locus-tag class description CLM_0001 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CLM_0001 IPR013317 Chromosomal replication initiator protein DnaA CLM_0001 IPR024633 DnaA N-terminal domain CLM_0001 IPR020591 Chromosomal replication control, initiator DnaA-like CLM_0001 IPR001957 Chromosomal replication control, initiator DnaA CLM_0001 IPR013159 Chromosomal replication initiator, DnaA C-terminal CLM_0001 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0001 IPR010921 Trp repressor/replication initiator CLM_0001 IPR003593 AAA+ ATPase domain CLM_0001 IPR038454 DnaA, N-terminal domain superfamily CLM_0002 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal CLM_0002 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal CLM_0002 IPR001001 DNA polymerase III, beta sliding clamp CLM_0002 IPR022637 DNA polymerase III, beta sliding clamp, central CLM_0004 IPR001238 DNA-binding, RecF CLM_0004 IPR042174 DNA-binding RecF, domain 2 CLM_0004 IPR018078 DNA-binding, RecF, conserved site CLM_0004 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0004 IPR003395 RecF/RecN/SMC, N-terminal CLM_0006 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_0006 IPR001241 DNA topoisomerase, type IIA CLM_0006 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CLM_0006 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CLM_0006 IPR018522 DNA topoisomerase, type IIA, conserved site CLM_0006 IPR006171 TOPRIM domain CLM_0006 IPR034160 DNA gyrase subunit B, TOPRIM domain CLM_0006 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_0006 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0006 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0006 IPR011557 DNA gyrase, subunit B CLM_0006 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLM_0006 IPR002288 DNA gyrase B subunit, C-terminal CLM_0007 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CLM_0007 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CLM_0007 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CLM_0007 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_0007 IPR005743 DNA gyrase, subunit A CLM_0007 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CLM_0007 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLM_0016 IPR013196 Helix-turn-helix, type 11 CLM_0016 IPR004173 3H domain CLM_0016 IPR035922 3H domain superfamily CLM_0016 IPR036390 Winged helix DNA-binding domain superfamily CLM_0016 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0016 IPR026043 Transcription repressor NadR CLM_0017 IPR007160 Domain of unknown function DUF362 CLM_0018 IPR005372 Uncharacterised protein family UPF0182 CLM_0020 IPR006076 FAD dependent oxidoreductase CLM_0020 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0022 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLM_0022 IPR002317 Serine-tRNA ligase, type1 CLM_0022 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily CLM_0022 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_0022 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_0022 IPR033729 Serine-tRNA ligase catalytic core domain CLM_0022 IPR015866 Serine-tRNA synthetase, type1, N-terminal CLM_0028 IPR003817 Phosphatidylserine decarboxylase-related CLM_0028 IPR033177 Phosphatidylserine decarboxylase CLM_0028 IPR033179 Phosphatidylserine decarboxylase, prokaryotic type 2 CLM_0029 IPR004147 UbiB domain CLM_0029 IPR011009 Protein kinase-like domain superfamily CLM_0032 IPR009057 Homeobox-like domain superfamily CLM_0032 IPR025944 Sigma-54 interaction domain, conserved site CLM_0032 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_0032 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_0032 IPR029016 GAF-like domain superfamily CLM_0032 IPR035965 PAS domain superfamily CLM_0032 IPR000014 PAS domain CLM_0032 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_0032 IPR002197 DNA binding HTH domain, Fis-type CLM_0032 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0032 IPR003593 AAA+ ATPase domain CLM_0033 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0033 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLM_0033 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0033 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0033 IPR006237 L-methionine gamma-lyase CLM_0034 IPR016192 APOBEC/CMP deaminase, zinc-binding CLM_0034 IPR016193 Cytidine deaminase-like CLM_0034 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_0034 IPR028883 tRNA-specific adenosine deaminase CLM_0037 IPR003593 AAA+ ATPase domain CLM_0037 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0037 IPR012763 DNA polymerase III, subunit gamma/ tau CLM_0037 IPR022754 DNA polymerase III, gamma subunit, domain III CLM_0037 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CLM_0037 IPR001270 ClpA/B family CLM_0038 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CLM_0038 IPR004401 Nucleoid-associated protein YbaB/EbfC family CLM_0039 IPR006171 TOPRIM domain CLM_0039 IPR015967 Recombination protein RecR, conserved site CLM_0039 IPR023628 Recombination protein RecR, C4-type zinc finger CLM_0039 IPR023627 Recombination protein RecR CLM_0039 IPR034137 RecR, TOPRIM domain CLM_0039 IPR000093 DNA recombination protein RecR CLM_0042 IPR040452 Sugar fermentation stimulation protein, C-terminal CLM_0042 IPR005224 Sugar fermentation stimulation protein CLM_0042 IPR041465 SfsA, N-terminal OB domain CLM_0043 IPR015376 Zinc ribbon, NADH pyrophosphatase CLM_0043 IPR020084 NUDIX hydrolase, conserved site CLM_0043 IPR015797 NUDIX hydrolase-like domain superfamily CLM_0043 IPR022925 NADH pyrophosphatase NudC CLM_0043 IPR000086 NUDIX hydrolase domain CLM_0047 IPR035985 Ubiquitin-activating enzyme CLM_0047 IPR000594 THIF-type NAD/FAD binding fold CLM_0049 IPR000182 GNAT domain CLM_0049 IPR016181 Acyl-CoA N-acyltransferase CLM_0074 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes CLM_0074 IPR006998 DltD CLM_0083 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site CLM_0083 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CLM_0083 IPR023059 Foldase protein PrsA CLM_0083 IPR027304 Trigger factor/SurA domain superfamily CLM_0089 IPR003000 Sirtuin family CLM_0089 IPR026591 Sirtuin, catalytic core small domain superfamily CLM_0089 IPR028628 Sirtuin, class U CLM_0089 IPR026590 Sirtuin family, catalytic core domain CLM_0089 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_0091 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLM_0091 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CLM_0091 IPR040449 LD-carboxypeptidase, N-terminal CLM_0091 IPR029062 Class I glutamine amidotransferase-like CLM_0091 IPR003507 Peptidase family S66 CLM_0091 IPR040921 LD-carboxypeptidase, C-terminal CLM_0096 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0096 IPR000310 Orn/Lys/Arg decarboxylase, major domain CLM_0096 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CLM_0096 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily CLM_0096 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0097 IPR018094 Thymidylate kinase CLM_0097 IPR039430 Thymidylate kinase-like domain CLM_0097 IPR018095 Thymidylate kinase, conserved site CLM_0097 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0098 IPR010375 Cyclic-di-AMP receptor CLM_0098 IPR011322 Nitrogen regulatory PII-like, alpha/beta CLM_0098 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_0099 IPR003593 AAA+ ATPase domain CLM_0099 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0099 IPR012763 DNA polymerase III, subunit gamma/ tau CLM_0099 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CLM_0100 IPR007557 PSP1, C-terminal CLM_0102 IPR000813 7Fe ferredoxin CLM_0102 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0102 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0103 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0103 IPR007848 Methyltransferase small domain CLM_0104 IPR008189 rRNA small subunit methyltransferase I CLM_0104 IPR035996 Tetrapyrrole methylase superfamily CLM_0104 IPR014777 Tetrapyrrole methylase, subdomain 1 CLM_0104 IPR014776 Tetrapyrrole methylase, subdomain 2 CLM_0104 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CLM_0104 IPR000878 Tetrapyrrole methylase CLM_0105 IPR038765 Papain-like cysteine peptidase superfamily CLM_0105 IPR000064 Endopeptidase, NLPC/P60 domain CLM_0109 IPR003876 Arginine deiminase CLM_0110 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site CLM_0110 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily CLM_0110 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CLM_0112 IPR002509 NodB homology domain CLM_0112 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_0114 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_0115 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_0116 IPR002528 Multi antimicrobial extrusion protein CLM_0117 IPR036895 Uracil-DNA glycosylase-like domain superfamily CLM_0117 IPR005273 Uracil-DNA glycosylase family 4 CLM_0117 IPR005122 Uracil-DNA glycosylase-like CLM_0119 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLM_0119 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_0119 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0119 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain CLM_0119 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal CLM_0119 IPR023457 Methionine-tRNA synthetase, type 2 CLM_0119 IPR002547 tRNA-binding domain CLM_0119 IPR015413 Methionyl/Leucyl tRNA synthetase CLM_0119 IPR014758 Methionyl-tRNA synthetase CLM_0119 IPR033911 Methioninyl-tRNA synthetase core domain CLM_0119 IPR012340 Nucleic acid-binding, OB-fold CLM_0120 IPR016991 Protein of unknown function UCP032178 CLM_0120 IPR007383 Protein of unknown function DUF445 CLM_0121 IPR018228 Deoxyribonuclease, TatD-related, conserved site CLM_0121 IPR015991 Uncharacterised hydrolase TatD-type CLM_0121 IPR032466 Metal-dependent hydrolase CLM_0121 IPR001130 TatD family CLM_0122 IPR011098 G5 domain CLM_0122 IPR010611 3D domain CLM_0122 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 CLM_0122 IPR036908 RlpA-like domain superfamily CLM_0123 IPR004466 Ribonuclease M5 CLM_0123 IPR034141 Ribonuclease M5-like, TOPRIM domain CLM_0123 IPR006171 TOPRIM domain CLM_0123 IPR025156 Ribonuclease M5, C-terminal domain CLM_0124 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site CLM_0124 IPR023165 rRNA adenine dimethylase-like CLM_0124 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CLM_0124 IPR011530 Ribosomal RNA adenine dimethylase CLM_0124 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0124 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CLM_0129 IPR003593 AAA+ ATPase domain CLM_0129 IPR003439 ABC transporter-like CLM_0129 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0129 IPR017871 ABC transporter, conserved site CLM_0130 IPR025857 MacB-like periplasmic core domain CLM_0130 IPR003838 ABC transporter permease protein domain CLM_0130 IPR005085 Carbohydrate binding module family 25 CLM_0131 IPR019591 Mrp/NBP35 ATP-binding protein CLM_0131 IPR000808 Mrp, conserved site CLM_0131 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0131 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLM_0132 IPR001080 3Fe-4S ferredoxin CLM_0132 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0132 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0135 IPR029787 Nucleotide cyclase CLM_0135 IPR012292 Globin/Protoglobin CLM_0135 IPR009050 Globin-like superfamily CLM_0135 IPR000160 GGDEF domain CLM_0135 IPR039435 Diguanylate cyclase DosC, globin sensor domain CLM_0136 IPR003416 MgtC/SapB/SrpB/YhiD family CLM_0137 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic CLM_0137 IPR001150 Glycine radical domain CLM_0137 IPR005144 ATP-cone domain CLM_0137 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CLM_0138 IPR013785 Aldolase-type TIM barrel CLM_0138 IPR034457 Organic radical-activating enzymes CLM_0138 IPR012838 Pyruvate formate-lyase 1 activating enzyme CLM_0138 IPR034465 Pyruvate formate-lyase activase CLM_0138 IPR001989 Radical-activating enzyme, conserved site CLM_0138 IPR007197 Radical SAM CLM_0140 IPR005149 Transcription regulator PadR, N-terminal CLM_0140 IPR036390 Winged helix DNA-binding domain superfamily CLM_0140 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0141 IPR001279 Metallo-beta-lactamase CLM_0141 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0141 IPR022877 Protein of unknown funcion UPF0173 CLM_0142 IPR023586 Isoleucine-tRNA ligase, type 2 CLM_0142 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_0142 IPR033709 Isoleucyl tRNA synthetase type 2, anticodon-binding domain CLM_0142 IPR002300 Aminoacyl-tRNA synthetase, class Ia CLM_0142 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLM_0142 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CLM_0142 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0142 IPR002301 Isoleucine-tRNA ligase CLM_0142 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLM_0143 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0143 IPR000843 LacI-type HTH domain CLM_0143 IPR028082 Periplasmic binding protein-like I CLM_0144 IPR041677 DNA2/NAM7 helicase, AAA domain CLM_0144 IPR041679 DNA2/NAM7 helicase-like, AAA domain CLM_0144 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0144 IPR025103 Protein of unknown function DUF4011 CLM_0145 IPR005835 Nucleotidyl transferase domain CLM_0145 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0145 IPR014710 RmlC-like jelly roll fold CLM_0145 IPR011051 RmlC-like cupin domain superfamily CLM_0145 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal CLM_0145 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase CLM_0146 IPR002822 Nickel insertion protein CLM_0147 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE CLM_0147 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0147 IPR022310 NAD/GMP synthase CLM_0148 IPR035893 PurE domain superfamily CLM_0148 IPR000031 PurE domain CLM_0148 IPR039476 Pyridinium-3,5-biscarboxylic acid mononucleotide synthase CLM_0150 IPR006059 Bacterial extracellular solute-binding protein CLM_0151 IPR001296 Glycosyl transferase, family 1 CLM_0151 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLM_0152 IPR011009 Protein kinase-like domain superfamily CLM_0152 IPR022826 3-deoxy-D-manno-octulosonic acid kinase CLM_0156 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLM_0156 IPR001296 Glycosyl transferase, family 1 CLM_0158 IPR008764 Peptidase U57, YabG CLM_0159 IPR009366 Protein Veg CLM_0160 IPR036779 LysM domain superfamily CLM_0160 IPR018392 LysM domain CLM_0160 IPR014248 Spore coat assembly protein SafA CLM_0162 IPR029062 Class I glutamine amidotransferase-like CLM_0162 IPR005320 Peptidase S51 CLM_0162 IPR011811 Peptidase S51, cyanophycinase CLM_0163 IPR036565 Mur-like, catalytic domain superfamily CLM_0163 IPR036615 Mur ligase, C-terminal domain superfamily CLM_0163 IPR011761 ATP-grasp fold CLM_0163 IPR013651 ATP-grasp fold, RimK-type CLM_0163 IPR011810 Cyanophycin synthetase CLM_0163 IPR013221 Mur ligase, central CLM_0163 IPR004101 Mur ligase, C-terminal CLM_0164 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_0164 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase CLM_0164 IPR006204 GHMP kinase N-terminal domain CLM_0164 IPR036554 GHMP kinase, C-terminal domain superfamily CLM_0164 IPR013750 GHMP kinase, C-terminal domain CLM_0164 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_0166 IPR004995 Bacillus/Clostridium Ger spore germination protein CLM_0167 IPR004761 Spore germination GerAB CLM_0169 IPR014202 Sporulation stage II, protein R CLM_0170 IPR007235 Glycosyl transferase, family 28, C-terminal CLM_0170 IPR009695 Diacylglycerol glucosyltransferase, N-terminal CLM_0170 IPR023589 Processive diacylglycerol beta-glucosyltransferase CLM_0171 IPR025711 PepSY domain CLM_0171 IPR014239 Spore germination YpeB CLM_0172 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0172 IPR023382 Adenine nucleotide alpha hydrolase-like domains CLM_0172 IPR004506 tRNA-specific 2-thiouridylase CLM_0175 IPR029062 Class I glutamine amidotransferase-like CLM_0175 IPR033828 CTP synthase GATase domain CLM_0175 IPR017926 Glutamine amidotransferase CLM_0175 IPR017456 CTP synthase, N-terminal CLM_0175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0175 IPR004468 CTP synthase CLM_0177 IPR041703 Transcription termination factor Rho, ATP binding domain CLM_0177 IPR036269 Rho termination factor, N-terminal domain superfamily CLM_0177 IPR003593 AAA+ ATPase domain CLM_0177 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLM_0177 IPR004665 Transcription termination factor Rho CLM_0177 IPR011112 Rho termination factor, N-terminal CLM_0177 IPR011113 Rho termination factor, RNA-binding domain CLM_0177 IPR011129 Cold shock domain CLM_0177 IPR012340 Nucleic acid-binding, OB-fold CLM_0177 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0178 IPR027491 Ribosomal protein L31 type A CLM_0178 IPR002150 Ribosomal protein L31 CLM_0178 IPR034704 L28p-like CLM_0178 IPR042105 Ribosomal protein L31 superfamily CLM_0179 IPR020633 Thymidine kinase, conserved site CLM_0179 IPR001267 Thymidine kinase CLM_0179 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0180 IPR010787 Protein of unknown function DUF1385 CLM_0181 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0181 IPR040758 Release factor glutamine methyltransferase, N-terminal domain CLM_0181 IPR004556 Methyltransferase HemK-like CLM_0181 IPR007848 Methyltransferase small domain CLM_0181 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLM_0181 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific CLM_0182 IPR004373 Peptide chain release factor 1 CLM_0182 IPR000352 Peptide chain release factor class I CLM_0182 IPR005139 Peptide chain release factor CLM_0185 IPR006070 YrdC-like domain CLM_0185 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CLM_0185 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily CLM_0185 IPR005145 Putative GTP-binding controlling metal-binding domain CLM_0185 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLM_0186 IPR017867 Protein-tyrosine phosphatase, low molecular weight CLM_0186 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLM_0186 IPR023485 Phosphotyrosine protein phosphatase I CLM_0187 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily CLM_0187 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family CLM_0187 IPR004785 Ribose 5-phosphate isomerase B CLM_0188 IPR034332 Uracil phosphoribosyltransferase, bacterial-type CLM_0188 IPR000836 Phosphoribosyltransferase domain CLM_0188 IPR029057 Phosphoribosyltransferase-like CLM_0188 IPR005765 Uracil phosphoribosyl transferase CLM_0191 IPR000715 Glycosyl transferase, family 4 CLM_0191 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CLM_0192 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like CLM_0192 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain CLM_0194 IPR000568 ATP synthase, F0 complex, subunit A CLM_0194 IPR035908 ATP synthase, F0 complex, subunit A superfamily CLM_0195 IPR002379 V-ATPase proteolipid subunit C-like domain CLM_0195 IPR038662 F1F0 ATP synthase subunit C superfamily CLM_0195 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast CLM_0195 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site CLM_0195 IPR035921 F/V-ATP synthase subunit C superfamily CLM_0195 IPR000454 ATP synthase, F0 complex, subunit C CLM_0196 IPR005864 ATP synthase, F0 complex, subunit b, bacterial CLM_0196 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast CLM_0196 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CLM_0197 IPR020781 ATPase, OSCP/delta subunit, conserved site CLM_0197 IPR000711 ATPase, OSCP/delta subunit CLM_0197 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily CLM_0198 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0198 IPR000793 ATP synthase, alpha subunit, C-terminal CLM_0198 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily CLM_0198 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain CLM_0198 IPR005294 ATP synthase, F1 complex, alpha subunit CLM_0198 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLM_0198 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLM_0198 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CLM_0198 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLM_0198 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CLM_0199 IPR000131 ATP synthase, F1 complex, gamma subunit CLM_0199 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site CLM_0199 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily CLM_0200 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0200 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal CLM_0200 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLM_0200 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CLM_0200 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLM_0200 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLM_0200 IPR005722 ATP synthase, F1 complex, beta subunit CLM_0200 IPR003593 AAA+ ATPase domain CLM_0201 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal CLM_0201 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CLM_0201 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit CLM_0201 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily CLM_0201 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal CLM_0203 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CLM_0203 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CLM_0203 IPR001986 Enolpyruvate transferase domain CLM_0203 IPR036968 Enolpyruvate transferase domain superfamily CLM_0204 IPR013486 Sporulation stage II protein D, amidase enhancer LytB CLM_0204 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal CLM_0204 IPR014225 Sporulation stage II, protein D firmicutes CLM_0206 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLM_0206 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID CLM_0207 IPR004753 Cell shape determining protein MreB CLM_0208 IPR023430 Peptidase HybD-like domain superfamily CLM_0208 IPR009665 Protein of unknown function DUF1256 CLM_0209 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase CLM_0209 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CLM_0209 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0209 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type CLM_0216 IPR022636 S-adenosylmethionine synthetase superfamily CLM_0216 IPR022631 S-adenosylmethionine synthetase, conserved site CLM_0216 IPR022630 S-adenosylmethionine synthetase, C-terminal CLM_0216 IPR022629 S-adenosylmethionine synthetase, central domain CLM_0216 IPR022628 S-adenosylmethionine synthetase, N-terminal CLM_0216 IPR002133 S-adenosylmethionine synthetase CLM_0217 IPR003593 AAA+ ATPase domain CLM_0217 IPR027785 UvrD-like helicase C-terminal domain CLM_0217 IPR029493 RecD helicase-like helix-hairpin-helix domain CLM_0217 IPR041451 RecD-like DNA helicase, SH3 domain CLM_0217 IPR006345 RecD-like DNA helicase CLM_0217 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0220 IPR036567 Ribosome hibernation promotion factor-like CLM_0220 IPR034694 Ribosome hibernation promoting factor, long/plastid CLM_0220 IPR003489 Ribosome hibernation promoting factor/RaiA CLM_0220 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal CLM_0220 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily CLM_0221 IPR020937 SecA conserved site CLM_0221 IPR014018 SecA motor DEAD CLM_0221 IPR011130 SecA, preprotein cross-linking domain CLM_0221 IPR011116 SecA Wing/Scaffold CLM_0221 IPR036266 SecA, Wing/Scaffold superfamily CLM_0221 IPR036670 SecA, preprotein cross-linking domain superfamily CLM_0221 IPR000185 Protein translocase subunit SecA CLM_0221 IPR004027 SEC-C motif CLM_0221 IPR011115 SecA DEAD-like, N-terminal CLM_0221 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0222 IPR005139 Peptide chain release factor CLM_0222 IPR004374 Peptide chain release factor 2 CLM_0222 IPR000352 Peptide chain release factor class I CLM_0224 IPR006641 YqgF/RNase H-like domain CLM_0224 IPR041692 HHH domain 9 CLM_0224 IPR012340 Nucleic acid-binding, OB-fold CLM_0224 IPR010994 RuvA domain 2-like CLM_0224 IPR022967 RNA-binding domain, S1 CLM_0224 IPR003029 S1 domain CLM_0224 IPR023323 Tex-like domain superfamily CLM_0224 IPR037027 YqgF/RNase H-like domain superfamily CLM_0224 IPR023319 Tex-like protein, HTH domain superfamily CLM_0224 IPR018974 Tex-like protein, N-terminal CLM_0224 IPR032639 Tex protein, YqgF-like domain CLM_0224 IPR012337 Ribonuclease H-like superfamily CLM_0226 IPR025720 ECF transporter, Riboflavin transporter RibU CLM_0226 IPR024529 ECF transporter, substrate-specific component CLM_0230 IPR036390 Winged helix DNA-binding domain superfamily CLM_0230 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0230 IPR001845 HTH ArsR-type DNA-binding domain CLM_0230 IPR011991 ArsR-like helix-turn-helix domain CLM_0231 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_0231 IPR023536 Coenzyme A disulphide reductase, staphyolococci CLM_0231 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0231 IPR023753 FAD/NAD(P)-binding domain CLM_0231 IPR017758 Coenzyme A disulphide reductase CLM_0231 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLM_0233 IPR007685 RelA/SpoT CLM_0234 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0234 IPR002300 Aminoacyl-tRNA synthetase, class Ia CLM_0234 IPR002302 Leucine-tRNA ligase CLM_0234 IPR025709 Leucyl-tRNA synthetase, editing domain CLM_0234 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLM_0234 IPR015413 Methionyl/Leucyl tRNA synthetase CLM_0234 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLM_0234 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CLM_0235 IPR036873 Rhodanese-like domain superfamily CLM_0235 IPR023695 Thiosulfate sulfurtransferase, bacterial CLM_0235 IPR001763 Rhodanese-like domain CLM_0238 IPR012724 Chaperone DnaJ CLM_0238 IPR002939 Chaperone DnaJ, C-terminal CLM_0238 IPR036869 Chaperone J-domain superfamily CLM_0238 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CLM_0238 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CLM_0238 IPR001623 DnaJ domain CLM_0238 IPR018253 DnaJ domain, conserved site CLM_0238 IPR008971 HSP40/DnaJ peptide-binding CLM_0242 IPR013785 Aldolase-type TIM barrel CLM_0242 IPR000771 Fructose-bisphosphate aldolase, class-II CLM_0242 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 CLM_0244 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0244 IPR007353 Protein of unknown function DUF421 CLM_0245 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_0245 IPR004154 Anticodon-binding CLM_0245 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_0245 IPR012676 TGS-like CLM_0245 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CLM_0245 IPR033728 Threonine-tRNA ligase catalytic core domain CLM_0245 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CLM_0245 IPR002320 Threonine-tRNA ligase, class IIa CLM_0245 IPR036621 Anticodon-binding domain superfamily CLM_0245 IPR004095 TGS CLM_0245 IPR012675 Beta-grasp domain superfamily CLM_0247 IPR000462 CDP-alcohol phosphatidyltransferase CLM_0247 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase CLM_0248 IPR000644 CBS domain CLM_0249 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLM_0249 IPR001206 Diacylglycerol kinase, catalytic domain CLM_0249 IPR005218 Diacylglycerol/lipid kinase CLM_0249 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLM_0251 IPR024560 Uncharacterised protein family UPF0313, C-terminal CLM_0251 IPR022946 Uncharacterised protein family UPF0313 CLM_0251 IPR023404 Radical SAM, alpha/beta horseshoe CLM_0251 IPR007197 Radical SAM CLM_0251 IPR006638 Elp3/MiaB/NifB CLM_0251 IPR013704 Uncharacterised protein family UPF0313, N-terminal CLM_0254 IPR036366 PGBD superfamily CLM_0254 IPR036365 PGBD-like superfamily CLM_0254 IPR002477 Peptidoglycan binding-like CLM_0254 IPR011105 Cell wall hydrolase, SleB CLM_0254 IPR042047 Cell wall hydrolase SleB, domain 1 CLM_0254 IPR014224 Spore cortex-lytic enzyme SleB CLM_0255 IPR005859 Cysteine synthase CysK CLM_0255 IPR005856 Cysteine synthase CLM_0255 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CLM_0255 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_0255 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_0256 IPR001451 Hexapeptide repeat CLM_0256 IPR018357 Hexapeptide transferase, conserved site CLM_0256 IPR042122 Serine acetyltransferase, N-terminal domain superfamily CLM_0256 IPR005881 Serine O-acetyltransferase CLM_0256 IPR011004 Trimeric LpxA-like superfamily CLM_0257 IPR004155 PBS lyase HEAT-like repeat CLM_0257 IPR011989 Armadillo-like helical CLM_0257 IPR016024 Armadillo-type fold CLM_0257 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0257 IPR004453 Epoxyqueuosine reductase QueG CLM_0257 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0257 IPR013542 Domain of unknown function DUF1730 CLM_0259 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CLM_0259 IPR000445 Helix-hairpin-helix motif CLM_0259 IPR003265 HhH-GPD domain CLM_0259 IPR004036 Endonuclease III-like, conserved site-2 CLM_0259 IPR005759 Endonuclease III CLM_0259 IPR004035 Endonuclease III, iron-sulphur binding site CLM_0259 IPR011257 DNA glycosylase CLM_0259 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CLM_0260 IPR012301 Malic enzyme, N-terminal domain CLM_0260 IPR037062 Malic enzyme, N-terminal domain superfamily CLM_0260 IPR036291 NAD(P)-binding domain superfamily CLM_0260 IPR001891 Malic oxidoreductase CLM_0260 IPR015884 Malic enzyme, conserved site CLM_0260 IPR012302 Malic enzyme, NAD-binding CLM_0261 IPR041424 CinA, KH domain CLM_0261 IPR036653 CinA-like, C-terminal CLM_0261 IPR001453 MoaB/Mog domain CLM_0261 IPR036425 MoaB/Mog-like domain superfamily CLM_0261 IPR008135 Competence-induced protein CinA CLM_0261 IPR008136 CinA, C-terminal CLM_0262 IPR022742 Serine aminopeptidase, S33 CLM_0262 IPR029058 Alpha/Beta hydrolase fold CLM_0263 IPR008007 Peptidase M42 CLM_0263 IPR023367 Peptidase M42, domain 2 CLM_0264 IPR007391 Vancomycin resistance VanW CLM_0265 IPR007391 Vancomycin resistance VanW CLM_0266 IPR007197 Radical SAM CLM_0266 IPR023897 Spore photoproduct lyase CLM_0266 IPR034559 Spore photoproduct lyase, Clostridia type CLM_0267 IPR001537 tRNA/rRNA methyltransferase, SpoU type CLM_0267 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase CLM_0267 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_0267 IPR029028 Alpha/beta knot methyltransferases CLM_0268 IPR003797 DegV CLM_0273 IPR002509 NodB homology domain CLM_0273 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_0274 IPR007634 RNA polymerase sigma factor 54, DNA-binding CLM_0274 IPR000394 RNA polymerase sigma factor 54 CLM_0274 IPR007046 RNA polymerase sigma factor 54, core-binding domain CLM_0274 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily CLM_0275 IPR007324 Sugar-binding domain, putative CLM_0275 IPR036390 Winged helix DNA-binding domain superfamily CLM_0275 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0275 IPR037171 NagB/RpiA transferase-like CLM_0276 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CLM_0276 IPR036291 NAD(P)-binding domain superfamily CLM_0276 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CLM_0276 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CLM_0276 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CLM_0276 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CLM_0277 IPR015911 Phosphoglycerate kinase, conserved site CLM_0277 IPR001576 Phosphoglycerate kinase CLM_0277 IPR036043 Phosphoglycerate kinase superfamily CLM_0277 IPR015824 Phosphoglycerate kinase, N-terminal CLM_0278 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic CLM_0278 IPR000652 Triosephosphate isomerase CLM_0278 IPR020861 Triosephosphate isomerase, active site CLM_0278 IPR035990 Triosephosphate isomerase superfamily CLM_0278 IPR013785 Aldolase-type TIM barrel CLM_0279 IPR011258 BPG-independent PGAM, N-terminal CLM_0279 IPR006124 Metalloenzyme CLM_0279 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent CLM_0279 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLM_0279 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily CLM_0280 IPR029017 Enolase-like, N-terminal CLM_0280 IPR020810 Enolase, C-terminal TIM barrel domain CLM_0280 IPR036849 Enolase-like, C-terminal domain superfamily CLM_0280 IPR000941 Enolase CLM_0280 IPR020809 Enolase, conserved site CLM_0280 IPR020811 Enolase, N-terminal CLM_0282 IPR011129 Cold shock domain CLM_0282 IPR011805 Ribonuclease R CLM_0282 IPR004476 Ribonuclease II/ribonuclease R CLM_0282 IPR040476 RNase II/RNase R, cold shock domain CLM_0282 IPR022966 Ribonuclease II/R, conserved site CLM_0282 IPR001900 Ribonuclease II/R CLM_0282 IPR012340 Nucleic acid-binding, OB-fold CLM_0282 IPR022967 RNA-binding domain, S1 CLM_0282 IPR013223 Ribonuclease B, N-terminal OB domain CLM_0282 IPR003029 S1 domain CLM_0283 IPR030048 Survival protein SurE CLM_0283 IPR002828 Survival protein SurE-like phosphatase/nucleotidase CLM_0283 IPR036523 SurE-like phosphatase/nucleotidase superfamily CLM_0284 IPR000037 SsrA-binding protein CLM_0284 IPR023620 Small protein B CLM_0284 IPR020081 SsrA-binding protein, conserved site CLM_0287 IPR012951 Berberine/berberine-like CLM_0287 IPR016166 FAD-binding domain, PCMH-type CLM_0287 IPR036318 FAD-binding, type PCMH-like superfamily CLM_0287 IPR016167 FAD-binding, type PCMH, subdomain 1 CLM_0287 IPR006094 FAD linked oxidase, N-terminal CLM_0288 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0288 IPR004033 UbiE/COQ5 methyltransferase CLM_0288 IPR023576 UbiE/COQ5 methyltransferase, conserved site CLM_0291 IPR002129 Pyridoxal phosphate-dependent decarboxylase CLM_0291 IPR022517 Aspartate 1-decarboxylase, pyridoxal-dependent CLM_0291 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0291 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0295 IPR039420 Transcriptional regulatory protein WalR-like CLM_0295 IPR001789 Signal transduction response regulator, receiver domain CLM_0295 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0295 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0295 IPR011006 CheY-like superfamily CLM_0295 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0296 IPR003593 AAA+ ATPase domain CLM_0296 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0296 IPR017871 ABC transporter, conserved site CLM_0296 IPR003439 ABC transporter-like CLM_0298 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0298 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0298 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0298 IPR005467 Histidine kinase domain CLM_0298 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0298 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0299 IPR011051 RmlC-like cupin domain superfamily CLM_0299 IPR014710 RmlC-like jelly roll fold CLM_0299 IPR013096 Cupin 2, conserved barrel CLM_0302 IPR004841 Amino acid permease/ SLC12A domain CLM_0302 IPR004840 Amino acid permease, conserved site CLM_0307 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CLM_0307 IPR024072 Dihydrofolate reductase-like domain superfamily CLM_0308 IPR016195 Polymerase/histidinol phosphatase-like CLM_0308 IPR036397 Ribonuclease H superfamily CLM_0308 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_0308 IPR012337 Ribonuclease H-like superfamily CLM_0308 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type CLM_0308 IPR040982 DNA polymerase III alpha subunit finger domain CLM_0308 IPR004013 PHP domain CLM_0308 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CLM_0308 IPR024754 DNA polymerase III polC-like, N-terminal domain II CLM_0308 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_0308 IPR012340 Nucleic acid-binding, OB-fold CLM_0308 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_0308 IPR028112 DNA polymerase III polC-type, N-terminal domain I CLM_0308 IPR029460 DNA polymerase, helix-hairpin-helix motif CLM_0308 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CLM_0314 IPR005562 SpoVA CLM_0314 IPR014204 Sporulation stage V, protein AE CLM_0315 IPR038369 Stage V sporulation AD superfamily CLM_0315 IPR016039 Thiolase-like CLM_0315 IPR010894 Stage V sporulation AD CLM_0316 IPR005562 SpoVA CLM_0316 IPR014203 Sporulation stage V, protein AC CLM_0317 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0317 IPR007353 Protein of unknown function DUF421 CLM_0321 IPR003834 Cytochrome C biogenesis protein, transmembrane domain CLM_0322 IPR017937 Thioredoxin, conserved site CLM_0322 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLM_0322 IPR023555 Thiol-disulphide oxidoreductase ResA CLM_0322 IPR036249 Thioredoxin-like superfamily CLM_0322 IPR013766 Thioredoxin domain CLM_0323 IPR001789 Signal transduction response regulator, receiver domain CLM_0323 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0323 IPR011006 CheY-like superfamily CLM_0323 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0323 IPR039420 Transcriptional regulatory protein WalR-like CLM_0324 IPR005467 Histidine kinase domain CLM_0324 IPR003660 HAMP domain CLM_0324 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0324 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0324 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0324 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0324 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0325 IPR012951 Berberine/berberine-like CLM_0325 IPR016166 FAD-binding domain, PCMH-type CLM_0325 IPR036318 FAD-binding, type PCMH-like superfamily CLM_0325 IPR016167 FAD-binding, type PCMH, subdomain 1 CLM_0325 IPR006094 FAD linked oxidase, N-terminal CLM_0326 IPR036291 NAD(P)-binding domain superfamily CLM_0326 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLM_0326 IPR019802 Glycoside hydrolase, family 4, conserved site CLM_0326 IPR001088 Glycoside hydrolase, family 4 CLM_0326 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLM_0327 IPR003352 Phosphotransferase system, EIIC CLM_0327 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_0327 IPR036878 Glucose permease domain IIB CLM_0327 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_0327 IPR011301 PTS system, maltose/glucose-specific IIBC component CLM_0327 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLM_0327 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_0328 IPR000281 Helix-turn-helix protein RpiR CLM_0328 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0328 IPR001347 Sugar isomerase (SIS) CLM_0328 IPR035472 RpiR-like, SIS domain CLM_0328 IPR009057 Homeobox-like domain superfamily CLM_0330 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_0330 IPR011055 Duplicated hybrid motif CLM_0331 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0331 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0331 IPR001789 Signal transduction response regulator, receiver domain CLM_0331 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0331 IPR011006 CheY-like superfamily CLM_0331 IPR039420 Transcriptional regulatory protein WalR-like CLM_0332 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0332 IPR005467 Histidine kinase domain CLM_0332 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0332 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0333 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0333 IPR003439 ABC transporter-like CLM_0333 IPR003593 AAA+ ATPase domain CLM_0334 IPR027022 ABC transporter permease protein, BceB-type CLM_0334 IPR003838 ABC transporter permease protein domain CLM_0335 IPR003352 Phosphotransferase system, EIIC CLM_0335 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_0335 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_0335 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_0335 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLM_0335 IPR036878 Glucose permease domain IIB CLM_0335 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component CLM_0336 IPR036291 NAD(P)-binding domain superfamily CLM_0336 IPR019802 Glycoside hydrolase, family 4, conserved site CLM_0336 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLM_0336 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLM_0336 IPR001088 Glycoside hydrolase, family 4 CLM_0337 IPR036878 Glucose permease domain IIB CLM_0337 IPR011055 Duplicated hybrid motif CLM_0337 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_0337 IPR011299 PTS system glucose-specific IIBC component CLM_0337 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLM_0337 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_0337 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_0337 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_0337 IPR003352 Phosphotransferase system, EIIC CLM_0340 IPR012156 Cold shock, CspA CLM_0340 IPR019844 Cold-shock (CSD) domain CLM_0340 IPR002059 Cold-shock protein, DNA-binding CLM_0340 IPR012340 Nucleic acid-binding, OB-fold CLM_0340 IPR011129 Cold shock domain CLM_0342 IPR036390 Winged helix DNA-binding domain superfamily CLM_0342 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0342 IPR000944 Transcription regulator Rrf2-type CLM_0343 IPR001853 DSBA-like thioredoxin domain CLM_0343 IPR036249 Thioredoxin-like superfamily CLM_0344 IPR036291 NAD(P)-binding domain superfamily CLM_0344 IPR016040 NAD(P)-binding domain CLM_0345 IPR001347 Sugar isomerase (SIS) CLM_0345 IPR035472 RpiR-like, SIS domain CLM_0345 IPR000281 Helix-turn-helix protein RpiR CLM_0345 IPR009057 Homeobox-like domain superfamily CLM_0345 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0346 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLM_0346 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_0346 IPR011301 PTS system, maltose/glucose-specific IIBC component CLM_0346 IPR036878 Glucose permease