal GO:0004066|GO:0006529 G3DSA:3.60.20.10|PF00733|PF13537|PIRSF001589|SSF52402|SSF56235|TIGR01536 IM40_00145 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF13439|PF13692|SSF53756 IM40_00150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic G3DSA:3.40.50.2000|SSF53756 IM40_00160 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR029439 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Wzt, C-terminal GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF14524|PS00211|SM00382|SSF52540 IM40_00175 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002931|IPR038765 Papain-like cysteine peptidase superfamily|Transglutaminase-like G3DSA:3.10.620.30|PF01841|SM00460|SSF54001 IM40_00180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004638|IPR011701|IPR036259 Drug resistance transporter EmrB/QacA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00711 IM40_00185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF00529|PF16576|SSF111369 IM40_00200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012725|IPR013126|IPR018181|IPR029047|IPR029048 Chaperone DnaK|Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain superfamily|Heat shock protein 70kD, peptide-binding domain superfamily GO:0005524|GO:0006457|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.30.30|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_00332|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR02350 IM40_00205 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001305|IPR001623|IPR002939|IPR008971|IPR012724|IPR018253|IPR036410|IPR036869 Chaperone DnaJ|Chaperone DnaJ, C-terminal|Chaperone J-domain superfamily|DnaJ domain|DnaJ domain, conserved site|HSP40/DnaJ peptide-binding|Heat shock protein DnaJ, cysteine-rich domain|Heat shock protein DnaJ, cysteine-rich domain superfamily GO:0005524|GO:0006457|GO:0009408|GO:0031072|GO:0051082 G3DSA:1.10.287.110|G3DSA:2.10.230.10|G3DSA:2.60.260.20|MF_01152|PF00226|PF00684|PF01556|PR00625|PS00636|SM00271|SSF46565|SSF49493|SSF57938|TIGR02349 IM40_00210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 IM40_00220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003734 Domain of unknown function DUF155 PF02582 IM40_00230 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002524|IPR027469|IPR027470|IPR036837 Cation efflux protein|Cation efflux protein, cytoplasmic domain|Cation efflux protein, cytoplasmic domain superfamily|Cation efflux transmembrane domain superfamily GO:0006812|GO:0008324|GO:0016021|GO:0055085 G3DSA:1.20.1510.10|G3DSA:3.30.70.1350|PF01545|PF16916|SSF160240|SSF161111|TIGR01297 IM40_00240 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001098|IPR002298|IPR002421|IPR002562|IPR008918|IPR012337|IPR013520|IPR018320|IPR019760|IPR020045|IPR020046|IPR029060|IPR036279|IPR036397 3'-5' exonuclease domain|5'-3' exonuclease, C-terminal domain superfamily|5'-3' exonuclease, N-terminal|5'-3' exonuclease, alpha-helical arch, N-terminal|DNA polymerase 1|DNA polymerase A|DNA polymerase I-like, H3TH domain|DNA-directed DNA polymerase, family A, conserved site|DNA-directed DNA polymerase, family A, palm domain|Exonuclease, RNase T/DNA polymerase III|Helix-hairpin-helix motif, class 2|PIN-like domain superfamily|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003824|GO:0003887|GO:0006139|GO:0006260|GO:0006261|GO:0008408 G3DSA:1.10.150.20|G3DSA:1.20.1060.10|G3DSA:3.30.420.10|G3DSA:3.30.70.370|G3DSA:3.40.50.1010|PF00476|PF01367|PF01612|PF02739|PR00868|PS00447|SM00279|SM00474|SM00475|SM00479|SM00482|SSF47807|SSF53098|SSF56672|SSF88723|TIGR00593 IM40_00245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00391|PD003101|PF00468|TIGR01030 IM40_00255 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001482|IPR007831|IPR027417|IPR037257 General secretory system II, protein E, N-terminal|General secretory system II, protein E, N-terminal superfamily|P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|SSF160246|SSF52540 IM40_00260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018076 Type II secretion system F domain G3DSA:1.20.81.30|PF00482 IM40_00270 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012902 Prokaryotic N-terminal methylation site G3DSA:3.30.700.10|PF07963|PS00409|SSF54523|TIGR02532 IM40_00290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002562|IPR012337|IPR036397 3'-5' exonuclease domain|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0006139|GO:0008408 G3DSA:3.30.420.10|PF01612|SM00474|SSF53098 IM40_00295 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000644|IPR001347|IPR004800 CBS domain|Phosphosugar isomerase, KdsD/KpsF-type|Sugar isomerase (SIS) GO:0005975|GO:0016853|GO:0097367|GO:1901135 G3DSA:3.10.580.10|G3DSA:3.40.50.10490|PF00571|PF01380|PIRSF004692|SM00116|SSF53697|TIGR00393 IM40_00300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010664 Lipopolysaccharide assembly, LptC-related PF06835 IM40_00305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005653 Organic solvent tolerance-like, N-terminal G3DSA:2.60.450.10|PF03968 IM40_00320 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004670|IPR023171 Na+/H+ antiporter NhaA|Na/H antiporter domain superfamily GO:0006814|GO:0006885|GO:0016021 G3DSA:1.20.1530.10|MF_01844|PF06965|TIGR00773 IM40_00325 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008145|IPR017665|IPR027417 Guanylate kinase|Guanylate kinase/L-type calcium channel beta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0004385|GO:0006163 G3DSA:3.30.63.10|G3DSA:3.40.50.300|MF_00328|PF00625|SM00072|SSF52540|TIGR03263 IM40_00330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00710 IM40_00335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1740.10|PF13520|PIRSF006060 IM40_00345 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990|IPR013766|IPR017937|IPR036249 Tetratricopeptide-like helical domain superfamily|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0005515|GO:0045454 G3DSA:1.25.40.10|G3DSA:3.40.30.10|PF00085|PF14559|PF14561|PR00421|PS00194|SSF48452|SSF52833 IM40_00350 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003111|IPR015947 Lon, substrate-binding domain|PUA-like superfamily G3DSA:2.30.130.40|PF02190|SM00464|SSF88697 IM40_00355 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005651|IPR038053 Trm112-like|Uncharacterised protein family UPF0434 G3DSA:2.20.25.10|MF_01187|PF03966|SSF158997 IM40_00360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PF03379|PR01414 IM40_00365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR005895|IPR027417 AAA+ ATPase domain|ABC transporter, haem export, CcmA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005215|GO:0005524|GO:0016887|GO:0017004 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540|TIGR01189 IM40_00370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000086|IPR003561|IPR015797|IPR020084|IPR020476 Mutator MutT|NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily GO:0006281|GO:0008413|GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PS00893|SSF55811|TIGR00586 IM40_00375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007848|IPR029063 Methyltransferase small domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF05175|SSF53335 IM40_00380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain superfamily|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 IM40_00390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001611|IPR032675 Leucine-rich repeat|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:3.80.10.10|PF13516|SSF52047 IM40_00435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003774 Protein of unknown function UPF0301 G3DSA:3.40.1740.10|MF_00758|PF02622|SSF143456 IM40_00445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002150|IPR027491|IPR034704 L28p-like|Ribosomal protein L31|Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.50|MF_00501|PF01197|PR01249|PS01143|SSF143800|TIGR00105 IM40_00450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002915|IPR013785 Aldolase-type TIM barrel|DeoC/FbaB/ lacD aldolase GO:0003824|GO:0016829 G3DSA:3.20.20.70|PF01791|PIRSF038992|SM01133|SSF51569 IM40_00465 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) G3DSA:2.40.160.60|PF03349|SSF56935 IM40_00470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 IM40_00475 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|SSF53901|TIGR01930 IM40_00480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|SSF48179|SSF51735|SSF52096 IM40_00485 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 IM40_00490 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029069 HotDog domain superfamily G3DSA:3.10.129.10|PF13279|SSF54637 IM40_00495 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 IM40_00500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001466|IPR012338 Beta-lactamase-related|Beta-lactamase/transpeptidase-like G3DSA:3.40.710.10|PF00144|SSF56601 IM40_00505 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000565|IPR001241|IPR002288|IPR003594|IPR005737|IPR006171|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568|IPR036890 DNA gyrase B subunit, C-terminal|DNA topoisomerase IV, subunit B, Gram-negative|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B|DNA topoisomerase, type IIA, subunit B, C-terminal|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_00938|PF00204|PF00986|PF01751|PF02518|PR00418|PR01159|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01055 IM40_00510 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007667 Hypoxia induced protein, domain PF04588 IM40_00515 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016030|IPR029499|IPR036451 ATP:cob(I)alamin adenosyltransferase, PduO-type|Cobalamin adenosyltransferase-like|Cobalamin adenosyltransferase-like superfamily G3DSA:1.20.1200.10|PD007457|PF01923|SSF89028|TIGR00636 IM40_00520 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009078|IPR011566|IPR012347 Ferritin-like|Ferritin-like superfamily|Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 G3DSA:1.20.1260.10|MF_01658|PF03232|SSF47240 IM40_00530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032816 SNARE associated Golgi protein PF09335 IM40_00560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002637|IPR020922|IPR029001 Ham1-like protein|Inosine triphosphate pyrophosphatase-like|dITP/XTP pyrophosphatase GO:0009143|GO:0017111|GO:0047429 G3DSA:3.90.950.10|MF_01405|PF01725|SSF52972|TIGR00042 IM40_00565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004559|IPR006638|IPR007197|IPR010723|IPR023404 Elp3/MiaB/NifB|HemN, C-terminal|Oxygen-independent coproporphyrinogen III oxidase-like|Radical SAM|Radical SAM, alpha/beta horseshoe GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:3.80.30.20|PF04055|PF06969|SM00729|SSF102114|TIGR00539 IM40_00570 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001405|IPR010994|IPR020891|IPR025657 RadC-like JAB domain|RuvA domain 2-like|Uncharacterised protein family UPF0758|Uncharacterised protein family UPF0758, conserved site G3DSA:1.10.150.20|G3DSA:3.40.140.10|PF04002|PS01302|SSF102712|SSF47781|TIGR00608 IM40_00575 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000160|IPR001633|IPR029787|IPR035919 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00990|SM00052|SM00267|SSF141868|SSF55073 IM40_00585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000883|IPR014241|IPR023615|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I bacterial type|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0005886|GO:0009060|GO:0015990|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|PR01165|PS00077|SSF81442|TIGR02891 IM40_00590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000537|IPR006369|IPR030470 Protohaem IX farnesyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0008495|GO:0016021|GO:0016765|GO:0048034 G3DSA:1.10.357.140|MF_00154|PF01040|PS00943|TIGR01473 IM40_00600 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007533|IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11|Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily GO:0005507 G3DSA:2.60.370.10|MF_00155|PF04442|PIRSF005413|SSF110111 IM40_00610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 MF_01129|PF03030|PIRSF001265|TIGR01104 IM40_00630 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002068|IPR008978 Alpha crystallin/Hsp20 domain|HSP20-like chaperone G3DSA:2.60.40.790|PF00011|SSF49764 IM40_00650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR027843|IPR032710 Domain of unknown function DUF4440|NTF2-like domain superfamily G3DSA:3.10.450.50|PF14534|SSF54427 IM40_00655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002541|IPR003557 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004|GO:0020037 PF01578|PR01386|TIGR01191 IM40_00665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004329|IPR036127 CcmE-like superfamily|CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 G3DSA:2.40.50.140|MF_01959|PF03100|SSF82093 IM40_00675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 MF_01398|PF00430 IM40_00680 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PF00430 IM40_00685 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000454|IPR002379|IPR020537|IPR035921|IPR038662 ATP synthase, F0 complex, subunit C|ATP synthase, F0 complex, subunit C, DCCD-binding site|F/V-ATP synthase subunit C superfamily|F1F0 ATP synthase subunit C superfamily|V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015986|GO:0015991|GO:0033177|GO:0045263 G3DSA:1.20.20.10|MF_01396|PF00137|PR00124|PS00605|SSF81333 IM40_00690 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000568|IPR023011|IPR035908 ATP synthase, F0 complex, subunit A|ATP synthase, F0 complex, subunit A superfamily|ATP synthase, F0 complex, subunit A, active site GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.120.220|MF_01393|PF00119|PR00123|PS00449|SSF81336|TIGR01131 IM40_00695 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003789|IPR004413|IPR006075|IPR014746|IPR017958|IPR018027|IPR023168 Asn/Gln amidotransferase|Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic|Aspartyl/glutamyl-tRNA amidotransferase subunit B-like|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit|Glutamine synthetase/guanido kinase, catalytic domain|Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0003824|GO:0016874|GO:0016884 G3DSA:1.10.10.410|G3DSA:1.10.150.380|MF_00121|PF02637|PF02934|PS01234|SM00845|SSF55931|SSF89095|TIGR00133 IM40_00700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004412|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 G3DSA:3.90.1300.10|MF_00120|PF01425|SSF75304|TIGR00132 IM40_00705 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003837|IPR036113 Glu-tRNAGln amidotransferase C subunit|Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 G3DSA:1.10.20.60|MF_00122|PF02686|SSF141000|TIGR00135 IM40_00710 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004033|IPR023576|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|UbiE/COQ5 methyltransferase|UbiE/COQ5 methyltransferase, conserved site GO:0008168 G3DSA:3.40.50.150|MF_01813|PF01209|PS01183|PS01184|SSF53335|TIGR01934 IM40_00715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010663|IPR010979|IPR012319|IPR015886|IPR015887|IPR020629|IPR035937 DNA glycosylase/AP lyase, H2TH DNA-binding|DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site|Formamidopyrimidine-DNA glycosylase|Formamidopyrimidine-DNA glycosylase, catalytic domain|MutM-like, N-terminal|Ribosomal protein S13-like, H2TH|Zinc finger, FPG/IleRS-type GO:0003676|GO:0003677|GO:0003684|GO:0003906|GO:0006281|GO:0006284|GO:0006289|GO:0008270|GO:0008534|GO:0016799 G3DSA:1.10.8.50|G3DSA:3.20.190.10|MF_00103|PF01149|PF06827|PF06831|PS01242|SM00898|SM01232|SSF46946|SSF57716|SSF81624|TIGR00577 IM40_00725 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009078|IPR012347|IPR019052 Domain of unknown function DUF2383|Ferritin-like|Ferritin-like superfamily G3DSA:1.20.1260.10|PF09537|SSF47240 IM40_00730 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup PF00477 IM40_00735 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_00740 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 IM40_00755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007410|IPR036182 Copper chaperone PCuAC|Copper chaperone PCuAC superfamily G3DSA:2.60.40.1890|PF04314|SSF110087 IM40_00765 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000943|IPR007127|IPR007624|IPR007627|IPR007630|IPR007631|IPR009042|IPR012760|IPR013324|IPR013325|IPR014284|IPR028630|IPR036388 RNA polymerase sigma factor 70, non-essential domain|RNA polymerase sigma factor 70, region 1.1|RNA polymerase sigma factor RpoD|RNA polymerase sigma factor RpoD, C-terminal|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.220.120|G3DSA:1.10.601.10|MF_00963|PF00140|PF03979|PF04539|PF04542|PF04545|PF04546|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02393|TIGR02937 IM40_00775 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010280|IPR029063 (Uracil-5)-methyltransferase family|S-adenosyl-L-methionine-dependent methyltransferase GO:0006396|GO:0008173 G3DSA:2.40.50.140|G3DSA:3.40.1350.30|G3DSA:3.40.50.150|PF05958|SSF53335 IM40_00780 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018753 Azospirillum phage Cd, Gp10 PF10073 IM40_00795 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF01135|SSF53335 IM40_00800 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 IM40_00805 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003423|IPR010130 Outer membrane efflux protein|Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954|TIGR01844 IM40_00815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 IM40_00820 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR023393 START-like domain superfamily G3DSA:3.30.530.20|SSF55961 IM40_00825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000160|IPR011006|IPR029787|IPR035965 CheY-like superfamily|GGDEF domain|Nucleotide cyclase|PAS domain superfamily G3DSA:3.30.450.20|G3DSA:3.30.70.270|G3DSA:3.40.50.2300|PF00990|PF12860|SM00267|SSF52172|SSF55073|SSF55785|TIGR00254 IM40_00840 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004655|IPR013747|IPR013751|IPR016039 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III|3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal|3-oxoacyl-[acyl-carrier-protein] synthase 3|Thiolase-like GO:0003824|GO:0004315|GO:0006633 G3DSA:3.40.47.10|MF_01815|PF08541|PF08545|SSF53901|TIGR00747 IM40_00855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002504|IPR016064|IPR017437|IPR017438 ATP-NAD kinase, PpnK-type, C-terminal|Inorganic polyphosphate/ATP-NAD kinase, N-terminal|NAD kinase|NAD kinase/diacylglycerol kinase-like domain superfamily GO:0003951|GO:0006741|GO:0019674 G3DSA:2.60.200.30|G3DSA:3.40.50.10330|MF_00361|PF01513|SSF111331 IM40_00860 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 G3DSA:3.40.50.1980|PF01297|SSF53807 IM40_00870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002201 Glycosyl transferase, family 9 GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756 IM40_00900 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 IM40_00905 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019401 Zinc finger, CHCC-type G3DSA:2.60.260.40|PF10276 IM40_00915 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002877|IPR015507|IPR029063 Ribosomal RNA large subunit methyltransferase E|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0001510|GO:0008168|GO:0032259 G3DSA:3.40.50.150|MF_01547|PF01728|PIRSF005461|SSF53335 IM40_00920 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001678|IPR023267|IPR029063 RNA (C5-cytosine) methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 G3DSA:3.40.50.150|PF01189|PR02008|SSF53335 IM40_00925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002099|IPR013507|IPR014721|IPR014762|IPR014790|IPR020568|IPR020667|IPR036890|IPR037198 DNA mismatch repair protein family, N-terminal|DNA mismatch repair protein, S5 domain 2-like|DNA mismatch repair protein, MutL|DNA mismatch repair, conserved site|Histidine kinase/HSP90-like ATPase superfamily|MutL, C-terminal domain superfamily|MutL, C-terminal, dimerisation|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0006298|GO:0030983 G3DSA:2.30.42.20|G3DSA:3.30.1370.100|G3DSA:3.30.230.10|G3DSA:3.30.565.10|MF_00149|PF01119|PF08676|PF13589|PS00058|SM00853|SM01340|SSF118116|SSF54211|SSF55874|TIGR00585 IM40_00930 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001672|IPR018189 Phosphoglucose isomerase (PGI)|Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 G3DSA:3.40.50.10490|PF00342|PR00662|PS00174|SSF53697 IM40_00935 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007863|IPR011249|IPR011765 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal GO:0003824|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|SSF63411 IM40_00945 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021395 Protein of unknown function DUF3035 PF11233 IM40_00955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001412|IPR002300|IPR002301|IPR009008|IPR009080|IPR010663|IPR013155|IPR014729|IPR023585 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Isoleucine-tRNA ligase|Isoleucine-tRNA ligase, type 1|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|Zinc finger, FPG/IleRS-type GO:0000166|GO:0002161|GO:0004812|GO:0004822|GO:0005524|GO:0005737|GO:0006418|GO:0006428 G3DSA:1.10.730.20|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02002|PF00133|PF06827|PF08264|PR00984|PS00178|SSF47323|SSF50677|SSF52374|TIGR00392 IM40_00960 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001437|IPR006359|IPR018151|IPR022691|IPR023459|IPR028624|IPR036805|IPR036953 Transcription elongation factor GreA|Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, N-terminal domain superfamily|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|PF01272|PF03449|PIRSF006092|PS00829|SSF46557|SSF54534|TIGR01462 IM40_00965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009367 Mitochondrial fission protein ELM1-like PF06258 IM40_00975 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005822|IPR005823|IPR036899 Ribosomal protein L13|Ribosomal protein L13 superfamily|Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 G3DSA:3.90.1180.10|MF_01366|PF00572|PIRSF002181|SSF52161|TIGR01066 IM40_00980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000754|IPR014721|IPR020568|IPR020574|IPR023035 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S9|Ribosomal protein S9, bacterial/plastid|Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.230.10|MF_00532_B|PF00380|PS00360|SSF54211 IM40_00985 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13489|SSF53335 IM40_01010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001261|IPR002933|IPR005941|IPR011650|IPR036264 ArgE/DapE/ACY1/CPG2/YscS, conserved site|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain|Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0006508|GO:0008237|GO:0009014|GO:0009089|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|MF_01690|PF01546|PF07687|PS00759|SSF53187|SSF55031|TIGR01246 IM40_01015 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001451|IPR011004|IPR023180|IPR037133 Hexapeptide repeat|Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily|Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1|Trimeric LpxA-like superfamily G3DSA:1.10.166.10|G3DSA:2.160.10.10|PF00132|PF14602|PF14805|SSF51161 IM40_01020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003795|IPR038695 Protein of unknown function DUF192|Saro_0823-like superfamily G3DSA:2.60.120.1140|PF02643 IM40_01025 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004506|IPR014729|IPR023382 Adenine nucleotide alpha hydrolase-like domains|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-specific 2-thiouridylase GO:0008033|GO:0016740|GO:0016783 G3DSA:2.30.30.280|G3DSA:2.40.30.10|G3DSA:3.40.50.620|MF_00144|PF03054|SSF52402|TIGR00420 IM40_01030 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR015324|IPR029063 Ribosomal protein Rsm22-like|S-adenosyl-L-methionine-dependent methyltransferase GO:0006412|GO:0008168 G3DSA:3.40.50.150|PF09243|SSF53335 IM40_01035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_01040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SSF56281 IM40_01055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_01095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001260|IPR036406 Coproporphyrinogen III oxidase, aerobic|Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 G3DSA:3.40.1500.10|MF_00333|PF01218|PIRSF000166|PR00073|SSF102886 IM40_01100 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001537|IPR016914|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (cytidine/uridine-2'-O-)-methyltransferase|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0001510|GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.40.1280.10|MF_01885|PF00588|PIRSF029256|SSF75217 IM40_01110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002668|IPR011657 Concentrative nucleoside transporter C-terminal domain|Concentrative nucleoside transporter N-terminal domain PF01773|PF07662 IM40_01120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002327|IPR009056|IPR036909 Cytochrome c, class IA/ IB|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|PR00604|SSF46626 IM40_01125 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|PF00496|PIRSF002741|SSF53850 IM40_01130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 IM40_01135 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000515|IPR025966|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Oligopeptide transport permease C-like, N-terminal domain GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 IM40_01140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540 IM40_01145 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001227|IPR004410|IPR014043|IPR016035|IPR016036|IPR020801|IPR024925 Acyl transferase|Acyl transferase domain superfamily|Acyl transferase/acyl hydrolase/lysophospholipase|Malonyl CoA-acyl carrier protein transacylase|Malonyl CoA-acyl carrier protein transacylase, FabD-type|Malonyl-CoA ACP transacylase, ACP-binding|Polyketide synthase, acyl transferase domain GO:0004314|GO:0016740 G3DSA:3.30.70.250|G3DSA:3.40.366.10|PF00698|PIRSF000446|SM00827|SSF52151|SSF55048|TIGR00128 IM40_01150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR011284|IPR020904|IPR036291 3-oxoacyl-(acyl-carrier-protein) reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0004316|GO:0006633|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01830 IM40_01155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003231|IPR006162|IPR009081|IPR036736 ACP-like superfamily|Acyl carrier protein (ACP)|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain GO:0006633 G3DSA:1.10.1200.10|MF_01217|PD000887|PF00550|PS00012|SSF47336|TIGR00517 IM40_01160 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014030|IPR014031|IPR016039|IPR017568|IPR018201|IPR020841 3-oxoacyl-[acyl-carrier-protein] synthase 2|Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like GO:0003824|GO:0006633|GO:0016747 G3DSA:3.40.47.10|PF00109|PF02801|PIRSF000447|PS00606|SM00825|SSF53901|TIGR03150 IM40_01165 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003770 Endolytic murein transglycosylase G3DSA:1.10.8.1150|G3DSA:3.30.160.60|MF_02065|PF02618|TIGR00247 IM40_01180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000682|IPR029063 Protein-L-isoaspartate(D-aspartate) O-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0004719|GO:0006464 G3DSA:3.40.50.150|MF_00090|PF01135|PS01279|SSF53335|TIGR00080 IM40_01185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025518|IPR027269 Hypothetical PA1492 domain superfamily|Protein of unknown function DUF4406 G3DSA:3.40.50.10400|PF14359|SSF52309 IM40_01200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001763|IPR020936|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily|Uncharacterised protein family UPF0176 G3DSA:3.30.70.100|G3DSA:3.40.250.10|MF_00469|PF00581|SM00450|SSF52821 IM40_01205 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007479|IPR036762 ISC system FeS cluster assembly, IscX|IscX-like superfamily GO:0016226 G3DSA:1.10.10.600|PF04384|PIRSF039003|SSF140319|TIGR03412 IM40_01210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001041|IPR001055|IPR012675|IPR018298|IPR036010 2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Adrenodoxin|Adrenodoxin, iron-sulphur binding site|Beta-grasp domain superfamily GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PR00355|PS00814|SSF54292 IM40_01215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002081|IPR005101|IPR006050|IPR014729|IPR018394|IPR036134|IPR036155 Cryptochrome/DNA photolyase class 1|Cryptochrome/DNA photolyase class 1, conserved site, C-terminal|Cryptochrome/DNA photolyase, FAD-binding domain|Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily|Cryptochrome/photolyase, N-terminal domain superfamily|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|PR00147|PS00394|PS00691|SSF48173|SSF52425 IM40_01225 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR013317|IPR027417 Chromosomal replication initiator protein DnaA|P-loop containing nucleoside triphosphate hydrolase G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00308|SSF52540 IM40_01235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000462|IPR004570 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016020|GO:0016021|GO:0016780 G3DSA:1.20.120.1760|PF01066|PIRSF000847|PS00379 IM40_01240 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018642 Protein of unknown function DUF2066 PF09839 IM40_01245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001564|IPR023005|IPR034907|IPR036850 Nucleoside diphosphate kinase|Nucleoside diphosphate kinase, active site|Nucleoside diphosphate kinase-like domain|Nucleoside diphosphate kinase-like domain superfamily GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 G3DSA:3.30.70.141|MF_00451|PF00334|PR01243|PS00469|SM00562|SSF54919 IM40_01250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007459|IPR036768 DNA polymerase III chi subunit, HolC|DNA polymerase III subunit chi superfamily GO:0003677|GO:0003887|GO:0006260 G3DSA:3.40.50.10110|PF04364|SSF102400 IM40_01255 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000819|IPR008283|IPR011356|IPR023042 Peptidase M17, leucine aminopeptidase|Peptidase M17, leucine aminopeptidase/peptidase B|Peptidase M17, leucyl aminopeptidase, C-terminal|Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0005737|GO:0006508|GO:0008235|GO:0019538|GO:0030145 G3DSA:3.40.220.10|G3DSA:3.40.630.10|MF_00181|PF00883|PF02789|PR00481|SSF52949|SSF53187 IM40_01260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001705|IPR011332|IPR018264|IPR038584 Ribosomal protein L33|Ribosomal protein L33 superfamily|Ribosomal protein L33, conserved site|Zinc-binding ribosomal protein GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.20.28.120|MF_00294|PF00471|PS00582|SSF57829|TIGR01023 IM40_01270 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001638|IPR005115 Solute-binding protein family 3/N-terminal domain of MltF|Uncharacterised domain UPF0126 G3DSA:3.40.190.10|PF00497|PF03458|SM00062|SSF53850 IM40_01290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 IM40_01305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003489|IPR032528|IPR036567|IPR038416 Ribosome hibernation promoting factor/RaiA|Ribosome hibernation promotion factor-like|Sigma 54 modulation/S30EA ribosomal protein, C-terminal|Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily GO:0044238 G3DSA:3.30.160.100|G3DSA:3.30.505.50|PF02482|PF16321|SSF69754 IM40_01310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000109|IPR005279|IPR018456|IPR036259 Dipeptide/tripeptide permease|MFS transporter superfamily|PTR2 family proton/oligopeptide symporter, conserved site|Proton-dependent oligopeptide transporter family GO:0005215|GO:0006857|GO:0015833|GO:0016020|GO:0022857|GO:0055085|GO:1904680 G3DSA:1.20.1250.20|PF00854|PS01022|SSF103473|TIGR00924 IM40_01320 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR022374|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|Energy-dependent translational throttle protein EttA|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0045900 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540|TIGR03719 IM40_01335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_01350 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000544|IPR004143|IPR020605 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Octanoyltransferase|Octanoyltransferase, conserved site GO:0006464|GO:0009249|GO:0033819 G3DSA:3.30.930.10|MF_00013|PD006086|PF03099|PIRSF016262|PS01313|SSF55681|TIGR00214 IM40_01355 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR013765|IPR020584|IPR023400|IPR027417 AAA+ ATPase domain|DNA recombination and repair protein RecA|DNA recombination and repair protein RecA, C-terminal|DNA recombination/repair protein RecA, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003697|GO:0005524|GO:0006259|GO:0006281|GO:0008094 G3DSA:3.30.250.10|G3DSA:3.40.50.300|MF_00268|PF00154|PR00142|PS00321|SM00382|SSF52540|SSF54752|TIGR02012 IM40_01360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005545|IPR011008 Dimeric alpha-beta barrel|YCII-related PF03795|SSF54909 