Chro_0001 SM00382 ATPases associated with a variety of cellular activities Chro_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Chro_0012 SM00028 Tetratricopeptide repeats Chro_0012 SM00138 Methyltransferase, chemotaxis proteins Chro_0014 SM00448 cheY-homologous receiver domain Chro_0015 SM00260 Two component signalling adaptor domain Chro_0016 SM00073 Histidine Phosphotransfer domain Chro_0016 SM00260 Two component signalling adaptor domain Chro_0016 SM00387 Histidine kinase-like ATPases Chro_0016 SM00448 cheY-homologous receiver domain Chro_0016 SM01231 Chro_0016 Chro_0017 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_0018 SM00448 cheY-homologous receiver domain Chro_0019 SM00448 cheY-homologous receiver domain Chro_0027 SM00382 ATPases associated with a variety of cellular activities Chro_0034 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Chro_0037 SM00899 Chro_0037 Chro_0043 SM00830 Chorismate mutase type II Chro_0066 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_0066 SM00387 Histidine kinase-like ATPases Chro_0066 SM00388 His Kinase A (phosphoacceptor) domain Chro_0068 SM00838 Elongation factor G C-terminus Chro_0075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Chro_0076 SM00382 ATPases associated with a variety of cellular activities Chro_0077 SM00382 ATPases associated with a variety of cellular activities Chro_0078 SM00823 Phosphopantetheine attachment site Chro_0083 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_0084 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_0085 SM00421 helix_turn_helix, Lux Regulon Chro_0086 SM01093 Chro_0086 Chro_0092 SM00480 DNA polymerase III beta subunit Chro_0095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_0097 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0097 SM00387 Histidine kinase-like ATPases Chro_0097 SM00388 His Kinase A (phosphoacceptor) domain Chro_0098 SM00448 cheY-homologous receiver domain Chro_0101 SM00382 ATPases associated with a variety of cellular activities Chro_0102 SM00855 Phosphoglycerate mutase family Chro_0110 SM00028 Tetratricopeptide repeats Chro_0116 SM00382 ATPases associated with a variety of cellular activities Chro_0119 SM00073 Histidine Phosphotransfer domain Chro_0119 SM00260 Two component signalling adaptor domain Chro_0119 SM00387 Histidine kinase-like ATPases Chro_0119 SM00448 cheY-homologous receiver domain Chro_0119 SM01231 Chro_0119 Chro_0120 SM00028 Tetratricopeptide repeats Chro_0120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_0120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0121 SM00260 Two component signalling adaptor domain Chro_0122 SM00448 cheY-homologous receiver domain Chro_0123 SM00448 cheY-homologous receiver domain Chro_0128 SM00382 ATPases associated with a variety of cellular activities Chro_0135 SM00240 Forkhead associated domain Chro_0139 SM00028 Tetratricopeptide repeats Chro_0144 SM00382 ATPases associated with a variety of cellular activities Chro_0148 SM00347 helix_turn_helix multiple antibiotic resistance protein Chro_0156 SM01133 Chro_0156 Chro_0162 SM00382 ATPases associated with a variety of cellular activities Chro_0166 SM00937 Chro_0166 Chro_0172 SM00662 RNA polymerases D Chro_0176 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_0185 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Chro_0186 SM01374 Chro_0186 Chro_0190 SM00322 K homology RNA-binding domain Chro_0193 SM01382 Chro_0193 Chro_0193 SM01383 Chro_0193 Chro_0199 SM00382 ATPases associated with a variety of cellular activities Chro_0199 SM00393 Putative single-stranded nucleic acids-binding domain Chro_0202 SM00933 Chro_0202 Chro_0205 SM00363 S4 RNA-binding domain Chro_0213 SM00260 Two component signalling adaptor domain Chro_0214 SM00073 Histidine Phosphotransfer domain Chro_0214 SM00260 Two component signalling adaptor domain Chro_0214 SM00387 Histidine kinase-like ATPases Chro_0214 SM00448 cheY-homologous receiver domain Chro_0214 SM01231 Chro_0214 Chro_0215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_0215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_0215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0216 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_0216 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_0216 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0217 SM00260 Two component signalling adaptor domain Chro_0218 SM00448 cheY-homologous receiver domain Chro_0219 SM00448 cheY-homologous receiver domain Chro_0250 SM00138 Methyltransferase, chemotaxis proteins Chro_0255 SM00382 ATPases associated with a variety of cellular activities Chro_0257 SM00393 Putative single-stranded nucleic acids-binding domain Chro_0263 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Chro_0263 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Chro_0273 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_0273 SM00387 Histidine kinase-like ATPases Chro_0273 SM00388 His Kinase A (phosphoacceptor) domain Chro_0276 SM00382 ATPases associated with a variety of cellular activities Chro_0277 SM00434 DNA Topoisomerase IV Chro_0278 SM00448 cheY-homologous receiver domain Chro_0297 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_0300 SM00822 Chro_0300 Chro_0301 SM00829 Enoylreductase Chro_0310 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_0312 SM00387 Histidine kinase-like ATPases Chro_0312 SM00433 TopoisomeraseII Chro_0329 SM00028 Tetratricopeptide repeats Chro_0329 SM00271 DnaJ molecular chaperone homology domain Chro_0331 SM00318 Staphylococcal nuclease homologues Chro_0336 SM01152 Chro_0336 Chro_0337 SM00989 Chro_0337 Chro_0340 SM00989 Chro_0340 Chro_0343 SM00028 Tetratricopeptide repeats Chro_0344 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_0350 SM01350 Chro_0350 Chro_0358 SM00244 prohibitin homologues Chro_0372 SM00710 Parallel beta-helix repeats Chro_0373 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_0373 SM00320 WD40 repeats Chro_0375 SM01321 Chro_0375 Chro_0380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Chro_0396 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Chro_0397 SM00855 Phosphoglycerate mutase family Chro_0400 SM00028 Tetratricopeptide repeats Chro_0403 SM00382 ATPases associated with a variety of cellular activities Chro_0407 SM01004 Delta-aminolevulinic acid dehydratase Chro_0413 SM00450 Rhodanese Homology Domain Chro_0416 SM00387 Histidine kinase-like ATPases Chro_0418 SM00173 Ras subfamily of RAS small GTPases Chro_0418 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases Chro_0418 SM00175 Rab subfamily of small GTPases Chro_0423 SM00382 ATPases associated with a variety of cellular activities Chro_0424 SM00028 Tetratricopeptide repeats Chro_0427 SM00382 ATPases associated with a variety of cellular activities Chro_0433 SM00342 helix_turn_helix, arabinose operon control protein Chro_0434 SM01329 Chro_0434 Chro_0449 SM00663 RNA polymerase I subunit A N-terminus Chro_0451 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_0458 SM00567 E-Z type HEAT repeats Chro_0464 SM00861 Transketolase, pyrimidine binding domain Chro_0471 SM00822 Chro_0471 Chro_0475 SM00342 helix_turn_helix, arabinose operon control protein Chro_0482 SM00028 Tetratricopeptide repeats Chro_0483 SM00912 haemagglutination activity domain Chro_0486 SM00912 haemagglutination activity domain Chro_0488 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_0488 SM01080 Chro_0488 Chro_0490 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Chro_0490 SM00474 3'-5' exonuclease Chro_0490 SM00475 5'-3' exonuclease Chro_0490 SM00482 DNA polymerase A domain Chro_0496 SM00327 von Willebrand factor (vWF) type A domain Chro_0505 SM00650 Ribosomal RNA adenine dimethylases Chro_0508 SM01400 Chro_0508 Chro_0512 SM00382 ATPases associated with a variety of cellular activities Chro_0523 SM00448 cheY-homologous receiver domain Chro_0523 SM00862 Transcriptional regulatory protein, C terminal Chro_0524 SM00387 Histidine kinase-like ATPases Chro_0524 SM00388 His Kinase A (phosphoacceptor) domain Chro_0528 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_0529 SM00271 DnaJ molecular chaperone homology domain Chro_0542 SM00382 ATPases associated with a variety of cellular activities Chro_0548 SM00998 Adenylosuccinate lyase C-terminus Chro_0553 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_0553 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_0556 SM00732 Likely ribonuclease with RNase H fold. Chro_0563 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0563 SM00387 Histidine kinase-like ATPases Chro_0563 SM00388 His Kinase A (phosphoacceptor) domain Chro_0564 SM00448 cheY-homologous receiver domain Chro_0564 SM00862 Transcriptional regulatory protein, C terminal Chro_0577 SM00878 Biotin carboxylase C-terminal domain Chro_0579 SM00382 ATPases associated with a variety of cellular activities Chro_0581 SM00905 Dihydroneopterin aldolase Chro_0584 SM00883 Chaperonin 10 Kd subunit Chro_0586 SM00421 helix_turn_helix, Lux Regulon Chro_0586 SM00448 cheY-homologous receiver domain Chro_0587 SM00271 DnaJ molecular chaperone homology domain Chro_0592 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_0593 SM00838 Elongation factor G C-terminus Chro_0593 SM00889 Elongation factor G, domain IV Chro_0595 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_0595 SM00245 tail specific protease Chro_0611 SM00091 PAS domain Chro_0611 SM00387 Histidine kinase-like ATPases Chro_0611 SM00388 His Kinase A (phosphoacceptor) domain Chro_0613 SM00448 cheY-homologous receiver domain Chro_0614 SM00073 Histidine Phosphotransfer domain Chro_0614 SM00260 Two component signalling adaptor domain Chro_0614 SM00387 Histidine kinase-like ATPases Chro_0614 SM01231 Chro_0614 Chro_0615 SM00260 Two component signalling adaptor domain Chro_0616 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_0616 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0617 SM00448 cheY-homologous receiver domain Chro_0618 SM00138 Methyltransferase, chemotaxis proteins Chro_0626 SM00382 ATPases associated with a variety of cellular activities Chro_0641 SM00829 Enoylreductase Chro_0642 SM00400 zinc finger Chro_0642 SM00493 Chro_0642 Chro_0645 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_0650 SM00646 Chro_0650 Chro_0652 SM00448 cheY-homologous receiver domain Chro_0653 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_0656 