domain IIB CLM_0346 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_0346 IPR003352 Phosphotransferase system, EIIC CLM_0346 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_0347 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLM_0347 IPR001088 Glycoside hydrolase, family 4 CLM_0347 IPR019802 Glycoside hydrolase, family 4, conserved site CLM_0347 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLM_0347 IPR036291 NAD(P)-binding domain superfamily CLM_0348 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_0348 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_0348 IPR036878 Glucose permease domain IIB CLM_0348 IPR011055 Duplicated hybrid motif CLM_0348 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_0348 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_0348 IPR003352 Phosphotransferase system, EIIC CLM_0348 IPR011299 PTS system glucose-specific IIBC component CLM_0349 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site CLM_0349 IPR004404 Dihydroxy-acid dehydratase CLM_0349 IPR042096 Dihydroxy-acid dehydratase, C-terminal CLM_0349 IPR037237 IlvD/EDD, N-terminal domain CLM_0349 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase CLM_0351 IPR030830 5-Dehydro-2-deoxygluconokinase CLM_0351 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily CLM_0351 IPR011611 Carbohydrate kinase PfkB CLM_0351 IPR029056 Ribokinase-like CLM_0351 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes CLM_0351 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLM_0352 IPR032466 Metal-dependent hydrolase CLM_0352 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_0352 IPR006680 Amidohydrolase-related CLM_0352 IPR026912 Adenine deaminase C-terminal domain CLM_0352 IPR006679 Adenine deaminase CLM_0353 IPR011006 CheY-like superfamily CLM_0353 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0353 IPR001789 Signal transduction response regulator, receiver domain CLM_0353 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0353 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0353 IPR039420 Transcriptional regulatory protein WalR-like CLM_0354 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0354 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0354 IPR003660 HAMP domain CLM_0354 IPR005467 Histidine kinase domain CLM_0354 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0354 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0354 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0355 IPR001173 Glycosyltransferase 2-like CLM_0355 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0356 IPR007267 GtrA-like protein CLM_0357 IPR038731 Glycosyltransferase RgtA/B/C/D-like CLM_0358 IPR014710 RmlC-like jelly roll fold CLM_0358 IPR020449 Transcription regulator HTH, AraC- type CLM_0358 IPR009057 Homeobox-like domain superfamily CLM_0358 IPR032783 AraC-type transcription regulator, ligand-binding domain CLM_0358 IPR011051 RmlC-like cupin domain superfamily CLM_0358 IPR018060 DNA binding HTH domain, AraC-type CLM_0362 IPR003439 ABC transporter-like CLM_0362 IPR003593 AAA+ ATPase domain CLM_0362 IPR017871 ABC transporter, conserved site CLM_0362 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0365 IPR004568 Phosphopantetheine-protein transferase domain CLM_0365 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CLM_0365 IPR008278 4'-phosphopantetheinyl transferase domain CLM_0366 IPR001031 Thioesterase CLM_0366 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS CLM_0366 IPR029058 Alpha/Beta hydrolase fold CLM_0367 IPR007492 LytTR DNA-binding domain CLM_0367 IPR001789 Signal transduction response regulator, receiver domain CLM_0367 IPR011006 CheY-like superfamily CLM_0369 IPR006162 Phosphopantetheine attachment site CLM_0369 IPR009081 Phosphopantetheine binding ACP domain CLM_0369 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLM_0369 IPR010060 Non-ribosomal peptide synthase CLM_0369 IPR001242 Condensation domain CLM_0369 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_0369 IPR042099 AMP-dependent synthetase-like superfamily CLM_0369 IPR000873 AMP-dependent synthetase/ligase CLM_0369 IPR020845 AMP-binding, conserved site CLM_0369 IPR010071 Amino acid adenylation domain CLM_0369 IPR036736 ACP-like superfamily CLM_0369 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0370 IPR009010 Aspartate decarboxylase-like domain superfamily CLM_0370 IPR003190 Aspartate decarboxylase CLM_0371 IPR001466 Beta-lactamase-related CLM_0371 IPR012338 Beta-lactamase/transpeptidase-like CLM_0372 IPR005898 Cyclic peptide transporter CLM_0372 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0372 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_0372 IPR011527 ABC transporter type 1, transmembrane domain CLM_0372 IPR003593 AAA+ ATPase domain CLM_0372 IPR017871 ABC transporter, conserved site CLM_0372 IPR003439 ABC transporter-like CLM_0373 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0373 IPR000873 AMP-dependent synthetase/ligase CLM_0373 IPR029058 Alpha/Beta hydrolase fold CLM_0373 IPR010071 Amino acid adenylation domain CLM_0373 IPR042099 AMP-dependent synthetase-like superfamily CLM_0373 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_0373 IPR001242 Condensation domain CLM_0373 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLM_0373 IPR009081 Phosphopantetheine binding ACP domain CLM_0373 IPR006162 Phosphopantetheine attachment site CLM_0373 IPR001031 Thioesterase CLM_0373 IPR020845 AMP-binding, conserved site CLM_0373 IPR036736 ACP-like superfamily CLM_0374 IPR042099 AMP-dependent synthetase-like superfamily CLM_0374 IPR000873 AMP-dependent synthetase/ligase CLM_0374 IPR009081 Phosphopantetheine binding ACP domain CLM_0374 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0374 IPR036736 ACP-like superfamily CLM_0374 IPR029058 Alpha/Beta hydrolase fold CLM_0374 IPR010071 Amino acid adenylation domain CLM_0374 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_0374 IPR020845 AMP-binding, conserved site CLM_0374 IPR001242 Condensation domain CLM_0374 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLM_0374 IPR010060 Non-ribosomal peptide synthase CLM_0374 IPR001031 Thioesterase CLM_0374 IPR006162 Phosphopantetheine attachment site CLM_0375 IPR006162 Phosphopantetheine attachment site CLM_0375 IPR009081 Phosphopantetheine binding ACP domain CLM_0375 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLM_0375 IPR010060 Non-ribosomal peptide synthase CLM_0375 IPR001242 Condensation domain CLM_0375 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_0375 IPR010071 Amino acid adenylation domain CLM_0375 IPR042099 AMP-dependent synthetase-like superfamily CLM_0375 IPR020845 AMP-binding, conserved site CLM_0375 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0375 IPR000873 AMP-dependent synthetase/ligase CLM_0375 IPR036736 ACP-like superfamily CLM_0378 IPR002491 ABC transporter periplasmic binding domain CLM_0379 IPR000522 ABC transporter, permease protein, BtuC-like CLM_0379 IPR037294 ABC transporter, BtuC-like CLM_0380 IPR037294 ABC transporter, BtuC-like CLM_0380 IPR000522 ABC transporter, permease protein, BtuC-like CLM_0381 IPR003593 AAA+ ATPase domain CLM_0381 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0381 IPR017871 ABC transporter, conserved site CLM_0381 IPR003439 ABC transporter-like CLM_0382 IPR039421 Type I protein exporter CLM_0382 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0382 IPR017871 ABC transporter, conserved site CLM_0382 IPR003593 AAA+ ATPase domain CLM_0382 IPR003439 ABC transporter-like CLM_0382 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_0382 IPR011527 ABC transporter type 1, transmembrane domain CLM_0384 IPR006042 Xanthine/uracil permease CLM_0384 IPR017588 Uric acid permease UacT-like CLM_0384 IPR006043 Xanthine/uracil/vitamin C permease CLM_0385 IPR000836 Phosphoribosyltransferase domain CLM_0385 IPR010079 Xanthine phosphoribosyltransferase CLM_0385 IPR029057 Phosphoribosyltransferase-like CLM_0386 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0386 IPR039420 Transcriptional regulatory protein WalR-like CLM_0386 IPR001789 Signal transduction response regulator, receiver domain CLM_0386 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0386 IPR011006 CheY-like superfamily CLM_0386 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0387 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0387 IPR005467 Histidine kinase domain CLM_0387 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0387 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0387 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0389 IPR003439 ABC transporter-like CLM_0389 IPR003593 AAA+ ATPase domain CLM_0389 IPR017871 ABC transporter, conserved site CLM_0389 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0390 IPR003838 ABC transporter permease protein domain CLM_0390 IPR027022 ABC transporter permease protein, BceB-type CLM_0392 IPR023736 Antiholin-like protein LrgA CLM_0392 IPR005538 LrgA/CidA family CLM_0393 IPR007300 CidB/LrgB family CLM_0393 IPR024891 Antiholin-like protein LrgB CLM_0396 IPR014999 Uncharacterised protein family UPF0371 CLM_0399 IPR006741 Accessory gene regulator B CLM_0399 IPR036259 MFS transporter superfamily CLM_0401 IPR001294 Phytochrome CLM_0401 IPR016132 Phytochrome chromophore attachment domain CLM_0401 IPR029787 Nucleotide cyclase CLM_0401 IPR000160 GGDEF domain CLM_0401 IPR013515 Phytochrome, central region CLM_0401 IPR001633 EAL domain CLM_0401 IPR035919 EAL domain superfamily CLM_0401 IPR003018 GAF domain CLM_0401 IPR029016 GAF-like domain superfamily CLM_0404 IPR003660 HAMP domain CLM_0404 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0404 IPR000014 PAS domain CLM_0404 IPR041328 ResE, histidine kinase sensor domain CLM_0404 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0404 IPR035965 PAS domain superfamily CLM_0404 IPR005467 Histidine kinase domain CLM_0404 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0404 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0404 IPR013767 PAS fold CLM_0404 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0406 IPR036259 MFS transporter superfamily CLM_0406 IPR006741 Accessory gene regulator B CLM_0408 IPR013767 PAS fold CLM_0408 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0408 IPR005467 Histidine kinase domain CLM_0408 IPR035965 PAS domain superfamily CLM_0408 IPR000014 PAS domain CLM_0408 IPR041328 ResE, histidine kinase sensor domain CLM_0408 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0408 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0408 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0408 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0408 IPR003660 HAMP domain CLM_0409 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase CLM_0409 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CLM_0409 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type CLM_0409 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0410 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0410 IPR026281 HTH-type transcriptional regulator RamB CLM_0410 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0410 IPR018653 Domain of unknown function DUF2083,transcriptional regulator CLM_0410 IPR010359 IrrE N-terminal-like domain CLM_0411 IPR002293 Amino acid/polyamine transporter I CLM_0412 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CLM_0412 IPR001714 Peptidase M24, methionine aminopeptidase CLM_0412 IPR000994 Peptidase M24 CLM_0412 IPR000587 Creatinase, N-terminal CLM_0412 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_0412 IPR036005 Creatinase/aminopeptidase-like CLM_0413 IPR016161 Aldehyde/histidinol dehydrogenase CLM_0413 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase CLM_0413 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_0413 IPR039697 Iron-type alcohol dehydrogenase-like CLM_0413 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain CLM_0413 IPR015590 Aldehyde dehydrogenase domain CLM_0413 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_0413 IPR016162 Aldehyde dehydrogenase, N-terminal CLM_0413 IPR016163 Aldehyde dehydrogenase, C-terminal CLM_0418 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLM_0418 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLM_0419 IPR005084 Carbohydrate binding module family 6 CLM_0419 IPR033119 Glycoside hydrolase family 11, active site 2 CLM_0419 IPR018208 Glycoside hydrolase family 11, active site 1 CLM_0419 IPR033123 Glycosyl hydrolases family 11 (GH11) domain CLM_0419 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_0419 IPR002509 NodB homology domain CLM_0419 IPR001137 Glycoside hydrolase family 11 CLM_0419 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_0419 IPR013319 Glycoside hydrolase family 11/12 CLM_0419 IPR008979 Galactose-binding-like domain superfamily CLM_0420 IPR039420 Transcriptional regulatory protein WalR-like CLM_0420 IPR001789 Signal transduction response regulator, receiver domain CLM_0420 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0420 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0420 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0420 IPR011006 CheY-like superfamily CLM_0421 IPR003660 HAMP domain CLM_0421 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0421 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0421 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0421 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0421 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0421 IPR005467 Histidine kinase domain CLM_0423 IPR010719 Putative rRNA methylase CLM_0423 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0424 IPR015414 Transmembrane protein TMEM64 CLM_0424 IPR032816 SNARE associated Golgi protein CLM_0425 IPR035919 EAL domain superfamily CLM_0425 IPR005330 MHYT domain CLM_0425 IPR029787 Nucleotide cyclase CLM_0425 IPR000160 GGDEF domain CLM_0425 IPR001633 EAL domain CLM_0429 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLM_0429 IPR036318 FAD-binding, type PCMH-like superfamily CLM_0429 IPR006037 Regulator of K+ conductance, C-terminal CLM_0429 IPR023729 K(+)/H(+) antiporter NhaP2 CLM_0429 IPR030151 K(+)/H(+) antiporter NhaP CLM_0429 IPR038770 Sodium/solute symporter superfamily CLM_0429 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_0429 IPR006153 Cation/H+ exchanger CLM_0429 IPR005170 Transporter-associated domain CLM_0430 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0430 IPR000192 Aminotransferase class V domain CLM_0430 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0430 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0430 IPR016454 Cysteine desulfurase CLM_0430 IPR010970 Cysteine desulfurase, SufS CLM_0430 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_0431 IPR018383 Uncharacterised protein family UPF0324, prokaryote CLM_0433 IPR011006 CheY-like superfamily CLM_0433 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0433 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0433 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0433 IPR001789 Signal transduction response regulator, receiver domain CLM_0433 IPR039420 Transcriptional regulatory protein WalR-like CLM_0434 IPR003660 HAMP domain CLM_0434 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0434 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0434 IPR001610 PAC motif CLM_0434 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0434 IPR035965 PAS domain superfamily CLM_0434 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0434 IPR000014 PAS domain CLM_0434 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0434 IPR005467 Histidine kinase domain CLM_0434 IPR000700 PAS-associated, C-terminal CLM_0435 IPR018212 Sodium/solute symporter, conserved site CLM_0435 IPR001734 Sodium/solute symporter CLM_0435 IPR038377 Sodium/glucose symporter superfamily CLM_0436 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CLM_0436 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CLM_0436 IPR026902 RnfC Barrel sandwich hybrid domain CLM_0436 IPR019554 Soluble ligand binding domain CLM_0436 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0436 IPR009051 Alpha-helical ferredoxin CLM_0436 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0436 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC CLM_0437 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D CLM_0437 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD CLM_0438 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG CLM_0438 IPR007329 FMN-binding CLM_0439 IPR010968 Ion-translocating oxidoreductase complex subunit E CLM_0439 IPR003667 NqrDE/RnfAE CLM_0440 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA CLM_0440 IPR003667 NqrDE/RnfAE CLM_0441 IPR007202 4Fe-4S domain CLM_0441 IPR011005 Dihydropteroate synthase-like CLM_0441 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB CLM_0441 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0441 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0445 IPR024932 Flavin transferase ApbE CLM_0445 IPR042159 Flavin-trafficking protein ApbE CLM_0445 IPR003374 ApbE-like superfamily CLM_0451 IPR007253 Putative cell wall binding repeat 2 CLM_0451 IPR013486 Sporulation stage II protein D, amidase enhancer LytB CLM_0451 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal CLM_0454 IPR024370 PBP domain CLM_0454 IPR011862 Phosphate binding protein CLM_0455 IPR011864 Phosphate ABC transporter, permease protein PstC CLM_0455 IPR035906 MetI-like superfamily CLM_0455 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_0456 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_0456 IPR005672 Phosphate transport system permease protein PstA CLM_0456 IPR035906 MetI-like superfamily CLM_0457 IPR003593 AAA+ ATPase domain CLM_0457 IPR003439 ABC transporter-like CLM_0457 IPR017871 ABC transporter, conserved site CLM_0457 IPR015850 ABC transporter, phosphate import, PstB CLM_0457 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0457 IPR005670 Phosphate transport system permease protein 1 CLM_0459 IPR002293 Amino acid/polyamine transporter I CLM_0463 IPR012340 Nucleic acid-binding, OB-fold CLM_0463 IPR000424 Primosome PriB/single-strand DNA-binding CLM_0463 IPR011344 Single-stranded DNA-binding protein CLM_0464 IPR022929 Putative manganese efflux pump MntP CLM_0464 IPR003810 Putative manganese efflux pump CLM_0466 IPR002481 Ferric-uptake regulator CLM_0466 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0466 IPR036390 Winged helix DNA-binding domain superfamily CLM_0467 IPR003607 HD/PDEase domain CLM_0467 IPR006674 HD domain CLM_0467 IPR037522 HD-GYP domain CLM_0467 IPR006675 HDIG domain CLM_0467 IPR021812 Protein of unknown function DUF3391 CLM_0468 IPR022764 Peptidase S54, rhomboid domain CLM_0468 IPR035952 Rhomboid-like superfamily CLM_0468 IPR011990 Tetratricopeptide-like helical domain superfamily CLM_0468 IPR019734 Tetratricopeptide repeat CLM_0468 IPR013026 Tetratricopeptide repeat-containing domain CLM_0469 IPR003660 HAMP domain CLM_0469 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0469 IPR029151 Periplasmic sensor-like domain superfamily CLM_0469 IPR033479 Double Cache domain 1 CLM_0470 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0470 IPR005936 Peptidase, FtsH CLM_0470 IPR003593 AAA+ ATPase domain CLM_0470 IPR003960 ATPase, AAA-type, conserved site CLM_0470 IPR011546 Peptidase M41, FtsH extracellular CLM_0470 IPR003959 ATPase, AAA-type, core CLM_0470 IPR041569 AAA ATPase, AAA+ lid domain CLM_0470 IPR037219 Peptidase M41-like CLM_0470 IPR000642 Peptidase M41 CLM_0472 IPR022892 Ribonuclease HI CLM_0472 IPR036397 Ribonuclease H superfamily CLM_0472 IPR002156 Ribonuclease H domain CLM_0472 IPR012337 Ribonuclease H-like superfamily CLM_0480 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0480 IPR041546 ClpA/ClpB, AAA lid domain CLM_0480 IPR003593 AAA+ ATPase domain CLM_0480 IPR003959 ATPase, AAA-type, core CLM_0480 IPR017730 Chaperonin ClpB CLM_0480 IPR019489 Clp ATPase, C-terminal CLM_0480 IPR028299 ClpA/B, conserved site 2 CLM_0480 IPR018368 ClpA/B, conserved site 1 CLM_0480 IPR001270 ClpA/B family CLM_0480 IPR004176 Clp, N-terminal CLM_0480 IPR036628 Clp, N-terminal domain superfamily CLM_0481 IPR029062 Class I glutamine amidotransferase-like CLM_0481 IPR017929 CobB/CobQ glutamine amidotransferase CLM_0481 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 CLM_0481 IPR011698 CobB/CobQ-like glutamine amidotransferase CLM_0482 IPR013221 Mur ligase, central CLM_0482 IPR013564 Domain of unknown function DUF1727 CLM_0482 IPR036565 Mur-like, catalytic domain superfamily CLM_0483 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form CLM_0483 IPR001250 Mannose-6-phosphate isomerase, type I CLM_0483 IPR014710 RmlC-like jelly roll fold CLM_0483 IPR011051 RmlC-like cupin domain superfamily CLM_0485 IPR003824 Undecaprenyl-diphosphatase UppP CLM_0494 IPR001279 Metallo-beta-lactamase CLM_0494 IPR022877 Protein of unknown funcion UPF0173 CLM_0494 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0496 IPR013785 Aldolase-type TIM barrel CLM_0496 IPR000891 Pyruvate carboxyltransferase CLM_0497 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic CLM_0497 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit CLM_0497 IPR033941 3-Isopropylmalate dehydratase, catalytic domain CLM_0497 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CLM_0497 IPR018136 Aconitase family, 4Fe-4S cluster binding site CLM_0497 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CLM_0497 IPR036008 Aconitase, iron-sulfur domain CLM_0498 IPR024084 Isopropylmalate dehydrogenase-like domain CLM_0498 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CLM_0498 IPR040978 Hypothetical protein TT1725 CLM_0499 IPR003593 AAA+ ATPase domain CLM_0499 IPR017871 ABC transporter, conserved site CLM_0499 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0499 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLM_0499 IPR003439 ABC transporter-like CLM_0501 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CLM_0502 IPR007211 Protein of unknown function DUF378 CLM_0503 IPR009010 Aspartate decarboxylase-like domain superfamily CLM_0503 IPR003190 Aspartate decarboxylase CLM_0504 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0504 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain CLM_0504 IPR003721 Pantoate-beta-alanine ligase CLM_0504 IPR004821 Cytidyltransferase-like domain CLM_0505 IPR003700 Ketopantoate hydroxymethyltransferase CLM_0505 IPR040442 Pyruvate kinase-like domain superfamily CLM_0505 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLM_0506 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLM_0506 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0506 IPR014140 DNA helicase subunit AddB CLM_0510 IPR013572 Transcription regulator MAATS, C-terminal CLM_0510 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_0510 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_0510 IPR009057 Homeobox-like domain superfamily CLM_0510 IPR001647 DNA-binding HTH domain, TetR-type CLM_0511 IPR003593 AAA+ ATPase domain CLM_0511 IPR004392 Hydrogenase maturation factor HypB CLM_0511 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0511 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CLM_0512 IPR023753 FAD/NAD(P)-binding domain CLM_0512 IPR009051 Alpha-helical ferredoxin CLM_0512 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain CLM_0512 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily CLM_0512 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0512 IPR028261 Dihydroprymidine dehydrogenase domain II CLM_0513 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site CLM_0513 IPR000688 Hydrogenase maturation factor HypA/HybF CLM_0518 IPR011604 Exonuclease, phage-type/RecB, C-terminal CLM_0518 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLM_0518 IPR014016 UvrD-like helicase, ATP-binding domain CLM_0518 IPR034739 UvrD/AddA helicase, N-terminal CLM_0518 IPR014152 DNA helicase subunit AddA CLM_0518 IPR014017 UvrD-like DNA helicase, C-terminal CLM_0518 IPR000212 DNA helicase, UvrD/REP type CLM_0518 IPR011335 Restriction endonuclease type II-like CLM_0518 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0519 IPR004090 Chemotaxis methyl-accepting receptor CLM_0519 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0519 IPR029151 Periplasmic sensor-like domain superfamily CLM_0519 IPR033463 Single cache domain 3 CLM_0519 IPR003660 HAMP domain CLM_0520 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CLM_0520 IPR036264 Bacterial exopeptidase dimerisation domain CLM_0520 IPR010161 Peptidase M20B, tripeptide aminopeptidase CLM_0520 IPR011650 Peptidase M20, dimerisation domain CLM_0520 IPR002933 Peptidase M20 CLM_0521 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_0521 IPR002641 Patatin-like phospholipase domain CLM_0524 IPR016181 Acyl-CoA N-acyltransferase CLM_0524 IPR000182 GNAT domain CLM_0524 IPR006464 N-acetyltransferase RimI/Ard1 CLM_0528 IPR018313 Solute-binding protein family 3, conserved site CLM_0528 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter CLM_0528 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_0529 IPR023576 UbiE/COQ5 methyltransferase, conserved site CLM_0529 IPR004033 UbiE/COQ5 methyltransferase CLM_0529 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0530 IPR035919 EAL domain superfamily CLM_0530 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing CLM_0530 IPR013976 Metal-dependent hydrolase HDOD CLM_0530 IPR001633 EAL domain CLM_0531 IPR022998 Thiamine phosphate synthase/TenI CLM_0531 IPR034291 Thiamine phosphate synthase CLM_0531 IPR013785 Aldolase-type TIM barrel CLM_0531 IPR036206 Thiamin phosphate synthase superfamily CLM_0532 IPR029056 Ribokinase-like CLM_0532 IPR000417 Hydroxyethylthiazole kinase CLM_0533 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CLM_0533 IPR013785 Aldolase-type TIM barrel CLM_0533 IPR036206 Thiamin phosphate synthase superfamily CLM_0533 IPR022998 Thiamine phosphate synthase/TenI CLM_0533 IPR029056 Ribokinase-like CLM_0533 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CLM_0533 IPR034291 Thiamine phosphate synthase CLM_0535 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CLM_0535 IPR005905 D-alanine--D-alanine ligase CLM_0535 IPR016185 Pre-ATP-grasp domain superfamily CLM_0535 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CLM_0535 IPR011095 D-alanine--D-alanine ligase, C-terminal CLM_0535 IPR013815 ATP-grasp fold, subdomain 1 CLM_0535 IPR011761 ATP-grasp fold CLM_0536 IPR028082 Periplasmic binding protein-like I CLM_0536 IPR000709 Leu/Ile/Val-binding protein CLM_0536 IPR028081 Leucine-binding protein domain CLM_0537 IPR001851 ABC transporter, permease CLM_0538 IPR001851 ABC transporter, permease CLM_0538 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal CLM_0539 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0539 IPR003593 AAA+ ATPase domain CLM_0539 IPR003439 ABC transporter-like CLM_0539 IPR017871 ABC transporter, conserved site CLM_0539 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CLM_0540 IPR003439 ABC transporter-like CLM_0540 IPR017871 ABC transporter, conserved site CLM_0540 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein CLM_0540 IPR003593 AAA+ ATPase domain CLM_0540 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0544 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0544 IPR036390 Winged helix DNA-binding domain superfamily CLM_0544 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0544 IPR000524 Transcription regulator HTH, GntR CLM_0544 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0544 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0544 IPR004839 Aminotransferase, class I/classII CLM_0547 IPR007621 TPM domain CLM_0548 IPR020084 NUDIX hydrolase, conserved site CLM_0548 IPR015797 NUDIX hydrolase-like domain superfamily CLM_0548 IPR036412 HAD-like superfamily CLM_0548 IPR023214 HAD superfamily CLM_0548 IPR006357 HAD-superfamily hydrolase, subfamily IIA CLM_0548 IPR020476 NUDIX hydrolase CLM_0548 IPR000086 NUDIX hydrolase domain CLM_0551 IPR004033 UbiE/COQ5 methyltransferase CLM_0551 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0551 IPR023576 UbiE/COQ5 methyltransferase, conserved site CLM_0552 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0552 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0555 IPR004593 Nuclease SbcCD subunit D CLM_0555 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLM_0555 IPR029052 Metallo-dependent phosphatase-like CLM_0555 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain CLM_0555 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CLM_0556 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0556 IPR041685 AAA domain, group 15 CLM_0558 IPR003740 Uncharacterised membrane protein YitT CLM_0558 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_0558 IPR019264 Domain of unknown function DUF2179 CLM_0560 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0560 IPR001845 HTH ArsR-type DNA-binding domain CLM_0560 IPR036390 Winged helix DNA-binding domain superfamily CLM_0560 IPR011991 ArsR-like helix-turn-helix domain CLM_0560 IPR018334 ArsR-type transcription regulator, HTH motif CLM_0561 IPR018303 P-type ATPase, phosphorylation site CLM_0561 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_0561 IPR008250 P-type ATPase, A domain superfamily CLM_0561 IPR036412 HAD-like superfamily CLM_0561 IPR023214 HAD superfamily CLM_0561 IPR017969 Heavy-metal-associated, conserved site CLM_0561 IPR006121 Heavy metal-associated domain, HMA CLM_0561 IPR036163 Heavy metal-associated domain superfamily CLM_0561 IPR001757 P-type ATPase CLM_0561 IPR023299 P-type ATPase, cytoplasmic domain N CLM_0561 IPR027256 P-type ATPase, subfamily IB CLM_0563 IPR000064 Endopeptidase, NLPC/P60 domain CLM_0563 IPR038765 Papain-like cysteine peptidase superfamily CLM_0569 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0569 IPR003714 PhoH-like protein CLM_0569 IPR029060 PIN-like domain superfamily CLM_0569 IPR002716 PIN domain CLM_0570 IPR024535 Pectate lyase superfamily protein CLM_0570 IPR012334 Pectin lyase fold CLM_0570 IPR018711 Phosphodiester glycosidase CLM_0570 IPR011050 Pectin lyase fold/virulence factor CLM_0578 IPR003593 AAA+ ATPase domain CLM_0578 IPR003439 ABC transporter-like CLM_0578 IPR017871 ABC transporter, conserved site CLM_0578 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0582 IPR008915 Peptidase M50 CLM_0583 IPR017202 Sensor histidine kinase LiaS/VraS CLM_0583 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLM_0583 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0583 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0584 IPR001789 Signal transduction response regulator, receiver domain CLM_0584 IPR011006 CheY-like superfamily CLM_0584 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0584 IPR000792 Transcription regulator LuxR, C-terminal CLM_0585 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0585 IPR003593 AAA+ ATPase domain CLM_0585 IPR017871 ABC transporter, conserved site CLM_0585 IPR003439 ABC transporter-like CLM_0587 IPR000412 ABC-2 transporter CLM_0589 IPR000802 Arsenical pump membrane protein, ArsB CLM_0589 IPR004680 Citrate transporter-like domain CLM_0591 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0591 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type CLM_0593 IPR013740 Redoxin CLM_0593 IPR013766 Thioredoxin domain CLM_0593 IPR018219 Thiol peroxidase conserved site CLM_0593 IPR002065 Thiol peroxidase Tpx CLM_0593 IPR036249 Thioredoxin-like superfamily CLM_0594 IPR036291 NAD(P)-binding domain superfamily CLM_0594 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CLM_0594 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0596 IPR038765 Papain-like cysteine peptidase superfamily CLM_0596 IPR000064 Endopeptidase, NLPC/P60 domain CLM_0597 IPR022742 Serine aminopeptidase, S33 CLM_0597 IPR029058 Alpha/Beta hydrolase fold CLM_0597 IPR000073 Alpha/beta hydrolase fold-1 CLM_0598 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0598 IPR001789 Signal transduction response regulator, receiver domain CLM_0598 IPR039420 Transcriptional regulatory protein WalR-like CLM_0598 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0598 IPR011006 CheY-like superfamily CLM_0599 IPR006674 HD domain CLM_0599 IPR021812 Protein of unknown function DUF3391 CLM_0599 IPR003607 HD/PDEase domain CLM_0599 IPR037522 HD-GYP domain CLM_0599 IPR006675 HDIG domain CLM_0600 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0600 IPR029151 Periplasmic sensor-like domain superfamily CLM_0600 IPR003660 HAMP domain CLM_0600 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_0600 IPR033479 Double Cache domain 1 CLM_0601 IPR001789 Signal transduction response regulator, receiver domain CLM_0601 IPR011006 CheY-like superfamily CLM_0602 IPR002317 Serine-tRNA ligase, type1 CLM_0602 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily CLM_0602 IPR033729 Serine-tRNA ligase catalytic core domain CLM_0602 IPR015866 Serine-tRNA synthetase, type1, N-terminal CLM_0602 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_0602 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLM_0602 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_0603 IPR006555 ATP-dependent helicase, C-terminal CLM_0603 IPR039000 ATP-dependent DNA helicase DinG CLM_0603 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type CLM_0603 IPR006554 Helicase-like, DEXD box c2 type CLM_0603 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_0603 IPR001650 Helicase, C-terminal CLM_0603 IPR010614 DEAD2 CLM_0603 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0603 IPR011545 DEAD/DEAH box helicase domain CLM_0606 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CLM_0606 IPR036291 NAD(P)-binding domain superfamily CLM_0606 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CLM_0607 IPR009164 Fructose-1,6-bisphosphatase class 3 CLM_0609 IPR012827 Haemerythrin, metal-binding domain CLM_0609 IPR035938 Hemerythrin-like superfamily CLM_0609 IPR016131 Haemerythrin, iron-binding site CLM_0609 IPR012312 Haemerythrin-like CLM_0609 IPR023504 Bacteriohemerythrin-like protein CLM_0612 IPR019831 Manganese/iron superoxide dismutase, N-terminal CLM_0612 IPR019832 Manganese/iron superoxide dismutase, C-terminal CLM_0612 IPR001189 Manganese/iron superoxide dismutase CLM_0612 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CLM_0612 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CLM_0614 IPR023885 4Fe4S-binding SPASM domain CLM_0614 IPR013785 Aldolase-type TIM barrel CLM_0614 IPR034485 Anaerobic Cys-type sulfatase-maturating enzyme CLM_0614 IPR007197 Radical SAM CLM_0619 IPR003593 AAA+ ATPase domain CLM_0619 IPR039421 Type I protein exporter CLM_0619 IPR011527 ABC transporter type 1, transmembrane domain CLM_0619 IPR003439 ABC transporter-like CLM_0619 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0619 IPR017871 ABC transporter, conserved site CLM_0619 IPR011917 ABC transporter, lipid A export, MsbA CLM_0619 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_0620 IPR036641 HPT domain superfamily CLM_0620 IPR001789 Signal transduction response regulator, receiver domain CLM_0620 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0620 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain CLM_0620 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0620 IPR011006 CheY-like superfamily CLM_0620 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0620 IPR039420 Transcriptional regulatory protein WalR-like CLM_0621 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0621 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0621 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0621 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0621 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0621 IPR005467 Histidine kinase domain CLM_0622 IPR003593 AAA+ ATPase domain CLM_0622 IPR003439 ABC transporter-like CLM_0622 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0625 IPR002293 Amino acid/polyamine transporter I CLM_0627 IPR000485 AsnC-type HTH domain CLM_0627 IPR011991 ArsR-like helix-turn-helix domain CLM_0627 IPR011008 Dimeric alpha-beta barrel CLM_0627 IPR036390 Winged helix DNA-binding domain superfamily CLM_0627 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0627 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CLM_0627 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLM_0627 IPR019888 Transcription regulator AsnC-type CLM_0629 IPR002293 Amino acid/polyamine transporter I CLM_0630 IPR002293 Amino acid/polyamine transporter I CLM_0631 IPR011004 Trimeric LpxA-like superfamily CLM_0631 IPR001451 Hexapeptide repeat CLM_0631 IPR023446 Carnitine operon protein CaiE CLM_0632 IPR004797 Competence protein ComEC/Rec2 CLM_0632 IPR001279 Metallo-beta-lactamase CLM_0632 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0632 IPR035681 ComA-like, MBL domain CLM_0632 IPR004477 ComEC/Rec2-related protein CLM_0633 IPR008250 P-type ATPase, A domain superfamily CLM_0633 IPR036412 HAD-like superfamily CLM_0633 IPR023214 HAD superfamily CLM_0633 IPR018303 P-type ATPase, phosphorylation site CLM_0633 IPR023299 P-type ATPase, cytoplasmic domain N CLM_0633 IPR004014 Cation-transporting P-type ATPase, N-terminal CLM_0633 IPR006068 Cation-transporting P-type ATPase, C-terminal CLM_0633 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_0633 IPR001757 P-type ATPase CLM_0635 IPR003370 Chromate transporter CLM_0636 IPR003370 Chromate transporter CLM_0637 IPR003477 mRNA interferase PemK-like CLM_0637 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CLM_0639 IPR036526 Carbon-nitrogen hydrolase superfamily CLM_0639 IPR014445 Glutamine-dependent NAD(+) synthetase CLM_0639 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0639 IPR041856 Glutamine-dependent NAD+ synthetase, C-terminal CLM_0639 IPR003010 Carbon-nitrogen hydrolase CLM_0639 IPR022310 NAD/GMP synthase CLM_0639 IPR003694 NAD(+) synthetase CLM_0641 IPR018080 Band 7/stomatin-like, conserved site CLM_0641 IPR001972 Stomatin family CLM_0641 IPR001107 Band 7 domain CLM_0641 IPR036013 Band 7/SPFH domain superfamily CLM_0643 IPR000994 Peptidase M24 CLM_0643 IPR007865 Aminopeptidase P, N-terminal CLM_0643 IPR036005 Creatinase/aminopeptidase-like CLM_0643 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_0643 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CLM_0643 IPR001714 Peptidase M24, methionine aminopeptidase CLM_0650 IPR029058 Alpha/Beta hydrolase fold CLM_0650 IPR022742 Serine aminopeptidase, S33 CLM_0652 IPR025299 CstA, C-terminal domain CLM_0652 IPR003706 CstA, N-terminal domain CLM_0654 IPR033479 Double Cache domain 1 CLM_0654 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0654 IPR029151 Periplasmic sensor-like domain superfamily CLM_0654 IPR003660 HAMP domain CLM_0655 IPR003593 AAA+ ATPase domain CLM_0655 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLM_0655 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0655 IPR017871 ABC transporter, conserved site CLM_0655 IPR003439 ABC transporter-like CLM_0655 IPR032781 ABC-transporter extension domain CLM_0655 IPR032524 ABC transporter Uup, C-terminal CLM_0656 IPR001185 Large-conductance mechanosensitive channel CLM_0656 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CLM_0656 IPR036019 Gated mechanosensitive channel CLM_0660 IPR011130 SecA, preprotein cross-linking domain CLM_0660 IPR004027 SEC-C motif CLM_0660 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0660 IPR000185 Protein translocase subunit SecA CLM_0660 IPR020937 SecA conserved site CLM_0660 IPR014018 SecA motor DEAD CLM_0660 IPR011115 SecA DEAD-like, N-terminal CLM_0660 IPR036266 SecA, Wing/Scaffold superfamily CLM_0660 IPR036670 SecA, preprotein cross-linking domain superfamily CLM_0660 IPR011116 SecA Wing/Scaffold CLM_0661 IPR036390 Winged helix DNA-binding domain superfamily CLM_0661 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0661 IPR000524 Transcription regulator HTH, GntR CLM_0662 IPR003439 ABC transporter-like CLM_0662 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0662 IPR003593 AAA+ ATPase domain CLM_0665 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0665 IPR008995 Molybdate/tungstate binding, C-terminal CLM_0665 IPR017871 ABC transporter, conserved site CLM_0665 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit CLM_0665 IPR003439 ABC transporter-like CLM_0665 IPR013611 Transport-associated OB, type 2 CLM_0665 IPR003593 AAA+ ATPase domain CLM_0665 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA CLM_0666 IPR035906 MetI-like superfamily CLM_0666 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_0667 IPR035906 MetI-like superfamily CLM_0667 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_0670 IPR036458 Sodium:dicarboxylate symporter superfamily CLM_0670 IPR001991 Sodium:dicarboxylate symporter CLM_0670 IPR018107 Sodium:dicarboxylate symporter, conserved site CLM_0670 IPR023954 C4-dicarboxylate transport protein CLM_0674 IPR036366 PGBD superfamily CLM_0674 IPR036365 PGBD-like superfamily CLM_0674 IPR002477 Peptidoglycan binding-like CLM_0674 IPR017853 Glycoside hydrolase superfamily CLM_0674 IPR015020 Protein of unknown function DUF1906 CLM_0675 IPR024760 Helix-turn-helix, conjugative transposon-like CLM_0675 IPR014284 RNA polymerase sigma-70 like domain CLM_0675 IPR007630 RNA polymerase sigma-70 region 4 CLM_0675 IPR013325 RNA polymerase sigma factor, region 2 CLM_0675 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_0676 IPR024405 Prophage protein BhlA/UviB CLM_0680 IPR001646 Pentapeptide repeat CLM_0683 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0683 