IM40_01370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002318|IPR003156|IPR009000|IPR012947|IPR018162|IPR018163|IPR018164|IPR023033 Alanine-tRNA ligase, class IIc|Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily|Alanine-tRNA ligase, eukaryota/bacteria|Alanyl-tRNA synthetase, class IIc, N-terminal|DHHA1 domain|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily|Translation protein, beta-barrel domain superfamily GO:0000166|GO:0003676|GO:0004812|GO:0004813|GO:0005524|GO:0005737|GO:0006419|GO:0043039 G3DSA:2.40.30.130|G3DSA:3.10.310.40|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|MF_00036_B|PF01411|PF02272|PF07973|PR00980|SM00863|SSF101353|SSF50447|SSF55186|SSF55681|TIGR00344 IM40_01380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001765|IPR015892|IPR036874 Carbonic anhydrase|Carbonic anhydrase superfamily|Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 G3DSA:3.40.1050.10|PF00484|PS00704|SM00947|SSF53056 IM40_01390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006197|IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C GO:0003677|GO:0006355 G3DSA:2.10.109.10|PF00717|PR00726|SSF51306 IM40_01395 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002696 Putative membrane protein insertion efficiency factor MF_00386|PD004225|PF01809|SM01234|TIGR00278 IM40_01400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001708|IPR019998|IPR028053|IPR028055|IPR038210|IPR038221 Membrane insertase YidC/ALB3/OXA1/COX18|Membrane insertase YidC|Membrane insertase YidC, N-terminal|Membrane insertase YidC, periplasmic domain|Membrane insertase YidC/Oxa1, C-terminal|YidC, periplasmic domain superfamily GO:0016021|GO:0032977 G3DSA:2.70.98.90|MF_01810|PF02096|PF14849|PR00701|PR01900|TIGR03592|TIGR03593 IM40_01405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006073|IPR019987|IPR027417 GTP binding domain|GTP-binding protein, ribosome biogenesis, YsxC|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|MF_00321|PF01926|SSF52540|TIGR03598 IM40_01435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509 IM40_01455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004564|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein carrier protein LolA-like G3DSA:2.50.20.10|PF03548|SSF89392 IM40_01460 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002543|IPR003593|IPR018541|IPR025199|IPR027417|IPR036388|IPR036390 AAA+ ATPase domain|DNA translocase FtsK, 4TM region|FtsK domain|FtsK gamma domain|P-loop containing nucleoside triphosphate hydrolase|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0000166|GO:0003677|GO:0005524 G3DSA:1.10.10.10|G3DSA:3.30.980.40|G3DSA:3.40.50.300|PF01580|PF09397|PF13491|SM00382|SM00843|SSF46785|SSF52540 IM40_01475 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016040|IPR036291 NAD(P)-binding domain|NAD(P)-binding domain superfamily G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|PR01713|SSF51735 IM40_01480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 IM40_01485 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 IM40_01495 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011032|IPR018369|IPR020818|IPR037124 Chaperonin GroES, conserved site|GroES chaperonin family|GroES chaperonin superfamily|GroES-like superfamily GO:0005524|GO:0005737|GO:0006457 G3DSA:2.30.33.40|MF_00580|PF00166|PR00297|PS00681|SM00883|SSF50129 IM40_01500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001844|IPR002423|IPR018370|IPR027409|IPR027410|IPR027413 Chaperonin Cpn60|Chaperonin Cpn60, conserved site|Chaperonin Cpn60/TCP-1 family|GroEL-like apical domain superfamily|GroEL-like equatorial domain superfamily|TCP-1-like chaperonin intermediate domain superfamily GO:0005524|GO:0005737|GO:0006457|GO:0042026 G3DSA:1.10.560.10|G3DSA:3.30.260.10|G3DSA:3.50.7.10|MF_00600|PF00118|PR00298|PS00296|SSF48592|SSF52029|SSF54849|TIGR02348 IM40_01530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005821|IPR027359 Ion transport domain|Voltage-dependent channel domain superfamily GO:0005216|GO:0006811|GO:0016020|GO:0055085 G3DSA:1.10.287.70|G3DSA:1.20.120.350|PF00520|SSF81324 IM40_01550 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003829|IPR011051|IPR012093|IPR014710 Pirin|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PIRSF006232|SSF51182 IM40_01560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001497|IPR004026|IPR014048|IPR016221|IPR018060|IPR035451|IPR036217|IPR036388|IPR036631 Ada DNA repair, metal-binding|Ada-like domain superfamily|Bifunctional regulatory protein Ada|DNA binding HTH domain, AraC-type|Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0003824|GO:0003908|GO:0006281|GO:0006355|GO:0008168|GO:0008270|GO:0043565 G3DSA:1.10.10.10|G3DSA:1.10.10.60|G3DSA:3.30.160.70|G3DSA:3.40.10.10|PF01035|PF02805|PF12833|PIRSF000409|PS00374|SM00342|SSF46767|SSF53155|SSF57884|TIGR00589 IM40_01575 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 IM40_01615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036047 F-box-like domain superfamily GO:0005515 SSF81383|SSF82171 IM40_01620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003646|IPR010466 Protein of unknown function DUF1058|SH3-like domain, bacterial-type G3DSA:2.30.30.40|PF06347|SM00287 IM40_01625 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008181|IPR029054|IPR036157 Deoxyuridine triphosphate nucleotidohydrolase|dUTPase-like|dUTPase-like superfamily GO:0004170|GO:0046080 G3DSA:2.70.40.10|MF_00116|PF00692|SSF51283|TIGR00576 IM40_01665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016181 Acyl-CoA N-acyltransferase SSF55729 IM40_01675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_01695 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001188|IPR006059 Bacterial extracellular solute-binding protein|Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 G3DSA:3.40.190.10|PF13416|PIRSF019574|PR00909|SSF53850 IM40_01700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010732 Type VI secretion, TssG-like PF06996|TIGR03347 IM40_01705 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010272 Type VI secretion system, TssF-like PF05947|PIRSF028304|TIGR03359 IM40_01710 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002925|IPR029058 Alpha/Beta hydrolase fold|Dienelactone hydrolase GO:0016787 G3DSA:3.40.50.1820|PF01738|SSF53474 IM40_01715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001406|IPR020095|IPR020097|IPR020103 Pseudouridine synthase I, TruA|Pseudouridine synthase I, TruA, C-terminal|Pseudouridine synthase I, TruA, alpha/beta domain|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.70.580|G3DSA:3.30.70.660|MF_00171|PF01416|PIRSF001430|SSF55120|TIGR00071 IM40_01720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001555|IPR002376|IPR005793|IPR005794|IPR011034|IPR036477|IPR037022 Formyl transferase, C-terminal|Formyl transferase, C-terminal domain superfamily|Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Formyl transferase-like, C-terminal domain superfamily|Methionyl-tRNA formyltransferase|Phosphoribosylglycinamide formyltransferase, active site GO:0003824|GO:0004479|GO:0009058|GO:0016742|GO:0071951 G3DSA:3.10.25.10|G3DSA:3.40.50.170|MF_00182|PF00551|PF02911|PS00373|SSF50486|SSF53328|TIGR00460 IM40_01725 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR023635|IPR036821 Peptide deformylase|Peptide deformylase superfamily G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|SSF56420|TIGR00079 IM40_01740 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000223|IPR015927|IPR019757|IPR019758|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C|Peptidase S26A, signal peptidase I|Peptidase S26A, signal peptidase I, conserved site|Peptidase S26A, signal peptidase I, lysine active site GO:0006508|GO:0008236|GO:0016020|GO:0016021 G3DSA:2.10.109.10|G3DSA:2.170.230.10|PF00717|PR00727|PS00760|PS00761|SSF51306|TIGR02227 IM40_01745 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000999|IPR011907|IPR014720|IPR036389 Double-stranded RNA-binding domain|Ribonuclease III|Ribonuclease III domain|Ribonuclease III, endonuclease domain superfamily GO:0003723|GO:0004525|GO:0006396|GO:0016075 G3DSA:1.10.1520.10|G3DSA:3.30.160.20|MF_00104|PF00035|PF14622|PS00517|SM00358|SM00535|SSF54768|SSF69065|TIGR02191 IM40_01750 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004044|IPR005225|IPR005662|IPR006073|IPR009019|IPR015946|IPR027417 GTP binding domain|GTP-binding protein Era|K Homology domain, type 2|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0003723|GO:0005525|GO:0005622 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00367|PF01926|PF07650|PR00326|SSF52540|SSF54814|TIGR00231|TIGR00436 IM40_01755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000668|IPR038765 Papain-like cysteine peptidase superfamily|Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 G3DSA:3.90.70.10|PF00112|SSF54001 IM40_01780 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 IM40_01785 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004368|IPR006196|IPR012340|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1 GO:0003723|GO:0003743|GO:0006413 G3DSA:2.40.50.140|MF_00075|PF01176|SM00316|SSF50249|TIGR00008 IM40_01795 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 PF10150 IM40_01800 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005584|IPR013088 DNA gyrase inhibitor YacG|Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 G3DSA:3.30.50.10|MF_00649|PF03884|SSF57716 IM40_01805 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR014358|IPR036291 Enoyl-[acyl-carrier-protein] reductase (NADH)|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR GO:0004318|GO:0006633|GO:0055114 G3DSA:3.40.50.720|PF13561|PIRSF000094|PR00081|SSF51735 IM40_01810 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002142|IPR004634|IPR004635|IPR029045 ClpP/crotonase-like domain superfamily|Peptidase S49|Peptidase S49, SppA|Peptidase S49, protease IV GO:0006465|GO:0006508|GO:0008233|GO:0016021 G3DSA:3.40.1750.10|G3DSA:3.90.226.10|PF01343|PIRSF001217|SSF52096|TIGR00705|TIGR00706 IM40_01815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.30.70.1570|G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659 IM40_01840 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001172|IPR001543|IPR012826|IPR036429 Flagellar motor switch FliN|Flagellar motor switch FliN/Type III secretion HrcQb|SpoA-like superfamily|Surface presentation of antigen (SpoA) GO:0003774|GO:0006935|GO:0009288|GO:0009425|GO:0016020|GO:0071973 G3DSA:2.30.330.10|PF01052|PR00956|SSF101801|TIGR02480 IM40_01845 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000897|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 G3DSA:3.40.50.300|PF00448|SM00962|SSF52540 IM40_01850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025501|IPR025669|IPR027417 AAA domain|ATP binding protein MinD|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|PIRSF003092|SSF52540 IM40_01855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR006352|IPR016055|IPR016066|IPR036900 Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, C-terminal domain superfamily|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site|Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|MF_01554_B|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|SSF53738|SSF55957|TIGR01455 IM40_01860 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000415|IPR020051|IPR029479 Nitroreductase|Nitroreductase-like|SagB-type dehydrogenase domain GO:0016491 G3DSA:3.40.109.10|PF00881|SSF55469|TIGR03605 IM40_01880 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029045|IPR032259 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 G3DSA:3.90.226.40|PF16113|SSF52096 IM40_01885 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001650|IPR003711|IPR004576|IPR005118|IPR011545|IPR014001|IPR027417|IPR036101|IPR037235 CarD-like/TRCF domain|CarD-like/TRCF domain superfamily|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|TRCF-like, C-terminal domain|Transcription-repair coupling factor|Transcription-repair-coupling factor, C-terminal domain GO:0003676|GO:0003684|GO:0005524|GO:0006281 G3DSA:2.30.30.840|G3DSA:3.30.2060.10|G3DSA:3.40.50.11180|G3DSA:3.40.50.300|G3DSA:3.90.1150.50|MF_00969|PF00270|PF00271|PF02559|PF03461|SM00487|SM00490|SM00982|SM01058|SSF141259|SSF143517|SSF52540|TIGR00580 IM40_01890 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007138|IPR011008 Antibiotic biosynthesis monooxygenase domain|Dimeric alpha-beta barrel G3DSA:3.30.70.100|PF03992|SSF54909 IM40_01895 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_01940 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036734 Neurotransmitter-gated ion-channel ligand-binding domain superfamily GO:0005230|GO:0006811|GO:0016021 G3DSA:2.70.170.10|SSF63712 IM40_01945 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007844 AsmA PF05170 IM40_01955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR031566 Putative citrate transporter PF16980 IM40_01960 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003453|IPR030802|IPR036513 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE|STAS domain superfamily GO:0043190 PF02405|SSF52091|TIGR00056 IM40_01965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 IM40_01975 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005586 ABC-type transport auxiliary lipoprotein component G3DSA:3.40.50.10610|PF03886|SSF159594 IM40_01980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006214 Bax inhibitor 1-related PF01027 IM40_01995 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005679|IPR006032|IPR012340 Nucleic acid-binding, OB-fold|Ribosomal protein S12, bacterial-type|Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:2.40.50.140|MF_00403_B|PF00164|PIRSF002133|PR01034|PS00055|SSF50249|TIGR00981 IM40_02000 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000235|IPR005717|IPR020606|IPR023798|IPR036823 Ribosomal protein S5/S7|Ribosomal protein S7 domain|Ribosomal protein S7 domain superfamily|Ribosomal protein S7, bacterial/organellar-type|Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412|GO:0015935 G3DSA:1.10.455.10|MF_00480_B|PF00177|PIRSF002122|PS00052|SSF47973|TIGR01029 IM40_02005 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000640|IPR000795|IPR004161|IPR004540|IPR005225|IPR005517|IPR009000|IPR014721|IPR020568|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG/EF2|Translation elongation factor EFG/EF2, domain IV|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00054_B|PF00009|PF00679|PF03144|PF03764|PF14492|PR00315|PS00301|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980|TIGR00231|TIGR00484 IM40_02010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 IM40_02015 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001848|IPR018268|IPR027486|IPR036838 Ribosomal protein S10|Ribosomal protein S10 domain|Ribosomal protein S10 domain superfamily|Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.600|MF_00508|PF00338|PR00971|PS00361|SM01403|SSF54999|TIGR01049 IM40_02020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000597|IPR009000|IPR019926|IPR019927 Ribosomal protein L3|Ribosomal protein L3, bacterial/organelle-type|Ribosomal protein L3, conserved site|Translation protein, beta-barrel domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.30.10|G3DSA:2.40.50.620|MF_01325_B|PF00297|PS00474|SSF50447|TIGR03625 IM40_02025 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002136|IPR013005|IPR023574 50S ribosomal protein uL4|Ribosomal protein L4 domain superfamily|Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 G3DSA:3.40.1370.10|MF_01328_B|PF00573|SSF52166|TIGR03953 IM40_02030 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012677|IPR012678|IPR013025 Nucleotide-binding alpha-beta plait domain superfamily|Ribosomal protein L23/L15e core domain superfamily|Ribosomal protein L25/L23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.330|MF_01369_B|PF00276|SSF54189 IM40_02035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002171|IPR005880|IPR008991|IPR012340|IPR014722|IPR014726|IPR022666|IPR022669|IPR022671 Nucleic acid-binding, OB-fold|Ribosomal Proteins L2, RNA binding domain|Ribosomal protein L2|Ribosomal protein L2, C-terminal|Ribosomal protein L2, bacterial/organellar-type|Ribosomal protein L2, conserved site|Ribosomal protein L2, domain 2|Ribosomal protein L2, domain 3|Translation protein SH3-like domain superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934|GO:0016740 G3DSA:2.30.30.30|G3DSA:2.40.50.140|G3DSA:4.10.950.10|MF_01320_B|PF00181|PF03947|PIRSF002158|PS00467|SM01382|SM01383|SSF50104|SSF50249|TIGR01171 IM40_02040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002222|IPR005732|IPR020934|IPR023575 Ribosomal protein S19 conserved site|Ribosomal protein S19, bacterial-type|Ribosomal protein S19, superfamily|Ribosomal protein S19/S15 GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.860.10|MF_00531|PF00203|PIRSF002144|PR00975|PS00323|SSF54570|TIGR01050 IM40_02045 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001063|IPR005727|IPR036394 Ribosomal protein L22, bacterial/chloroplast-type|Ribosomal protein L22/L17|Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0015934 G3DSA:3.90.470.10|MF_01331_B|PF00237|SSF54843|TIGR01044 IM40_02050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001351|IPR004044|IPR004087|IPR005704|IPR009019|IPR015946|IPR018280|IPR036419 K Homology domain|K Homology domain, type 2|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|Ribosomal protein S3, C-terminal|Ribosomal protein S3, C-terminal domain superfamily|Ribosomal protein S3, bacterial|Ribosomal protein S3, conserved site GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.1140.32|G3DSA:3.30.300.20|MF_01309_B|PF00189|PF07650|PS00548|SM00322|SSF54814|SSF54821|TIGR01009 IM40_02055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000114|IPR016180|IPR020798|IPR036920 Ribosomal protein L10e/L16|Ribosomal protein L10e/L16 superfamily|Ribosomal protein L16|Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.1170.10|MF_01342|PF00252|PR00060|PS00586|PS00701|SSF54686|TIGR01164 IM40_02060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001854|IPR018254|IPR036049 Ribosomal protein L29, conserved site|Ribosomal protein L29/L35|Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.310|MF_00374|PF00831|PS00579|SSF46561|TIGR00012 IM40_02065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000266|IPR012340|IPR019984 30S ribosomal protein S17|Nucleic acid-binding, OB-fold|Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.140|MF_01345_B|PD001295|PF00366|PR00973|SSF50249|TIGR03635 IM40_02070 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000218|IPR005745|IPR019972|IPR036853 Ribosomal protein L14 superfamily|Ribosomal protein L14P|Ribosomal protein L14P, conserved site|Ribosomal protein L14P, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0015934 G3DSA:2.40.150.20|MF_01367|PF00238|PS00049|SM01374|SSF50193|TIGR01067 IM40_02075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003256|IPR005824|IPR005825|IPR008991|IPR014722 KOW|Ribosomal protein L2, domain 2|Ribosomal protein L24|Ribosomal protein L24/L26, conserved site|Translation protein SH3-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.30|MF_01326_B|PF00467|PF17136|PS01108|SM00739|SSF50104|TIGR01079 IM40_02080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002132|IPR020929|IPR020930|IPR022803|IPR031309|IPR031310 Ribosomal protein L5|Ribosomal protein L5 domain superfamily|Ribosomal protein L5, C-terminal|Ribosomal protein L5, N-terminal|Ribosomal protein L5, bacterial-type|Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1440.10|MF_01333_B|PF00281|PF00673|PIRSF002161|PS00358|SSF55282 IM40_02085 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001209|IPR018271|IPR023036 Ribosomal protein S14|Ribosomal protein S14, bacterial/plastid|Ribosomal protein S14, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.830.10|MF_00537|PF00253|PS00527|SSF57716 IM40_02090 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000630|IPR035987 Ribosomal protein S8|Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.1370.30|G3DSA:3.30.1490.10|MF_01302_B|PF00410|PS00053|SSF56047 IM40_02095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000702|IPR002358|IPR019906|IPR020040|IPR036789 Ribosomal protein L6|Ribosomal protein L6, alpha-beta domain|Ribosomal protein L6, alpha-beta domain superfamily|Ribosomal protein L6, bacterial-type|Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.930.12|MF_01365_B|PF00347|PIRSF002162|PR00059|PS00525|SSF56053|TIGR03654 IM40_02100 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004389|IPR005484 Ribosomal protein L18|Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.100|MF_01337_B|PF00861|SSF53137|TIGR00060 IM40_02105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005324|IPR005712|IPR013810|IPR014721|IPR018192|IPR020568 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S5, C-terminal|Ribosomal protein S5, N-terminal|Ribosomal protein S5, N-terminal, conserved site|Ribosomal protein S5, bacterial-type GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.160.20|G3DSA:3.30.230.10|MF_01307_B|PF00333|PF03719|PS00585|SSF54211|SSF54768|TIGR01021 IM40_02110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005996|IPR016082|IPR036919 Ribosomal protein L30, bacterial-type|Ribosomal protein L30, ferredoxin-like fold domain|Ribosomal protein L30, ferredoxin-like fold domain superfamily GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.1390.20|MF_01371_B|PF00327|PIRSF002211|SSF55129|TIGR01308 IM40_02115 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005749|IPR021131|IPR030878|IPR036227 Ribosomal L18e/L15P superfamily|Ribosomal protein L15|Ribosomal protein L15, bacterial-type|Ribosomal protein L18e/L15P GO:0003735|GO:0006412|GO:0015934 G3DSA:3.100.10.10|MF_01341|PF00828|SSF52080|TIGR01071 IM40_02120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002208|IPR023201|IPR026593|IPR030659 Protein translocase subunit SecY|SecY conserved site|SecY domain superfamily|SecY/SEC61-alpha family GO:0015031|GO:0016020 G3DSA:1.10.3370.10|MF_01465|PF00344|PIRSF004557|PR00303|PS00755|PS00756|SSF103491|TIGR00967 IM40_02125 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000850|IPR006259|IPR007862|IPR027417|IPR036193 Adenylate kinase subfamily|Adenylate kinase, active site lid domain|Adenylate kinase, active site lid domain superfamily|Adenylate kinase/UMP-CMP kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004017|GO:0005524|GO:0006139|GO:0016776|GO:0019205 G3DSA:3.40.50.300|MF_00235|PF00406|PF05191|PR00094|SSF52540|SSF57774|TIGR01351 IM40_02130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001892|IPR010979|IPR018269|IPR019980|IPR027437 30s ribosomal protein S13, C-terminal|Ribosomal protein S13|Ribosomal protein S13, bacterial-type|Ribosomal protein S13, conserved site|Ribosomal protein S13-like, H2TH GO:0003676|GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.8.50|G3DSA:4.10.910.10|MF_01315|PF00416|PIRSF002134|PS00646|SSF46946|TIGR03631 IM40_02135 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001971|IPR018102|IPR019981|IPR036967 Ribosomal S11, conserved site|Ribosomal protein S11|Ribosomal protein S11 superfamily|Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.80|MF_01310|PF00411|PIRSF002131|PS00054|SSF53137|TIGR03632 IM40_02140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011260|IPR011262|IPR011263|IPR011773|IPR036603|IPR036643 DNA-directed RNA polymerase, RpoA/D/Rpb3-type|DNA-directed RNA polymerase, alpha subunit|DNA-directed RNA polymerase, insert domain|DNA-directed RNA polymerase, insert domain superfamily|RNA polymerase, RBP11-like subunit|RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351|GO:0046983 G3DSA:1.10.150.20|G3DSA:2.170.120.12|G3DSA:3.30.1360.10|MF_00059|PD001179|PF01000|PF01193|PF03118|SM00662|SSF47789|SSF55257|SSF56553|TIGR02027 IM40_02145 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000456|IPR036373 Ribosomal protein L17|Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.90.1030.10|MF_01368|PF01196|PS01167|SSF64263|TIGR00059 IM40_02150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001478|IPR001940|IPR009003|IPR011782|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 IM40_02155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR003959|IPR008921|IPR021886|IPR027417|IPR032423 AAA C-terminal domain|AAA+ ATPase domain|ATPase, AAA-type, core|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|MgsA AAA+ ATPase C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0006260 G3DSA:1.10.3710.10|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF00004|PF12002|PF16193|SM00382|SSF48019|SSF52540 IM40_02165 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003812|IPR036597 Fido domain|Fido-like domain superfamily G3DSA:1.10.3290.10|PF02661|SSF140931 IM40_02170 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004305|IPR016084 Haem oxygenase-like, multi-helical|Thiaminase-2/PQQC G3DSA:1.20.910.10|PF03070|SSF48613 IM40_02180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_02190 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 PF06412 IM40_02205 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053|IPR027417 MobA/MobL protein|P-loop containing nucleoside triphosphate hydrolase G3DSA:2.30.30.940|G3DSA:3.30.930.30|G3DSA:3.40.50.300|PF03389|PF13604|SSF52540 IM40_02245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012931 TraG-like, N-terminal PF07916 IM40_02250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 IM40_02255 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036249|IPR039555 F plasmid transfer operon protein|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF13728|SSF52833 IM40_02260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002145|IPR010985 Ribbon-helix-helix|Ribbon-helix-helix protein, CopG GO:0006355 PF01402|SSF47598 IM40_02265 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|SSF143011|TIGR02385 IM40_02270 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986 IM40_02275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014113|IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC|Type-F conjugative transfer system pilin assembly protein TrbC, subgroup PF09673|TIGR02742 IM40_02280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009649 TraU PF06834 IM40_02310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014117|IPR025955|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:1.10.8.730|G3DSA:3.40.50.300|PF11130|PF12846|SSF52540|TIGR02746 IM40_02325 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010563 Pilus assembly TraK PF06586 IM40_02330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309|TIGR02761 IM40_02335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 PF07178|TIGR02762 IM40_02360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 G3DSA:1.10.260.40|SSF47413 IM40_02365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006442|IPR036165 Type II toxin-antitoxin system, antitoxin Phd/YefM|YefM-like superfamily PF02604|SSF143120 IM40_02370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|SSF143011|TIGR02385 IM40_02375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002110|IPR020683|IPR036770 Ankyrin repeat|Ankyrin repeat-containing domain|Ankyrin repeat-containing domain superfamily GO:0005515 G3DSA:1.25.40.20|PF12796|SM00248|SSF48403 IM40_02380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|SSF48613 IM40_02385 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF13483|SSF56281 IM40_02390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025714|IPR029063 Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13847|SSF53335 IM40_02400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003347 JmjC domain G3DSA:2.60.120.1660|PF13621|SM00558|SSF51197 IM40_02405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007863|IPR011249|IPR011765 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal GO:0003824|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|SSF63411 IM40_02410 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000873|IPR001242|IPR006162|IPR009081|IPR010071|IPR020845|IPR023213|IPR025110|IPR036736 ACP-like superfamily|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Amino acid adenylation domain|Chloramphenicol acetyltransferase-like domain superfamily|Condensation domain|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain GO:0003824 G3DSA:1.10.1200.10|G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.30.559.30|G3DSA:3.40.50.12780|PF00501|PF00550|PF00668|PF13193|PS00012|PS00455|SSF47336|SSF52777|SSF56801|TIGR01733 IM40_02415 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000873|IPR001242|IPR010071|IPR020845|IPR023213|IPR025110|IPR036736 ACP-like superfamily|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Amino acid adenylation domain|Chloramphenicol acetyltransferase-like domain superfamily|Condensation domain GO:0003824 G3DSA:1.10.1200.10|G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.30.559.30|G3DSA:3.40.50.12780|PF00501|PF00668|PF13193|PS00455|SSF52777|SSF56801|TIGR01733 IM40_02420 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000873|IPR001242|IPR009081|IPR010071|IPR020845|IPR023213|IPR025110|IPR036736 ACP-like superfamily|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Amino acid adenylation domain|Chloramphenicol acetyltransferase-like domain superfamily|Condensation domain|Phosphopantetheine binding ACP domain GO:0003824 G3DSA:1.10.1200.10|G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.30.559.30|G3DSA:3.40.50.12780|PF00501|PF00550|PF00668|PF13193|PS00455|SSF47336|SSF52777|SSF56801|TIGR01733 IM40_02445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008278|IPR037143 4'-phosphopantetheinyl transferase domain|4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 G3DSA:3.90.470.20|PF01648|SSF56214 IM40_02450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001533|IPR036428 Pterin 4 alpha carbinolamine dehydratase|Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 G3DSA:3.30.1360.20|PF01329|SSF55248 IM40_02455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003744 Queuosine precursor transporter GO:1990397 MF_02088|PF02592|TIGR00697 IM40_02460 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR020531|IPR022565|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|Protein of unknown function DUF2608|Uncharacterised protein family, RP296 G3DSA:3.40.50.1000|PD317075|PF11019|SSF56784 IM40_02480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_02485 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_02500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 IM40_02505 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000873|IPR001242|IPR009081|IPR010071|IPR020845|IPR023213|IPR025110|IPR036736 ACP-like superfamily|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Amino acid adenylation domain|Chloramphenicol acetyltransferase-like domain superfamily|Condensation domain|Phosphopantetheine binding ACP domain GO:0003824 G3DSA:1.10.1200.10|G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.30.559.30|G3DSA:3.40.50.12780|PF00501|PF00550|PF00668|PF13193|PS00455|SSF47336|SSF52777|SSF56801|TIGR01733 IM40_02510 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.90.1200.10|PF01636|SSF56112 IM40_02515 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000223|IPR015927|IPR019757|IPR019758|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C|Peptidase S26A, signal peptidase I|Peptidase S26A, signal peptidase I, conserved site|Peptidase S26A, signal peptidase I, lysine active site GO:0006508|GO:0008236|GO:0016020|GO:0016021 G3DSA:2.10.109.10|G3DSA:2.170.230.10|PF00717|PR00727|PS00760|PS00761|SSF51306|TIGR02227 IM40_02520 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|PF14659|SSF56349 IM40_02530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 IM40_02555 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004305|IPR016084 Haem oxygenase-like, multi-helical|Thiaminase-2/PQQC G3DSA:1.20.910.10|PF03070|SSF48613 IM40_02575 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 G3DSA:1.10.260.40|SSF47413 IM40_02580 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000109|IPR005279|IPR036259 Dipeptide/tripeptide permease|MFS transporter superfamily|Proton-dependent oligopeptide transporter family GO:0015833|GO:0016020|GO:0022857|GO:0055085|GO:1904680 G3DSA:1.20.1250.20|PF00854|SSF103473|TIGR00924 IM40_02585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001278|IPR001412|IPR009080|IPR014729|IPR035684 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Arginine-tRNA ligase|Arginyl-tRNA synthetase, catalytic core domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0006418|GO:0006420 G3DSA:3.40.50.620|PF00750|PR01038|PS00178|SSF47323|SSF52374 IM40_02590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|SSF48613 IM40_02605 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002921|IPR029058 Alpha/Beta hydrolase fold|Fungal lipase-like domain GO:0006629 G3DSA:3.40.50.1820|PF01764|SSF53474 IM40_02610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_02615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_02635 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000792|IPR002182|IPR016032|IPR027417|IPR036388 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0043531 