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_0656 SM00091 PAS domain Chro_0656 SM00387 Histidine kinase-like ATPases Chro_0656 SM00388 His Kinase A (phosphoacceptor) domain Chro_0657 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_0657 SM00387 Histidine kinase-like ATPases Chro_0657 SM00388 His Kinase A (phosphoacceptor) domain Chro_0657 SM00448 cheY-homologous receiver domain Chro_0667 SM00382 ATPases associated with a variety of cellular activities Chro_0675 SM00320 WD40 repeats Chro_0681 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Chro_0690 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Chro_0691 SM00563 Phosphate acyltransferases Chro_0697 SM00858 Chro_0697 Chro_0703 SM00382 ATPases associated with a variety of cellular activities Chro_0710 SM00823 Phosphopantetheine attachment site Chro_0719 SM00984 UDP binding domain Chro_0721 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_0758 SM00360 RNA recognition motif Chro_0760 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Chro_0774 SM00421 helix_turn_helix, Lux Regulon Chro_0774 SM00448 cheY-homologous receiver domain Chro_0788 SM00706 Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins. Chro_0808 SM00382 ATPases associated with a variety of cellular activities Chro_0813 SM00912 haemagglutination activity domain Chro_0823 SM00363 S4 RNA-binding domain Chro_0835 SM01321 Chro_0835 Chro_0856 SM00382 ATPases associated with a variety of cellular activities Chro_0858 SM00347 helix_turn_helix multiple antibiotic resistance protein Chro_0868 SM00185 Armadillo/beta-catenin-like repeats Chro_0868 SM00567 E-Z type HEAT repeats Chro_0873 SM00642 Alpha-amylase domain Chro_0874 SM00448 cheY-homologous receiver domain Chro_0874 SM00862 Transcriptional regulatory protein, C terminal Chro_0875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_0875 SM00387 Histidine kinase-like ATPases Chro_0875 SM00388 His Kinase A (phosphoacceptor) domain Chro_0877 SM00382 ATPases associated with a variety of cellular activities Chro_0896 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_0896 SM01091 Transporter associated domain Chro_0901 SM01207 Chro_0901 Chro_0904 SM00382 ATPases associated with a variety of cellular activities Chro_0905 SM00382 ATPases associated with a variety of cellular activities Chro_0917 SM00046 Diacylglycerol kinase catalytic domain (presumed) Chro_0919 SM00642 Alpha-amylase domain Chro_0925 SM00062 Bacterial periplasmic substrate-binding proteins Chro_0925 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Chro_0926 SM00382 ATPases associated with a variety of cellular activities Chro_0935 SM00822 Chro_0935 Chro_0942 SM00382 ATPases associated with a variety of cellular activities Chro_0944 SM00450 Rhodanese Homology Domain Chro_0954 SM01011 Aminopeptidase P, N-terminal domain Chro_0956 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_0956 SM00924 MgtE intracellular N domain Chro_0961 SM00382 ATPases associated with a variety of cellular activities Chro_0963 SM00345 helix_turn_helix gluconate operon transcriptional repressor Chro_0963 SM00895 Chro_0963 Chro_0966 SM00091 PAS domain Chro_0975 SM01094 CpcD/allophycocyanin linker domain Chro_0984 SM00382 ATPases associated with a variety of cellular activities Chro_0989 SM00567 E-Z type HEAT repeats Chro_0990 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_0992 SM00052 Putative diguanylate phosphodiesterase Chro_0992 SM00267 diguanylate cyclase Chro_0992 SM00448 cheY-homologous receiver domain Chro_0997 SM01116 Chro_0997 Chro_1005 SM00877 Chro_1005 Chro_1007 SM00961 Ribulose bisphosphate carboxylase, small chain Chro_1009 SM00877 Chro_1009 Chro_1010 SM00877 Chro_1010 Chro_1022 SM00421 helix_turn_helix, Lux Regulon Chro_1022 SM00448 cheY-homologous receiver domain Chro_1023 SM00387 Histidine kinase-like ATPases Chro_1023 SM00448 cheY-homologous receiver domain Chro_1025 SM00091 PAS domain Chro_1025 SM00387 Histidine kinase-like ATPases Chro_1025 SM00388 His Kinase A (phosphoacceptor) domain Chro_1025 SM00448 cheY-homologous receiver domain Chro_1027 SM00448 cheY-homologous receiver domain Chro_1028 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_1028 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1028 SM00091 PAS domain Chro_1028 SM00387 Histidine kinase-like ATPases Chro_1028 SM00388 His Kinase A (phosphoacceptor) domain Chro_1029 SM00448 cheY-homologous receiver domain Chro_1029 SM00862 Transcriptional regulatory protein, C terminal Chro_1043 SM00342 helix_turn_helix, arabinose operon control protein Chro_1046 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_1048 SM00155 Phospholipase D. Active site motifs. Chro_1062 SM00028 Tetratricopeptide repeats Chro_1086 SM00382 ATPases associated with a variety of cellular activities Chro_1111 SM01321 Chro_1111 Chro_1113 SM00347 helix_turn_helix multiple antibiotic resistance protein Chro_1114 SM00320 WD40 repeats Chro_1116 SM00642 Alpha-amylase domain Chro_1129 SM00342 helix_turn_helix, arabinose operon control protein Chro_1132 SM00506 Appr-1"-p processing enzyme Chro_1143 SM00642 Alpha-amylase domain Chro_1155 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Chro_1156 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Chro_1161 SM00271 DnaJ molecular chaperone homology domain Chro_1216 SM00825 Beta-ketoacyl synthase Chro_1219 SM00028 Tetratricopeptide repeats Chro_1219 SM00382 ATPases associated with a variety of cellular activities Chro_1220 SM00028 Tetratricopeptide repeats Chro_1237 SM00091 PAS domain Chro_1237 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_1250 SM00877 Chro_1250 Chro_1251 SM00877 Chro_1251 Chro_1252 SM00450 Rhodanese Homology Domain Chro_1253 SM00853 MutL C terminal dimerisation domain Chro_1253 SM01340 Chro_1253 Chro_1259 SM01150 Chro_1259 Chro_1271 SM00448 cheY-homologous receiver domain Chro_1272 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_1272 SM00387 Histidine kinase-like ATPases Chro_1272 SM00388 His Kinase A (phosphoacceptor) domain Chro_1279 SM00382 ATPases associated with a variety of cellular activities Chro_1289 SM00271 DnaJ molecular chaperone homology domain Chro_1290 SM00507 HNH nucleases Chro_1316 SM00267 diguanylate cyclase Chro_1316 SM00448 cheY-homologous receiver domain Chro_1317 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_1317 SM00387 Histidine kinase-like ATPases Chro_1317 SM00388 His Kinase A (phosphoacceptor) domain Chro_1317 SM00448 cheY-homologous receiver domain Chro_1320 SM00382 ATPases associated with a variety of cellular activities Chro_1328 SM00342 helix_turn_helix, arabinose operon control protein Chro_1336 SM00271 DnaJ molecular chaperone homology domain Chro_1338 SM00959 Rho termination factor, N-terminal domain Chro_1344 SM00342 helix_turn_helix, arabinose operon control protein Chro_1356 SM00382 ATPases associated with a variety of cellular activities Chro_1358 SM00028 Tetratricopeptide repeats Chro_1360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_1360 SM00387 Histidine kinase-like ATPases Chro_1360 SM00388 His Kinase A (phosphoacceptor) domain Chro_1360 SM00448 cheY-homologous receiver domain Chro_1361 SM00052 Putative diguanylate phosphodiesterase Chro_1361 SM00267 diguanylate cyclase Chro_1361 SM00448 cheY-homologous receiver domain Chro_1365 SM01359 Chro_1365 Chro_1365 SM01360 Chro_1365 Chro_1371 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Chro_1371 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Chro_1371 SM00493 Chro_1371 Chro_1372 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1372 SM00091 PAS domain Chro_1372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_1372 SM00387 Histidine kinase-like ATPases Chro_1372 SM00388 His Kinase A (phosphoacceptor) domain Chro_1395 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Chro_1395 SM00534 ATPase domain of DNA mismatch repair MUTS family Chro_1399 SM00732 Likely ribonuclease with RNase H fold. Chro_1409 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Chro_1420 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_1422 SM00028 Tetratricopeptide repeats Chro_1425 SM00028 Tetratricopeptide repeats Chro_1433 SM00448 cheY-homologous receiver domain Chro_1433 SM00862 Transcriptional regulatory protein, C terminal Chro_1434 SM00091 PAS domain Chro_1434 SM00387 Histidine kinase-like ATPases Chro_1434 SM00388 His Kinase A (phosphoacceptor) domain Chro_1437 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_1442 SM00563 Phosphate acyltransferases Chro_1444 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Chro_1451 SM00448 cheY-homologous receiver domain Chro_1454 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_1454 SM00387 Histidine kinase-like ATPases Chro_1457 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_1457 SM00387 Histidine kinase-like ATPases Chro_1458 SM00382 ATPases associated with a variety of cellular activities Chro_1463 SM00448 cheY-homologous receiver domain Chro_1463 SM00862 Transcriptional regulatory protein, C terminal Chro_1465 SM00861 Transketolase, pyrimidine binding domain Chro_1469 SM00388 His Kinase A (phosphoacceptor) domain Chro_1471 SM01207 Chro_1471 Chro_1485 SM00487 DEAD-like helicases superfamily Chro_1485 SM00490 helicase superfamily c-terminal domain Chro_1497 SM00478 endonuclease III Chro_1497 SM00525 Chro_1497 Chro_1498 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_1504 SM00387 Histidine kinase-like ATPases Chro_1504 SM00388 His Kinase A (phosphoacceptor) domain Chro_1511 SM00642 Alpha-amylase domain Chro_1512 SM00642 Alpha-amylase domain Chro_1513 SM00642 Alpha-amylase domain Chro_1515 SM00642 Alpha-amylase domain Chro_1521 SM00028 Tetratricopeptide repeats Chro_1535 SM00631 Chro_1535 Chro_1544 SM00421 helix_turn_helix, Lux Regulon Chro_1544 SM00448 cheY-homologous receiver domain Chro_1545 SM00226 Low molecular weight phosphatase family Chro_1559 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_1559 SM00924 MgtE intracellular N domain Chro_1570 SM00460 Transglutaminase/protease-like homologues Chro_1577 SM00387 Histidine kinase-like ATPases Chro_1577 SM00388 His Kinase A (phosphoacceptor) domain Chro_1580 SM00327 von Willebrand factor (vWF) type A domain Chro_1580 SM00382 ATPases associated with a variety of cellular activities Chro_1586 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_1590 