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0685 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CLM_0685 IPR019756 Peptidase S26A, signal peptidase I, serine active site CLM_0685 IPR036286 LexA/Signal peptidase-like superfamily CLM_0685 IPR000223 Peptidase S26A, signal peptidase I CLM_0685 IPR019758 Peptidase S26A, signal peptidase I, conserved site CLM_0685 IPR019533 Peptidase S26 CLM_0686 IPR001789 Signal transduction response regulator, receiver domain CLM_0686 IPR007492 LytTR DNA-binding domain CLM_0686 IPR011006 CheY-like superfamily CLM_0694 IPR003593 AAA+ ATPase domain CLM_0694 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_0694 IPR003439 ABC transporter-like CLM_0694 IPR039421 Type I protein exporter CLM_0694 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0694 IPR017871 ABC transporter, conserved site CLM_0694 IPR011917 ABC transporter, lipid A export, MsbA CLM_0694 IPR011527 ABC transporter type 1, transmembrane domain CLM_0698 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0698 IPR003593 AAA+ ATPase domain CLM_0698 IPR003439 ABC transporter-like CLM_0700 IPR003797 DegV CLM_0701 IPR022930 Protein of unknown function UPF0316 CLM_0701 IPR019264 Domain of unknown function DUF2179 CLM_0703 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLM_0703 IPR012160 Lipoteichoic acid synthase-like CLM_0703 IPR000917 Sulfatase, N-terminal CLM_0704 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_0704 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_0704 IPR003593 AAA+ ATPase domain CLM_0704 IPR035965 PAS domain superfamily CLM_0704 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_0704 IPR000014 PAS domain CLM_0704 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0704 IPR002197 DNA binding HTH domain, Fis-type CLM_0704 IPR009057 Homeobox-like domain superfamily CLM_0704 IPR029016 GAF-like domain superfamily CLM_0704 IPR025944 Sigma-54 interaction domain, conserved site CLM_0705 IPR008276 Concentrative nucleoside transporter CLM_0705 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_0705 IPR002668 Concentrative nucleoside transporter N-terminal domain CLM_0705 IPR011657 Concentrative nucleoside transporter C-terminal domain CLM_0705 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial CLM_0706 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CLM_0706 IPR012340 Nucleic acid-binding, OB-fold CLM_0706 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_0706 IPR004522 Asparagine-tRNA ligase CLM_0706 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_0706 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLM_0709 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0709 IPR020449 Transcription regulator HTH, AraC- type CLM_0709 IPR018062 HTH domain AraC-type, conserved site CLM_0709 IPR018060 DNA binding HTH domain, AraC-type CLM_0709 IPR009057 Homeobox-like domain superfamily CLM_0709 IPR029442 GyrI-like small molecule binding domain CLM_0709 IPR010499 Bacterial transcription activator, effector binding CLM_0714 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0714 IPR001789 Signal transduction response regulator, receiver domain CLM_0714 IPR011006 CheY-like superfamily CLM_0714 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0714 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0714 IPR039420 Transcriptional regulatory protein WalR-like CLM_0715 IPR025201 Sensor protein KdpD, transmembrane domain CLM_0715 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0715 IPR005467 Histidine kinase domain CLM_0715 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0715 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0715 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal CLM_0715 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0715 IPR029016 GAF-like domain superfamily CLM_0715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0715 IPR038318 KdpD, transmembrane domain superfamily CLM_0715 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0717 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily CLM_0717 IPR003709 Peptidase M15B CLM_0718 IPR039420 Transcriptional regulatory protein WalR-like CLM_0718 IPR001789 Signal transduction response regulator, receiver domain CLM_0718 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0718 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0718 IPR011006 CheY-like superfamily CLM_0718 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0719 IPR003660 HAMP domain CLM_0719 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0719 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0719 IPR035965 PAS domain superfamily CLM_0719 IPR000014 PAS domain CLM_0719 IPR041328 ResE, histidine kinase sensor domain CLM_0719 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0719 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0719 IPR005467 Histidine kinase domain CLM_0719 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0719 IPR013767 PAS fold CLM_0721 IPR001789 Signal transduction response regulator, receiver domain CLM_0721 IPR013972 YcbB domain CLM_0721 IPR011006 CheY-like superfamily CLM_0722 IPR035965 PAS domain superfamily CLM_0722 IPR013767 PAS fold CLM_0722 IPR000014 PAS domain CLM_0722 IPR041328 ResE, histidine kinase sensor domain CLM_0722 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0722 IPR005467 Histidine kinase domain CLM_0722 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0722 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0722 IPR003660 HAMP domain CLM_0722 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0722 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0723 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLM_0723 IPR013437 Probable peptidoglycan glycosyltransferase FtsW CLM_0723 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLM_0724 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0724 IPR003333 Mycolic acid cyclopropane synthase CLM_0726 IPR039421 Type I protein exporter CLM_0726 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0726 IPR003593 AAA+ ATPase domain CLM_0726 IPR011917 ABC transporter, lipid A export, MsbA CLM_0726 IPR017871 ABC transporter, conserved site CLM_0726 IPR003439 ABC transporter-like CLM_0726 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_0726 IPR011527 ABC transporter type 1, transmembrane domain CLM_0727 IPR018372 Chloramphenicol acetyltransferase, active site CLM_0727 IPR001707 Chloramphenicol acetyltransferase CLM_0727 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_0728 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_0728 IPR013571 Transcription regulator QacR, C-terminal CLM_0728 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_0728 IPR001647 DNA-binding HTH domain, TetR-type CLM_0728 IPR009057 Homeobox-like domain superfamily CLM_0730 IPR002547 tRNA-binding domain CLM_0730 IPR012340 Nucleic acid-binding, OB-fold CLM_0730 IPR008231 Probable chaperone CsaA CLM_0731 IPR009594 Transcription regulator HTH, AraC, N-terminal CLM_0731 IPR009057 Homeobox-like domain superfamily CLM_0731 IPR018060 DNA binding HTH domain, AraC-type CLM_0732 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0732 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0734 IPR007492 LytTR DNA-binding domain CLM_0734 IPR011006 CheY-like superfamily CLM_0734 IPR001789 Signal transduction response regulator, receiver domain CLM_0735 IPR003593 AAA+ ATPase domain CLM_0735 IPR003439 ABC transporter-like CLM_0735 IPR017871 ABC transporter, conserved site CLM_0735 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0737 IPR010158 Amidase, carbamoylase-type CLM_0737 IPR036264 Bacterial exopeptidase dimerisation domain CLM_0737 IPR002933 Peptidase M20 CLM_0737 IPR011650 Peptidase M20, dimerisation domain CLM_0738 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0738 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_0738 IPR004361 Glyoxalase I CLM_0738 IPR037523 Vicinal oxygen chelate (VOC) domain CLM_0738 IPR018146 Glyoxalase I, conserved site CLM_0739 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0739 IPR036063 Smr domain superfamily CLM_0739 IPR000432 DNA mismatch repair protein MutS, C-terminal CLM_0739 IPR007696 DNA mismatch repair protein MutS, core CLM_0739 IPR002625 Smr domain CLM_0739 IPR005747 Endonuclease MutS2 CLM_0739 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_0743 IPR007401 Protein of unknown function DUF454 CLM_0747 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0747 IPR036390 Winged helix DNA-binding domain superfamily CLM_0747 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0747 IPR000524 Transcription regulator HTH, GntR CLM_0747 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0747 IPR004839 Aminotransferase, class I/classII CLM_0749 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_0749 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_0749 IPR028622 ATP-dependent RNA helicase RhlE CLM_0749 IPR014014 RNA helicase, DEAD-box type, Q motif CLM_0749 IPR001650 Helicase, C-terminal CLM_0749 IPR011545 DEAD/DEAH box helicase domain CLM_0749 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0754 IPR005119 LysR, substrate-binding CLM_0754 IPR036390 Winged helix DNA-binding domain superfamily CLM_0754 IPR000847 Transcription regulator HTH, LysR CLM_0754 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0758 IPR003848 Domain of unknown function DUF218 CLM_0761 IPR000086 NUDIX hydrolase domain CLM_0761 IPR020084 NUDIX hydrolase, conserved site CLM_0761 IPR015797 NUDIX hydrolase-like domain superfamily CLM_0761 IPR020476 NUDIX hydrolase CLM_0761 IPR003561 Mutator MutT CLM_0762 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0764 IPR032466 Metal-dependent hydrolase CLM_0764 IPR001365 Adenosine/AMP deaminase domain CLM_0764 IPR006330 Adenosine/adenine deaminase CLM_0767 IPR036634 PRD domain superfamily CLM_0767 IPR001550 Transcription antiterminator, conserved site CLM_0767 IPR011608 PRD domain CLM_0767 IPR036650 CAT RNA-binding domain superfamily CLM_0767 IPR004341 CAT RNA-binding domain CLM_0768 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_0768 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_0768 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_0768 IPR003352 Phosphotransferase system, EIIC CLM_0768 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component CLM_0768 IPR011055 Duplicated hybrid motif CLM_0768 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_0768 IPR036878 Glucose permease domain IIB CLM_0769 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_0769 IPR004013 PHP domain CLM_0769 IPR016195 Polymerase/histidinol phosphatase-like CLM_0771 IPR000595 Cyclic nucleotide-binding domain CLM_0771 IPR014710 RmlC-like jelly roll fold CLM_0771 IPR036390 Winged helix DNA-binding domain superfamily CLM_0771 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0771 IPR012318 Crp-type HTH domain CLM_0771 IPR018335 Transcription regulator HTH, Crp-type, conserved site CLM_0771 IPR018490 Cyclic nucleotide-binding-like CLM_0772 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0772 IPR001279 Metallo-beta-lactamase CLM_0772 IPR024934 Rubredoxin-like domain CLM_0772 IPR016440 Rubredoxin-oxygen oxidoreductase CLM_0772 IPR024935 Rubredoxin domain CLM_0772 IPR029039 Flavoprotein-like superfamily CLM_0772 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin CLM_0772 IPR008254 Flavodoxin/nitric oxide synthase CLM_0773 IPR012312 Haemerythrin-like CLM_0773 IPR019903 Repair of iron centres family CLM_0776 IPR004445 Sodium/glutamate symport carrier protein GltS CLM_0781 IPR001851 ABC transporter, permease CLM_0782 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0782 IPR015856 ABC transporter, CbiO/EcfA subunit CLM_0782 IPR017871 ABC transporter, conserved site CLM_0782 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 CLM_0782 IPR003439 ABC transporter-like CLM_0782 IPR003593 AAA+ ATPase domain CLM_0786 IPR011009 Protein kinase-like domain superfamily CLM_0786 IPR017441 Protein kinase, ATP binding site CLM_0789 IPR004653 tRNA-dihydrouridine(20/20a) synthase CLM_0789 IPR035587 DUS-like, FMN-binding domain CLM_0789 IPR018517 tRNA-dihydrouridine synthase, conserved site CLM_0789 IPR013785 Aldolase-type TIM barrel CLM_0789 IPR001269 tRNA-dihydrouridine synthase CLM_0790 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CLM_0790 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CLM_0790 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CLM_0790 IPR023459 Transcription elongation factor GreA/GreB family CLM_0790 IPR006359 Transcription elongation factor GreA CLM_0790 IPR028624 Transcription elongation factor GreA/GreB CLM_0790 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CLM_0790 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CLM_0792 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily CLM_0792 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain CLM_0792 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLM_0792 IPR004546 Restriction endonuclease, type I, HsdM CLM_0792 IPR003356 DNA methylase, adenine-specific CLM_0792 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0795 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_0795 IPR013670 EcoEI R protein C-terminal domain CLM_0795 IPR006935 Helicase/UvrB, N-terminal CLM_0795 IPR001650 Helicase, C-terminal CLM_0795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0795 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal CLM_0797 IPR010499 Bacterial transcription activator, effector binding CLM_0797 IPR029442 GyrI-like small molecule binding domain CLM_0797 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0798 IPR012338 Beta-lactamase/transpeptidase-like CLM_0798 IPR000871 Beta-lactamase, class-A CLM_0798 IPR023650 Beta-lactamase, class-A active site CLM_0799 IPR005650 BlaI transcriptional regulatory family CLM_0799 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0799 IPR036390 Winged helix DNA-binding domain superfamily CLM_0800 IPR008756 Peptidase M56 CLM_0800 IPR001460 Penicillin-binding protein, transpeptidase CLM_0800 IPR012338 Beta-lactamase/transpeptidase-like CLM_0804 IPR037294 ABC transporter, BtuC-like CLM_0804 IPR000522 ABC transporter, permease protein, BtuC-like CLM_0805 IPR037294 ABC transporter, BtuC-like CLM_0805 IPR000522 ABC transporter, permease protein, BtuC-like CLM_0806 IPR017871 ABC transporter, conserved site CLM_0806 IPR003439 ABC transporter-like CLM_0806 IPR003593 AAA+ ATPase domain CLM_0806 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0807 IPR000392 NifH/frxC family CLM_0807 IPR005977 Nitrogenase iron protein NifH CLM_0807 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0807 IPR030655 NifH/chlL conserved site CLM_0808 IPR000318 Nitrogenase component 1, conserved site CLM_0808 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE CLM_0808 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLM_0808 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_0808 IPR000510 Nitrogenase/oxidoreductase, component 1 CLM_0810 IPR029151 Periplasmic sensor-like domain superfamily CLM_0810 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_0810 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0810 IPR003660 HAMP domain CLM_0810 IPR033479 Double Cache domain 1 CLM_0815 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CLM_0815 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain CLM_0815 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CLM_0815 IPR006222 Aminomethyltransferase, folate-binding domain CLM_0815 IPR022903 Glycine cleavage system T protein, bacteria CLM_0815 IPR006223 Glycine cleavage system T protein CLM_0815 IPR028896 Aminomethyltransferase-like CLM_0816 IPR002930 Glycine cleavage system H-protein CLM_0816 IPR033753 Glycine cleavage system H-protein/Simiate CLM_0816 IPR017453 Glycine cleavage system H-protein, subgroup CLM_0816 IPR011053 Single hybrid motif CLM_0816 IPR000089 Biotin/lipoyl attachment CLM_0816 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CLM_0817 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 CLM_0817 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0817 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0817 IPR020581 Glycine cleavage system P protein CLM_0817 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0818 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 CLM_0818 IPR020581 Glycine cleavage system P protein CLM_0818 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0818 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0818 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0819 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CLM_0819 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CLM_0819 IPR006258 Dihydrolipoamide dehydrogenase CLM_0819 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0819 IPR023753 FAD/NAD(P)-binding domain CLM_0819 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLM_0819 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_0820 IPR019491 Lipoate protein ligase, C-terminal CLM_0820 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLM_0820 IPR004562 Lipoyltransferase/lipoate-protein ligase CLM_0824 IPR001207 Transposase, mutator type CLM_0825 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0825 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0825 IPR011006 CheY-like superfamily CLM_0825 IPR039420 Transcriptional regulatory protein WalR-like CLM_0825 IPR001789 Signal transduction response regulator, receiver domain CLM_0825 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0826 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0826 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0826 IPR005467 Histidine kinase domain CLM_0826 IPR000014 PAS domain CLM_0826 IPR035965 PAS domain superfamily CLM_0826 IPR013767 PAS fold CLM_0826 IPR031967 PhoR, single Cache-like domain CLM_0826 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0826 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0826 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0827 IPR003593 AAA+ ATPase domain CLM_0827 IPR003838 ABC transporter permease protein domain CLM_0827 IPR003439 ABC transporter-like CLM_0827 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0827 IPR017871 ABC transporter, conserved site CLM_0827 IPR017911 ABC transporter, macrolide export, ATP-binding domain CLM_0827 IPR025857 MacB-like periplasmic core domain CLM_0829 IPR000835 MarR-type HTH domain CLM_0829 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0829 IPR036390 Winged helix DNA-binding domain superfamily CLM_0834 IPR011788 Zn(II)-responsive transcriptional regulator CLM_0834 IPR000551 MerR-type HTH domain CLM_0834 IPR009061 Putative DNA-binding domain superfamily CLM_0835 IPR015851 ABC transporter, NodI CLM_0835 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0835 IPR005978 Nodulation ABC transporter, NodI CLM_0835 IPR017871 ABC transporter, conserved site CLM_0835 IPR003593 AAA+ ATPase domain CLM_0835 IPR003439 ABC transporter-like CLM_0837 IPR000620 EamA domain CLM_0838 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0838 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0842 IPR018062 HTH domain AraC-type, conserved site CLM_0842 IPR018060 DNA binding HTH domain, AraC-type CLM_0842 IPR009057 Homeobox-like domain superfamily CLM_0846 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0846 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0849 IPR009061 Putative DNA-binding domain superfamily CLM_0849 IPR011788 Zn(II)-responsive transcriptional regulator CLM_0849 IPR000551 MerR-type HTH domain CLM_0851 IPR041552 UvrA DNA-binding domain CLM_0851 IPR004602 UvrABC system subunit A CLM_0851 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0851 IPR017871 ABC transporter, conserved site CLM_0851 IPR003439 ABC transporter-like CLM_0851 IPR041102 UvrA, interaction domain CLM_0852 IPR027785 UvrD-like helicase C-terminal domain CLM_0852 IPR014016 UvrD-like helicase, ATP-binding domain CLM_0852 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0852 IPR000212 DNA helicase, UvrD/REP type CLM_0854 IPR020449 Transcription regulator HTH, AraC- type CLM_0854 IPR018062 HTH domain AraC-type, conserved site CLM_0854 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0854 IPR029442 GyrI-like small molecule binding domain CLM_0854 IPR009057 Homeobox-like domain superfamily CLM_0854 IPR018060 DNA binding HTH domain, AraC-type CLM_0854 IPR010499 Bacterial transcription activator, effector binding CLM_0856 IPR016039 Thiolase-like CLM_0856 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_0856 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CLM_0856 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CLM_0857 IPR000727 Target SNARE coiled-coil homology domain CLM_0857 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0857 IPR003660 HAMP domain CLM_0857 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_0857 IPR004090 Chemotaxis methyl-accepting receptor CLM_0860 IPR003593 AAA+ ATPase domain CLM_0860 IPR032781 ABC-transporter extension domain CLM_0860 IPR003439 ABC transporter-like CLM_0860 IPR017871 ABC transporter, conserved site CLM_0860 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0866 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_0866 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CLM_0866 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_0868 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0868 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0868 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0868 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLM_0869 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0869 IPR023576 UbiE/COQ5 methyltransferase, conserved site CLM_0869 IPR004033 UbiE/COQ5 methyltransferase CLM_0871 IPR001223 Glycoside hydrolase family 18, catalytic domain CLM_0871 IPR013783 Immunoglobulin-like fold CLM_0871 IPR029070 Chitinase insertion domain superfamily CLM_0871 IPR009470 Chitinase, C-terminal CLM_0871 IPR036573 Carbohydrate-binding module superfamily 5/12 CLM_0871 IPR017853 Glycoside hydrolase superfamily CLM_0871 IPR003610 Carbohydrate-binding module family 5/12 CLM_0871 IPR011583 Chitinase II CLM_0872 IPR013216 Methyltransferase type 11 CLM_0872 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0874 IPR020449 Transcription regulator HTH, AraC- type CLM_0874 IPR010499 Bacterial transcription activator, effector binding CLM_0874 IPR029442 GyrI-like small molecule binding domain CLM_0874 IPR009057 Homeobox-like domain superfamily CLM_0874 IPR018060 DNA binding HTH domain, AraC-type CLM_0874 IPR018062 HTH domain AraC-type, conserved site CLM_0874 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0896 IPR000395 Botulinum/Tetanus toxin, catalytic chain CLM_0896 IPR036248 Clostridium neurotoxin, translocation domain CLM_0896 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_0896 IPR013677 Nontoxic nonhaemagglutinin C-terminal CLM_0896 IPR012928 Clostridium neurotoxin, receptor binding N-terminal CLM_0897 IPR036248 Clostridium neurotoxin, translocation domain CLM_0897 IPR011065 Kunitz inhibitor STI-like superfamily CLM_0897 IPR012500 Clostridium neurotoxin, translocation CLM_0897 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_0897 IPR000395 Botulinum/Tetanus toxin, catalytic chain CLM_0897 IPR013104 Clostridium neurotoxin, receptor-binding C-terminal CLM_0897 IPR012928 Clostridium neurotoxin, receptor binding N-terminal CLM_0899 IPR017853 Glycoside hydrolase superfamily CLM_0899 IPR003646 SH3-like domain, bacterial-type CLM_0899 IPR008270 Glycoside hydrolase, family 25, active site CLM_0899 IPR002053 Glycoside hydrolase, family 25 CLM_0899 IPR018077 Glycoside hydrolase, family 25 subgroup CLM_0905 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0905 IPR036390 Winged helix DNA-binding domain superfamily CLM_0905 IPR018334 ArsR-type transcription regulator, HTH motif CLM_0905 IPR011991 ArsR-like helix-turn-helix domain CLM_0905 IPR001845 HTH ArsR-type DNA-binding domain CLM_0906 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD CLM_0906 IPR036249 Thioredoxin-like superfamily CLM_0907 IPR025723 Anion-transporting ATPase-like domain CLM_0907 IPR003593 AAA+ ATPase domain CLM_0907 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0907 IPR027541 Arsenical pump-driving ATPase CLM_0907 IPR016300 Arsenical pump ATPase, ArsA/GET3 CLM_0909 IPR038770 Sodium/solute symporter superfamily CLM_0909 IPR004706 Arsenical-resistance protein Acr3 CLM_0909 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 CLM_0912 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0912 IPR025714 Methyltransferase domain CLM_0912 IPR026669 Arsenite methyltransferase-like CLM_0915 IPR003593 AAA+ ATPase domain CLM_0915 IPR003439 ABC transporter-like CLM_0915 IPR017871 ABC transporter, conserved site CLM_0915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0920 IPR006059 Bacterial extracellular solute-binding protein CLM_0920 IPR030901 Thiaminase-1 CLM_0921 IPR034291 Thiamine phosphate synthase CLM_0921 IPR022998 Thiamine phosphate synthase/TenI CLM_0921 IPR029056 Ribokinase-like CLM_0921 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CLM_0921 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CLM_0921 IPR036206 Thiamin phosphate synthase superfamily CLM_0921 IPR013785 Aldolase-type TIM barrel CLM_0924 IPR017871 ABC transporter, conserved site CLM_0924 IPR003439 ABC transporter-like CLM_0924 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0924 IPR003593 AAA+ ATPase domain CLM_0926 IPR011006 CheY-like superfamily CLM_0926 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0926 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0926 IPR001789 Signal transduction response regulator, receiver domain CLM_0926 IPR039420 Transcriptional regulatory protein WalR-like CLM_0926 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0927 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0927 IPR003439 ABC transporter-like CLM_0927 IPR017871 ABC transporter, conserved site CLM_0927 IPR003593 AAA+ ATPase domain CLM_0929 IPR010499 Bacterial transcription activator, effector binding CLM_0929 IPR009057 Homeobox-like domain superfamily CLM_0929 IPR018060 DNA binding HTH domain, AraC-type CLM_0929 IPR018062 HTH domain AraC-type, conserved site CLM_0929 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0929 IPR020449 Transcription regulator HTH, AraC- type CLM_0929 IPR029442 GyrI-like small molecule binding domain CLM_0930 IPR000014 PAS domain CLM_0930 IPR029151 Periplasmic sensor-like domain superfamily CLM_0930 IPR003660 HAMP domain CLM_0930 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0930 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0930 IPR005467 Histidine kinase domain CLM_0930 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0930 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0930 IPR000700 PAS-associated, C-terminal CLM_0930 IPR035965 PAS domain superfamily CLM_0930 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0933 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0933 IPR025857 MacB-like periplasmic core domain CLM_0933 IPR003593 AAA+ ATPase domain CLM_0933 IPR017911 ABC transporter, macrolide export, ATP-binding domain CLM_0933 IPR017871 ABC transporter, conserved site CLM_0933 IPR003439 ABC transporter-like CLM_0933 IPR003838 ABC transporter permease protein domain CLM_0936 IPR039420 Transcriptional regulatory protein WalR-like CLM_0936 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0936 IPR011006 CheY-like superfamily CLM_0936 IPR001789 Signal transduction response regulator, receiver domain CLM_0936 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_0936 IPR016032 Signal transduction response regulator, C-terminal effector CLM_0937 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_0937 IPR005467 Histidine kinase domain CLM_0937 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0937 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0937 IPR003660 HAMP domain CLM_0937 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_0937 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_0939 IPR012610 Small acid-soluble spore protein, SspH CLM_0942 IPR022664 Dihydrodipicolinate reductase, conserved site CLM_0942 IPR022663 Dihydrodipicolinate reductase, C-terminal CLM_0942 IPR023940 Dihydrodipicolinate reductase CLM_0942 IPR036291 NAD(P)-binding domain superfamily CLM_0942 IPR000846 Dihydrodipicolinate reductase, N-terminal CLM_0943 IPR036873 Rhodanese-like domain superfamily CLM_0943 IPR001763 Rhodanese-like domain CLM_0947 IPR001466 Beta-lactamase-related CLM_0947 IPR012338 Beta-lactamase/transpeptidase-like CLM_0948 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0948 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0949 IPR002104 Integrase, catalytic domain CLM_0949 IPR013762 Integrase-like, catalytic domain superfamily CLM_0949 IPR010998 Integrase/recombinase, N-terminal CLM_0949 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_0949 IPR004107 Integrase, SAM-like, N-terminal CLM_0950 IPR037523 Vicinal oxygen chelate (VOC) domain CLM_0950 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_0950 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0953 IPR032466 Metal-dependent hydrolase CLM_0953 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_0953 IPR005920 Imidazolonepropionase CLM_0953 IPR006680 Amidohydrolase-related CLM_0954 IPR004685 Branched-chain amino acid transport system II carrier protein CLM_0955 IPR004685 Branched-chain amino acid transport system II carrier protein CLM_0956 IPR029151 Periplasmic sensor-like domain superfamily CLM_0956 IPR033479 Double Cache domain 1 CLM_0956 IPR003660 HAMP domain CLM_0956 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0958 IPR041069 FeoB, cytosolic helical domain CLM_0958 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0958 IPR011640 Ferrous iron transport protein B, C-terminal CLM_0958 IPR003373 Ferrous iron transport protein B CLM_0958 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CLM_0958 IPR006073 GTP binding domain CLM_0958 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_0959 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_0959 IPR006073 GTP binding domain CLM_0959 IPR011640 Ferrous iron transport protein B, C-terminal CLM_0959 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0959 IPR041069 FeoB, cytosolic helical domain CLM_0959 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CLM_0959 IPR003373 Ferrous iron transport protein B CLM_0961 IPR013078 Histidine phosphatase superfamily, clade-1 CLM_0961 IPR029033 Histidine phosphatase superfamily CLM_0962 IPR007391 Vancomycin resistance VanW CLM_0963 IPR003805 Adenosylcobinamide-GDP ribazoletransferase CLM_0969 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily CLM_0969 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family CLM_0970 IPR006390 Dihydropteroate synthase CLM_0970 IPR011005 Dihydropteroate synthase-like CLM_0970 IPR000489 Pterin-binding domain CLM_0972 IPR036117 DhaL domain superfamily CLM_0972 IPR004007 DhaL domain CLM_0972 IPR019986 DAK2 domain-containing protein YloV CLM_0972 IPR033470 Uncharacterised protein, DhaK domain CLM_0973 IPR006156 Dihydroneopterin aldolase CLM_0973 IPR006157 Dihydroneopterin aldolase/epimerase domain CLM_0973 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK CLM_0973 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily CLM_0974 IPR002068 Alpha crystallin/Hsp20 domain CLM_0974 IPR031107 Small heat shock protein HSP20 CLM_0974 IPR008978 HSP20-like chaperone CLM_0975 IPR000551 MerR-type HTH domain CLM_0975 IPR037392 YfmP, Helix-Turn-Helix DNA binding domain CLM_0975 IPR009061 Putative DNA-binding domain superfamily CLM_0976 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0976 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0976 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0976 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_0977 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_0977 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_0977 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_0977 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0979 IPR007627 RNA polymerase sigma-70 region 2 CLM_0979 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLM_0979 IPR013325 RNA polymerase sigma factor, region 2 CLM_0979 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLM_0979 IPR039425 RNA polymerase sigma-70 like CLM_0979 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0979 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_0979 IPR014284 RNA polymerase sigma-70 like domain CLM_0984 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0984 IPR017871 ABC transporter, conserved site CLM_0984 IPR003439 ABC transporter-like CLM_0984 IPR003593 AAA+ ATPase domain CLM_0986 IPR001387 Cro/C1-type helix-turn-helix domain CLM_0986 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_0988 IPR029058 Alpha/Beta hydrolase fold CLM_0988 IPR000073 Alpha/beta hydrolase fold-1 CLM_0988 IPR000639 Epoxide hydrolase-like CLM_0988 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal CLM_0997 IPR016181 Acyl-CoA N-acyltransferase CLM_0997 IPR007344 GrpB/Dephospho-CoA kinase CLM_0997 IPR000182 GNAT domain CLM_0999 IPR012093 Pirin CLM_0999 IPR014710 RmlC-like jelly roll fold CLM_0999 IPR011051 RmlC-like cupin domain superfamily CLM_0999 IPR003829 Pirin, N-terminal domain CLM_0999 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain CLM_1000 IPR002577 Helix-turn-helix, HxlR type CLM_1000 IPR036390 Winged helix DNA-binding domain superfamily CLM_1000 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1001 IPR029479 Nitroreductase CLM_1001 IPR000415 Nitroreductase-like CLM_1002 IPR029058 Alpha/Beta hydrolase fold CLM_1003 IPR011051 RmlC-like cupin domain superfamily CLM_1003 IPR014710 RmlC-like jelly roll fold CLM_1003 IPR006045 Cupin 1 CLM_1003 IPR017774 Bicupin, oxalate decarboxylase/oxidase CLM_1004 IPR031100 LOG family CLM_1004 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CLM_1006 IPR000847 Transcription regulator HTH, LysR CLM_1006 IPR005119 LysR, substrate-binding CLM_1006 IPR036390 Winged helix DNA-binding domain superfamily CLM_1006 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1007 IPR025777 GMP synthetase ATP pyrophosphatase domain CLM_1007 IPR029062 Class I glutamine amidotransferase-like CLM_1007 IPR000182 GNAT domain CLM_1007 IPR001674 GMP synthase, C-terminal CLM_1007 IPR017926 Glutamine amidotransferase CLM_1007 IPR011257 DNA glycosylase CLM_1007 IPR005019 Methyladenine glycosylase CLM_1007 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1007 IPR016181 Acyl-CoA N-acyltransferase CLM_1010 IPR036821 Peptide deformylase superfamily CLM_1010 IPR023635 Peptide deformylase CLM_1011 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1011 IPR036390 Winged helix DNA-binding domain superfamily CLM_1011 IPR004839 Aminotransferase, class I/classII CLM_1011 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1011 IPR000524 Transcription regulator HTH, GntR CLM_1011 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1012 IPR000415 Nitroreductase-like CLM_1012 IPR029479 Nitroreductase CLM_1013 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1013 IPR036390 Winged helix DNA-binding domain superfamily CLM_1013 IPR002577 Helix-turn-helix, HxlR type CLM_1017 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1017 IPR009057 Homeobox-like domain superfamily CLM_1017 IPR020449 Transcription regulator HTH, AraC- type CLM_1017 IPR010499 Bacterial transcription activator, effector binding CLM_1017 IPR029442 GyrI-like small molecule binding domain CLM_1017 IPR018060 DNA binding HTH domain, AraC-type CLM_1017 IPR018062 HTH domain AraC-type, conserved site CLM_1020 IPR036878 Glucose permease domain IIB CLM_1020 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_1020 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_1020 IPR003352 Phosphotransferase system, EIIC CLM_1020 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_1020 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_1020 IPR011055 Duplicated hybrid motif CLM_1020 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component CLM_1021 IPR018120 Glycoside hydrolase family 1, active site CLM_1021 IPR017853 Glycoside hydrolase superfamily CLM_1021 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLM_1021 IPR001360 Glycoside hydrolase family 1 CLM_1023 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CLM_1023 IPR000715 Glycosyl transferase, family 4 CLM_1023 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CLM_1026 IPR018357 Hexapeptide transferase, conserved site CLM_1026 IPR011004 Trimeric LpxA-like superfamily CLM_1026 IPR001451 Hexapeptide repeat CLM_1029 IPR009057 Homeobox-like domain superfamily CLM_1029 IPR018060 DNA binding HTH domain, AraC-type CLM_1029 IPR008979 Galactose-binding-like domain superfamily CLM_1038 IPR027275 PRC-barrel domain CLM_1038 IPR019060 Domain of unknown function DUF2382 CLM_1038 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal CLM_1038 IPR011033 PRC-barrel-like superfamily CLM_1039 IPR007344 GrpB/Dephospho-CoA kinase CLM_1040 IPR036779 LysM domain superfamily CLM_1040 IPR018392 LysM domain CLM_1040 IPR005490 L,D-transpeptidase catalytic domain CLM_1040 IPR038063 L,D-transpeptidase catalytic domain-like CLM_1048 IPR025857 MacB-like periplasmic core domain CLM_1048 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1048 IPR017911 ABC transporter, macrolide export, ATP-binding domain CLM_1048 IPR017871 ABC transporter, conserved site CLM_1048 IPR003439 ABC transporter-like CLM_1048 IPR003838 ABC transporter permease protein domain CLM_1048 IPR003593 AAA+ ATPase domain CLM_1049 IPR011006 CheY-like superfamily CLM_1049 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1049 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1049 IPR039420 Transcriptional regulatory protein WalR-like CLM_1049 IPR001789 Signal transduction response regulator, receiver domain CLM_1050 IPR000014 PAS domain CLM_1050 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1050 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1050 IPR013767 PAS fold CLM_1050 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1050 IPR031967 PhoR, single Cache-like domain CLM_1050 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1050 IPR005467 Histidine kinase domain CLM_1050 IPR035965 PAS domain superfamily CLM_1050 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1051 IPR005786 Branched-chain amino acid aminotransferase II CLM_1051 IPR033939 Branched-chain aminotransferase CLM_1051 IPR018300 Aminotransferase, class IV, conserved site CLM_1051 IPR001544 Aminotransferase class IV CLM_1051 IPR036038 Aminotransferase-like, PLP-dependent enzymes CLM_1052 IPR003784 BioY protein CLM_1054 IPR016181 Acyl-CoA N-acyltransferase CLM_1054 IPR000182 GNAT domain CLM_1055 IPR039418 LexA-like CLM_1055 IPR036390 Winged helix DNA-binding domain superfamily CLM_1055 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1055 IPR015927 Peptidase S24/S26A/S26B/S26C CLM_1055 IPR006197 Peptidase S24, LexA-like CLM_1055 IPR036286 LexA/Signal peptidase-like superfamily CLM_1055 IPR006199 LexA repressor, DNA-binding domain CLM_1055 IPR006200 Transcription regulator LexA CLM_1058 IPR012925 TipAS antibiotic-recognition domain CLM_1058 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CLM_1058 IPR009061 Putative DNA-binding domain superfamily CLM_1058 IPR000551 MerR-type HTH domain CLM_1061 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1061 IPR029062 Class I glutamine amidotransferase-like CLM_1061 IPR017929 CobB/CobQ glutamine amidotransferase CLM_1061 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 CLM_1061 IPR004459 Cobyric acid synthase CobQ CLM_1061 IPR011698 CobB/CobQ-like glutamine amidotransferase CLM_1062 IPR004485 Cobalamin biosynthesis CobD/CbiB CLM_1063 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1063 IPR004839 Aminotransferase, class I/classII CLM_1063 IPR005860 L-threonine-O-3-phosphate decarboxylase CLM_1063 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1063 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1064 IPR018024 Cobalamin (vitamin B12) transport protein CbiM CLM_1064 IPR002751 Metal transport protein CbiM/NikMN CLM_1065 IPR003705 Cobalt transport protein CbiN CLM_1067 IPR000878 Tetrapyrrole methylase CLM_1067 IPR037115 Sirohaem synthase, dimerisation domain superfamily CLM_1067 IPR036291 NAD(P)-binding domain superfamily CLM_1067 IPR006366 Uroporphyrin-III C-methyltransferase CLM_1067 IPR014776 Tetrapyrrole methylase, subdomain 2 CLM_1067 IPR006367 Sirohaem synthase, N-terminal CLM_1067 IPR028281 Siroheme synthase, central domain CLM_1067 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CLM_1067 IPR012409 Sirohaem synthase CLM_1067 IPR035996 Tetrapyrrole methylase superfamily CLM_1067 IPR019478 Sirohaem synthase, dimerisation domain CLM_1067 IPR014777 Tetrapyrrole methylase, subdomain 1 CLM_1068 IPR000860 Porphobilinogen deaminase CLM_1068 IPR022417 Porphobilinogen deaminase, N-terminal CLM_1068 IPR022418 Porphobilinogen deaminase, C-terminal CLM_1068 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily CLM_1071 IPR001731 Delta-aminolevulinic acid dehydratase CLM_1071 IPR030656 Delta-aminolevulinic acid dehydratase, active site CLM_1071 IPR013785 Aldolase-type TIM barrel CLM_1072 IPR017929 CobB/CobQ glutamine amidotransferase CLM_1072 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_1072 IPR029062 Class I glutamine amidotransferase-like CLM_1072 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA