Rmag_0001 SM00382 ATPases associated with a variety of cellular activities Rmag_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Rmag_0002 SM00480 DNA polymerase III beta subunit Rmag_0003 SM00387 Histidine kinase-like ATPases Rmag_0003 SM00433 TopoisomeraseII Rmag_0013 SM00957 SecA DEAD-like domain Rmag_0013 SM00958 SecA preprotein cross-linking domain Rmag_0016 SM00904 Riboflavin kinase Rmag_0043 SM00843 Rmag_0043 Rmag_0046 SM00732 Likely ribonuclease with RNase H fold. Rmag_0053 SM00316 Ribosomal protein S1-like RNA-binding domain Rmag_0053 SM00322 K homology RNA-binding domain Rmag_0057 SM01209 Rmag_0057 Rmag_0057 SM01210 Rmag_0057 Rmag_0062 SM00861 Transketolase, pyrimidine binding domain Rmag_0063 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Rmag_0068 SM01228 Rmag_0068 Rmag_0077 SM00382 ATPases associated with a variety of cellular activities Rmag_0078 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Rmag_0078 SM00474 3'-5' exonuclease Rmag_0078 SM00475 5'-3' exonuclease Rmag_0078 SM00482 DNA polymerase A domain Rmag_0079 SM00836 DALR anticodon binding domain Rmag_0079 SM01016 Arginyl tRNA synthetase N terminal dom Rmag_0097 SM00840 Rmag_0097 Rmag_0099 SM01329 Rmag_0099 Rmag_0104 SM01103 Rmag_0104 Rmag_0109 SM01400 Rmag_0109 Rmag_0111 SM00479 Rmag_0111 Rmag_0113 SM01011 Aminopeptidase P, N-terminal domain Rmag_0120 SM00487 DEAD-like helicases superfamily Rmag_0120 SM00490 helicase superfamily c-terminal domain Rmag_0122 SM00977 TilS substrate C-terminal domain Rmag_0127 SM00487 DEAD-like helicases superfamily Rmag_0127 SM00490 helicase superfamily c-terminal domain Rmag_0132 SM00363 S4 RNA-binding domain Rmag_0136 SM00382 ATPases associated with a variety of cellular activities Rmag_0143 SM00900 Rmag_0143 Rmag_0145 SM00881 CoA binding domain Rmag_0147 SM00841 Elongation factor P, C-terminal Rmag_0147 SM01185 Rmag_0147 Rmag_0149 SM00671 Sel1-like repeats. Rmag_0158 SM00116 Domain in cystathionine beta-synthase and other proteins. Rmag_0159 SM00226 Low molecular weight phosphatase family Rmag_0162 SM00838 Elongation factor G C-terminus Rmag_0162 SM00889 Elongation factor G, domain IV Rmag_0164 SM01403 Rmag_0164 Rmag_0168 SM01382 Rmag_0168 Rmag_0168 SM01383 Rmag_0168 Rmag_0171 SM00322 K homology RNA-binding domain Rmag_0175 SM01374 Rmag_0175 Rmag_0176 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Rmag_0189 SM00363 S4 RNA-binding domain Rmag_0189 SM01390 Rmag_0189 Rmag_0190 SM00662 RNA polymerases D Rmag_0206 SM00382 ATPases associated with a variety of cellular activities Rmag_0206 SM00994 ClpX C4-type zinc finger Rmag_0206 SM01086 C-terminal, D2-small domain, of ClpB protein Rmag_0208 SM00382 ATPases associated with a variety of cellular activities Rmag_0208 SM00464 Found in ATP-dependent protease La (LON) Rmag_0214 SM00116 Domain in cystathionine beta-synthase and other proteins. Rmag_0215 SM00938 Nitrogen regulatory protein P-II Rmag_0242 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Rmag_0243 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Rmag_0255 SM00382 ATPases associated with a variety of cellular activities Rmag_0273 SM00028 Tetratricopeptide repeats Rmag_0276 SM00938 Nitrogen regulatory protein P-II Rmag_0278 SM01130 Rmag_0278 Rmag_0280 SM00532 Ligase N family Rmag_0281 SM00938 Nitrogen regulatory protein P-II Rmag_0283 SM00116 Domain in cystathionine beta-synthase and other proteins. Rmag_0284 SM01012 Rmag_0284 Rmag_0292 SM00937 Rmag_0292 Rmag_0293 SM01387 Rmag_0293 Rmag_0295 SM00400 zinc finger Rmag_0295 SM00493 Rmag_0295 Rmag_0302 SM00434 DNA Topoisomerase IV Rmag_0306 SM00434 DNA Topoisomerase IV Rmag_0316 SM00450 Rhodanese Homology Domain Rmag_0328 SM00849 Metallo-beta-lactamase superfamily Rmag_0332 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Rmag_0332 SM01232 Rmag_0332 Rmag_0339 SM00363 S4 RNA-binding domain Rmag_0345 SM00845 GatB domain Rmag_0350 SM01091 Transporter associated domain Rmag_0351 SM01192 Rmag_0351 Rmag_0351 SM01193 Rmag_0351 Rmag_0352 SM00271 DnaJ molecular chaperone homology domain Rmag_0361 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Rmag_0361 