locus-tag	class	description
A6E34_00055	COG1560	Kdo2-lipid A biosynthetic process
A6E34_00065	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
A6E34_00070	COG1271	oxidase subunit
A6E34_00075	COG1294	oxidase, subunit
A6E34_00080	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
A6E34_00110	COG0681	Belongs to the peptidase S26 family
A6E34_00135	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
A6E34_00175	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
A6E34_00260	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
A6E34_00280	COG0635	Involved in the biosynthesis of porphyrin-containing compound
A6E34_00295	COG0508	dehydrogenase complex catalyzes the overall conversion of
A6E34_00315	COG0633	Ferredoxin
A6E34_00325	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
A6E34_00330	COG1191	sigma factor activity
A6E34_00475	COG4789	Type iii secretion
A6E34_00480	COG4792	protein secretion
A6E34_00485	COG0012	GTP binding
A6E34_00490	COG0196	riboflavin kinase activity
A6E34_00510	COG0195	Participates in both transcription termination and antitermination
A6E34_00545	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
A6E34_00555	COG0564	pseudouridine synthase activity
A6E34_00580	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
A6E34_00585	COG1164	Oligoendopeptidase f
A6E34_00645	COG0439	Biotin carboxylase
A6E34_00655	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A6E34_00675	COG1126	abc transporter atp-binding protein
A6E34_00720	COG4166	transmembrane transport
A6E34_00730	COG3012	SEC-C Motif Domain Protein
A6E34_00730	COG3318	Belongs to the UPF0149 family
A6E34_00775	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
A6E34_00795	COG1136	(ABC) transporter
A6E34_00915	COG4166	transmembrane transport
A6E34_00940	COG1116	anion transmembrane transporter activity
A6E34_00975	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
A6E34_00985	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
A6E34_01020	COG2239	Acts as a magnesium transporter
A6E34_01040	COG4166	transmembrane transport
A6E34_01045	COG0601	transmembrane transport
A6E34_01050	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
A6E34_01055	COG0444	Belongs to the ABC transporter superfamily
A6E34_01060	COG4608	Belongs to the ABC transporter superfamily
A6E34_01070	COG0471	metal ion transport
A6E34_01075	COG0205	6-phosphofructokinase activity
A6E34_01140	COG0531	amino acid
A6E34_01145	COG0037	tRNA processing
A6E34_01155	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
A6E34_01165	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
A6E34_01230	COG0733	neurotransmitter:sodium symporter activity
A6E34_01265	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
A6E34_01280	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
A6E34_01300	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
A6E34_01305	COG0022	dehydrogenase e1 component
A6E34_01305	COG0508	dehydrogenase complex catalyzes the overall conversion of
A6E34_01310	COG0508	dehydrogenase complex catalyzes the overall conversion of
A6E34_01345	COG1266	CAAX protease self-immunity
A6E34_01360	COG4536	flavin adenine dinucleotide binding
A6E34_01370	COG1104	cysteine desulfurase activity
A6E34_01375	COG0631	protein serine/threonine phosphatase activity
A6E34_01385	COG2176	DNA-directed DNA polymerase activity
A6E34_01390	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
A6E34_01400	COG1132	(ABC) transporter
A6E34_01415	COG0776	regulation of translation
A6E34_01420	COG0860	N-Acetylmuramoyl-L-alanine amidase
A6E34_01430	COG0768	penicillin binding
A6E34_01500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
A6E34_01530	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
A6E34_01535	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
A6E34_01545	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
A6E34_01555	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
A6E34_01705	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
A6E34_01715	COG2166	iron-sulfur cluster assembly
A6E34_01785	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
A6E34_01820	COG0022	dehydrogenase e1 component
A6E34_01830	COG0828	Belongs to the bacterial ribosomal protein bS21 family
A6E34_01835	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
A6E34_01860	COG0488	(ABC) transporter
A6E34_01900	COG1331	Highly conserved protein containing a thioredoxin domain
A6E34_02025	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
A6E34_02030	COG0321	lipoyl(octanoyl) transferase activity
A6E34_02030	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
A6E34_02040	COG1605	Chorismate mutase
A6E34_02040	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
A6E34_02140	COG0508	dehydrogenase complex catalyzes the overall conversion of
A6E34_02145	COG1301	dicarboxylic acid transport
A6E34_02155	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
A6E34_02175	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
A6E34_02185	COG1115	amino acid carrier protein
A6E34_02190	COG0617	tRNA 3'-terminal CCA addition
A6E34_02240	COG0211	Belongs to the bacterial ribosomal protein bL27 family
A6E34_02280	COG1366	Belongs to the anti-sigma-factor antagonist family
A6E34_02290	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
A6E34_02335	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
A6E34_02340	COG0051	transcription antitermination factor activity, RNA binding
A6E34_02355	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
