LOCUS       MH617583                1646 bp    DNA     circular ENV 05-AUG-2018
DEFINITION  Circoviridae sp. isolate ctcc340, complete genome.
ACCESSION   MH617583
VERSION     MH617583.1
DBLINK      BioProject: PRJNA393166
            BioSample: SAMN07319269
            Sequence Read Archive: SRR5832142
KEYWORDS    ENV.
SOURCE      Circoviridae sp. (animal metagenome)
  ORGANISM  Circoviridae sp.
            Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A.
  TITLE     Uncovering a Universe of Circular DNA Viruses in Animal Metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2018) Lab of Cellular Oncology, National Cancer
            Institute, 37 Convent Dr., Room 4118, Bethesda, MD 20814, United
            States of America
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.11.0
            Genome Coverage       :: 21.3536x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Circoviridae sp."
                     /mol_type="genomic DNA"
                     /isolate="ctcc340"
                     /isolation_source="haddock tissue"
                     /db_xref="taxon:1954248"
                     /environmental_sample
                     /country="USA"
                     /collection_date="01-Jun-2017"
                     /note="genome binned from sequencing reads available in
                     SRX3009445;
                     metagenomic; derived from metagenome: animal metagenome"
     CDS             1..687
                     /inference="similar to AA sequence:INSD:AKV62298.1"
                     /codon_start=1
                     /product="putative capsid protein"
                     /protein_id="AXH77361.1"
                     /translation="MPIRRKPSKSSRKPRSVLSRPEKKAVRKIAKDTTLRLAETINKV
                     TVVENTQLFHNKPLYVTALLACEQGTSDDNTQSSKKVRKGDKLALKNMNIHFWLSNKD
                     DRPNVMYKGVLFWYKSDTAVGDTVVYFTQTNKILDRYNTEQIRVVDQFIVKSTNNYAV
                     DANNHEKSYLATLNKSYKAKSIVYDENGTTPKGWDLGFALVAYDAFGTLQTDNIASCA
                     FNVKMSFKDL"
     CDS             725..1318
                     /inference="protein motif:CDD:279178"
                     /note="Geminivirus Rep catalytic domain"
                     /codon_start=1
                     /product="Rep catalytic domain protein"
                     /protein_id="AXH77362.1"
                     /translation="MSHSNTNRHPIQKFFVTFPKSGAVTKHAFLKCCQELRLTYYIVC
                     KETHEDGQPHLHALLWFHTKKTKARLLKFFKEKYPNDNKRIHVQSVRNISATVEYCKK
                     EDAQYLETPGGPPKRKYKYPIWMVSACKQHFKSHPAVLAQQFRDETRKLENRKKEIDQ
                     ILPKLLMDFPNSASQCHILEKERNSIVHSLCLRAGGM"
ORIGIN      
        1 atgccaattc gtcgaaaacc atccaaatct tctagaaaac cccgatctgt cttatcgcgt
       61 cctgaaaaga aagccgtgag aaagatcgca aaagacacga cccttcgtct cgctgaaacg
      121 atcaataaag tcaccgtagt tgaaaacacc caactgtttc acaataagcc attatatgta
      181 actgcactcc tggcatgtga acagggtacc tctgatgata acactcaatc gtctaaaaag
      241 gtacgtaaag gtgacaagct agcattaaaa aatatgaaca tccatttctg gttgtcaaat
      301 aaggacgatc gtccgaacgt catgtataag ggtgtactgt tctggtataa gtcggacact
      361 gccgtgggag acacagtagt ttacttcacc caaaccaata aaatccttga tcggtataat
      421 acggaacaaa ttcgcgtagt tgaccagttt atagtcaaat ctacaaacaa ctatgccgtc
      481 gatgccaata atcacgaaaa gtcttacctt gctacgctca ataagtctta caaggctaag
      541 tcaatagtat atgatgagaa tggcacaaca cctaaaggtt gggacctcgg tttcgccctc
      601 gtcgcttacg acgcctttgg aacactccaa actgataata ttgccagttg cgcattcaat
      661 gtgaaaatgt cattcaagga cttgtaaaaa aaatattatt taagaaaatg ttacattaaa
      721 taaaatgtca cattctaaca caaatcgtca tccgatccaa aaattctttg taacctttcc
      781 taaatccggg gctgtaacta aacatgcatt cctaaaatgc tgccaggagc taaggctaac
      841 ttattacata gtttgcaagg agacccatga agatggtcaa ccacaccttc acgcgcttct
      901 atggtttcat acgaagaaga caaaggcgcg actcctaaag ttttttaaag agaaatatcc
      961 taatgataat aaaagaatcc atgttcagtc agtcagaaac atatcagcca cagtcgagta
     1021 ctgcaagaag gaggacgcac agtatctcga gacccccgga ggaccaccaa aacgtaagta
     1081 taaatatcca atctggatgg tgtctgcgtg caagcagcat tttaaaagcc atcctgcggt
     1141 attggcacag caatttcgtg atgagacgag aaaactagaa aatcgtaaaa aagagataga
     1201 tcaaatttta ccaaaattgt tgatggattt tcctaactcg gcaagtcaat gtcacatttt
     1261 ggagaaagag cgtaacagta tagtgcattc actctgtttg cgtgccgggg gtatgtgagt
     1321 tcattaccat acccccccaa aatcacaaag tcacaaaaat atgtagccca acagaaaagg
     1381 ccgtttgcct gtaaattctg caagtgaggt gttctacgga gccagctcac ctgtttgacc
     1441 atttctataa tccgaaatgg gccaattggg gtcccgaggc ccccgcaggg ccttggggta
     1501 gggcatttcg gtttatagaa tatgggagca agagctggct ctgtagaaac cgaccatacg
     1561 cagaatctct gcaagtagga agccaacgga aatgtctcaa actgaataaa aaataataat
     1621 ttaaaaattt atcttatcta atataa
//