G3DSA:1.10.10.10|G3DSA:3.40.50.300|PF00196|PF00931|PR00364|SM00421|SSF46894|SSF52540 IM40_02640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13424|SM00028|SSF48452 IM40_02655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025668 Transposase DDE domain PF13612 IM40_02675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018727 Protein of unknown function DUF2267 G3DSA:1.10.490.110|PF10025 IM40_02680 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 IM40_02690 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002559|IPR008490 Transposase InsH, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF05598 IM40_02720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR026487 Sporadically distributed protein CHP04141 TIGR04141 IM40_02735 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_02740 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_02805 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003444|IPR020603|IPR037914|IPR038619 MraZ domain|MraZ superfamily|SpoVT-AbrB domain superfamily|Transcriptional regulator MraZ GO:0003700|GO:0006355 G3DSA:2.40.330.20|MF_01008|PD006745|PF02381|SSF89447 IM40_02810 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002903|IPR023397|IPR029063 Ribosomal RNA small subunit methyltransferase H|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 G3DSA:1.10.150.170|G3DSA:3.40.50.150|MF_01007|PF01795|PIRSF004486|SSF53335|SSF81799|TIGR00006 IM40_02825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004101|IPR005761|IPR013221|IPR035911|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily|MurE/MurF, N-terminal|UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0009058|GO:0016874|GO:0016881|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_00208|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01085 IM40_02830 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000713|IPR004101|IPR005863|IPR013221|IPR035911|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|MurE/MurF, N-terminal|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0009058|GO:0016874|GO:0047480|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_02019|PF01225|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01143 IM40_02835 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000715|IPR003524|IPR018480 Glycosyl transferase, family 4|Phospho-N-acetylmuramoyl-pentapeptide transferase|Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site GO:0008963|GO:0016020|GO:0016021 MF_00038|PF00953|PS01348|TIGR00445 IM40_02840 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004101|IPR005762|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily|UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0009058|GO:0016874|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00639|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01087 IM40_02845 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001182|IPR013437 Probable peptidoglycan glycosyltransferase FtsW|Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0009252|GO:0016021|GO:0051301 PF01098|TIGR02614 IM40_02850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004276|IPR006009|IPR007235 Glycosyl transferase, family 28, C-terminal|Glycosyltransferase family 28, N-terminal domain|N-acetylglucosaminyltransferase, MurG GO:0005975|GO:0016758|GO:0030259|GO:0050511 G3DSA:3.40.50.2000|MF_00033|PF03033|PF04101|SSF53756 IM40_02855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000713|IPR004101|IPR005758|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|UDP-N-acetylmuramate--L-alanine ligase GO:0005524|GO:0008763|GO:0009058|GO:0009252|GO:0016874 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00046|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01082 IM40_02860 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003170|IPR006094|IPR011601|IPR016167|IPR016169|IPR036318|IPR036635 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|UDP-N-acetylenolpyruvoylglucosamine reductase|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.90.78.10|MF_00037|PF01565|PF02873|SSF56176|SSF56194|TIGR00179 IM40_02865 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000291|IPR005905|IPR011095|IPR011127|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|D-alanine--D-alanine ligase|D-alanine--D-alanine ligase, C-terminal|D-alanine--D-alanine ligase, N-terminal domain|D-alanine--D-alanine ligase/VANA/B/C, conserved site|Pre-ATP-grasp domain superfamily GO:0005524|GO:0005737|GO:0008716 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00047|PF01820|PF07478|PIRSF039102|PS00844|SSF52440|SSF56059|TIGR01205 IM40_02870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005548|IPR013685|IPR026579 Cell division protein FtsQ|Cell division protein FtsQ/DivIB|POTRA domain, FtsQ-type GO:0090529 G3DSA:3.10.20.310|G3DSA:3.40.50.11690|MF_00911|PF03799|PF08478 IM40_02875 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003494|IPR020823 Cell division protein FtsA|SHS2 domain inserted in FtsA GO:0005515|GO:0051301 G3DSA:3.30.1490.110|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_02033|PF02491|PF14450|PIRSF003101|SM00842|SSF53067|TIGR01174 IM40_02880 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000158|IPR003008|IPR008280|IPR018316|IPR020805|IPR024757|IPR036525|IPR037103 Cell division protein FtsZ|Cell division protein FtsZ, C-terminal|Cell division protein FtsZ, conserved site|Tubulin/FtsZ, 2-layer sandwich domain|Tubulin/FtsZ, C-terminal|Tubulin/FtsZ, C-terminal domain superfamily|Tubulin/FtsZ, GTPase domain|Tubulin/FtsZ, GTPase domain superfamily GO:0003924|GO:0005525|GO:0005737 G3DSA:3.30.1330.20|G3DSA:3.40.50.1440|MF_00909|PF00091|PF12327|PR00423|PS01134|PS01135|SM00864|SM00865|SSF52490|SSF55307|TIGR00065 IM40_02885 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 IM40_02900 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001731|IPR013785|IPR030656 Aldolase-type TIM barrel|Delta-aminolevulinic acid dehydratase|Delta-aminolevulinic acid dehydratase, active site GO:0003824|GO:0004655|GO:0033014|GO:0046872 G3DSA:3.20.20.70|PF00490|PIRSF001415|PR00144|PS00169|SM01004|SSF51569 IM40_02915 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF00126|PF03466|SSF46785|SSF53850 IM40_02920 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004667|IPR036259 ADP/ATP carrier protein|MFS transporter superfamily GO:0005471|GO:0006862|GO:0016021 PF03219|SSF103473 IM40_02925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004846|IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily|Type II/III secretion system GO:0005515|GO:0009306 G3DSA:1.25.40.10|PF00263|SM00028|SSF48452 IM40_02930 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001980|IPR004821|IPR014729 Cytidyltransferase-like domain|Phosphopantetheine adenylyltransferase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004595|GO:0009058|GO:0015937 G3DSA:3.40.50.620|MF_00151|PF01467|PR01020|SSF52374|TIGR00125|TIGR01510 IM40_02940 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002205|IPR005743|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase, subunit A|DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain superfamily|Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_01897|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01063 IM40_02945 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000424|IPR011344|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein GO:0003697|GO:0006260 G3DSA:2.40.50.140|MF_00984|PF00436|SSF50249|TIGR00621 IM40_02955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_02970 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006427|IPR006944 Bacteriophage/Gene transfer agent portal protein|Phage portal protein, HK97 PF04860|TIGR01537 IM40_02975 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006433 Prohead protease PF04586|SSF50789|TIGR01543 IM40_02980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006442|IPR036165 Type II toxin-antitoxin system, antitoxin Phd/YefM|YefM-like superfamily G3DSA:3.40.1620.10|PF02604|SSF143120|TIGR01552 IM40_02985 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 IM40_03000 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018639 Domain of unknown function DUF2062 PF09835 IM40_03010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005019|IPR011257 DNA glycosylase|Methyladenine glycosylase GO:0003824|GO:0006281|GO:0006284|GO:0008725 G3DSA:1.10.340.30|PF03352|SSF48150 IM40_03015 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000362|IPR005677|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate hydratase, class II|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004333|GO:0006099|GO:0006106|GO:0016829|GO:0045239 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00743|PF00206|PF10415|PR00149|PS00163|SSF48557|TIGR00979 IM40_03020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR036047 F-box domain|F-box-like domain superfamily GO:0005515 G3DSA:1.20.1280.50|PF12937|SSF81383 IM40_03025 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016192|IPR016193|IPR028883 APOBEC/CMP deaminase, zinc-binding|Cytidine deaminase-like|tRNA-specific adenosine deaminase GO:0002100|GO:0003824|GO:0008251|GO:0008270|GO:0016787 G3DSA:3.40.140.10|MF_00972|PF14437|PS00903|SSF53927 IM40_03030 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 IM40_03035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003838|IPR011925|IPR025857 ABC transporter permease protein domain|Lipoprotein-releasing system transmembrane protein LolC/E|MacB-like periplasmic core domain GO:0016020|GO:0016021|GO:0042953|GO:0042954 PF02687|PF12704|TIGR02212 IM40_03040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002314|IPR002316|IPR004154|IPR004500|IPR023716|IPR036621 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Anticodon-binding domain superfamily|Proline-tRNA ligase, class IIa|Proline-tRNA ligase, class IIa, type 2|Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0000166|GO:0004812|GO:0004827|GO:0005524|GO:0005737|GO:0006418|GO:0006433 G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_01570|PF00587|PF03129|PR01046|SSF52954|SSF55681|TIGR00409 IM40_03045 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003591|IPR032675 Leucine-rich repeat domain superfamily|Leucine-rich repeat, typical subtype G3DSA:3.80.10.10|SM00369|SSF52058 IM40_03050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004921|IPR035421 Terminase large subunit, T4likevirus-type|Terminase, large subunit gp17-like G3DSA:3.40.50.300|PF03237|PF17289 IM40_03055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007474|IPR023065|IPR036767 ApaG domain|ApaG domain superfamily|Uncharacterised protein family ApaG G3DSA:2.60.40.1470|MF_00791|PF04379|SSF110069 IM40_03060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006683|IPR006684|IPR029069 Acyl-CoA thioester hydrolase YbgC/YbaW family|HotDog domain superfamily|Thioesterase domain GO:0016787 G3DSA:3.10.129.10|PF03061|PIRSF003230|SSF54637|TIGR00051 IM40_03065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002898|IPR014163 MotA/TolQ/ExbB proton channel|Tol-Pal system, TolQ GO:0016021|GO:0043213 MF_02202|PF01618|TIGR02796 IM40_03075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic G3DSA:3.30.1150.10 IM40_03095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007195|IPR011042|IPR011659|IPR014167|IPR036752 Six-bladed beta-propeller, TolB-like|Tol-Pal system protein TolB|TolB, N-terminal|TolB, N-terminal domain superfamily|WD40-like Beta Propeller GO:0015031|GO:0017038|GO:0042597 G3DSA:2.120.10.30|G3DSA:3.40.50.10070|MF_00671|PF04052|PF07676|SSF52964|SSF69304|TIGR02800 IM40_03100 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006664|IPR006665|IPR014169|IPR036737|IPR039001 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial|Peptidoglycan-associated lipoprotein|Peptidoglycan-associated lipoprotein, C-terminal GO:0009279|GO:0016021|GO:0051301 G3DSA:3.30.1330.60|MF_02204|PF00691|PR01021|SSF103088|TIGR02802 IM40_03105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001288|IPR019813|IPR019814|IPR019815|IPR036787|IPR036788 Translation initiation factor 3|Translation initiation factor 3 (IF-3), C-terminal domain superfamily|Translation initiation factor 3 (IF-3), N-terminal domain superfamily|Translation initiation factor 3, C-terminal|Translation initiation factor 3, N-terminal|Translation initiation factor 3, conserved site GO:0003743|GO:0006413 G3DSA:3.10.20.80|G3DSA:3.30.110.10|MF_00080|PF00707|PF05198|PS00938|SSF54364|SSF55200|TIGR00168 IM40_03110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002314|IPR002320|IPR004095|IPR004154|IPR012675|IPR012676|IPR012947|IPR018163|IPR036621 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Anticodon-binding domain superfamily|Beta-grasp domain superfamily|TGS|TGS-like|Threonine-tRNA ligase, class IIa|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166|GO:0004812|GO:0004829|GO:0005524|GO:0005737|GO:0006418|GO:0006435|GO:0043039 G3DSA:3.10.20.30|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|G3DSA:3.40.50.800|MF_00184|PF00587|PF02824|PF03129|PF07973|PR01047|SM00863|SSF52954|SSF55186|SSF55681|SSF81271|TIGR00418 IM40_03120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007487|IPR028082 ABC transporter, substrate-binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF04392|SSF53822 IM40_03130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000652|IPR013785|IPR020861|IPR022896|IPR035990 Aldolase-type TIM barrel|Triosephosphate isomerase|Triosephosphate isomerase superfamily|Triosephosphate isomerase, active site|Triosephosphate isomerase, bacterial/eukaryotic GO:0003824|GO:0004807|GO:0006096 G3DSA:3.20.20.70|MF_00147_B|PF00121|PS00171|SSF51351|TIGR00419 IM40_03145 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004468|IPR017456|IPR017926|IPR027417|IPR029062 CTP synthase|CTP synthase, N-terminal|Class I glutamine amidotransferase-like|Glutamine amidotransferase|P-loop containing nucleoside triphosphate hydrolase GO:0003883|GO:0006221 G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_01227|PF00117|PF06418|SSF52317|SSF52540|TIGR00337 IM40_03150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006218|IPR006269|IPR013785 3-deoxy-8-phosphooctulonate synthase|Aldolase-type TIM barrel|DAHP synthetase I/KDSA GO:0003824|GO:0005737|GO:0008676|GO:0009058 G3DSA:3.20.20.70|MF_00056|PF00793|SSF51569|TIGR01362 IM40_03180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000873|IPR011904|IPR020845|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetate-CoA ligase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824|GO:0003987|GO:0016208|GO:0019427 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|MF_01123|PF00501|PF13193|PF16177|PS00455|SSF56801|TIGR02188 IM40_03185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000529|IPR014717|IPR020814|IPR035980 Ribosomal protein S6|Ribosomal protein S6 superfamily|Ribosomal protein S6, plastid/chloroplast|Translation elongation factor EF1B/ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.30.70.60|MF_00360|PF01250|SSF54995|TIGR00166 IM40_03190 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001648|IPR018275|IPR036870 Ribosomal protein S18|Ribosomal protein S18 superfamily|Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.640.10|MF_00270|PD002239|PF01084|PR00974|PS00057|SSF46911|TIGR00165 IM40_03195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018710 Protein of unknown function DUF2232 PF09991 IM40_03210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR007692|IPR007693|IPR007694|IPR016136|IPR027417|IPR036185 AAA+ ATPase domain|DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB type|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|DNA helicase, DnaB-like, N-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003678|GO:0005524|GO:0006260 G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|SM00382|SSF48024|SSF52540|TIGR00665 IM40_03220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|SSF56281 IM40_03225 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001279 Metallo-beta-lactamase PF00753 IM40_03230 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_03235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup PF00477 IM40_03240 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021335 Protein of unknown function DUF2948 PF11164 IM40_03250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011962|IPR029054|IPR036157 dCTP deaminase|dUTPase-like|dUTPase-like superfamily GO:0006229|GO:0008829 G3DSA:2.70.40.10|MF_00146|PF00692|SSF51283|TIGR02274 IM40_03270 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007780|IPR028971|IPR036291 NAD(P)-binding domain superfamily|NAD-glutamate dehydrogenase|NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 PF05088|PIRSF036761|SSF51735|SSF53223 IM40_03275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005946|IPR029057|IPR029099 Phosphoribosyltransferase-like|Ribose-phosphate pyrophosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain GO:0000287|GO:0004749|GO:0009165 G3DSA:3.40.50.2020|PF13793|PF14572|SM01400|SSF53271|TIGR01251 IM40_03280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF48452 IM40_03290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003754|IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase|Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 G3DSA:3.40.50.10090|PF02602|SSF69618 IM40_03295 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002201 Glycosyl transferase, family 9 GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756 IM40_03300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000835|IPR023187|IPR036388|IPR036390 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF13463|PS01117|SM00347|SSF46785 IM40_03305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 PF03553 IM40_03315 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009935 Protein of unknown function DUF1467 PF07330 IM40_03320 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003796|IPR005144 ATP-cone domain|Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 MF_00440|PF03477|TIGR00244 IM40_03325 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001085|IPR015421|IPR015422|IPR015424|IPR019798|IPR039429 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase, pyridoxal phosphate binding site|Serine hydroxymethyltransferase-like domain GO:0003824|GO:0004372|GO:0019264|GO:0030170|GO:0035999 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|PS00096|SSF53383 IM40_03330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007481|IPR036760 SspB-like superfamily|Stringent starvation protein B G3DSA:2.30.30.220|PF04386|SSF101738 IM40_03335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 G3DSA:1.10.1760.20|PF02632|PIRSF016661 IM40_03340 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009702 Protein of unknown function DUF1284 PF06935 IM40_03345 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000086|IPR015797|IPR020084|IPR020476 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PS00893|SSF55811 IM40_03350 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001787|IPR028909|IPR036164 L21-like superfamily|Ribosomal protein L21|Ribosomal protein L21-like GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_01363|PF00829|SSF141091|TIGR00061 IM40_03355 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001684|IPR018261 Ribosomal protein L27|Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.1030|MF_00539|PD003114|PF01016|PR00063|PS00831|SSF110324|TIGR00062 IM40_03365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004394 Protein Iojap/ribosomal silencing factor RsfS G3DSA:3.30.460.10|MF_01477|PF02410|SSF81301|TIGR00090 IM40_03390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008332|IPR014048|IPR023546|IPR036217|IPR036388|IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA--protein-cysteine methyltransferase|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-like DNA-binding domain superfamily GO:0003824|GO:0003908|GO:0006281 G3DSA:1.10.10.10|G3DSA:3.30.160.70|MF_00772|PF01035|PF02870|SSF46767|SSF53155|TIGR00589 IM40_03395 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000086|IPR015797|IPR020084|IPR020476|IPR022927 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|RNA pyrophosphohydrolase RppH GO:0016787 G3DSA:3.90.79.10|MF_00298|PF00293|PR00502|PS00893|SSF55811 IM40_03400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001478|IPR004447|IPR005151|IPR029045|IPR036034 C-terminal-processing peptidase S41A|ClpP/crotonase-like domain superfamily|PDZ domain|PDZ superfamily|Tail specific protease GO:0005515|GO:0006508|GO:0008236 G3DSA:2.30.42.10|G3DSA:3.30.750.44|G3DSA:3.90.226.10|PF03572|PF13180|SM00228|SM00245|SSF50156|SSF52096|TIGR00225 IM40_03405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005995|IPR006124|IPR011258|IPR017849|IPR017850|IPR036646 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|BPG-independent PGAM, N-terminal|BPG-independent phosphoglycerate mutase, domain B superfamily|Metalloenzyme|Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0003824|GO:0004619|GO:0005737|GO:0006007|GO:0030145|GO:0046872 G3DSA:3.40.1450.10|G3DSA:3.40.720.10|MF_01038|PF01676|PF06415|PIRSF001492|SSF53649|SSF64158|TIGR01307 IM40_03410 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006027|IPR011605|IPR035926 NusB antitermination factor|NusB-like superfamily|NusB/RsmB/TIM44 GO:0003723|GO:0006353|GO:0006355 G3DSA:1.10.940.10|MF_00073|PF01029|SSF48013|TIGR01951 IM40_03415 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002177|IPR008331|IPR009078|IPR012347|IPR023188 DNA-binding protein Dps|DNA-binding protein Dps, conserved site|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006879|GO:0008199|GO:0016722|GO:0055114 G3DSA:1.20.1260.10|PF00210|PIRSF005900|PR01346|PS00819|SSF47240 IM40_03425 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000866|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|PIRSF000239|SSF52833 IM40_03430 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 IM40_03435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001247|IPR003029|IPR004087|IPR004088|IPR012162|IPR012340|IPR015847|IPR015848|IPR020568|IPR022967|IPR027408|IPR036345|IPR036612 Exoribonuclease, PH domain 2 superfamily|Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|K Homology domain|K Homology domain, type 1|K Homology domain, type 1 superfamily|Nucleic acid-binding, OB-fold|PNPase/RNase PH domain superfamily|Polyribonucleotide nucleotidyltransferase|Polyribonucleotide nucleotidyltransferase, RNA-binding domain|RNA-binding domain, S1|Ribosomal protein S5 domain 2-type fold|S1 domain GO:0003676|GO:0003723|GO:0004654|GO:0006396|GO:0006402 G3DSA:2.40.50.140|G3DSA:3.30.1370.10|G3DSA:3.30.230.70|MF_01595|PF00013|PF00575|PF01138|PF03725|PF03726|PIRSF005499|SM00316|SM00322|SSF50249|SSF54211|SSF54791|SSF55666|TIGR03591 IM40_03440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000589|IPR005290|IPR009068 Ribosomal protein S15|Ribosomal protein S15, bacterial-type|S15/NS1, RNA-binding GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.10|MF_01343_B|PD157043|PF00312|PS00362|SM01387|SSF47060|TIGR00952 IM40_03445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002501|IPR014780|IPR020103 Pseudouridine synthase II, N-terminal|Pseudouridine synthase, catalytic domain superfamily|tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0006396|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|MF_01080|PF01509|SSF55120|TIGR00431 IM40_03455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012495 TadE-like PF07811 IM40_03465 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR028087|IPR036465 Putative Flp pilus-assembly TadG-like, N-terminal|von Willebrand factor A-like domain superfamily PF13400|SSF53300 IM40_03470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13432|SM00028|SSF48452 IM40_03480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR017592|IPR031571 Flp pilus assembly protein RcpC/CpaB domain|Pilus assembly, Flp-type CpaB PF16976|TIGR03177 IM40_03490 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019027 Pilus biogenesis CpaD-related PF09476 IM40_03495 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001789|IPR011006|IPR025669|IPR027417 AAA domain|CheY-like superfamily|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF13614|SSF52172|SSF52540 IM40_03505 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018076 Type II secretion system F domain G3DSA:1.20.81.30|PF00482 IM40_03515 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007922 Protein of unknown function DUF721/UPF0232 PF05258 IM40_03525 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR013986|IPR014017|IPR027417|IPR034739 DExx box DNA helicase domain superfamily|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|PF00580|PF13361|SSF52540 IM40_03540 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 IM40_03550 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025494 Protein of unknown function DUF4385 PF14328 IM40_03585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000014|IPR001610|IPR003594|IPR004358|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAC motif|PAS domain|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF02518|PF13426|PR00344|SM00086|SM00091|SM00387|SSF47384|SSF55785|SSF55874|TIGR00229 IM40_03590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025889 General stress protein 17M-like domain PF11181 IM40_03605 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000462|IPR004570 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016020|GO:0016021|GO:0016780 G3DSA:1.20.120.1760|PF01066|PIRSF000847|PS00379|TIGR00560 IM40_03610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000305|IPR001162|IPR001943|IPR004791|IPR010994|IPR035901|IPR036876|IPR038476 GIY-YIG endonuclease|GIY-YIG endonuclease superfamily|RuvA domain 2-like|UVR domain|UVR domain superfamily|UvrABC system, subunit C|UvrC family homology region|UvrC homology region 2 superfamily GO:0005515|GO:0006289|GO:0009380|GO:0009381 G3DSA:1.10.150.20|G3DSA:3.30.420.340|G3DSA:3.40.1440.10|MF_00203|PF01541|PF02151|PF08459|PF12826|SM00465|SSF46600|SSF47781|SSF82771|TIGR00194 IM40_03625 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103|IPR036986 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 IM40_03630 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000943|IPR007627|IPR007630|IPR013324|IPR013325|IPR014284 RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 G3DSA:1.20.120.1810|G3DSA:1.20.140.160|PF04542|PF04545|PR00046|PS00716|SSF88659|SSF88946|TIGR02937 IM40_03635 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003141|IPR004013|IPR004805|IPR011708|IPR016195|IPR029460 Bacterial DNA polymerase III, alpha subunit|DNA polymerase III, alpha subunit|DNA polymerase, helix-hairpin-helix motif|PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003824|GO:0006260|GO:0008408 G3DSA:1.10.10.1600|G3DSA:3.20.20.140|PF02811|PF07733|PF14579|SM00481|SSF89550|TIGR00594 IM40_03640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002502|IPR036365|IPR036366|IPR036505 N-acetylmuramoyl-L-alanine amidase domain|N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily|PGBD superfamily|PGBD-like superfamily GO:0008745|GO:0009253 G3DSA:1.10.101.10|G3DSA:3.40.80.10|PF01510|SM00644|SSF47090|SSF55846 IM40_03645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018762|IPR036890 Histidine kinase/HSP90-like ATPase superfamily|Histidine phosphotransferase ChpT, C-terminal G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF10090 IM40_03650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005122|IPR036895 Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily G3DSA:3.40.470.10|PF03167|SM00986|SM00987|SSF52141 IM40_03655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000537|IPR006370|IPR030470 4-hydroxybenzoate polyprenyltransferase-like|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0004659|GO:0016021|GO:0016765 G3DSA:1.10.357.140|G3DSA:1.20.120.1780|MF_01635|PF01040|PS00943|TIGR01474 IM40_03665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel G3DSA:2.40.160.20|SSF56925 IM40_03670 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001357|IPR001679|IPR004149|IPR004150|IPR010994|IPR012340|IPR013839|IPR013840|IPR018239|IPR033136|IPR036420 BRCT domain|BRCT domain superfamily|NAD-dependent DNA ligase|NAD-dependent DNA ligase, N-terminal|NAD-dependent DNA ligase, OB-fold|NAD-dependent DNA ligase, active site|NAD-dependent DNA ligase, adenylation|NAD-dependent DNA ligase, conserved site|Nucleic acid-binding, OB-fold|RuvA domain 2-like|Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 G3DSA:1.10.150.20|G3DSA:1.10.287.610|G3DSA:2.20.70.80|G3DSA:2.40.50.140|G3DSA:3.30.470.90|G3DSA:3.40.50.10190|MF_01588|PF00533|PF01653|PF03119|PF03120|PF12826|PIRSF001604|PS01055|PS01056|SM00292|SM00532|SSF47781|SSF50249|SSF52113|SSF56091|TIGR00575 IM40_03675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003395|IPR004604|IPR027417 DNA recombination/repair protein RecN|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal GO:0005524|GO:0006281|GO:0006310 G3DSA:3.40.50.300|PF02463|PIRSF003128|SSF52540|TIGR00634 IM40_03680 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990|IPR017689|IPR039565 Outer membrane lipoprotein BamD-like|Outer membrane protein assembly factor BamD|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|MF_00922|PF13525|SSF48452|TIGR03302 IM40_03685 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004463|IPR011334|IPR015870|IPR020568 Ribosomal protein S5 domain 2-type fold|UDP-3-O-acyl N-acetylglucosamine deacetylase|UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal|UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 G3DSA:3.30.1700.10|G3DSA:3.30.230.20|MF_00388|PF03331|SSF54211|TIGR00325 IM40_03700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000504|IPR012677|IPR035979 Nucleotide-binding alpha-beta plait domain superfamily|RNA recognition motif domain|RNA-binding domain superfamily GO:0003676 G3DSA:3.30.70.330|PF00076|SM00360|SSF54928 IM40_03710 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007921|IPR038765 CHAP domain|Papain-like cysteine peptidase superfamily G3DSA:3.90.1720.10|PF05257|SSF54001 IM40_03725 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019291 Host attachment protein PF10116 IM40_03740 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007211 Protein of unknown function DUF378 PF04070 IM40_03750 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019626 Stress-induced protein, KGG, repeat PF10685 IM40_03775 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_03780 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032675 Leucine-rich repeat domain superfamily G3DSA:3.80.10.10|SSF52047 IM40_03855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|TIGR02385 IM40_03860 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic SSF55486 IM40_03870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005546|IPR011042|IPR011050|IPR013425|IPR036709 Autotransporter beta-domain|Autotransporter beta-domain superfamily|Autotransporter-associated beta strand repeat|Pectin lyase fold/virulence factor|Six-bladed beta-propeller, TolB-like G3DSA:2.120.10.30|G3DSA:2.40.128.130|PF03797|PF12951|SM00869|SSF103515|SSF51126|SSF63825|TIGR02601 IM40_03875 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_03890 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_03900 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005119 LysR, substrate-binding G3DSA:3.40.190.290|PF03466|SSF53850 IM40_03910 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000719|IPR008271|IPR011009|IPR017441 Protein kinase domain|Protein kinase, ATP binding site|Protein kinase-like domain superfamily|Serine/threonine-protein kinase, active site GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|PF00069|PS00107|PS00108|SM00220|SSF56112 IM40_03920 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000073|IPR002410|IPR005944|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Peptidase S33|Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508|GO:0008233 G3DSA:3.40.50.1820|PF00561|PIRSF006431|PR00111|PR00793|SSF53474|TIGR01249 IM40_03925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000755|IPR009045 D-alanyl-D-alanine dipeptidase|Hedgehog signalling/DD-peptidase zinc-binding domain superfamily GO:0005618|GO:0006508|GO:0008237|GO:0016805 G3DSA:3.30.1380.10|MF_01924|PF01427|PIRSF026671|SSF55166 IM40_03945 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032675 Leucine-rich repeat domain superfamily G3DSA:3.80.10.10|SSF52047 IM40_03950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002656 Acyltransferase 3 GO:0016747 PF01757 IM40_03955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002656 Acyltransferase 3 GO:0016747 PF01757 IM40_03960 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF12706|SSF56281 IM40_03990 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006915 Domain of unknown function DUF637, haemagglutinin putative PF04830 IM40_04025 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011250|IPR027385 Outer membrane protein beta-barrel|Outer membrane protein/outer membrane enzyme PagP, beta-barrel G3DSA:2.40.160.20|PF13505|SSF56925 IM40_04030 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000924|IPR001412|IPR004527|IPR008925|IPR014729|IPR020058|IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2|Aminoacyl-tRNA