SM00382 ATPases associated with a variety of cellular activities Chro_1592 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1592 SM00091 PAS domain Chro_1592 SM00387 Histidine kinase-like ATPases Chro_1592 SM00388 His Kinase A (phosphoacceptor) domain Chro_1592 SM00448 cheY-homologous receiver domain Chro_1593 SM00448 cheY-homologous receiver domain Chro_1594 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_1594 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1594 SM00091 PAS domain Chro_1594 SM00387 Histidine kinase-like ATPases Chro_1594 SM00388 His Kinase A (phosphoacceptor) domain Chro_1594 SM00448 cheY-homologous receiver domain Chro_1596 SM00834 Putative regulatory protein Chro_1599 SM00829 Enoylreductase Chro_1602 SM00267 diguanylate cyclase Chro_1602 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_1603 SM01240 Chro_1603 Chro_1609 SM00829 Enoylreductase Chro_1616 SM00052 Putative diguanylate phosphodiesterase Chro_1616 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1616 SM00091 PAS domain Chro_1616 SM00267 diguanylate cyclase Chro_1624 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_1624 SM00387 Histidine kinase-like ATPases Chro_1624 SM00388 His Kinase A (phosphoacceptor) domain Chro_1624 SM00448 cheY-homologous receiver domain Chro_1625 SM00052 Putative diguanylate phosphodiesterase Chro_1625 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1625 SM00091 PAS domain Chro_1625 SM00267 diguanylate cyclase Chro_1625 SM00448 cheY-homologous receiver domain Chro_1629 SM00487 DEAD-like helicases superfamily Chro_1629 SM00490 helicase superfamily c-terminal domain Chro_1641 SM01321 Chro_1641 Chro_1643 SM00028 Tetratricopeptide repeats Chro_1643 SM00271 DnaJ molecular chaperone homology domain Chro_1643 SM00320 WD40 repeats Chro_1648 SM00382 ATPases associated with a variety of cellular activities Chro_1670 SM00448 cheY-homologous receiver domain Chro_1677 SM00567 E-Z type HEAT repeats Chro_1683 SM00382 ATPases associated with a variety of cellular activities Chro_1685 SM00327 von Willebrand factor (vWF) type A domain Chro_1689 SM00487 DEAD-like helicases superfamily Chro_1689 SM00490 helicase superfamily c-terminal domain Chro_1689 SM01142 Chro_1689 Chro_1697 SM00382 ATPases associated with a variety of cellular activities Chro_1703 SM00271 DnaJ molecular chaperone homology domain Chro_1711 SM00382 ATPases associated with a variety of cellular activities Chro_1721 SM00382 ATPases associated with a variety of cellular activities Chro_1722 SM00382 ATPases associated with a variety of cellular activities Chro_1725 SM00271 DnaJ molecular chaperone homology domain Chro_1730 SM00382 ATPases associated with a variety of cellular activities Chro_1735 SM00860 SMI1 / KNR4 family Chro_1740 SM00825 Beta-ketoacyl synthase Chro_1741 SM00861 Transketolase, pyrimidine binding domain Chro_1742 SM00420 helix_turn_helix, Deoxyribose operon repressor Chro_1742 SM01134 Chro_1742 Chro_1743 SM00861 Transketolase, pyrimidine binding domain Chro_1752 SM00091 PAS domain Chro_1752 SM00387 Histidine kinase-like ATPases Chro_1752 SM00388 His Kinase A (phosphoacceptor) domain Chro_1753 SM00448 cheY-homologous receiver domain Chro_1754 SM00382 ATPases associated with a variety of cellular activities Chro_1755 SM00833 Cobalamin synthesis protein cobW C-terminal domain Chro_1756 SM00320 WD40 repeats Chro_1762 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Chro_1768 SM01230 Chro_1768 Chro_1777 SM00382 ATPases associated with a variety of cellular activities Chro_1779 SM00382 ATPases associated with a variety of cellular activities Chro_1788 SM00829 Enoylreductase Chro_1799 SM00849 Metallo-beta-lactamase superfamily Chro_1800 SM01130 Chro_1800 Chro_1801 SM00859 Semialdehyde dehydrogenase, NAD binding domain Chro_1804 SM00382 ATPases associated with a variety of cellular activities Chro_1804 SM00994 ClpX C4-type zinc finger Chro_1804 SM01086 C-terminal, D2-small domain, of ClpB protein Chro_1807 SM00345 helix_turn_helix gluconate operon transcriptional repressor Chro_1809 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_1810 SM00382 ATPases associated with a variety of cellular activities Chro_1818 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1818 SM00091 PAS domain Chro_1818 SM00387 Histidine kinase-like ATPases Chro_1818 SM00388 His Kinase A (phosphoacceptor) domain Chro_1818 SM00448 cheY-homologous receiver domain Chro_1823 SM00072 Guanylate kinase homologues. Chro_1838 SM01080 Chro_1838 Chro_1848 SM00257 Lysin motif Chro_1853 SM00382 ATPases associated with a variety of cellular activities Chro_1858 SM00382 ATPases associated with a variety of cellular activities Chro_1858 SM00962 SRP54-type protein, GTPase domain Chro_1858 SM00963 SRP54-type protein, helical bundle domain Chro_1860 SM00632 Chro_1860 Chro_1860 SM00642 Alpha-amylase domain Chro_1860 SM01065 Starch binding domain Chro_1864 SM00342 helix_turn_helix, arabinose operon control protein Chro_1865 SM00387 Histidine kinase-like ATPases Chro_1865 SM00388 His Kinase A (phosphoacceptor) domain Chro_1879 SM01001 AIR carboxylase Chro_1882 SM00448 cheY-homologous receiver domain Chro_1883 SM00091 PAS domain Chro_1883 SM00387 Histidine kinase-like ATPases Chro_1883 SM00388 His Kinase A (phosphoacceptor) domain Chro_1883 SM00448 cheY-homologous receiver domain Chro_1885 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_1885 SM00387 Histidine kinase-like ATPases Chro_1886 SM00052 Putative diguanylate phosphodiesterase Chro_1886 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_1886 SM00091 PAS domain Chro_1886 SM00267 diguanylate cyclase Chro_1900 SM00448 cheY-homologous receiver domain Chro_1902 SM00448 cheY-homologous receiver domain Chro_1904 SM00829 Enoylreductase Chro_1905 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_1905 SM00320 WD40 repeats Chro_1911 SM00028 Tetratricopeptide repeats Chro_1918 SM00382 ATPases associated with a variety of cellular activities Chro_1922 SM00823 Phosphopantetheine attachment site Chro_1924 SM00823 Phosphopantetheine attachment site Chro_1943 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Chro_1944 SM01092 CO dehydrogenase flavoprotein C-terminal domain Chro_1966 SM00382 ATPases associated with a variety of cellular activities Chro_1972 SM00710 Parallel beta-helix repeats Chro_1974 SM00919 Malic enzyme, NAD binding domain Chro_1974 SM01274 Chro_1974 Chro_1980 SM00267 diguanylate cyclase Chro_1980 SM00448 cheY-homologous receiver domain Chro_1980 SM00862 Transcriptional regulatory protein, C terminal Chro_1981 SM00448 cheY-homologous receiver domain Chro_1997 SM00028 Tetratricopeptide repeats Chro_1999 SM00327 von Willebrand factor (vWF) type A domain Chro_2000 SM00448 cheY-homologous receiver domain Chro_2005 SM00382 ATPases associated with a variety of cellular activities Chro_2015 SM00382 ATPases associated with a variety of cellular activities Chro_2025 SM00138 Methyltransferase, chemotaxis proteins Chro_2026 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_2026 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_2026 SM00387 Histidine kinase-like ATPases Chro_2026 SM00388 His Kinase A (phosphoacceptor) domain Chro_2026 SM00448 cheY-homologous receiver domain Chro_2029 SM00387 Histidine kinase-like ATPases Chro_2029 SM00388 His Kinase A (phosphoacceptor) domain Chro_2029 SM00448 cheY-homologous receiver domain Chro_2030 SM00091 PAS domain Chro_2030 SM00448 cheY-homologous receiver domain Chro_2033 SM00320 WD40 repeats Chro_2034 SM00925 MltA specific insert domain Chro_2049 SM00448 cheY-homologous receiver domain Chro_2049 SM00862 Transcriptional regulatory protein, C terminal Chro_2056 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_2057 SM00028 Tetratricopeptide repeats Chro_2066 SM00904 Riboflavin kinase Chro_2068 SM01387 Chro_2068 Chro_2072 SM00421 helix_turn_helix, Lux Regulon Chro_2072 SM00448 cheY-homologous receiver domain Chro_2077 SM00382 ATPases associated with a variety of cellular activities Chro_2077 SM01086 C-terminal, D2-small domain, of ClpB protein Chro_2078 SM00091 PAS domain Chro_2078 SM00240 Forkhead associated domain Chro_2078 SM00387 Histidine kinase-like ATPases Chro_2078 SM00388 His Kinase A (phosphoacceptor) domain Chro_2080 SM00822 Chro_2080 Chro_2085 SM00448 cheY-homologous receiver domain Chro_2087 SM00955 Chro_2087 Chro_2090 SM00852 Probable molybdopterin binding domain Chro_2097 SM00382 ATPases associated with a variety of cellular activities Chro_2100 SM00028 Tetratricopeptide repeats Chro_2102 SM00382 ATPases associated with a variety of cellular activities Chro_2106 SM00421 helix_turn_helix, Lux Regulon Chro_2109 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Chro_2109 SM01232 Chro_2109 Chro_2121 SM00448 cheY-homologous receiver domain Chro_2124 SM00563 Phosphate acyltransferases Chro_2126 SM00823 Phosphopantetheine attachment site Chro_2132 SM00633 Glycosyl hydrolase family 10 Chro_2146 SM00248 ankyrin repeats Chro_2179 SM00642 Alpha-amylase domain Chro_2181 SM00448 cheY-homologous receiver domain Chro_2182 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_2182 SM00387 Histidine kinase-like ATPases Chro_2188 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_2201 SM00091 PAS domain Chro_2201 SM00387 Histidine kinase-like ATPases Chro_2201 SM00388 His Kinase A (phosphoacceptor) domain Chro_2201 SM00448 cheY-homologous receiver domain Chro_2208 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_2214 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_2219 SM00421 helix_turn_helix, Lux Regulon Chro_2219 SM00448 cheY-homologous receiver domain Chro_2220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_2220 SM00387 Histidine kinase-like ATPases Chro_2220 SM00388 His Kinase A (phosphoacceptor) domain Chro_2221 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Chro_2226 SM01018 B12 binding domain Chro_2230 SM00382 ATPases associated with a variety of cellular activities Chro_2232 SM00422 helix_turn_helix, mercury resistance Chro_2241 SM00382 ATPases associated with a variety of cellular activities Chro_2244 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_2244 SM00320 WD40 repeats Chro_2255 SM00855 Phosphoglycerate mutase family Chro_2258 SM00507 HNH nucleases Chro_2259 SM01005 Alanine racemase, C-terminal domain Chro_2261 SM00360 RNA recognition motif Chro_2270 