CLM_1072 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1072 IPR011698 CobB/CobQ-like glutamine amidotransferase CLM_1073 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily CLM_1073 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC CLM_1077 IPR001279 Metallo-beta-lactamase CLM_1077 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1078 IPR017871 ABC transporter, conserved site CLM_1078 IPR003593 AAA+ ATPase domain CLM_1078 IPR015856 ABC transporter, CbiO/EcfA subunit CLM_1078 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 CLM_1078 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1078 IPR003439 ABC transporter-like CLM_1079 IPR016181 Acyl-CoA N-acyltransferase CLM_1079 IPR000182 GNAT domain CLM_1080 IPR003812 Fido domain CLM_1080 IPR040198 Fido domain-containing protein CLM_1080 IPR041657 Helix-turn-helix domain, group 17 CLM_1080 IPR010093 SinI-like, DNA-binding domain CLM_1080 IPR036597 Fido-like domain superfamily CLM_1081 IPR026021 Putative NAD(P)H nitroreductase YdjA-like CLM_1081 IPR000415 Nitroreductase-like CLM_1081 IPR029479 Nitroreductase CLM_1085 IPR007344 GrpB/Dephospho-CoA kinase CLM_1085 IPR016181 Acyl-CoA N-acyltransferase CLM_1085 IPR000182 GNAT domain CLM_1086 IPR036074 CbiD superfamily CLM_1086 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD CLM_1090 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1090 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit CLM_1090 IPR007848 Methyltransferase small domain CLM_1097 IPR014776 Tetrapyrrole methylase, subdomain 2 CLM_1097 IPR014777 Tetrapyrrole methylase, subdomain 1 CLM_1097 IPR036291 NAD(P)-binding domain superfamily CLM_1097 IPR035996 Tetrapyrrole methylase superfamily CLM_1097 IPR000878 Tetrapyrrole methylase CLM_1097 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CLM_1097 IPR006367 Sirohaem synthase, N-terminal CLM_1097 IPR019478 Sirohaem synthase, dimerisation domain CLM_1097 IPR006366 Uroporphyrin-III C-methyltransferase CLM_1097 IPR012409 Sirohaem synthase CLM_1097 IPR028281 Siroheme synthase, central domain CLM_1097 IPR037115 Sirohaem synthase, dimerisation domain superfamily CLM_1098 IPR014776 Tetrapyrrole methylase, subdomain 2 CLM_1098 IPR014777 Tetrapyrrole methylase, subdomain 1 CLM_1098 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase CLM_1098 IPR035996 Tetrapyrrole methylase superfamily CLM_1098 IPR000878 Tetrapyrrole methylase CLM_1098 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CLM_1099 IPR036518 CobE/GbiG C-terminal domain superfamily CLM_1099 IPR002750 CobE/GbiG C-terminal domain CLM_1099 IPR021744 Cobalamin synthesis G, N-terminal CLM_1099 IPR038029 GbiG N-terminal domain superfamily CLM_1099 IPR021745 Cobalamin biosynthesis central region CLM_1100 IPR000878 Tetrapyrrole methylase CLM_1100 IPR035996 Tetrapyrrole methylase superfamily CLM_1100 IPR014777 Tetrapyrrole methylase, subdomain 1 CLM_1100 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CLM_1100 IPR014776 Tetrapyrrole methylase, subdomain 2 CLM_1100 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CLM_1100 IPR006363 Precorrin-3B C17-methyltransferase domain CLM_1101 IPR003723 Precorrin-6x reductase CLM_1103 IPR010388 Anaerobic cobalt chelatase CLM_1104 IPR006204 GHMP kinase N-terminal domain CLM_1104 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related CLM_1104 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1104 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1105 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1105 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain CLM_1105 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR CLM_1107 IPR023271 Aquaporin-like CLM_1107 IPR000292 Formate/nitrite transporter CLM_1107 IPR024002 Formate/nitrite transporter, conserved site CLM_1108 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1108 IPR009051 Alpha-helical ferredoxin CLM_1108 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1108 IPR014259 Sulphite reductase, subunit A CLM_1109 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLM_1109 IPR017938 Riboflavin synthase-like beta-barrel CLM_1109 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_1109 IPR014260 Sulphite reductase, subunit B CLM_1109 IPR017927 FAD-binding domain, ferredoxin reductase-type CLM_1109 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_1109 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit CLM_1110 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CLM_1110 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CLM_1110 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1110 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1110 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CLM_1110 IPR014261 Sulphite reductase, subunit C CLM_1110 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CLM_1114 IPR003439 ABC transporter-like CLM_1114 IPR017871 ABC transporter, conserved site CLM_1114 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1114 IPR015851 ABC transporter, NodI CLM_1114 IPR005978 Nodulation ABC transporter, NodI CLM_1114 IPR003593 AAA+ ATPase domain CLM_1116 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1116 IPR011006 CheY-like superfamily CLM_1116 IPR039420 Transcriptional regulatory protein WalR-like CLM_1116 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1116 IPR001789 Signal transduction response regulator, receiver domain CLM_1116 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1117 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1117 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1117 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1117 IPR005467 Histidine kinase domain CLM_1117 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1117 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1118 IPR017871 ABC transporter, conserved site CLM_1118 IPR003439 ABC transporter-like CLM_1118 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1118 IPR003593 AAA+ ATPase domain CLM_1119 IPR000522 ABC transporter, permease protein, BtuC-like CLM_1119 IPR037294 ABC transporter, BtuC-like CLM_1120 IPR002491 ABC transporter periplasmic binding domain CLM_1120 IPR023544 ABC transporter, vitamin B12-binding protein CLM_1123 IPR041492 Haloacid dehalogenase-like hydrolase CLM_1123 IPR006439 HAD hydrolase, subfamily IA CLM_1123 IPR036412 HAD-like superfamily CLM_1123 IPR023214 HAD superfamily CLM_1123 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_1123 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB CLM_1126 IPR005119 LysR, substrate-binding CLM_1126 IPR017685 HTH-type transcriptional regulator ArgP CLM_1126 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1126 IPR036390 Winged helix DNA-binding domain superfamily CLM_1126 IPR000847 Transcription regulator HTH, LysR CLM_1126 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria CLM_1131 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 CLM_1131 IPR004006 DhaK domain CLM_1132 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_1132 IPR016205 Glycerol dehydrogenase CLM_1132 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_1133 IPR014710 RmlC-like jelly roll fold CLM_1133 IPR011051 RmlC-like cupin domain superfamily CLM_1133 IPR018060 DNA binding HTH domain, AraC-type CLM_1133 IPR018062 HTH domain AraC-type, conserved site CLM_1133 IPR009057 Homeobox-like domain superfamily CLM_1133 IPR013096 Cupin 2, conserved barrel CLM_1134 IPR016181 Acyl-CoA N-acyltransferase CLM_1134 IPR000182 GNAT domain CLM_1138 IPR018170 Aldo/keto reductase, conserved site CLM_1138 IPR020471 Aldo/keto reductase CLM_1138 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1138 IPR023210 NADP-dependent oxidoreductase domain CLM_1139 IPR007076 TfoX, N-terminal CLM_1144 IPR000064 Endopeptidase, NLPC/P60 domain CLM_1144 IPR038765 Papain-like cysteine peptidase superfamily CLM_1145 IPR028893 Adenosine deaminase CLM_1145 IPR006330 Adenosine/adenine deaminase CLM_1145 IPR032466 Metal-dependent hydrolase CLM_1145 IPR001365 Adenosine/AMP deaminase domain CLM_1146 IPR013525 ABC-2 type transporter CLM_1146 IPR017501 Phage infection protein, YhgE, C-terminal CLM_1146 IPR017500 Phage infection protein, YhgE, N-terminal CLM_1147 IPR017500 Phage infection protein, YhgE, N-terminal CLM_1147 IPR017501 Phage infection protein, YhgE, C-terminal CLM_1147 IPR013525 ABC-2 type transporter CLM_1150 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1150 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CLM_1150 IPR004589 DNA helicase, ATP-dependent, RecQ type CLM_1150 IPR002121 HRDC domain CLM_1150 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1150 IPR018982 RQC domain CLM_1150 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial CLM_1150 IPR010997 HRDC-like superfamily CLM_1150 IPR011545 DEAD/DEAH box helicase domain CLM_1150 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1150 IPR001650 Helicase, C-terminal CLM_1150 IPR036390 Winged helix DNA-binding domain superfamily CLM_1151 IPR009078 Ferritin-like superfamily CLM_1151 IPR009040 Ferritin-like diiron domain CLM_1151 IPR012347 Ferritin-like CLM_1151 IPR003251 Rubrerythrin CLM_1151 IPR024934 Rubredoxin-like domain CLM_1152 IPR000979 Phosphodiesterase MJ0936/Vps29 CLM_1152 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type CLM_1152 IPR029052 Metallo-dependent phosphatase-like CLM_1152 IPR041802 YfcE-like, metallophosphatase domain CLM_1152 IPR020935 Phosphodiesterase YfcE, conserved site CLM_1153 IPR039420 Transcriptional regulatory protein WalR-like CLM_1153 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1153 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1153 IPR011006 CheY-like superfamily CLM_1153 IPR001789 Signal transduction response regulator, receiver domain CLM_1157 IPR007197 Radical SAM CLM_1157 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic CLM_1157 IPR013785 Aldolase-type TIM barrel CLM_1157 IPR034457 Organic radical-activating enzymes CLM_1157 IPR001989 Radical-activating enzyme, conserved site CLM_1158 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1158 IPR037219 Peptidase M41-like CLM_1158 IPR003593 AAA+ ATPase domain CLM_1158 IPR011546 Peptidase M41, FtsH extracellular CLM_1158 IPR000642 Peptidase M41 CLM_1158 IPR003959 ATPase, AAA-type, core CLM_1158 IPR041569 AAA ATPase, AAA+ lid domain CLM_1158 IPR005936 Peptidase, FtsH CLM_1158 IPR003960 ATPase, AAA-type, conserved site CLM_1160 IPR003804 L-lactate permease CLM_1161 IPR018657 LarA-like, N-terminal CLM_1162 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal CLM_1162 IPR012255 Electron transfer flavoprotein, beta subunit CLM_1162 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_1162 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site CLM_1162 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1163 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site CLM_1163 IPR001308 Electron transfer flavoprotein alpha subunit/FixB CLM_1163 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal CLM_1163 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1163 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_1163 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal CLM_1163 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_1164 IPR016166 FAD-binding domain, PCMH-type CLM_1164 IPR036318 FAD-binding, type PCMH-like superfamily CLM_1164 IPR016164 FAD-linked oxidase-like, C-terminal CLM_1164 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CLM_1164 IPR006094 FAD linked oxidase, N-terminal CLM_1164 IPR004490 Glycolate oxidase subunit GlcD CLM_1164 IPR004113 FAD-linked oxidase, C-terminal CLM_1169 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1169 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1169 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLM_1169 IPR004839 Aminotransferase, class I/classII CLM_1169 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1171 IPR000835 MarR-type HTH domain CLM_1171 IPR036390 Winged helix DNA-binding domain superfamily CLM_1171 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_1171 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1172 IPR009061 Putative DNA-binding domain superfamily CLM_1172 IPR010499 Bacterial transcription activator, effector binding CLM_1172 IPR029442 GyrI-like small molecule binding domain CLM_1172 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1172 IPR000551 MerR-type HTH domain CLM_1174 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLM_1174 IPR004523 Aspartate-tRNA synthetase, type 2 CLM_1174 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CLM_1174 IPR012340 Nucleic acid-binding, OB-fold CLM_1174 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_1174 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_1179 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_1179 IPR023214 HAD superfamily CLM_1179 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB CLM_1179 IPR006439 HAD hydrolase, subfamily IA CLM_1179 IPR036412 HAD-like superfamily CLM_1179 IPR041492 Haloacid dehalogenase-like hydrolase CLM_1181 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ CLM_1181 IPR017926 Glutamine amidotransferase CLM_1181 IPR029062 Class I glutamine amidotransferase-like CLM_1182 IPR036390 Winged helix DNA-binding domain superfamily CLM_1182 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1182 IPR000847 Transcription regulator HTH, LysR CLM_1182 IPR005119 LysR, substrate-binding CLM_1183 IPR016181 Acyl-CoA N-acyltransferase CLM_1183 IPR000182 GNAT domain CLM_1183 IPR036249 Thioredoxin-like superfamily CLM_1183 IPR025685 YoaP-like domain CLM_1185 IPR011640 Ferrous iron transport protein B, C-terminal CLM_1185 IPR038157 Ferrous iron transporter, core domain CLM_1185 IPR041069 FeoB, cytosolic helical domain CLM_1185 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CLM_1185 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_1185 IPR006073 GTP binding domain CLM_1185 IPR007167 Ferrous iron transporter FeoA domain CLM_1185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1185 IPR005225 Small GTP-binding protein domain CLM_1185 IPR008988 Transcriptional repressor, C-terminal CLM_1185 IPR003373 Ferrous iron transport protein B CLM_1186 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_1186 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1186 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CLM_1186 IPR041069 FeoB, cytosolic helical domain CLM_1186 IPR011640 Ferrous iron transport protein B, C-terminal CLM_1186 IPR003373 Ferrous iron transport protein B CLM_1189 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily CLM_1189 IPR003709 Peptidase M15B CLM_1190 IPR017524 Small acid-soluble spore protein, thioredoxin-like CLM_1191 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1191 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1191 IPR001789 Signal transduction response regulator, receiver domain CLM_1191 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1191 IPR039420 Transcriptional regulatory protein WalR-like CLM_1191 IPR011006 CheY-like superfamily CLM_1192 IPR005467 Histidine kinase domain CLM_1192 IPR031967 PhoR, single Cache-like domain CLM_1192 IPR035965 PAS domain superfamily CLM_1192 IPR000014 PAS domain CLM_1192 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1192 IPR013767 PAS fold CLM_1192 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1192 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1192 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1192 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1194 IPR001128 Cytochrome P450 CLM_1194 IPR002401 Cytochrome P450, E-class, group I CLM_1194 IPR036396 Cytochrome P450 superfamily CLM_1197 IPR039420 Transcriptional regulatory protein WalR-like CLM_1197 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1197 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1197 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1197 IPR001789 Signal transduction response regulator, receiver domain CLM_1197 IPR011006 CheY-like superfamily CLM_1198 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1198 IPR041328 ResE, histidine kinase sensor domain CLM_1198 IPR005467 Histidine kinase domain CLM_1198 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1198 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1198 IPR035965 PAS domain superfamily CLM_1198 IPR003660 HAMP domain CLM_1198 IPR013767 PAS fold CLM_1198 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1198 IPR000014 PAS domain CLM_1198 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1200 IPR011051 RmlC-like cupin domain superfamily CLM_1200 IPR020449 Transcription regulator HTH, AraC- type CLM_1200 IPR032783 AraC-type transcription regulator, ligand-binding domain CLM_1200 IPR014710 RmlC-like jelly roll fold CLM_1200 IPR018060 DNA binding HTH domain, AraC-type CLM_1200 IPR009057 Homeobox-like domain superfamily CLM_1201 IPR037294 ABC transporter, BtuC-like CLM_1201 IPR000522 ABC transporter, permease protein, BtuC-like CLM_1202 IPR037294 ABC transporter, BtuC-like CLM_1202 IPR000522 ABC transporter, permease protein, BtuC-like CLM_1203 IPR017871 ABC transporter, conserved site CLM_1203 IPR003439 ABC transporter-like CLM_1203 IPR003593 AAA+ ATPase domain CLM_1203 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1204 IPR002491 ABC transporter periplasmic binding domain CLM_1204 IPR033870 FatB domain CLM_1205 IPR018060 DNA binding HTH domain, AraC-type CLM_1205 IPR009057 Homeobox-like domain superfamily CLM_1205 IPR018062 HTH domain AraC-type, conserved site CLM_1205 IPR020449 Transcription regulator HTH, AraC- type CLM_1206 IPR039421 Type I protein exporter CLM_1206 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1206 IPR011527 ABC transporter type 1, transmembrane domain CLM_1206 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_1206 IPR017871 ABC transporter, conserved site CLM_1206 IPR003439 ABC transporter-like CLM_1206 IPR003593 AAA+ ATPase domain CLM_1207 IPR011917 ABC transporter, lipid A export, MsbA CLM_1207 IPR039421 Type I protein exporter CLM_1207 IPR017871 ABC transporter, conserved site CLM_1207 IPR003439 ABC transporter-like CLM_1207 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_1207 IPR011527 ABC transporter type 1, transmembrane domain CLM_1207 IPR003593 AAA+ ATPase domain CLM_1207 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1209 IPR011006 CheY-like superfamily CLM_1209 IPR007492 LytTR DNA-binding domain CLM_1209 IPR001789 Signal transduction response regulator, receiver domain CLM_1214 IPR003961 Fibronectin type III CLM_1214 IPR011583 Chitinase II CLM_1214 IPR036573 Carbohydrate-binding module superfamily 5/12 CLM_1214 IPR003610 Carbohydrate-binding module family 5/12 CLM_1214 IPR001223 Glycoside hydrolase family 18, catalytic domain CLM_1214 IPR036116 Fibronectin type III superfamily CLM_1214 IPR001579 Glycoside hydrolase, chitinase active site CLM_1214 IPR017853 Glycoside hydrolase superfamily CLM_1214 IPR013783 Immunoglobulin-like fold CLM_1215 IPR024705 Spermatogenesis-associated protein 20 CLM_1215 IPR008928 Six-hairpin glycosidase superfamily CLM_1215 IPR012341 Six-hairpin glycosidase-like superfamily CLM_1215 IPR004879 Domain of unknown function DUF255 CLM_1215 IPR036249 Thioredoxin-like superfamily CLM_1216 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily CLM_1216 IPR021062 Putative aromatic acid exporter, C-terminal CLM_1216 IPR010343 Aromatic acid exporter family member 1 CLM_1218 IPR036390 Winged helix DNA-binding domain superfamily CLM_1218 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1218 IPR005149 Transcription regulator PadR, N-terminal CLM_1224 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1224 IPR017871 ABC transporter, conserved site CLM_1224 IPR003439 ABC transporter-like CLM_1224 IPR032781 ABC-transporter extension domain CLM_1224 IPR032524 ABC transporter Uup, C-terminal CLM_1224 IPR003593 AAA+ ATPase domain CLM_1224 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLM_1228 IPR006076 FAD dependent oxidoreductase CLM_1228 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1229 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B CLM_1229 IPR023753 FAD/NAD(P)-binding domain CLM_1229 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1229 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLM_1229 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_1231 IPR021159 Glycerate/sugar phosphate transporter, conserved site CLM_1231 IPR005267 Glycerol-3-phosphate transporter CLM_1231 IPR000849 Sugar phosphate transporter CLM_1231 IPR036259 MFS transporter superfamily CLM_1231 IPR020846 Major facilitator superfamily domain CLM_1231 IPR011701 Major facilitator superfamily CLM_1232 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLM_1232 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1232 IPR008909 DALR anticodon binding CLM_1232 IPR035684 Arginyl-tRNA synthetase, catalytic core domain CLM_1232 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily CLM_1232 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_1232 IPR001278 Arginine-tRNA ligase CLM_1232 IPR005148 Arginyl tRNA synthetase N-terminal domain CLM_1233 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1233 IPR004839 Aminotransferase, class I/classII CLM_1233 IPR019881 Diaminopimelate aminotransferase, DapL, Desulfovibrio-type CLM_1233 IPR019942 LL-diaminopimelate aminotransferase/aminotransferase ALD1 CLM_1233 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1233 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1236 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1236 IPR003373 Ferrous iron transport protein B CLM_1236 IPR011640 Ferrous iron transport protein B, C-terminal CLM_1236 IPR041069 FeoB, cytosolic helical domain CLM_1236 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CLM_1236 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLM_1240 IPR003610 Carbohydrate-binding module family 5/12 CLM_1240 IPR036573 Carbohydrate-binding module superfamily 5/12 CLM_1240 IPR017853 Glycoside hydrolase superfamily CLM_1243 IPR018449 NIL domain CLM_1243 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1243 IPR003593 AAA+ ATPase domain CLM_1243 IPR026253 Methionine import ATP-binding protein MetN CLM_1243 IPR003439 ABC transporter-like CLM_1243 IPR017871 ABC transporter, conserved site CLM_1243 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CLM_1243 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CLM_1244 IPR035906 MetI-like superfamily CLM_1244 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1245 IPR004872 Lipoprotein NlpA family CLM_1246 IPR004872 Lipoprotein NlpA family CLM_1247 IPR011650 Peptidase M20, dimerisation domain CLM_1247 IPR002933 Peptidase M20 CLM_1247 IPR036264 Bacterial exopeptidase dimerisation domain CLM_1247 IPR017439 Amidohydrolase CLM_1249 IPR036390 Winged helix DNA-binding domain superfamily CLM_1249 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1249 IPR000524 Transcription regulator HTH, GntR CLM_1249 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_1249 IPR011711 GntR, C-terminal CLM_1250 IPR019264 Domain of unknown function DUF2179 CLM_1250 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_1250 IPR003740 Uncharacterised membrane protein YitT CLM_1252 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1252 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CLM_1252 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CLM_1252 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_1252 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CLM_1252 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CLM_1252 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CLM_1252 IPR033910 Glutamyl-tRNA synthetase CLM_1253 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CLM_1253 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CLM_1253 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CLM_1253 IPR036291 NAD(P)-binding domain superfamily CLM_1253 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CLM_1253 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CLM_1254 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1254 IPR001279 Metallo-beta-lactamase CLM_1254 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLM_1254 IPR022712 Beta-Casp domain CLM_1256 IPR012006 tRNA nucleotidyltransferase, proteobacteria CLM_1256 IPR003607 HD/PDEase domain CLM_1256 IPR006674 HD domain CLM_1256 IPR002646 Poly A polymerase, head domain CLM_1256 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CLM_1257 IPR015590 Aldehyde dehydrogenase domain CLM_1257 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CLM_1257 IPR016161 Aldehyde/histidinol dehydrogenase CLM_1257 IPR016162 Aldehyde dehydrogenase, N-terminal CLM_1257 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLM_1257 IPR016160 Aldehyde dehydrogenase, cysteine active site CLM_1257 IPR016163 Aldehyde dehydrogenase, C-terminal CLM_1258 IPR001463 Sodium:alanine symporter CLM_1259 IPR001463 Sodium:alanine symporter CLM_1260 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1260 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_1260 IPR000835 MarR-type HTH domain CLM_1260 IPR036390 Winged helix DNA-binding domain superfamily CLM_1261 IPR002528 Multi antimicrobial extrusion protein CLM_1264 IPR027020 Protein ynjB CLM_1264 IPR006059 Bacterial extracellular solute-binding protein CLM_1267 IPR035906 MetI-like superfamily CLM_1267 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1269 IPR016732 Uncharacterised conserved protein UCP018688 CLM_1269 IPR016181 Acyl-CoA N-acyltransferase CLM_1270 IPR000182 GNAT domain CLM_1270 IPR016181 Acyl-CoA N-acyltransferase CLM_1273 IPR005642 Lysine exporter LysO CLM_1274 IPR001451 Hexapeptide repeat CLM_1274 IPR018357 Hexapeptide transferase, conserved site CLM_1274 IPR024688 Maltose/galactoside acetyltransferase CLM_1274 IPR011004 Trimeric LpxA-like superfamily CLM_1275 IPR004408 Biotin--acetyl-CoA-carboxylase ligase CLM_1275 IPR030855 Bifunctional ligase/repressor BirA CLM_1275 IPR003142 Biotin protein ligase, C-terminal CLM_1275 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1275 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLM_1275 IPR036390 Winged helix DNA-binding domain superfamily CLM_1275 IPR004409 Biotin operon repressor, helix-turn-helix domain CLM_1275 IPR008988 Transcriptional repressor, C-terminal CLM_1275 IPR013196 Helix-turn-helix, type 11 CLM_1278 IPR041328 ResE, histidine kinase sensor domain CLM_1278 IPR003660 HAMP domain CLM_1278 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1278 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1278 IPR005467 Histidine kinase domain CLM_1278 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1278 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1278 IPR000014 PAS domain CLM_1278 IPR035965 PAS domain superfamily CLM_1278 IPR013767 PAS fold CLM_1278 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1281 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily CLM_1281 IPR006667 SLC41 divalent cation transporters, integral membrane domain CLM_1281 IPR038076 MgtE, N-terminal domain superfamily CLM_1281 IPR038048 Magnesium transporter MgtE, transmembrane domain CLM_1281 IPR006669 Magnesium transporter MgtE CLM_1281 IPR000644 CBS domain CLM_1281 IPR006668 Magnesium transporter, MgtE intracellular domain CLM_1282 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1282 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1282 IPR000192 Aminotransferase class V domain CLM_1282 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CLM_1282 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1283 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_1283 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLM_1283 IPR036291 NAD(P)-binding domain superfamily CLM_1283 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM_1285 IPR024935 Rubredoxin domain CLM_1285 IPR016440 Rubredoxin-oxygen oxidoreductase CLM_1285 IPR024934 Rubredoxin-like domain CLM_1285 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1285 IPR001279 Metallo-beta-lactamase CLM_1285 IPR029039 Flavoprotein-like superfamily CLM_1285 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin CLM_1285 IPR008254 Flavodoxin/nitric oxide synthase CLM_1287 IPR000060 BCCT transporter family CLM_1287 IPR018093 BCCT transporter, conserved site CLM_1290 IPR036380 Isochorismatase-like superfamily CLM_1290 IPR000868 Isochorismatase-like CLM_1295 IPR010079 Xanthine phosphoribosyltransferase CLM_1295 IPR029057 Phosphoribosyltransferase-like CLM_1295 IPR000836 Phosphoribosyltransferase domain CLM_1297 IPR001307 Thiosulphate sulfurtransferase, conserved site CLM_1297 IPR036873 Rhodanese-like domain superfamily CLM_1297 IPR001763 Rhodanese-like domain CLM_1299 IPR002549 Transmembrane protein TqsA-like CLM_1306 IPR035906 MetI-like superfamily CLM_1306 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1310 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLM_1310 IPR022967 RNA-binding domain, S1 CLM_1310 IPR003029 S1 domain CLM_1310 IPR012340 Nucleic acid-binding, OB-fold CLM_1311 IPR029069 HotDog domain superfamily CLM_1311 IPR006683 Thioesterase domain CLM_1311 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family CLM_1311 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site CLM_1314 IPR001851 ABC transporter, permease CLM_1315 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1315 IPR003593 AAA+ ATPase domain CLM_1315 IPR018449 NIL domain CLM_1315 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CLM_1315 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CLM_1315 IPR003439 ABC transporter-like CLM_1315 IPR026253 Methionine import ATP-binding protein MetN CLM_1315 IPR017871 ABC transporter, conserved site CLM_1317 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1317 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1317 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1317 IPR022518 Aspartate 4-decarboxylase CLM_1317 IPR004839 Aminotransferase, class I/classII CLM_1317 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLM_1318 IPR000620 EamA domain CLM_1319 IPR029056 Ribokinase-like CLM_1319 IPR011611 Carbohydrate kinase PfkB CLM_1319 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLM_1320 IPR007342 Pseudouridine-5'-phosphate glycosidase CLM_1320 IPR022830 Indigoidine synthase A-like CLM_1321 IPR036291 NAD(P)-binding domain superfamily CLM_1321 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLM_1321 IPR003710 Ketopantoate reductase ApbA/PanE CLM_1321 IPR013752 Ketopantoate reductase, C-terminal domain CLM_1321 IPR013332 Ketopantoate reductase, N-terminal domain CLM_1321 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLM_1322 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily CLM_1322 IPR007044 Cyclodeaminase/cyclohydrolase CLM_1323 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLM_1323 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLM_1323 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase CLM_1323 IPR036291 NAD(P)-binding domain superfamily CLM_1324 IPR000150 Cof family CLM_1324 IPR036412 HAD-like superfamily CLM_1324 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLM_1328 IPR003689 Zinc/iron permease CLM_1329 IPR030489 Transcription regulator Rrf2-type, conserved site CLM_1329 IPR000944 Transcription regulator Rrf2-type CLM_1329 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1329 IPR036390 Winged helix DNA-binding domain superfamily CLM_1330 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_1330 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_1330 IPR005856 Cysteine synthase CLM_1330 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CLM_1330 IPR005859 Cysteine synthase CysK CLM_1331 IPR035906 MetI-like superfamily CLM_1331 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLM_1331 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1332 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1332 IPR001320 Ionotropic glutamate receptor CLM_1332 IPR018313 Solute-binding protein family 3, conserved site CLM_1333 IPR000192 Aminotransferase class V domain CLM_1333 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1333 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_1333 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1333 IPR016454 Cysteine desulfurase CLM_1333 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal CLM_1333 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1333 IPR010240 Cysteine desulfurase IscS CLM_1334 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE CLM_1334 IPR022310 NAD/GMP synthase CLM_1334 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1336 IPR004506 tRNA-specific 2-thiouridylase CLM_1336 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1336 IPR023382 Adenine nucleotide alpha hydrolase-like domains CLM_1338 IPR001789 Signal transduction response regulator, receiver domain CLM_1338 IPR007492 LytTR DNA-binding domain CLM_1338 IPR011006 CheY-like superfamily CLM_1340 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1340 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB CLM_1340 IPR000014 PAS domain CLM_1340 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1340 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1340 IPR013767 PAS fold CLM_1340 IPR005467 Histidine kinase domain CLM_1340 IPR029151 Periplasmic sensor-like domain superfamily CLM_1340 IPR039506 SpoOB, alpha-helical domain CLM_1340 IPR033463 Single cache domain 3 CLM_1341 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1341 IPR017871 ABC transporter, conserved site CLM_1341 IPR003593 AAA+ ATPase domain CLM_1341 IPR003439 ABC transporter-like CLM_1343 IPR030395 Glycerophosphodiester phosphodiesterase domain CLM_1343 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CLM_1345 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain CLM_1345 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1345 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CLM_1345 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain CLM_1345 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1345 IPR011895 Pyruvate-flavodoxin oxidoreductase CLM_1345 IPR029061 Thiamin diphosphate-binding fold CLM_1345 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CLM_1345 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLM_1345 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal CLM_1345 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain CLM_1348 IPR003846 Protein adenylyltransferase SelO CLM_1349 IPR002937 Amine oxidase CLM_1349 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1349 IPR001613 Flavin amine oxidase CLM_1352 IPR036259 MFS transporter superfamily CLM_1352 IPR001927 Sodium:galactoside symporter CLM_1352 IPR020846 Major facilitator superfamily domain CLM_1352 IPR039672 Lactose permease-like CLM_1352 IPR018043 Sodium:galactoside symporter, conserved site CLM_1354 IPR004654 Glucokinase ROK CLM_1354 IPR000600 ROK family CLM_1355 IPR018120 Glycoside hydrolase family 1, active site CLM_1355 IPR001360 Glycoside hydrolase family 1 CLM_1355 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLM_1355 IPR017853 Glycoside hydrolase superfamily CLM_1356 IPR001554 Glycoside hydrolase, family 14 CLM_1356 IPR034835 Beta-amylase, CBM20 domain CLM_1356 IPR018238 Glycoside hydrolase, family 14, conserved site CLM_1356 IPR017853 Glycoside hydrolase superfamily CLM_1356 IPR013783 Immunoglobulin-like fold CLM_1356 IPR002044 Carbohydrate binding module family 20 CLM_1356 IPR000125 Glycoside hydrolase, family 14A, bacterial CLM_1358 IPR002307 Tyrosine-tRNA ligase CLM_1358 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 CLM_1358 IPR024088 Tyrosine-tRNA ligase, bacterial-type CLM_1358 IPR036986 RNA-binding S4 domain superfamily CLM_1358 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1358 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_1358 IPR002942 RNA-binding S4 domain CLM_1358 IPR002305 Aminoacyl-tRNA synthetase, class Ic CLM_1360 IPR003439 ABC transporter-like CLM_1360 IPR003593 AAA+ ATPase domain CLM_1360 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1364 IPR039286 Exosporium protein C CLM_1367 IPR017853 Glycoside hydrolase superfamily CLM_1367 IPR001223 Glycoside hydrolase family 18, catalytic domain CLM_1367 IPR018392 LysM domain CLM_1367 IPR011583 Chitinase II CLM_1367 IPR029070 Chitinase insertion domain superfamily CLM_1367 IPR036779 LysM domain superfamily CLM_1367 IPR041704 CFLE, GH18 catalytic domain CLM_1368 IPR001633 EAL domain CLM_1368 IPR035919 EAL domain superfamily CLM_1368 IPR029787 Nucleotide cyclase CLM_1368 IPR005330 MHYT domain CLM_1368 IPR035965 PAS domain superfamily CLM_1368 IPR000160 GGDEF domain CLM_1369 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit CLM_1369 IPR005131 Serine dehydratase beta chain CLM_1369 IPR002912 ACT domain CLM_1369 IPR029009 Allosteric substrate binding domain superfamily CLM_1370 IPR004642 Serine dehydratase, alpha subunit CLM_1370 IPR005130 Serine dehydratase-like, alpha subunit CLM_1375 IPR036412 HAD-like superfamily CLM_1375 IPR009206 Nucleotidase, putative CLM_1375 IPR023214 HAD superfamily CLM_1376 IPR008257 Peptidase M19 CLM_1376 IPR032466 Metal-dependent hydrolase CLM_1377 IPR006977 Yip1 domain CLM_1378 IPR003593 AAA+ ATPase domain CLM_1378 IPR003838 ABC transporter permease protein domain CLM_1378 IPR003439 ABC transporter-like CLM_1378 IPR017871 ABC transporter, conserved site CLM_1378 IPR017911 ABC transporter, macrolide export, ATP-binding domain CLM_1378 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1378 IPR025857 MacB-like periplasmic core domain CLM_1380 IPR003439 ABC transporter-like CLM_1380 IPR003593 AAA+ ATPase domain CLM_1380 IPR017871 ABC transporter, conserved site CLM_1380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1381 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLM_1381 IPR035906 MetI-like superfamily CLM_1381 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1382 IPR035906 MetI-like superfamily CLM_1382 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1383 IPR039424 Solute-binding protein family 5 CLM_1383 IPR030678 Peptide/nickel binding protein, MppA-type CLM_1383 IPR000914 Solute-binding protein family 5 domain CLM_1383 IPR023765 Solute-binding protein family 5, conserved site CLM_1386 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain CLM_1386 IPR009078 Ferritin-like superfamily CLM_1386 IPR012347 Ferritin-like CLM_1386 IPR007760 Manganese catalase CLM_1387 IPR018711 Phosphodiester glycosidase CLM_1387 IPR024535 Pectate lyase superfamily protein CLM_1387 IPR012334 Pectin lyase fold CLM_1387 IPR011050 Pectin lyase fold/virulence factor CLM_1391 IPR036157 dUTPase-like superfamily CLM_1391 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase CLM_1391 IPR029054 dUTPase-like CLM_1391 IPR033704 dUTPase, trimeric CLM_1392 IPR012610 Small acid-soluble spore protein, SspH CLM_1395 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_1395 IPR001387 Cro/C1-type helix-turn-helix domain CLM_1398 IPR001647 DNA-binding HTH domain, TetR-type CLM_1398 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_1398 IPR009057 Homeobox-like domain superfamily CLM_1400 IPR003593 AAA+ ATPase domain CLM_1400 IPR003439 ABC transporter-like CLM_1400 IPR017871 ABC transporter, conserved site CLM_1400 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1404 IPR001463 Sodium:alanine symporter CLM_1406 IPR001387 Cro/C1-type helix-turn-helix domain CLM_1406 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_1410 IPR002109 Glutaredoxin CLM_1410 IPR036249 Thioredoxin-like superfamily CLM_1410 IPR011911 Glutaredoxin-like protein, YruB CLM_1410 IPR011767 Glutaredoxin active site CLM_1411 IPR016161 Aldehyde/histidinol dehydrogenase CLM_1411 IPR016163 Aldehyde dehydrogenase, C-terminal CLM_1411 IPR016160 Aldehyde dehydrogenase, cysteine active site CLM_1411 IPR015590 Aldehyde dehydrogenase domain CLM_1411 IPR016162 Aldehyde dehydrogenase, N-terminal CLM_1412 IPR023753 FAD/NAD(P)-binding domain CLM_1412 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CLM_1412 IPR005982 Thioredoxin reductase CLM_1412 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1415 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta CLM_1415 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta CLM_1418 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1418 IPR005982 Thioredoxin reductase CLM_1418 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CLM_1418 IPR023753 FAD/NAD(P)-binding domain CLM_1419 IPR013766 Thioredoxin domain CLM_1419 IPR005746 Thioredoxin CLM_1419 IPR036249 Thioredoxin-like superfamily CLM_1419 IPR017937 Thioredoxin, conserved site CLM_1420 IPR006812 Glycine reductase complex selenoprotein A CLM_1421 IPR006812 Glycine reductase complex selenoprotein A CLM_1422 IPR016039 Thiolase-like CLM_1422 IPR017236 Glycine/sarcosine/betaine reductase, component C, beta CLM_1422 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_1423 IPR003664 Fatty acid synthesis PlsX protein CLM_1423 IPR012116 Glycine/sarcosine/betaine reductase complex, protein C, alpha subunit CLM_1424 IPR011034 Formyl transferase-like, C-terminal domain superfamily CLM_1424 IPR003180 Methylpurine-DNA glycosylase CLM_1424 IPR036995 Methylpurine-DNA glycosylase superfamily CLM_1426 IPR011009 Protein kinase-like domain superfamily CLM_1426 IPR002575 Aminoglycoside phosphotransferase CLM_1426 IPR009212 Methylthioribose kinase CLM_1429 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CLM_1429 IPR001303 Class II aldolase/adducin N-terminal CLM_1430 IPR036390 Winged helix DNA-binding domain superfamily