CEY12_00005	SM00382	ATPases associated with a variety of cellular activities
CEY12_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CEY12_00010	SM00226	Low molecular weight phosphatase family
CEY12_00035	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00095	SM00642	Alpha-amylase domain
CEY12_00155	SM00798	AICARFT/IMPCHase bienzyme
CEY12_00155	SM00851	MGS-like domain
CEY12_00160	SM01209	CEY12_00160
CEY12_00160	SM01210	CEY12_00160
CEY12_00195	SM00487	DEAD-like helicases superfamily
CEY12_00195	SM00490	helicase superfamily c-terminal domain
CEY12_00200	SM00028	Tetratricopeptide repeats
CEY12_00310	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_00340	SM00014	Acid phosphatase homologues
CEY12_00345	SM00028	Tetratricopeptide repeats
CEY12_00370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_00370	SM00954	Region found in RelA / SpoT proteins
CEY12_00395	SM00448	cheY-homologous receiver domain
CEY12_00400	SM00387	Histidine kinase-like ATPases
CEY12_00400	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_00440	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CEY12_00470	SM00344	helix_turn_helix ASNC type
CEY12_00480	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CEY12_00490	SM00851	MGS-like domain
CEY12_00490	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CEY12_00515	SM00382	ATPases associated with a variety of cellular activities
CEY12_00535	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00620	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00620	SM00871	Bacterial transcription activator, effector binding domain
CEY12_00635	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_00645	SM00849	Metallo-beta-lactamase superfamily
CEY12_00655	SM00448	cheY-homologous receiver domain
CEY12_00655	SM00850	LytTr DNA-binding domain
CEY12_00700	SM00028	Tetratricopeptide repeats
CEY12_00720	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00740	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00775	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00810	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_00875	SM00060	Fibronectin type 3 domain
CEY12_00880	SM00028	Tetratricopeptide repeats
CEY12_00895	SM00387	Histidine kinase-like ATPases
CEY12_00900	SM00382	ATPases associated with a variety of cellular activities
CEY12_00900	SM00448	cheY-homologous receiver domain
CEY12_00910	SM00382	ATPases associated with a variety of cellular activities
CEY12_00925	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_00940	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01065	SM00245	tail specific protease
CEY12_01075	SM00387	Histidine kinase-like ATPases
CEY12_01075	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_01075	SM00448	cheY-homologous receiver domain
CEY12_01080	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CEY12_01080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CEY12_01080	SM00387	Histidine kinase-like ATPases
CEY12_01080	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_01080	SM00448	cheY-homologous receiver domain
CEY12_01085	SM00448	cheY-homologous receiver domain
CEY12_01090	SM00138	Methyltransferase, chemotaxis proteins 
CEY12_01100	SM00448	cheY-homologous receiver domain
CEY12_01105	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_01185	SM00387	Histidine kinase-like ATPases
CEY12_01220	SM00487	DEAD-like helicases superfamily
CEY12_01240	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_01255	SM00028	Tetratricopeptide repeats
CEY12_01270	SM00028	Tetratricopeptide repeats
CEY12_01270	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01375	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01415	SM00382	ATPases associated with a variety of cellular activities
CEY12_01430	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01465	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_01475	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_01485	SM00421	helix_turn_helix, Lux Regulon
CEY12_01485	SM00448	cheY-homologous receiver domain
CEY12_01490	SM00387	Histidine kinase-like ATPases
CEY12_01495	SM00935	Outer membrane protein (OmpH-like)
CEY12_01525	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01530	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01560	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_01570	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01575	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01610	SM00448	cheY-homologous receiver domain
CEY12_01610	SM00850	LytTr DNA-binding domain
CEY12_01620	SM00822	CEY12_01620
CEY12_01620	SM00823	Phosphopantetheine attachment site
CEY12_01620	SM00825	Beta-ketoacyl synthase
CEY12_01620	SM00826	CEY12_01620
CEY12_01620	SM01294	CEY12_01620
CEY12_01625	SM00822	CEY12_01625
CEY12_01625	SM00823	Phosphopantetheine attachment site
CEY12_01625	SM00825	Beta-ketoacyl synthase
CEY12_01625	SM00826	CEY12_01625
CEY12_01630	SM00823	Phosphopantetheine attachment site
CEY12_01630	SM00825	Beta-ketoacyl synthase
CEY12_01635	SM00822	CEY12_01635
CEY12_01635	SM00823	Phosphopantetheine attachment site
CEY12_01635	SM00825	Beta-ketoacyl synthase
CEY12_01635	SM00826	CEY12_01635
CEY12_01635	SM01294	CEY12_01635
CEY12_01640	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CEY12_01645	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CEY12_01650	SM00849	Metallo-beta-lactamase superfamily
CEY12_01685	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01720	SM00421	helix_turn_helix, Lux Regulon
CEY12_01720	SM00448	cheY-homologous receiver domain
CEY12_01725	SM00387	Histidine kinase-like ATPases
CEY12_01735	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01750	SM00382	ATPases associated with a variety of cellular activities
CEY12_01795	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CEY12_01800	SM00098	Alkaline phosphatase homologues
CEY12_01850	SM00448	cheY-homologous receiver domain
CEY12_01850	SM00850	LytTr DNA-binding domain
CEY12_01900	SM00421	helix_turn_helix, Lux Regulon
CEY12_01905	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01925	SM00382	ATPases associated with a variety of cellular activities
CEY12_01935	SM00830	Chorismate mutase type II
CEY12_01945	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_01955	SM00562	CEY12_01955
CEY12_01960	SM00812	Alpha-L-fucosidase
CEY12_02160	SM01217	CEY12_02160
CEY12_02215	SM00364	Leucine-rich repeats, bacterial type
CEY12_02215	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CEY12_02275	SM00354	helix_turn _helix lactose operon repressor
CEY12_02315	SM00382	ATPases associated with a variety of cellular activities
CEY12_02315	SM00448	cheY-homologous receiver domain