SM00327 von Willebrand factor (vWF) type A domain Chro_2272 SM00487 DEAD-like helicases superfamily Chro_2272 SM00490 helicase superfamily c-terminal domain Chro_2295 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_2295 SM00240 Forkhead associated domain Chro_2296 SM00331 Sigma factor PP2C-like phosphatases Chro_2296 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Chro_2303 SM00073 Histidine Phosphotransfer domain Chro_2303 SM00260 Two component signalling adaptor domain Chro_2303 SM00387 Histidine kinase-like ATPases Chro_2303 SM00448 cheY-homologous receiver domain Chro_2303 SM01231 Chro_2303 Chro_2304 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_2304 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_2304 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_2305 SM00260 Two component signalling adaptor domain Chro_2321 SM00382 ATPases associated with a variety of cellular activities Chro_2321 SM00962 SRP54-type protein, GTPase domain Chro_2321 SM00963 SRP54-type protein, helical bundle domain Chro_2322 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_2322 SM00331 Sigma factor PP2C-like phosphatases Chro_2332 SM00829 Enoylreductase Chro_2333 SM00046 Diacylglycerol kinase catalytic domain (presumed) Chro_2335 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Chro_2350 SM00382 ATPases associated with a variety of cellular activities Chro_2360 SM01021 Bacteriorhodopsin-like protein Chro_2369 SM00382 ATPases associated with a variety of cellular activities Chro_2385 SM00633 Glycosyl hydrolase family 10 Chro_2396 SM00450 Rhodanese Homology Domain Chro_2405 SM00028 Tetratricopeptide repeats Chro_2412 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_2412 SM00387 Histidine kinase-like ATPases Chro_2412 SM00388 His Kinase A (phosphoacceptor) domain Chro_2413 SM00448 cheY-homologous receiver domain Chro_2414 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_2414 SM00091 PAS domain Chro_2414 SM00387 Histidine kinase-like ATPases Chro_2414 SM00388 His Kinase A (phosphoacceptor) domain Chro_2414 SM00448 cheY-homologous receiver domain Chro_2415 SM00881 CoA binding domain Chro_2421 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_2426 SM00382 ATPases associated with a variety of cellular activities Chro_2429 SM00448 cheY-homologous receiver domain Chro_2429 SM00862 Transcriptional regulatory protein, C terminal Chro_2431 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_2431 SM00876 Biotin and Thiamin Synthesis associated domain Chro_2439 SM00463 Small MutS-related domain Chro_2439 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Chro_2439 SM00534 ATPase domain of DNA mismatch repair MUTS family Chro_2440 SM01240 Chro_2440 Chro_2449 SM00342 helix_turn_helix, arabinose operon control protein Chro_2459 SM00642 Alpha-amylase domain Chro_2463 SM00710 Parallel beta-helix repeats Chro_2464 SM00448 cheY-homologous receiver domain Chro_2468 SM00382 ATPases associated with a variety of cellular activities Chro_2476 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_2486 SM00028 Tetratricopeptide repeats Chro_2499 SM00360 RNA recognition motif Chro_2503 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_2507 SM00360 RNA recognition motif Chro_2512 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_2520 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_2535 SM00448 cheY-homologous receiver domain Chro_2536 SM00448 cheY-homologous receiver domain Chro_2538 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_2539 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_2539 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_2540 SM00387 Histidine kinase-like ATPases Chro_2540 SM00448 cheY-homologous receiver domain Chro_2541 SM00474 3'-5' exonuclease Chro_2543 SM00644 Chro_2543 Chro_2549 SM00382 ATPases associated with a variety of cellular activities Chro_2558 SM00342 helix_turn_helix, arabinose operon control protein Chro_2560 SM00342 helix_turn_helix, arabinose operon control protein Chro_2570 SM00342 helix_turn_helix, arabinose operon control protein Chro_2573 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_2576 SM00823 Phosphopantetheine attachment site Chro_2576 SM00824 Thioesterase Chro_2579 SM00823 Phosphopantetheine attachment site Chro_2580 SM00823 Phosphopantetheine attachment site Chro_2586 SM00864 Tubulin/FtsZ family, GTPase domain Chro_2586 SM00865 Tubulin/FtsZ family, C-terminal domain Chro_2593 SM00382 ATPases associated with a variety of cellular activities Chro_2597 SM00450 Rhodanese Homology Domain Chro_2598 SM00244 prohibitin homologues Chro_2600 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_2600 SM00320 WD40 repeats Chro_2600 SM00564 beta-propeller repeat Chro_2603 SM00881 CoA binding domain Chro_2605 SM00822 Chro_2605 Chro_2611 SM00028 Tetratricopeptide repeats Chro_2612 SM00091 PAS domain Chro_2612 SM00387 Histidine kinase-like ATPases Chro_2612 SM00388 His Kinase A (phosphoacceptor) domain Chro_2617 SM00091 PAS domain Chro_2617 SM00387 Histidine kinase-like ATPases Chro_2617 SM00388 His Kinase A (phosphoacceptor) domain Chro_2617 SM00448 cheY-homologous receiver domain Chro_2617 SM00862 Transcriptional regulatory protein, C terminal Chro_2622 SM00996 S-adenosyl-L-homocysteine hydrolase Chro_2622 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Chro_2624 SM00382 ATPases associated with a variety of cellular activities Chro_2640 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_2640 SM00320 WD40 repeats Chro_2641 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_2642 SM00479 Chro_2642 Chro_2643 SM00028 Tetratricopeptide repeats Chro_2647 SM00342 helix_turn_helix, arabinose operon control protein Chro_2652 SM00434 DNA Topoisomerase IV Chro_2665 SM00478 endonuclease III Chro_2665 SM00525 Chro_2665 Chro_2669 SM00028 Tetratricopeptide repeats Chro_2684 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Chro_2686 SM00052 Putative diguanylate phosphodiesterase Chro_2686 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_2686 SM00091 PAS domain Chro_2686 SM00267 diguanylate cyclase Chro_2690 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_2690 SM00091 PAS domain Chro_2690 SM00387 Histidine kinase-like ATPases Chro_2690 SM00388 His Kinase A (phosphoacceptor) domain Chro_2691 SM00448 cheY-homologous receiver domain Chro_2691 SM00862 Transcriptional regulatory protein, C terminal Chro_2693 SM00919 Malic enzyme, NAD binding domain Chro_2693 SM01274 Chro_2693 Chro_2697 SM00851 MGS-like domain Chro_2697 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Chro_2699 SM00855 Phosphoglycerate mutase family Chro_2703 SM00327 von Willebrand factor (vWF) type A domain Chro_2718 SM00382 ATPases associated with a variety of cellular activities Chro_2722 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Chro_2722 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Chro_2723 SM00849 Metallo-beta-lactamase superfamily Chro_2727 SM00507 HNH nucleases Chro_2738 SM00448 cheY-homologous receiver domain Chro_2750 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_2754 SM00649 Ribosomal protein L11/L12 Chro_2755 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Chro_2755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Chro_2760 SM00849 Metallo-beta-lactamase superfamily Chro_2760 SM00903 Flavin reductase like domain Chro_2763 SM00849 Metallo-beta-lactamase superfamily Chro_2763 SM00903 Flavin reductase like domain Chro_2774 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_2779 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Chro_2779 SM00493 Chro_2779 Chro_2783 SM00448 cheY-homologous receiver domain Chro_2783 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Chro_2785 SM00859 Semialdehyde dehydrogenase, NAD binding domain Chro_2786 SM01192 Chro_2786 Chro_2786 SM01193 Chro_2786 Chro_2788 SM00382 ATPases associated with a variety of cellular activities Chro_2788 SM01086 C-terminal, D2-small domain, of ClpB protein Chro_2803 SM00347 helix_turn_helix multiple antibiotic resistance protein Chro_2807 SM00947 Carbonic anhydrase Chro_2810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Chro_2810 SM00292 breast cancer carboxy-terminal domain Chro_2810 SM00532 Ligase N family Chro_2813 SM00091 PAS domain Chro_2813 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_2813 SM00387 Histidine kinase-like ATPases Chro_2813 SM00388 His Kinase A (phosphoacceptor) domain Chro_2817 SM01228 Chro_2817 Chro_2819 SM00345 helix_turn_helix gluconate operon transcriptional repressor Chro_2819 SM00895 Chro_2819 Chro_2830 SM00938 Nitrogen regulatory protein P-II Chro_2845 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_2847 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Chro_2851 SM00226 Low molecular weight phosphatase family Chro_2852 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_2856 SM01236 Chro_2856 Chro_2860 SM00670 Large family of predicted nucleotide-binding domains Chro_2862 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_2866 SM00829 Enoylreductase Chro_2869 SM00530 Helix-turn-helix XRE-family like proteins Chro_2871 SM00470 ParB-like nuclease domain Chro_2877 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_2886 SM00028 Tetratricopeptide repeats Chro_2892 SM00320 WD40 repeats Chro_2894 SM00028 Tetratricopeptide repeats Chro_2928 SM01007 Class II Aldolase and Adducin N-terminal domain Chro_2971 SM00387 Histidine kinase-like ATPases Chro_2971 SM00388 His Kinase A (phosphoacceptor) domain Chro_2975 SM00382 ATPases associated with a variety of cellular activities Chro_2978 SM00562 Chro_2978 Chro_2991 SM00986 Uracil DNA glycosylase superfamily Chro_2991 SM00987 UreE urease accessory protein, C-terminal domain Chro_2993 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Chro_2997 SM00155 Phospholipase D. Active site motifs. Chro_2998 SM00327 von Willebrand factor (vWF) type A domain Chro_2999 SM00925 MltA specific insert domain Chro_3001 SM00387 Histidine kinase-like ATPases Chro_3003 SM00487 DEAD-like helicases superfamily Chro_3003 SM00490 helicase superfamily c-terminal domain Chro_3003 SM00982 Chro_3003 Chro_3003 SM01058 CarD-like/TRCF domain Chro_3004 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_3004 SM01091 Transporter associated domain Chro_3023 SM00487 DEAD-like helicases superfamily Chro_3029 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3029 