LOCUS       MH782427                2255 bp    DNA     linear   VRL 05-MAY-2019
DEFINITION  Circoviridae sp. isolate C0101, complete genome.
ACCESSION   MH782427
VERSION     MH782427.1
KEYWORDS    .
SOURCE      Circoviridae sp.
  ORGANISM  Circoviridae sp.
            Viruses; Circoviridae; unclassified Circoviridae.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ling,Y. and Zhang,W.
  TITLE     The genital tract virome of dairy cows
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Ling,Y. and Zhang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2018) School of Medicine, Jiangsu University, 301
            Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10
            Sequencing Technology :: Sanger dideoxy sequencing; Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Circoviridae sp."
                     /mol_type="genomic DNA"
                     /isolate="C0101"
                     /isolation_source="genital tract"
                     /host="dairy cow"
                     /db_xref="taxon:1954248"
                     /country="China"
                     /collection_date="2016"
     gene            1..873
                     /gene="CAP"
     CDS             1..873
                     /gene="CAP"
                     /codon_start=1
                     /product="Cap"
                     /protein_id="QCH00632.1"
                     /translation="MAIKRFKRFGARSSRKRARYSRRYYRRRNRKFKRYYRRGRRFPR
                     ATEVKSVSFYSKQIWQFDQDLANQDVTFYPGFVTMFPSPQIGIDITQGTNTNQRIGAK
                     VTPIKLRLSGSLSLDRVFAKPDIQPQSFHVRLIVYQVRGGNGSFNPNQSGYHPLAMAT
                     NTGLLDASQLQKLLSYYDGQGTTFQTSVMRSNMGTSKVPLRLGIGGQFRMLYTKTFVL
                     SNQFSSTKPFRIVTKVPRRFVWPETPDGLQDNAPQAKCRNSVYVVWICVPQTANPIGD
                     VHLNYNTQLFYIDK"
     gene            complement(1239..2150)
                     /gene="REP"
     CDS             complement(1239..2150)
                     /gene="REP"
                     /codon_start=1
                     /product="Rep"
                     /protein_id="QCH00633.1"
                     /translation="MYLNTAFFITLVMPFLVRGSKFLLTWPQAGALTREIILGHLKDI
                     GNIRYVVVARELHDDGGEHFHSVVIYKNRLQKRDNVFSIGEFVCNIAPIGRRDVDLKN
                     AVKYVKKEDTSYIEEGEKPECLFKLTKREKAYFALSHTNHECVDAGVFSFSELCRLEQ
                     VRNLFNMDWPQFKQREVHWYYGPTGAGKTREAWKVLLDKYELKDIWISSGKIDPFFNG
                     YTGQKAVILDDFRPGFCRFEFLLRLLDGYPVTINVKGGYCQWCAEIIIITAPTAPDDM
                     YINRETGQQWDNLDQLLRRINVTSFFN"
ORIGIN      
        1 atggctatca aacgttttaa aaggttcggc gctaggtcct ctcgcaaaag ggctcgttat
       61 tctcgccgtt attatcgccg tcgtaaccgt aaatttaagc ggtactatag gcgcggtcgt
      121 cgctttcctc gtgctaccga ggttaaatct gtgagcttct atagtaaaca aatatggcaa
      181 tttgatcagg atttggctaa tcaggatgtt actttttacc caggttttgt tactatgttt
      241 ccttctccac aaataggcat agatattaca caaggtacta ataccaatca gcgtattggt
      301 gctaaagtaa ctcccattaa gctacgtttg tcaggatctt tatctttgga tcgtgtattt
      361 gcaaagcctg atattcaacc tcaatctttc catgtaagat taattgtgta ccaagtacgt
      421 ggaggtaatg gatcatttaa tcctaaccaa tctggatatc acccccttgc aatggctact
      481 aataccggat tgttggatgc tagtcaatta caaaaattac tgtcctatta tgatggtcaa
      541 ggaactacat ttcaaacttc agttatgcga agtaatatgg gtacaagtaa agtacctctt
      601 agattaggta taggtggaca atttagaatg ctttatacta aaacctttgt acttagtaac
      661 caattttcca gtacaaagcc atttcgtatt gtaactaaag tcccccgtag atttgtatgg
      721 ccagaaactc ctgatggact tcaagataat gctccacaag ccaagtgtag aaatagtgta
      781 tacgttgttt ggatttgtgt accccagact gcaaatccca taggtgatgt acatctaaat
      841 tataatactc aactttttta tatagacaaa taaatatgcg tttggagaaa cgtgagagcg
      901 aagcgtatgc gaagcgtgat gatcggaatt ccctctagta ttagaaggga atgaagcatc
      961 attcactttc ataagctata tatgtgttat gattttcatt tctcctgtgg tctagtgttg
     1021 tcgctgcagt aacgtggctc gatgtaaata cgctaatcac agagtaagct ggttcgataa
     1081 cctaggtcac ctttttttat tttgtgtaga tgaaggtagc ggttgagcga ctggtcggaa
     1141 caattgggcc tcgcccatgg agagaagtgt aaacacaatt tttcgcaatg cgttaacagt
     1201 accttttcgc aatacgttcc ccaaattatg agaatttatt aattaaaaaa agaagtgacg
     1261 tttatacgtc taagtaactg gtctaagtta tcccattgtt gaccagtttc cctgttgatg
     1321 tacatatcat ctggtgctgt aggtgctgta atgattatta tttctgcaca ccattggcaa
     1381 taaccaccct tcacattaat ggtaacagga taaccatcta gcagacgtaa taaaaattcg
     1441 aatctacaga aaccaggtct aaagtcatct aaaataactg ctttttgtcc tgtataacca
     1501 ttaaaaaaag ggtctatttt gccactgctg atccatatgt cctttaattc gtatttatcc
     1561 agtagcacct tccacgcttc cctagtcttc cctgcaccag ttggcccata gtaccaatgt
     1621 acttcccttt gtttgaattg tggccaatcc atattaaata aattacgcac ttgttccagc
     1681 ctacatagct ctgaaaaact gaatactccc gcatccacgc attcatggtt ggtatgactt
     1741 aatgcaaagt atgctttttc tcgcttagtt aatttgaaaa gacattctgg cttttctccc
     1801 tcctcgatgt atgatgtatc ctccttctta acgtatttaa ctgcattctt taggtctaca
     1861 tcgcgtcttc caataggcgc tatgttgcaa acaaactcac caatactaaa cacattatct
     1921 cttttttgaa gtctattttt atatatcacc actgaatgaa aatgctctcc accatcatca
     1981 tgaagctctc gtgctactac tacataacgt atatttccta tgtcctttaa gtgcccaagt
     2041 attatttccc tagtaagggc gccagcttgt ggccatgtta atagaaactt cgaacctcgt
     2101 accaaaaacg gcatgactaa tgttataaaa aatgccgtat tgaggtacat ttgttcgtgt
     2161 gaagtaggta tggccactta ccatgtgttt ttaaaataaa aacaatttaa atttcaaatt
     2221 gcttcagtca ttattaaaaa tttggaattt tttaa
//