synthetase, class I, conserved site|Glutamate-tRNA ligase, bacterial/mitochondrial|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000049|GO:0000166|GO:0004812|GO:0004818|GO:0005524|GO:0005737|GO:0006418|GO:0006424|GO:0043039 G3DSA:1.10.10.350|G3DSA:3.40.50.620|MF_00022|PF00749|PR00987|PS00178|SSF48163|SSF52374|TIGR00464 IM40_04035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009080|IPR014729|IPR015273|IPR015803|IPR024909|IPR032678 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Cysteine-tRNA ligase|Cysteinyl-tRNA synthetase, class Ia, DALR|Cysteinyl-tRNA synthetase/mycothiol ligase|Rossmann-like alpha/beta/alpha sandwich fold|tRNA synthetases class I, catalytic domain GO:0000166|GO:0004812|GO:0004817|GO:0005524|GO:0005737|GO:0006418|GO:0006423 G3DSA:1.20.120.640|G3DSA:3.40.50.620|MF_00041|PF01406|PF09190|PR00983|SM00840|SSF47323|SSF52374|TIGR00435 IM40_04045 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000623|IPR027417|IPR031322 P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase/Threonine synthase-like 1|Shikimate kinase/gluconokinase G3DSA:3.40.50.300|MF_00109|PF01202|PR01100|SSF52540 IM40_04055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR023009 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01808|PF00589|PF02899|SSF56349 IM40_04060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001095|IPR029045 Acetyl-CoA carboxylase, alpha subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_00823|PF03255|PR01069|SSF52096|TIGR00513 IM40_04070 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001991|IPR036458 Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 G3DSA:1.10.3860.10|PF00375|SSF118215 IM40_04075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005771|IPR005835|IPR029044 Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011|GO:0009058|GO:0016779 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01099 IM40_04080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR017476|IPR028357|IPR036220|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|UDP-glucose 6-dehydrogenase, bacterial type|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0003979|GO:0016616|GO:0051287|GO:0055114 G3DSA:1.20.5.100|G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500134|PR00945|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 IM40_04100 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005145|IPR006070|IPR010923|IPR017945|IPR038385 DHBP synthase RibB-like alpha/beta domain superfamily|Putative GTP-binding controlling metal-binding domain|Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily|YrdC-like domain|tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 GO:0003725 G3DSA:3.40.50.11030|G3DSA:3.90.870.10|PF01300|PF03481|PIRSF004930|SSF55821|TIGR00057 IM40_04110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001653|IPR018510 Diaminopimelate epimerase, DapF|Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 G3DSA:3.10.310.10|MF_00197|PF01678|PS01326|SSF54506|TIGR00652 IM40_04115 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005839|IPR006467|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404|IPR038135 Elp3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, N-terminal domain superfamily|Methylthiotransferase, conserved site|MiaB-like tRNA modifying enzyme|Radical SAM|Radical SAM, alpha/beta horseshoe GO:0003824|GO:0006400|GO:0016740|GO:0051536|GO:0051539 G3DSA:3.40.50.12160|G3DSA:3.80.30.20|PF00919|PF04055|PS01278|SM00729|SSF102114|TIGR00089|TIGR01579 IM40_04120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000897|IPR003593|IPR004390|IPR013822|IPR027417|IPR036225 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|SRP/SRP receptor, N-terminal|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, helical bundle|Signal-recognition particle receptor FtsY GO:0005525|GO:0006614 G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00920|PF00448|PF02881|SM00382|SM00962|SM00963|SSF47364|SSF52540|TIGR00064 IM40_04125 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000962|IPR012784|IPR020458|IPR037187 DksA, N-terminal domain superfamily|RNA polymerase-binding transcription factor DksA|Zinc finger, DksA/TraR C4-type|Zinc finger, DksA/TraR C4-type conserved site GO:0008270 G3DSA:1.20.120.910|MF_00926|PF01258|PS01102|SSF109635|SSF57716|TIGR02420 IM40_04130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003669|IPR036098 Thymidylate synthase ThyX|Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 G3DSA:3.30.1360.170|MF_01408|PF02511|SSF69796|TIGR02170 IM40_04150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006015|IPR006016 Universal stress protein A|UspA G3DSA:3.40.50.12370|PF00582|PR01438|SSF52402 IM40_04165 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR022278 Aminotransferase class V domain|Phosphoserine aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004648|GO:0006564 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PIRSF000525|SSF53383 IM40_04180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004401|IPR036894 Nucleoid-associated protein YbaB-like domain superfamily|Nucleoid-associated protein YbaB/EbfC family G3DSA:3.30.1310.10|MF_00274|PF02575|PIRSF004555|SSF82607|TIGR00103 IM40_04185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000093|IPR006171|IPR023627|IPR023628 DNA recombination protein RecR|Recombination protein RecR|Recombination protein RecR, C4-type zinc finger|TOPRIM domain GO:0003677|GO:0006281|GO:0006310 G3DSA:1.10.8.420|G3DSA:3.40.1360.10|MF_00017|PF02132|PF13662|SM00493|SSF111304|TIGR00615 IM40_04190 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR005685|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily|Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729|TIGR00988 IM40_04195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001267|IPR020633|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Thymidine kinase|Thymidine kinase, conserved site GO:0004797|GO:0005524 G3DSA:3.30.60.20|G3DSA:3.40.50.300|MF_00124|PF00265|PIRSF035805|PS00603|SSF52540|SSF57716 IM40_04200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025714|IPR029063 Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13847|SSF53335 IM40_04210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006700|IPR015947|IPR029026|IPR029028 Alpha/beta knot methyltransferases|PUA-like superfamily|Ribosomal RNA small subunit methyltransferase E|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0006364|GO:0008168 G3DSA:2.40.240.20|G3DSA:3.40.1280.10|PF04452|PIRSF015601|SSF75217|SSF88697|TIGR00046 IM40_04215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006685|IPR010920|IPR011014|IPR011066|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|SSF50182|SSF82689|SSF82861 IM40_04220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003445|IPR004772 Cation transporter|TrkH potassium transport family GO:0006812|GO:0008324|GO:0015379|GO:0016021|GO:0055085|GO:0071805 PF02386|PIRSF006247 IM40_04235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.90.1200.10|PF01636|SSF56112 IM40_04250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000123|IPR000477|IPR013597|IPR030931 Group II intron reverse transcriptase/maturase|Group II intron, maturase-specific|RNA-directed DNA polymerase (reverse transcriptase), msDNA|Reverse transcriptase domain GO:0003723|GO:0003964|GO:0006278 G3DSA:3.30.70.270|PF00078|PF08388|PR00866|SSF56672|TIGR04416 IM40_04265 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006685|IPR010920|IPR011014|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|PF00924|SSF50182|SSF82861 IM40_04275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001911|IPR038380 Ribosomal protein S21|Ribosomal protein S21 superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:1.20.5.1150|MF_00358|PD005521|PF01165|PR00976|TIGR00030 IM40_04280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006424|IPR020828|IPR020829|IPR020830|IPR020831|IPR036291 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde-3-phosphate dehydrogenase, type I|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain superfamily GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00044|PF02800|PIRSF000149|PR00078|PS00071|SM00846|SSF51735|SSF55347|TIGR01534 IM40_04285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005474|IPR005475|IPR005478|IPR009014|IPR020826|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase binding site|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0004802 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|PS00801|PS00802|SM00861|SSF52518|SSF52922|TIGR00232 IM40_04290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000445|IPR003265|IPR004036|IPR005760|IPR011257|IPR015797|IPR023170|IPR029119 A/G-specific adenine glycosylase MutY|DNA glycosylase|Endonuclease III-like, conserved site-2|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|MutY, C-terminal|NUDIX hydrolase-like domain superfamily GO:0003677|GO:0003824|GO:0006281|GO:0006284|GO:0016787|GO:0019104 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.90.79.10|PF00633|PF00730|PF14815|PS01155|SM00478|SSF48150|SSF55811|TIGR01084 IM40_04300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000438|IPR029045|IPR034733 Acetyl-CoA carboxylase|Acetyl-CoA carboxylase carboxyl transferase, beta subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_01395|PF01039|PR01070|SSF52096|TIGR00515 IM40_04305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001543|IPR001689|IPR028976|IPR036429 CheC-like superfamily|Flagellar motor switch protein FliM|SpoA-like superfamily|Surface presentation of antigen (SpoA) GO:0003774|GO:0009425|GO:0071973 G3DSA:3.40.1550.10|PF01052|PF02154|PR00955|SSF101801 IM40_04315 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002810 NfeD-like, C-terminal domain PF01957 IM40_04320 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001107|IPR001972|IPR018080|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|Band 7/stomatin-like, conserved site|Stomatin family GO:0016020 G3DSA:3.30.479.30|PF01145|PR00721|PS01270|SM00244|SSF117892 IM40_04325 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002477|IPR005490|IPR036365|IPR038063 L,D-transpeptidase catalytic domain|L,D-transpeptidase catalytic domain-like|PGBD-like superfamily|Peptidoglycan binding-like GO:0016740 G3DSA:2.40.440.10|PF01471|PF03734|SSF141523|SSF47090 IM40_04335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001920|IPR015942 Asp/Glu racemase|Asp/Glu/hydantoin racemase GO:0006807|GO:0016855|GO:0036361 G3DSA:3.40.50.1860|PF01177|SSF53681 IM40_04345 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001054|IPR029151|IPR029787|IPR033479 Adenylyl cyclase class-3/4/guanylyl cyclase|Double Cache domain 1|Nucleotide cyclase|Periplasmic sensor-like domain superfamily GO:0009190|GO:0016849|GO:0035556 G3DSA:1.20.1480.50|G3DSA:3.30.450.20|G3DSA:3.30.70.1230|PF00211|PF02743|SM00044|SSF103190|SSF55073 IM40_04350 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001991|IPR036458 Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 G3DSA:1.10.3860.10|PF00375|PR00173|SSF118215 IM40_04355 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_04360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR015223|IPR027417 ATPase MipZ|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF09140|SSF52540 IM40_04365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 IM40_04370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 IM40_04375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR005893|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Spermidine/putrescine ABC transporter, ATP-binding subunit|Transport-associated OB, type 2 GO:0005524|GO:0015417|GO:0015846|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540|TIGR01187 IM40_04380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|PR01036|SSF103473 IM40_04385 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 IM40_04390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000788|IPR013344|IPR013678|IPR029072 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase, adenosylcobalamin-dependent|YebC-like GO:0000166|GO:0004748|GO:0006260|GO:0031419|GO:0050897|GO:0055114 G3DSA:3.20.70.20|PF02867|PF08471|PR01183|SSF51998|SSF75625|TIGR02504 IM40_04405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003329|IPR004528|IPR029044 3-deoxy-D-manno-octulosonate cytidylyltransferase|Acylneuraminate cytidylyltransferase|Nucleotide-diphospho-sugar transferases GO:0005737|GO:0008690 G3DSA:3.90.550.10|PF02348|SSF53448|TIGR00466 IM40_04410 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005227|IPR006641|IPR012337|IPR037027 Putative pre-16S rRNA nuclease|Ribonuclease H-like superfamily|YqgF/RNase H-like domain|YqgF/RNase H-like domain superfamily GO:0006139|GO:0006364 G3DSA:3.30.420.140|MF_00651|PF03652|SM00732|SSF53098|TIGR00250 IM40_04415 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003746|IPR036591 Protein of unknown function DUF167|YggU-like superfamily G3DSA:3.30.1200.10|MF_00634|PF02594|SM01152|SSF69786 IM40_04430 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001626|IPR037294 ABC transporter, BtuC-like|ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 PF00950|SSF81345 IM40_04435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 IM40_04440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 PF00953 IM40_04450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid PF09538 IM40_04455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003136|IPR011994|IPR027417 Cytidylate kinase|Cytidylate kinase domain|P-loop containing nucleoside triphosphate hydrolase GO:0004127|GO:0005524|GO:0006139 G3DSA:3.40.50.300|MF_00238|PF02224|SSF52540|TIGR00017 IM40_04470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000352|IPR004374|IPR005139 Peptide chain release factor|Peptide chain release factor 2|Peptide chain release factor class I/class II GO:0003747|GO:0005737|GO:0006415|GO:0016149 G3DSA:3.30.160.20|G3DSA:3.30.70.1660|MF_00094|PF00472|PF03462|PS00745|SM00937|SSF75620|TIGR00020 IM40_04525 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001441|IPR018520|IPR036424 Decaprenyl diphosphate synthase-like|Decaprenyl diphosphate synthase-like superfamily|Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 G3DSA:3.40.1180.10|MF_01139|PF01255|PS01066|SSF64005|TIGR00055 IM40_04530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002661|IPR023584|IPR036191 RRF superfamily|Ribosome recycling factor|Ribosome recycling factor domain GO:0006412 G3DSA:1.10.132.20|G3DSA:3.30.1360.40|MF_00040|PF01765|SSF55194|TIGR00496 IM40_04540 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001816|IPR009060|IPR014039|IPR018101|IPR036402 Elongation factor Ts, dimerisation domain superfamily|Translation elongation factor EFTs/EF1B|Translation elongation factor EFTs/EF1B, dimerisation|Translation elongation factor Ts, conserved site|UBA-like superfamily GO:0003746|GO:0005515|GO:0005622|GO:0006414 G3DSA:1.10.286.20|G3DSA:1.10.8.10|G3DSA:3.30.479.20|MF_00050|PF00889|PS01126|PS01127|SSF46934|SSF54713|TIGR00116 IM40_04545 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001865|IPR005706|IPR018130|IPR023591 Ribosomal protein S2|Ribosomal protein S2, bacteria/mitochondria/plastid|Ribosomal protein S2, conserved site|Ribosomal protein S2, flavodoxin-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:1.10.287.610|MF_00291_B|PF00318|PR00395|PS00962|PS00963|SSF52313|TIGR01011 IM40_04555 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001638|IPR005115 Solute-binding protein family 3/N-terminal domain of MltF|Uncharacterised domain UPF0126 G3DSA:3.40.190.10|PF00497|PF03458|SSF53850 IM40_04565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001915|IPR011990 Peptidase M48|Tetratricopeptide-like helical domain superfamily GO:0004222|GO:0005515|GO:0006508 G3DSA:1.25.40.10|G3DSA:3.30.2010.10|PF01435|PF13432|SSF48452 IM40_04570 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012336|IPR036249 Thioredoxin-like fold|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF13462|SSF52833 IM40_04575 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000845|IPR011271|IPR018953|IPR035994|IPR037109 AMP nucleosidase|AMP nucleoside phosphorylase, N-terminal|AMP nucleoside phosphorylase, N-terminal domain superfamily|Nucleoside phosphorylase domain|Nucleoside phosphorylase superfamily GO:0003824|GO:0008714|GO:0009116|GO:0044209 G3DSA:3.30.1730.10|G3DSA:3.40.50.1580|MF_01932|PF01048|PF10423|SSF53167|TIGR01717 IM40_04580 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022742|IPR029058 Alpha/Beta hydrolase fold|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474 IM40_04585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 IM40_04590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 IM40_04600 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007487|IPR028082 ABC transporter, substrate-binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF04392|SSF53822 IM40_04605 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002121|IPR002562|IPR006292|IPR010997|IPR012337|IPR036397 3'-5' exonuclease domain|HRDC domain|HRDC-like superfamily|Ribonuclease D|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0000166|GO:0003676|GO:0003824|GO:0005622|GO:0006139|GO:0008033|GO:0008408|GO:0033890|GO:0044237 G3DSA:1.10.150.80|G3DSA:3.30.420.10|MF_01899|PF00570|PF01612|SM00341|SM00474|SSF47819|SSF53098|TIGR01388 IM40_04610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002312|IPR004115|IPR004364|IPR004365|IPR004524|IPR012340|IPR029351 Aminoacyl-tRNA synthetase, class II (D/K/N)|Aspartate-tRNA ligase, type 1|Aspartyl/Asparaginyl-tRNA synthetase, class IIb|GAD domain|GAD-like domain superfamily|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0005524|GO:0005737|GO:0006418|GO:0016874 G3DSA:2.40.50.140|G3DSA:3.30.1360.30|G3DSA:3.30.930.10|MF_00044|PF00152|PF01336|PF02938|PR01042|SSF50249|SSF55261|SSF55681|TIGR00459 IM40_04615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002052|IPR004556|IPR007848|IPR019874|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Protein-(glutamine-N5) methyltransferase, release factor-specific|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0006479|GO:0008168|GO:0008276|GO:0032259 G3DSA:1.10.8.10|G3DSA:3.40.50.150|PF05175|PS00092|SSF53335|TIGR00536|TIGR03534 IM40_04620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000352|IPR004373|IPR005139 Peptide chain release factor|Peptide chain release factor 1|Peptide chain release factor class I/class II GO:0003747|GO:0005737|GO:0006415|GO:0016149 G3DSA:3.30.160.20|G3DSA:3.30.70.1660|MF_00093|PF00472|PF03462|PS00745|SM00937|SSF75620|TIGR00019 IM40_04625 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004154|IPR004516|IPR015807|IPR036621 Anticodon-binding|Anticodon-binding domain superfamily|Histidine-tRNA ligase|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0004821|GO:0005524|GO:0005737|GO:0006427 G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_00127|PF03129|PF13393|PIRSF001549|SSF52954|SSF55681|TIGR00442 IM40_04630 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025194 Domain of unknown function DUF4115 G3DSA:1.10.260.40|PF13413|PF13464 IM40_04635 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 IM40_04645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003453|IPR030802 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE GO:0043190 PF02405|TIGR00056 IM40_04650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 IM40_04655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR004504|IPR014721|IPR020568|IPR027417 AAA+ ATPase domain|DNA repair protein RadA|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0003684|GO:0005524|GO:0006281 G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01498|PF13481|PF13541|PR01874|SM00382|SSF52540|SSF54211|TIGR00416 IM40_04660 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 PF02674 IM40_04690 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012136|IPR029035|IPR034300 DHS-like NAD/FAD-binding domain superfamily|NADP transhydrogenase beta-like domain|NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 G3DSA:3.40.50.1220|PF02233|PIRSF000204|SSF52467 IM40_04695 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal PF12769 IM40_04700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007698|IPR007886|IPR008142|IPR008143|IPR036291 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2|NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.40.50.720|PF01262|PF05222|PS00836|PS00837|SM01002|SM01003|SSF51735|SSF52283 IM40_04705 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000297|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Trigger factor/SurA domain superfamily GO:0003755 G3DSA:1.10.4030.30|G3DSA:3.10.50.40|PF13145|PF13624|SSF109998 IM40_04730 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006885|IPR038532 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial|NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamily GO:0016651|GO:0022900 G3DSA:3.30.160.190|PF04800 IM40_04735 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001375|IPR011042|IPR029058 Alpha/Beta hydrolase fold|Peptidase S9, prolyl oligopeptidase, catalytic domain|Six-bladed beta-propeller, TolB-like GO:0006508|GO:0008236 G3DSA:2.120.10.30|G3DSA:3.40.50.1820|PF00326|SSF53474|SSF82171 IM40_04745 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00217|SSF103473 IM40_04755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 IM40_04770 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001962|IPR006426|IPR017932|IPR029055 Asparagine synthase|Asparagine synthase, glutamine-hydrolyzing|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal GO:0004066|GO:0006529 G3DSA:3.60.20.10|PF00733|PF13537|PIRSF001589|SSF52402|SSF56235|TIGR01536 IM40_04775 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003358|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 G3DSA:3.40.50.150|MF_01057|PF02390|SSF53335|TIGR00091 IM40_04785 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000644|IPR005170|IPR016169|IPR036318 CBS domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|SM00116|SM01091|SSF54631|SSF56176 IM40_04790 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002036|IPR020549|IPR023091 Endoribonuclease YbeY|Endoribonuclease YbeY, conserved site|Metalloprotease catalytic domain superfamily, predicted GO:0004222|GO:0006364 G3DSA:3.40.390.30|MF_00009|PF02130|PS01306|SSF55486|TIGR00043 IM40_04795 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003714|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PhoH-like protein GO:0005524 G3DSA:3.40.50.300|PF02562|SSF52540 IM40_04800 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002792|IPR005839|IPR006463|IPR006638|IPR007197|IPR013848|IPR023404|IPR038135 Elp3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, N-terminal domain superfamily|Radical SAM|Radical SAM, alpha/beta horseshoe|TRAM domain|tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0003824|GO:0005737|GO:0006400|GO:0016740|GO:0051536|GO:0051539 G3DSA:3.40.50.12160|G3DSA:3.80.30.20|MF_01864|PF00919|PF01938|PF04055|SM00729|SSF102114|TIGR00089|TIGR01574 IM40_04805 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 G3DSA:1.10.10.1550|PF05443 IM40_04810 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 IM40_04815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000905|IPR022496 Gcp-like domain|tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 G3DSA:3.30.420.40|PF00814|SSF53067|TIGR03725 IM40_04820 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 IM40_04830 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007497|IPR016907 Protein of unknown function DUF541|Uncharacterised conserved protein UCP029033, periplasmic protein PF04402|PIRSF029033 IM40_04840 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002372|IPR011047|IPR015943|IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat|Pyrrolo-quinoline quinone repeat|Quinoprotein alcohol dehydrogenase-like superfamily|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|PF13360|SM00564|SSF50998 IM40_04845 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR005225|IPR006073|IPR015946|IPR016484|IPR027417|IPR032859 AAA+ ATPase domain|GTP binding domain|GTP-binding protein EngA|GTPase Der, C-terminal KH-domain-like|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0005525 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00195|PF01926|PF14714|PIRSF006485|PR00326|SM00382|SSF52540|TIGR00231|TIGR03594 IM40_04850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SSF51735 IM40_04855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004398|IPR029063 RNA methyltransferase, RsmD|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168|GO:0031167 G3DSA:3.40.50.150|PF03602|PIRSF004553|SSF53335|TIGR00095 IM40_04890 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002616|IPR004803|IPR036511 Queuine tRNA-ribosyltransferase-like|tRNA-guanine transglycosylase|tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0016763|GO:0101030 G3DSA:3.20.20.105|MF_00168|PF01702|SSF51713|TIGR00430|TIGR00449 IM40_04900 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001383|IPR026569|IPR034704|IPR037147 L28p-like|Ribosomal protein L28|Ribosomal protein L28/L24|Ribosomal protein L28/L24 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.40|MF_00373|PF00830|SSF143800|TIGR00009 IM40_04905 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001347|IPR005855|IPR029055 Glucosamine-fructose-6-phosphate aminotransferase, isomerising|Nucleophile aminohydrolases, N-terminal|Sugar isomerase (SIS) GO:0004360|GO:0097367|GO:1901135|GO:1901137 G3DSA:3.40.50.10490|G3DSA:3.60.20.10|MF_00164|PF01380|PF13522|SSF53697|SSF56235|TIGR01135 IM40_04910 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001451|IPR005882|IPR011004|IPR018357|IPR025877|IPR029044 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase|Hexapeptide repeat|Hexapeptide transferase, conserved site|MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases|Trimeric LpxA-like superfamily GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0016740|GO:0019134 G3DSA:2.160.10.10|G3DSA:3.90.550.10|MF_01631|PF00132|PF12804|PS00101|SSF51161|SSF53448|TIGR01173 IM40_04915 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009045|IPR010275 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily|Protein of unknown function DUF882 G3DSA:3.30.1380.10|PF05951|SSF55166 IM40_04925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 IM40_04935 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005001|IPR010920 LSM domain superfamily|RNA-binding protein Hfq GO:0003723|GO:0006355 G3DSA:2.30.30.100|MF_00436|PF17209|SSF50182|TIGR02383 IM40_04945 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010421 Protein of unknown function DUF1013 PF06242 IM40_04950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000023|IPR012003|IPR012829|IPR015912|IPR022953|IPR035966 ATP-dependent 6-phosphofructokinase|ATP-dependent 6-phosphofructokinase, prokaryotic-type|Phosphofructokinase domain|Phosphofructokinase superfamily|Phosphofructokinase, conserved site|Phosphofructokinase, mixed-substrate PFK group III GO:0003872|GO:0005524|GO:0006002|GO:0006096|GO:0008443|GO:0047334 G3DSA:3.40.50.450|G3DSA:3.40.50.460|MF_01976|PF00365|PIRSF000532|PR00476|PS00433|SSF53784 IM40_04955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007420 Protein of unknown function DUF465 G3DSA:1.20.58.660|PF04325 IM40_04965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_04970 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001706|IPR018265|IPR021137|IPR037229 Ribosomal protein L35|Ribosomal protein L35 superfamily|Ribosomal protein L35, conserved site|Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.530|MF_00514|PF01632|PR00064|PS00936|SSF143034|TIGR00001 IM40_04975 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005813|IPR035566 Ribosomal protein L20|Ribosomal protein L20, C-terminal GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:1.10.1900.20|G3DSA:1.10.720.90|MF_00382|PD002389|PF00453|PR00062|PS00937|SSF74731|TIGR01032 IM40_04980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_04990 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002319|IPR004188|IPR004529|IPR010978|IPR022911 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Phenylalanine-tRNA ligase alpha chain 1, bacterial|Phenylalanine-tRNA ligase, class II, N-terminal|Phenylalanyl-tRNA synthetase|Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000049|GO:0000166|GO:0004812|GO:0004826|GO:0005524|GO:0005737|GO:0006432|GO:0043039 G3DSA:3.30.930.10|MF_00281|PF01409|PF02912|SSF46589|SSF55681|TIGR00468 IM40_04995 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002547|IPR004532|IPR005121|IPR005146|IPR005147|IPR009061|IPR012340|IPR020825|IPR036690 B3/B4 tRNA-binding domain|Ferrodoxin-fold anticodon-binding domain|Ferrodoxin-fold anticodon-binding domain superfamily|Nucleic acid-binding, OB-fold|Phenylalanine-tRNA ligase, class IIc, beta subunit|Phenylalanyl-tRNA synthetase, B3/B4|Putative DNA-binding domain superfamily|tRNA synthetase, B5-domain|tRNA-binding domain GO:0000049|GO:0000287|GO:0003723|GO:0004826|GO:0005524|GO:0005737|GO:0006432 G3DSA:2.40.50.140|G3DSA:3.30.56.10|G3DSA:3.30.70.380|G3DSA:3.30.930.10|G3DSA:3.50.40.10|MF_00283|PF01588|PF03147|PF03483|PF03484|SM00873|SM00874|SM00896|SSF46955|SSF50249|SSF54991|SSF55681|SSF56037|TIGR00472 IM40_05000 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006297|IPR009000|IPR013842|IPR027417|IPR031157|IPR035647|IPR038363 EF-G domain III/V-like|Elongation factor 4|Elongation factor EFG, domain V-like|GTP-binding protein LepA, C-terminal|LepA, C-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:3.30.70.2570|G3DSA:3.30.70.3380|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00071|PF00009|PF00679|PF03144|PF06421|PR00315|PS00301|SM00838|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01393 IM40_05010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 IM40_05015 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018968 Phasin PF09361 IM40_05035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001647|IPR009057 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|SSF46689 IM40_05040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019660 Putative sensory transduction regulator YbjN PF10722 IM40_05050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001509|IPR011912|IPR036291 ADP-L-glycero-D-manno-heptose-6-epimerase|NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0005975|GO:0008712|GO:0050661|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|MF_01601|PF01370|SSF51735|TIGR02197 IM40_05055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 MF_01147|PF01790|PS01311|TIGR00544 IM40_05060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003788|IPR029063|IPR038375 Protein arginine methyltransferase NDUFAF7|Protein arginine methyltransferase NDUFAF7 superfamily|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.12710|PF02636|SSF53335 IM40_05065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003730|IPR011324|IPR038371 Cytotoxic necrotizing factor-like, catalytic|Multi-copper polyphenol oxidoreductase|Multi-copper polyphenol oxidoreductase superfamily G3DSA:3.60.140.10|PF02578|SSF64438|TIGR00726 IM40_05075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000711|IPR020781|IPR026015 ATPase, OSCP/delta subunit|ATPase, OSCP/delta subunit, conserved site|F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily GO:0015986|GO:0016020|GO:0046933 G3DSA:1.10.520.20|MF_01416|PF00213|PR00125|PS00389|SSF47928|TIGR01145 IM40_05080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000194|IPR000793|IPR004100|IPR005294|IPR020003|IPR023366|IPR027417|IPR036121|IPR038376 ATP synthase subunit alpha, N-terminal domain-like superfamily|ATP synthase, F1 complex, alpha subunit|ATP synthase, alpha subunit, C-terminal|ATP synthase, alpha subunit, C-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0045261|GO:0046034|GO:0046933|GO:1902600 G3DSA:1.20.150.20|G3DSA:2.40.30.20|G3DSA:3.40.50.300|MF_01346|PF00006|PF00306|PF02874|PIRSF039088|PS00152|SSF47917|SSF50615|SSF52540|TIGR00962 IM40_05085 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000131|IPR035968 ATP synthase, F1 complex, gamma subunit|ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 G3DSA:1.10.287.80|G3DSA:3.40.1380.10|MF_00815|PF00231|PIRSF039089|PR00126|SSF52943|TIGR01146 IM40_05090 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000194|IPR003593|IPR004100|IPR005722|IPR020003|IPR024034|IPR027417|IPR036121 AAA+ ATPase domain|ATP synthase, F1 complex, beta subunit|ATPase, F1/V1 complex, beta/alpha subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0045261|GO:0046034|GO:0046933|GO:1902600 G3DSA:1.10.1140.10|G3DSA:2.40.10.170|G3DSA:3.40.50.300|MF_01347|PF00006|PF02874|PIRSF039072|PS00152|SM00382|SSF47917|SSF50615|SSF52540|TIGR01039 IM40_05095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001469|IPR020546|IPR036771 ATP synthase, F1 complex, delta/epsilon subunit|ATP synthase, F1 complex, delta/epsilon subunit, N-terminal|F0F1 ATP synthase delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933 G3DSA:2.60.15.10|MF_00530|PD000944|PF02823|SSF51344|TIGR01216 IM40_05105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_05110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR011283|IPR020904|IPR036291 Acetoacetyl-CoA reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01829 IM40_05115 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005746|IPR013766|IPR017937|IPR036249 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0006662|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 IM40_05125 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003594|IPR003661|IPR004358|IPR033479|IPR036097|IPR036890 Double Cache domain 1|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF02743|PR00344|SM00387|SSF47384|SSF55874 IM40_05130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000587|IPR000994|IPR029149|IPR032416|IPR036005 Creatinase, N-terminal|Creatinase/Aminopeptidase P/Spt16, N-terminal|Creatinase/aminopeptidase-like|Peptidase M24|Peptidase M24, C-terminal domain GO:0016787 G3DSA:3.40.350.10|G3DSA:3.90.230.10|PF00557|PF01321|PF16188|PF16189|SSF53092|SSF55920 IM40_05135 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000415|IPR023936|IPR029479 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE|Nitroreductase|Nitroreductase-like GO:0016491|GO:0055114 G3DSA:3.40.109.10|MF_01204|PF00881|SSF55469 IM40_05155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000941|IPR020809|IPR020810|IPR020811|IPR029017|IPR036849 Enolase|Enolase, C-terminal TIM barrel domain|Enolase, N-terminal|Enolase, conserved site|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal GO:0000015|GO:0000287|GO:0004634|GO:0006096 G3DSA:3.20.20.120|G3DSA:3.30.390.10|MF_00318|PF00113|PF03952|PIRSF001400|PR00148|PS00164|SM01192|SM01193|SSF51604|SSF54826|TIGR01060 IM40_05170 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13443|SM00530|SSF47413 IM40_05175 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021354 Protein of unknown function DUF2975 PF11188 IM40_05185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR017395|IPR029058 Alpha/Beta hydrolase fold|Chlorophyllase GO:0015996|GO:0047746 G3DSA:3.40.50.1820|PF12740|SSF53474 IM40_05190 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 IM40_05195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 IM40_05200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 IM40_05210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_05215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007060 Septum formation initiator FtsL/DivIC PF04977 IM40_05220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005151|IPR011659|IPR012393|IPR015943|IPR028204|IPR029045|IPR029414|IPR036034 ClpP/crotonase-like domain superfamily|PDZ superfamily|Tail specific protease|Tricorn protease|Tricorn protease C1 domain|Tricorn protease, PDZ domain|WD40-like Beta Propeller|WD40/YVTN repeat-like-containing domain superfamily GO:0005515|GO:0006508|GO:0008236 G3DSA:2.120.10.60|G3DSA:2.130.10.10|G3DSA:2.30.42.10|G3DSA:3.30.750.44|G3DSA:3.90.226.10|PF03572|PF07676|PF14684|PF14685|PIRSF036421|SM00245|SSF50156|SSF52096|SSF69304|SSF69322 IM40_05225 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025522 Protein of unknown function DUF4410 PF14366 IM40_05230 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF12706|SM00849|SSF56281 IM40_05235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001130|IPR015991|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family|Uncharacterised hydrolase TatD-type GO:0004536|GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01091|PS01137|SSF51556|TIGR00010 IM40_05240 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR027417 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13177|SM00382|SSF52540 IM40_05245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018094|IPR018095|IPR027417|IPR039430 P-loop containing nucleoside triphosphate hydrolase|Thymidylate kinase|Thymidylate kinase, conserved site|Thymidylate kinase-like domain GO:0004798|GO:0005524|GO:0006233 G3DSA:3.40.50.300|MF_00165|PF02223|PS01331|SSF52540|TIGR00041 IM40_05250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001967|IPR012338|IPR012907|IPR015956|IPR018044|IPR037167 Beta-lactamase/transpeptidase-like|D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily|Penicillin-binding protein, C-terminal domain superfamily|Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0004180|GO:0006508|GO:0009002 G3DSA:2.60.410.10|G3DSA:3.40.710.10|PF00768|PF07943|PR00725|SM00936|SSF56601|SSF69189 IM40_05260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003848|IPR014729 Domain of unknown function DUF218|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:3.40.50.620|PF02698 IM40_05270 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005224 Sugar fermentation stimulation protein G3DSA:2.40.50.580|G3DSA:3.40.1350.60|MF_00095|PF03749|TIGR00230 IM40_05275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000994|IPR001714|IPR002467|IPR036005 Creatinase/aminopeptidase-like|Peptidase M24|Peptidase M24, methionine aminopeptidase|Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 G3DSA:3.90.230.10|MF_01974|PF00557|PR00599|PS00680|SSF55920|TIGR00500 IM40_05280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001279|IPR011108|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like|Zn-dependent metallo-hydrolase, RNA specificity domain G3DSA:3.10.20.580|G3DSA:3.40.50.10710|G3DSA:3.60.15.10|PF00753|PF07521|SM00849|SSF56281 IM40_05285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004619 Type III pantothenate kinase GO:0004594 G3DSA:3.30.420.40|MF_01274|PF03309|SSF53067|TIGR00671 IM40_05290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003142|IPR004143|IPR004408 Biotin protein ligase, C-terminal|Biotin--acetyl-CoA-carboxylase ligase|Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0004077|GO:0006464 G3DSA:2.30.30.100|G3DSA:3.30.930.10|PF02237|PF03099|SSF55681|TIGR00121 IM40_05295 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001750|IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 MF_00445|PF00361|TIGR01770 IM40_05300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000260|IPR001750|IPR003918|IPR010227 NADH-quinone oxidoreductase, chain M/4|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|NADH:ubiquinone oxidoreductase|NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0008137|GO:0042773|GO:0055114 PF00361|PF01059|PR01437|TIGR01972 IM40_05305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001516|IPR001750|IPR003945|IPR010934|IPR018393 NADH dehydrogenase subunit 5, C-terminal|NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH-plastoquinone oxidoreductase, chain 5|NADH-plastoquinone oxidoreductase, chain 5 subgroup|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 PF00361|PF00662|PF06455|PR01434|PR01435|TIGR01974 IM40_05310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001133|IPR039428 NADH-ubiquinone oxidoreductase chain 4L/K|NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like GO:0016651|GO:0042773|GO:0055114 MF_01456|PF00420 IM40_05315 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 G3DSA:1.20.120.1200|PF00499 IM40_05330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007221 Rod shape-determining protein MreC GO:0008360 G3DSA:2.40.10.340|G3DSA:2.40.10.350|PF04085|PIRSF038471|TIGR00219 IM40_05335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004753 Cell shape determining protein MreB GO:0000902 G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF06723|PR01652|SSF53067|TIGR00904 IM40_05340 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009097 Cyclic phosphodiesterase G3DSA:3.90.1140.10|SSF55144 IM40_05350 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006257|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0004742|GO:0006090|GO:0016746|GO:0045254 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01349 IM40_05360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001017|IPR017597|IPR029061 Dehydrogenase, E1 component|Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y|Thiamin diphosphate-binding fold GO:0004739|GO:0006086|GO:0016624|GO:0043231 G3DSA:3.40.50.970|PF00676|SSF52518|TIGR03182 IM40_05365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001857|IPR008991|IPR018257|IPR038657 Ribosomal protein L19|Ribosomal protein L19 superfamily|Ribosomal protein L19, conserved site|Translation protein SH3-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.790|MF_00402|PF01245|PIRSF002191|PR00061|PS01015|SSF50104|TIGR01024 IM40_05370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002649|IPR016009|IPR023148|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, C-terminal|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA (guanine-N1-)-methyltransferase, bacteria|tRNA methyltransferase TRMD/TRM10-type domain GO:0008033|GO:0052906 G3DSA:1.10.1270.20|G3DSA:3.40.1280.10|MF_00605|PF01746|PIRSF000386|SSF75217|TIGR00088 IM40_05380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000307|IPR023803 Ribosomal protein S16|Ribosomal protein S16 domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1320.10|MF_00385|PF00886|SSF54565|TIGR00002 IM40_05385 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000897|IPR003593|IPR004125|IPR004780|IPR013822|IPR022941|IPR027417|IPR036891 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle protein Ffh|Signal recognition particle, SRP54 subunit|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, M-domain|Signal recognition particle, SRP54 subunit, M-domain superfamily|Signal recognition particle, SRP54 subunit, helical bundle GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500 G3DSA:1.10.260.30|G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00306|PF00448|PF02881|PF02978|PS00300|SM00382|SM00962|SM00963|SSF47446|SSF52540|TIGR00959 IM40_05390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007211 Protein of unknown function DUF378 PF04070 IM40_05400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001585|IPR004731|IPR013785|IPR018225|IPR022999 Aldolase-type TIM barrel|Transaldolase type 3B, putative|Transaldolase type 3B/Fructose-6-phosphate aldolase|Transaldolase, active site|Transaldolase/Fructose-6-phosphate aldolase GO:0003824|GO:0004801|GO:0005975 G3DSA:3.20.20.70|MF_00494|PF00923|PS00958|PS01054|SSF51569|TIGR00875 IM40_05405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR023009 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01808|PF00589|PF02899|SSF56349 IM40_05410 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004602|IPR017871|IPR027417 ABC transporter, conserved site|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 G3DSA:1.10.8.280|G3DSA:1.20.1580.10|G3DSA:3.30.190.20|G3DSA:3.40.50.300|MF_00205|PS00211|SSF52540|TIGR00630 IM40_05415 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006298|IPR009000|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|GTP-binding protein TypA|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:2.40.50.250|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03144|PR00315|PS00301|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01394 IM40_05445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003029|IPR004087|IPR009019|IPR010213|IPR010214|IPR010995|IPR012340|IPR013735|IPR015946|IPR022967|IPR025249|IPR030842|IPR036555 DNA repair Rad51/transcription factor NusA, alpha-helical|K Homology domain|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|KH domain, NusA-like|Nucleic acid-binding, OB-fold|NusA, N-terminal domain superfamily|RNA-binding domain, S1|S1 domain|Transcription factor NusA, N-terminal|Transcription termination factor NusA|Transcription termination factor NusA, C-terminal duplication|Transcription termination/antitermination protein NusA, bacterial GO:0000166|GO:0003676|GO:0003700|GO:0003723|GO:0006353|GO:0031554|GO:0031564 G3DSA:1.10.150.20|G3DSA:2.40.50.140|G3DSA:3.30.1480.10|G3DSA:3.30.300.20|MF_00945_B|PF00575|PF08529|PF13184|PF14520|SM00316|SM00322|SSF47794|SSF50249|SSF54814|SSF69705|TIGR01953|TIGR01954 IM40_05450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000178|IPR000795|IPR005225|IPR006847|IPR009000|IPR013575|IPR023115|IPR027417|IPR036925 Initiation factor 2 associated domain, bacterial|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Transcription factor, GTP-binding domain|Translation initiation factor IF- 2, domain 3|Translation initiation factor IF-2, N-terminal|Translation initiation factor IF-2, domain 3 superfamily|Translation initiation factor aIF-2, bacterial-like|Translation protein, beta-barrel domain superfamily GO:0003743|GO:0003924|GO:0005525|GO:0005622|GO:0006413 G3DSA:2.40.30.10|G3DSA:3.40.50.10050|G3DSA:3.40.50.300|MF_00100_B|PF00009|PF04760|PF08364|PF11987|PS01176|SSF50447|SSF52156|SSF52540|TIGR00231|TIGR00487 IM40_05455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000238|IPR015946|IPR020053|IPR023799 K homology domain-like, alpha/beta|Ribosome-binding factor A|Ribosome-binding factor A domain superfamily|Ribosome-binding factor A, conserved site GO:0006364 G3DSA:3.30.300.20|MF_00003|PD007327|PF02033|PS01319|SSF89919|TIGR00082 IM40_05465 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001611|IPR032675 Leucine-rich repeat|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:3.80.10.10|PF13516|SSF52047 IM40_05470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004477|IPR025405 ComEC/Rec2-related protein|Domain of unknown function DUF4131 PF03772|PF13567|TIGR00360 IM40_05475 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000924|IPR001412|IPR004527|IPR008925|IPR014729|IPR020058|IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2|Aminoacyl-tRNA synthetase, class I, conserved site|Glutamate-tRNA ligase, bacterial/mitochondrial|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000049|GO:0000166|GO:0004812|GO:0004818|GO:0005524|GO:0005737|GO:0006418|GO:0006424|GO:0043039 G3DSA:1.10.10.350|G3DSA:3.40.50.620|MF_00022|PF00749|PR00987|PS00178|SSF48163|SSF52374|TIGR00464 IM40_05480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002020|IPR010953|IPR016142|IPR016143|IPR019810|IPR024176|IPR036969 Citrate synthase|Citrate synthase active site|Citrate synthase superfamily|Citrate synthase, bacterial-type|Citrate synthase, type I|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0004108|GO:0005737|GO:0006099|GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|G3DSA:2.20.28.60|PF00285|PIRSF001369|PR00143|PS00480|SSF48256|TIGR01798 IM40_05490 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 MF_01006|PF02673 IM40_05495 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF13417|SSF47616|SSF52833 IM40_05500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR017730|IPR018368|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATPase, AAA-type, core|Chaperonin ClpB|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009408|GO:0019538|GO:0042026 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR03346 IM40_05505 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 IM40_05510 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 IM40_05525 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|SSF51735 IM40_05530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004396|IPR006073|IPR012675|IPR012676|IPR013029|IPR023192|IPR027417 Beta-grasp domain superfamily|GTP binding domain|P-loop containing nucleoside triphosphate hydrolase|Ribosome-binding ATPase YchF/Obg-like ATPase 1|TGS-like|TGS-like domain superfamily|YchF, C-terminal domain GO:0005525 G3DSA:1.10.150.300|G3DSA:3.10.20.30|G3DSA:3.40.50.300|MF_00944|PF01926|PF06071|PIRSF006641|PR00326|SSF52540|SSF81271|TIGR00092 IM40_05535 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001328|IPR018171|IPR036416 Peptidyl-tRNA hydrolase|Peptidyl-tRNA hydrolase superfamily|Peptidyl-tRNA hydrolase, conserved site GO:0004045 G3DSA:3.40.50.1470|MF_00083|PF01195|PS01195|PS01196|SSF53178|TIGR00447 IM40_05540 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001021|IPR011035|IPR020056|IPR020057|IPR029751|IPR037121 Ribosomal protein L25|Ribosomal protein L25, C-terminal|Ribosomal protein L25, beta domain|Ribosomal protein L25, long-form|Ribosomal protein L25/Gln-tRNA synthetase, N-terminal|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0008097 G3DSA:2.170.120.20|G3DSA:2.40.240.10|MF_01334|PD012503|PF01386|PF14693|SSF50715|TIGR00731 IM40_05545 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003869|IPR029063|IPR036291 NAD(P)-binding domain superfamily|Polysaccharide biosynthesis protein, CapD-like domain|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.720|PF02719|SSF51735|SSF53335 IM40_05550 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|SSF51735 IM40_05560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002740|IPR015947 EVE domain|PUA-like superfamily G3DSA:3.10.590.10|PF01878|SSF88697 IM40_05565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006109|IPR006168|IPR008927|IPR011128|IPR013328|IPR036291 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Glycerol-3-phosphate dehydrogenase, NAD-dependent|Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal|Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal|NAD(P)-binding domain superfamily GO:0004367|GO:0005975|GO:0006072|GO:0009331|GO:0016491|GO:0016616|GO:0046168|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00394|PF01210|PF07479|PIRSF000114|PR00077|PS00957|SSF48179|SSF51735 IM40_05570 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000905|IPR017861|IPR022450 Gcp-like domain|Kae1/TsaD family|tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 G3DSA:3.30.420.40|MF_01445|PF00814|PR00789|SSF53067|TIGR00329|TIGR03723 IM40_05580 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|PF00496|PIRSF002741|SSF53850 IM40_05585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000298|IPR013833|IPR035973 Cytochrome c oxidase subunit III-like|Cytochrome c oxidase subunit III-like superfamily|Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0015002|GO:0016020|GO:0022904 G3DSA:1.10.287.70|G3DSA:1.20.120.80|PF00510|SSF81452 IM40_05590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002994 Surfeit locus 1/Shy1 GO:0016020 PF02104 IM40_05595 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001431|IPR007863|IPR011249|IPR011765 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal|Peptidase M16, zinc-binding site GO:0003824|GO:0004222|GO:0006508|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|PS00143|SSF63411 IM40_05600 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003148|IPR006153|IPR036291|IPR038770 Cation/H+ exchanger|NAD(P)-binding domain superfamily|Regulator of K+ conductance, N-terminal|Sodium/solute symporter superfamily GO:0006812|GO:0006813|GO:0015299|GO:0016021|GO:0055085 G3DSA:1.20.1530.20|G3DSA:3.40.50.720|PF00999|PF02254|SSF51735 IM40_05615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002698|IPR024185|IPR037171 5-formyltetrahydrofolate cyclo-ligase|5-formyltetrahydrofolate cyclo-ligase-like domain superfamily|NagB/RpiA transferase-like G3DSA:3.40.50.10420|PF01812|PIRSF006806|SSF100950|TIGR02727 IM40_05620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005235|IPR029052 Metallo-dependent phosphatase-like|Metallophosphoesterase, YmdB-like G3DSA:3.60.21.10|PF13277|PIRSF004789|SSF56300|TIGR00282 IM40_05640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR022898|IPR024567|IPR036397 Ribonuclease H superfamily|Ribonuclease H-like superfamily|Ribonuclease HII|Ribonuclease HII/HIII domain GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00052_B|PF01351|SSF53098 IM40_05645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025263|IPR032712 AsmA-like, C-terminal|Domain of unknown function DUF3971 PF13116|PF13502 IM40_05650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000866|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|PIRSF000239|SSF52833 IM40_05660 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001107|IPR010200|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|HflC GO:0016021|GO:0052547 G3DSA:3.30.479.30|PF01145|PIRSF005651|SM00244|SSF117892|TIGR01932 IM40_05665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001478|IPR001940|IPR009003|IPR011782|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 IM40_05670 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000383|IPR029058 Alpha/Beta hydrolase fold|Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 G3DSA:3.40.50.1820|PF02129|SSF53474 IM40_05690 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000944|IPR030489|IPR036388|IPR036390 Transcription regulator Rrf2-type|Transcription regulator Rrf2-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF02082|PS01332|SSF46785|TIGR00738 IM40_05695 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR016454 Aminotransferase class V domain|Cysteine desulfurase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824 G3DSA:1.10.260.50|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PIRSF005572|SSF53383 IM40_05700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000192|IPR010240|IPR015421|IPR015422|IPR015424|IPR016454|IPR020578 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase|Cysteine desulfurase IscS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170|GO:0031071|GO:0044571 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00331|PF00266|PIRSF005572|PS00595|SSF53383|TIGR02006 IM40_05705 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002871|IPR011339 ISC system FeS cluster assembly, IscU scaffold|NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 G3DSA:3.90.1010.10|PF01592|SSF82649|TIGR01999 IM40_05710 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000361|IPR016092|IPR017870|IPR035903 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site|HesB-like domain superfamily GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|PF01521|PS01152|SSF89360|TIGR00049 IM40_05720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010236|IPR013126|IPR018181|IPR029047|IPR029048 Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain superfamily|Heat shock protein 70kD, peptide-binding domain superfamily|ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR01991 IM40_05750 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR015884|IPR036291|IPR037062 Malic enzyme, N-terminal domain|Malic enzyme, N-terminal domain superfamily|Malic enzyme, NAD-binding|Malic enzyme, conserved site|NAD(P)-binding domain superfamily|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PIRSF036684|PS00331|SM00919|SM01274|SSF51735|SSF53223|SSF53659 IM40_05755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000644|IPR006667|IPR006668|IPR006669|IPR036739|IPR038048|IPR038076 CBS domain|Magnesium transporter MgtE|Magnesium transporter MgtE, transmembrane domain|Magnesium transporter, MgtE intracellular domain|MgtE, N-terminal domain superfamily|SLC41 divalent cation transporters, integral membrane domain|SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324|GO:0015095|GO:0015693|GO:0016020 G3DSA:1.10.357.20|G3DSA:1.25.60.10|G3DSA:3.10.580.10|PF00571|PF01769|PF03448|SM00116|SM00924|SSF158791|SSF161093|SSF54631|TIGR00400 IM40_05760 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002155|IPR016039|IPR020610|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|SSF53901|TIGR01930 IM40_05765 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_05770 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_05775 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR026337 HEXXH motif domain TIGR04267 IM40_05790 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001126|IPR017961|IPR025188|IPR036775 DNA polymerase, Y-family, little finger domain|DNA polymerase, Y-family, little finger domain superfamily|Domain of unknown function DUF4113|UmuC domain GO:0003684|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.1490.100|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|SSF100879|SSF56672 IM40_05800 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_05830 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584|IPR012337 Integrase, catalytic core|Ribonuclease H-like superfamily GO:0015074 PF13683|SSF53098 IM40_05850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SSF52172 IM40_05855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_05865 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001611|IPR032675 Leucine-rich repeat|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:3.80.10.10|PF13516|SM00368|SSF52047 IM40_05870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic SSF101898 IM40_05875 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022385 Rhs repeat-associated core GO:0097264 G3DSA:2.180.10.10|TIGR03696 IM40_05885 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF13683 IM40_05895 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000109|IPR005279|IPR036259 Dipeptide/tripeptide permease|MFS transporter superfamily|Proton-dependent oligopeptide transporter family GO:0015833|GO:0016020|GO:0022857|GO:0055085|GO:1904680 G3DSA:1.20.1250.20|PF00854|SSF103473|TIGR00924 IM40_05900 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10 IM40_05905 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_05935 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001269|IPR004652|IPR013785|IPR018517|IPR024036 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, TIM-barrel, NifR3|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine synthase, putative, C-terminal GO:0003824|GO:0008033|GO:0016491|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.10.1200.80|G3DSA:3.20.20.70|PF01207|PIRSF006621|PS01136|SSF51395|TIGR00737 IM40_05940 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002197|IPR005412|IPR009057 DNA binding HTH domain, Fis-type|DNA-binding protein Fis|Homeobox-like domain superfamily GO:0003677|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF02954|PIRSF002097|PR01590|SSF46689 IM40_05950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540 IM40_05955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003148|IPR006036|IPR006037|IPR036291|IPR036721 NAD(P)-binding domain superfamily|Potassium uptake protein TrkA|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, C-terminal domain superfamily|Regulator of K+ conductance, N-terminal GO:0005886|GO:0006813|GO:0008324|GO:0015079 G3DSA:3.30.70.1450|G3DSA:3.40.50.720|PF02080|PF02254|PR00335|SSF116726|SSF51735 IM40_05965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.2300|PF00072|SM00448|SSF52172 IM40_05970 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004316 SWEET sugar transporter GO:0016021 G3DSA:1.20.1280.290|PF03083 IM40_05980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019291 Host attachment protein PF10116 IM40_05990 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 IM40_06005 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001303|IPR036409 Class II aldolase/adducin N-terminal|Class II aldolase/adducin N-terminal domain superfamily G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 IM40_06040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021508 Tail completion protein PF11367 IM40_06135 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000189|IPR008258|IPR008939|IPR023346 Lysozyme-like domain superfamily|Lytic transglycosylase, superhelical U-shaped|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0004553|GO:0008933|GO:0016020|GO:0042597 G3DSA:1.10.530.10|PF01464|PS00922|SSF48435|SSF53955 IM40_06140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002220|IPR005263|IPR013785|IPR020624|IPR020625 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site|Schiff base-forming aldolase, conserved site GO:0003824|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00665|PS00666|SM01130|SSF51569|TIGR00674 IM40_06145 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000037|IPR020081|IPR023620 Small protein B|SsrA-binding protein|SsrA-binding protein, conserved site GO:0003723 G3DSA:2.40.280.10|MF_00023|PD004488|PF01668|PS01317|SSF74982|TIGR00086 IM40_06155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008462|IPR026042|IPR036629 CsbD-like domain|Stress response protein YjbJ|YjbJ superfamily G3DSA:1.10.1470.10|PF05532|PIRSF039008|SSF69047 IM40_06160 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 IM40_06170 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008909|IPR015944 DALR anticodon binding|Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004814|GO:0004820|GO:0005524|GO:0005737|GO:0006420|GO:0006426 MF_00255|PF02092|PF05746|PR01045|SSF109604|TIGR00211 IM40_06175 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 G3DSA:1.20.58.180|G3DSA:3.30.930.10|MF_00254|PF02091|PR01044|SSF55681|TIGR00388 IM40_06180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009003 Peptidase S1, PA clan G3DSA:2.40.10.10|SSF50494 IM40_06195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011008 Dimeric alpha-beta barrel SSF54909 IM40_06200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005025|IPR029039 Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218 IM40_06210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000722|IPR006592|IPR007066|IPR007080|IPR007081|IPR007083|IPR012754|IPR038120 DNA-directed RNA polymerase, subunit beta-prime|RNA polymerase Rpb1, domain 1|RNA polymerase Rpb1, domain 3|RNA polymerase Rpb1, domain 4|RNA polymerase Rpb1, domain 5|RNA polymerase Rpb1, funnel domain superfamily|RNA polymerase, N-terminal|RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 G3DSA:1.10.132.30|G3DSA:1.10.150.390|G3DSA:1.10.1790.20|G3DSA:1.10.274.100|G3DSA:1.10.40.90|G3DSA:2.40.50.100|MF_01322|PF00623|PF04983|PF04997|PF04998|PF05000|SM00663|SSF64484|TIGR02386 IM40_06215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007120|IPR007121|IPR007641|IPR007642|IPR007644|IPR007645|IPR010243|IPR014724|IPR019462|IPR037033|IPR037034 DNA-directed RNA polymerase beta subunit, bacterial-type|DNA-directed RNA polymerase, beta subunit, external 1 domain|DNA-directed RNA polymerase, subunit 2, hybrid-binding domain|DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily|RNA polymerase Rpb2, OB-fold|RNA polymerase Rpb2, domain 2|RNA polymerase Rpb2, domain 2 superfamily|RNA polymerase Rpb2, domain 3|RNA polymerase Rpb2, domain 7|RNA polymerase, beta subunit, conserved site|RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 G3DSA:2.40.270.10|G3DSA:2.40.50.100|G3DSA:2.40.50.150|G3DSA:3.90.1100.10|G3DSA:3.90.1110.10|G3DSA:3.90.1800.10|MF_01321|PF00562|PF04560|PF04561|PF04563|PF04565|PF10385|PS01166|SSF64484|TIGR02013 IM40_06220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000206|IPR008932|IPR013823|IPR014719|IPR036235 Ribosomal protein L7/L12|Ribosomal protein L7/L12, C-terminal|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like|Ribosomal protein L7/L12, oligomerisation|Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.710|G3DSA:3.30.1390.10|MF_00368|PD001326|PF00542|PF16320|SSF48300|SSF54736|TIGR00855 IM40_06225 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001790|IPR002363|IPR022973 Ribosomal protein L10|Ribosomal protein L10, eubacterial, conserved site|Ribosomal protein L10P GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0042254 G3DSA:3.30.70.1730|MF_00362|PD968187|PF00466|PS01109|SSF160369 IM40_06230 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002143|IPR005878|IPR016095|IPR023673|IPR023674|IPR028364 Ribosomal protein L1|Ribosomal protein L1, 3-layer alpha/beta-sandwich|Ribosomal protein L1, bacterial-type|Ribosomal protein L1, conserved site|Ribosomal protein L1-like|Ribosomal protein L1/ribosomal biogenesis protein GO:0003723|GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.190.20|G3DSA:3.40.50.790|MF_01318_B|PF00687|PIRSF002155|PS01199|SSF56808|TIGR01169 IM40_06235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000911|IPR006519|IPR020783|IPR020784|IPR036769|IPR036796 Ribosomal protein L11, C-terminal|Ribosomal protein L11, C-terminal domain superfamily|Ribosomal protein L11, N-terminal|Ribosomal protein L11, bacterial-type|Ribosomal protein L11/L12|Ribosomal protein L11/L12, N-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:1.10.10.2720|G3DSA:3.30.1550.10|MF_00736|PD001367|PF00298|PF03946|SM00649|SSF46906|SSF54747|TIGR01632 IM40_06240 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001062|IPR005824|IPR006645|IPR008991|IPR014722|IPR015869|IPR036735 KOW|NusG, N-terminal|NusG, N-terminal domain superfamily|Ribosomal protein L2, domain 2|Transcription antitermination protein, NusG|Transcription antitermination protein, NusG, bacteria, conserved site|Translation protein SH3-like domain superfamily GO:0006355|GO:0032784 G3DSA:2.30.30.30|G3DSA:3.30.70.940|MF_00948|PF00467|PF02357|PR00338|PS01014|SM00738|SM00739|SSF50104|SSF82679|TIGR00922 IM40_06245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001901|IPR005807|IPR038379 Protein translocase complex, SecE/Sec61-gamma subunit|SecE subunit of protein translocation complex, bacterial-like|SecE superfamily GO:0006605|GO:0006886|GO:0009306|GO:0015450|GO:0016020|GO:0016021 G3DSA:1.20.5.1030|MF_00422|PF00584|PR01650|PS01067|TIGR00964 IM40_06255 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 IM40_06275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 IM40_06280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002109|IPR011767|IPR011900|IPR014025|IPR036249 Glutaredoxin|Glutaredoxin active site|Glutaredoxin subgroup|Glutaredoxin, GrxC|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|PR00160|PS00195|SSF52833|TIGR02181 IM40_06285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_06300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005031|IPR023393 