CLM_1430 IPR001034 DeoR-type HTH domain CLM_1430 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1430 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLM_1430 IPR014036 DeoR C-terminal sensor domain CLM_1430 IPR037171 NagB/RpiA transferase-like CLM_1432 IPR002524 Cation efflux protein CLM_1432 IPR027469 Cation efflux transmembrane domain superfamily CLM_1432 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLM_1432 IPR027470 Cation efflux protein, cytoplasmic domain CLM_1433 IPR007353 Protein of unknown function DUF421 CLM_1433 IPR023090 UPF0702, alpha/beta domain superfamily CLM_1444 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_1444 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLM_1444 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CLM_1444 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CLM_1445 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_1445 IPR016166 FAD-binding domain, PCMH-type CLM_1445 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CLM_1445 IPR005107 CO dehydrogenase flavoprotein, C-terminal CLM_1445 IPR002346 Molybdopterin dehydrogenase, FAD-binding CLM_1445 IPR036318 FAD-binding, type PCMH-like superfamily CLM_1446 IPR036884 [2Fe-2S]-binding domain superfamily CLM_1446 IPR036010 2Fe-2S ferredoxin-like superfamily CLM_1446 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CLM_1446 IPR012675 Beta-grasp domain superfamily CLM_1446 IPR002888 [2Fe-2S]-binding CLM_1447 IPR016192 APOBEC/CMP deaminase, zinc-binding CLM_1447 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_1447 IPR016193 Cytidine deaminase-like CLM_1448 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CLM_1448 IPR003601 DNA topoisomerase, type IA, domain 2 CLM_1448 IPR023406 DNA topoisomerase, type IA, active site CLM_1448 IPR000380 DNA topoisomerase, type IA CLM_1448 IPR013497 DNA topoisomerase, type IA, central CLM_1448 IPR034144 DNA topoisomerase 3-like, TOPRIM domain CLM_1448 IPR023405 DNA topoisomerase, type IA, core domain CLM_1448 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLM_1448 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLM_1448 IPR006171 TOPRIM domain CLM_1448 IPR005738 DNA topoisomerase III CLM_1448 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLM_1449 IPR003810 Putative manganese efflux pump CLM_1449 IPR022929 Putative manganese efflux pump MntP CLM_1449 IPR036259 MFS transporter superfamily CLM_1452 IPR001585 Transaldolase/Fructose-6-phosphate aldolase CLM_1452 IPR018225 Transaldolase, active site CLM_1452 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase CLM_1452 IPR013785 Aldolase-type TIM barrel CLM_1452 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial CLM_1452 IPR022999 Transaldolase type 3B, putative CLM_1453 IPR001279 Metallo-beta-lactamase CLM_1453 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1453 IPR001587 Ribonuclease J, conserved site CLM_1453 IPR041636 Ribonuclease J, C-terminal CLM_1453 IPR030854 Ribonuclease J, bacteria CLM_1453 IPR042173 Ribonuclease J, domain 2 CLM_1453 IPR004613 Ribonuclease J CLM_1453 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLM_1454 IPR001463 Sodium:alanine symporter CLM_1456 IPR018763 Protein of unknown function DUF2334 CLM_1457 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1461 IPR021260 Lipid II flippase Amj CLM_1462 IPR038390 Metal-sensitive transcriptional repressor superfamily CLM_1462 IPR003735 Metal-sensitive transcriptional repressor CLM_1463 IPR023299 P-type ATPase, cytoplasmic domain N CLM_1463 IPR018303 P-type ATPase, phosphorylation site CLM_1463 IPR001757 P-type ATPase CLM_1463 IPR027256 P-type ATPase, subfamily IB CLM_1463 IPR036163 Heavy metal-associated domain superfamily CLM_1463 IPR006122 Heavy metal-associated domain, copper ion-binding CLM_1463 IPR017969 Heavy-metal-associated, conserved site CLM_1463 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_1463 IPR036412 HAD-like superfamily CLM_1463 IPR008250 P-type ATPase, A domain superfamily CLM_1463 IPR023214 HAD superfamily CLM_1463 IPR006121 Heavy metal-associated domain, HMA CLM_1464 IPR017969 Heavy-metal-associated, conserved site CLM_1464 IPR036163 Heavy metal-associated domain superfamily CLM_1464 IPR006121 Heavy metal-associated domain, HMA CLM_1464 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ CLM_1464 IPR011795 Mercuric transport protein periplasmic component CLM_1465 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_1465 IPR023299 P-type ATPase, cytoplasmic domain N CLM_1465 IPR018303 P-type ATPase, phosphorylation site CLM_1465 IPR008250 P-type ATPase, A domain superfamily CLM_1465 IPR036412 HAD-like superfamily CLM_1465 IPR023214 HAD superfamily CLM_1465 IPR001757 P-type ATPase CLM_1466 IPR039421 Type I protein exporter CLM_1466 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1466 IPR017871 ABC transporter, conserved site CLM_1466 IPR003439 ABC transporter-like CLM_1466 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_1466 IPR011527 ABC transporter type 1, transmembrane domain CLM_1466 IPR003593 AAA+ ATPase domain CLM_1469 IPR001789 Signal transduction response regulator, receiver domain CLM_1469 IPR011006 CheY-like superfamily CLM_1469 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1469 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1469 IPR039420 Transcriptional regulatory protein WalR-like CLM_1469 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1470 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1470 IPR031967 PhoR, single Cache-like domain CLM_1470 IPR013767 PAS fold CLM_1470 IPR035965 PAS domain superfamily CLM_1470 IPR000014 PAS domain CLM_1470 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1470 IPR005467 Histidine kinase domain CLM_1470 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1470 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1470 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1473 IPR003797 DegV CLM_1491 IPR000045 Prepilin type IV endopeptidase, peptidase domain CLM_1491 IPR010627 Peptidase A24A, N-terminal CLM_1491 IPR014032 Peptidase A24A, prepilin type IV, bacterial CLM_1493 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLM_1493 IPR003148 Regulator of K+ conductance, N-terminal CLM_1493 IPR006036 Potassium uptake protein TrkA CLM_1493 IPR036291 NAD(P)-binding domain superfamily CLM_1493 IPR006037 Regulator of K+ conductance, C-terminal CLM_1494 IPR003445 Cation transporter CLM_1494 IPR004772 TrkH potassium transport family CLM_1495 IPR013986 DExx box DNA helicase domain superfamily CLM_1495 IPR005751 ATP-dependent DNA helicase PcrA CLM_1495 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1495 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1495 IPR000212 DNA helicase, UvrD/REP type CLM_1495 IPR014017 UvrD-like DNA helicase, C-terminal CLM_1495 IPR013986 DExx box DNA helicase domain superfamily CLM_1495 IPR014016 UvrD-like helicase, ATP-binding domain CLM_1495 IPR005751 ATP-dependent DNA helicase PcrA CLM_1495 IPR034739 UvrD/AddA helicase, N-terminal CLM_1495 IPR034739 UvrD/AddA helicase, N-terminal CLM_1495 IPR014017 UvrD-like DNA helicase, C-terminal CLM_1495 IPR014016 UvrD-like helicase, ATP-binding domain CLM_1495 IPR000212 DNA helicase, UvrD/REP type CLM_1497 IPR000524 Transcription regulator HTH, GntR CLM_1497 IPR036390 Winged helix DNA-binding domain superfamily CLM_1497 IPR004839 Aminotransferase, class I/classII CLM_1497 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1497 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1497 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1498 IPR011105 Cell wall hydrolase, SleB CLM_1498 IPR002477 Peptidoglycan binding-like CLM_1498 IPR036365 PGBD-like superfamily CLM_1498 IPR036366 PGBD superfamily CLM_1498 IPR042047 Cell wall hydrolase SleB, domain 1 CLM_1498 IPR014224 Spore cortex-lytic enzyme SleB CLM_1500 IPR012347 Ferritin-like CLM_1500 IPR009078 Ferritin-like superfamily CLM_1500 IPR009040 Ferritin-like diiron domain CLM_1500 IPR003251 Rubrerythrin CLM_1500 IPR024934 Rubredoxin-like domain CLM_1501 IPR007253 Putative cell wall binding repeat 2 CLM_1501 IPR013486 Sporulation stage II protein D, amidase enhancer LytB CLM_1501 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal CLM_1502 IPR036878 Glucose permease domain IIB CLM_1502 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_1502 IPR011299 PTS system glucose-specific IIBC component CLM_1502 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_1502 IPR003352 Phosphotransferase system, EIIC CLM_1502 IPR011055 Duplicated hybrid motif CLM_1502 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLM_1502 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_1502 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_1503 IPR001441 Decaprenyl diphosphate synthase-like CLM_1503 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CLM_1503 IPR036424 Decaprenyl diphosphate synthase-like superfamily CLM_1506 IPR016101 CO dehydrogenase, alpha-bundle CLM_1506 IPR010047 Ni-containing CO dehydrogenase CLM_1506 IPR016099 Prismane-like, alpha/beta-sandwich CLM_1506 IPR011254 Prismane-like superfamily CLM_1506 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase CLM_1508 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB CLM_1508 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLM_1508 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal CLM_1508 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1508 IPR023753 FAD/NAD(P)-binding domain CLM_1508 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLM_1508 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CLM_1508 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_1508 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CLM_1508 IPR017121 Nitrite reductase [NAD(P)H], large subunit CLM_1510 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_1510 IPR003593 AAA+ ATPase domain CLM_1510 IPR011527 ABC transporter type 1, transmembrane domain CLM_1510 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC CLM_1510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1510 IPR003439 ABC transporter-like CLM_1511 IPR020483 Uncharacterised protein family YgbA CLM_1512 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1512 IPR018335 Transcription regulator HTH, Crp-type, conserved site CLM_1512 IPR012318 Crp-type HTH domain CLM_1512 IPR018490 Cyclic nucleotide-binding-like CLM_1512 IPR036390 Winged helix DNA-binding domain superfamily CLM_1513 IPR011701 Major facilitator superfamily CLM_1513 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLM_1513 IPR004734 Multidrug resistance protein CLM_1513 IPR036259 MFS transporter superfamily CLM_1513 IPR020846 Major facilitator superfamily domain CLM_1514 IPR002491 ABC transporter periplasmic binding domain CLM_1515 IPR000522 ABC transporter, permease protein, BtuC-like CLM_1515 IPR037294 ABC transporter, BtuC-like CLM_1516 IPR003593 AAA+ ATPase domain CLM_1516 IPR017871 ABC transporter, conserved site CLM_1516 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1516 IPR003439 ABC transporter-like CLM_1518 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific CLM_1518 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1518 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1519 IPR000281 Helix-turn-helix protein RpiR CLM_1519 IPR009057 Homeobox-like domain superfamily CLM_1519 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1519 IPR001347 Sugar isomerase (SIS) CLM_1519 IPR035472 RpiR-like, SIS domain CLM_1520 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein CLM_1520 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ CLM_1520 IPR005486 Glucokinase regulatory protein, conserved site CLM_1520 IPR001347 Sugar isomerase (SIS) CLM_1521 IPR036878 Glucose permease domain IIB CLM_1521 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_1521 IPR003352 Phosphotransferase system, EIIC CLM_1521 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_1521 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_1529 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1529 IPR003660 HAMP domain CLM_1529 IPR004090 Chemotaxis methyl-accepting receptor CLM_1529 IPR007891 CHASE3 CLM_1530 IPR023765 Solute-binding protein family 5, conserved site CLM_1530 IPR000914 Solute-binding protein family 5 domain CLM_1530 IPR030678 Peptide/nickel binding protein, MppA-type CLM_1530 IPR039424 Solute-binding protein family 5 CLM_1531 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1531 IPR035906 MetI-like superfamily CLM_1532 IPR035906 MetI-like superfamily CLM_1532 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1532 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLM_1533 IPR003439 ABC transporter-like CLM_1533 IPR003593 AAA+ ATPase domain CLM_1533 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1533 IPR017871 ABC transporter, conserved site CLM_1534 IPR003593 AAA+ ATPase domain CLM_1534 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1534 IPR003439 ABC transporter-like CLM_1534 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLM_1534 IPR017871 ABC transporter, conserved site CLM_1536 IPR001626 ABC transporter, TroCD-like CLM_1536 IPR037294 ABC transporter, BtuC-like CLM_1537 IPR003439 ABC transporter-like CLM_1537 IPR003593 AAA+ ATPase domain CLM_1537 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1538 IPR006127 Periplasmic solute binding protein, ZnuA-like CLM_1538 IPR006129 Adhesin B CLM_1538 IPR006128 Adhesion lipoprotein CLM_1541 IPR039435 Diguanylate cyclase DosC, globin sensor domain CLM_1541 IPR029787 Nucleotide cyclase CLM_1541 IPR009050 Globin-like superfamily CLM_1541 IPR012292 Globin/Protoglobin CLM_1541 IPR000160 GGDEF domain CLM_1544 IPR017871 ABC transporter, conserved site CLM_1544 IPR005890 Nitrate transport ATP-binding subunit C/D CLM_1544 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1544 IPR003593 AAA+ ATPase domain CLM_1544 IPR003439 ABC transporter-like CLM_1545 IPR036390 Winged helix DNA-binding domain superfamily CLM_1545 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1545 IPR002481 Ferric-uptake regulator CLM_1546 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_1546 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1546 IPR002852 Uncharacterised protein family UPF0251 CLM_1547 IPR018392 LysM domain CLM_1547 IPR034274 ENP1, carboxypeptidase domain CLM_1547 IPR036779 LysM domain superfamily CLM_1547 IPR000834 Peptidase M14, carboxypeptidase A CLM_1549 IPR001279 Metallo-beta-lactamase CLM_1549 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1549 IPR013471 Ribonuclease Z/BN CLM_1550 IPR002293 Amino acid/polyamine transporter I CLM_1551 IPR012544 Bacterial Pleckstrin homology domain CLM_1551 IPR037063 Bacterial Pleckstrin homology domain superfamily CLM_1552 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1552 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1552 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLM_1553 IPR011006 CheY-like superfamily CLM_1553 IPR000792 Transcription regulator LuxR, C-terminal CLM_1553 IPR001789 Signal transduction response regulator, receiver domain CLM_1553 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1554 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1554 IPR017871 ABC transporter, conserved site CLM_1554 IPR003593 AAA+ ATPase domain CLM_1554 IPR003439 ABC transporter-like CLM_1561 IPR012340 Nucleic acid-binding, OB-fold CLM_1561 IPR012156 Cold shock, CspA CLM_1561 IPR011129 Cold shock domain CLM_1561 IPR019844 Cold-shock (CSD) domain CLM_1561 IPR002059 Cold-shock protein, DNA-binding CLM_1562 IPR001160 Peptidase M20C, Xaa-His dipeptidase CLM_1562 IPR011650 Peptidase M20, dimerisation domain CLM_1562 IPR002933 Peptidase M20 CLM_1565 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CLM_1565 IPR002569 Peptide methionine sulphoxide reductase MsrA CLM_1566 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1566 IPR003593 AAA+ ATPase domain CLM_1566 IPR003439 ABC transporter-like CLM_1566 IPR017871 ABC transporter, conserved site CLM_1567 IPR003838 ABC transporter permease protein domain CLM_1567 IPR027022 ABC transporter permease protein, BceB-type CLM_1569 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1569 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1569 IPR001789 Signal transduction response regulator, receiver domain CLM_1569 IPR011006 CheY-like superfamily CLM_1569 IPR039420 Transcriptional regulatory protein WalR-like CLM_1569 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1570 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1570 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1570 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1570 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1570 IPR005467 Histidine kinase domain CLM_1571 IPR017871 ABC transporter, conserved site CLM_1571 IPR003593 AAA+ ATPase domain CLM_1571 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1571 IPR003439 ABC transporter-like CLM_1572 IPR027022 ABC transporter permease protein, BceB-type CLM_1576 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1576 IPR027619 Putative C-S lyase CLM_1576 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1576 IPR004839 Aminotransferase, class I/classII CLM_1576 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1577 IPR018313 Solute-binding protein family 3, conserved site CLM_1577 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1577 IPR001320 Ionotropic glutamate receptor CLM_1578 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1578 IPR035906 MetI-like superfamily CLM_1578 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLM_1579 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLM_1579 IPR003439 ABC transporter-like CLM_1579 IPR017871 ABC transporter, conserved site CLM_1579 IPR003593 AAA+ ATPase domain CLM_1579 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1581 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily CLM_1581 IPR012338 Beta-lactamase/transpeptidase-like CLM_1581 IPR015956 Penicillin-binding protein, C-terminal domain superfamily CLM_1581 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLM_1581 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLM_1581 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLM_1582 IPR000086 NUDIX hydrolase domain CLM_1582 IPR020476 NUDIX hydrolase CLM_1582 IPR020084 NUDIX hydrolase, conserved site CLM_1582 IPR015797 NUDIX hydrolase-like domain superfamily CLM_1582 IPR003561 Mutator MutT CLM_1584 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_1584 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_1586 IPR018385 C4-dicarboxylate anaerobic carrier-like CLM_1587 IPR013785 Aldolase-type TIM barrel CLM_1587 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase CLM_1587 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CLM_1587 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain CLM_1587 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain CLM_1587 IPR007229 Nicotinate phosphoribosyltransferase family CLM_1587 IPR006405 Nicotinate phosphoribosyltransferase pncB-type CLM_1588 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1588 IPR018313 Solute-binding protein family 3, conserved site CLM_1588 IPR001320 Ionotropic glutamate receptor CLM_1591 IPR014016 UvrD-like helicase, ATP-binding domain CLM_1591 IPR034739 UvrD/AddA helicase, N-terminal CLM_1591 IPR013986 DExx box DNA helicase domain superfamily CLM_1591 IPR014017 UvrD-like DNA helicase, C-terminal CLM_1591 IPR000212 DNA helicase, UvrD/REP type CLM_1591 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1593 IPR020823 Cell division protein FtsA CLM_1593 IPR003494 SHS2 domain inserted in FtsA CLM_1594 IPR036264 Bacterial exopeptidase dimerisation domain CLM_1594 IPR002933 Peptidase M20 CLM_1594 IPR011650 Peptidase M20, dimerisation domain CLM_1594 IPR017439 Amidohydrolase CLM_1595 IPR003646 SH3-like domain, bacterial-type CLM_1595 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_1595 IPR017273 Probable cell wall amidase LytH CLM_1596 IPR002942 RNA-binding S4 domain CLM_1596 IPR006225 Pseudouridine synthase, RluC/RluD CLM_1596 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CLM_1596 IPR006145 Pseudouridine synthase, RsuA/RluA CLM_1596 IPR036986 RNA-binding S4 domain superfamily CLM_1596 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_1597 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLM_1597 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_1597 IPR002797 Polysaccharide biosynthesis protein CLM_1601 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_1601 IPR039697 Iron-type alcohol dehydrogenase-like CLM_1602 IPR041699 Lon protease, AAA domain CLM_1602 IPR027065 Lon protease CLM_1602 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1602 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1602 IPR008269 Peptidase S16, Lon proteolytic domain CLM_1605 IPR011096 FTP domain CLM_1605 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1605 IPR001570 Peptidase M4, C-terminal CLM_1605 IPR025711 PepSY domain CLM_1605 IPR013856 Peptidase M4 domain CLM_1605 IPR023612 Peptidase M4 CLM_1606 IPR023612 Peptidase M4 CLM_1606 IPR025711 PepSY domain CLM_1606 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1606 IPR011096 FTP domain CLM_1606 IPR001570 Peptidase M4, C-terminal CLM_1606 IPR013856 Peptidase M4 domain CLM_1607 IPR001570 Peptidase M4, C-terminal CLM_1607 IPR013856 Peptidase M4 domain CLM_1607 IPR023612 Peptidase M4 CLM_1607 IPR025711 PepSY domain CLM_1607 IPR011096 FTP domain CLM_1607 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1608 IPR025711 PepSY domain CLM_1608 IPR001570 Peptidase M4, C-terminal CLM_1608 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1608 IPR023612 Peptidase M4 CLM_1608 IPR011096 FTP domain CLM_1608 IPR013856 Peptidase M4 domain CLM_1609 IPR001570 Peptidase M4, C-terminal CLM_1609 IPR013856 Peptidase M4 domain CLM_1609 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1609 IPR023612 Peptidase M4 CLM_1609 IPR011096 FTP domain CLM_1609 IPR025711 PepSY domain CLM_1610 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal CLM_1610 IPR013785 Aldolase-type TIM barrel CLM_1610 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal CLM_1610 IPR004393 Nicotinate-nucleotide pyrophosphorylase CLM_1610 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD CLM_1610 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CLM_1610 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily CLM_1611 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CLM_1611 IPR005288 L-aspartate oxidase CLM_1611 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1611 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CLM_1612 IPR023066 Quinolinate synthase A, type 2 CLM_1612 IPR036094 Quinolinate synthetase A superfamily CLM_1612 IPR003473 Quinolinate synthetase A CLM_1614 IPR022000 Min27-like integrase, DNA-binding domain CLM_1614 IPR010998 Integrase/recombinase, N-terminal CLM_1614 IPR013762 Integrase-like, catalytic domain superfamily CLM_1614 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_1614 IPR002104 Integrase, catalytic domain CLM_1616 IPR001387 Cro/C1-type helix-turn-helix domain CLM_1616 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_1619 IPR014054 Bacteriophage regulatory protein, Rha family CLM_1619 IPR005039 Antirepressor protein, C-terminal CLM_1658 IPR029045 ClpP/crotonase-like domain superfamily CLM_1658 IPR033135 ClpP, histidine active site CLM_1658 IPR001907 ATP-dependent Clp protease proteolytic subunit CLM_1658 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_1675 IPR006949 Baseplate protein J-like CLM_1680 IPR024405 Prophage protein BhlA/UviB CLM_1682 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_1688 IPR005744 Hly-III CLM_1688 IPR004254 AdipoR/Haemolysin-III-related CLM_1689 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 CLM_1689 IPR041706 YchF, N-terminal CLM_1689 IPR012676 TGS-like CLM_1689 IPR013029 YchF, C-terminal domain CLM_1689 IPR031167 OBG-type guanine nucleotide-binding (G) domain CLM_1689 IPR006073 GTP binding domain CLM_1689 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1689 IPR004095 TGS CLM_1689 IPR023192 TGS-like domain superfamily CLM_1689 IPR012675 Beta-grasp domain superfamily CLM_1690 IPR003444 Transcriptional regulator MraZ CLM_1690 IPR020603 MraZ domain CLM_1690 IPR037914 SpoVT-AbrB domain superfamily CLM_1690 IPR035644 MraZ, C-terminal CLM_1690 IPR007159 SpoVT-AbrB domain CLM_1690 IPR038619 MraZ superfamily CLM_1690 IPR035642 MraZ, N-terminal CLM_1691 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1691 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily CLM_1691 IPR002903 Ribosomal RNA small subunit methyltransferase H CLM_1693 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CLM_1693 IPR001460 Penicillin-binding protein, transpeptidase CLM_1693 IPR005311 Penicillin-binding protein, dimerisation domain CLM_1693 IPR011927 Stage V sporulation protein D CLM_1693 IPR005543 PASTA domain CLM_1693 IPR012338 Beta-lactamase/transpeptidase-like CLM_1694 IPR013221 Mur ligase, central CLM_1694 IPR035911 MurE/MurF, N-terminal CLM_1694 IPR000713 Mur ligase, N-terminal catalytic domain CLM_1694 IPR036615 Mur ligase, C-terminal domain superfamily CLM_1694 IPR004101 Mur ligase, C-terminal CLM_1694 IPR036565 Mur-like, catalytic domain superfamily CLM_1694 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase CLM_1695 IPR036565 Mur-like, catalytic domain superfamily CLM_1695 IPR004101 Mur ligase, C-terminal CLM_1695 IPR036615 Mur ligase, C-terminal domain superfamily CLM_1695 IPR013221 Mur ligase, central CLM_1695 IPR000713 Mur ligase, N-terminal catalytic domain CLM_1695 IPR035911 MurE/MurF, N-terminal CLM_1695 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase CLM_1696 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CLM_1696 IPR000715 Glycosyl transferase, family 4 CLM_1696 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CLM_1697 IPR013438 Sporulation stage V, protein E CLM_1697 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLM_1697 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLM_1697 IPR013437 Probable peptidoglycan glycosyltransferase FtsW CLM_1698 IPR005548 Cell division protein FtsQ/DivIB CLM_1698 IPR026580 Cell division protein DivIB CLM_1698 IPR034746 POTRA domain CLM_1698 IPR013685 POTRA domain, FtsQ-type CLM_1700 IPR009709 Protein of unknown function DUF1290 CLM_1702 IPR029066 PLP-binding barrel CLM_1702 IPR001608 Alanine racemase, N-terminal CLM_1702 IPR011078 Pyridoxal phosphate homeostasis protein CLM_1703 IPR038594 SepF-like superfamily CLM_1703 IPR007561 Cell division protein SepF/SepF-related CLM_1703 IPR023052 Cell division protein SepF CLM_1704 IPR003425 CCB3/YggT CLM_1706 IPR011229 Cell cycle protein GpsB CLM_1706 IPR019933 DivIVA domain CLM_1706 IPR007793 DivIVA family CLM_1707 IPR016037 3-dehydroquinate synthase AroB CLM_1707 IPR030963 3-dehydroquinate synthase family CLM_1707 IPR030960 3-dehydroquinate synthase domain CLM_1708 IPR000845 Nucleoside phosphorylase domain CLM_1708 IPR035994 Nucleoside phosphorylase superfamily CLM_1708 IPR010049 MTA/SAH nucleosidase CLM_1709 IPR013785 Aldolase-type TIM barrel CLM_1709 IPR002701 Chorismate mutase II, prokaryotic-type CLM_1709 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 CLM_1709 IPR006218 DAHP synthetase I/KDSA CLM_1709 IPR036979 Chorismate mutase domain superfamily CLM_1709 IPR010954 Chorismate mutase, Firmicutes/Deinococcus CLM_1710 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase CLM_1710 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CLM_1710 IPR001986 Enolpyruvate transferase domain CLM_1710 IPR036968 Enolpyruvate transferase domain superfamily CLM_1710 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site CLM_1711 IPR037187 DksA, N-terminal domain superfamily CLM_1711 IPR014240 Regulatory protein, YteA family CLM_1711 IPR000962 Zinc finger, DksA/TraR C4-type CLM_1712 IPR001872 Peptidase A8, signal peptidase II CLM_1713 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_1713 IPR006225 Pseudouridine synthase, RluC/RluD CLM_1713 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CLM_1713 IPR006145 Pseudouridine synthase, RsuA/RluA CLM_1713 IPR002942 RNA-binding S4 domain CLM_1713 IPR036986 RNA-binding S4 domain superfamily CLM_1715 IPR029057 Phosphoribosyltransferase-like CLM_1715 IPR000836 Phosphoribosyltransferase domain CLM_1715 IPR023050 Bifunctional protein PyrR CLM_1716 IPR029935 Uracil permease CLM_1716 IPR006042 Xanthine/uracil permease CLM_1716 IPR006043 Xanthine/uracil/vitamin C permease CLM_1718 IPR020847 AP endonuclease 1, binding site CLM_1718 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_1718 IPR005135 Endonuclease/exonuclease/phosphatase CLM_1718 IPR004808 AP endonuclease 1 CLM_1718 IPR020848 AP endonuclease 1, conserved site CLM_1719 IPR004114 THUMP domain CLM_1719 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1719 IPR000241 Putative RNA methylase domain CLM_1719 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLM_1721 IPR005950 Molybdate ABC transporter, substrate-binding protein CLM_1721 IPR041879 YvgL-like, substrate binding domain CLM_1722 IPR035906 MetI-like superfamily CLM_1722 IPR011867 Molybdate ABC transporter, permease protein CLM_1722 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1723 IPR005666 Sulphate transport system permease protein 1 CLM_1723 IPR008995 Molybdate/tungstate binding, C-terminal CLM_1723 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1723 IPR017871 ABC transporter, conserved site CLM_1723 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal CLM_1723 IPR003439 ABC transporter-like CLM_1723 IPR003593 AAA+ ATPase domain CLM_1725 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_1725 IPR002641 Patatin-like phospholipase domain CLM_1727 IPR006361 Uroporphyrinogen decarboxylase HemE CLM_1727 IPR000257 Uroporphyrinogen decarboxylase (URO-D) CLM_1727 IPR038071 UROD/MetE-like superfamily CLM_1728 IPR004770 Na+/H+ antiporter NhaC CLM_1728 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CLM_1730 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1730 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CLM_1730 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CLM_1732 IPR036594 Methionine synthase domain CLM_1732 IPR036724 Cobalamin-binding domain superfamily CLM_1732 IPR012741 Methyltransferase cognate corrinoid protein CLM_1732 IPR006158 Cobalamin (vitamin B12)-binding domain CLM_1732 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain CLM_1733 IPR006361 Uroporphyrinogen decarboxylase HemE CLM_1733 IPR000257 Uroporphyrinogen decarboxylase (URO-D) CLM_1733 IPR038071 UROD/MetE-like superfamily CLM_1735 IPR003439 ABC transporter-like CLM_1735 IPR017871 ABC transporter, conserved site CLM_1735 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CLM_1735 IPR026253 Methionine import ATP-binding protein MetN CLM_1735 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CLM_1735 IPR003593 AAA+ ATPase domain CLM_1735 IPR018449 NIL domain CLM_1735 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1736 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1736 IPR035906 MetI-like superfamily CLM_1737 IPR004872 Lipoprotein NlpA family CLM_1739 IPR013785 Aldolase-type TIM barrel CLM_1739 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1739 IPR023753 FAD/NAD(P)-binding domain CLM_1739 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CLM_1740 IPR004618 Aspartate--ammonia ligase CLM_1740 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_1741 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily CLM_1741 IPR005805 Rieske iron-sulphur protein, C-terminal CLM_1741 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CLM_1741 IPR038010 YhfW, C-terminal Rieske domain CLM_1741 IPR006076 FAD dependent oxidoreductase CLM_1741 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1742 IPR000380 DNA topoisomerase, type IA CLM_1742 IPR013497 DNA topoisomerase, type IA, central CLM_1742 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLM_1742 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLM_1742 IPR023406 DNA topoisomerase, type IA, active site CLM_1742 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLM_1742 IPR023405 DNA topoisomerase, type IA, core domain CLM_1742 IPR034144 DNA topoisomerase 3-like, TOPRIM domain CLM_1742 IPR006171 TOPRIM domain CLM_1742 IPR005738 DNA topoisomerase III CLM_1742 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CLM_1742 IPR003601 DNA topoisomerase, type IA, domain 2 CLM_1743 IPR000432 DNA mismatch repair protein MutS, C-terminal CLM_1743 IPR007861 DNA mismatch repair protein MutS, clamp CLM_1743 IPR007696 DNA mismatch repair protein MutS, core CLM_1743 IPR016151 DNA mismatch repair protein MutS, N-terminal CLM_1743 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1743 IPR036678 MutS, connector domain superfamily CLM_1743 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CLM_1743 IPR017261 DNA mismatch repair protein MutS/MSH CLM_1743 IPR005748 DNA mismatch repair protein MutS CLM_1743 IPR007860 DNA mismatch repair protein MutS, connector domain CLM_1743 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_1744 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1744 IPR023210 NADP-dependent oxidoreductase domain CLM_1745 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CLM_1745 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CLM_1745 IPR040285 Prolyl-tRNA editing protein ProX/PRXD1 CLM_1746 IPR017871 ABC transporter, conserved site CLM_1746 IPR003439 ABC transporter-like CLM_1746 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1746 IPR003593 AAA+ ATPase domain CLM_1748 IPR039538 BetI-type transcriptional repressor, C-terminal CLM_1748 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_1748 IPR009057 Homeobox-like domain superfamily CLM_1748 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_1748 IPR017757 Transcriptional repressor BetI CLM_1748 IPR001647 DNA-binding HTH domain, TetR-type CLM_1750 IPR003593 AAA+ ATPase domain CLM_1750 IPR013611 Transport-associated OB, type 2 CLM_1750 IPR003439 ABC transporter-like CLM_1750 IPR017871 ABC transporter, conserved site CLM_1750 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1750 IPR015853 ABC transporter, ferric cation import, FbpC CLM_1750 IPR008995 Molybdate/tungstate binding, C-terminal CLM_1751 IPR035906 MetI-like superfamily CLM_1751 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1752 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1752 IPR035906 MetI-like superfamily CLM_1754 IPR001557 L-lactate/malate dehydrogenase CLM_1754 IPR018177 L-lactate dehydrogenase, active site CLM_1754 IPR022383 Lactate/malate dehydrogenase, C-terminal CLM_1754 IPR036291 NAD(P)-binding domain superfamily CLM_1754 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLM_1754 IPR011304 L-lactate dehydrogenase CLM_1754 IPR001236 Lactate/malate dehydrogenase, N-terminal CLM_1755 IPR011711 GntR, C-terminal CLM_1755 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_1755 IPR036390 Winged helix DNA-binding domain superfamily CLM_1755 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1755 IPR000524 Transcription regulator HTH, GntR CLM_1759 IPR006674 HD domain CLM_1759 IPR003607 HD/PDEase domain CLM_1759 IPR037522 HD-GYP domain CLM_1759 IPR001789 Signal transduction response regulator, receiver domain CLM_1759 IPR011006 CheY-like superfamily CLM_1761 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_1761 IPR029151 Periplasmic sensor-like domain superfamily CLM_1761 IPR033479 Double Cache domain 1 CLM_1761 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1761 IPR003660 HAMP domain CLM_1764 IPR036390 Winged helix DNA-binding domain superfamily CLM_1764 IPR002577 Helix-turn-helix, HxlR type CLM_1764 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1766 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding CLM_1766 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1766 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily CLM_1766 IPR023546 Methylated-DNA--protein-cysteine methyltransferase CLM_1766 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain CLM_1766 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain CLM_1766 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site CLM_1767 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLM_1767 IPR009215 TIM-barrel domain, IGPS-like CLM_1767 IPR013785 Aldolase-type TIM barrel CLM_1768 IPR008322 Uncharacterised protein family UPF0261 CLM_1769 IPR013785 Aldolase-type TIM barrel CLM_1769 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLM_1769 IPR009215 TIM-barrel domain, IGPS-like CLM_1773 IPR027470 Cation efflux protein, cytoplasmic domain CLM_1773 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLM_1773 IPR027469 Cation efflux transmembrane domain superfamily CLM_1773 IPR002524 Cation efflux protein CLM_1774 IPR005279 Dipeptide/tripeptide permease CLM_1774 IPR000109 Proton-dependent oligopeptide transporter family CLM_1774 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLM_1774 IPR036259 MFS transporter superfamily CLM_1774 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B CLM_1777 IPR013976 Metal-dependent hydrolase HDOD CLM_1780 IPR023299 P-type ATPase, cytoplasmic domain N CLM_1780 IPR018303 P-type ATPase, phosphorylation site CLM_1780 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_1780 IPR008250 P-type ATPase, A domain superfamily CLM_1780 IPR036412 HAD-like superfamily CLM_1780 IPR006068 Cation-transporting P-type ATPase, C-terminal CLM_1780 IPR023214 HAD superfamily CLM_1780 IPR004014 Cation-transporting P-type ATPase, N-terminal CLM_1780 IPR001757 P-type ATPase CLM_1788 IPR011006 CheY-like superfamily CLM_1788 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1788 IPR001789 Signal transduction response regulator, receiver domain CLM_1788 IPR000792 Transcription regulator LuxR, C-terminal CLM_1791 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1791 IPR036390 Winged helix DNA-binding domain superfamily CLM_1791 IPR026881 WYL domain CLM_1791 IPR001034 DeoR-type HTH domain CLM_1791 IPR028349 Protein PafC CLM_1791 IPR013196 Helix-turn-helix, type 11 CLM_1794 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_1794 IPR008275 CoA enzyme activase CLM_1795 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family CLM_1795 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily CLM_1796 IPR024924 7-carboxy-7-deazaguanine synthase-like CLM_1796 IPR007197 Radical SAM CLM_1796 IPR013785 Aldolase-type TIM barrel CLM_1796 IPR023868 7-carboxy-7-deazaguanine synthase, Clostridial form CLM_1797 IPR001474 GTP cyclohydrolase I CLM_1797 IPR020602 GTP cyclohydrolase I domain CLM_1797 IPR018234 GTP cyclohydrolase I, conserved site CLM_1798 IPR018317 Queuosine biosynthesis protein QueC CLM_1798 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1799 IPR003675 CAAX prenyl protease 2 CLM_1800 IPR013655 PAS fold-3 CLM_1800 IPR035965 PAS domain superfamily CLM_1800 IPR000700 PAS-associated, C-terminal CLM_1800 IPR000014 PAS domain CLM_1800 IPR001610 PAC motif CLM_1800 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1800 IPR004090 Chemotaxis methyl-accepting receptor CLM_1803 IPR037171 NagB/RpiA transferase-like CLM_1803 IPR007324 Sugar-binding domain, putative CLM_1803 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_1804 IPR011343 Deoxyribose-phosphate aldolase CLM_1804 IPR028581 Deoxyribose-phosphate aldolase type I CLM_1804 IPR002915 DeoC/FbaB/ lacD aldolase CLM_1804 IPR013785 Aldolase-type TIM barrel CLM_1805 IPR011877 Ribokinase CLM_1805 IPR002139 Ribokinase/fructokinase CLM_1805 IPR029056 Ribokinase-like CLM_1805 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLM_1805 IPR011611 Carbohydrate kinase PfkB CLM_1806 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CLM_1806 IPR004517 ATP phosphoribosyltransferase regulatory subunit CLM_1806 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_1806 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CLM_1807 IPR013820 ATP phosphoribosyltransferase, catalytic domain CLM_1807 IPR001348 ATP phosphoribosyltransferase HisG CLM_1807 IPR018198 ATP phosphoribosyltransferase, conserved site CLM_1807 IPR024893 ATP phosphoribosyltransferase HisG, short form CLM_1808 IPR001692 Histidinol dehydrogenase, conserved site CLM_1808 IPR012131 Histidinol dehydrogenase CLM_1808 IPR016161 Aldehyde/histidinol dehydrogenase CLM_1808 IPR022695 Histidinol dehydrogenase, monofunctional CLM_1809 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1809 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily CLM_1809 IPR000807 Imidazoleglycerol-phosphate dehydratase CLM_1809 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site CLM_1810 IPR017926 Glutamine amidotransferase CLM_1810 IPR010139 Imidazole glycerol phosphate synthase, subunit H CLM_1810 IPR029062 Class I glutamine amidotransferase-like CLM_1811 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA CLM_1811 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CLM_1811 IPR013785 Aldolase-type TIM barrel CLM_1811 IPR011060 Ribulose-phosphate binding barrel CLM_1811 IPR006062 Histidine biosynthesis CLM_1812 IPR004839 Aminotransferase, class I/classII CLM_1812 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1812 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1812 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1812 IPR005861 Histidinol-phosphate aminotransferase family CLM_1812 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CLM_1813 IPR013785 Aldolase-type TIM barrel CLM_1813 IPR004651 Histidine biosynthesis, HisF CLM_1813 IPR006062 Histidine