CEY12_02340	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_02350	SM00360	RNA recognition motif
CEY12_02375	SM00382	ATPases associated with a variety of cellular activities
CEY12_02460	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_02510	SM00420	helix_turn_helix, Deoxyribose operon repressor
CEY12_02510	SM01134	CEY12_02510
CEY12_02550	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_02560	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_02660	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_02665	SM00382	ATPases associated with a variety of cellular activities
CEY12_02745	SM00843	CEY12_02745
CEY12_02775	SM00244	prohibitin homologues
CEY12_02840	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_02955	SM00108	Bulb-type mannose-specific lectin
CEY12_02970	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CEY12_03005	SM01329	CEY12_03005
CEY12_03045	SM00060	Fibronectin type 3 domain
CEY12_03055	SM00060	Fibronectin type 3 domain
CEY12_03105	SM00363	S4 RNA-binding domain
CEY12_03120	SM00487	DEAD-like helicases superfamily
CEY12_03120	SM00490	helicase superfamily c-terminal domain
CEY12_03145	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_03160	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_03160	SM00419	helix_turn_helix, cAMP Regulatory protein
CEY12_03165	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_03165	SM00419	helix_turn_helix, cAMP Regulatory protein
CEY12_03195	SM00448	cheY-homologous receiver domain
CEY12_03195	SM00862	Transcriptional regulatory protein, C terminal
CEY12_03200	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_03220	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_03225	SM00014	Acid phosphatase homologues
CEY12_03230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_03240	SM01130	CEY12_03240
CEY12_03260	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03275	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03295	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_03305	SM00450	Rhodanese Homology Domain
CEY12_03335	SM00849	Metallo-beta-lactamase superfamily
CEY12_03345	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_03370	SM00487	DEAD-like helicases superfamily
CEY12_03370	SM00490	helicase superfamily c-terminal domain
CEY12_03410	SM01059	Chloramphenicol acetyltransferase
CEY12_03425	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03430	SM00245	tail specific protease
CEY12_03445	SM01006	Siderophore biosynthesis protein domain
CEY12_03485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_03505	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_03505	SM00876	Biotin and Thiamin Synthesis associated domain
CEY12_03515	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03520	SM00822	CEY12_03520
CEY12_03535	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03550	SM00116	Domain in cystathionine beta-synthase and other proteins.
CEY12_03555	SM00448	cheY-homologous receiver domain
CEY12_03555	SM00862	Transcriptional regulatory protein, C terminal
CEY12_03560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CEY12_03560	SM00387	Histidine kinase-like ATPases
CEY12_03560	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_03570	SM00831	Cation transporter/ATPase, N-terminus
CEY12_03615	SM00867	YceI-like domain 
CEY12_03665	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_03690	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03700	SM00448	cheY-homologous receiver domain
CEY12_03700	SM00850	LytTr DNA-binding domain
CEY12_03750	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_03825	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_03835	SM00481	DNA polymerase alpha chain like domain
CEY12_03855	SM00014	Acid phosphatase homologues
CEY12_03875	SM00420	helix_turn_helix, Deoxyribose operon repressor
CEY12_03875	SM01134	CEY12_03875
CEY12_03890	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03905	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_03935	SM00382	ATPases associated with a variety of cellular activities
CEY12_03940	SM00382	ATPases associated with a variety of cellular activities
CEY12_03955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CEY12_03985	SM00448	cheY-homologous receiver domain
CEY12_03985	SM00850	LytTr DNA-binding domain
CEY12_04015	SM01235	CEY12_04015
CEY12_04060	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_04065	SM00822	CEY12_04065
CEY12_04085	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_04120	SM01011	Aminopeptidase P, N-terminal domain
CEY12_04125	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_04130	SM01130	CEY12_04130
CEY12_04275	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_04340	SM00829	Enoylreductase
CEY12_04345	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CEY12_04350	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_04435	SM00466	SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
CEY12_04440	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CEY12_04490	SM00529	Helix-turn-helix diphteria tox regulatory element
CEY12_04505	SM00344	helix_turn_helix ASNC type
CEY12_04510	SM00849	Metallo-beta-lactamase superfamily
CEY12_04605	SM00047	Lysozyme subfamily 2
CEY12_04610	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_04625	SM00382	ATPases associated with a variety of cellular activities
CEY12_04630	SM00904	Riboflavin kinase
CEY12_04715	SM00849	Metallo-beta-lactamase superfamily
CEY12_04745	SM00434	DNA Topoisomerase IV
CEY12_04860	SM00042	Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein.
CEY12_04905	SM00893	Electron transfer flavoprotein domain
CEY12_04910	SM00893	Electron transfer flavoprotein domain
CEY12_04975	SM01091	Transporter associated domain
CEY12_05015	SM00382	ATPases associated with a variety of cellular activities
CEY12_05015	SM00962	SRP54-type protein, GTPase domain
CEY12_05015	SM00963	SRP54-type protein, helical bundle domain
CEY12_05075	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05115	SM00479	CEY12_05115
CEY12_05130	SM00861	Transketolase, pyrimidine binding domain
CEY12_05150	SM00642	Alpha-amylase domain
CEY12_05155	SM01065	Starch binding domain
CEY12_05245	SM00341	Helicase and RNase D C-terminal
CEY12_05275	SM00382	ATPases associated with a variety of cellular activities
CEY12_05315	SM00344	helix_turn_helix ASNC type
CEY12_05325	SM00271	DnaJ molecular chaperone homology domain
CEY12_05400	SM00341	Helicase and RNase D C-terminal
CEY12_05400	SM00487	DEAD-like helicases superfamily
CEY12_05400	SM00490	helicase superfamily c-terminal domain
CEY12_05400	SM00956	CEY12_05400
CEY12_05405	SM00116	Domain in cystathionine beta-synthase and other proteins.