Coenzyme Q-binding protein COQ10, START domain|START-like domain superfamily G3DSA:3.30.530.20|PF03364|SSF55961 IM40_06305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003698|IPR006638|IPR007197|IPR013785 Aldolase-type TIM barrel|Elp3/MiaB/NifB|Lipoyl synthase|Radical SAM GO:0003824|GO:0009107|GO:0016992|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_00206|PF04055|PIRSF005963|SM00729|SSF102114|TIGR00510 IM40_06310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001100|IPR004099|IPR006258|IPR012999|IPR016156|IPR023753|IPR036188 Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004148|GO:0009055|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|SSF51905|SSF55424|TIGR01350 IM40_06315 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.12740|PF00072|PF00486|SM00448|SM00862|SSF52172 IM40_06325 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002052|IPR007473|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Ribosomal RNA large subunit methyltransferase J|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0008649|GO:0032259|GO:0070475 G3DSA:3.40.50.150|MF_00934|PF04378|PS00092|SSF53335 IM40_06330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000014|IPR001610|IPR003594|IPR004358|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAC motif|PAS domain|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF02518|PF13426|PR00344|SM00086|SM00387|SSF47384|SSF55785|SSF55874|TIGR00229 IM40_06355 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003716|IPR006110|IPR012293|IPR036161 DNA-directed RNA polymerase, omega subunit|RNA polymerase subunit, RPB6/omega|RNA polymerase, subunit omega/K/RPB6|RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 G3DSA:3.90.940.10|MF_00366|PF01192|SM01409|SSF63562|TIGR00690 IM40_06360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain superfamily|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:1.10.3210.10|G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00471|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 IM40_06365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003111|IPR003593|IPR003959|IPR004815|IPR008268|IPR008269|IPR014721|IPR015947|IPR020568|IPR027417|IPR027543 AAA+ ATPase domain|ATPase, AAA-type, core|Lon protease, bacterial|Lon protease, bacterial/eukaryotic-type|Lon, substrate-binding domain|P-loop containing nucleoside triphosphate hydrolase|PUA-like superfamily|Peptidase S16, Lon proteolytic domain|Peptidase S16, active site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 G3DSA:1.10.8.60|G3DSA:1.20.58.1480|G3DSA:2.30.130.40|G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01973|PF00004|PF02190|PF05362|PIRSF001174|PR00830|PS01046|SM00382|SM00464|SSF52540|SSF54211|SSF88697|TIGR00763 IM40_06370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR003959|IPR004487|IPR010603|IPR019489|IPR027417|IPR038366 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp protease, ATP-binding subunit ClpX|P-loop containing nucleoside triphosphate hydrolase|Zinc finger, ClpX C4-type|Zinc finger, ClpX C4-type superfamily GO:0005524|GO:0006457|GO:0008270|GO:0046983|GO:0051082 G3DSA:1.10.8.60|G3DSA:3.30.50.30|G3DSA:3.40.50.300|MF_00175|PF06689|PF07724|PF10431|SM00382|SM00994|SM01086|SSF52540|SSF57716|TIGR00382 IM40_06375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001907|IPR018215|IPR023562|IPR029045|IPR033135 ATP-dependent Clp protease proteolytic subunit|Clp protease proteolytic subunit /Translocation-enhancing protein TepA|ClpP, Ser active site|ClpP, histidine active site|ClpP/crotonase-like domain superfamily GO:0004252|GO:0006508 G3DSA:3.90.226.10|MF_00444|PF00574|PR00127|PS00381|PS00382|SSF52096|TIGR00493 IM40_06380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001179|IPR005215|IPR008880|IPR008881|IPR027304|IPR036611|IPR037041 FKBP-type peptidyl-prolyl cis-trans isomerase domain|Trigger factor|Trigger factor ribosome-binding domain superfamily|Trigger factor, C-terminal|Trigger factor, C-terminal domain superfamily|Trigger factor, ribosome-binding, bacterial|Trigger factor/SurA domain superfamily GO:0006457|GO:0015031 G3DSA:1.10.3120.10|G3DSA:3.10.50.40|G3DSA:3.30.70.1050|MF_00303|PF00254|PF05697|PF05698|PIRSF003095|SSF102735|SSF109998|SSF54534|TIGR00115 IM40_06400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417|IPR037219 AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase M41-like|Peptidase, FtsH GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021 G3DSA:1.10.8.60|G3DSA:1.20.58.760|G3DSA:2.40.50.920|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|SM00382|SSF140990|SSF52540|TIGR01241 IM40_06440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|SSF55811 IM40_06470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_06475 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003180|IPR011034|IPR036995 Formyl transferase-like, C-terminal domain superfamily|Methylpurine-DNA glycosylase|Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003824|GO:0003905|GO:0006284 G3DSA:3.10.300.10|MF_00527|PF02245|SSF50486|TIGR00567 IM40_06490 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_06505 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009003 Peptidase S1, PA clan G3DSA:2.40.10.10|SSF50494 IM40_06510 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036249 Thioredoxin-like superfamily G3DSA:3.40.30.10|SSF52833 IM40_06525 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003601|IPR003602|IPR005733|IPR006171|IPR013497|IPR013498|IPR013824|IPR013825|IPR013826|IPR023405|IPR023406|IPR025589|IPR028612 DNA topoisomerase I, bacterial-type|DNA topoisomerase I, type IA|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|DNA topoisomerase, type IA, zn finger|TOPRIM domain|Topoisomerase C-terminal repeat GO:0003677|GO:0003916|GO:0003917|GO:0005694|GO:0006265 G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.40.50.140|MF_00952|PF01131|PF01396|PF01751|PF13368|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|SSF57783|TIGR01051 IM40_06530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003488|IPR036388 DNA recombination-mediator protein A|Winged helix-like DNA-binding domain superfamily GO:0009294 G3DSA:1.10.10.10|G3DSA:3.40.50.450|PF02481|SSF102405|TIGR00732 IM40_06535 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 MF_01043|PF02660|SM01207|TIGR00023 IM40_06540 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001537|IPR004441|IPR013123|IPR029026|IPR029028|IPR029064 50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|RNA 2-O ribose methyltransferase, substrate binding|RNA methyltransferase TrmH family|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|PF00588|PF08032|SM00967|SSF55315|SSF75217|TIGR00186 IM40_06545 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 IM40_06555 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SSF48452 IM40_06560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 IM40_06565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000801|IPR029058 Alpha/Beta hydrolase fold|Putative esterase PF00756|SSF53474 IM40_06570 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR013094|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-3 GO:0016787 G3DSA:3.40.50.1820|PF07859|SSF53474 IM40_06585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003500|IPR004785|IPR036569 Ribose 5-phosphate isomerase B|Sugar-phosphate isomerase, RpiB/LacA/LacB family|Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0004751|GO:0005975|GO:0006098|GO:0016853 G3DSA:3.40.1400.10|PF02502|PIRSF005384|SSF89623|TIGR00689|TIGR01120 IM40_06610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003399|IPR030970 Mce/MlaD|Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 PF02470|TIGR04430 IM40_06620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000445|IPR003265|IPR003651|IPR004035|IPR004036|IPR005759|IPR011257|IPR023170 DNA glycosylase|Endonuclease III|Endonuclease III, iron-sulphur binding site|Endonuclease III-like, conserved site-2|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain GO:0003677|GO:0003824|GO:0003906|GO:0006281|GO:0006284|GO:0051539 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|MF_00942|PF00633|PF00730|PF10576|PIRSF001435|PS00764|PS01155|SM00478|SM00525|SSF48150|TIGR01083 IM40_06635 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 IM40_06640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004667|IPR036259 ADP/ATP carrier protein|MFS transporter superfamily GO:0005471|GO:0006862|GO:0016021 PF03219|SSF103473|TIGR00769 IM40_06645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009097 Cyclic phosphodiesterase G3DSA:3.90.1140.10|SSF55144 IM40_06650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004147|IPR011009 Protein kinase-like domain superfamily|UbiB domain PF03109|SSF56112 IM40_06655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001697|IPR011037|IPR015793|IPR015795|IPR015806|IPR015813|IPR036918 Pyruvate kinase|Pyruvate kinase, C-terminal|Pyruvate kinase, C-terminal domain superfamily|Pyruvate kinase, barrel|Pyruvate kinase, insert domain superfamily|Pyruvate kinase-like, insert domain superfamily|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955 G3DSA:2.40.33.10|G3DSA:3.20.20.60|G3DSA:3.40.1380.20|PF00224|PF02887|PR01050|SSF50800|SSF51621|SSF52935|TIGR01064 IM40_06660 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_06665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PD037892|PF00117|SSF52317 IM40_06670 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001912|IPR002942|IPR005709|IPR018079|IPR036986 RNA-binding S4 domain|RNA-binding S4 domain superfamily|Ribosomal protein S4, bacterial-type|Ribosomal protein S4, conserved site|Ribosomal protein S4/S9, N-terminal GO:0003723|GO:0003735|GO:0005622|GO:0006412|GO:0015935|GO:0019843 G3DSA:1.10.1050.10|G3DSA:3.10.290.10|MF_01306_B|PF00163|PF01479|PS00632|SM00363|SM01390|SSF55174|TIGR01017 IM40_06680 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000846|IPR022663|IPR022664|IPR023940|IPR036291 Dihydrodipicolinate reductase|Dihydrodipicolinate reductase, C-terminal|Dihydrodipicolinate reductase, N-terminal|Dihydrodipicolinate reductase, conserved site|NAD(P)-binding domain superfamily GO:0008839|GO:0009089|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00102|PF01113|PF05173|PIRSF000161|PS01298|SSF51735|SSF55347|TIGR00036 IM40_06685 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036188 FAD/NAD(P)-binding domain superfamily G3DSA:3.30.70.20|G3DSA:3.30.9.90|G3DSA:3.50.50.60|PF05187|PF13450|PR00420|SSF51905|SSF54373|SSF54862 IM40_06715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000085|IPR010994|IPR011114|IPR012340|IPR013849|IPR036267 Bacterial DNA recombination protein RuvA|DNA helicase, Holliday junction RuvA type, domain I, bacterial|Holliday junction DNA helicase RuvA, C-terminal|Nucleic acid-binding, OB-fold|RuvA domain 2-like|RuvA, C-terminal domain superfamily GO:0003678|GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 G3DSA:1.10.150.20|G3DSA:1.10.8.10|G3DSA:2.40.50.140|MF_00031|PF01330|PF07499|PF14520|SSF46929|SSF47781|SSF50249|TIGR00084 IM40_06720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002176|IPR012337|IPR020563|IPR036397 Crossover junction endodeoxyribonuclease RuvC|Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0004520|GO:0006281|GO:0006310|GO:0008821 G3DSA:3.30.420.10|MF_00034|PF02075|PR00696|PS01321|SSF53098|TIGR00228 IM40_06725 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002876|IPR017856|IPR026564|IPR029072 Integrase-like, N-terminal|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 3|YebC-like G3DSA:1.10.10.200|G3DSA:3.30.70.980|MF_00693|PF01709|SSF75625|TIGR01033 IM40_06755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032675 Leucine-rich repeat domain superfamily G3DSA:3.80.10.10|SSF52058 IM40_06770 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009354 Usg-like PF06233 IM40_06775 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025460 Protein of unknown function DUF4280 PF14107 IM40_06780 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002326|IPR036909 Cytochrome c-like domain superfamily|Cytochrome c1 GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02167|PR00603|SSF46626 IM40_06785 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005797|IPR005798|IPR016174|IPR027387|IPR030689|IPR036150 Cytochrome b|Cytochrome b/b6, C-terminal|Cytochrome b/b6, C-terminal domain superfamily|Cytochrome b/b6, N-terminal|Cytochrome b/b6-like domain superfamily|Di-haem cytochrome, transmembrane GO:0006122|GO:0008121|GO:0009055|GO:0016020|GO:0016491|GO:0022904|GO:0045275 G3DSA:1.20.810.10|PF00032|PF00033|PIRSF038885|SSF81342|SSF81648 IM40_06790 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005805|IPR006317|IPR017941|IPR019470|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily|Rieske iron-sulphur protein, C-terminal|Ubiquinol-cytochrome c reductase, iron-sulphur subunit|Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0016020|GO:0016491|GO:0051537|GO:0055114 G3DSA:1.20.5.510|G3DSA:2.102.10.10|PF00355|PF10399|PR00162|SSF50022|TIGR01416 IM40_06795 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009599 Protein of unknown function DUF1207 PF06727 IM40_06810 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_06815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR032675|IPR036047 F-box domain|F-box-like domain superfamily|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:1.20.1280.50|G3DSA:3.80.10.10|PF12937|SSF52047|SSF81383 IM40_06820 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002559|IPR025161 Putative transposase IS4/IS5 family|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF13340 IM40_06825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016130|IPR029021 Protein-tyrosine phosphatase, active site|Protein-tyrosine phosphatase-like GO:0004725|GO:0016311 G3DSA:3.30.70.1690|G3DSA:3.90.190.10|PD069361|PF14566|PS00383|SM01301|SSF52799 IM40_06835 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016130|IPR029021 Protein-tyrosine phosphatase, active site|Protein-tyrosine phosphatase-like GO:0004725|GO:0016311 G3DSA:3.30.70.1690|G3DSA:3.90.190.10|PD069361|PF14566|PS00383|SM01301|SSF52799 IM40_06840 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002109|IPR004480|IPR014434|IPR036249 Glutaredoxin|Monothiol glutaredoxin|Monothiol glutaredoxin-related|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0015036|GO:0045454 G3DSA:3.40.30.10|PF00462|PIRSF005894|SSF52833|TIGR00365 IM40_06845 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002634|IPR036065 BolA protein|BolA-like superfamily G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 IM40_06850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008312|IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath|Type VI secretion system, VipA, VC_A0107 or Hcp2 PF05591|PF05943|TIGR03355|TIGR03358 IM40_06855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036624 Hcp1-like superfamily G3DSA:2.30.110.20|SSF141452 IM40_06860 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007048|IPR017737 GpW/Gp25/anti-adapter protein IraD|Type VI secretion system, lysozyme-related protein PF04965|SSF160719|TIGR03357 IM40_06870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003675 CAAX amino terminal protease GO:0016020 PF02517 IM40_06875 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001075|IPR014824|IPR034904|IPR035433|IPR036498 Fe-S cluster assembly domain superfamily|NFU1-like|NIF system FeS cluster assembly, NifU, C-terminal|Scaffold protein Nfu/NifU, N-terminal|Scaffold protein Nfu/NifU, N-terminal domain superfamily GO:0005506|GO:0016226|GO:0051536 G3DSA:3.30.1370.70|G3DSA:3.30.300.130|PD002830|PF01106|PF08712|PIRSF036773|SM00932|SSF110836|SSF117916 IM40_06885 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002305|IPR002307|IPR014729|IPR024107|IPR036986 Aminoacyl-tRNA synthetase, class Ic|RNA-binding S4 domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold|Tyrosine-tRNA ligase|Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0000166|GO:0003723|GO:0004812|GO:0004831|GO:0005524|GO:0005737|GO:0006418|GO:0006437 G3DSA:1.10.240.10|G3DSA:3.10.290.10|G3DSA:3.40.50.620|MF_02006|PF00579|PR01040|SSF52374|SSF55174|TIGR00234 IM40_06890 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 IM40_06895 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 IM40_06915 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003761|IPR037004 Exonuclease VII, small subunit|Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 G3DSA:1.10.287.1040|MF_00337|PD028235|PF02609|SSF116842|TIGR01280 IM40_06935 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004549|IPR005479|IPR005481|IPR005482|IPR011054|IPR016185 Acetyl-CoA carboxylase, biotin carboxylase|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0005524|GO:0016874 G3DSA:3.30.470.130|PF00289|PF02785|PF02786|SM00878|SSF51246|SSF52440|SSF56059|TIGR00514 IM40_06940 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000089|IPR001249|IPR001882|IPR011053 Acetyl-CoA biotin carboxyl carrier|Biotin-binding site|Biotin/lipoyl attachment|Single hybrid motif GO:0003989|GO:0006633|GO:0009317 G3DSA:2.40.50.100|PF00364|PR01071|PS00188|SSF51230|TIGR00531 IM40_06945 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014017|IPR014151|IPR027417|IPR034739 DNA helicase, AddA type|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:3.40.50.300|PF00580|PF13361|SSF52540|TIGR02784 IM40_06950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR027417|IPR038726 P-loop containing nucleoside triphosphate hydrolase|PD-(D/E)XK endonuclease-like domain, AddAB-type PF12705|SSF52540 IM40_06955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003442|IPR027417 P-loop containing nucleoside triphosphate hydrolase|tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 G3DSA:3.40.50.300|PF02367|SSF52540|TIGR00150 IM40_06960 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002582|IPR004568|IPR008278|IPR037143 4'-phosphopantetheinyl transferase domain|4'-phosphopantetheinyl transferase domain superfamily|Holo-[acyl carrier protein] synthase|Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 G3DSA:3.90.470.20|MF_00101|PD004282|PF01648|SSF56214|TIGR00516|TIGR00556 IM40_06965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001412|IPR002305|IPR002306|IPR014729|IPR024109 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|Rossmann-like alpha/beta/alpha sandwich fold|Tryptophan-tRNA ligase|Tryptophan-tRNA ligase, bacterial-type GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0005737|GO:0006418|GO:0006436 G3DSA:1.10.240.10|G3DSA:3.40.50.620|MF_00140_B|PF00579|PR01039|PS00178|SSF52374|TIGR00233 IM40_06970 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004268 Peptidoglycan biosynthesis protein MurJ MF_02078|PF03023|PIRSF002869|PR01806|TIGR01695 IM40_06980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004268 Peptidoglycan biosynthesis protein MurJ MF_02078|PF03023|PIRSF002869|PR01806|TIGR01695 IM40_06990 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR036047 F-box domain|F-box-like domain superfamily GO:0005515 G3DSA:1.20.1280.50|PF12937|SM00256|SSF81383 IM40_07020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_07050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000432|IPR005748|IPR007695|IPR007696|IPR007860|IPR007861|IPR016151|IPR017261|IPR027417|IPR036187|IPR036678 DNA mismatch repair protein MutS|DNA mismatch repair protein MutS, C-terminal|DNA mismatch repair protein MutS, N-terminal|DNA mismatch repair protein MutS, clamp|DNA mismatch repair protein MutS, connector domain|DNA mismatch repair protein MutS, core|DNA mismatch repair protein MutS, core domain superfamily|DNA mismatch repair protein MutS-like, N-terminal|DNA mismatch repair protein MutS/MSH|MutS, connector domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006298|GO:0030983 G3DSA:1.10.1420.10|G3DSA:3.30.420.110|G3DSA:3.40.1170.10|G3DSA:3.40.50.300|MF_00096|PF00488|PF01624|PF05188|PF05190|PF05192|PIRSF037677|PS00486|SM00533|SM00534|SSF48334|SSF52540|SSF53150|SSF55271|TIGR01070 IM40_07055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002938|IPR010971|IPR011295|IPR018168|IPR036188 2-polyprenyl-6-methoxyphenol 4-hydroxylase|FAD-binding domain|FAD/NAD(P)-binding domain superfamily|Ubiquinone biosynthesis hydroxylase UbiH/COQ6|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0006744|GO:0008681|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|PS01304|SSF51905|TIGR01984|TIGR01988 IM40_07060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002156|IPR012337|IPR022892|IPR036397 Ribonuclease H domain|Ribonuclease H superfamily|Ribonuclease H-like superfamily|Ribonuclease HI GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00042|PF00075|SSF53098 IM40_07075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000103|IPR022890|IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Ferredoxin--NADP reductase, type 2|Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0004324|GO:0016491|GO:0055114 G3DSA:3.50.50.60|MF_01685|PF07992|PR00368|PR00469|SSF51905 IM40_07080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005828|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PF07690|SSF103473 IM40_07085 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001576|IPR015824|IPR015911|IPR036043 Phosphoglycerate kinase|Phosphoglycerate kinase superfamily|Phosphoglycerate kinase, N-terminal|Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 G3DSA:3.40.50.1260|MF_00145|PF00162|PIRSF000724|PR00477|PS00111|SSF53748 IM40_07095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003711|IPR036101 CarD-like/TRCF domain|CarD-like/TRCF domain superfamily G3DSA:1.20.58.1290|G3DSA:2.30.30.840|PF02559|SM01058|SSF141259 IM40_07100 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006127|IPR006128|IPR006129 Adhesin B|Adhesion lipoprotein|Periplasmic solute binding protein, ZnuA-like GO:0007155|GO:0030001|GO:0046872 G3DSA:3.40.50.1980|PF01297|PR00690|PR00691|SSF53807 IM40_07105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001626|IPR037294 ABC transporter, BtuC-like|ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 PF00950|SSF81345 IM40_07120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 IM40_07125 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003838 ABC transporter permease protein domain GO:0016020 PF02687 IM40_07135 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003848 Domain of unknown function DUF218 PD207074|PF02698 IM40_07140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 PF01553|SM00563|SSF69593 IM40_07145 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018666 Protein of unknown function DUF2125 PF09898 IM40_07150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001611|IPR032675 Leucine-rich repeat|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:3.80.10.10|PF13855|SSF52047 IM40_07155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005247|IPR008914|IPR036610 PEBP-like superfamily|Phosphatidylethanolamine-binding protein|YbhB/YbcL G3DSA:3.90.280.10|PF01161|SSF49777|TIGR00481 IM40_07165 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010233|IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase|Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008168|GO:0008425 G3DSA:3.40.50.150|MF_00472|PF08241|SSF53335|TIGR01983 IM40_07170 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001048|IPR001341|IPR005260|IPR018042|IPR027795|IPR036393 Acetylglutamate kinase-like superfamily|Aspartate kinase|Aspartate kinase, conserved site|Aspartate kinase, monofunctional class|Aspartate/glutamate/uridylate kinase|CASTOR, ACT domain GO:0004072|GO:0008652|GO:0009089 G3DSA:3.30.70.260|G3DSA:3.40.1160.10|PF00696|PF13840|PIRSF000726|PS00324|SSF53633|SSF55021|TIGR00657 IM40_07185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 IM40_07190 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001247|IPR002381|IPR015847|IPR018336|IPR020568|IPR027408|IPR036345 Exoribonuclease, PH domain 2 superfamily|Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|PNPase/RNase PH domain superfamily|Ribonuclease PH, bacterial-type|Ribonuclease PH, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000049|GO:0008033|GO:0009022 G3DSA:3.30.230.70|MF_00564|PF01138|PF03725|PS01277|SSF54211|SSF55666|TIGR01966 IM40_07195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002571|IPR005104|IPR021153|IPR023120|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Heat-inducible transcription repressor HrcA|Heat-inducible transcription repressor HrcA, C-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily|Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain|Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.390.60|G3DSA:3.30.450.40|MF_00081|PF01628|PF03444|PIRSF005485|SSF46785|SSF55781|TIGR00331 IM40_07200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000740|IPR009012|IPR013805 GrpE nucleotide exchange factor|GrpE nucleotide exchange factor, coiled-coil|GrpE nucleotide exchange factor, head GO:0000774|GO:0006457|GO:0042803|GO:0051087 G3DSA:2.30.22.10|G3DSA:3.90.20.20|MF_01151|PF01025|PR00773|PS01071|SSF51064|SSF58014 IM40_07210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001100|IPR004099|IPR006258|IPR012999|IPR016156|IPR023753|IPR036188 Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004148|GO:0009055|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|SSF51905|SSF55424|TIGR01350 IM40_07215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006255|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|Dihydrolipoamide succinyltransferase|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0004149|GO:0006099|GO:0016746|GO:0045252 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01347 IM40_07220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001017|IPR005475|IPR011603|IPR029061|IPR031717|IPR032106 2-oxoglutarate dehydrogenase E1 component|2-oxoglutarate dehydrogenase E1 component, N-terminal domain|Dehydrogenase, E1 component|Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal|Thiamin diphosphate-binding fold|Transketolase-like, pyrimidine-binding domain GO:0004591|GO:0006099|GO:0016624|GO:0030976|GO:0055114 G3DSA:1.10.287.1150|G3DSA:3.40.50.11610|G3DSA:3.40.50.12470|G3DSA:3.40.50.970|PF00676|PF02779|PF16078|PF16870|PIRSF000157|SM00861|SSF52518|TIGR00239 IM40_07230 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003781|IPR005810|IPR005811|IPR016102|IPR017440|IPR033847|IPR036291 ATP-citrate lyase/succinyl-CoA ligase|ATP-citrate lyase/succinyl-CoA ligase, active site|ATP-citrate lyase/succinyl-CoA ligase, conserved site|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA ligase, alpha subunit|Succinyl-CoA synthetase-like GO:0003824|GO:0048037 G3DSA:3.40.50.261|G3DSA:3.40.50.720|MF_01988|PF00549|PF02629|PIRSF001553|PR01798|PS00399|PS01216|SM00881|SSF51735|SSF52210|TIGR01019 IM40_07235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005809|IPR005811|IPR013650|IPR013815|IPR016102|IPR017866 ATP-citrate lyase/succinyl-CoA ligase|ATP-grasp fold, subdomain 1|ATP-grasp fold, succinyl-CoA synthetase-type|Succinate--CoA synthetase, beta subunit|Succinyl-CoA synthetase, beta subunit, conserved site|Succinyl-CoA synthetase-like GO:0003824|GO:0005524|GO:0006099 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|MF_00558|PF00549|PF08442|PIRSF001554|PS01217|SSF52210|SSF56059|TIGR01016 IM40_07240 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001236|IPR001557|IPR011275|IPR015955|IPR022383|IPR036291 L-lactate/malate dehydrogenase|Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal|Lactate/malate dehydrogenase, C-terminal|Lactate/malate dehydrogenase, N-terminal|Malate dehydrogenase, type 3|NAD(P)-binding domain superfamily GO:0003824|GO:0005975|GO:0016491|GO:0016616|GO:0019752|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.110.10|MF_00487|PF00056|PF02866|PIRSF000102|PR00086|SSF51735|SSF56327|TIGR01763 IM40_07245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003140|IPR029058 Alpha/Beta hydrolase fold|Phospholipase/carboxylesterase/thioesterase GO:0016787 G3DSA:3.40.50.1820|PF02230|SSF53474 IM40_07250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_07260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000440|IPR023043|IPR038430 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid|NADH:ubiquinone oxidoreductase, subunit 3 superfamily|NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0016651|GO:0055114 G3DSA:1.20.58.1610|MF_01394|PF00507 IM40_07265 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006137|IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit|NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0008137|GO:0048038|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.40.50.12280|MF_01356|PF01058|PS01150|SSF56770|TIGR01957 IM40_07270 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001268|IPR010218|IPR020396|IPR037232 NADH dehydrogenase, subunit C|NADH:ubiquinone oxidoreductase, 30kDa subunit|NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily|NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0008137|GO:0016651|GO:0055114 G3DSA:3.30.460.80|MF_01357|PD001581|PF00329|PS00542|SSF143243|TIGR01961 IM40_07275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001135|IPR014029|IPR022885|IPR029014|IPR038290 NAD(P)H-quinone oxidoreductase subunit D/H|NADH-quinone oxidoreductase, subunit D|NADH-quinone oxidoreductase, subunit D superfamily|NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site|[NiFe]-hydrogenase, large subunit GO:0016651|GO:0048038|GO:0051287|GO:0055114 G3DSA:1.10.645.20|MF_01358|PF00346|PS00535|SSF56762|TIGR01962 IM40_07280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002023|IPR036249 NADH-quinone oxidoreductase subunit E-like|Thioredoxin-like superfamily GO:0016491|GO:0055114 G3DSA:1.10.10.1590|G3DSA:3.40.30.10|PF01257|PIRSF000216|PS01099|SSF52833|TIGR01958 IM40_07285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001949|IPR011537|IPR011538|IPR019554|IPR019575|IPR037207|IPR037225 NADH ubiquinone oxidoreductase, F subunit|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Soluble ligand binding domain GO:0008137|GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 G3DSA:1.20.1440.230|G3DSA:3.10.20.600|G3DSA:3.40.50.11540|PF01512|PF10531|PF10589|PS00644|PS00645|SM00928|SSF140490|SSF142019|SSF142984|TIGR01959 IM40_07290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000283|IPR006656|IPR010228|IPR015405|IPR019574|IPR036010 2Fe-2S ferredoxin-like superfamily|Molybdopterin oxidoreductase|NADH-quinone oxidoreductase, chain G, C-terminal|NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site|NADH:ubiquinone oxidoreductase, subunit G|NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0008137|GO:0009055|GO:0016020|GO:0016491|GO:0016651|GO:0042773|GO:0051536|GO:0055114 G3DSA:3.10.20.740|G3DSA:3.30.70.20|G3DSA:3.40.50.740|PF00384|PF09326|PF10588|PF13510|PS00641|PS00642|PS00643|SM00929|SSF53706|SSF54292|SSF54862|TIGR01973 IM40_07295 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001694|IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site|NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 MF_01350|PF00146|PS00667|PS00668 IM40_07300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010226|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 G3DSA:3.30.70.3270|MF_01351|PF12838|PS00198|SSF54862|TIGR01971 IM40_07305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|PR01036|PS00216|SSF103473 IM40_07365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR029084 Immunity protein 30 PF15565 IM40_07375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 IM40_07385 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000644|IPR002550|IPR005170|IPR016169|IPR036318 CBS domain|CNNM, transmembrane domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|SM01091|SSF54631|SSF56176 IM40_07410 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 IM40_07425 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000045|IPR010627 Peptidase A24A, N-terminal|Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PF01478|PF06750 IM40_07430 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC G3DSA:1.10.10.640|G3DSA:3.10.450.50|PF05494 IM40_07440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012336|IPR036249 Thioredoxin-like fold|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF13462|SSF52833 IM40_07445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002908|IPR036524 Frataxin/CyaY|Frataxin/CyaY superfamily GO:0008199|GO:0016226 G3DSA:3.30.920.10|PF01491|SM01219|SSF55387|TIGR03421 IM40_07450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 IM40_07465 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022565 Protein of unknown function DUF2608 PD187055|PF11019 IM40_07470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001278|IPR005148|IPR008909|IPR009080|IPR014729|IPR035684|IPR036695 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Arginine-tRNA ligase|Arginyl tRNA synthetase N-terminal domain|Arginyl tRNA synthetase N-terminal domain superfamily|Arginyl-tRNA synthetase, catalytic core domain|DALR anticodon binding|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0005737|GO:0006418|GO:0006420 G3DSA:1.10.730.10|G3DSA:3.30.1360.70|G3DSA:3.40.50.620|PF00750|PF03485|PF05746|PR01038|SM00836|SM01016|SSF47323|SSF52374|SSF55190|TIGR00456 IM40_07480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010323|IPR011990 