SM00387 Histidine kinase-like ATPases Rmag_0361 SM00388 His Kinase A (phosphoacceptor) domain Rmag_0362 SM00448 cheY-homologous receiver domain Rmag_0365 SM00487 DEAD-like helicases superfamily Rmag_0365 SM00488 Rmag_0365 Rmag_0365 SM00491 Rmag_0365 Rmag_0380 SM00411 bacterial (prokaryotic) histone like domain Rmag_0381 SM00562 Rmag_0381 Rmag_0386 SM00861 Transketolase, pyrimidine binding domain Rmag_0392 SM01211 Rmag_0392 Rmag_0404 SM00479 Rmag_0404 Rmag_0405 SM01409 Rmag_0405 Rmag_0409 SM01004 Delta-aminolevulinic acid dehydratase Rmag_0423 SM01329 Rmag_0423 Rmag_0426 SM00487 DEAD-like helicases superfamily Rmag_0426 SM00490 helicase superfamily c-terminal domain Rmag_0432 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Rmag_0436 SM00316 Ribosomal protein S1-like RNA-binding domain Rmag_0443 SM00842 Cell division protein FtsA Rmag_0449 SM00917 LeuA allosteric (dimerisation) domain Rmag_0455 SM00924 MgtE intracellular N domain Rmag_0461 SM00316 Ribosomal protein S1-like RNA-binding domain Rmag_0461 SM00322 K homology RNA-binding domain Rmag_0462 SM00116 Domain in cystathionine beta-synthase and other proteins. Rmag_0462 SM01240 Rmag_0462 Rmag_0466 SM00382 ATPases associated with a variety of cellular activities Rmag_0470 SM00936 Penicillin-binding protein 5, C-terminal domain Rmag_0473 SM00671 Sel1-like repeats. Rmag_0475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Rmag_0477 SM00357 Cold shock protein domain Rmag_0477 SM00382 ATPases associated with a variety of cellular activities Rmag_0477 SM00959 Rho termination factor, N-terminal domain Rmag_0487 SM00563 Phosphate acyltransferases Rmag_0493 SM00387 Histidine kinase-like ATPases Rmag_0498 SM01230 Rmag_0498 Rmag_0499 SM00729 Elongator protein 3, MiaB family, Radical SAM Rmag_0499 SM00876 Biotin and Thiamin Synthesis associated domain Rmag_0502 SM00382 ATPases associated with a variety of cellular activities Rmag_0513 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Rmag_0513 SM00954 Region found in RelA / SpoT proteins Rmag_0527 SM00479 Rmag_0527 Rmag_0530 SM00316 Ribosomal protein S1-like RNA-binding domain Rmag_0530 SM00357 Cold shock protein domain Rmag_0530 SM00955 Rmag_0530 Rmag_0531 SM00788 Adenylosuccinate synthetase Rmag_0533 SM00244 prohibitin homologues Rmag_0534 SM00244 prohibitin homologues Rmag_0537 SM00967 RNA 2'-O ribose methyltransferase substrate binding Rmag_0543 SM00729 Elongator protein 3, MiaB family, Radical SAM Rmag_0547 SM00650 Ribosomal RNA adenine dimethylases Rmag_0552 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Rmag_0559 SM00072 Guanylate kinase homologues. Rmag_0561 SM00883 Chaperonin 10 Kd subunit Rmag_0563 SM00387 Histidine kinase-like ATPases Rmag_0563 SM00433 TopoisomeraseII Rmag_0566 SM00825 Beta-ketoacyl synthase Rmag_0591 SM00411 bacterial (prokaryotic) histone like domain Rmag_0592 SM00316 Ribosomal protein S1-like RNA-binding domain Rmag_0596 SM00382 ATPases associated with a variety of cellular activities Rmag_0598 SM00465 GIY-YIG type nucleases (URI domain) Rmag_0604 SM00382 ATPases associated with a variety of cellular activities Rmag_0604 SM00962 SRP54-type protein, GTPase domain Rmag_0604 SM00963 SRP54-type protein, helical bundle domain Rmag_0614 SM00358 Double-stranded RNA binding motif Rmag_0614 SM00535 Ribonuclease III family Rmag_0618 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Rmag_0620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Rmag_0620 SM00245 tail specific protease Rmag_0626 SM00830 Chorismate mutase type II Rmag_0641 SM00411 bacterial (prokaryotic) histone like domain Rmag_0642 SM00873 B3/4 domain Rmag_0642 SM00874 tRNA synthetase B5 domain Rmag_0642 SM00896 Ferredoxin-fold anticodon binding domain Rmag_0648 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Rmag_0668 SM01005 Alanine racemase, C-terminal domain Rmag_0676 SM00382 ATPases associated with a variety of cellular activities Rmag_0680 SM00357 Cold shock protein domain Rmag_0683 SM00986 Uracil DNA glycosylase superfamily Rmag_0683 SM00987 UreE urease accessory protein, C-terminal domain Rmag_0685 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Rmag_0686 