SM00387 Histidine kinase-like ATPases Chro_3029 SM00388 His Kinase A (phosphoacceptor) domain Chro_3029 SM00448 cheY-homologous receiver domain Chro_3030 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3030 SM00387 Histidine kinase-like ATPases Chro_3030 SM00388 His Kinase A (phosphoacceptor) domain Chro_3030 SM00448 cheY-homologous receiver domain Chro_3032 SM00387 Histidine kinase-like ATPases Chro_3032 SM00388 His Kinase A (phosphoacceptor) domain Chro_3033 SM00448 cheY-homologous receiver domain Chro_3033 SM00862 Transcriptional regulatory protein, C terminal Chro_3040 SM00422 helix_turn_helix, mercury resistance Chro_3051 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3051 SM00091 PAS domain Chro_3051 SM00387 Histidine kinase-like ATPases Chro_3051 SM00388 His Kinase A (phosphoacceptor) domain Chro_3052 SM00448 cheY-homologous receiver domain Chro_3053 SM00421 helix_turn_helix, Lux Regulon Chro_3053 SM00448 cheY-homologous receiver domain Chro_3056 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3072 SM00852 Probable molybdopterin binding domain Chro_3076 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Chro_3093 SM00342 helix_turn_helix, arabinose operon control protein Chro_3094 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_3094 SM00245 tail specific protease Chro_3096 SM00448 cheY-homologous receiver domain Chro_3103 SM00354 helix_turn _helix lactose operon repressor Chro_3104 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_3112 SM00382 ATPases associated with a variety of cellular activities Chro_3116 SM00342 helix_turn_helix, arabinose operon control protein Chro_3116 SM00448 cheY-homologous receiver domain Chro_3118 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Chro_3136 SM00382 ATPases associated with a variety of cellular activities Chro_3150 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Chro_3159 SM00478 endonuclease III Chro_3160 SM00946 Prolyl-tRNA synthetase, C-terminal Chro_3164 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_3164 SM00732 Likely ribonuclease with RNase H fold. Chro_3171 SM00421 helix_turn_helix, Lux Regulon Chro_3171 SM00448 cheY-homologous receiver domain Chro_3172 SM00387 Histidine kinase-like ATPases Chro_3172 SM00388 His Kinase A (phosphoacceptor) domain Chro_3180 SM00382 ATPases associated with a variety of cellular activities Chro_3189 SM00382 ATPases associated with a variety of cellular activities Chro_3190 SM01248 Chro_3190 Chro_3195 SM01007 Class II Aldolase and Adducin N-terminal domain Chro_3196 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3196 SM00421 helix_turn_helix, Lux Regulon Chro_3207 SM00849 Metallo-beta-lactamase superfamily Chro_3213 SM00387 Histidine kinase-like ATPases Chro_3216 SM00342 helix_turn_helix, arabinose operon control protein Chro_3219 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_3219 SM00320 WD40 repeats Chro_3226 SM00849 Metallo-beta-lactamase superfamily Chro_3230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3230 SM00387 Histidine kinase-like ATPases Chro_3230 SM00388 His Kinase A (phosphoacceptor) domain Chro_3242 SM00448 cheY-homologous receiver domain Chro_3243 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3243 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_3243 SM00091 PAS domain Chro_3243 SM00387 Histidine kinase-like ATPases Chro_3243 SM00388 His Kinase A (phosphoacceptor) domain Chro_3243 SM00448 cheY-homologous receiver domain Chro_3244 SM00267 diguanylate cyclase Chro_3244 SM00448 cheY-homologous receiver domain Chro_3244 SM00862 Transcriptional regulatory protein, C terminal Chro_3246 SM00470 ParB-like nuclease domain Chro_3249 SM00382 ATPases associated with a variety of cellular activities Chro_3264 SM00091 PAS domain Chro_3264 SM00448 cheY-homologous receiver domain Chro_3265 SM00387 Histidine kinase-like ATPases Chro_3265 SM00388 His Kinase A (phosphoacceptor) domain Chro_3265 SM00448 cheY-homologous receiver domain Chro_3274 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Chro_3277 SM00382 ATPases associated with a variety of cellular activities Chro_3279 SM00857 Resolvase, N terminal domain Chro_3284 SM01092 CO dehydrogenase flavoprotein C-terminal domain Chro_3285 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Chro_3286 SM00822 Chro_3286 Chro_3298 SM00947 Carbonic anhydrase Chro_3302 SM00342 helix_turn_helix, arabinose operon control protein Chro_3306 SM00320 WD40 repeats Chro_3307 SM00320 WD40 repeats Chro_3314 SM00387 Histidine kinase-like ATPases Chro_3314 SM00388 His Kinase A (phosphoacceptor) domain Chro_3315 SM00448 cheY-homologous receiver domain Chro_3315 SM00862 Transcriptional regulatory protein, C terminal Chro_3326 SM00382 ATPases associated with a variety of cellular activities Chro_3331 SM00421 helix_turn_helix, Lux Regulon Chro_3331 SM00448 cheY-homologous receiver domain Chro_3341 SM00387 Histidine kinase-like ATPases Chro_3341 SM00388 His Kinase A (phosphoacceptor) domain Chro_3341 SM01248 Chro_3341 Chro_3351 SM00091 PAS domain Chro_3351 SM00387 Histidine kinase-like ATPases Chro_3351 SM00388 His Kinase A (phosphoacceptor) domain Chro_3352 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_3352 SM00091 PAS domain Chro_3352 SM00387 Histidine kinase-like ATPases Chro_3352 SM00388 His Kinase A (phosphoacceptor) domain Chro_3352 SM00448 cheY-homologous receiver domain Chro_3360 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_3362 SM00487 DEAD-like helicases superfamily Chro_3362 SM00490 helicase superfamily c-terminal domain Chro_3366 SM00387 Histidine kinase-like ATPases Chro_3366 SM00388 His Kinase A (phosphoacceptor) domain Chro_3367 SM00448 cheY-homologous receiver domain Chro_3367 SM00862 Transcriptional regulatory protein, C terminal Chro_3369 SM00382 ATPases associated with a variety of cellular activities Chro_3381 SM00966 SpoVT / AbrB like domain Chro_3399 SM00363 S4 RNA-binding domain Chro_3403 SM01094 CpcD/allophycocyanin linker domain Chro_3404 SM00567 E-Z type HEAT repeats Chro_3405 SM00567 E-Z type HEAT repeats Chro_3408 SM01094 CpcD/allophycocyanin linker domain Chro_3409 SM01094 CpcD/allophycocyanin linker domain Chro_3410 SM01094 CpcD/allophycocyanin linker domain Chro_3411 SM00567 E-Z type HEAT repeats Chro_3420 SM00966 SpoVT / AbrB like domain Chro_3426 SM01011 Aminopeptidase P, N-terminal domain Chro_3428 SM00965 Secretin and TonB N terminus short domain Chro_3436 SM00450 Rhodanese Homology Domain Chro_3442 SM00567 E-Z type HEAT repeats Chro_3443 SM00028 Tetratricopeptide repeats Chro_3445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3451 SM00421 helix_turn_helix, Lux Regulon Chro_3451 SM00448 cheY-homologous receiver domain Chro_3453 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_3453 SM00091 PAS domain Chro_3453 SM00387 Histidine kinase-like ATPases Chro_3453 SM00388 His Kinase A (phosphoacceptor) domain Chro_3454 SM00448 cheY-homologous receiver domain Chro_3455 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_3455 SM00091 PAS domain Chro_3455 SM00387 Histidine kinase-like ATPases Chro_3455 SM00388 His Kinase A (phosphoacceptor) domain Chro_3455 SM00448 cheY-homologous receiver domain Chro_3457 SM00091 PAS domain Chro_3457 SM00138 Methyltransferase, chemotaxis proteins Chro_3458 SM00091 PAS domain Chro_3458 SM00387 Histidine kinase-like ATPases Chro_3458 SM00388 His Kinase A (phosphoacceptor) domain Chro_3463 SM00448 cheY-homologous receiver domain Chro_3465 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_3466 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3467 SM00382 ATPases associated with a variety of cellular activities Chro_3471 SM00650 Ribosomal RNA adenine dimethylases Chro_3475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Chro_3475 SM00954 Region found in RelA / SpoT proteins Chro_3478 SM00563 Phosphate acyltransferases Chro_3483 SM00342 helix_turn_helix, arabinose operon control protein Chro_3491 SM00487 DEAD-like helicases superfamily Chro_3491 SM00490 helicase superfamily c-terminal domain Chro_3492 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_3494 SM00756 Chro_3494 Chro_3495 SM00091 PAS domain Chro_3495 SM00267 diguanylate cyclase Chro_3495 SM01080 Chro_3495 Chro_3501 SM00880 Chro_3501 Chro_3508 SM00387 Histidine kinase-like ATPases Chro_3508 SM00388 His Kinase A (phosphoacceptor) domain Chro_3508 SM00448 cheY-homologous receiver domain Chro_3510 SM01248 Chro_3510 Chro_3519 SM00382 ATPases associated with a variety of cellular activities Chro_3520 SM00382 ATPases associated with a variety of cellular activities Chro_3531 SM00897 FIST N domain Chro_3531 SM01204 Chro_3531 Chro_3541 SM01093 Chro_3541 Chro_3551 SM00360 RNA recognition motif Chro_3552 SM00382 ATPases associated with a variety of cellular activities Chro_3567 SM00567 E-Z type HEAT repeats Chro_3571 SM00382 ATPases associated with a variety of cellular activities Chro_3572 SM00382 ATPases associated with a variety of cellular activities Chro_3574 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Chro_3576 SM00028 Tetratricopeptide repeats Chro_3583 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_3586 SM00530 Helix-turn-helix XRE-family like proteins Chro_3592 SM00487 DEAD-like helicases superfamily Chro_3592 SM00490 helicase superfamily c-terminal domain Chro_3604 SM00387 Histidine kinase-like ATPases Chro_3604 SM00388 His Kinase A (phosphoacceptor) domain Chro_3608 SM00448 cheY-homologous receiver domain Chro_3608 SM00862 Transcriptional regulatory protein, C terminal Chro_3618 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_3620 SM00342 helix_turn_helix, arabinose operon control protein Chro_3624 SM00342 helix_turn_helix, arabinose operon control protein Chro_3629 SM00382 ATPases associated with a variety of cellular activities Chro_3630 SM00342 helix_turn_helix, arabinose operon control protein Chro_3637 SM00382 ATPases associated with a variety of cellular activities Chro_3638 SM00342 helix_turn_helix, arabinose operon control protein Chro_3645 SM00382 ATPases associated with a variety of cellular activities Chro_3646 SM00382 ATPases associated with a variety of cellular activities Chro_3656 SM00823 Phosphopantetheine attachment site Chro_3659 SM00822 Chro_3659 Chro_3659 SM00825 Beta-ketoacyl synthase Chro_3659 SM00826 Chro_3659 Chro_3659 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Chro_3660 