Protein of unknown function DUF924|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.20.58.320|G3DSA:1.25.40.10|PF06041|SSF48452 IM40_07500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 G3DSA:3.40.50.200|SSF52743 IM40_07510 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002313|IPR004364|IPR004365|IPR012340|IPR018149 Aminoacyl-tRNA synthetase, class II (D/K/N)|Lysine-tRNA ligase, class II|Lysyl-tRNA synthetase, class II, C-terminal|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0004824|GO:0005524|GO:0005737|GO:0006418|GO:0006430 G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00252|PF00152|PF01336|PR00982|SSF50249|SSF55681|TIGR00499 IM40_07520 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000534|IPR005986|IPR012080|IPR012280|IPR036291 Aspartate-semialdehyde dehydrogenase|Aspartate-semialdehyde dehydrogenase, beta-type|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0004073|GO:0005737|GO:0008652|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0016620|GO:0046983|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_02121|PF01118|PF02774|PIRSF000148|SM00859|SSF51735|SSF55347|TIGR01296 IM40_07525 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_07530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007698|IPR007886|IPR008141|IPR036291 Alanine dehydrogenase|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain|NAD(P)-binding domain superfamily GO:0000286|GO:0042853 G3DSA:3.40.50.720|PF01262|PF05222|PIRSF000183|SM01002|SM01003|SSF51735|SSF52283|TIGR00518 IM40_07535 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010657|IPR017740 ImpA, N-terminal|Type VI secretion system-associated, ImpA PF06812|TIGR03363 IM40_07540 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025743|IPR027417 ImcF-related, N-terminal domain|P-loop containing nucleoside triphosphate hydrolase PF14331|SSF52540 IM40_07550 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010263 Type VI secretion protein, VC_A0114 PF05936 IM40_07560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007730|IPR036680 Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 G3DSA:3.30.70.1070|PF05036|SSF110997 IM40_07565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002139|IPR011611|IPR011877|IPR029056 Carbohydrate kinase PfkB|Ribokinase|Ribokinase-like|Ribokinase/fructokinase GO:0004747|GO:0006014|GO:0016301 G3DSA:3.40.1190.20|MF_01987|PF00294|PR00990|SSF53613 IM40_07575 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001623|IPR036869 Chaperone J-domain superfamily|DnaJ domain G3DSA:1.10.287.110|PF00226|PR00625|SM00271|SSF46565 IM40_07585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000644|IPR002550|IPR005170|IPR016169|IPR036318 CBS domain|CNNM, transmembrane domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|SM01091|SSF54631|SSF56176 IM40_07590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006356|IPR006357|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IIA|HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 G3DSA:3.40.50.1000|PF13242|PF13344|SSF56784|TIGR01459 IM40_07595 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005665|IPR022645|IPR022646|IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 G3DSA:1.20.1640.10|MF_01464_B|PF02355|PF07549|PR01755|SSF82866|TIGR00916|TIGR00966 IM40_07600 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001036|IPR005791|IPR022645|IPR022646|IPR022813 Acriflavin resistance protein|Protein translocase subunit SecD|Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site GO:0006886|GO:0015450|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.1360.200|G3DSA:3.30.70.3400|MF_01463_B|PF02355|PF07549|PR00702|SSF82866|TIGR00916|TIGR01129 IM40_07605 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003849 Preprotein translocase YajC PF02699|PR01853|SM01323|TIGR00739 IM40_07615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002828|IPR030048|IPR036523 SurE-like phosphatase/nucleotidase superfamily|Survival protein SurE|Survival protein SurE-like phosphatase/nucleotidase GO:0008252|GO:0016787 G3DSA:3.40.1210.10|MF_00060|PF01975|SSF64167|TIGR00087 IM40_07620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002314|IPR002317|IPR010978|IPR015866 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Serine-tRNA ligase, type1|Serine-tRNA synthetase, type1, N-terminal GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0005737|GO:0006418|GO:0006434 G3DSA:1.10.287.40|G3DSA:3.30.930.10|MF_00176|PF00587|PF02403|PIRSF001529|PR00981|SSF46589|SSF55681|TIGR00414 IM40_07640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008915 Peptidase M50 GO:0004222|GO:0006508 PF02163 IM40_07645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007730 Sporulation-like domain GO:0042834 PF05036 IM40_07650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000361|IPR016092|IPR017870|IPR035903 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site|HesB-like domain superfamily GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|PF01521|PS01152|SSF89360|TIGR00049 IM40_07655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004808|IPR005135|IPR020847|IPR020848|IPR036691 AP endonuclease 1|AP endonuclease 1, binding site|AP endonuclease 1, conserved site|Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily GO:0003677|GO:0004518|GO:0004519|GO:0005622|GO:0006281 G3DSA:3.60.10.10|PF03372|PS00726|PS00728|SSF56219|TIGR00195|TIGR00633 IM40_07660 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000573|IPR001030|IPR006249|IPR015928|IPR015931|IPR018136|IPR036008 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/Iron-responsive element-binding protein 2 G3DSA:1.10.1440.20|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|PS00450|PS01244|SSF52016|SSF53732|TIGR01341 IM40_07675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_07680 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003507|IPR027461|IPR027478|IPR029062 Class I glutamine amidotransferase-like|LD-carboxypeptidase A, C-terminal domain superfamily|Murein tetrapeptide carboxypeptidase, N-terminal|Peptidase family S66 G3DSA:3.40.50.10740|G3DSA:3.50.30.60|PF02016|PIRSF028757|SSF141986|SSF52317 IM40_07685 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR020531|IPR022565|IPR036412 HAD-like superfamily|Protein of unknown function DUF2608|Uncharacterised protein family, RP296 PD317075|PF11019|SSF56784 IM40_07690 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR011294|IPR020904|IPR036291 3-hydroxybutyrate dehydrogenase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0003858|GO:0016491|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735|TIGR01963 IM40_07695 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001478|IPR004387|IPR008915|IPR036034 PDZ domain|PDZ superfamily|Peptidase M50|Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0005515|GO:0006508|GO:0016021 G3DSA:2.30.42.10|PF02163|SM00228|SSF50156|TIGR00054 IM40_07700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000184|IPR010827|IPR023707 Bacterial surface antigen (D15)|Outer membrane protein assembly factor BamA|POTRA domain, BamA/TamA-like GO:0019867|GO:0071709 G3DSA:2.40.160.50|G3DSA:3.10.20.310|MF_01430|PF01103|PF07244|PIRSF006076|TIGR03303 IM40_07705 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005632|IPR024930 Chaperone protein Skp|Skp domain superfamily GO:0051082 G3DSA:3.30.910.20|PF03938|SM00935|SSF111384 IM40_07710 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001451|IPR007691|IPR011004|IPR020573 Hexapeptide repeat|Trimeric LpxA-like superfamily|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016410|GO:0016747 G3DSA:2.160.10.10|G3DSA:3.40.1390.10|MF_00523|PF00132|PF04613|SSF51161|TIGR01853 IM40_07715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010084|IPR013114|IPR029069 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain superfamily GO:0005737|GO:0006633|GO:0016836 G3DSA:3.10.129.10|MF_00406|PF07977|SSF54637|TIGR01750 IM40_07720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001451|IPR010137|IPR011004|IPR018357|IPR029098|IPR037157 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase|Hexapeptide repeat|Hexapeptide transferase, conserved site|Trimeric LpxA-like superfamily|UDP N-acetylglucosamine O-acyltransferase, C-terminal|UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily GO:0008610|GO:0008780|GO:0016740 G3DSA:1.20.1180.10|G3DSA:2.160.10.10|MF_00387|PF00132|PF13720|PIRSF000456|PS00101|SSF51161|TIGR01852 IM40_07725 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010415 Protein of unknown function DUF1009 G3DSA:3.40.140.80|G3DSA:3.40.50.20|PF06230 IM40_07730 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 MF_00392|PF02684|SSF53756|TIGR00215 IM40_07735 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005496|IPR022369 Integral membrane protein TerC|Integral membrane protein TerC, riboswitch-linked GO:0016021 PF03741|TIGR03718 IM40_07740 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 IM40_07760 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001412|IPR002300|IPR002303|IPR009008|IPR009080|IPR010978|IPR013155|IPR014729|IPR019499|IPR037118 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valine-tRNA ligase|Valyl-tRNA synthetase, tRNA-binding arm|Valyl-tRNA synthetase, tRNA-binding arm superfamily|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004832|GO:0005524|GO:0005737|GO:0006418|GO:0006438 G3DSA:1.10.287.380|G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02004|PF00133|PF08264|PF10458|PR00986|PS00178|SSF46589|SSF47323|SSF50677|SSF52374|TIGR00422 IM40_07765 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000103|IPR005982|IPR008255|IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin reductase GO:0004791|GO:0005737|GO:0016491|GO:0019430|GO:0055114 G3DSA:3.50.50.60|PF07992|PR00368|PR00469|PS00573|SSF51905|TIGR01292 IM40_07785 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PF02308|PR01837 IM40_07790 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001182|IPR011923|IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site|Probable peptidoglycan glycosyltransferase FtsW/RodA|Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021|GO:0051301 MF_02079|PF01098|PS00428|TIGR02210 IM40_07800 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036890 Histidine kinase/HSP90-like ATPase superfamily G3DSA:3.30.565.10|SSF55874 IM40_07805 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|G3DSA:3.40.50.300|PR00364|SSF48452|SSF52540 IM40_07815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|SSF48613 IM40_07820 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|SSF48613 IM40_07825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 G3DSA:1.10.260.40|SSF47413 IM40_07830 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009061 Putative DNA-binding domain superfamily SSF46955 IM40_07865 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309|TIGR02761 IM40_07870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010563 Pilus assembly TraK PF06586 IM40_07885 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014117|IPR025955|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:1.10.8.730|G3DSA:3.40.50.300|PF11130|PF12846|SSF52540|TIGR02746 IM40_07915 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009649 TraU PF06834 IM40_07925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986 IM40_07935 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 IM40_07940 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012931 TraG-like, N-terminal PF07916 IM40_07955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_07960 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_07965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006597|IPR011990|IPR019734 Sel1-like repeat|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13181|SM00671|SSF81901 IM40_07985 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR014262 Extracellular HAF TIGR02913 IM40_08005 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032874 DDE domain PF13610 IM40_08040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036442 ProQ/FinO domain superfamily SSF48657 IM40_08045 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016103|IPR036442 ProQ/FinO domain|ProQ/FinO domain superfamily G3DSA:1.10.1710.10|PF04352|SSF48657 IM40_08050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010985|IPR022789|IPR038296 Antitoxin ParD|Antitoxin ParD superfamily|Ribbon-helix-helix GO:0006355 G3DSA:1.10.8.1250|PF03693|SSF47598|TIGR02606 IM40_08060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022385 Rhs repeat-associated core GO:0097264 G3DSA:2.180.10.10|TIGR03696 IM40_08080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011579|IPR027417 ATPase domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01637|SSF52540 IM40_08105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|PF14659|SSF56349 IM40_08125 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003812|IPR036597 Fido domain|Fido-like domain superfamily G3DSA:1.10.3290.10|PF02661|SSF140931 IM40_08130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR036388|IPR036390 Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF00126|SSF46785 IM40_08150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025188 Domain of unknown function DUF4113 PF13438 IM40_08155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003738|IPR036590 SOS response associated peptidase (SRAP)|SOS response associated peptidase-like G3DSA:3.90.1680.10|PF02586|SSF143081 IM40_08170 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004305|IPR016084 Haem oxygenase-like, multi-helical|Thiaminase-2/PQQC G3DSA:1.20.910.10|PF03070|SSF48613 IM40_08185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_08195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_08210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002052|IPR011639|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Restriction modification methylase Eco57I|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0003824|GO:0006304|GO:0008168|GO:0032259 G3DSA:3.40.50.150|PF07669|PR00507|PS00092|SSF53335 IM40_08215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR006345|IPR010994|IPR027417|IPR027785|IPR029493 AAA+ ATPase domain|DNA helicase, RecD-like|P-loop containing nucleoside triphosphate hydrolase|RecD helicase-like helix-hairpin-helix domain|RuvA domain 2-like|UvrD-like helicase C-terminal domain GO:0003677|GO:0032508|GO:0043141 G3DSA:1.10.10.2220|G3DSA:1.10.150.20|G3DSA:2.30.30.940|G3DSA:3.40.50.300|MF_01488|PF13538|PF13604|PF14490|PF14520|SM00382|SSF47781|SSF52540|TIGR01448 IM40_08220 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016 IM40_08225 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010985|IPR022789|IPR038296 Antitoxin ParD|Antitoxin ParD superfamily|Ribbon-helix-helix GO:0006355 G3DSA:1.10.8.1250|PF03693|SSF47598|TIGR02606 IM40_08250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053|IPR027417 MobA/MobL protein|P-loop containing nucleoside triphosphate hydrolase G3DSA:2.30.30.940|G3DSA:3.30.930.30|G3DSA:3.40.50.300|PF03389|PF13604|SSF52540 IM40_08260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|TIGR02385 IM40_08275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032874 DDE domain PF13610 IM40_08285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 PF01526 IM40_08290 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR036047 F-box domain|F-box-like domain superfamily GO:0005515 SM00256|SSF81383 IM40_08310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|TIGR02385 IM40_08315 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002145|IPR010985 Ribbon-helix-helix|Ribbon-helix-helix protein, CopG GO:0006355 PF01402|SSF47598 IM40_08330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007159|IPR037914 SpoVT-AbrB domain|SpoVT-AbrB domain superfamily GO:0003677 G3DSA:2.10.260.10|PF04014|SM00966|SSF89447|TIGR01439 IM40_08335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 IM40_08345 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_08360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_08365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022565 Protein of unknown function DUF2608 PF11019 IM40_08390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003812|IPR036597 Fido domain|Fido-like domain superfamily PF02661|SSF140931 IM40_08395 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509 IM40_08405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 IM40_08435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_08440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_08460 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic G3DSA:3.30.870.10|SSF56024 IM40_08465 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036442 ProQ/FinO domain superfamily SSF48657 IM40_08470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016103|IPR036442 ProQ/FinO domain|ProQ/FinO domain superfamily G3DSA:1.10.1710.10|PF04352|SSF48657 IM40_08475 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010985|IPR022789|IPR038296 Antitoxin ParD|Antitoxin ParD superfamily|Ribbon-helix-helix GO:0006355 G3DSA:1.10.8.1250|PF03693|SSF47598|TIGR02606 IM40_08480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016 IM40_08485 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003738|IPR036590 SOS response associated peptidase (SRAP)|SOS response associated peptidase-like G3DSA:3.90.1680.10|PF02586|SSF143081 IM40_08495 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic G3DSA:1.10.510.10 IM40_08515 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036047 F-box-like domain superfamily GO:0005515 SSF81383 IM40_08520 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016103 ProQ/FinO domain PF04352 IM40_08525 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_08560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000792|IPR002182|IPR011990|IPR016032|IPR019734|IPR027417|IPR036388 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005515|GO:0006355|GO:0043531 G3DSA:1.10.10.10|G3DSA:1.25.40.10|G3DSA:3.40.50.300|PF00196|PF00931|PF13424|PR00038|PS00622|SM00028|SM00421|SSF46894|SSF48452|SSF52540 IM40_08565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_08595 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004670|IPR023171 Na+/H+ antiporter NhaA|Na/H antiporter domain superfamily GO:0006814|GO:0006885|GO:0016021 G3DSA:1.20.1530.10|PF06965 IM40_08605 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 IM40_08610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001737|IPR011530|IPR020596|IPR020598|IPR023165|IPR029063 Ribosomal RNA adenine dimethylase|Ribosomal RNA adenine methylase transferase, N-terminal|Ribosomal RNA adenine methylase transferase, conserved site|Ribosomal RNA adenine methyltransferase KsgA/Erm|S-adenosyl-L-methionine-dependent methyltransferase|rRNA adenine dimethylase-like GO:0000154|GO:0000179|GO:0006364|GO:0008649 G3DSA:1.10.8.100|G3DSA:3.40.50.150|MF_00607|PF00398|PS01131|SM00650|SSF53335|TIGR00755 IM40_08615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000297|IPR015391|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|SurA N-terminal|Trigger factor/SurA domain superfamily GO:0003755 G3DSA:1.10.4030.10|G3DSA:3.10.50.40|PF00639|PF09312|SSF109998|SSF54534 IM40_08620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005495|IPR030922 LPS export ABC transporter permease LptF|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|TIGR04407 IM40_08625 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005495 Permease LptG/LptF-related GO:0016021 PF03739 IM40_08630 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007543|IPR020889 LPS-assembly protein LptD|Organic solvent tolerance protein, C-terminal GO:0009279|GO:0010033|GO:0015920|GO:0019867|GO:0043165|GO:0061024 MF_01411|PF04453 IM40_08635 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13477|SSF53756 IM40_08640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000056|IPR011060|IPR013785|IPR026019 Aldolase-type TIM barrel|Ribulose-phosphate 3-epimerase|Ribulose-phosphate 3-epimerase-like|Ribulose-phosphate binding barrel GO:0003824|GO:0004750|GO:0005975|GO:0006098|GO:0016857 G3DSA:3.20.20.70|PF00834|PIRSF001461|PS01085|PS01086|SSF51366|TIGR01163 IM40_08650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473 IM40_08660 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004838|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00105|SSF53383 IM40_08665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PF03279 IM40_08670 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003758|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 MF_00409|PF02606|SSF52540|TIGR00682 IM40_08675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007507|IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal|3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily G3DSA:3.40.50.11720|G3DSA:3.40.50.2000|PF04413|SSF53756 IM40_08680 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007172 Domain of unknown function DUF374 PD032436|PF04028 IM40_08685 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 IM40_08710 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006748|IPR011009 Aminoglycoside/hydroxyurea antibiotic resistance kinase|Protein kinase-like domain superfamily GO:0006468|GO:0016773|GO:0019748 G3DSA:3.90.1200.10|PF04655|SSF56112 IM40_08715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006145|IPR006225|IPR020103|IPR036986 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|SSF55120|TIGR00005 IM40_08720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002205|IPR005742|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase IV, subunit A, Gram-negative|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain superfamily|Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_00936|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01062 IM40_08725 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003717|IPR022572|IPR037278 ARFGAP/RecO-like zinc finger|DNA replication/recombination mediator RecO, N-terminal|Recombination protein O, RecO GO:0006281|GO:0006310 MF_00201|PD202328|PF02565|PF11967|SSF57863|TIGR00613 IM40_08730 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_08735 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001189|IPR019831|IPR019832|IPR019833|IPR036314|IPR036324 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, C-terminal domain superfamily|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, N-terminal domain superfamily|Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:1.10.287.990|G3DSA:2.40.500.20|PF00081|PF02777|PIRSF000349|PR01703|PS00088|SSF46609|SSF54719 IM40_08745 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011723 Zinc finger/thioredoxin putative PF13717|TIGR02098 IM40_08750 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001347|IPR004515 Phosphoheptose isomerase|Sugar isomerase (SIS) GO:0005737|GO:0008968|GO:0097367|GO:1901135 G3DSA:3.40.50.10490|MF_00067|PF13580|SSF53697 IM40_08755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002173|IPR004821|IPR011611|IPR011913|IPR011914|IPR014729|IPR023030|IPR029056 Bifunctional protein HldE|Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Cytidyltransferase-like domain|RfaE bifunctional protein, domain I|RfaE bifunctional protein, domain II|Ribokinase-like|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0005975|GO:0009058|GO:0016773|GO:0016779 G3DSA:3.40.1190.20|G3DSA:3.40.50.620|MF_01603|PF00294|PF01467|PS00584|SSF52374|SSF53613|TIGR00125|TIGR02198|TIGR02199 IM40_08760 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002680|IPR038659 Alternative oxidase|Alternative oxidase superfamily GO:0009916|GO:0055114 G3DSA:1.20.1260.140|PF01786|PIRSF005229 IM40_08765 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002763|IPR036520 Protein of unknown function DUF72|UPF0759 superfamily G3DSA:3.20.20.410|PF01904|SSF117396 IM40_08790 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011250|IPR027385 Outer membrane protein beta-barrel|Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF13505|SSF56925 IM40_08810 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000086|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|SSF55811 IM40_08815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1740.10|PF13520 IM40_08825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000792|IPR002182|IPR016032|IPR027417|IPR036388 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0043531 G3DSA:1.10.10.10|G3DSA:3.40.50.300|PF00196|PF00931|PR00038|SM00421|SSF46894|SSF52540 IM40_08830 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13424|SM00028|SSF48452 IM40_08850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 IM40_08870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011652 MORN variant G3DSA:3.90.930.1|PF07661|SSF82185 IM40_08875 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006533|IPR017847|IPR037026 Type VI secretion system, RhsGE-associated Vgr family subset|Type VI secretion system, RhsGE-associated Vgr protein|Vgr protein, OB-fold domain superfamily G3DSA:2.30.110.50|G3DSA:2.40.50.230|G3DSA:3.30.1920.30|G3DSA:3.55.50.10|PF05954|SSF69255|SSF69279|SSF69349|TIGR01646|TIGR03361 IM40_08880 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000813|IPR017896|IPR017900|IPR022569 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin|Ferredoxin, C-terminal GO:0009055 G3DSA:3.30.70.20|PF00037|PF11953|PR00354|PS00198|SSF54862 IM40_08885 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001920|IPR004380|IPR015942 Asp/Glu racemase|Asp/Glu/hydantoin racemase|Aspartate racemase GO:0006520|GO:0006807|GO:0016855|GO:0036361 G3DSA:3.40.50.1860|PF01177|SSF53681|TIGR00035 IM40_08890 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006356|IPR006357|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IIA|HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 G3DSA:3.40.50.1000|PF13242|PF13344|SSF56784|TIGR01459|TIGR01460 IM40_08895 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000760|IPR020550|IPR020583|IPR022337 Inositol monophosphatase, SuhB|Inositol monophosphatase, conserved site|Inositol monophosphatase, metal-binding site|Inositol monophosphatase-like GO:0008934|GO:0046854|GO:0046855 G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PR00377|PR01959|PS00629|PS00630|SSF56655 IM40_08900 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001059|IPR008991|IPR011768|IPR012340|IPR013185|IPR014722|IPR015365|IPR020599 Elongation factor P, C-terminal|Nucleic acid-binding, OB-fold|Ribosomal protein L2, domain 2|Translation elongation factor P|Translation elongation factor P/YeiP|Translation elongation factor P/YeiP, central|Translation elongation factor, KOW-like|Translation protein SH3-like domain superfamily GO:0003746|GO:0005737|GO:0006414|GO:0043043 G3DSA:2.30.30.30|G3DSA:2.40.50.140|MF_00141|PF01132|PF08207|PF09285|PIRSF005901|SM00841|SM01185|SSF50104|SSF50249|TIGR00038 IM40_08925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000185|IPR004027|IPR011115|IPR011116|IPR011130|IPR020937|IPR027417|IPR036266|IPR036670 P-loop containing nucleoside triphosphate hydrolase|Protein translocase subunit SecA|SEC-C motif|SecA DEAD-like, N-terminal|SecA Wing/Scaffold|SecA conserved site|SecA, Wing/Scaffold superfamily|SecA, preprotein cross-linking domain|SecA, preprotein cross-linking domain superfamily GO:0005524|GO:0006605|GO:0006886|GO:0016020|GO:0017038 G3DSA:1.10.3060.10|G3DSA:3.10.450.50|G3DSA:3.40.50.300|G3DSA:3.90.1440.10|MF_01382|PF01043|PF02810|PF07516|PF07517|PR00906|PS01312|SM00957|SM00958|SSF52540|SSF81767|SSF81886|TIGR00963 IM40_08940 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019626 Stress-induced protein, KGG, repeat PF10685 IM40_08950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011697|IPR029062 Class I glutamine amidotransferase-like|Peptidase C26 GO:0016787 G3DSA:3.40.50.880|PF07722|PR00096|SSF52317 IM40_08960 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 IM40_08965 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021959 Protein of unknown function DUF3576 PF12100 IM40_08970 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001412|IPR002300|IPR002302|IPR009008|IPR009080|IPR013155|IPR014729|IPR025709 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Leucine-tRNA ligase|Leucyl-tRNA synthetase, editing domain|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004823|GO:0005524|GO:0006418|GO:0006429 G3DSA:1.10.730.10|G3DSA:3.10.20.590|G3DSA:3.10.330.110|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_00049_B|PF00133|PF08264|PF13603|PR00985|PS00178|SSF47323|SSF50677|SSF52374|TIGR00396 IM40_08975 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 G3DSA:3.30.160.150|PF04390 IM40_08980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001917|IPR004839|IPR010961|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003824|GO:0003870|GO:0009058|GO:0016740|GO:0030170|GO:0033014 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00599|SSF53383|TIGR01821 IM40_08985 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000917|IPR012549|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Phosphoethanolamine transferase, N-terminal|Sulfatase, N-terminal GO:0003824|GO:0008484|GO:0016021 G3DSA:3.40.720.10|PF00884|PF08019|SSF53649 IM40_08990 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000829|IPR036945 DAGK family|Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0008654|GO:0016020|GO:0016301 G3DSA:1.10.3830.10|PF01219 IM40_09005 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003115|IPR004437|IPR036086 ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily GO:0003677 G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF110849|TIGR00180 IM40_09010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 IM40_09015 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003682|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 G3DSA:3.40.50.150|MF_00074|PF02527|PIRSF003078|SSF53335|TIGR00138 IM40_09020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000194|IPR003593|IPR004665|IPR011112|IPR011113|IPR011129|IPR012340|IPR027417|IPR036269 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|Cold shock domain|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Rho termination factor, N-terminal|Rho termination factor, N-terminal domain superfamily|Rho termination factor, RNA-binding domain|Transcription termination factor Rho GO:0003676|GO:0003723|GO:0005524|GO:0006353|GO:0008186 G3DSA:1.10.720.10|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01884|PF00006|PF07497|PF07498|SM00357|SM00382|SM00959|SSF50249|SSF52540|SSF68912|TIGR00767 IM40_09025 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005265 Uncharacterised protein family UPF0093 PF03653|PIRSF004638|TIGR00701 IM40_09030 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001015|IPR019772 Ferrochelatase|Ferrochelatase, active site GO:0004325|GO:0006783 G3DSA:3.40.50.1400|MF_00323|PF00762|PS00534|SSF53800|TIGR00109 IM40_09035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000257|IPR006361|IPR038071 UROD/MetE-like superfamily|Uroporphyrinogen decarboxylase (URO-D)|Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 G3DSA:3.20.20.210|PF01208|PS00907|SSF51726|TIGR01464 IM40_09050 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001977|IPR027417 Dephospho-CoA kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004140|GO:0005524|GO:0015937 G3DSA:3.40.50.300|MF_00376|PF01121|SSF52540|TIGR00152 IM40_09055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006054|IPR006309|IPR012337|IPR013520|IPR036397 DNA polymerase 3, epsilon subunit|DNA polymerase III epsilon subunit, exonuclease domain|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003887|GO:0006260 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098|TIGR00573|TIGR01406 IM40_09060 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003708|IPR035958 Bacterial protein export chaperone SecB|SecB-like superfamily GO:0015031|GO:0051082|GO:0051262 G3DSA:3.10.420.10|MF_00821|PF02556|PR01594|SSF54611|TIGR00809 IM40_09065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007379|IPR032710 NTF2-like domain superfamily|Tim44-like domain G3DSA:3.10.450.240|PF04280|SM00978|SSF54427 IM40_09080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.30.720.110|G3DSA:3.30.720.120|PF00903|SSF54593 IM40_09090 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_09100 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003593|IPR003959|IPR004491|IPR019489|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Heat shock protein HslU|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 G3DSA:1.10.8.60|MF_00249|PF00004|PF07724|PF10431|SM00382|SM01086|SSF52540|TIGR00390 IM40_09105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001353|IPR022281|IPR029055 ATP-dependent protease, HslV subunit|Nucleophile aminohydrolases, N-terminal|Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0006508|GO:0009376|GO:0051603 G3DSA:3.60.20.10|MF_00248|PF00227|PIRSF039093|SSF56235|TIGR03692 IM40_09110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001310|IPR019808|IPR036265 HIT-like superfamily|Histidine triad (HIT) protein|Histidine triad, conserved site G3DSA:3.30.428.10|PF01230|PR00332|PS00892|SSF54197 IM40_09115 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000103|IPR017938|IPR023753|IPR036188|IPR039261 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Pyridine