CEY12_05430	SM00387	Histidine kinase-like ATPases
CEY12_05555	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05565	SM00434	DNA Topoisomerase IV
CEY12_05575	SM00387	Histidine kinase-like ATPases
CEY12_05575	SM00433	TopoisomeraseII
CEY12_05585	SM00448	cheY-homologous receiver domain
CEY12_05585	SM00850	LytTr DNA-binding domain
CEY12_05615	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05645	SM00838	Elongation factor G C-terminus
CEY12_05660	SM00867	YceI-like domain 
CEY12_05670	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CEY12_05670	SM00316	Ribosomal protein S1-like RNA-binding domain
CEY12_05670	SM00732	Likely ribonuclease with RNase H fold.
CEY12_05695	SM00487	DEAD-like helicases superfamily
CEY12_05695	SM00490	helicase superfamily c-terminal domain
CEY12_05700	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05715	SM00448	cheY-homologous receiver domain
CEY12_05715	SM00850	LytTr DNA-binding domain
CEY12_05745	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05775	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05810	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05880	SM01350	CEY12_05880
CEY12_05890	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05915	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_05945	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_06030	SM00507	HNH nucleases
CEY12_06370	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_06390	SM00028	Tetratricopeptide repeats
CEY12_06395	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CEY12_06430	SM00244	prohibitin homologues
CEY12_06435	SM00382	ATPases associated with a variety of cellular activities
CEY12_06450	SM01260	CEY12_06450
CEY12_06475	SM00382	ATPases associated with a variety of cellular activities
CEY12_06480	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_06485	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CEY12_06485	SM01232	CEY12_06485
CEY12_06490	SM00448	cheY-homologous receiver domain
CEY12_06490	SM00850	LytTr DNA-binding domain
CEY12_06530	SM00382	ATPases associated with a variety of cellular activities
CEY12_06555	SM00271	DnaJ molecular chaperone homology domain
CEY12_06580	SM00387	Histidine kinase-like ATPases
CEY12_06580	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_06585	SM00448	cheY-homologous receiver domain
CEY12_06585	SM00862	Transcriptional regulatory protein, C terminal
CEY12_06655	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_06705	SM01235	CEY12_06705
CEY12_06720	SM00448	cheY-homologous receiver domain
CEY12_06720	SM00850	LytTr DNA-binding domain
CEY12_06735	SM00849	Metallo-beta-lactamase superfamily
CEY12_06750	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_06765	SM00245	tail specific protease
CEY12_06845	SM00606	Cellulose Binding Domain Type IV
CEY12_06875	SM00873	B3/4 domain
CEY12_06875	SM00874	tRNA synthetase B5 domain
CEY12_06875	SM00896	Ferredoxin-fold anticodon binding domain
CEY12_06880	SM00480	DNA polymerase III beta subunit
CEY12_06905	SM01211	CEY12_06905
CEY12_06915	SM00998	Adenylosuccinate lyase C-terminus
CEY12_06925	SM01217	CEY12_06925
CEY12_07065	SM01360	CEY12_07065
CEY12_07155	SM00835	Cupin
CEY12_07160	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_07160	SM00895	CEY12_07160
CEY12_07165	SM00419	helix_turn_helix, cAMP Regulatory protein
CEY12_07190	SM00382	ATPases associated with a variety of cellular activities
CEY12_07225	SM00812	Alpha-L-fucosidase
CEY12_07260	SM01022	CEY12_07260
CEY12_07265	SM00861	Transketolase, pyrimidine binding domain
CEY12_07335	SM00986	Uracil DNA glycosylase superfamily
CEY12_07335	SM00987	UreE urease accessory protein, C-terminal domain 
CEY12_07390	SM00354	helix_turn _helix lactose operon repressor
CEY12_07415	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CEY12_07415	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CEY12_07415	SM00493	CEY12_07415
CEY12_07490	SM00382	ATPases associated with a variety of cellular activities
CEY12_07490	SM00930	CEY12_07490
CEY12_07505	SM01217	CEY12_07505
CEY12_07530	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_07550	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_07565	SM00344	helix_turn_helix ASNC type
CEY12_07600	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_07610	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_07615	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_07625	SM00382	ATPases associated with a variety of cellular activities
CEY12_07680	SM00387	Histidine kinase-like ATPases
CEY12_07685	SM00421	helix_turn_helix, Lux Regulon
CEY12_07685	SM00448	cheY-homologous receiver domain
CEY12_07770	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_07810	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_07875	SM00825	Beta-ketoacyl synthase
CEY12_07875	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CEY12_07880	SM00822	CEY12_07880
CEY12_07880	SM00825	Beta-ketoacyl synthase
CEY12_07880	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CEY12_07925	SM00829	Enoylreductase
CEY12_07940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_07950	SM00014	Acid phosphatase homologues