SM00220 Serine/Threonine protein kinases, catalytic domain Rmag_0686 SM00331 Sigma factor PP2C-like phosphatases Rmag_0686 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Rmag_0691 SM00852 Probable molybdopterin binding domain Rmag_0693 SM00729 Elongator protein 3, MiaB family, Radical SAM Rmag_0698 SM00852 Probable molybdopterin binding domain Rmag_0699 SM00327 von Willebrand factor (vWF) type A domain Rmag_0700 SM00382 ATPases associated with a variety of cellular activities Rmag_0707 SM00382 ATPases associated with a variety of cellular activities Rmag_0731 SM00937 Rmag_0731 Rmag_0736 SM00382 ATPases associated with a variety of cellular activities Rmag_0739 SM00996 S-adenosyl-L-homocysteine hydrolase Rmag_0739 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Rmag_0743 SM00729 Elongator protein 3, MiaB family, Radical SAM Rmag_0762 SM00257 Lysin motif Rmag_0781 SM00382 ATPases associated with a variety of cellular activities Rmag_0781 SM00962 SRP54-type protein, GTPase domain Rmag_0781 SM00963 SRP54-type protein, helical bundle domain Rmag_0787 SM00382 ATPases associated with a variety of cellular activities Rmag_0787 SM01086 C-terminal, D2-small domain, of ClpB protein Rmag_0799 SM00382 ATPases associated with a variety of cellular activities Rmag_0803 SM00481 DNA polymerase alpha chain like domain Rmag_0810 SM00663 RNA polymerase I subunit A N-terminus Rmag_0815 SM00649 Ribosomal protein L11/L12 Rmag_0816 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Rmag_0819 SM00919 Malic enzyme, NAD binding domain Rmag_0819 SM01274 Rmag_0819 Rmag_0826 SM00849 Metallo-beta-lactamase superfamily Rmag_0837 SM01001 AIR carboxylase Rmag_0845 SM00382 ATPases associated with a variety of cellular activities Rmag_0850 SM00316 Ribosomal protein S1-like RNA-binding domain Rmag_0875 SM00851 MGS-like domain Rmag_0875 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Rmag_0877 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Rmag_0882 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Rmag_0911 SM00382 ATPases associated with a variety of cellular activities Rmag_0911 SM01086 C-terminal, D2-small domain, of ClpB protein Rmag_0916 SM00822 Rmag_0916 Rmag_0917 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Rmag_0922 SM00955 Rmag_0922 Rmag_0928 SM00487 DEAD-like helicases superfamily Rmag_0928 SM00490 helicase superfamily c-terminal domain Rmag_0932 SM00450 Rhodanese Homology Domain Rmag_0942 SM00487 DEAD-like helicases superfamily Rmag_0942 SM00490 helicase superfamily c-terminal domain Rmag_0944 SM00357 Cold shock protein domain Rmag_0946 SM00479 Rmag_0946 Rmag_0947 SM00478 endonuclease III Rmag_0947 SM00525 Rmag_0947 Rmag_0951 SM00859 Semialdehyde dehydrogenase, NAD binding domain Rmag_0957 SM00905 Dihydroneopterin aldolase Rmag_0958 SM01207 Rmag_0958 Rmag_0961 SM00382 ATPases associated with a variety of cellular activities Rmag_0969 SM00798 AICARFT/IMPCHase bienzyme Rmag_0969 SM00851 MGS-like domain Rmag_0975 SM00116 Domain in cystathionine beta-synthase and other proteins. Rmag_0975 SM01091 Transporter associated domain Rmag_0981 SM00382 ATPases associated with a variety of cellular activities Rmag_0988 SM00947 Carbonic anhydrase Rmag_1004 SM00825 Beta-ketoacyl synthase Rmag_1007 SM01323 Rmag_1007 Rmag_1009 SM00450 Rhodanese Homology Domain Rmag_1011 SM00450 Rhodanese Homology Domain Rmag_1012 SM00421 helix_turn_helix, Lux Regulon Rmag_1012 SM00448 cheY-homologous receiver domain Rmag_1013 SM00387 Histidine kinase-like ATPases Rmag_1021 SM00487 DEAD-like helicases superfamily Rmag_1021 SM00490 helicase superfamily c-terminal domain Rmag_1021 SM00982 Rmag_1021 Rmag_1021 SM01058 CarD-like/TRCF domain Rmag_1034 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Rmag_1034 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Rmag_1034 SM00493 Rmag_1034 Rmag_1039 SM01234 Rmag_1039 Rmag_1042 SM00644 Rmag_1042 Rmag_1045 SM00382 ATPases associated with a variety of cellular activities Rmag_1060 SM00878 Biotin carboxylase C-terminal domain Rmag_1061 SM00859 Semialdehyde dehydrogenase, NAD binding domain