A6E34_02365	COG0793	Belongs to the peptidase S41A family
A6E34_02375	COG1361	Conserved repeat domain
A6E34_02400	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
A6E34_02405	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
A6E34_02405	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
A6E34_02435	COG0318	PFAM AMP-dependent synthetase and ligase
A6E34_02435	COG0204	Acyl-transferase
A6E34_02460	COG1247	-acetyltransferase
A6E34_02490	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
A6E34_02510	COG4191	Histidine kinase
A6E34_02580	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
A6E34_02585	COG0601	transmembrane transport
A6E34_02630	COG0742	ribosomal rna small subunit methyltransferase
A6E34_02640	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
A6E34_02650	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
A6E34_02660	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
A6E34_02660	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
A6E34_02665	COG0616	signal peptide processing
A6E34_02675	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
A6E34_02690	COG0305	Participates in initiation and elongation during chromosome replication
A6E34_02770	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
A6E34_02795	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
A6E34_02815	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
A6E34_02830	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
A6E34_02890	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
A6E34_02915	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
A6E34_02970	COG1686	Belongs to the peptidase S11 family
A6E34_02990	COG1114	Component of the transport system for branched-chain amino acids
A6E34_03040	COG4794	Type iii secretion
A6E34_03075	COG1459	type II secretion system
A6E34_03185	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
A6E34_03205	COG0084	hydrolase, TatD family'
A6E34_03215	COG0811	peptide transport
A6E34_03235	COG2885	chlorophyll binding
A6E34_03240	COG1388	LysM domain
A6E34_03240	COG4641	Protein conserved in bacteria
A6E34_03250	COG0450	alkyl hydroperoxide reductase
A6E34_03260	COG0459	protein refolding
A6E34_03265	COG3876	Protein conserved in bacteria
A6E34_03285	COG0210	DNA helicase
A6E34_03290	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
A6E34_03385	COG0142	geranyltranstransferase activity
A6E34_03390	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
A6E34_03460	COG2814	Major facilitator Superfamily
A6E34_03470	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
A6E34_03475	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
A6E34_03500	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
A6E34_03515	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
A6E34_03555	COG0564	pseudouridine synthase activity
A6E34_03630	COG2815	serine threonine protein kinase
A6E34_03630	COG0515	serine threonine protein kinase
A6E34_03695	COG0768	penicillin binding
A6E34_03705	COG0719	Fe-S assembly protein
A6E34_03710	COG0396	ATPase activity
A6E34_03715	COG0719	Fe-S assembly protein
A6E34_03730	COG4608	Belongs to the ABC transporter superfamily
A6E34_03735	COG0444	Belongs to the ABC transporter superfamily
A6E34_03770	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
A6E34_03835	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
A6E34_03840	COG1077	Cell shape determining protein MreB Mrl
A6E34_03870	COG4284	Utp--glucose-1-phosphate uridylyltransferase
A6E34_03880	COG1157	protein secretion by the type III secretion system
A6E34_03910	COG1187	pseudouridine synthase activity
A6E34_03920	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
A6E34_03920	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
A6E34_03925	COG0772	Belongs to the SEDS family
A6E34_03970	COG1115	amino acid carrier protein
A6E34_03985	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
A6E34_04050	COG0635	Involved in the biosynthesis of porphyrin-containing compound
A6E34_04060	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
A6E34_04090	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
A6E34_04115	COG0459	protein refolding
A6E34_04125	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
A6E34_04145	COG0772	Belongs to the SEDS family
A6E34_04160	COG1837	Belongs to the UPF0109 family
A6E34_04170	COG1366	Belongs to the anti-sigma-factor antagonist family
A6E34_04180	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
A6E34_04190	COG0799	negative regulation of ribosome biogenesis
A6E34_04195	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
A6E34_04220	COG1218	3'(2'),5'-bisphosphate nucleotidase
A6E34_04250	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
A6E34_04265	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
A6E34_04280	COG0257	Belongs to the bacterial ribosomal protein bL36 family
A6E34_04395	COG1025	Belongs to the peptidase M16 family
A6E34_04405	COG1530	ribonuclease E activity
A6E34_04460	COG0814	amino acid
A6E34_04465	COG0814	amino acid
A6E34_04475	COG0552	protein localization to endoplasmic reticulum
A6E34_04485	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
A6E34_04530	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
A6E34_04550	COG0291	Belongs to the bacterial ribosomal protein bL35 family
A6E34_04600	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
A6E34_04660	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
A6E34_04670	COG0659	secondary active sulfate transmembrane transporter activity