CEY12_08000	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_08035	SM00988	UreE urease accessory protein, N-terminal domain
CEY12_08135	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_08260	SM00996	S-adenosyl-L-homocysteine hydrolase
CEY12_08260	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CEY12_08285	SM01001	AIR carboxylase
CEY12_08410	SM00986	Uracil DNA glycosylase superfamily
CEY12_08410	SM00987	UreE urease accessory protein, C-terminal domain 
CEY12_08420	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CEY12_08420	SM00534	ATPase domain of DNA mismatch repair MUTS family
CEY12_08425	SM00060	Fibronectin type 3 domain
CEY12_08460	SM00563	Phosphate acyltransferases
CEY12_08495	SM00028	Tetratricopeptide repeats
CEY12_08500	SM00327	von Willebrand factor (vWF) type A domain
CEY12_08505	SM00327	von Willebrand factor (vWF) type A domain
CEY12_08535	SM01290	CEY12_08535
CEY12_08555	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CEY12_08620	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CEY12_08635	SM00563	Phosphate acyltransferases
CEY12_08655	SM00421	helix_turn_helix, Lux Regulon
CEY12_08665	SM00382	ATPases associated with a variety of cellular activities
CEY12_08680	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_08725	SM00271	DnaJ molecular chaperone homology domain
CEY12_08745	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_08800	SM00642	Alpha-amylase domain
CEY12_08810	SM00387	Histidine kinase-like ATPases
CEY12_08810	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_08815	SM00448	cheY-homologous receiver domain
CEY12_08815	SM00862	Transcriptional regulatory protein, C terminal
CEY12_08840	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_08855	SM00047	Lysozyme subfamily 2
CEY12_08880	SM00060	Fibronectin type 3 domain
CEY12_08915	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_08925	SM01321	CEY12_08925
CEY12_08960	SM00382	ATPases associated with a variety of cellular activities
CEY12_09050	SM00028	Tetratricopeptide repeats
CEY12_09060	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_09105	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CEY12_09105	SM00387	Histidine kinase-like ATPases
CEY12_09105	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_09205	SM00382	ATPases associated with a variety of cellular activities
CEY12_09250	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_09340	SM00421	helix_turn_helix, Lux Regulon
CEY12_09340	SM00448	cheY-homologous receiver domain
CEY12_09350	SM00244	prohibitin homologues
CEY12_09405	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CEY12_09420	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_09445	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CEY12_09475	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_09485	SM00382	ATPases associated with a variety of cellular activities
CEY12_09505	SM00382	ATPases associated with a variety of cellular activities
CEY12_09520	SM01004	Delta-aminolevulinic acid dehydratase
CEY12_09530	SM00382	ATPases associated with a variety of cellular activities
CEY12_09545	SM00881	CoA binding domain
CEY12_09555	SM00841	Elongation factor P, C-terminal
CEY12_09555	SM01185	CEY12_09555
CEY12_09575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_09580	SM00245	tail specific protease
CEY12_09585	SM00448	cheY-homologous receiver domain
CEY12_09615	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_09780	SM00984	UDP binding domain
CEY12_09785	SM00984	UDP binding domain
CEY12_09850	SM00382	ATPases associated with a variety of cellular activities
CEY12_09895	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_09980	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_10030	SM00028	Tetratricopeptide repeats
CEY12_10045	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_10110	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_10115	SM00829	Enoylreductase
CEY12_10140	SM00411	bacterial (prokaryotic) histone like domain
CEY12_10185	SM00861	Transketolase, pyrimidine binding domain
CEY12_10205	SM00479	CEY12_10205
CEY12_10265	SM00382	ATPases associated with a variety of cellular activities
CEY12_10275	SM00421	helix_turn_helix, Lux Regulon
CEY12_10275	SM00448	cheY-homologous receiver domain
CEY12_10280	SM00387	Histidine kinase-like ATPases
CEY12_10360	SM01321	CEY12_10360
CEY12_10375	SM00935	Outer membrane protein (OmpH-like)
CEY12_10390	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_10430	SM01235	CEY12_10430
CEY12_10440	SM00642	Alpha-amylase domain
CEY12_10545	SM00382	ATPases associated with a variety of cellular activities
CEY12_10545	SM00962	SRP54-type protein, GTPase domain
CEY12_10545	SM00963	SRP54-type protein, helical bundle domain
CEY12_10575	SM00487	DEAD-like helicases superfamily
CEY12_10575	SM00490	helicase superfamily c-terminal domain
CEY12_10595	SM00235	Zinc-dependent metalloprotease
CEY12_10615	SM00932	Scaffold protein Nfu/NifU N terminal
CEY12_10645	SM00849	Metallo-beta-lactamase superfamily
CEY12_10665	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_10705	SM00072	Guanylate kinase homologues.