biosynthesis CLM_1813 IPR011060 Ribulose-phosphate binding barrel CLM_1814 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily CLM_1814 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain CLM_1814 IPR026660 Phosphoribosyl-AMP cyclohydrolase CLM_1815 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase CLM_1815 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like CLM_1816 IPR007272 Sulphur transport domain CLM_1818 IPR007272 Sulphur transport domain CLM_1819 IPR036390 Winged helix DNA-binding domain superfamily CLM_1819 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1819 IPR005119 LysR, substrate-binding CLM_1819 IPR000847 Transcription regulator HTH, LysR CLM_1821 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_1821 IPR023536 Coenzyme A disulphide reductase, staphyolococci CLM_1821 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLM_1821 IPR023753 FAD/NAD(P)-binding domain CLM_1821 IPR017758 Coenzyme A disulphide reductase CLM_1821 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1822 IPR007272 Sulphur transport domain CLM_1823 IPR003439 ABC transporter-like CLM_1823 IPR022501 Gallidermin ABC transporter, ATP-binding subunit CLM_1823 IPR003593 AAA+ ATPase domain CLM_1823 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1823 IPR017871 ABC transporter, conserved site CLM_1826 IPR001789 Signal transduction response regulator, receiver domain CLM_1826 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1826 IPR011006 CheY-like superfamily CLM_1826 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1826 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1826 IPR039420 Transcriptional regulatory protein WalR-like CLM_1827 IPR005467 Histidine kinase domain CLM_1827 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1827 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB CLM_1827 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1827 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1827 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1828 IPR003876 Arginine deiminase CLM_1829 IPR022461 Arginine/ornithine antiporter CLM_1829 IPR004754 Amino acid antiporter CLM_1829 IPR002293 Amino acid/polyamine transporter I CLM_1830 IPR004254 AdipoR/Haemolysin-III-related CLM_1830 IPR005744 Hly-III CLM_1838 IPR007527 Zinc finger, SWIM-type CLM_1838 IPR038718 SNF2-like, N-terminal domain superfamily CLM_1838 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1838 IPR001650 Helicase, C-terminal CLM_1838 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1838 IPR000330 SNF2-related, N-terminal domain CLM_1841 IPR020449 Transcription regulator HTH, AraC- type CLM_1841 IPR018062 HTH domain AraC-type, conserved site CLM_1841 IPR018060 DNA binding HTH domain, AraC-type CLM_1841 IPR009057 Homeobox-like domain superfamily CLM_1841 IPR002491 ABC transporter periplasmic binding domain CLM_1842 IPR017871 ABC transporter, conserved site CLM_1842 IPR011527 ABC transporter type 1, transmembrane domain CLM_1842 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_1842 IPR003593 AAA+ ATPase domain CLM_1842 IPR039421 Type I protein exporter CLM_1842 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1842 IPR003439 ABC transporter-like CLM_1843 IPR011917 ABC transporter, lipid A export, MsbA CLM_1843 IPR017871 ABC transporter, conserved site CLM_1843 IPR039421 Type I protein exporter CLM_1843 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1843 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_1843 IPR003593 AAA+ ATPase domain CLM_1843 IPR003439 ABC transporter-like CLM_1843 IPR011527 ABC transporter type 1, transmembrane domain CLM_1844 IPR000843 LacI-type HTH domain CLM_1844 IPR001761 Periplasmic binding protein/LacI sugar binding domain CLM_1844 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_1844 IPR028082 Periplasmic binding protein-like I CLM_1845 IPR000600 ROK family CLM_1845 IPR022687 DTXR-type HTH domain CLM_1845 IPR036390 Winged helix DNA-binding domain superfamily CLM_1845 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1846 IPR013780 Glycosyl hydrolase, all-beta CLM_1846 IPR017853 Glycoside hydrolase superfamily CLM_1846 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLM_1846 IPR032091 Maltogenic Amylase, C-terminal CLM_1847 IPR011300 Phosphotransferase system, IIBC component CLM_1847 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_1847 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_1847 IPR003352 Phosphotransferase system, EIIC CLM_1847 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_1847 IPR036878 Glucose permease domain IIB CLM_1847 IPR011055 Duplicated hybrid motif CLM_1847 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_1850 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CLM_1850 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CLM_1850 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria CLM_1850 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_1853 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_1853 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1853 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_1853 IPR005467 Histidine kinase domain CLM_1853 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_1853 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1854 IPR039420 Transcriptional regulatory protein WalR-like CLM_1854 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1854 IPR011006 CheY-like superfamily CLM_1854 IPR001789 Signal transduction response regulator, receiver domain CLM_1854 IPR016032 Signal transduction response regulator, C-terminal effector CLM_1854 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_1856 IPR007382 Uncharacterised protein family UPF0756, transmembrame CLM_1857 IPR000150 Cof family CLM_1857 IPR036412 HAD-like superfamily CLM_1857 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLM_1857 IPR023214 HAD superfamily CLM_1858 IPR001034 DeoR-type HTH domain CLM_1858 IPR037171 NagB/RpiA transferase-like CLM_1858 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1858 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLM_1858 IPR036390 Winged helix DNA-binding domain superfamily CLM_1858 IPR014036 DeoR C-terminal sensor domain CLM_1861 IPR013661 Peptidase M9, collagenase, N-terminal domain CLM_1861 IPR041379 Collagenase ColG, catalytic helper subdomain CLM_1861 IPR007280 Peptidase, C-terminal, archaeal/bacterial CLM_1861 IPR002169 Peptidase M9A/M9B, collagenase, bacterial CLM_1863 IPR004620 5,10-methylenetetrahydrofolate reductase CLM_1863 IPR003171 Methylenetetrahydrofolate reductase CLM_1863 IPR029041 FAD-linked oxidoreductase-like CLM_1865 IPR000489 Pterin-binding domain CLM_1865 IPR036724 Cobalamin-binding domain superfamily CLM_1865 IPR036594 Methionine synthase domain CLM_1865 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily CLM_1865 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain CLM_1865 IPR006158 Cobalamin (vitamin B12)-binding domain CLM_1865 IPR004223 Vitamin B12-dependent methionine synthase, activation domain CLM_1865 IPR003726 Homocysteine-binding domain CLM_1865 IPR011005 Dihydropteroate synthase-like CLM_1865 IPR036589 Homocysteine-binding domain superfamily CLM_1865 IPR033706 Methionine synthase, B12-binding domain CLM_1865 IPR011822 Cobalamin-dependent methionine synthase CLM_1869 IPR025944 Sigma-54 interaction domain, conserved site CLM_1869 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_1869 IPR029016 GAF-like domain superfamily CLM_1869 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1869 IPR003593 AAA+ ATPase domain CLM_1869 IPR002197 DNA binding HTH domain, Fis-type CLM_1869 IPR000014 PAS domain CLM_1869 IPR035965 PAS domain superfamily CLM_1869 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_1869 IPR009057 Homeobox-like domain superfamily CLM_1869 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1871 IPR001017 Dehydrogenase, E1 component CLM_1871 IPR029061 Thiamin diphosphate-binding fold CLM_1872 IPR029061 Thiamin diphosphate-binding fold CLM_1872 IPR033248 Transketolase, C-terminal domain CLM_1872 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_1872 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLM_1873 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLM_1873 IPR002504 NAD kinase CLM_1873 IPR011391 Acetoin catabolism kinase AcoX CLM_1873 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLM_1873 IPR039065 AcoX-like CLM_1874 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CLM_1874 IPR011053 Single hybrid motif CLM_1874 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_1874 IPR036625 E3-binding domain superfamily CLM_1874 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex CLM_1874 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CLM_1874 IPR004167 Peripheral subunit-binding domain CLM_1874 IPR000089 Biotin/lipoyl attachment CLM_1875 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1875 IPR023753 FAD/NAD(P)-binding domain CLM_1875 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_1875 IPR006258 Dihydrolipoamide dehydrogenase CLM_1875 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CLM_1875 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CLM_1875 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLM_1876 IPR004562 Lipoyltransferase/lipoate-protein ligase CLM_1876 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLM_1876 IPR019491 Lipoate protein ligase, C-terminal CLM_1877 IPR005892 Glycine betaine transport ATP-binding subunit CLM_1877 IPR003439 ABC transporter-like CLM_1877 IPR017871 ABC transporter, conserved site CLM_1877 IPR000644 CBS domain CLM_1877 IPR003593 AAA+ ATPase domain CLM_1877 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1878 IPR035906 MetI-like superfamily CLM_1878 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1879 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_1879 IPR004450 Threonine synthase-like CLM_1879 IPR037158 Threonine synthase, N-terminal domain superfamily CLM_1879 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_1879 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CLM_1880 IPR013750 GHMP kinase, C-terminal domain CLM_1880 IPR006203 GHMP kinase, ATP-binding, conserved site CLM_1880 IPR006204 GHMP kinase N-terminal domain CLM_1880 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1880 IPR036554 GHMP kinase, C-terminal domain superfamily CLM_1880 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1880 IPR000870 Homoserine kinase CLM_1881 IPR002912 ACT domain CLM_1881 IPR035804 Aspartokinase 3, N-terminal CLM_1881 IPR036393 Acetylglutamate kinase-like superfamily CLM_1881 IPR027795 CASTOR, ACT domain CLM_1881 IPR018042 Aspartate kinase, conserved site CLM_1881 IPR001341 Aspartate kinase CLM_1881 IPR005260 Aspartate kinase, monofunctional class CLM_1881 IPR001048 Aspartate/glutamate/uridylate kinase CLM_1882 IPR019811 Homoserine dehydrogenase, conserved site CLM_1882 IPR036291 NAD(P)-binding domain superfamily CLM_1882 IPR002912 ACT domain CLM_1882 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding CLM_1882 IPR001342 Homoserine dehydrogenase, catalytic CLM_1882 IPR016204 Homoserine dehydrogenase CLM_1883 IPR009057 Homeobox-like domain superfamily CLM_1883 IPR029016 GAF-like domain superfamily CLM_1883 IPR003593 AAA+ ATPase domain CLM_1883 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1883 IPR000014 PAS domain CLM_1883 IPR035965 PAS domain superfamily CLM_1883 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_1883 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1883 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_1883 IPR002197 DNA binding HTH domain, Fis-type CLM_1883 IPR025944 Sigma-54 interaction domain, conserved site CLM_1884 IPR039697 Iron-type alcohol dehydrogenase-like CLM_1884 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_1884 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_1885 IPR017938 Riboflavin synthase-like beta-barrel CLM_1885 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_1885 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_1885 IPR017927 FAD-binding domain, ferredoxin reductase-type CLM_1885 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit CLM_1885 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLM_1886 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1886 IPR009051 Alpha-helical ferredoxin CLM_1886 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 CLM_1886 IPR023753 FAD/NAD(P)-binding domain CLM_1886 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1886 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1886 IPR028261 Dihydroprymidine dehydrogenase domain II CLM_1887 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_1887 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_1887 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1887 IPR025944 Sigma-54 interaction domain, conserved site CLM_1887 IPR009057 Homeobox-like domain superfamily CLM_1887 IPR003593 AAA+ ATPase domain CLM_1887 IPR002197 DNA binding HTH domain, Fis-type CLM_1887 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1887 IPR000014 PAS domain CLM_1887 IPR029016 GAF-like domain superfamily CLM_1887 IPR035965 PAS domain superfamily CLM_1889 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_1889 IPR003343 Bacterial Ig-like, group 2 CLM_1889 IPR008964 Invasin/intimin cell-adhesion fragments CLM_1897 IPR025944 Sigma-54 interaction domain, conserved site CLM_1897 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_1897 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1897 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_1897 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1897 IPR002197 DNA binding HTH domain, Fis-type CLM_1897 IPR009057 Homeobox-like domain superfamily CLM_1897 IPR029016 GAF-like domain superfamily CLM_1897 IPR003593 AAA+ ATPase domain CLM_1897 IPR003018 GAF domain CLM_1900 IPR011079 Alanine racemase, C-terminal CLM_1900 IPR001608 Alanine racemase, N-terminal CLM_1900 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CLM_1900 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CLM_1900 IPR000821 Alanine racemase CLM_1900 IPR029066 PLP-binding barrel CLM_1901 IPR003660 HAMP domain CLM_1901 IPR033479 Double Cache domain 1 CLM_1901 IPR029151 Periplasmic sensor-like domain superfamily CLM_1901 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1902 IPR006043 Xanthine/uracil/vitamin C permease CLM_1904 IPR036291 NAD(P)-binding domain superfamily CLM_1904 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLM_1904 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1905 IPR033479 Double Cache domain 1 CLM_1905 IPR003660 HAMP domain CLM_1905 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1905 IPR029151 Periplasmic sensor-like domain superfamily CLM_1905 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_1908 IPR001650 Helicase, C-terminal CLM_1908 IPR038718 SNF2-like, N-terminal domain superfamily CLM_1908 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1908 IPR000330 SNF2-related, N-terminal domain CLM_1908 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1908 IPR007527 Zinc finger, SWIM-type CLM_1909 IPR023370 TrmO-like, N-terminal domain CLM_1909 IPR023368 Uncharacterised protein family UPF0066, conserved site CLM_1909 IPR040372 YaeB-like CLM_1909 IPR036413 YaeB-like superfamily CLM_1909 IPR036414 YaeB, N-terminal domain superfamily CLM_1912 IPR023765 Solute-binding protein family 5, conserved site CLM_1912 IPR000914 Solute-binding protein family 5 domain CLM_1912 IPR039424 Solute-binding protein family 5 CLM_1912 IPR030678 Peptide/nickel binding protein, MppA-type CLM_1913 IPR035906 MetI-like superfamily CLM_1913 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_1915 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLM_1915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1915 IPR003439 ABC transporter-like CLM_1915 IPR003593 AAA+ ATPase domain CLM_1915 IPR017871 ABC transporter, conserved site CLM_1916 IPR006935 Helicase/UvrB, N-terminal CLM_1916 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type CLM_1916 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_1916 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1916 IPR001650 Helicase, C-terminal CLM_1916 IPR036397 Ribonuclease H superfamily CLM_1916 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CLM_1916 IPR012337 Ribonuclease H-like superfamily CLM_1916 IPR006310 3'-5' exonuclease DinG CLM_1916 IPR006555 ATP-dependent helicase, C-terminal CLM_1917 IPR009343 Protein of unknown function DUF1002 CLM_1919 IPR031107 Small heat shock protein HSP20 CLM_1919 IPR002068 Alpha crystallin/Hsp20 domain CLM_1919 IPR008978 HSP20-like chaperone CLM_1920 IPR036259 MFS transporter superfamily CLM_1920 IPR020846 Major facilitator superfamily domain CLM_1920 IPR011701 Major facilitator superfamily CLM_1921 IPR009057 Homeobox-like domain superfamily CLM_1921 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_1921 IPR001647 DNA-binding HTH domain, TetR-type CLM_1923 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLM_1923 IPR011611 Carbohydrate kinase PfkB CLM_1923 IPR017583 Tagatose/fructose phosphokinase CLM_1923 IPR029056 Ribokinase-like CLM_1923 IPR022463 Fructose 1-phosphate kinase CLM_1924 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLM_1924 IPR000109 Proton-dependent oligopeptide transporter family CLM_1924 IPR036259 MFS transporter superfamily CLM_1924 IPR020846 Major facilitator superfamily domain CLM_1924 IPR005279 Dipeptide/tripeptide permease CLM_1927 IPR024301 Putative amidase domain CLM_1929 IPR029056 Ribokinase-like CLM_1929 IPR011611 Carbohydrate kinase PfkB CLM_1929 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLM_1930 IPR035940 CAP superfamily CLM_1930 IPR014258 CAP domain, YkwD-like CLM_1930 IPR014044 CAP domain CLM_1932 IPR029151 Periplasmic sensor-like domain superfamily CLM_1932 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1932 IPR003660 HAMP domain CLM_1932 IPR033479 Double Cache domain 1 CLM_1933 IPR032781 ABC-transporter extension domain CLM_1933 IPR003439 ABC transporter-like CLM_1933 IPR003593 AAA+ ATPase domain CLM_1933 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1934 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1934 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1934 IPR014261 Sulphite reductase, subunit C CLM_1934 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CLM_1934 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CLM_1934 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CLM_1934 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CLM_1935 IPR036061 CheW-like domain superfamily CLM_1935 IPR024181 Chemotaxis response regulator CheV CLM_1935 IPR002545 CheW-like domain CLM_1935 IPR011006 CheY-like superfamily CLM_1935 IPR001789 Signal transduction response regulator, receiver domain CLM_1936 IPR014014 RNA helicase, DEAD-box type, Q motif CLM_1936 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1936 IPR011545 DEAD/DEAH box helicase domain CLM_1936 IPR001650 Helicase, C-terminal CLM_1936 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1937 IPR003029 S1 domain CLM_1937 IPR012340 Nucleic acid-binding, OB-fold CLM_1937 IPR014464 Conserved virulence factor B CLM_1937 IPR040764 Conserved virulence factor B-like, winged helix domain CLM_1937 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1937 IPR039566 Conserved virulence factor B, S1 domain CLM_1937 IPR022967 RNA-binding domain, S1 CLM_1938 IPR028619 ATP-dependent RNA helicase DbpA CLM_1938 IPR011545 DEAD/DEAH box helicase domain CLM_1938 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1938 IPR001650 Helicase, C-terminal CLM_1938 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLM_1938 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1938 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_1938 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain CLM_1938 IPR014014 RNA helicase, DEAD-box type, Q motif CLM_1941 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CLM_1941 IPR025987 GW domain CLM_1941 IPR038200 GW domain superfamily CLM_1942 IPR041719 Ferritin, prokaryotic-type CLM_1942 IPR009040 Ferritin-like diiron domain CLM_1942 IPR012347 Ferritin-like CLM_1942 IPR001519 Ferritin CLM_1942 IPR009078 Ferritin-like superfamily CLM_1942 IPR008331 Ferritin/DPS protein domain CLM_1943 IPR001789 Signal transduction response regulator, receiver domain CLM_1943 IPR011006 CheY-like superfamily CLM_1946 IPR038300 SASP, alpha/beta-type superfamily CLM_1946 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLM_1946 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLM_1947 IPR038300 SASP, alpha/beta-type superfamily CLM_1947 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLM_1947 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLM_1950 IPR002104 Integrase, catalytic domain CLM_1950 IPR013762 Integrase-like, catalytic domain superfamily CLM_1950 IPR010998 Integrase/recombinase, N-terminal CLM_1950 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_1950 IPR004107 Integrase, SAM-like, N-terminal CLM_1952 IPR006199 LexA repressor, DNA-binding domain CLM_1952 IPR039418 LexA-like CLM_1952 IPR006200 Transcription regulator LexA CLM_1952 IPR036390 Winged helix DNA-binding domain superfamily CLM_1952 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1952 IPR015927 Peptidase S24/S26A/S26B/S26C CLM_1952 IPR036286 LexA/Signal peptidase-like superfamily CLM_1952 IPR006197 Peptidase S24, LexA-like CLM_1952 IPR011991 ArsR-like helix-turn-helix domain CLM_1953 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1953 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1953 IPR009651 Putative methionine gamma-lyase CLM_1954 IPR005001 RNA-binding protein Hfq CLM_1954 IPR010920 LSM domain superfamily CLM_1955 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1955 IPR018022 IPP transferase CLM_1955 IPR039657 Dimethylallyltransferase CLM_1956 IPR002099 DNA mismatch repair protein family, N-terminal CLM_1956 IPR014762 DNA mismatch repair, conserved site CLM_1956 IPR020667 DNA mismatch repair protein, MutL CLM_1956 IPR013507 DNA mismatch repair protein, S5 domain 2-like CLM_1956 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1956 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms CLM_1956 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1956 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1956 IPR037198 MutL, C-terminal domain superfamily CLM_1956 IPR042121 MutL, C-terminal domain, regulatory subdomain CLM_1956 IPR014790 MutL, C-terminal, dimerisation CLM_1956 IPR042120 MutL, C-terminal domain, dimerisation subdomain CLM_1957 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1957 IPR007861 DNA mismatch repair protein MutS, clamp CLM_1957 IPR036678 MutS, connector domain superfamily CLM_1957 IPR005748 DNA mismatch repair protein MutS CLM_1957 IPR016151 DNA mismatch repair protein MutS, N-terminal CLM_1957 IPR000432 DNA mismatch repair protein MutS, C-terminal CLM_1957 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_1957 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CLM_1957 IPR017261 DNA mismatch repair protein MutS/MSH CLM_1957 IPR007696 DNA mismatch repair protein MutS, core CLM_1957 IPR007860 DNA mismatch repair protein MutS, connector domain CLM_1958 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB CLM_1958 IPR023404 Radical SAM, alpha/beta horseshoe CLM_1958 IPR020612 Methylthiotransferase, conserved site CLM_1958 IPR013848 Methylthiotransferase, N-terminal CLM_1958 IPR007197 Radical SAM CLM_1958 IPR006638 Elp3/MiaB/NifB CLM_1958 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLM_1958 IPR005839 Methylthiotransferase CLM_1958 IPR002792 TRAM domain CLM_1959 IPR004839 Aminotransferase, class I/classII CLM_1959 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1959 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1959 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1961 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_1961 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1961 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLM_1961 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_1961 IPR004839 Aminotransferase, class I/classII CLM_1964 IPR022967 RNA-binding domain, S1 CLM_1964 IPR012340 Nucleic acid-binding, OB-fold CLM_1964 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLM_1964 IPR003029 S1 domain CLM_1965 IPR003136 Cytidylate kinase CLM_1965 IPR011994 Cytidylate kinase domain CLM_1965 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1967 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like CLM_1967 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1967 IPR023166 HI0933-like insert domain superfamily CLM_1968 IPR036291 NAD(P)-binding domain superfamily CLM_1968 IPR033524 Leu/Phe/Val dehydrogenases active site CLM_1968 IPR014362 Glutamate dehydrogenase CLM_1968 IPR033922 NAD(P) binding domain of glutamate dehydrogenase CLM_1968 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CLM_1968 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CLM_1968 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CLM_1969 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1969 IPR001347 Sugar isomerase (SIS) CLM_1969 IPR035472 RpiR-like, SIS domain CLM_1969 IPR000281 Helix-turn-helix protein RpiR CLM_1969 IPR009057 Homeobox-like domain superfamily CLM_1970 IPR006145 Pseudouridine synthase, RsuA/RluA CLM_1970 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_1970 IPR002942 RNA-binding S4 domain CLM_1970 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CLM_1970 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CLM_1970 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CLM_1970 IPR036986 RNA-binding S4 domain superfamily CLM_1972 IPR005130 Serine dehydratase-like, alpha subunit CLM_1972 IPR021144 Uncharacterised protein family UPF0597 CLM_1973 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1975 IPR003660 HAMP domain CLM_1975 IPR029151 Periplasmic sensor-like domain superfamily CLM_1975 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1975 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_1975 IPR033479 Double Cache domain 1 CLM_1976 IPR036249 Thioredoxin-like superfamily CLM_1976 IPR035671 DsbD gamma CLM_1976 IPR022910 Thiol:disulphide interchange protein DsbD CLM_1976 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CLM_1976 IPR003834 Cytochrome C biogenesis protein, transmembrane domain CLM_1976 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CLM_1976 IPR013766 Thioredoxin domain CLM_1978 IPR003010 Carbon-nitrogen hydrolase CLM_1978 IPR036526 Carbon-nitrogen hydrolase superfamily CLM_1978 IPR001110 Uncharacterised protein family UPF0012, conserved site CLM_1980 IPR036291 NAD(P)-binding domain superfamily CLM_1980 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLM_1980 IPR003148 Regulator of K+ conductance, N-terminal CLM_1980 IPR006153 Cation/H+ exchanger CLM_1980 IPR006037 Regulator of K+ conductance, C-terminal CLM_1980 IPR038770 Sodium/solute symporter superfamily CLM_1981 IPR003779 Carboxymuconolactone decarboxylase-like CLM_1981 IPR029032 AhpD-like CLM_1984 IPR002765 Uncharacterised protein family UPF0145 CLM_1984 IPR035439 UPF0145 domain superfamily CLM_1986 IPR036249 Thioredoxin-like superfamily CLM_1990 IPR011854 Carbamoyl dehydratase HypE CLM_1990 IPR010918 PurM-like, C-terminal domain CLM_1990 IPR036676 PurM-like, C-terminal domain superfamily CLM_1990 IPR016188 PurM-like, N-terminal domain CLM_1990 IPR036921 PurM-like, N-terminal domain superfamily CLM_1991 IPR042244 HypD, domain 1 CLM_1991 IPR002780 Hydrogenase formation HypD protein CLM_1991 IPR042243 HypD, domain 2 CLM_1992 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CLM_1992 IPR037254 HupF/HypC superfamily CLM_1992 IPR019812 Hydrogenase assembly chaperone, conserved site CLM_1993 IPR006070 YrdC-like domain CLM_1993 IPR017968 Acylphosphatase, conserved site CLM_1993 IPR041440 HypF, Kae1-like domain CLM_1993 IPR036046 Acylphosphatase-like domain superfamily CLM_1993 IPR004421 Carbamoyltransferase, HypF-type CLM_1993 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLM_1993 IPR001792 Acylphosphatase-like domain CLM_1993 IPR011125 Zinc finger, HypF-type CLM_1997 IPR001501 Nickel-dependent hydrogenase, large subunit CLM_1997 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site CLM_1997 IPR029014 [NiFe]-hydrogenase, large subunit CLM_1998 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CLM_1998 IPR001821 [NiFe]-hydrogenase, small subunit CLM_1998 IPR006311 Twin-arginine translocation pathway, signal sequence CLM_1998 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily CLM_1998 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit CLM_1998 IPR027394 Cytochrome-c3 hydrogenase, C-terminal CLM_1998 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily CLM_2001 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CLM_2001 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CLM_2001 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLM_2001 IPR011607 Methylglyoxal synthase-like domain CLM_2001 IPR036914 Methylglyoxal synthase-like domain superfamily CLM_2001 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily CLM_2001 IPR006275 Carbamoyl-phosphate synthase, large subunit CLM_2001 IPR016185 Pre-ATP-grasp domain superfamily CLM_2001 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain CLM_2001 IPR011761 ATP-grasp fold CLM_2002 IPR017926 Glutamine amidotransferase CLM_2002 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain CLM_2002 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily CLM_2002 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain CLM_2002 IPR006274 Carbamoyl-phosphate synthase, small subunit CLM_2002 IPR029062 Class I glutamine amidotransferase-like CLM_2006 IPR003593 AAA+ ATPase domain CLM_2006 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2006 IPR017871 ABC transporter, conserved site CLM_2006 IPR003439 ABC transporter-like CLM_2006 IPR032781 ABC-transporter extension domain CLM_2007 IPR036010 2Fe-2S ferredoxin-like superfamily CLM_2007 IPR013352 Iron hydrogenase, subset CLM_2007 IPR003149 Iron hydrogenase, small subunit CLM_2007 IPR036991 Iron hydrogenase, small subunit superfamily CLM_2007 IPR004108 Iron hydrogenase, large subunit, C-terminal CLM_2007 IPR009016 Iron hydrogenase CLM_2007 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2007 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2007 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding CLM_2007 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CLM_2008 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily CLM_2008 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CLM_2008 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CLM_2008 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site CLM_2008 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2008 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2008 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain CLM_2009 IPR028431 NADP-reducing hydrogenase subunit HndA CLM_2009 IPR042128 NuoE domain CLM_2009 IPR002023 NADH-quinone oxidoreductase subunit E-like CLM_2009 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal CLM_2009 IPR036249 Thioredoxin-like superfamily CLM_2010 IPR006153 Cation/H+ exchanger CLM_2010 IPR038770 Sodium/solute symporter superfamily CLM_2010 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2010 IPR006016 UspA CLM_2012 IPR002549 Transmembrane protein TqsA-like CLM_2013 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLM_2013 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLM_2013 IPR012338 Beta-lactamase/transpeptidase-like CLM_2013 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLM_2015 IPR014229 Sporulation protein YtfJ CLM_2016 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2016 IPR005234 Chromosome segregation/condensation protein ScpB CLM_2016 IPR036390 Winged helix DNA-binding domain superfamily CLM_2017 IPR003768 Segregation and condensation protein A CLM_2020 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLM_2020 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily CLM_2020 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLM_2020 IPR012338 Beta-lactamase/transpeptidase-like CLM_2020 IPR015956 Penicillin-binding protein, C-terminal domain superfamily CLM_2020 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLM_2021 IPR024787 EcsC protein CLM_2024 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic CLM_2024 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal CLM_2024 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site CLM_2024 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase CLM_2024 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily CLM_2024 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily CLM_2024 IPR000312 Glycosyl transferase, family 3 CLM_2024 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily CLM_2024 IPR017459 Glycosyl transferase family 3, N-terminal domain CLM_2025 IPR035994 Nucleoside phosphorylase superfamily CLM_2025 IPR000845 Nucleoside phosphorylase domain CLM_2025 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific CLM_2025 IPR011268 Purine nucleoside phosphorylase CLM_2025 IPR018099 Purine phosphorylase, family 2, conserved site CLM_2026 IPR004107 Integrase, SAM-like, N-terminal CLM_2026 IPR013762 Integrase-like, catalytic domain superfamily CLM_2026 IPR011932 Tyrosine recombinase XerD CLM_2026 IPR002104 Integrase, catalytic domain CLM_2026 IPR010998 Integrase/recombinase, N-terminal CLM_2026 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_2030 IPR000086 NUDIX hydrolase domain CLM_2030 IPR015797 NUDIX hydrolase-like domain superfamily CLM_2030 IPR004385 Nucleoside diphosphate pyrophosphatase CLM_2030 IPR020084 NUDIX hydrolase, conserved site CLM_2031 IPR002293 Amino acid/polyamine transporter I CLM_2032 IPR038765 Papain-like cysteine peptidase superfamily CLM_2032 IPR000064 Endopeptidase, NLPC/P60 domain CLM_2036 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_2038 IPR024405 Prophage protein BhlA/UviB CLM_2087 IPR002104 Integrase, catalytic domain CLM_2087 IPR013762 Integrase-like, catalytic domain superfamily CLM_2087 IPR004107 Integrase, SAM-like, N-terminal CLM_2087 IPR011931 Tyrosine recombinase XerC CLM_2087 IPR010998 Integrase/recombinase, N-terminal CLM_2087 IPR023009 Tyrosine recombinase XerC/XerD CLM_2087 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_2088 IPR011006 CheY-like superfamily CLM_2088 IPR016032 Signal transduction response regulator, C-terminal effector CLM_2088 IPR001789 Signal transduction response regulator, receiver domain CLM_2088 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2088 IPR012052 Sporulation transcription factor Spo0A CLM_2088 IPR014879 Sporulation initiation factor Spo0A, C-terminal CLM_2089 IPR009003 Peptidase S1, PA clan CLM_2089 IPR014219 Peptidase S55, sporulation stage IV, protein B CLM_2089 IPR036034 PDZ superfamily CLM_2089 IPR001478 PDZ domain CLM_2089 IPR041489 PDZ domain 6 CLM_2089 IPR008763 Peptidase S55, SpoIVB CLM_2090 IPR005697 Homoserine O-succinyltransferase MetA CLM_2090 IPR029062 Class I glutamine amidotransferase-like CLM_2090 IPR033752 MetA family CLM_2091 IPR002912 ACT domain CLM_2091 IPR036291 NAD(P)-binding domain superfamily CLM_2091 IPR019811 Homoserine dehydrogenase, conserved site CLM_2091 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding CLM_2091 IPR016204 Homoserine dehydrogenase CLM_2091 IPR001342 Homoserine dehydrogenase, catalytic CLM_2092 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2092 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2092 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase CLM_2092 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2092 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLM_2094 IPR003395 RecF/RecN/SMC, N-terminal CLM_2094 IPR004604 DNA recombination/repair protein RecN CLM_2094 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2095 IPR036390 Winged helix DNA-binding domain superfamily CLM_2095 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2095 IPR020900 Arginine repressor, DNA-binding domain CLM_2095 IPR001669 Arginine repressor CLM_2095 IPR020899 Arginine repressor, C-terminal CLM_2095 IPR036251 Arginine repressor, C-terminal domain superfamily CLM_2096 IPR002504 NAD kinase CLM_2096 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal CLM_2096 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLM_2096 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLM_2097 IPR004538 Haemolysin A /rRNA methyltransferase TlyA CLM_2097 IPR002877 Ribosomal RNA methyltransferase FtsJ domain CLM_2097 IPR036986 RNA-binding S4 domain superfamily CLM_2097 IPR002942 RNA-binding S4 domain CLM_2097 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2098 IPR029061 Thiamin diphosphate-binding fold CLM_2098 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLM_2098 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_2098 IPR033248 Transketolase, C-terminal domain CLM_2098 IPR005474 Transketolase, N-terminal CLM_2098 IPR005477 Deoxyxylulose-5-phosphate synthase CLM_2100 IPR000092 Polyprenyl synthetase CLM_2100 IPR008949 Isoprenoid synthase domain superfamily CLM_2100 IPR033749 Polyprenyl synthetase, conserved site CLM_2101 IPR037004 Exonuclease VII, small subunit superfamily CLM_2101 IPR003761 Exonuclease VII, small subunit CLM_2102 IPR025824 OB-fold nucleic acid binding domain CLM_2102 IPR020579 Exonuclease VII, large subunit, C-terminal CLM_2102 IPR003753 Exonuclease VII, large subunit CLM_2103 IPR006027 NusB/RsmB/TIM44 CLM_2103 IPR011605 NusB antitermination factor CLM_2103 IPR035926 NusB-like superfamily CLM_2104 IPR005531 Alkaline shock protein Asp23 CLM_2108 IPR014194 Sporulation stage III, protein AE CLM_2109 IPR025664 Stage III sporulation protein AC/AD family CLM_2109 IPR014211 Stage III sporulation protein AD CLM_2110 IPR025664 Stage III sporulation protein AC/AD family CLM_2110 IPR009570 Stage III sporulation protein AC CLM_2112 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2112 IPR014217 Sporulation stage III, protein AA CLM_2112 IPR003593 AAA+ ATPase domain CLM_2114 IPR013852 Translation elongation factor P/YeiP, conserved site CLM_2114 IPR011768 Translation elongation factor P CLM_2114 IPR020599 Translation elongation factor P/YeiP CLM_2114 IPR008991 Translation protein SH3-like domain superfamily CLM_2114 IPR014722 Ribosomal protein L2, domain 2 CLM_2114 IPR012340 Nucleic acid-binding, OB-fold CLM_2114 IPR001059 Translation elongation factor P/YeiP, central CLM_2114 IPR013185 Translation elongation factor, KOW-like CLM_2114 IPR015365 Elongation factor P, C-terminal CLM_2115 IPR001874 Dehydroquinase, class II CLM_2115 IPR018509 Dehydroquinase, class II, conserved site CLM_2115 IPR036441 Dehydroquinase, class II superfamily CLM_2116 IPR031322 Shikimate kinase/gluconokinase CLM_2116 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2116 IPR000623 Shikimate kinase/Threonine synthase-like 1 CLM_2124 IPR010054 General secretion pathway protein G CLM_2124 IPR013545 Type II secretion system protein G CLM_2124 IPR012902 Prokaryotic N-terminal methylation site CLM_2124 IPR000983 Bacterial general secretion pathway protein G-type pilin CLM_2125 IPR003004 GspF/PilC family CLM_2125 IPR011850 General secretion pathway protein F CLM_2125 IPR001992 Type II secretion system conserved site CLM_2125 IPR042094 Type II secretion system F domain superfamily CLM_2125 IPR018076 Type II secretion system F domain CLM_2126 IPR003593 AAA+ ATPase domain CLM_2126 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2126 IPR013369 Type II secretion system GspE CLM_2126 IPR001482 Type II/IV secretion system protein CLM_2126 IPR042181 Type II secretion system, protein E, N-terminal CLM_2126 IPR037257 General secretory system II, protein E, N-terminal superfamily CLM_2129 IPR001653 Diaminopimelate epimerase, DapF CLM_2129 IPR018510 Diaminopimelate epimerase, active site CLM_2131 IPR020095 Pseudouridine synthase I, TruA, C-terminal CLM_2131 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CLM_2131 IPR001406 Pseudouridine synthase I, TruA CLM_2131 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_2133 IPR039384 HINT family CLM_2133 IPR036265 HIT-like superfamily CLM_2133 IPR011146 HIT-like domain CLM_2133 IPR001310 Histidine triad (HIT) protein CLM_2133 IPR019808 Histidine triad, conserved site CLM_2134 IPR010107 Glutamate decarboxylase CLM_2134 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2134 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2134 IPR002129 Pyridoxal phosphate-dependent decarboxylase CLM_2136 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2136 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_2136 IPR004090 Chemotaxis methyl-accepting receptor CLM_2136 IPR003660 HAMP domain CLM_2137 IPR014173 Peptidase C11, Clostripain Clostridium species CLM_2137 IPR005077 Peptidase C11, clostripain CLM_2139 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2139 IPR039420 Transcriptional regulatory protein WalR-like CLM_2139 IPR001789 Signal transduction response regulator, receiver domain CLM_2139 IPR016032 Signal transduction response regulator, C-terminal effector CLM_2139 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2139 IPR011006 CheY-like superfamily CLM_2140 IPR001610 PAC motif CLM_2140 IPR000700 PAS-associated, C-terminal CLM_2140 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2140 IPR035965 PAS domain superfamily CLM_2140 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2140 