SM00823 Phosphopantetheine attachment site Chro_3660 SM00829 Enoylreductase Chro_3661 SM00823 Phosphopantetheine attachment site Chro_3661 SM01294 Chro_3661 Chro_3663 SM00822 Chro_3663 Chro_3663 SM00825 Beta-ketoacyl synthase Chro_3663 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Chro_3673 SM00822 Chro_3673 Chro_3673 SM00823 Phosphopantetheine attachment site Chro_3695 SM00831 Cation transporter/ATPase, N-terminus Chro_3713 SM00382 ATPases associated with a variety of cellular activities Chro_3714 SM00382 ATPases associated with a variety of cellular activities Chro_3719 SM00823 Phosphopantetheine attachment site Chro_3720 SM00822 Chro_3720 Chro_3720 SM00823 Phosphopantetheine attachment site Chro_3720 SM00825 Beta-ketoacyl synthase Chro_3720 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Chro_3723 SM00823 Phosphopantetheine attachment site Chro_3727 SM00823 Phosphopantetheine attachment site Chro_3728 SM00823 Phosphopantetheine attachment site Chro_3729 SM00823 Phosphopantetheine attachment site Chro_3733 SM00923 MbtH-like protein Chro_3740 SM01080 Chro_3740 Chro_3742 SM00028 Tetratricopeptide repeats Chro_3743 SM00912 haemagglutination activity domain Chro_3745 SM00912 haemagglutination activity domain Chro_3748 SM00382 ATPases associated with a variety of cellular activities Chro_3768 SM00487 DEAD-like helicases superfamily Chro_3782 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Chro_3789 SM00833 Cobalamin synthesis protein cobW C-terminal domain Chro_3791 SM00833 Cobalamin synthesis protein cobW C-terminal domain Chro_3813 SM00487 DEAD-like helicases superfamily Chro_3813 SM00490 helicase superfamily c-terminal domain Chro_3830 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_3832 SM00073 Histidine Phosphotransfer domain Chro_3832 SM00448 cheY-homologous receiver domain Chro_3832 SM00862 Transcriptional regulatory protein, C terminal Chro_3833 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_3833 SM00091 PAS domain Chro_3833 SM00387 Histidine kinase-like ATPases Chro_3833 SM00388 His Kinase A (phosphoacceptor) domain Chro_3833 SM00448 cheY-homologous receiver domain Chro_3835 SM00448 cheY-homologous receiver domain Chro_3836 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_3869 SM00981 Chro_3869 Chro_3881 SM00382 ATPases associated with a variety of cellular activities Chro_3907 SM00822 Chro_3907 Chro_3917 SM00829 Enoylreductase Chro_3921 SM00421 helix_turn_helix, Lux Regulon Chro_3921 SM00448 cheY-homologous receiver domain Chro_3922 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_3922 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_3922 SM00091 PAS domain Chro_3922 SM00387 Histidine kinase-like ATPases Chro_3923 SM00247 Beta/gamma crystallins Chro_3927 SM00342 helix_turn_helix, arabinose operon control protein Chro_3939 SM00327 von Willebrand factor (vWF) type A domain Chro_3940 SM00240 Forkhead associated domain Chro_3941 SM00331 Sigma factor PP2C-like phosphatases Chro_3941 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Chro_3942 SM00028 Tetratricopeptide repeats Chro_3942 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_3957 SM00487 DEAD-like helicases superfamily Chro_3957 SM00490 helicase superfamily c-terminal domain Chro_3959 SM00448 cheY-homologous receiver domain Chro_3959 SM00862 Transcriptional regulatory protein, C terminal Chro_3962 SM00909 Sporulation and spore germination Chro_3963 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_3965 SM00841 Elongation factor P, C-terminal Chro_3965 SM01185 Chro_3965 Chro_3970 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_3971 SM00257 Lysin motif Chro_3979 SM00984 UDP binding domain Chro_3981 SM00360 RNA recognition motif Chro_3985 SM00382 ATPases associated with a variety of cellular activities Chro_3993 SM00917 LeuA allosteric (dimerisation) domain Chro_3995 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_3995 SM01080 Chro_3995 Chro_3998 SM00450 Rhodanese Homology Domain Chro_4006 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4008 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4009 SM00240 Forkhead associated domain Chro_4009 SM00382 ATPases associated with a variety of cellular activities Chro_4015 SM01209 Chro_4015 Chro_4015 SM01210 Chro_4015 Chro_4016 SM00091 PAS domain Chro_4016 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_4016 SM00387 Histidine kinase-like ATPases Chro_4016 SM00388 His Kinase A (phosphoacceptor) domain Chro_4018 SM00966 SpoVT / AbrB like domain Chro_4025 SM00382 ATPases associated with a variety of cellular activities Chro_4029 SM00382 ATPases associated with a variety of cellular activities Chro_4036 SM00535 Ribonuclease III family Chro_4037 SM00967 RNA 2'-O ribose methyltransferase substrate binding Chro_4046 SM00382 ATPases associated with a variety of cellular activities Chro_4054 SM00411 bacterial (prokaryotic) histone like domain Chro_4058 SM00248 ankyrin repeats Chro_4060 SM00382 ATPases associated with a variety of cellular activities Chro_4069 SM00831 Cation transporter/ATPase, N-terminus Chro_4087 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Chro_4094 SM00567 E-Z type HEAT repeats Chro_4095 SM00052 Putative diguanylate phosphodiesterase Chro_4095 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4095 SM00091 PAS domain Chro_4095 SM00267 diguanylate cyclase Chro_4099 SM00028 Tetratricopeptide repeats Chro_4100 SM00382 ATPases associated with a variety of cellular activities Chro_4102 SM00052 Putative diguanylate phosphodiesterase Chro_4102 SM00267 diguanylate cyclase Chro_4102 SM00448 cheY-homologous receiver domain Chro_4104 SM00957 SecA DEAD-like domain Chro_4104 SM00958 SecA preprotein cross-linking domain Chro_4107 SM00930 Chro_4107 Chro_4112 SM00358 Double-stranded RNA binding motif Chro_4112 SM00535 Ribonuclease III family Chro_4127 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_4127 SM00245 tail specific protease Chro_4130 SM00382 ATPases associated with a variety of cellular activities Chro_4133 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_4146 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4146 SM00091 PAS domain Chro_4146 SM00387 Histidine kinase-like ATPases Chro_4146 SM00388 His Kinase A (phosphoacceptor) domain Chro_4146 SM00448 cheY-homologous receiver domain Chro_4146 SM01079 Chro_4146 Chro_4149 SM00487 DEAD-like helicases superfamily Chro_4149 SM00490 helicase superfamily c-terminal domain Chro_4151 SM00345 helix_turn_helix gluconate operon transcriptional repressor Chro_4158 SM00852 Probable molybdopterin binding domain Chro_4160 SM00028 Tetratricopeptide repeats Chro_4163 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4165 SM00861 Transketolase, pyrimidine binding domain Chro_4170 SM00382 ATPases associated with a variety of cellular activities Chro_4177 SM00028 Tetratricopeptide repeats Chro_4178 SM00028 Tetratricopeptide repeats Chro_4179 SM00917 LeuA allosteric (dimerisation) domain Chro_4192 SM00968 SMC proteins Flexible Hinge Domain Chro_4194 SM00387 Histidine kinase-like ATPases Chro_4194 SM00388 His Kinase A (phosphoacceptor) domain Chro_4199 SM00448 cheY-homologous receiver domain Chro_4199 SM00862 Transcriptional regulatory protein, C terminal Chro_4200 SM00448 cheY-homologous receiver domain Chro_4202 SM00448 cheY-homologous receiver domain Chro_4203 SM00260 Two component signalling adaptor domain Chro_4204 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4204 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_4204 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_4207 SM00382 ATPases associated with a variety of cellular activities Chro_4207 SM00994 ClpX C4-type zinc finger Chro_4207 SM01086 C-terminal, D2-small domain, of ClpB protein Chro_4208 SM00387 Histidine kinase-like ATPases Chro_4208 SM00388 His Kinase A (phosphoacceptor) domain Chro_4217 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_4217 SM00322 K homology RNA-binding domain Chro_4218 SM00052 Putative diguanylate phosphodiesterase Chro_4218 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4218 SM00091 PAS domain Chro_4218 SM00267 diguanylate cyclase Chro_4222 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4222 SM00091 PAS domain Chro_4222 SM00387 Histidine kinase-like ATPases Chro_4222 SM00388 His Kinase A (phosphoacceptor) domain Chro_4222 SM00448 cheY-homologous receiver domain Chro_4224 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4225 SM00873 B3/4 domain Chro_4225 SM00874 tRNA synthetase B5 domain Chro_4225 SM00896 Ferredoxin-fold anticodon binding domain Chro_4227 SM00382 ATPases associated with a variety of cellular activities Chro_4228 SM00460 Transglutaminase/protease-like homologues Chro_4229 SM00448 cheY-homologous receiver domain Chro_4230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4230 SM00387 Histidine kinase-like ATPases Chro_4230 SM00388 His Kinase A (phosphoacceptor) domain Chro_4231 SM00448 cheY-homologous receiver domain Chro_4232 SM00098 Alkaline phosphatase homologues Chro_4246 SM00831 Cation transporter/ATPase, N-terminus Chro_4247 SM00014 Acid phosphatase homologues Chro_4250 SM00155 Phospholipase D. Active site motifs. Chro_4253 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_4258 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_4258 SM00924 MgtE intracellular N domain Chro_4262 SM00448 cheY-homologous receiver domain Chro_4263 SM00448 cheY-homologous receiver domain Chro_4263 SM00862 Transcriptional regulatory protein, C terminal Chro_4264 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4264 SM00091 PAS domain Chro_4264 SM00387 Histidine kinase-like ATPases Chro_4264 SM00388 His Kinase A (phosphoacceptor) domain Chro_4265 SM00448 cheY-homologous receiver domain Chro_4285 SM01021 Bacteriorhodopsin-like protein Chro_4294 SM00028 Tetratricopeptide repeats Chro_4322 SM01094 CpcD/allophycocyanin linker domain Chro_4336 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_4342 SM00240 Forkhead associated domain Chro_4343 SM00240 Forkhead associated domain Chro_4347 SM00052 Putative diguanylate phosphodiesterase Chro_4347 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4347 SM00267 diguanylate cyclase Chro_4347 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_4375 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_4377 