CEY12_10745	SM00905	Dihydroneopterin aldolase
CEY12_10775	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CEY12_10785	SM00060	Fibronectin type 3 domain
CEY12_10820	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CEY12_10850	SM01133	CEY12_10850
CEY12_10855	SM00344	helix_turn_helix ASNC type
CEY12_10875	SM00641	Glycosyl hydrolases family 25
CEY12_10885	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_10895	SM00382	ATPases associated with a variety of cellular activities
CEY12_10960	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CEY12_10965	SM00421	helix_turn_helix, Lux Regulon
CEY12_10975	SM00382	ATPases associated with a variety of cellular activities
CEY12_11005	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_11070	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_11100	SM00836	DALR anticodon binding domain
CEY12_11100	SM01016	Arginyl tRNA synthetase N terminal dom
CEY12_11145	SM00867	YceI-like domain 
CEY12_11155	SM00382	ATPases associated with a variety of cellular activities
CEY12_11160	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_11190	SM00448	cheY-homologous receiver domain
CEY12_11190	SM00850	LytTr DNA-binding domain
CEY12_11220	SM00883	Chaperonin 10 Kd subunit
CEY12_11260	SM00612	CEY12_11260
CEY12_11285	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_11400	SM00028	Tetratricopeptide repeats
CEY12_11405	SM00448	cheY-homologous receiver domain
CEY12_11405	SM00862	Transcriptional regulatory protein, C terminal
CEY12_11410	SM00387	Histidine kinase-like ATPases
CEY12_11410	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_11465	SM00382	ATPases associated with a variety of cellular activities
CEY12_11505	SM00642	Alpha-amylase domain
CEY12_11525	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_11535	SM00829	Enoylreductase
CEY12_11580	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_11600	SM00248	ankyrin repeats
CEY12_11620	SM00419	helix_turn_helix, cAMP Regulatory protein
CEY12_11630	SM00663	RNA polymerase I subunit A N-terminus
CEY12_11660	SM00649	Ribosomal protein L11/L12
CEY12_11685	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CEY12_11685	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CEY12_11730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CEY12_11730	SM00387	Histidine kinase-like ATPases
CEY12_11730	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_11735	SM00448	cheY-homologous receiver domain
CEY12_11735	SM00862	Transcriptional regulatory protein, C terminal
CEY12_11805	SM00448	cheY-homologous receiver domain
CEY12_11805	SM00850	LytTr DNA-binding domain
CEY12_11825	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_11835	SM00825	Beta-ketoacyl synthase
CEY12_11840	SM00358	Double-stranded RNA binding motif
CEY12_11840	SM00535	Ribonuclease III family
CEY12_11875	SM00382	ATPases associated with a variety of cellular activities
CEY12_11885	SM00849	Metallo-beta-lactamase superfamily
CEY12_11895	SM00060	Fibronectin type 3 domain
CEY12_11900	SM00060	Fibronectin type 3 domain
CEY12_11980	SM00788	Adenylosuccinate synthetase
CEY12_11995	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
CEY12_12020	SM01323	CEY12_12020
CEY12_12035	SM00382	ATPases associated with a variety of cellular activities
CEY12_12040	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
CEY12_12045	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CEY12_12060	SM00028	Tetratricopeptide repeats
CEY12_12190	SM00382	ATPases associated with a variety of cellular activities
CEY12_12200	SM00387	Histidine kinase-like ATPases
CEY12_12200	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_12230	SM00878	Biotin carboxylase C-terminal domain
CEY12_12460	SM00116	Domain in cystathionine beta-synthase and other proteins.
CEY12_12460	SM01240	CEY12_12460
CEY12_12515	SM00822	CEY12_12515
CEY12_12525	SM00148	Phospholipase C, catalytic domain (part); domain X
CEY12_12530	SM00098	Alkaline phosphatase homologues
CEY12_12675	SM00935	Outer membrane protein (OmpH-like)
CEY12_12680	SM00935	Outer membrane protein (OmpH-like)
CEY12_12725	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CEY12_12725	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CEY12_12725	SM00493	CEY12_12725
CEY12_12745	SM00563	Phosphate acyltransferases
CEY12_12780	SM00382	ATPases associated with a variety of cellular activities
CEY12_12810	SM00825	Beta-ketoacyl synthase
CEY12_12885	SM00825	Beta-ketoacyl synthase
CEY12_12955	SM00387	Histidine kinase-like ATPases
CEY12_12955	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_12960	SM00448	cheY-homologous receiver domain
CEY12_12960	SM00862	Transcriptional regulatory protein, C terminal
CEY12_12995	SM01060	CEY12_12995
CEY12_13020	SM01235	CEY12_13020
CEY12_13095	SM00876	Biotin and Thiamin Synthesis associated domain
CEY12_13140	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_13140	SM00419	helix_turn_helix, cAMP Regulatory protein
CEY12_13185	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_13195	SM00382	ATPases associated with a variety of cellular activities
CEY12_13260	SM00382	ATPases associated with a variety of cellular activities
CEY12_13260	SM00464	Found in ATP-dependent protease La (LON)
CEY12_13290	SM00710	Parallel beta-helix repeats
CEY12_13320	SM00382	ATPases associated with a variety of cellular activities
CEY12_13385	SM01260	CEY12_13385
CEY12_13445	SM00937	CEY12_13445
CEY12_13450	SM00642	Alpha-amylase domain
CEY12_13465	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_13505	SM00382	ATPases associated with a variety of cellular activities
CEY12_13530	SM01409	CEY12_13530