nucleotide-disulphide oxidoreductase, class-II|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|G3DSA:3.50.50.60|PF07992|PR00368|PR00469|SSF51971|SSF52343|SSF63380 IM40_09120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002502|IPR036366|IPR036505 N-acetylmuramoyl-L-alanine amidase domain|N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily|PGBD superfamily GO:0008745|GO:0009253 G3DSA:1.10.101.10|G3DSA:3.40.80.10|PF01510|SM00644|SSF55846 IM40_09150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 IM40_09155 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003509|IPR011335|IPR011856 Restriction endonuclease type II-like|Uncharacterised protein family UPF0102|tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 G3DSA:3.40.1350.10|MF_00048|PF02021|SSF52980 IM40_09165 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004215|IPR004218|IPR006284|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Glutathione synthetase, prokaryotic|Pre-ATP-grasp domain superfamily|Prokaryotic glutathione synthetase, ATP-binding|Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0005524|GO:0005829|GO:0006750 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00162|PF02951|PF02955|SSF52440|SSF56059|TIGR01380 IM40_09175 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000523|IPR001208|IPR003593|IPR004482|IPR014721|IPR020568|IPR025158|IPR027417 AAA+ ATPase domain|MCM domain|Magnesium chelatase ChlI domain|Mg chelatase-related protein|Mg chelatase-related protein, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0003677|GO:0005524|GO:0006270 G3DSA:3.30.230.10|G3DSA:3.40.50.300|PF01078|PF13335|PF13541|PR01657|SM00382|SSF52540|SSF54211|TIGR00368 IM40_09185 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000701|IPR014314|IPR018495|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, cytochrome b subunit, conserved site|Succinate dehydrogenase, cytochrome b556 subunit|Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0000104|GO:0006099|GO:0009055|GO:0016020|GO:0016627|GO:0045281 G3DSA:1.20.1300.10|PF01127|PIRSF000178|PS01000|PS01001|SSF81343|TIGR02970 IM40_09195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003952|IPR003953|IPR011281|IPR014006|IPR015939|IPR027477|IPR036188|IPR037099 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily|Fumarate reductase/succinate dehydrogenase, FAD-binding site|Succinate dehydrogenase, flavoprotein subunit|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily|Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0006099|GO:0016491|GO:0016627|GO:0022900|GO:0050660|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|G3DSA:4.10.80.40|PF00890|PF02910|PIRSF000171|PS00504|SSF46977|SSF51905|SSF56425|TIGR01812|TIGR01816 IM40_09200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004489|IPR006058|IPR009051|IPR012675|IPR017900|IPR025192|IPR036010 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Alpha-helical ferredoxin|Beta-grasp domain superfamily|Succinate dehydogenase/fumarate reductase N-terminal|Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.10.20.30|PF13085|PF13534|PS00197|PS00198|SSF46548|SSF54292|TIGR00384 IM40_09210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002583|IPR036510 Ribosomal protein S20|Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.58.110|MF_00500|PD004231|PF01649|SSF46992|TIGR00029 IM40_09235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018145|IPR027417 CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03135|SSF52540 IM40_09245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PF04610 IM40_09255 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007430|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain superfamily GO:0016020 G3DSA:3.10.450.230|PF04335|SSF54427 IM40_09260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010258|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524 IM40_09265 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.10.1200.160|G3DSA:2.40.128.260|PF03743 IM40_09275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001482|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|SSF52540 IM40_09285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003688|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 G3DSA:3.40.50.300|PF02534|SSF52540 IM40_09300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053|IPR006171|IPR027417|IPR036977 DNA Primase, CHC2-type zinc finger|MobA/MobL protein|P-loop containing nucleoside triphosphate hydrolase|TOPRIM domain GO:0003677|GO:0006260|GO:0008270 G3DSA:2.30.30.940|G3DSA:3.30.930.30|G3DSA:3.40.1360.10|G3DSA:3.40.50.300|G3DSA:3.90.580.10|PF03389|PF13362|PF13604|SSF52540|SSF56731|SSF57783 IM40_09310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 PF06412 IM40_09320 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036930 WGR domain superfamily SSF142921 IM40_09335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006842|IPR010106 Recombination-promoting nuclease RpnA|Transposase (putative), YhgA-like PF04754|TIGR01784 IM40_09340 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C G3DSA:2.10.109.10|PF00717|SSF51306 IM40_09345 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001126|IPR017961|IPR025188|IPR036775 DNA polymerase, Y-family, little finger domain|DNA polymerase, Y-family, little finger domain superfamily|Domain of unknown function DUF4113|UmuC domain GO:0003684|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|SSF100879|SSF56672 IM40_09350 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006597|IPR011990|IPR016181 Acyl-CoA N-acyltransferase|Sel1-like repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|G3DSA:3.40.630.30|PF13374|SM00671|SSF55729|SSF81901 IM40_09360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PF01548 IM40_09365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009362 Protein of unknown function DUF1016 PF06250 IM40_09370 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002513|IPR025296 Domain of unknown function DUF4158|Tn3 transposase DDE domain GO:0004803|GO:0006313 PF01526|PF13700 IM40_09375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 IM40_09385 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001611|IPR006597|IPR011990|IPR032675 Leucine-rich repeat|Leucine-rich repeat domain superfamily|Sel1-like repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|G3DSA:3.80.10.10|PF08238|PF13516|SM00368|SM00671|SSF52047|SSF81901 IM40_09400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF02371 IM40_09425 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001387|IPR010982|IPR013430 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily|Toxin-antitoxin system, antidote protein, HigA GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413|TIGR02607 IM40_09440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_09445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SSF56281 IM40_09450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic SSF81901 IM40_09455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 IM40_09480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012912|IPR024047 MM3350-like superfamily|Plasmid pRiA4b, Orf3 G3DSA:3.10.290.30|PF07929|SSF159941 IM40_09500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036047 F-box-like domain superfamily GO:0005515 SSF81383 IM40_09510 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_09520 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 IM40_09530 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002711|IPR003615|IPR013597 Group II intron, maturase-specific|HNH endonuclease|HNH nuclease GO:0003676|GO:0004519 G3DSA:3.30.40.60|PF01844|PF08388|SM00507 IM40_09545 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007048 GpW/Gp25/anti-adapter protein IraD G3DSA:3.10.450.40|PF04965|SSF160719 IM40_09550 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006949|IPR014507 Baseplate assembly protein J, predicted|Baseplate protein J-like PF04865|PIRSF020481 IM40_09565 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022225 Phage tail fibre protein PF12571|SSF88874 IM40_09570 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR020287|IPR035089 Tail sheath protein, C-terminal domain|Tail sheath protein, subtilisin-like domain PF04984|PF17482 IM40_09575 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006498 Tail tube protein PF04985|TIGR01611 IM40_09580 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019289 Bacteriophage tail protein Gp41, putative PF10109 IM40_09590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009734 Myoviridae, GpU PF06995 IM40_09600 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic PF05954|SSF69279 IM40_09610 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_09615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic PF13384 IM40_09620 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009362 Protein of unknown function DUF1016 PF06250 IM40_09630 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_09635 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SSF56281 IM40_09640 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584|IPR012337 Integrase, catalytic core|Ribonuclease H-like superfamily GO:0015074 PF00665|SSF53098 IM40_09645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 IM40_09665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011009 Protein kinase-like domain superfamily SSF56112 IM40_09675 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000792|IPR002182|IPR011990|IPR016032|IPR019734|IPR027417|IPR036388 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005515|GO:0006355|GO:0043531 G3DSA:1.10.10.10|G3DSA:1.25.40.10|G3DSA:3.40.50.300|PF00196|PF00931|PF13176|PF13374|PF13424|PR00038|PS00622|SM00028|SM00421|SSF46894|SSF48452|SSF52540 IM40_09690 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002559|IPR032806 H repeat-associated protein, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF13808 IM40_09695 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006118|IPR006119|IPR036162 Recombinase, conserved site|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|PS00397|SSF53041 IM40_09700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007159|IPR037914 SpoVT-AbrB domain|SpoVT-AbrB domain superfamily GO:0003677 G3DSA:2.10.260.10|PF04014|SM00966|SSF89447|TIGR01439 IM40_09705 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 IM40_09715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002182|IPR027417 NB-ARC|P-loop containing nucleoside triphosphate hydrolase GO:0043531 G3DSA:3.40.50.300|PF00931|SSF52540 IM40_09730 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001611|IPR016035|IPR032675 Acyl transferase/acyl hydrolase/lysophospholipase|Leucine-rich repeat|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:3.40.1090.10|G3DSA:3.80.10.10|PF13516|SM00368|SSF52047|SSF52151 IM40_09740 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006119|IPR036162 Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|SM00857|SSF53041 IM40_09745 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025296 Domain of unknown function DUF4158 PF13700 IM40_09755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000123|IPR000477|IPR013597|IPR030931 Group II intron reverse transcriptase/maturase|Group II intron, maturase-specific|RNA-directed DNA polymerase (reverse transcriptase), msDNA|Reverse transcriptase domain GO:0003723|GO:0003964|GO:0006278 G3DSA:3.30.70.270|PF00078|PF08388|PR00866|SSF56672|TIGR04416 IM40_09785 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 IM40_09805 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002182|IPR011990|IPR019734|IPR027417 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:0043531 G3DSA:1.25.40.10|G3DSA:3.40.50.300|PF00931|PF13424|SM00028|SSF48452|SSF52540 IM40_09815 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001254|IPR009003 Peptidase S1, PA clan|Serine proteases, trypsin domain GO:0004252|GO:0006508 G3DSA:2.40.10.10|PF00089|SSF50494 IM40_09820 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_09825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002182|IPR027417 NB-ARC|P-loop containing nucleoside triphosphate hydrolase GO:0043531 G3DSA:3.40.50.300|PF00931|PR00364|SSF52540 IM40_09835 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_09850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002586|IPR027417 CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF01656|PIRSF009320|SSF52540 IM40_09890 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_09915 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021739 SaV-like PF11753 IM40_09920 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007159|IPR037914 SpoVT-AbrB domain|SpoVT-AbrB domain superfamily GO:0003677 G3DSA:2.10.260.10|PF04014|SM00966|SSF89447|TIGR01439 IM40_09925 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 IM40_09930 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003497 BRO N-terminal domain PF02498|SM01040 IM40_09950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000719|IPR008271|IPR011009 Protein kinase domain|Protein kinase-like domain superfamily|Serine/threonine-protein kinase, active site GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|PF00069|PS00108|SM00220|SSF56112 IM40_09980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_09990 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|PIRSF009320|SSF52540 IM40_10005 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR024633|IPR038454 DnaA N-terminal domain|DnaA, N-terminal domain superfamily G3DSA:3.30.300.180|PF11638 IM40_10020 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000415|IPR020051|IPR029479 Nitroreductase|Nitroreductase-like|SagB-type dehydrogenase domain GO:0016491 G3DSA:3.40.109.10|PF00881|SSF55469|TIGR03605 IM40_10025 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_10035 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021739 SaV-like PF11753 IM40_10040 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR004305|IPR016084 Haem oxygenase-like, multi-helical|Thiaminase-2/PQQC G3DSA:1.20.910.10|PF03070|SSF48613 IM40_10055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018145|IPR027417 CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03135|SSF52540 IM40_10065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PF04610 IM40_10075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007430|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain superfamily GO:0016020 G3DSA:3.10.450.230|PF04335|SSF54427 IM40_10080 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010258|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524 IM40_10085 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.10.1200.160|G3DSA:2.40.128.260|PF03743 IM40_10095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001482|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|SSF52540 IM40_10120 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR019476|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system coupling protein TraD, DNA-binding domain G3DSA:1.10.8.80|G3DSA:3.40.50.300|PF10412|SSF52540 IM40_10140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053|IPR006171|IPR027417 MobA/MobL protein|P-loop containing nucleoside triphosphate hydrolase|TOPRIM domain G3DSA:2.30.30.940|G3DSA:3.30.930.30|G3DSA:3.40.1360.10|G3DSA:3.40.50.300|PF03389|PF13362|PF13604|SSF52540|SSF56731|SSF57783 IM40_10150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 PF06412 IM40_10160 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008893|IPR036930 WGR domain|WGR domain superfamily PF05406|SSF142921 IM40_10170 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006842|IPR010106 Recombination-promoting nuclease RpnA|Transposase (putative), YhgA-like PF04754|TIGR01784 IM40_10175 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001126|IPR017961|IPR025188 DNA polymerase, Y-family, little finger domain|Domain of unknown function DUF4113|UmuC domain GO:0003684|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|SSF56672 IM40_10180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C G3DSA:2.10.109.10|PF00717|SSF51306 IM40_10190 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_10200 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000792|IPR002182|IPR011990|IPR016032|IPR019734|IPR027417|IPR036388 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005515|GO:0006355|GO:0043531 G3DSA:1.10.10.10|G3DSA:1.25.40.10|G3DSA:3.40.50.300|PF00196|PF00931|PF13424|PR00038|SM00028|SM00421|SSF46894|SSF48452|SSF52540 IM40_10215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_10230 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10245 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006118|IPR006119|IPR006120|IPR009057|IPR036162 Homeobox-like domain superfamily|Recombinase, conserved site|Resolvase, HTH domain|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:1.10.10.60|G3DSA:3.40.50.1390|PF00239|PF02796|PS00397|PS00398|SM00857|SSF46689|SSF53041 IM40_10250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032675 Leucine-rich repeat domain superfamily G3DSA:3.80.10.10|SSF52058 IM40_10260 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032874 DDE domain PF13610 IM40_10280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR032675|IPR036047 F-box domain|F-box-like domain superfamily|Leucine-rich repeat domain superfamily GO:0005515 G3DSA:1.20.1280.50|G3DSA:3.80.10.10|PF12937|SM00256|SSF52047|SSF81383 IM40_10285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10295 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_10300 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR014262|IPR036047 Extracellular HAF|F-box domain|F-box-like domain superfamily GO:0005515 G3DSA:1.20.1280.50|PF12937|SM00256|SSF81383|TIGR02913 IM40_10305 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_10340 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000719|IPR008271|IPR011009 Protein kinase domain|Protein kinase-like domain superfamily|Serine/threonine-protein kinase, active site GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|PF00069|PS00108|SM00220|SSF56112 IM40_10345 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011250|IPR027385 Outer membrane protein beta-barrel|Outer membrane protein/outer membrane enzyme PagP, beta-barrel G3DSA:2.40.160.20|PF13505|SSF56925 IM40_10360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002731 ATPase, BadF/BadG/BcrA/BcrD type G3DSA:3.30.420.40|PF01869|SSF53067 IM40_10395 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001387|IPR010982|IPR013430 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily|Toxin-antitoxin system, antidote protein, HigA GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413|TIGR02607 IM40_10400 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009362|IPR011856 Protein of unknown function DUF1016|tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 G3DSA:3.40.1350.10|PF06250 IM40_10405 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SSF56281 IM40_10410 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_10435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000788|IPR008926|IPR013509 Ribonucleotide reductase R1 subunit, N-terminal|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 G3DSA:3.20.70.20|PF00317|PF02867|PR01183|SSF48168|SSF51998 IM40_10440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000358|IPR009078|IPR012348 Ferritin-like superfamily|Ribonucleotide reductase small subunit family|Ribonucleotide reductase-like GO:0016491|GO:0055114 G3DSA:1.10.620.20|PF00268|PIRSF000355|SSF47240 IM40_10445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR022565|IPR023214 HAD superfamily|Protein of unknown function DUF2608 G3DSA:3.40.50.1000|PD187055|PF11019 IM40_10465 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032874 DDE domain PF13610 IM40_10475 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10495 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_10500 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007712|IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|SSF143011|TIGR02385 IM40_10505 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002145|IPR010985 Ribbon-helix-helix|Ribbon-helix-helix protein, CopG GO:0006355 PF01402|SSF47598 IM40_10515 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10520 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10535 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|SSF48613 IM40_10540 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021739 SaV-like PF11753 IM40_10550 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_10560 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 IM40_10585 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002586|IPR027417 CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF01656|PIRSF009320|SSF52540 IM40_10590 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 IM40_10615 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_10625 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001810|IPR036047 F-box domain|F-box-like domain superfamily GO:0005515 G3DSA:1.20.1280.50|PF12937|SSF81383 IM40_10645 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000126|IPR001254|IPR009003|IPR018114 Peptidase S1, PA clan|Serine proteases, V8 family, serine active site|Serine proteases, trypsin domain|Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508|GO:0008236 G3DSA:2.40.10.10|PF00089|PS00134|PS00673|SSF50494 IM40_10650 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009003|IPR032675 Leucine-rich repeat domain superfamily|Peptidase S1, PA clan G3DSA:2.40.10.10|G3DSA:3.80.10.10|SSF50494|SSF52047 IM40_10655 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006553|IPR032675 Leucine-rich repeat domain superfamily|Leucine-rich repeat, cysteine-containing subtype G3DSA:3.80.10.10|SM00367|SSF52058 IM40_10660 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003477|IPR011067 Plasmid maintenance toxin/Cell growth inhibitor|mRNA interferase PemK-like GO:0003677 G3DSA:2.30.30.110|PF02452|PIRSF033490|SSF50118 IM40_10665 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 IM40_10670 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006118|IPR006119|IPR006120|IPR009057|IPR036162 Homeobox-like domain superfamily|Recombinase, conserved site|Resolvase, HTH domain|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:1.10.10.60|G3DSA:3.40.50.1390|PF00239|PF02796|PS00397|PS00398|SM00857|SSF46689|SSF53041 IM40_10685 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10700 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 IM40_10715 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000792|IPR002182|IPR011990|IPR016032|IPR019734|IPR027417|IPR036388 NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005515|GO:0006355|GO:0043531 G3DSA:1.10.10.10|G3DSA:1.25.40.10|G3DSA:3.40.50.300|PF00196|PF00931|PF13424|PR00038|SM00028|SM00421|SSF46894|SSF48452|SSF52540 IM40_10720 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_10730 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10735 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR026487 Sporadically distributed protein CHP04141 TIGR04141 IM40_10755 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006197|IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C GO:0003677|GO:0006355 G3DSA:2.10.109.10|PF00717|PR00726|SSF51306 IM40_10760 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001126|IPR017961|IPR025188 DNA polymerase, Y-family, little finger domain|Domain of unknown function DUF4113|UmuC domain GO:0003684|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|SSF56672 IM40_10765 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10780 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006442|IPR036165 Type II toxin-antitoxin system, antitoxin Phd/YefM|YefM-like superfamily G3DSA:3.40.1620.10|PF02604|SSF143120|TIGR01552 IM40_10785 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016103|IPR036442 ProQ/FinO domain|ProQ/FinO domain superfamily G3DSA:1.10.1710.10|PF04352|SSF48657 IM40_10800 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009003 Peptidase S1, PA clan G3DSA:2.40.10.10|PF13365|SSF50494 IM40_10820 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 IM40_10825 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584|IPR012337|IPR036397 Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:1.10.10.60|G3DSA:3.30.420.10|PF00665|SSF53098 IM40_10835 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_10840 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10845 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006345|IPR010994|IPR027417|IPR027785|IPR029493 DNA helicase, RecD-like|P-loop containing nucleoside triphosphate hydrolase|RecD helicase-like helix-hairpin-helix domain|RuvA domain 2-like|UvrD-like helicase C-terminal domain GO:0003677|GO:0032508|GO:0043141 G3DSA:1.10.10.2220|G3DSA:1.10.150.20|G3DSA:2.30.30.940|G3DSA:3.40.50.300|MF_01488|PF13538|PF13604|PF14490|PF14520|SSF47781|SSF52540|TIGR01448 IM40_10850 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_10855 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025202 Phospholipase D-like domain G3DSA:3.30.870.10|PF13091|SSF56024 IM40_10865 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 IM40_10870 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012893|IPR017508 HipA, N-terminal subdomain 1|HipA-like, C-terminal G3DSA:1.10.1070.20|PF07804|PF13657|TIGR03071 IM40_10880 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_10905 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR032675 Leucine-rich repeat domain superfamily G3DSA:3.80.10.10|SSF52047 IM40_10950 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002611 IstB-like ATP-binding protein GO:0005524 G3DSA:3.40.50.300|PF01695 IM40_10955 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012912|IPR024047 MM3350-like superfamily|Plasmid pRiA4b, Orf3 G3DSA:3.10.290.30|PF07929|SSF159941 IM40_10975 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C G3DSA:2.10.109.10|PF00717|SSF51306 IM40_10980 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 IM40_10985 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001584|IPR012337|IPR025246|IPR036397 Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily|Transposase IS30-like HTH domain GO:0003676|GO:0015074 G3DSA:1.10.10.60|G3DSA:3.30.420.10|PF00665|PF13936|SSF53098 IM40_10995 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_11005 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011579|IPR027417 ATPase domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01637|SSF52540 IM40_11010 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001387|IPR010982|IPR013430 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily|Toxin-antitoxin system, antidote protein, HigA GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413|TIGR02607 IM40_11045 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053|IPR006171|IPR027417|IPR036977 DNA Primase, CHC2-type zinc finger|MobA/MobL protein|P-loop containing nucleoside triphosphate hydrolase|TOPRIM domain GO:0003677|GO:0006260|GO:0008270 G3DSA:2.30.30.940|G3DSA:3.30.930.30|G3DSA:3.40.1360.10|G3DSA:3.40.50.300|G3DSA:3.90.580.10|PF03389|PF13362|PF13604|SSF52540|SSF57783 IM40_11055 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 PF06412 IM40_11065 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR008893|IPR036930 WGR domain|WGR domain superfamily PF05406|SSF142921 IM40_11070 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_11075 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic G3DSA:2.170.15.10|SSF56973 IM40_11095 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007211 Protein of unknown function DUF378 PF04070 IM40_11105 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_11110 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 IM40_11115 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_11130 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025668 Transposase DDE domain PF13612|PF13737 IM40_11140 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001294|IPR003018|IPR003594|IPR003661|IPR013515|IPR013654|IPR029016|IPR035965|IPR036097|IPR036890 GAF domain|GAF-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|PAS fold-2|Phytochrome|Phytochrome, central region|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0005515|GO:0006355|GO:0007165|GO:0009584|GO:0018298 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.450.270|G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF00360|PF00512|PF01590|PF02518|PF08446|PR01033|SM00065|SM00387|SM00388|SSF47384|SSF55781|SSF55785|SSF55874 IM40_11150 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025668 Transposase DDE domain PF13612 IM40_11180 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000123|IPR000477|IPR013597|IPR030931 Group II intron reverse transcriptase/maturase|Group II intron, maturase-specific|RNA-directed DNA polymerase (reverse transcriptase), msDNA|Reverse transcriptase domain GO:0003723|GO:0003964|GO:0006278 G3DSA:3.30.70.270|PF00078|PF08388|PR00866|SSF56672|TIGR04416 IM40_11195 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR001482|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|SSF52540 IM40_11205 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.10.1200.160|G3DSA:2.40.128.260|PF03743 IM40_11210 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR010258|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524 IM40_11215 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007430|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain superfamily GO:0016020 G3DSA:3.10.450.230|PF04335|SSF54427 IM40_11225 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PF04610 IM40_11235 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR018145|IPR027417 CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03135|SSF52540 IM40_11250 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10|SSF48613 IM40_11255 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR021739 SaV-like PF11753 IM40_11275 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 IM40_11280 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000415|IPR020051|IPR029479 Nitroreductase|Nitroreductase-like|SagB-type dehydrogenase domain GO:0016491 G3DSA:3.40.109.10|PF00881|SSF55469|TIGR03605 IM40_11285 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 IM40_11310 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 IM40_11320 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 IM40_11330 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006915|IPR028948 Bacterial toxin 28|Domain of unknown function DUF637, haemagglutinin putative PF04830|PF15605 IM40_11335 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016024 Armadillo-type fold SSF48371 IM40_11360 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002625|IPR036063 Smr domain|Smr domain superfamily G3DSA:3.30.1370.110|PF01713|SSF160443 IM40_11365 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002625|IPR036063 Smr domain|Smr domain superfamily G3DSA:3.30.1370.110|PF01713|SSF160443 IM40_11375 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 IM40_11380 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006442|IPR036165 Type II toxin-antitoxin system, antitoxin Phd/YefM|YefM-like superfamily G3DSA:3.40.1620.10|PF02604|SSF143120|TIGR01552 IM40_11390 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_11415 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_11420 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF01850|SSF88723 IM40_11425 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR007159|IPR037914 SpoVT-AbrB domain|SpoVT-AbrB domain superfamily GO:0003677 G3DSA:2.10.260.10|PF04014|SM00966|SSF89447|TIGR01439 IM40_11430 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR012337|IPR032874 DDE domain|Ribonuclease H-like superfamily PF13610|SSF53098 IM40_11435 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF81901 IM40_11440 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR002525|IPR003346 Transposase, IS111A/IS1328/IS1533, N-terminal|Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PF01548|PF02371 IM40_11445 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR025188 Domain of unknown function DUF4113 PF13438 IM40_11450 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR006842|IPR010106 Recombination-promoting nuclease RpnA|Transposase (putative), YhgA-like PF04754|TIGR01784 IM40_11455 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR016103|IPR036442 ProQ/FinO domain|ProQ/FinO domain superfamily G3DSA:1.10.1710.10|PF04352|SM00945|SSF48657 IM40_11460 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053 MobA/MobL protein G3DSA:3.30.930.30|PF03389 IM40_11470 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 PF06412 IM40_11480 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR005053|IPR006171|IPR027417 MobA/MobL protein|P-loop containing nucleoside triphosphate hydrolase|TOPRIM domain G3DSA:2.30.30.940|G3DSA:3.30.930.30|G3DSA:3.40.1360.10|G3DSA:3.40.50.300|PF03389|PF13362|PF13604|SSF52540|SSF56731|SSF57783 IM40_11485 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR039555 F plasmid transfer operon protein PF13728 IM40_11490 /data/g2d_mirror_genbank/Candidatus_Paracaedimonas_acanthamoebae_30173/ASM74303v1_genomic IPR003688|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 G3DSA:3.40.50.300|PF02534|SSF52540