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_4387 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_4393 SM00478 endonuclease III Chro_4393 SM00525 Chro_4393 Chro_4398 SM00840 Chro_4398 Chro_4405 SM00890 Domain of unknown function Chro_4412 SM00448 cheY-homologous receiver domain Chro_4412 SM00862 Transcriptional regulatory protein, C terminal Chro_4413 SM00382 ATPases associated with a variety of cellular activities Chro_4419 SM00382 ATPases associated with a variety of cellular activities Chro_4433 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4440 SM00833 Cobalamin synthesis protein cobW C-terminal domain Chro_4443 SM00240 Forkhead associated domain Chro_4443 SM00320 WD40 repeats Chro_4444 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4445 SM00240 Forkhead associated domain Chro_4446 SM00062 Bacterial periplasmic substrate-binding proteins Chro_4446 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Chro_4447 SM00382 ATPases associated with a variety of cellular activities Chro_4454 SM00460 Transglutaminase/protease-like homologues Chro_4459 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4459 SM00387 Histidine kinase-like ATPases Chro_4459 SM00388 His Kinase A (phosphoacceptor) domain Chro_4459 SM00448 cheY-homologous receiver domain Chro_4460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_4460 SM00387 Histidine kinase-like ATPases Chro_4460 SM00388 His Kinase A (phosphoacceptor) domain Chro_4476 SM00028 Tetratricopeptide repeats Chro_4482 SM00382 ATPases associated with a variety of cellular activities Chro_4496 SM00240 Forkhead associated domain Chro_4498 SM00240 Forkhead associated domain Chro_4499 SM00331 Sigma factor PP2C-like phosphatases Chro_4499 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Chro_4505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4505 SM00387 Histidine kinase-like ATPases Chro_4505 SM00388 His Kinase A (phosphoacceptor) domain Chro_4508 SM00507 HNH nucleases Chro_4519 SM00382 ATPases associated with a variety of cellular activities Chro_4543 SM00248 ankyrin repeats Chro_4545 SM00642 Alpha-amylase domain Chro_4551 SM00363 S4 RNA-binding domain Chro_4556 SM00028 Tetratricopeptide repeats Chro_4557 SM00877 Chro_4557 Chro_4560 SM00930 Chro_4560 Chro_4562 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4562 SM00091 PAS domain Chro_4562 SM00387 Histidine kinase-like ATPases Chro_4562 SM00388 His Kinase A (phosphoacceptor) domain Chro_4562 SM00448 cheY-homologous receiver domain Chro_4563 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4563 SM00091 PAS domain Chro_4563 SM00387 Histidine kinase-like ATPases Chro_4567 SM00530 Helix-turn-helix XRE-family like proteins Chro_4573 SM00899 Chro_4573 Chro_4602 SM00382 ATPases associated with a variety of cellular activities Chro_4614 SM00382 ATPases associated with a variety of cellular activities Chro_4625 SM00382 ATPases associated with a variety of cellular activities Chro_4659 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_4663 SM01230 Chro_4663 Chro_4668 SM00530 Helix-turn-helix XRE-family like proteins Chro_4669 SM00382 ATPases associated with a variety of cellular activities Chro_4669 SM01086 C-terminal, D2-small domain, of ClpB protein Chro_4670 SM00798 AICARFT/IMPCHase bienzyme Chro_4670 SM00851 MGS-like domain Chro_4694 SM00487 DEAD-like helicases superfamily Chro_4694 SM00490 helicase superfamily c-terminal domain Chro_4698 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Chro_4700 SM00382 ATPases associated with a variety of cellular activities Chro_4709 SM00287 Bacterial SH3 domain homologues Chro_4709 SM00646 Chro_4709 Chro_4721 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_4726 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Chro_4731 SM01230 Chro_4731 Chro_4734 SM00822 Chro_4734 Chro_4738 SM00382 ATPases associated with a variety of cellular activities Chro_4741 SM00849 Metallo-beta-lactamase superfamily Chro_4743 SM00382 ATPases associated with a variety of cellular activities Chro_4749 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_4749 SM00245 tail specific protease Chro_4750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Chro_4756 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4756 SM00387 Histidine kinase-like ATPases Chro_4756 SM00388 His Kinase A (phosphoacceptor) domain Chro_4762 SM00448 cheY-homologous receiver domain Chro_4763 SM00073 Histidine Phosphotransfer domain Chro_4763 SM00260 Two component signalling adaptor domain Chro_4763 SM00387 Histidine kinase-like ATPases Chro_4763 SM00448 cheY-homologous receiver domain Chro_4763 SM01231 Chro_4763 Chro_4764 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_4764 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_4765 SM00260 Two component signalling adaptor domain Chro_4766 SM00448 cheY-homologous receiver domain Chro_4769 SM00829 Enoylreductase Chro_4771 SM00382 ATPases associated with a variety of cellular activities Chro_4774 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4774 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4774 SM00091 PAS domain Chro_4774 SM00267 diguanylate cyclase Chro_4784 SM00382 ATPases associated with a variety of cellular activities Chro_4785 SM00464 Found in ATP-dependent protease La (LON) Chro_4786 SM01403 Chro_4786 Chro_4788 SM00838 Elongation factor G C-terminus Chro_4788 SM00889 Elongation factor G, domain IV Chro_4794 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4824 SM00382 ATPases associated with a variety of cellular activities Chro_4831 SM00563 Phosphate acyltransferases Chro_4842 SM00347 helix_turn_helix multiple antibiotic resistance protein Chro_4845 SM00710 Parallel beta-helix repeats Chro_4846 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4846 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_4846 SM00091 PAS domain Chro_4846 SM00387 Histidine kinase-like ATPases Chro_4846 SM00388 His Kinase A (phosphoacceptor) domain Chro_4846 SM00448 cheY-homologous receiver domain Chro_4848 SM00481 DNA polymerase alpha chain like domain Chro_4876 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_4886 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_4886 SM00357 Cold shock protein domain Chro_4886 SM00955 Chro_4886 Chro_4891 SM00382 ATPases associated with a variety of cellular activities Chro_4898 SM00829 Enoylreductase Chro_4900 SM00903 Flavin reductase like domain Chro_4906 SM00028 Tetratricopeptide repeats Chro_4907 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_4909 SM00421 helix_turn_helix, Lux Regulon Chro_4909 SM00448 cheY-homologous receiver domain Chro_4918 SM00382 ATPases associated with a variety of cellular activities Chro_4921 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_4922 SM00387 Histidine kinase-like ATPases Chro_4922 SM00388 His Kinase A (phosphoacceptor) domain Chro_4922 SM00448 cheY-homologous receiver domain Chro_4923 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_4923 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_4923 SM00387 Histidine kinase-like ATPases Chro_4923 SM00388 His Kinase A (phosphoacceptor) domain Chro_4923 SM00448 cheY-homologous receiver domain Chro_4925 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_4933 SM00788 Adenylosuccinate synthetase Chro_4935 SM00967 RNA 2'-O ribose methyltransferase substrate binding Chro_4939 SM00062 Bacterial periplasmic substrate-binding proteins Chro_4949 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Chro_4952 SM00345 helix_turn_helix gluconate operon transcriptional repressor Chro_4968 SM00901 Chro_4968 Chro_4982 SM00988 UreE urease accessory protein, N-terminal domain Chro_4988 SM00116 Domain in cystathionine beta-synthase and other proteins. Chro_4994 SM00100 Cyclic nucleotide-monophosphate binding domain Chro_4994 SM00387 Histidine kinase-like ATPases Chro_4998 SM00382 ATPases associated with a variety of cellular activities Chro_5010 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Chro_5011 SM00947 Carbonic anhydrase Chro_5021 SM00360 RNA recognition motif Chro_5031 SM00857 Resolvase, N terminal domain Chro_5034 SM00248 ankyrin repeats Chro_5039 SM00849 Metallo-beta-lactamase superfamily Chro_5072 SM00320 WD40 repeats Chro_5073 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_5074 SM01234 Chro_5074 Chro_5077 SM00530 Helix-turn-helix XRE-family like proteins Chro_5084 SM00240 Forkhead associated domain Chro_5085 SM00052 Putative diguanylate phosphodiesterase Chro_5086 SM00849 Metallo-beta-lactamase superfamily Chro_5093 SM00947 Carbonic anhydrase Chro_5098 SM00387 Histidine kinase-like ATPases Chro_5107 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5107 SM00388 His Kinase A (phosphoacceptor) domain Chro_5109 SM01329 Chro_5109 Chro_5112 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_5122 SM00872 Alpha mannosidase, middle domain Chro_5133 SM00073 Histidine Phosphotransfer domain Chro_5133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_5133 SM00387 Histidine kinase-like ATPases Chro_5133 SM00388 His Kinase A (phosphoacceptor) domain Chro_5133 SM00448 cheY-homologous receiver domain Chro_5134 SM00052 Putative diguanylate phosphodiesterase Chro_5134 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_5134 SM00091 PAS domain Chro_5134 SM00267 diguanylate cyclase Chro_5134 SM00448 cheY-homologous receiver domain Chro_5145 SM00710 Parallel beta-helix repeats Chro_5151 SM00322 K homology RNA-binding domain Chro_5155 SM00342 helix_turn_helix, arabinose operon control protein Chro_5167 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_5168 SM00487 DEAD-like helicases superfamily Chro_5168 SM00490 helicase superfamily c-terminal domain Chro_5173 SM00244 prohibitin homologues Chro_5174 SM00845 GatB domain Chro_5175 SM00342 helix_turn_helix, arabinose operon control protein Chro_5177 SM00342 helix_turn_helix, arabinose operon control protein Chro_5180 SM00387 Histidine kinase-like ATPases Chro_5180 SM00448 cheY-homologous receiver domain Chro_5181 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5181 SM00091 PAS domain Chro_5181 SM00387 Histidine kinase-like ATPases Chro_5181 SM00388 His Kinase A (phosphoacceptor) domain Chro_5185 SM00448 cheY-homologous receiver domain Chro_5187 SM00448 cheY-homologous receiver domain Chro_5199 SM00950 Chro_5199 Chro_5201 SM00530 Helix-turn-helix XRE-family like proteins Chro_5205 SM01211 