CEY12_13580	SM00382	ATPases associated with a variety of cellular activities
CEY12_13590	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_13610	SM00479	CEY12_13610
CEY12_13625	SM00450	Rhodanese Homology Domain
CEY12_13625	SM00849	Metallo-beta-lactamase superfamily
CEY12_13630	SM00450	Rhodanese Homology Domain
CEY12_13660	SM00245	tail specific protease
CEY12_13665	SM00382	ATPases associated with a variety of cellular activities
CEY12_13750	SM00487	DEAD-like helicases superfamily
CEY12_13750	SM00490	helicase superfamily c-terminal domain
CEY12_13850	SM00957	SecA DEAD-like domain
CEY12_13850	SM00958	SecA preprotein cross-linking domain
CEY12_13925	SM00448	cheY-homologous receiver domain
CEY12_13995	SM00740	CEY12_13995
CEY12_14045	SM00842	Cell division protein FtsA
CEY12_14050	SM00864	Tubulin/FtsZ family, GTPase domain
CEY12_14050	SM00865	Tubulin/FtsZ family, C-terminal domain
CEY12_14095	SM01340	CEY12_14095
CEY12_14110	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CEY12_14110	SM00387	Histidine kinase-like ATPases
CEY12_14110	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_14115	SM00448	cheY-homologous receiver domain
CEY12_14115	SM00862	Transcriptional regulatory protein, C terminal
CEY12_14120	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_14155	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_14165	SM00448	cheY-homologous receiver domain
CEY12_14165	SM00850	LytTr DNA-binding domain
CEY12_14180	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_14195	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_14275	SM00028	Tetratricopeptide repeats
CEY12_14280	SM00829	Enoylreductase
CEY12_14285	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_14300	SM00899	CEY12_14300
CEY12_14325	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CEY12_14355	SM00506	Appr-1"-p processing enzyme
CEY12_14375	SM00506	Appr-1"-p processing enzyme
CEY12_14390	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CEY12_14500	SM00316	Ribosomal protein S1-like RNA-binding domain
CEY12_14500	SM00357	Cold shock protein domain
CEY12_14500	SM00955	CEY12_14500
CEY12_14515	SM00645	Papain family cysteine protease
CEY12_14525	SM01228	CEY12_14525
CEY12_14540	SM01005	Alanine racemase, C-terminal domain
CEY12_14565	SM00822	CEY12_14565
CEY12_14570	SM01240	CEY12_14570
CEY12_14600	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CEY12_14600	SM00245	tail specific protease
CEY12_14610	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_14610	SM00871	Bacterial transcription activator, effector binding domain
CEY12_14650	SM00448	cheY-homologous receiver domain
CEY12_14650	SM00850	LytTr DNA-binding domain
CEY12_14690	SM00382	ATPases associated with a variety of cellular activities
CEY12_14690	SM01086	C-terminal, D2-small domain, of ClpB protein
CEY12_14775	SM00478	endonuclease III
CEY12_14875	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CEY12_14875	SM00534	ATPase domain of DNA mismatch repair MUTS family
CEY12_14900	SM01324	CEY12_14900
CEY12_14930	SM00448	cheY-homologous receiver domain
CEY12_14930	SM00850	LytTr DNA-binding domain
CEY12_14965	SM00450	Rhodanese Homology Domain
CEY12_14995	SM00829	Enoylreductase
CEY12_15020	SM00382	ATPases associated with a variety of cellular activities
CEY12_15080	SM00448	cheY-homologous receiver domain
CEY12_15080	SM00850	LytTr DNA-binding domain
CEY12_15145	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CEY12_15170	SM00382	ATPases associated with a variety of cellular activities
CEY12_15310	SM01400	CEY12_15310
CEY12_15405	SM00387	Histidine kinase-like ATPases
CEY12_15405	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_15410	SM00448	cheY-homologous receiver domain
CEY12_15410	SM00862	Transcriptional regulatory protein, C terminal
CEY12_15415	SM01230	CEY12_15415
CEY12_15565	SM00825	Beta-ketoacyl synthase
CEY12_15595	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_15625	SM01149	CEY12_15625
CEY12_15635	SM00060	Fibronectin type 3 domain
CEY12_15635	SM00560	LamG-like jellyroll fold domain
CEY12_15680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_15680	SM00866	CEY12_15680
CEY12_15700	SM00448	cheY-homologous receiver domain
CEY12_15700	SM00862	Transcriptional regulatory protein, C terminal
CEY12_15705	SM00387	Histidine kinase-like ATPases
CEY12_15705	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_15770	SM00382	ATPases associated with a variety of cellular activities
CEY12_15810	SM00382	ATPases associated with a variety of cellular activities
CEY12_15825	SM00357	Cold shock protein domain
CEY12_15825	SM00382	ATPases associated with a variety of cellular activities
CEY12_15895	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CEY12_15990	SM00487	DEAD-like helicases superfamily
CEY12_15990	SM00490	helicase superfamily c-terminal domain
CEY12_15990	SM00982	CEY12_15990
CEY12_15990	SM01058	CarD-like/TRCF domain
CEY12_16025	SM00947	Carbonic anhydrase
CEY12_16040	SM00947	Carbonic anhydrase
CEY12_16165	SM00382	ATPases associated with a variety of cellular activities
CEY12_16185	SM00984	UDP binding domain
CEY12_16230	SM00257	Lysin motif
CEY12_16235	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CEY12_16325	SM00746	metallochaperone-like domain
CEY12_16390	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_16390	SM00895	CEY12_16390
CEY12_16450	SM00646	CEY12_16450
CEY12_16470	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CEY12_16475	SM00450	Rhodanese Homology Domain
CEY12_16510	SM00850	LytTr DNA-binding domain
CEY12_16530	SM00448	cheY-homologous receiver domain
CEY12_16530	SM00862	Transcriptional regulatory protein, C terminal