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_2140 IPR005467 Histidine kinase domain CLM_2140 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2140 IPR003660 HAMP domain CLM_2140 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2140 IPR000014 PAS domain CLM_2141 IPR002569 Peptide methionine sulphoxide reductase MsrA CLM_2141 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CLM_2142 IPR013767 PAS fold CLM_2142 IPR035965 PAS domain superfamily CLM_2142 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_2142 IPR041328 ResE, histidine kinase sensor domain CLM_2142 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2142 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2142 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2142 IPR003660 HAMP domain CLM_2142 IPR005467 Histidine kinase domain CLM_2142 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2142 IPR000014 PAS domain CLM_2143 IPR001789 Signal transduction response regulator, receiver domain CLM_2143 IPR039420 Transcriptional regulatory protein WalR-like CLM_2143 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2143 IPR011006 CheY-like superfamily CLM_2143 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2146 IPR003439 ABC transporter-like CLM_2146 IPR017871 ABC transporter, conserved site CLM_2146 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2146 IPR003593 AAA+ ATPase domain CLM_2148 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_2148 IPR011527 ABC transporter type 1, transmembrane domain CLM_2148 IPR003593 AAA+ ATPase domain CLM_2148 IPR003439 ABC transporter-like CLM_2148 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2148 IPR039421 Type I protein exporter CLM_2149 IPR017871 ABC transporter, conserved site CLM_2149 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2149 IPR011527 ABC transporter type 1, transmembrane domain CLM_2149 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_2149 IPR003439 ABC transporter-like CLM_2149 IPR039421 Type I protein exporter CLM_2149 IPR003593 AAA+ ATPase domain CLM_2153 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal CLM_2153 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal CLM_2153 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal CLM_2153 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 CLM_2153 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 CLM_2153 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily CLM_2154 IPR003593 AAA+ ATPase domain CLM_2154 IPR035965 PAS domain superfamily CLM_2154 IPR029016 GAF-like domain superfamily CLM_2154 IPR000014 PAS domain CLM_2154 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_2154 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2154 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2154 IPR025944 Sigma-54 interaction domain, conserved site CLM_2154 IPR002197 DNA binding HTH domain, Fis-type CLM_2154 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2154 IPR009057 Homeobox-like domain superfamily CLM_2156 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain CLM_2156 IPR023045 Molybdenum cofactor biosynthesis C CLM_2156 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily CLM_2157 IPR006638 Elp3/MiaB/NifB CLM_2157 IPR013483 Molybdenum cofactor biosynthesis protein A CLM_2157 IPR013785 Aldolase-type TIM barrel CLM_2157 IPR010505 Molybdenum cofactor synthesis C-terminal CLM_2157 IPR007197 Radical SAM CLM_2157 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site CLM_2158 IPR005110 MoeA, N-terminal and linker domain CLM_2158 IPR036135 MoeA, N-terminal and linker domain superfamily CLM_2158 IPR036425 MoaB/Mog-like domain superfamily CLM_2158 IPR001453 MoaB/Mog domain CLM_2158 IPR038987 Molybdopterin biosynthesis protein MoeA-like CLM_2158 IPR005111 MoeA, C-terminal, domain IV CLM_2158 IPR036688 MoeA, C-terminal, domain IV superfamily CLM_2159 IPR036688 MoeA, C-terminal, domain IV superfamily CLM_2159 IPR005110 MoeA, N-terminal and linker domain CLM_2159 IPR036425 MoaB/Mog-like domain superfamily CLM_2159 IPR001453 MoaB/Mog domain CLM_2159 IPR005111 MoeA, C-terminal, domain IV CLM_2159 IPR036135 MoeA, N-terminal and linker domain superfamily CLM_2159 IPR038987 Molybdopterin biosynthesis protein MoeA-like CLM_2159 IPR008284 Molybdenum cofactor biosynthesis, conserved site CLM_2160 IPR036425 MoaB/Mog-like domain superfamily CLM_2160 IPR001453 MoaB/Mog domain CLM_2160 IPR008284 Molybdenum cofactor biosynthesis, conserved site CLM_2161 IPR003439 ABC transporter-like CLM_2161 IPR003593 AAA+ ATPase domain CLM_2161 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2162 IPR035906 MetI-like superfamily CLM_2162 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_2163 IPR024370 PBP domain CLM_2164 IPR002528 Multi antimicrobial extrusion protein CLM_2167 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2167 IPR003439 ABC transporter-like CLM_2167 IPR003593 AAA+ ATPase domain CLM_2168 IPR025857 MacB-like periplasmic core domain CLM_2168 IPR003838 ABC transporter permease protein domain CLM_2170 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2170 IPR003593 AAA+ ATPase domain CLM_2170 IPR011527 ABC transporter type 1, transmembrane domain CLM_2170 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_2170 IPR003439 ABC transporter-like CLM_2170 IPR039421 Type I protein exporter CLM_2171 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2171 IPR003593 AAA+ ATPase domain CLM_2171 IPR017871 ABC transporter, conserved site CLM_2171 IPR011527 ABC transporter type 1, transmembrane domain CLM_2171 IPR003439 ABC transporter-like CLM_2171 IPR039421 Type I protein exporter CLM_2171 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_2172 IPR029442 GyrI-like small molecule binding domain CLM_2172 IPR000551 MerR-type HTH domain CLM_2172 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2172 IPR009061 Putative DNA-binding domain superfamily CLM_2176 IPR036116 Fibronectin type III superfamily CLM_2176 IPR003961 Fibronectin type III CLM_2176 IPR013783 Immunoglobulin-like fold CLM_2176 IPR017853 Glycoside hydrolase superfamily CLM_2176 IPR011583 Chitinase II CLM_2176 IPR001579 Glycoside hydrolase, chitinase active site CLM_2176 IPR001223 Glycoside hydrolase family 18, catalytic domain CLM_2176 IPR003610 Carbohydrate-binding module family 5/12 CLM_2176 IPR036573 Carbohydrate-binding module superfamily 5/12 CLM_2177 IPR035965 PAS domain superfamily CLM_2177 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2177 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_2177 IPR009057 Homeobox-like domain superfamily CLM_2177 IPR029016 GAF-like domain superfamily CLM_2177 IPR003593 AAA+ ATPase domain CLM_2177 IPR000014 PAS domain CLM_2177 IPR002197 DNA binding HTH domain, Fis-type CLM_2177 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2177 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2177 IPR025944 Sigma-54 interaction domain, conserved site CLM_2178 IPR017167 Uncharacterised conserved protein UCP037291, glutaredoxin-related CLM_2178 IPR036249 Thioredoxin-like superfamily CLM_2179 IPR019897 RidA, conserved site CLM_2179 IPR006175 YjgF/YER057c/UK114 family CLM_2179 IPR006056 RidA family CLM_2179 IPR035959 RutC-like superfamily CLM_2180 IPR001991 Sodium:dicarboxylate symporter CLM_2180 IPR018107 Sodium:dicarboxylate symporter, conserved site CLM_2180 IPR036458 Sodium:dicarboxylate symporter superfamily CLM_2180 IPR023954 C4-dicarboxylate transport protein CLM_2181 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2181 IPR027619 Putative C-S lyase CLM_2181 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2181 IPR004839 Aminotransferase, class I/classII CLM_2181 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2182 IPR021144 Uncharacterised protein family UPF0597 CLM_2182 IPR005130 Serine dehydratase-like, alpha subunit CLM_2185 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2185 IPR005467 Histidine kinase domain CLM_2185 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2185 IPR003660 HAMP domain CLM_2185 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2185 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2186 IPR001789 Signal transduction response regulator, receiver domain CLM_2186 IPR011006 CheY-like superfamily CLM_2186 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2186 IPR039420 Transcriptional regulatory protein WalR-like CLM_2186 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2188 IPR003339 ABC/ECF transporter, transmembrane component CLM_2189 IPR003593 AAA+ ATPase domain CLM_2189 IPR003439 ABC transporter-like CLM_2189 IPR017871 ABC transporter, conserved site CLM_2189 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2191 IPR029066 PLP-binding barrel CLM_2191 IPR001608 Alanine racemase, N-terminal CLM_2192 IPR004761 Spore germination GerAB CLM_2193 IPR004995 Bacillus/Clostridium Ger spore germination protein CLM_2194 IPR004761 Spore germination GerAB CLM_2198 IPR029032 AhpD-like CLM_2198 IPR004675 Alkylhydroperoxidase AhpD core CLM_2198 IPR003779 Carboxymuconolactone decarboxylase-like CLM_2201 IPR030151 K(+)/H(+) antiporter NhaP CLM_2201 IPR005170 Transporter-associated domain CLM_2201 IPR006037 Regulator of K+ conductance, C-terminal CLM_2201 IPR023729 K(+)/H(+) antiporter NhaP2 CLM_2201 IPR038770 Sodium/solute symporter superfamily CLM_2201 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLM_2201 IPR036318 FAD-binding, type PCMH-like superfamily CLM_2201 IPR006153 Cation/H+ exchanger CLM_2202 IPR001404 Heat shock protein Hsp90 family CLM_2202 IPR037196 HSP90, C-terminal domain CLM_2202 IPR019805 Heat shock protein Hsp90, conserved site CLM_2202 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2202 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2202 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2203 IPR017261 DNA mismatch repair protein MutS/MSH CLM_2203 IPR007860 DNA mismatch repair protein MutS, connector domain CLM_2203 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2203 IPR005748 DNA mismatch repair protein MutS CLM_2203 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_2203 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CLM_2203 IPR036678 MutS, connector domain superfamily CLM_2203 IPR016151 DNA mismatch repair protein MutS, N-terminal CLM_2203 IPR007696 DNA mismatch repair protein MutS, core CLM_2203 IPR007861 DNA mismatch repair protein MutS, clamp CLM_2203 IPR000432 DNA mismatch repair protein MutS, C-terminal CLM_2204 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLM_2204 IPR011296 Phosphotransferase system, trehalose-specific IIBC component CLM_2204 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_2204 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_2204 IPR036878 Glucose permease domain IIB CLM_2204 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_2204 IPR003352 Phosphotransferase system, EIIC CLM_2205 IPR032091 Maltogenic Amylase, C-terminal CLM_2205 IPR013780 Glycosyl hydrolase, all-beta CLM_2205 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLM_2205 IPR017853 Glycoside hydrolase superfamily CLM_2205 IPR012769 Trehalose-6-phosphate hydrolase CLM_2206 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLM_2206 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2206 IPR011663 UbiC transcription regulator-associated CLM_2206 IPR036390 Winged helix DNA-binding domain superfamily CLM_2206 IPR000524 Transcription regulator HTH, GntR CLM_2206 IPR012770 Trehalose operon transcriptional repressor CLM_2207 IPR016152 Phosphotransferase/anion transporter CLM_2207 IPR006327 Phosphotransferase system, fructose IIC component CLM_2207 IPR002178 PTS EIIA type-2 domain CLM_2207 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CLM_2207 IPR013014 Phosphotransferase system, EIIC component, type 2 CLM_2207 IPR013011 Phosphotransferase system, EIIB component, type 2 CLM_2207 IPR036095 PTS system IIB component-like superfamily CLM_2207 IPR004715 Phosphotransferase system, IIA component fructose subfamily CLM_2207 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLM_2208 IPR016152 Phosphotransferase/anion transporter CLM_2208 IPR002178 PTS EIIA type-2 domain CLM_2208 IPR036095 PTS system IIB component-like superfamily CLM_2208 IPR013011 Phosphotransferase system, EIIB component, type 2 CLM_2208 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLM_2208 IPR013014 Phosphotransferase system, EIIC component, type 2 CLM_2208 IPR004715 Phosphotransferase system, IIA component fructose subfamily CLM_2208 IPR006327 Phosphotransferase system, fructose IIC component CLM_2208 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CLM_2209 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLM_2209 IPR017583 Tagatose/fructose phosphokinase CLM_2209 IPR029056 Ribokinase-like CLM_2209 IPR011611 Carbohydrate kinase PfkB CLM_2209 IPR005926 Tagatose-6-phosphate kinase CLM_2210 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY CLM_2210 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY CLM_2210 IPR000771 Fructose-bisphosphate aldolase, class-II CLM_2210 IPR013785 Aldolase-type TIM barrel CLM_2212 IPR016787 Uncharacterised conserved protein UCP021328 CLM_2215 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_2215 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_2215 IPR016205 Glycerol dehydrogenase CLM_2217 IPR003660 HAMP domain CLM_2217 IPR033479 Double Cache domain 1 CLM_2217 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2217 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_2217 IPR029151 Periplasmic sensor-like domain superfamily CLM_2219 IPR029066 PLP-binding barrel CLM_2219 IPR001608 Alanine racemase, N-terminal CLM_2221 IPR004104 Oxidoreductase, C-terminal CLM_2221 IPR036291 NAD(P)-binding domain superfamily CLM_2221 IPR000683 Oxidoreductase, N-terminal CLM_2222 IPR006273 Orotate phosphoribosyltransferase, bacterial CLM_2222 IPR029057 Phosphoribosyltransferase-like CLM_2222 IPR000836 Phosphoribosyltransferase domain CLM_2222 IPR023031 Orotate phosphoribosyltransferase CLM_2225 IPR012292 Globin/Protoglobin CLM_2225 IPR039435 Diguanylate cyclase DosC, globin sensor domain CLM_2225 IPR029787 Nucleotide cyclase CLM_2225 IPR000160 GGDEF domain CLM_2225 IPR009050 Globin-like superfamily CLM_2226 IPR005130 Serine dehydratase-like, alpha subunit CLM_2226 IPR021144 Uncharacterised protein family UPF0597 CLM_2228 IPR014014 RNA helicase, DEAD-box type, Q motif CLM_2228 IPR011545 DEAD/DEAH box helicase domain CLM_2228 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2228 IPR001650 Helicase, C-terminal CLM_2228 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2229 IPR035940 CAP superfamily CLM_2229 IPR014044 CAP domain CLM_2229 IPR014258 CAP domain, YkwD-like CLM_2230 IPR004839 Aminotransferase, class I/classII CLM_2230 IPR000524 Transcription regulator HTH, GntR CLM_2230 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2230 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2230 IPR036390 Winged helix DNA-binding domain superfamily CLM_2230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2231 IPR000620 EamA domain CLM_2232 IPR004839 Aminotransferase, class I/classII CLM_2232 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2232 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2232 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2232 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLM_2233 IPR003439 ABC transporter-like CLM_2233 IPR017871 ABC transporter, conserved site CLM_2233 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2233 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLM_2233 IPR003593 AAA+ ATPase domain CLM_2235 IPR018313 Solute-binding protein family 3, conserved site CLM_2235 IPR001320 Ionotropic glutamate receptor CLM_2235 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_2236 IPR018657 LarA-like, N-terminal CLM_2237 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CLM_2237 IPR000192 Aminotransferase class V domain CLM_2237 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_2237 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2237 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2237 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2238 IPR001707 Chloramphenicol acetyltransferase CLM_2238 IPR018372 Chloramphenicol acetyltransferase, active site CLM_2238 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_2243 IPR000109 Proton-dependent oligopeptide transporter family CLM_2243 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLM_2243 IPR005279 Dipeptide/tripeptide permease CLM_2243 IPR020846 Major facilitator superfamily domain CLM_2243 IPR036259 MFS transporter superfamily CLM_2244 IPR036259 MFS transporter superfamily CLM_2244 IPR005279 Dipeptide/tripeptide permease CLM_2244 IPR000109 Proton-dependent oligopeptide transporter family CLM_2244 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLM_2244 IPR020846 Major facilitator superfamily domain CLM_2245 IPR001714 Peptidase M24, methionine aminopeptidase CLM_2245 IPR000994 Peptidase M24 CLM_2245 IPR000587 Creatinase, N-terminal CLM_2245 IPR036005 Creatinase/aminopeptidase-like CLM_2245 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CLM_2245 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2246 IPR005945 Proline-specific peptidase CLM_2246 IPR002410 Peptidase S33 CLM_2246 IPR000073 Alpha/beta hydrolase fold-1 CLM_2246 IPR029058 Alpha/Beta hydrolase fold CLM_2248 IPR037272 Sodium:neurotransmitter symporter superfamily CLM_2248 IPR000175 Sodium:neurotransmitter symporter CLM_2249 IPR000524 Transcription regulator HTH, GntR CLM_2249 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2249 IPR004839 Aminotransferase, class I/classII CLM_2249 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2249 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2249 IPR036390 Winged helix DNA-binding domain superfamily CLM_2249 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2250 IPR003719 Phenazine biosynthesis PhzF protein CLM_2254 IPR002035 von Willebrand factor, type A CLM_2254 IPR036465 von Willebrand factor A-like domain superfamily CLM_2256 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2257 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2257 IPR010354 Oleate hydratase CLM_2262 IPR000727 Target SNARE coiled-coil homology domain CLM_2262 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2262 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_2262 IPR003660 HAMP domain CLM_2262 IPR004090 Chemotaxis methyl-accepting receptor CLM_2268 IPR005881 Serine O-acetyltransferase CLM_2268 IPR001451 Hexapeptide repeat CLM_2268 IPR018357 Hexapeptide transferase, conserved site CLM_2268 IPR011004 Trimeric LpxA-like superfamily CLM_2268 IPR010493 Serine acetyltransferase, N-terminal CLM_2268 IPR042122 Serine acetyltransferase, N-terminal domain superfamily CLM_2269 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2269 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_2269 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2271 IPR005835 Nucleotidyl transferase domain CLM_2271 IPR005908 Glucose-1-phosphate thymidylyltransferase, long form CLM_2271 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2272 IPR016040 NAD(P)-binding domain CLM_2272 IPR005888 dTDP-glucose 4,6-dehydratase CLM_2272 IPR036291 NAD(P)-binding domain superfamily CLM_2277 IPR029058 Alpha/Beta hydrolase fold CLM_2279 IPR006326 UDP-glycosyltransferase, MGT CLM_2279 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase CLM_2289 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_2289 IPR007730 Sporulation-like domain CLM_2289 IPR036680 Sporulation-like domain superfamily CLM_2290 IPR006480 Bacteriophage holin family CLM_2293 IPR003173 Transcriptional coactivator p15 (PC4) CLM_2293 IPR017154 Uncharacterised conserved protein UCP037246 CLM_2296 IPR003356 DNA methylase, adenine-specific CLM_2296 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2296 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily CLM_2298 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2298 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2298 IPR001650 Helicase, C-terminal CLM_2304 IPR016040 NAD(P)-binding domain CLM_2304 IPR036291 NAD(P)-binding domain superfamily CLM_2305 IPR001173 Glycosyltransferase 2-like CLM_2305 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2306 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2306 IPR001173 Glycosyltransferase 2-like CLM_2310 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2310 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_2310 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2310 IPR000795 Transcription factor, GTP-binding domain CLM_2310 IPR035650 Tetracycline resistance protein, C-terminal CLM_2310 IPR005225 Small GTP-binding protein domain CLM_2310 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2310 IPR031157 Tr-type G domain, conserved site CLM_2310 IPR041095 Elongation Factor G, domain II CLM_2310 IPR000640 Elongation factor EFG, domain V-like CLM_2310 IPR005517 Translation elongation factor EFG/EF2, domain IV CLM_2310 IPR035647 EF-G domain III/V-like CLM_2312 IPR023299 P-type ATPase, cytoplasmic domain N CLM_2312 IPR027256 P-type ATPase, subfamily IB CLM_2312 IPR001757 P-type ATPase CLM_2312 IPR036163 Heavy metal-associated domain superfamily CLM_2312 IPR006121 Heavy metal-associated domain, HMA CLM_2312 IPR017969 Heavy-metal-associated, conserved site CLM_2312 IPR008250 P-type ATPase, A domain superfamily CLM_2312 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_2312 IPR018303 P-type ATPase, phosphorylation site CLM_2312 IPR036412 HAD-like superfamily CLM_2312 IPR023214 HAD superfamily CLM_2313 IPR003735 Metal-sensitive transcriptional repressor CLM_2313 IPR038390 Metal-sensitive transcriptional repressor superfamily CLM_2314 IPR000249 Microcompartment protein, bacteria CLM_2314 IPR037233 CcmK-like superfamily CLM_2314 IPR020808 Bacterial microcompartments protein, conserved site CLM_2315 IPR008300 Phosphate propanoyltransferase CLM_2316 IPR015590 Aldehyde dehydrogenase domain CLM_2316 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase CLM_2316 IPR016162 Aldehyde dehydrogenase, N-terminal CLM_2316 IPR016161 Aldehyde/histidinol dehydrogenase CLM_2316 IPR016163 Aldehyde dehydrogenase, C-terminal CLM_2316 IPR039697 Iron-type alcohol dehydrogenase-like CLM_2316 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_2316 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain CLM_2316 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_2317 IPR000249 Microcompartment protein, bacteria CLM_2317 IPR020808 Bacterial microcompartments protein, conserved site CLM_2317 IPR037233 CcmK-like superfamily CLM_2318 IPR011051 RmlC-like cupin domain superfamily CLM_2318 IPR014710 RmlC-like jelly roll fold CLM_2318 IPR010424 Ethanolamine utilisation EutQ CLM_2321 IPR013366 Ethanolamine utilisation EutJ CLM_2323 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV CLM_2323 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2324 IPR037233 CcmK-like superfamily CLM_2324 IPR000249 Microcompartment protein, bacteria CLM_2324 IPR009307 Ethanolamine utilisation EutS CLM_2325 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2325 IPR013785 Aldolase-type TIM barrel CLM_2325 IPR040074 BssD/PflA/YjjW CLM_2325 IPR030905 Choline TMA-lyase-activating enzyme CLM_2325 IPR034457 Organic radical-activating enzymes CLM_2325 IPR012839 Organic radical enzyme activase CLM_2325 IPR001989 Radical-activating enzyme, conserved site CLM_2325 IPR007197 Radical SAM CLM_2325 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2326 IPR004184 Pyruvate formate lyase domain CLM_2326 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CLM_2326 IPR030897 Choline trimethylamine-lyase CLM_2326 IPR001150 Glycine radical domain CLM_2327 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase CLM_2327 IPR015590 Aldehyde dehydrogenase domain CLM_2327 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_2327 IPR016162 Aldehyde dehydrogenase, N-terminal CLM_2327 IPR016163 Aldehyde dehydrogenase, C-terminal CLM_2327 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_2327 IPR016161 Aldehyde/histidinol dehydrogenase CLM_2327 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain CLM_2327 IPR039697 Iron-type alcohol dehydrogenase-like CLM_2328 IPR020808 Bacterial microcompartments protein, conserved site CLM_2328 IPR037233 CcmK-like superfamily CLM_2328 IPR000249 Microcompartment protein, bacteria CLM_2329 IPR000249 Microcompartment protein, bacteria CLM_2329 IPR037233 CcmK-like superfamily CLM_2329 IPR020808 Bacterial microcompartments protein, conserved site CLM_2332 IPR000551 MerR-type HTH domain CLM_2332 IPR012925 TipAS antibiotic-recognition domain CLM_2332 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CLM_2332 IPR009061 Putative DNA-binding domain superfamily CLM_2333 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLM_2333 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLM_2333 IPR039697 Iron-type alcohol dehydrogenase-like CLM_2335 IPR011701 Major facilitator superfamily CLM_2335 IPR020846 Major facilitator superfamily domain CLM_2335 IPR036259 MFS transporter superfamily CLM_2335 IPR004747 Cyanate transport system protein CLM_2336 IPR036390 Winged helix DNA-binding domain superfamily CLM_2336 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2336 IPR000524 Transcription regulator HTH, GntR CLM_2336 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_2336 IPR011711 GntR, C-terminal CLM_2341 IPR035948 YwqG-like superfamily CLM_2341 IPR015315 Protein of unknown function DUF1963 CLM_2344 IPR023365 Sortase domain superfamily CLM_2344 IPR041999 Sortase D, type 1 CLM_2344 IPR005754 Sortase family CLM_2346 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2346 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2346 IPR003660 HAMP domain CLM_2346 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2346 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2346 IPR005467 Histidine kinase domain CLM_2346 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_2347 IPR011006 CheY-like superfamily CLM_2347 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2347 IPR016032 Signal transduction response regulator, C-terminal effector CLM_2347 IPR001789 Signal transduction response regulator, receiver domain CLM_2347 IPR039420 Transcriptional regulatory protein WalR-like CLM_2347 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2350 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2350 IPR005978 Nodulation ABC transporter, NodI CLM_2350 IPR015851 ABC transporter, NodI CLM_2350 IPR017871 ABC transporter, conserved site CLM_2350 IPR003439 ABC transporter-like CLM_2350 IPR003593 AAA+ ATPase domain CLM_2351 IPR003838 ABC transporter permease protein domain CLM_2351 IPR027022 ABC transporter permease protein, BceB-type CLM_2352 IPR002938 FAD-binding domain CLM_2352 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2353 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_2353 IPR001387 Cro/C1-type helix-turn-helix domain CLM_2355 IPR013154 Alcohol dehydrogenase, N-terminal CLM_2355 IPR036291 NAD(P)-binding domain superfamily CLM_2355 IPR020843 Polyketide synthase, enoylreductase domain CLM_2355 IPR011032 GroES-like superfamily CLM_2355 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLM_2355 IPR013149 Alcohol dehydrogenase, C-terminal CLM_2355 IPR004627 L-threonine 3-dehydrogenase CLM_2357 IPR030963 3-dehydroquinate synthase family CLM_2357 IPR030960 3-dehydroquinate synthase domain CLM_2358 IPR027022 ABC transporter permease protein, BceB-type CLM_2358 IPR003838 ABC transporter permease protein domain CLM_2359 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2359 IPR003439 ABC transporter-like CLM_2359 IPR003593 AAA+ ATPase domain CLM_2361 IPR036634 PRD domain superfamily CLM_2361 IPR002178 PTS EIIA type-2 domain CLM_2361 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2361 IPR016152 Phosphotransferase/anion transporter CLM_2361 IPR007737 Mga helix-turn-helix domain CLM_2361 IPR013196 Helix-turn-helix, type 11 CLM_2361 IPR013011 Phosphotransferase system, EIIB component, type 2 CLM_2361 IPR036095 PTS system IIB component-like superfamily CLM_2361 IPR011608 PRD domain CLM_2362 IPR004703 Phosphotransferase system, sugar-specific permease component CLM_2363 IPR036095 PTS system IIB component-like superfamily CLM_2363 IPR013011 Phosphotransferase system, EIIB component, type 2 CLM_2363 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLM_2364 IPR016152 Phosphotransferase/anion transporter CLM_2364 IPR002178 PTS EIIA type-2 domain CLM_2365 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial CLM_2365 IPR018225 Transaldolase, active site CLM_2365 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase CLM_2365 IPR013785 Aldolase-type TIM barrel CLM_2365 IPR001585 Transaldolase/Fructose-6-phosphate aldolase CLM_2365 IPR022999 Transaldolase type 3B, putative CLM_2369 IPR001451 Hexapeptide repeat CLM_2369 IPR018357 Hexapeptide transferase, conserved site CLM_2369 IPR024688 Maltose/galactoside acetyltransferase CLM_2369 IPR011004 Trimeric LpxA-like superfamily CLM_2372 IPR036259 MFS transporter superfamily CLM_2372 IPR000109 Proton-dependent oligopeptide transporter family CLM_2372 IPR020846 Major facilitator superfamily domain CLM_2372 IPR005279 Dipeptide/tripeptide permease CLM_2372 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLM_2373 IPR041698 Methyltransferase domain 25 CLM_2373 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2374 IPR029442 GyrI-like small molecule binding domain CLM_2374 IPR020449 Transcription regulator HTH, AraC- type CLM_2374 IPR010499 Bacterial transcription activator, effector binding CLM_2374 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2374 IPR018062 HTH domain AraC-type, conserved site CLM_2374 IPR009057 Homeobox-like domain superfamily CLM_2374 IPR018060 DNA binding HTH domain, AraC-type CLM_2376 IPR023753 FAD/NAD(P)-binding domain CLM_2376 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2376 IPR013785 Aldolase-type TIM barrel CLM_2376 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CLM_2382 IPR003719 Phenazine biosynthesis PhzF protein CLM_2383 IPR004839 Aminotransferase, class I/classII CLM_2383 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2383 IPR000524 Transcription regulator HTH, GntR CLM_2383 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2383 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2383 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2383 IPR036390 Winged helix DNA-binding domain superfamily CLM_2385 IPR001387 Cro/C1-type helix-turn-helix domain CLM_2385 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_2386 IPR013094 Alpha/beta hydrolase fold-3 CLM_2386 IPR029058 Alpha/Beta hydrolase fold CLM_2387 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_2387 IPR006680 Amidohydrolase-related CLM_2387 IPR023512 Deaminase MtaD/DadD CLM_2387 IPR032466 Metal-dependent hydrolase CLM_2388 IPR006043 Xanthine/uracil/vitamin C permease CLM_2388 IPR017588 Uric acid permease UacT-like CLM_2388 IPR006042 Xanthine/uracil permease CLM_2391 IPR002293 Amino acid/polyamine transporter I CLM_2393 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_2393 IPR008275 CoA enzyme activase CLM_2395 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2395 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2395 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal CLM_2395 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal CLM_2395 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2395 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_2395 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_2395 IPR001308 Electron transfer flavoprotein alpha subunit/FixB CLM_2396 IPR012255 Electron transfer flavoprotein, beta subunit CLM_2396 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2396 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_2396 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site CLM_2396 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal CLM_2397 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLM_2397 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLM_2397 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLM_2397 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLM_2397 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLM_2397 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLM_2397 IPR006089 Acyl-CoA dehydrogenase, conserved site CLM_2398 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2399 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2400 IPR003673 CoA-transferase family III CLM_2400 IPR023606 CoA-transferase family III domain superfamily CLM_2403 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_2403 IPR008275 CoA enzyme activase CLM_2404 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2404 IPR029151 Periplasmic sensor-like domain superfamily CLM_2407 IPR037523 Vicinal oxygen chelate (VOC) domain CLM_2407 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_2407 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_2407 IPR037434 Fosfomycin resistance protein FosX CLM_2408 IPR003474 Gluconate transporter CLM_2409 IPR005255 PdxA family CLM_2410 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily CLM_2410 IPR010737 Four-carbon acid sugar kinase, N-terminal domain CLM_2410 IPR031475 Nucleotide-binding C-terminal domain CLM_2410 IPR042213 Nucleotide-binding, C-terminal domain superfamily CLM_2411 IPR014036 DeoR C-terminal sensor domain CLM_2411 IPR001034 DeoR-type HTH domain CLM_2411 IPR037171 NagB/RpiA transferase-like CLM_2411 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLM_2411 IPR036390 Winged helix DNA-binding domain superfamily CLM_2415 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_2415 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_2415 IPR013572 Transcription regulator MAATS, C-terminal CLM_2415 IPR001647 DNA-binding HTH domain, TetR-type CLM_2415 IPR009057 Homeobox-like domain superfamily CLM_2419 IPR000387 Tyrosine specific protein phosphatases domain CLM_2419 IPR016130 Protein-tyrosine phosphatase, active site CLM_2419 IPR029021 Protein-tyrosine phosphatase-like CLM_2420 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLM_2420 IPR011032 GroES-like superfamily CLM_2420 IPR036291 NAD(P)-binding domain superfamily CLM_2420 IPR020843 Polyketide synthase, enoylreductase domain CLM_2420 IPR013149 Alcohol dehydrogenase, C-terminal CLM_2420 IPR013154 Alcohol dehydrogenase, N-terminal CLM_2421 IPR011254 Prismane-like superfamily CLM_2421 IPR016101 CO dehydrogenase, alpha-bundle CLM_2421 IPR016099 Prismane-like, alpha/beta-sandwich CLM_2421 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase CLM_2421 IPR010047 Ni-containing CO dehydrogenase CLM_2424 IPR000688 Hydrogenase maturation factor HypA/HybF CLM_2424 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site CLM_2425 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CLM_2425 IPR004392 Hydrogenase maturation factor HypB CLM_2425 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2428 IPR000808 Mrp, conserved site CLM_2428 IPR019591 Mrp/NBP35 ATP-binding protein CLM_2428 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2428 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLM_2431 IPR006665 OmpA-like domain CLM_2431 IPR036737 OmpA-like domain superfamily CLM_2431 IPR025713 Motility protein B, N-terminal domain CLM_2432 IPR000540 Flagellar motor protein MotA, conserved site CLM_2432 IPR002898 MotA/TolQ/ExbB proton channel CLM_2434 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_2434 IPR007253 Putative cell wall binding repeat 2 CLM_2437 IPR004813 Oligopeptide transporter, OPT superfamily CLM_2437 IPR004814 Oligopeptide transporter OPT CLM_2438 IPR001160 Peptidase M20C, Xaa-His dipeptidase CLM_2438 IPR002933 Peptidase M20 CLM_2438 IPR011650 Peptidase M20, dimerisation domain CLM_2439 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2439 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2439 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2439 IPR026273 Low specificity L-threonine aldolase CLM_2439 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase CLM_2440 IPR018193 Glycerate kinase, flavodoxin-like fold CLM_2440 IPR018197 Glycerate kinase, restriction-enzyme-like fold CLM_2440 IPR036129 Glycerate kinase superfamily CLM_2440 IPR004381 Glycerate kinase CLM_2443 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLM_2443 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 IPR036291 NAD(P)-binding domain superfamily CLM_2444 IPR032688 ABC-2 family transporter protein CLM_2445 IPR003439 ABC transporter-like CLM_2445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2445 IPR003593 AAA+ ATPase domain CLM_2445 IPR017871 ABC transporter, conserved site CLM_2446 IPR016181 Acyl-CoA N-acyltransferase CLM_2446 IPR000182 GNAT domain CLM_2447 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_2447 IPR036390 Winged helix DNA-binding domain superfamily CLM_2447 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2447 IPR000835 MarR-type HTH domain CLM_2449 IPR021257 Protein of unknown function DUF2809 CLM_2451 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase CLM_2451 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2451 IPR006076 FAD dependent oxidoreductase CLM_2451 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_2451 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit CLM_2451 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLM_2452 IPR009061 Putative DNA-binding domain superfamily CLM_2452 IPR011789 Cu(I)-responsive transcriptional regulator CLM_2452 IPR015358 Transcription regulator MerR, DNA binding CLM_2452 IPR000551 MerR-type HTH domain CLM_2453 IPR002293 Amino acid/polyamine transporter I CLM_2454 IPR002589 Macro domain CLM_2457 IPR000835 MarR-type HTH domain CLM_2457 IPR012712 HTH-type transcriptional regulator HpaR/FarR CLM_2457 IPR036390 Winged helix DNA-binding domain superfamily CLM_2457 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_2457 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2460 IPR029056 Ribokinase-like CLM_2460 IPR000417 Hydroxyethylthiazole kinase CLM_2465 IPR001279 Metallo-beta-lactamase CLM_2465 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2467 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2467 IPR004472 Dethiobiotin synthase BioD CLM_2468 IPR013785 Aldolase-type TIM barrel CLM_2468 IPR010722 Biotin and thiamin synthesis-associated domain CLM_2468 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB CLM_2468 IPR024177 Biotin synthase CLM_2468 IPR006638 Elp3/MiaB/NifB CLM_2468 IPR007197 Radical SAM CLM_2469 IPR003784 BioY protein CLM_2472 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2472 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CLM_2472 IPR000994 Peptidase M24 CLM_2472 IPR000587 Creatinase, N-terminal CLM_2472 IPR036005 Creatinase/aminopeptidase-like CLM_2473 IPR020846 Major facilitator superfamily domain CLM_2473 IPR036259 MFS transporter superfamily CLM_2473 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLM_2473 IPR000109 Proton-dependent oligopeptide transporter family CLM_2473 IPR005279 Dipeptide/tripeptide permease CLM_2498 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_2514 IPR038559 Clostridium phage phiCD119, XkdN superfamily CLM_2514 IPR014986 Clostridium phage phiCD119, XkdN CLM_2529 IPR035412 Phage terminase large subunit, N-terminal CLM_2529 IPR035413 Phage terminase large subunit, C-terminal CLM_2529 IPR006437 Bacteriophage terminase, large subunit CLM_2530 IPR018925 Phage terminase small subunit CLM_2533 IPR008964 Invasin/intimin cell-adhesion fragments CLM_2533 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_2533 IPR003343 Bacterial Ig-like, group 2 CLM_2538 IPR012263 Adenine modification methylase, M.EcoRV-type CLM_2538 IPR012327 D12 class N6 adenine-specific DNA methyltransferase CLM_2538 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2538 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLM_2538 IPR023095 Adenine-specific methyltransferase, domain 2 CLM_2540 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_2540 IPR013762 Integrase-like, catalytic domain superfamily CLM_2540 IPR002104 Integrase, catalytic domain CLM_2540 IPR010998 Integrase/recombinase, N-terminal CLM_2540 IPR004107 Integrase, SAM-like, N-terminal CLM_2540 IPR011931 Tyrosine recombinase XerC CLM_2540 IPR023009 Tyrosine recombinase XerC/XerD CLM_2558 IPR040678 AbrB, C-terminal CLM_2558 IPR037914 SpoVT-AbrB domain superfamily CLM_2558 IPR007159 SpoVT-AbrB domain CLM_2562 IPR003593 AAA+ ATPase domain CLM_2562 IPR002611 IstB-like ATP-binding protein CLM_2562 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2573 IPR018876 Bacteriophage P22, antirepressor protein, C-terminal CLM_2573 IPR013557 AntA/AntB antirepressor CLM_2576 IPR010359 IrrE N-terminal-like domain CLM_2578 IPR006118 Recombinase, conserved site CLM_2578 IPR006120 Resolvase, HTH domain CLM_2578 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CLM_2578 IPR006119 Resolvase, N-terminal catalytic domain CLM_2578 IPR009057 Homeobox-like domain superfamily CLM_2583 IPR028427 Peptide methionine sulfoxide reductase CLM_2583 IPR002579 Peptide methionine sulphoxide reductase MrsB CLM_2583 IPR011057 Mss4-like superfamily CLM_2584 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CLM_2584 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CLM_2584 IPR001189 Manganese/iron superoxide dismutase CLM_2584 IPR019833 Manganese/iron superoxide dismutase, binding site CLM_2584 IPR019832 Manganese/iron superoxide