Chro_5205 Chro_5208 SM00244 prohibitin homologues Chro_5221 SM00387 Histidine kinase-like ATPases Chro_5221 SM00388 His Kinase A (phosphoacceptor) domain Chro_5221 SM00448 cheY-homologous receiver domain Chro_5230 SM01133 Chro_5230 Chro_5248 SM00382 ATPases associated with a variety of cellular activities Chro_5269 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Chro_5269 SM00481 DNA polymerase alpha chain like domain Chro_5281 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_5281 SM00387 Histidine kinase-like ATPases Chro_5289 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Chro_5306 SM00448 cheY-homologous receiver domain Chro_5308 SM00465 GIY-YIG type nucleases (URI domain) Chro_5315 SM00961 Ribulose bisphosphate carboxylase, small chain Chro_5317 SM00961 Ribulose bisphosphate carboxylase, small chain Chro_5322 SM00642 Alpha-amylase domain Chro_5326 SM00912 haemagglutination activity domain Chro_5329 SM00028 Tetratricopeptide repeats Chro_5330 SM00382 ATPases associated with a variety of cellular activities Chro_5332 SM00855 Phosphoglycerate mutase family Chro_5334 SM00422 helix_turn_helix, mercury resistance Chro_5338 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Chro_5347 SM00382 ATPases associated with a variety of cellular activities Chro_5353 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5353 SM00267 diguanylate cyclase Chro_5357 SM00855 Phosphoglycerate mutase family Chro_5360 SM00240 Forkhead associated domain Chro_5367 SM00091 PAS domain Chro_5367 SM00387 Histidine kinase-like ATPases Chro_5367 SM00388 His Kinase A (phosphoacceptor) domain Chro_5367 SM00448 cheY-homologous receiver domain Chro_5368 SM00448 cheY-homologous receiver domain Chro_5369 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_5369 SM00091 PAS domain Chro_5369 SM00387 Histidine kinase-like ATPases Chro_5369 SM00388 His Kinase A (phosphoacceptor) domain Chro_5381 SM00387 Histidine kinase-like ATPases Chro_5381 SM00388 His Kinase A (phosphoacceptor) domain Chro_5381 SM00448 cheY-homologous receiver domain Chro_5382 SM00448 cheY-homologous receiver domain Chro_5383 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5383 SM00387 Histidine kinase-like ATPases Chro_5383 SM00388 His Kinase A (phosphoacceptor) domain Chro_5390 SM00387 Histidine kinase-like ATPases Chro_5390 SM00388 His Kinase A (phosphoacceptor) domain Chro_5390 SM00448 cheY-homologous receiver domain Chro_5392 SM00448 cheY-homologous receiver domain Chro_5393 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5393 SM00387 Histidine kinase-like ATPases Chro_5393 SM00388 His Kinase A (phosphoacceptor) domain Chro_5395 SM00448 cheY-homologous receiver domain Chro_5395 SM00862 Transcriptional regulatory protein, C terminal Chro_5400 SM00563 Phosphate acyltransferases Chro_5403 SM00877 Chro_5403 Chro_5412 SM00360 RNA recognition motif Chro_5413 SM00341 Helicase and RNase D C-terminal Chro_5413 SM00487 DEAD-like helicases superfamily Chro_5413 SM00490 helicase superfamily c-terminal domain Chro_5413 SM00956 Chro_5413 Chro_5417 SM00448 cheY-homologous receiver domain Chro_5418 SM00448 cheY-homologous receiver domain Chro_5419 SM00260 Two component signalling adaptor domain Chro_5420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Chro_5420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_5421 SM00073 Histidine Phosphotransfer domain Chro_5421 SM00260 Two component signalling adaptor domain Chro_5421 SM00387 Histidine kinase-like ATPases Chro_5421 SM00448 cheY-homologous receiver domain Chro_5421 SM01231 Chro_5421 Chro_5424 SM00729 Elongator protein 3, MiaB family, Radical SAM Chro_5425 SM00363 S4 RNA-binding domain Chro_5425 SM01390 Chro_5425 Chro_5428 SM00836 DALR anticodon binding domain Chro_5429 SM00419 helix_turn_helix, cAMP Regulatory protein Chro_5438 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_5450 SM00316 Ribosomal protein S1-like RNA-binding domain Chro_5464 SM00271 DnaJ molecular chaperone homology domain Chro_5470 SM00382 ATPases associated with a variety of cellular activities Chro_5470 SM01086 C-terminal, D2-small domain, of ClpB protein Chro_5472 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5472 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_5472 SM00091 PAS domain Chro_5472 SM00387 Histidine kinase-like ATPases Chro_5472 SM00388 His Kinase A (phosphoacceptor) domain Chro_5472 SM00448 cheY-homologous receiver domain Chro_5476 SM00382 ATPases associated with a variety of cellular activities Chro_5479 SM00318 Staphylococcal nuclease homologues Chro_5481 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_5488 SM00986 Uracil DNA glycosylase superfamily Chro_5488 SM00987 UreE urease accessory protein, C-terminal domain Chro_5490 SM00382 ATPases associated with a variety of cellular activities Chro_5496 SM00232 JAB/MPN domain Chro_5497 SM00450 Rhodanese Homology Domain Chro_5500 SM00387 Histidine kinase-like ATPases Chro_5500 SM00388 His Kinase A (phosphoacceptor) domain Chro_5500 SM00448 cheY-homologous receiver domain Chro_5503 SM00052 Putative diguanylate phosphodiesterase Chro_5503 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5503 SM00220 Serine/Threonine protein kinases, catalytic domain Chro_5503 SM00267 diguanylate cyclase Chro_5506 SM00382 ATPases associated with a variety of cellular activities Chro_5510 SM01001 AIR carboxylase Chro_5524 SM00382 ATPases associated with a variety of cellular activities Chro_5527 SM00382 ATPases associated with a variety of cellular activities Chro_5530 SM00833 Cobalamin synthesis protein cobW C-terminal domain Chro_5531 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5531 SM00387 Histidine kinase-like ATPases Chro_5531 SM00388 His Kinase A (phosphoacceptor) domain Chro_5532 SM00448 cheY-homologous receiver domain Chro_5533 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Chro_5533 SM00091 PAS domain Chro_5533 SM00387 Histidine kinase-like ATPases Chro_5533 SM00388 His Kinase A (phosphoacceptor) domain Chro_5533 SM00448 cheY-homologous receiver domain Chro_5537 SM00382 ATPases associated with a variety of cellular activities Chro_5540 SM00062 Bacterial periplasmic substrate-binding proteins Chro_5558 SM00028 Tetratricopeptide repeats Chro_5572 SM00028 Tetratricopeptide repeats Chro_5576 SM00342 helix_turn_helix, arabinose operon control protein Chro_5584 SM00849 Metallo-beta-lactamase superfamily Chro_5596 SM00271 DnaJ molecular chaperone homology domain Chro_5598 SM00836 DALR anticodon binding domain Chro_5598 SM01016 Arginyl tRNA synthetase N terminal dom Chro_5605 SM01120 Chro_5605 Chro_5608 SM00448 cheY-homologous receiver domain Chro_5610 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_5611 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Chro_5613 SM00822 Chro_5613 Chro_5624 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Chro_5624 SM00267 diguanylate cyclase Chro_5626 SM00387 Histidine kinase-like ATPases Chro_5626 SM00388 His Kinase A (phosphoacceptor) domain Chro_5627 SM00448 cheY-homologous receiver domain Chro_5627 SM00862 Transcriptional regulatory protein, C terminal Chro_5634 SM00448 cheY-homologous receiver domain Chro_5634 SM00862 Transcriptional regulatory protein, C terminal Chro_5637 SM00387 Histidine kinase-like ATPases Chro_5637 SM00388 His Kinase A (phosphoacceptor) domain Chro_5638 SM00448 cheY-homologous receiver domain Chro_5638 SM00862 Transcriptional regulatory protein, C terminal Chro_5651 SM00422 helix_turn_helix, mercury resistance Chro_5666 SM00422 helix_turn_helix, mercury resistance Chro_5674 SM00028 Tetratricopeptide repeats Chro_5674 SM00421 helix_turn_helix, Lux Regulon Chro_5679 SM01321 Chro_5679 Chro_5686 SM00028 Tetratricopeptide repeats Chro_5696 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_5698 SM00756 Chro_5698 Chro_5699 SM00849 Metallo-beta-lactamase superfamily Chro_5704 SM00909 Sporulation and spore germination Chro_5706 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_5708 SM00756 Chro_5708 Chro_5720 SM00448 cheY-homologous receiver domain Chro_5720 SM00862 Transcriptional regulatory protein, C terminal Chro_5721 SM00387 Histidine kinase-like ATPases Chro_5721 SM00388 His Kinase A (phosphoacceptor) domain Chro_5733 SM00046 Diacylglycerol kinase catalytic domain (presumed) Chro_5738 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Chro_5745 SM00470 ParB-like nuclease domain Chro_5749 SM00320 WD40 repeats Chro_5753 SM00421 helix_turn_helix, Lux Regulon Chro_5757 SM00829 Enoylreductase Chro_5785 SM00953 Chro_5785 Chro_5809 SM00387 Histidine kinase-like ATPases Chro_5810 SM00421 helix_turn_helix, Lux Regulon Chro_5810 SM00448 cheY-homologous receiver domain Chro_5817 SM00507 HNH nucleases Chro_5818 SM00942 Primase C terminal 1 (PriCT-1) Chro_5822 SM00507 HNH nucleases Chro_5825 SM00382 ATPases associated with a variety of cellular activities Chro_5850 SM00642 Alpha-amylase domain Chro_5874 SM01321 Chro_5874 Chro_5877 SM00327 von Willebrand factor (vWF) type A domain Chro_5879 SM00530 Helix-turn-helix XRE-family like proteins Chro_5889 SM00535 Ribonuclease III family Chro_5890 SM00530 Helix-turn-helix XRE-family like proteins Chro_5891 SM00487 DEAD-like helicases superfamily Chro_5891 SM00490 helicase superfamily c-terminal domain Chro_5898 SM00966 SpoVT / AbrB like domain Chro_5899 SM00487 DEAD-like helicases superfamily Chro_5899 SM00490 helicase superfamily c-terminal domain Chro_5907 SM00480 DNA polymerase III beta subunit Chro_5908 SM00382 ATPases associated with a variety of cellular activities Chro_5909 SM00486 DNA polymerase type-B family Chro_5918 SM00448 cheY-homologous receiver domain Chro_5918 SM00862 Transcriptional regulatory protein, C terminal Chro_5919 SM00387 Histidine kinase-like ATPases Chro_5919 SM00388 His Kinase A (phosphoacceptor) domain Chro_5921 SM00448 cheY-homologous receiver domain Chro_5921 SM00862 Transcriptional regulatory protein, C terminal Chro_5922 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Chro_5922 SM00387 Histidine kinase-like ATPases Chro_5922 SM00388 His Kinase A (phosphoacceptor) domain Chro_5932 SM00360 RNA recognition motif Chro_5957 SM00382 ATPases associated with a variety of cellular activities Chro_5958 SM00382 ATPases associated with a variety of cellular activities Chro_5964 SM00387 Histidine kinase-like ATPases Chro_5964 SM00388 His Kinase A (phosphoacceptor) domain