CEY12_16535	SM00387	Histidine kinase-like ATPases
CEY12_16535	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_16595	SM00838	Elongation factor G C-terminus
CEY12_16595	SM00889	Elongation factor G, domain IV
CEY12_16600	SM01403	CEY12_16600
CEY12_16655	SM00420	helix_turn_helix, Deoxyribose operon repressor
CEY12_16655	SM01134	CEY12_16655
CEY12_16675	SM01382	CEY12_16675
CEY12_16675	SM01383	CEY12_16675
CEY12_16690	SM00322	K homology RNA-binding domain
CEY12_16710	SM01374	CEY12_16710
CEY12_16785	SM00363	S4 RNA-binding domain
CEY12_16785	SM01390	CEY12_16785
CEY12_16790	SM00662	RNA polymerases D
CEY12_16810	SM00421	helix_turn_helix, Lux Regulon
CEY12_16810	SM00448	cheY-homologous receiver domain
CEY12_16845	SM01192	CEY12_16845
CEY12_16845	SM01193	CEY12_16845
CEY12_16855	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_16945	SM00028	Tetratricopeptide repeats
CEY12_16950	SM00448	cheY-homologous receiver domain
CEY12_16950	SM00850	LytTr DNA-binding domain
CEY12_16960	SM00382	ATPases associated with a variety of cellular activities
CEY12_17065	SM01018	B12 binding domain
CEY12_17090	SM00840	CEY12_17090
CEY12_17100	SM01065	Starch binding domain
CEY12_17280	SM00448	cheY-homologous receiver domain
CEY12_17280	SM00862	Transcriptional regulatory protein, C terminal
CEY12_17285	SM00387	Histidine kinase-like ATPases
CEY12_17285	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_17310	SM00448	cheY-homologous receiver domain
CEY12_17310	SM00862	Transcriptional regulatory protein, C terminal
CEY12_17315	SM00387	Histidine kinase-like ATPases
CEY12_17315	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_17330	SM00014	Acid phosphatase homologues
CEY12_17345	SM00421	helix_turn_helix, Lux Regulon
CEY12_17345	SM00448	cheY-homologous receiver domain
CEY12_17350	SM00387	Histidine kinase-like ATPases
CEY12_17370	SM00382	ATPases associated with a variety of cellular activities
CEY12_17370	SM01086	C-terminal, D2-small domain, of ClpB protein
CEY12_17465	SM00860	SMI1 / KNR4 family
CEY12_17475	SM00487	DEAD-like helicases superfamily
CEY12_17555	SM00382	ATPases associated with a variety of cellular activities
CEY12_17555	SM00994	ClpX C4-type zinc finger
CEY12_17555	SM01086	C-terminal, D2-small domain, of ClpB protein
CEY12_17590	SM00382	ATPases associated with a variety of cellular activities
CEY12_17610	SM00563	Phosphate acyltransferases
CEY12_17630	SM00919	Malic enzyme, NAD binding domain
CEY12_17630	SM01274	CEY12_17630
CEY12_17715	SM00327	von Willebrand factor (vWF) type A domain
CEY12_17750	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
CEY12_17770	SM00465	GIY-YIG type nucleases (URI domain)
CEY12_17810	SM00867	YceI-like domain 
CEY12_17900	SM00829	Enoylreductase
CEY12_17925	SM00740	CEY12_17925
CEY12_17930	SM00363	S4 RNA-binding domain
CEY12_17940	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_17995	SM00855	Phosphoglycerate mutase family
CEY12_18000	SM00732	Likely ribonuclease with RNase H fold.
CEY12_18085	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CEY12_18095	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CEY12_18160	SM00060	Fibronectin type 3 domain
CEY12_18200	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_18265	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_18285	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_18400	SM00479	CEY12_18400
CEY12_18405	SM00479	CEY12_18405
CEY12_18420	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_18425	SM00244	prohibitin homologues
CEY12_18455	SM00838	Elongation factor G C-terminus
CEY12_18455	SM00889	Elongation factor G, domain IV
CEY12_18520	SM00849	Metallo-beta-lactamase superfamily
CEY12_18605	SM01130	CEY12_18605
CEY12_18615	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_18620	SM00448	cheY-homologous receiver domain
CEY12_18630	SM00487	DEAD-like helicases superfamily
CEY12_18630	SM00490	helicase superfamily c-terminal domain
CEY12_18700	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_18715	SM00363	S4 RNA-binding domain
CEY12_18825	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_18865	SM00870	CEY12_18865
CEY12_18895	SM00344	helix_turn_helix ASNC type
CEY12_18915	SM00861	Transketolase, pyrimidine binding domain
CEY12_18995	SM01290	CEY12_18995
CEY12_19015	SM00382	ATPases associated with a variety of cellular activities
CEY12_19020	SM00867	YceI-like domain 
CEY12_19065	SM00493	CEY12_19065
CEY12_19150	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_19165	SM00903	Flavin reductase like domain
CEY12_19220	SM00829	Enoylreductase
CEY12_19290	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_19340	SM00563	Phosphate acyltransferases
CEY12_19355	SM00316	Ribosomal protein S1-like RNA-binding domain
CEY12_19360	SM00411	bacterial (prokaryotic) histone like domain
CEY12_19365	SM00421	helix_turn_helix, Lux Regulon
CEY12_19380	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CEY12_19395	SM00382	ATPases associated with a variety of cellular activities
CEY12_19395	SM01086	C-terminal, D2-small domain, of ClpB protein
CEY12_19455	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CEY12_19455	SM00474	3'-5' exonuclease
CEY12_19455	SM00475	5'-3' exonuclease
CEY12_19455	SM00482	DNA polymerase A domain
CEY12_19545	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_19555	SM00091	PAS domain
CEY12_19555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CEY12_19555	SM00387	Histidine kinase-like ATPases
CEY12_19555	SM00388	His Kinase A (phosphoacceptor) domain
CEY12_19590	SM00382	ATPases associated with a variety of cellular activities
CEY12_19590	SM00448	cheY-homologous receiver domain
CEY12_19655	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CEY12_19655	SM00292	breast cancer carboxy-terminal domain
CEY12_19655	SM00532	Ligase N family
CEY12_19685	SM00822	CEY12_19685
CEY12_19750	SM00644	CEY12_19750
CEY12_19790	SM00382	ATPases associated with a variety of cellular activities
CEY12_19805	SM00487	DEAD-like helicases superfamily
CEY12_19805	SM00490	helicase superfamily c-terminal domain
CEY12_19845	SM00487	DEAD-like helicases superfamily
CEY12_19845	SM00490	helicase superfamily c-terminal domain
CEY12_19875	SM00382	ATPases associated with a variety of cellular activities
CEY12_19890	SM00788	Adenylosuccinate synthetase
CEY12_19920	SM00470	ParB-like nuclease domain
CEY12_20020	SM00850	LytTr DNA-binding domain
CEY12_20025	SM01235	CEY12_20025
CEY12_20045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CEY12_20060	SM00421	helix_turn_helix, Lux Regulon
CEY12_20060	SM00448	cheY-homologous receiver domain
CEY12_20065	SM00387	Histidine kinase-like ATPases
CEY12_20075	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_20115	SM00729	Elongator protein 3, MiaB family, Radical SAM
CEY12_20120	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_20140	SM00327	von Willebrand factor (vWF) type A domain
CEY12_20160	SM00028	Tetratricopeptide repeats
CEY12_20170	SM00448	cheY-homologous receiver domain
CEY12_20170	SM00850	LytTr DNA-binding domain
CEY12_20180	SM00852	Probable molybdopterin binding domain
CEY12_20185	SM00636	CEY12_20185
CEY12_20215	SM00478	endonuclease III
CEY12_20215	SM00525	CEY12_20215
CEY12_20255	SM00450	Rhodanese Homology Domain
CEY12_20310	SM00357	Cold shock protein domain
CEY12_20315	SM00357	Cold shock protein domain
CEY12_20320	SM00487	DEAD-like helicases superfamily
CEY12_20340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CEY12_20460	SM00478	endonuclease III
CEY12_20495	SM00487	DEAD-like helicases superfamily
CEY12_20495	SM00490	helicase superfamily c-terminal domain
CEY12_20535	SM00028	Tetratricopeptide repeats
CEY12_20585	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_20610	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CEY12_20610	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CEY12_20610	SM00493	CEY12_20610
CEY12_20650	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_20660	SM00850	LytTr DNA-binding domain
CEY12_20690	SM00497	Intron encoded nuclease repeat motif
CEY12_20795	SM00100	Cyclic nucleotide-monophosphate binding domain
CEY12_20795	SM00419	helix_turn_helix, cAMP Regulatory protein
CEY12_20830	SM00116	Domain in cystathionine beta-synthase and other proteins.
CEY12_20830	SM00924	MgtE intracellular N domain
CEY12_20840	SM01387	CEY12_20840
CEY12_20850	SM00316	Ribosomal protein S1-like RNA-binding domain
CEY12_20850	SM00322	K homology RNA-binding domain
CEY12_20860	SM00382	ATPases associated with a variety of cellular activities
CEY12_20865	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_20920	SM00867	YceI-like domain 
CEY12_20925	SM00867	YceI-like domain 
CEY12_20970	SM00448	cheY-homologous receiver domain
CEY12_20970	SM00850	LytTr DNA-binding domain
CEY12_20985	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CEY12_20985	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CEY12_21005	SM00400	zinc finger
CEY12_21005	SM00493	CEY12_21005
CEY12_21075	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CEY12_21110	SM00382	ATPases associated with a variety of cellular activities
CEY12_21125	SM00937	CEY12_21125
CEY12_21170	SM00271	DnaJ molecular chaperone homology domain
CEY12_21190	SM00946	Prolyl-tRNA synthetase, C-terminal
CEY12_21225	SM00981	CEY12_21225
CEY12_21235	SM00458	Ricin-type beta-trefoil
CEY12_21240	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_21260	SM00344	helix_turn_helix ASNC type
CEY12_21270	SM00861	Transketolase, pyrimidine binding domain
CEY12_21275	SM00479	CEY12_21275
CEY12_21275	SM00481	DNA polymerase alpha chain like domain
CEY12_21280	SM00060	Fibronectin type 3 domain
CEY12_21325	SM00835	Cupin
CEY12_21370	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CEY12_21380	SM00650	Ribosomal RNA adenine dimethylases
CEY12_21410	SM00363	S4 RNA-binding domain
CEY12_21425	SM00422	helix_turn_helix, mercury resistance
CEY12_21430	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_21450	SM00487	DEAD-like helicases superfamily
CEY12_21450	SM00490	helicase superfamily c-terminal domain
CEY12_21455	SM00316	Ribosomal protein S1-like RNA-binding domain
CEY12_21505	SM00421	helix_turn_helix, Lux Regulon
CEY12_21520	SM00882	Coenzyme A transferase
CEY12_21525	SM00382	ATPases associated with a variety of cellular activities
CEY12_21530	SM00882	Coenzyme A transferase
CEY12_21575	SM00487	DEAD-like helicases superfamily
CEY12_21575	SM00490	helicase superfamily c-terminal domain
CEY12_21635	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CEY12_21670	SM00530	Helix-turn-helix XRE-family like proteins 
CEY12_21690	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_21700	SM00318	Staphylococcal nuclease homologues
CEY12_21755	SM00382	ATPases associated with a variety of cellular activities
CEY12_21785	SM00347	helix_turn_helix multiple antibiotic resistance protein
CEY12_21915	SM00387	Histidine kinase-like ATPases
CEY12_21915	SM00433	TopoisomeraseII
CEY12_21940	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CEY12_22010	SM00322	K homology RNA-binding domain
CEY12_22010	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CEY12_22095	SM00342	helix_turn_helix, arabinose operon control protein
CEY12_22130	SM01234	CEY12_22130
CEY12_22135	SM00382	ATPases associated with a variety of cellular activities