dismutase, C-terminal CLM_2584 IPR019831 Manganese/iron superoxide dismutase, N-terminal CLM_2585 IPR003593 AAA+ ATPase domain CLM_2585 IPR011527 ABC transporter type 1, transmembrane domain CLM_2585 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_2585 IPR003439 ABC transporter-like CLM_2585 IPR017871 ABC transporter, conserved site CLM_2585 IPR011917 ABC transporter, lipid A export, MsbA CLM_2585 IPR039421 Type I protein exporter CLM_2585 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2586 IPR003439 ABC transporter-like CLM_2586 IPR011917 ABC transporter, lipid A export, MsbA CLM_2586 IPR003593 AAA+ ATPase domain CLM_2586 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2586 IPR039421 Type I protein exporter CLM_2586 IPR011527 ABC transporter type 1, transmembrane domain CLM_2586 IPR017871 ABC transporter, conserved site CLM_2586 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_2591 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2591 IPR017871 ABC transporter, conserved site CLM_2591 IPR003593 AAA+ ATPase domain CLM_2591 IPR003439 ABC transporter-like CLM_2592 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2592 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2592 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2592 IPR005467 Histidine kinase domain CLM_2592 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2592 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_2593 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2593 IPR039420 Transcriptional regulatory protein WalR-like CLM_2593 IPR016032 Signal transduction response regulator, C-terminal effector CLM_2593 IPR001789 Signal transduction response regulator, receiver domain CLM_2593 IPR011006 CheY-like superfamily CLM_2593 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2597 IPR036821 Peptide deformylase superfamily CLM_2597 IPR023635 Peptide deformylase CLM_2599 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria CLM_2602 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2602 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp CLM_2602 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP CLM_2616 IPR023068 CCA-adding enzyme, firmicutes CLM_2616 IPR002646 Poly A polymerase, head domain CLM_2616 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CLM_2616 IPR032810 CCA-adding enzyme, C-terminal CLM_2622 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2622 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2622 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_2622 IPR003660 HAMP domain CLM_2622 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2622 IPR005467 Histidine kinase domain CLM_2622 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2623 IPR039420 Transcriptional regulatory protein WalR-like CLM_2623 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2623 IPR001789 Signal transduction response regulator, receiver domain CLM_2623 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2623 IPR011006 CheY-like superfamily CLM_2626 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2626 IPR002611 IstB-like ATP-binding protein CLM_2626 IPR003593 AAA+ ATPase domain CLM_2628 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_2628 IPR001387 Cro/C1-type helix-turn-helix domain CLM_2631 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_2641 IPR006949 Baseplate protein J-like CLM_2650 IPR038628 XkdM-like superfamily CLM_2650 IPR018989 Phage tail tube protein CLM_2651 IPR020287 Tail sheath protein, C-terminal domain CLM_2651 IPR035089 Tail sheath protein, subtilisin-like domain CLM_2651 IPR035326 Phage tail sheath protein, beta-sandwich domain CLM_2664 IPR005335 Terminase small subunit CLM_2670 IPR008144 Guanylate kinase-like domain CLM_2670 IPR017665 Guanylate kinase CLM_2670 IPR020590 Guanylate kinase, conserved site CLM_2670 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2670 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CLM_2673 IPR019760 DNA-directed DNA polymerase, family A, conserved site CLM_2673 IPR015361 Taq polymerase, thermostable, exonuclease region CLM_2673 IPR036397 Ribonuclease H superfamily CLM_2673 IPR012337 Ribonuclease H-like superfamily CLM_2673 IPR008918 Helix-hairpin-helix motif, class 2 CLM_2673 IPR002298 DNA polymerase A CLM_2673 IPR018320 DNA polymerase 1 CLM_2673 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CLM_2673 IPR002421 5'-3' exonuclease, N-terminal CLM_2673 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CLM_2673 IPR029060 PIN-like domain superfamily CLM_2673 IPR020045 DNA polymerase I-like, H3TH domain CLM_2673 IPR001098 DNA-directed DNA polymerase, family A, palm domain CLM_2680 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2680 IPR014322 RNA polymerase sigma-B/F/G type CLM_2680 IPR014236 RNA polymerase sigma-F type CLM_2680 IPR000943 RNA polymerase sigma-70 CLM_2680 IPR007627 RNA polymerase sigma-70 region 2 CLM_2680 IPR007624 RNA polymerase sigma-70 region 3 CLM_2680 IPR013325 RNA polymerase sigma factor, region 2 CLM_2680 IPR014284 RNA polymerase sigma-70 like domain CLM_2680 IPR007630 RNA polymerase sigma-70 region 4 CLM_2680 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2687 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CLM_2687 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2687 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO CLM_2689 IPR007211 Protein of unknown function DUF378 CLM_2690 IPR000032 Phosphocarrier protein HPr-like CLM_2690 IPR035895 HPr-like superfamily CLM_2690 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CLM_2690 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CLM_2691 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2691 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2691 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLM_2691 IPR004839 Aminotransferase, class I/classII CLM_2691 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2692 IPR000620 EamA domain CLM_2692 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE CLM_2692 IPR000390 Small multidrug resistance protein family CLM_2694 IPR039653 Prenyltransferase CLM_2694 IPR000537 UbiA prenyltransferase family CLM_2695 IPR007347 Sporulation stage V, protein S CLM_2695 IPR036882 Alba-like domain superfamily CLM_2696 IPR022711 Ribonuclease Y, N-terminal CLM_2696 IPR036612 K Homology domain, type 1 superfamily CLM_2696 IPR004088 K Homology domain, type 1 CLM_2696 IPR004087 K Homology domain CLM_2696 IPR006675 HDIG domain CLM_2696 IPR006674 HD domain CLM_2696 IPR017705 Ribonuclease Y CLM_2696 IPR003607 HD/PDEase domain CLM_2697 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface CLM_2697 IPR003593 AAA+ ATPase domain CLM_2697 IPR013765 DNA recombination and repair protein RecA CLM_2697 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CLM_2697 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2697 IPR020584 DNA recombination/repair protein RecA, conserved site CLM_2697 IPR023400 DNA recombination and repair protein RecA, C-terminal CLM_2698 IPR000462 CDP-alcohol phosphatidyltransferase CLM_2698 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CLM_2699 IPR023404 Radical SAM, alpha/beta horseshoe CLM_2699 IPR007197 Radical SAM CLM_2699 IPR041582 RimO, TRAM domain CLM_2699 IPR005840 Ribosomal protein S12 methylthiotransferase RimO CLM_2699 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLM_2699 IPR020612 Methylthiotransferase, conserved site CLM_2699 IPR005839 Methylthiotransferase CLM_2699 IPR006638 Elp3/MiaB/NifB CLM_2699 IPR013848 Methylthiotransferase, N-terminal CLM_2699 IPR002792 TRAM domain CLM_2700 IPR041027 FtsK alpha domain CLM_2700 IPR002543 FtsK domain CLM_2700 IPR036390 Winged helix DNA-binding domain superfamily CLM_2700 IPR018541 FtsK gamma domain CLM_2700 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2700 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2701 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_2701 IPR029045 ClpP/crotonase-like domain superfamily CLM_2702 IPR002912 ACT domain CLM_2702 IPR001048 Aspartate/glutamate/uridylate kinase CLM_2702 IPR005260 Aspartate kinase, monofunctional class CLM_2702 IPR036393 Acetylglutamate kinase-like superfamily CLM_2702 IPR001341 Aspartate kinase CLM_2702 IPR018042 Aspartate kinase, conserved site CLM_2702 IPR027795 CASTOR, ACT domain CLM_2704 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLM_2704 IPR011765 Peptidase M16, N-terminal CLM_2704 IPR001431 Peptidase M16, zinc-binding site CLM_2704 IPR007863 Peptidase M16, C-terminal CLM_2705 IPR022967 RNA-binding domain, S1 CLM_2705 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2705 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily CLM_2705 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain CLM_2705 IPR027408 PNPase/RNase PH domain superfamily CLM_2705 IPR012162 Polyribonucleotide nucleotidyltransferase CLM_2705 IPR004087 K Homology domain CLM_2705 IPR036612 K Homology domain, type 1 superfamily CLM_2705 IPR004088 K Homology domain, type 1 CLM_2705 IPR001247 Exoribonuclease, phosphorolytic domain 1 CLM_2705 IPR036345 Exoribonuclease, PH domain 2 superfamily CLM_2705 IPR015847 Exoribonuclease, phosphorolytic domain 2 CLM_2705 IPR012340 Nucleic acid-binding, OB-fold CLM_2705 IPR003029 S1 domain CLM_2706 IPR009068 S15/NS1, RNA-binding CLM_2706 IPR000589 Ribosomal protein S15 CLM_2706 IPR005290 Ribosomal protein S15, bacterial-type CLM_2707 IPR023465 Riboflavin kinase domain superfamily CLM_2707 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2707 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CLM_2707 IPR002606 Riboflavin kinase, bacterial CLM_2707 IPR023468 Riboflavin kinase CLM_2707 IPR015864 FAD synthetase CLM_2708 IPR032819 tRNA pseudouridylate synthase B, C-terminal CLM_2708 IPR014780 tRNA pseudouridine synthase II, TruB CLM_2708 IPR002501 Pseudouridine synthase II, N-terminal CLM_2708 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_2709 IPR001667 DDH domain CLM_2709 IPR038763 DHH phosphoesterase superfamily CLM_2709 IPR003156 DHHA1 domain CLM_2710 IPR000238 Ribosome-binding factor A CLM_2710 IPR020053 Ribosome-binding factor A, conserved site CLM_2710 IPR023799 Ribosome-binding factor A domain superfamily CLM_2710 IPR015946 K homology domain-like, alpha/beta CLM_2711 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2711 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CLM_2711 IPR015760 Translation initiation factor IF- 2 CLM_2711 IPR023115 Translation initiation factor IF- 2, domain 3 CLM_2711 IPR000795 Transcription factor, GTP-binding domain CLM_2711 IPR005225 Small GTP-binding protein domain CLM_2711 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2711 IPR000178 Translation initiation factor aIF-2, bacterial-like CLM_2711 IPR006847 Translation initiation factor IF-2, N-terminal CLM_2712 IPR029064 50S ribosomal protein L30e-like CLM_2712 IPR039109 Ribosomal protein L30/YlxQ CLM_2712 IPR004037 Ribosomal protein L7Ae conserved site CLM_2712 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CLM_2712 IPR039107 Ribosomal protein YlxQ CLM_2713 IPR037465 Uncharacterized protein YlxR CLM_2713 IPR035931 YlxR-like superfamily CLM_2713 IPR007393 Domain of unknown function DUF448 CLM_2714 IPR010213 Transcription termination factor NusA CLM_2714 IPR003029 S1 domain CLM_2714 IPR022967 RNA-binding domain, S1 CLM_2714 IPR036555 NusA, N-terminal domain superfamily CLM_2714 IPR030842 Transcription termination/antitermination protein NusA, bacterial CLM_2714 IPR012340 Nucleic acid-binding, OB-fold CLM_2714 IPR009019 K homology domain superfamily, prokaryotic type CLM_2714 IPR025249 KH domain, NusA-like CLM_2714 IPR015946 K homology domain-like, alpha/beta CLM_2714 IPR004087 K Homology domain CLM_2714 IPR013735 Transcription factor NusA, N-terminal CLM_2715 IPR003728 Ribosome maturation factor RimP CLM_2715 IPR028998 Ribosome maturation factor RimP, C-terminal CLM_2715 IPR035956 RimP, N-terminal domain superfamily CLM_2715 IPR028989 Ribosome maturation factor RimP, N-terminal CLM_2715 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CLM_2716 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_2716 IPR012337 Ribonuclease H-like superfamily CLM_2716 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type CLM_2716 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_2716 IPR004013 PHP domain CLM_2716 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_2716 IPR012340 Nucleic acid-binding, OB-fold CLM_2716 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CLM_2716 IPR029460 DNA polymerase, helix-hairpin-helix motif CLM_2716 IPR024754 DNA polymerase III polC-like, N-terminal domain II CLM_2716 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CLM_2716 IPR036397 Ribonuclease H superfamily CLM_2716 IPR040982 DNA polymerase III alpha subunit finger domain CLM_2717 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type CLM_2717 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial CLM_2717 IPR011005 Dihydropteroate synthase-like CLM_2718 IPR008915 Peptidase M50 CLM_2718 IPR036034 PDZ superfamily CLM_2718 IPR041489 PDZ domain 6 CLM_2718 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CLM_2719 IPR036169 DXP reductoisomerase, C-terminal domain superfamily CLM_2719 IPR026877 DXP reductoisomerase C-terminal domain CLM_2719 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal CLM_2719 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLM_2719 IPR036291 NAD(P)-binding domain superfamily CLM_2719 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal CLM_2723 IPR000374 Phosphatidate cytidylyltransferase CLM_2724 IPR036424 Decaprenyl diphosphate synthase-like superfamily CLM_2724 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CLM_2724 IPR001441 Decaprenyl diphosphate synthase-like CLM_2725 IPR036191 RRF superfamily CLM_2725 IPR002661 Ribosome recycling factor CLM_2725 IPR023584 Ribosome recycling factor domain CLM_2726 IPR015963 Uridylate kinase, bacteria CLM_2726 IPR036393 Acetylglutamate kinase-like superfamily CLM_2726 IPR001048 Aspartate/glutamate/uridylate kinase CLM_2726 IPR011817 Uridylate kinase CLM_2727 IPR001816 Translation elongation factor EFTs/EF1B CLM_2727 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CLM_2727 IPR009060 UBA-like superfamily CLM_2727 IPR036402 Elongation factor Ts, dimerisation domain superfamily CLM_2727 IPR018101 Translation elongation factor Ts, conserved site CLM_2728 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CLM_2728 IPR018130 Ribosomal protein S2, conserved site CLM_2728 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid CLM_2728 IPR001865 Ribosomal protein S2 CLM_2729 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY CLM_2729 IPR029016 GAF-like domain superfamily CLM_2729 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal CLM_2729 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal CLM_2729 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2729 IPR036390 Winged helix DNA-binding domain superfamily CLM_2730 IPR028612 DNA topoisomerase I, type IA CLM_2730 IPR005733 DNA topoisomerase I, bacterial-type CLM_2730 IPR006171 TOPRIM domain CLM_2730 IPR003601 DNA topoisomerase, type IA, domain 2 CLM_2730 IPR034149 DNA topoisomerase 1, TOPRIM domain CLM_2730 IPR000380 DNA topoisomerase, type IA CLM_2730 IPR023405 DNA topoisomerase, type IA, core domain CLM_2730 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLM_2730 IPR013498 DNA topoisomerase, type IA, zn finger CLM_2730 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLM_2730 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLM_2730 IPR013497 DNA topoisomerase, type IA, central CLM_2730 IPR023406 DNA topoisomerase, type IA, active site CLM_2730 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CLM_2731 IPR003488 DNA recombination-mediator protein A CLM_2731 IPR041104 DNA processing protein A, sterile alpha motif domain CLM_2732 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2732 IPR001208 MCM domain CLM_2732 IPR004482 Mg chelatase-related protein CLM_2732 IPR025158 Mg chelatase-related protein, C-terminal domain CLM_2732 IPR000523 Magnesium chelatase ChlI domain CLM_2732 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2732 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_2732 IPR003593 AAA+ ATPase domain CLM_2733 IPR003509 Uncharacterised protein family UPF0102 CLM_2733 IPR011335 Restriction endonuclease type II-like CLM_2733 IPR011856 tRNA endonuclease-like domain superfamily CLM_2734 IPR012337 Ribonuclease H-like superfamily CLM_2734 IPR022898 Ribonuclease HII CLM_2734 IPR036397 Ribonuclease H superfamily CLM_2734 IPR001352 Ribonuclease HII/HIII CLM_2734 IPR024567 Ribonuclease HII/HIII domain CLM_2735 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2735 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CLM_2735 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily CLM_2735 IPR019991 GTP-binding protein, ribosome biogenesis CLM_2735 IPR006073 GTP binding domain CLM_2735 IPR016478 GTPase, MTG1 CLM_2736 IPR036286 LexA/Signal peptidase-like superfamily CLM_2736 IPR019758 Peptidase S26A, signal peptidase I, conserved site CLM_2736 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CLM_2736 IPR000223 Peptidase S26A, signal peptidase I CLM_2736 IPR019756 Peptidase S26A, signal peptidase I, serine active site CLM_2736 IPR019533 Peptidase S26 CLM_2737 IPR008991 Translation protein SH3-like domain superfamily CLM_2737 IPR001857 Ribosomal protein L19 CLM_2737 IPR018257 Ribosomal protein L19, conserved site CLM_2737 IPR038657 Ribosomal protein L19 superfamily CLM_2738 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_2738 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain CLM_2738 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria CLM_2738 IPR029028 Alpha/beta knot methyltransferases CLM_2738 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal CLM_2739 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2739 IPR011961 16S rRNA processing protein RimM CLM_2739 IPR027275 PRC-barrel domain CLM_2739 IPR036976 RimM, N-terminal domain superfamily CLM_2739 IPR002676 RimM, N-terminal CLM_2739 IPR011033 PRC-barrel-like superfamily CLM_2740 IPR015946 K homology domain-like, alpha/beta CLM_2740 IPR020627 Uncharacterised protein family UPF0109 CLM_2740 IPR009019 K homology domain superfamily, prokaryotic type CLM_2741 IPR000307 Ribosomal protein S16 CLM_2741 IPR020592 Ribosomal protein S16, conserved site CLM_2741 IPR023803 Ribosomal protein S16 domain superfamily CLM_2742 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily CLM_2742 IPR004780 Signal recognition particle protein CLM_2742 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2742 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CLM_2742 IPR022941 Signal recognition particle, SRP54 subunit CLM_2742 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CLM_2742 IPR004125 Signal recognition particle, SRP54 subunit, M-domain CLM_2742 IPR003593 AAA+ ATPase domain CLM_2742 IPR013822 Signal recognition particle SRP54, helical bundle CLM_2743 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2743 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CLM_2743 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2744 IPR013822 Signal recognition particle SRP54, helical bundle CLM_2744 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CLM_2744 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CLM_2744 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2744 IPR003593 AAA+ ATPase domain CLM_2744 IPR036225 SRP/SRP receptor, N-terminal CLM_2744 IPR004390 Signal-recognition particle receptor FtsY CLM_2745 IPR010935 SMCs flexible hinge CLM_2745 IPR024704 Structural maintenance of chromosomes protein CLM_2745 IPR003395 RecF/RecN/SMC, N-terminal CLM_2745 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2745 IPR036277 SMCs flexible hinge superfamily CLM_2745 IPR011890 Structural maintenance of chromosomes protein, prokaryotic CLM_2748 IPR000999 Ribonuclease III domain CLM_2748 IPR011907 Ribonuclease III CLM_2748 IPR014720 Double-stranded RNA-binding domain CLM_2748 IPR036389 Ribonuclease III, endonuclease domain superfamily CLM_2749 IPR009081 Phosphopantetheine binding ACP domain CLM_2749 IPR003231 Acyl carrier protein (ACP) CLM_2749 IPR036736 ACP-like superfamily CLM_2749 IPR006162 Phosphopantetheine attachment site CLM_2750 IPR003664 Fatty acid synthesis PlsX protein CLM_2750 IPR012281 Phospholipid biosynthesis protein, PlsX-like CLM_2751 IPR011332 Zinc-binding ribosomal protein CLM_2751 IPR002677 Ribosomal protein L32p CLM_2752 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CLM_2753 IPR023865 Aliphatic acid kinase, short-chain, conserved site CLM_2753 IPR000890 Aliphatic acid kinase, short-chain CLM_2753 IPR004372 Acetate/propionate kinase CLM_2754 IPR012147 Phosphate acetyl/butyryltransferase CLM_2754 IPR002505 Phosphate acetyl/butaryl transferase CLM_2754 IPR042112 Phosphate acetyltransferase, domain 2 CLM_2754 IPR004614 Phosphate acetyltransferase CLM_2754 IPR042113 Phosphate acetyltransferase, domain 1 CLM_2759 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta CLM_2759 IPR031002 D-proline reductase, PrdA proprotein CLM_2761 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2761 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC CLM_2761 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2761 IPR019554 Soluble ligand binding domain CLM_2761 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2761 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CLM_2761 IPR009051 Alpha-helical ferredoxin CLM_2761 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CLM_2763 IPR003660 HAMP domain CLM_2763 IPR029151 Periplasmic sensor-like domain superfamily CLM_2763 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2763 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_2763 IPR033479 Double Cache domain 1 CLM_2768 IPR002293 Amino acid/polyamine transporter I CLM_2770 IPR008794 Proline racemase family CLM_2776 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta CLM_2776 IPR031002 D-proline reductase, PrdA proprotein CLM_2778 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2778 IPR009051 Alpha-helical ferredoxin CLM_2778 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC CLM_2778 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CLM_2778 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2778 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2778 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CLM_2779 IPR031002 D-proline reductase, PrdA proprotein CLM_2779 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta CLM_2780 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CLM_2780 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CLM_2780 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2780 IPR019554 Soluble ligand binding domain CLM_2780 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC CLM_2780 IPR009051 Alpha-helical ferredoxin CLM_2780 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2780 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2787 IPR031002 D-proline reductase, PrdA proprotein CLM_2787 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta CLM_2788 IPR019554 Soluble ligand binding domain CLM_2788 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2788 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily CLM_2788 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain CLM_2788 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC CLM_2788 IPR009051 Alpha-helical ferredoxin CLM_2788 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2788 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2789 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2789 IPR003593 AAA+ ATPase domain CLM_2789 IPR009057 Homeobox-like domain superfamily CLM_2789 IPR002197 DNA binding HTH domain, Fis-type CLM_2789 IPR036291 NAD(P)-binding domain superfamily CLM_2789 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2789 IPR000014 PAS domain CLM_2789 IPR035965 PAS domain superfamily CLM_2789 IPR013767 PAS fold CLM_2789 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_2789 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2789 IPR025944 Sigma-54 interaction domain, conserved site CLM_2790 IPR008513 tRNA(Met) cytidine acetate ligase CLM_2790 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2793 IPR001980 Phosphopantetheine adenylyltransferase CLM_2793 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2793 IPR004821 Cytidyltransferase-like domain CLM_2794 IPR004398 RNA methyltransferase, RsmD CLM_2794 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2795 IPR012340 Nucleic acid-binding, OB-fold CLM_2795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2795 IPR033454 RecG, wedge domain CLM_2795 IPR011545 DEAD/DEAH box helicase domain CLM_2795 IPR001650 Helicase, C-terminal CLM_2795 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2795 IPR004609 ATP-dependent DNA helicase RecG CLM_2796 IPR036117 DhaL domain superfamily CLM_2796 IPR004007 DhaL domain CLM_2796 IPR019986 DAK2 domain-containing protein YloV CLM_2796 IPR033470 Uncharacterised protein, DhaK domain CLM_2797 IPR005531 Alkaline shock protein Asp23 CLM_2798 IPR034704 L28p-like CLM_2798 IPR026569 Ribosomal protein L28/L24 CLM_2798 IPR037147 Ribosomal protein L28/L24 superfamily CLM_2798 IPR001383 Ribosomal protein L28 CLM_2802 IPR013785 Aldolase-type TIM barrel CLM_2802 IPR026019 Ribulose-phosphate 3-epimerase CLM_2802 IPR000056 Ribulose-phosphate 3-epimerase-like CLM_2802 IPR011060 Ribulose-phosphate binding barrel CLM_2803 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2803 IPR012340 Nucleic acid-binding, OB-fold CLM_2803 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CLM_2803 IPR004881 Ribosome biogenesis GTPase RsgA CLM_2803 IPR010914 RsgA GTPase domain CLM_2803 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal CLM_2804 IPR008271 Serine/threonine-protein kinase, active site CLM_2804 IPR017441 Protein kinase, ATP binding site CLM_2804 IPR005543 PASTA domain CLM_2804 IPR011009 Protein kinase-like domain superfamily CLM_2804 IPR000719 Protein kinase domain CLM_2805 IPR001932 PPM-type phosphatase domain CLM_2805 IPR036457 PPM-type phosphatase domain superfamily CLM_2805 IPR015655 Protein phosphatase 2C family CLM_2806 IPR007197 Radical SAM CLM_2806 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr CLM_2806 IPR027492 Dual-specificity RNA methyltransferase RlmN CLM_2806 IPR040072 Methyltransferase (Class A) CLM_2806 IPR013785 Aldolase-type TIM barrel CLM_2807 IPR035926 NusB-like superfamily CLM_2807 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2807 IPR004573 rRNA small subunit methyltransferase B CLM_2807 IPR023267 RNA (C5-cytosine) methyltransferase CLM_2807 IPR006027 NusB/RsmB/TIM44 CLM_2807 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CLM_2807 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CLM_2808 IPR007395 Putative neutral zinc metallopeptidase CLM_2809 IPR005794 Methionyl-tRNA formyltransferase CLM_2809 IPR005793 Formyl transferase, C-terminal CLM_2809 IPR037022 Formyl transferase, C-terminal domain superfamily CLM_2809 IPR011034 Formyl transferase-like, C-terminal domain superfamily CLM_2809 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain CLM_2809 IPR002376 Formyl transferase, N-terminal CLM_2809 IPR036477 Formyl transferase, N-terminal domain superfamily CLM_2809 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CLM_2810 IPR036821 Peptide deformylase superfamily CLM_2810 IPR023635 Peptide deformylase CLM_2811 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain CLM_2811 IPR041236 Primosomal protein N, C-terminal domain CLM_2811 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily CLM_2811 IPR041222 Primosomal protein N', 3' DNA-binding domain CLM_2811 IPR005259 Primosomal protein N' CLM_2811 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2811 IPR001650 Helicase, C-terminal CLM_2811 IPR006935 Helicase/UvrB, N-terminal CLM_2811 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2812 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal CLM_2812 IPR003382 Flavoprotein CLM_2812 IPR036551 Flavin prenyltransferase-like CLM_2812 IPR035929 CoaB-like superfamily CLM_2812 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC CLM_2813 IPR012293 RNA polymerase subunit, RPB6/omega CLM_2813 IPR006110 RNA polymerase, subunit omega/K/RPB6 CLM_2813 IPR036161 RPB6/omega subunit-like superfamily CLM_2813 IPR003716 DNA-directed RNA polymerase, omega subunit CLM_2814 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CLM_2814 IPR008144 Guanylate kinase-like domain CLM_2814 IPR020590 Guanylate kinase, conserved site CLM_2814 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2814 IPR017665 Guanylate kinase CLM_2815 IPR007169 Extracellular matrix regulatory protein A CLM_2816 IPR013527 YicC-like, N-terminal CLM_2816 IPR013551 Domain of unknown function DUF1732 CLM_2816 IPR005229 Conserved hypothetical protein CHP00255 CLM_2817 IPR004550 L-asparaginase, type II CLM_2817 IPR036152 Asparaginase/glutaminase-like superfamily CLM_2817 IPR006034 Asparaginase/glutaminase-like CLM_2817 IPR020827 Asparaginase/glutaminase, active site 1 CLM_2817 IPR037152 L-asparaginase, N-terminal domain superfamily CLM_2817 IPR027474 L-asparaginase, N-terminal CLM_2817 IPR027473 L-asparaginase, C-terminal CLM_2817 IPR040919 Asparaginase/glutaminase, C-terminal CLM_2817 IPR027475 Asparaginase/glutaminase, active site 2 CLM_2823 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLM_2823 IPR036291 NAD(P)-binding domain superfamily CLM_2823 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CLM_2823 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal CLM_2823 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent CLM_2823 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLM_2824 IPR005225 Small GTP-binding protein domain CLM_2824 IPR003593 AAA+ ATPase domain CLM_2824 IPR006073 GTP binding domain CLM_2824 IPR031166 EngA-type guanine nucleotide-binding (G) domain CLM_2824 IPR016484 GTP-binding protein EngA CLM_2824 IPR032859 GTPase Der, C-terminal KH-domain-like CLM_2824 IPR015946 K homology domain-like, alpha/beta CLM_2824 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2826 IPR028366 Phosphate transport system protein PhoU CLM_2826 IPR038078 PhoU-like domain superfamily CLM_2826 IPR026022 PhoU domain CLM_2827 IPR005670 Phosphate transport system permease protein 1 CLM_2827 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2827 IPR015850 ABC transporter, phosphate import, PstB CLM_2827 IPR017871 ABC transporter, conserved site CLM_2827 IPR003439 ABC transporter-like CLM_2827 IPR003593 AAA+ ATPase domain CLM_2828 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_2828 IPR035906 MetI-like superfamily CLM_2828 IPR005672 Phosphate transport system permease protein PstA CLM_2829 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_2829 IPR011864 Phosphate ABC transporter, permease protein PstC CLM_2829 IPR035906 MetI-like superfamily CLM_2830 IPR024370 PBP domain CLM_2830 IPR011862 Phosphate binding protein CLM_2831 IPR003660 HAMP domain CLM_2831 IPR000700 PAS-associated, C-terminal CLM_2831 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_2831 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_2831 IPR000014 PAS domain CLM_2831 IPR005467 Histidine kinase domain CLM_2831 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_2831 IPR029151 Periplasmic sensor-like domain superfamily CLM_2831 IPR013767 PAS fold CLM_2831 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2831 IPR035965 PAS domain superfamily CLM_2831 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2832 IPR011006 CheY-like superfamily CLM_2832 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_2832 IPR016032 Signal transduction response regulator, C-terminal effector CLM_2832 IPR001789 Signal transduction response regulator, receiver domain CLM_2832 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2832 IPR039420 Transcriptional regulatory protein WalR-like CLM_2834 IPR003796 Ribonucleotide reductase regulator NrdR-like CLM_2834 IPR005144 ATP-cone domain CLM_2835 IPR014238 Sporulation protein YlmC/YmxH CLM_2835 IPR027275 PRC-barrel domain CLM_2835 IPR011033 PRC-barrel-like superfamily CLM_2836 IPR014212 RNA polymerase sigma-G type CLM_2836 IPR000943 RNA polymerase sigma-70 CLM_2836 IPR007627 RNA polymerase sigma-70 region 2 CLM_2836 IPR007624 RNA polymerase sigma-70 region 3 CLM_2836 IPR007630 RNA polymerase sigma-70 region 4 CLM_2836 IPR013325 RNA polymerase sigma factor, region 2 CLM_2836 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2836 IPR014284 RNA polymerase sigma-70 like domain CLM_2836 IPR014322 RNA polymerase sigma-B/F/G type CLM_2837 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2837 IPR007630 RNA polymerase sigma-70 region 4 CLM_2837 IPR007627 RNA polymerase sigma-70 region 2 CLM_2837 IPR014200 RNA polymerase sigma-E type CLM_2837 IPR014284 RNA polymerase sigma-70 like domain CLM_2837 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2837 IPR013325 RNA polymerase sigma factor, region 2 CLM_2837 IPR000943 RNA polymerase sigma-70 CLM_2838 IPR005081 Sigma-E processing peptidase SpoIIGA CLM_2839 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain CLM_2839 IPR008280 Tubulin/FtsZ, C-terminal CLM_2839 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily CLM_2839 IPR036525 Tubulin/FtsZ, GTPase domain superfamily CLM_2839 IPR000158 Cell division protein FtsZ CLM_2839 IPR020805 Cell division protein FtsZ, conserved site CLM_2839 IPR024757 Cell division protein FtsZ, C-terminal CLM_2839 IPR003008 Tubulin/FtsZ, GTPase domain CLM_2840 IPR003494 SHS2 domain inserted in FtsA CLM_2840 IPR020823 Cell division protein FtsA CLM_2841 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2843 IPR003593 AAA+ ATPase domain CLM_2843 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2843 IPR001482 Type II/IV secretion system protein CLM_2843 IPR006321 Pilus retraction protein PilT CLM_2844 IPR022893 Shikimate dehydrogenase family CLM_2844 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal CLM_2844 IPR011342 Shikimate dehydrogenase CLM_2844 IPR036291 NAD(P)-binding domain superfamily CLM_2844 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CLM_2845 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2845 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2845 IPR013325 RNA polymerase sigma factor, region 2 CLM_2845 IPR014284 RNA polymerase sigma-70 like domain CLM_2845 IPR014209 RNA polymerase sigma-K type CLM_2845 IPR000943 RNA polymerase sigma-70 CLM_2845 IPR007627 RNA polymerase sigma-70 region 2 CLM_2845 IPR007630 RNA polymerase sigma-70 region 4 CLM_2850 IPR011033 PRC-barrel-like superfamily CLM_2850 IPR027275 PRC-barrel domain CLM_2850 IPR019060 Domain of unknown function DUF2382 CLM_2850 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal CLM_2860 IPR001460 Penicillin-binding protein, transpeptidase CLM_2860 IPR012338 Beta-lactamase/transpeptidase-like CLM_2861 IPR026008 Uridine kinase CLM_2861 IPR006083 Phosphoribulokinase/uridine kinase CLM_2861 IPR000764 Uridine kinase-like CLM_2861 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2864 IPR003770 Endolytic murein transglycosylase CLM_2866 IPR004613 Ribonuclease J CLM_2866 IPR042173 Ribonuclease J, domain 2 CLM_2866 IPR030854 Ribonuclease J, bacteria CLM_2866 IPR041636 Ribonuclease J, C-terminal CLM_2866 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLM_2866 IPR001279 Metallo-beta-lactamase CLM_2866 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2866 IPR001587 Ribonuclease J, conserved site CLM_2867 IPR036390 Winged helix DNA-binding domain superfamily CLM_2867 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2867 IPR002481 Ferric-uptake regulator CLM_2868 IPR009711 Uncharacterised protein family UPF0473 CLM_2869 IPR012337 Ribonuclease H-like superfamily CLM_2869 IPR006641 YqgF/RNase H-like domain CLM_2869 IPR037027 YqgF/RNase H-like domain superfamily CLM_2869 IPR005227 Putative pre-16S rRNA nuclease CLM_2870 IPR009309 IreB regulatory phosphoprotein CLM_2871 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal CLM_2871 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain CLM_2871 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria CLM_2871 IPR003156 DHHA1 domain CLM_2871 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CLM_2871 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2871 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CLM_2871 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily CLM_2871 IPR002318 Alanine-tRNA ligase, class IIc CLM_2872 IPR002549 Transmembrane protein TqsA-like CLM_2874 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal CLM_2875 IPR000192 Aminotransferase class V domain CLM_2875 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2875 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_2875 IPR010240 Cysteine desulfurase IscS CLM_2875 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal CLM_2875 IPR016454 Cysteine desulfurase CLM_2875 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2875 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2876 IPR036390 Winged helix DNA-binding domain superfamily CLM_2876 IPR000944 Transcription regulator Rrf2-type CLM_2876 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2876 IPR030489 Transcription regulator Rrf2-type, conserved site CLM_2877 IPR021886 MgsA AAA+ ATPase C-terminal CLM_2877 IPR008824 RuvB-like P-loop domain CLM_2877 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2877 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CLM_2877 IPR003593 AAA+ ATPase domain CLM_2877 IPR032423 AAA C-terminal domain CLM_2878 IPR016195 Polymerase/histidinol phosphatase-like CLM_2878 IPR010140 Histidinol phosphate phosphatase, HisJ CLM_2880 IPR003797 DegV CLM_2882 IPR036291 NAD(P)-binding domain superfamily CLM_2882 IPR023401 Ornithine cyclodeaminase, N-terminal CLM_2882 IPR003462 Ornithine cyclodeaminase/mu-crystallin CLM_2883 IPR001463 Sodium:alanine symporter CLM_2884 IPR001463 Sodium:alanine symporter CLM_2887 IPR036921 PurM-like, N-terminal domain superfamily CLM_2887 IPR010918 PurM-like, C-terminal domain CLM_2887 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain CLM_2887 IPR016188 PurM-like, N-terminal domain CLM_2887 IPR036676 PurM-like, C-terminal domain superfamily CLM_2887 IPR010074 Phosphoribosylformylglycinamidine subunit PurL CLM_2889 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CLM_2889 IPR013815 ATP-grasp fold, subdomain 1 CLM_2889 IPR008279 PEP-utilising enzyme, mobile domain CLM_2889 IPR036637 Phosphohistidine domain superfamily CLM_2892 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CLM_2892 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CLM_2892 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_2892 IPR016039 Thiolase-like CLM_2894 IPR036736 ACP-like superfamily CLM_2894 IPR025110 AMP-binding enzyme, C-terminal domain CLM_2894 IPR020845 AMP-binding, conserved site CLM_2894 IPR000873 AMP-dependent synthetase/ligase CLM_2894 IPR042099 AMP-dependent synthetase-like superfamily CLM_2894 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLM_2894 IPR001242 Condensation domain CLM_2894 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLM_2894 IPR009081 Phosphopantetheine binding ACP domain CLM_2894 IPR010060 Non-ribosomal peptide synthase CLM_2894 IPR006162 Phosphopantetheine attachment site CLM_2894 IPR010071 Amino acid adenylation domain CLM_2900 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CLM_2900 IPR006130 Aspartate/ornithine carbamoyltransferase CLM_2900 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CLM_2900 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CLM_2900 IPR002292 Ornithine/putrescine carbamoyltransferase CLM_2900 IPR024904 Ornithine carbamoyltransferase CLM_2901 IPR003964 Carbamate kinase CLM_2901 IPR001048 Aspartate/glutamate/uridylate kinase CLM_2901 IPR036393 Acetylglutamate kinase-like superfamily CLM_2902 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_2902 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_2902 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2902 IPR001085 Serine hydroxymethyltransferase CLM_2902 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site CLM_2902 IPR039429 Serine hydroxymethyltransferase-like domain CLM_2903 IPR010619 Putative threonine/serine exporter CLM_2905 IPR003735 Metal-sensitive transcriptional repressor CLM_2905 IPR038390 Metal-sensitive transcriptional repressor superfamily CLM_2906 IPR023214 HAD superfamily CLM_2906 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLM_2906 IPR036412 HAD-like superfamily CLM_2909 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase CLM_2909 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2909 IPR004821 Cytidyltransferase-like domain CLM_2910 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLM_2910 IPR018177 L-lactate dehydrogenase, active site CLM_2910 IPR022383 Lactate/malate dehydrogenase, C-terminal CLM_2910 IPR011304 L-lactate dehydrogenase CLM_2910 IPR036291 NAD(P)-binding domain superfamily CLM_2910 IPR001557 L-lactate/malate dehydrogenase CLM_2910 IPR001236 Lactate/malate dehydrogenase, N-terminal CLM_2912 IPR004013 PHP domain CLM_2912 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_2912 IPR016195 Polymerase/histidinol phosphatase-like CLM_2917 IPR024405 Prophage protein BhlA/UviB CLM_2935 IPR005021 Terminase large subunit, Lambdalikevirus-type CLM_2935 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2935 IPR036390 Winged helix DNA-binding domain superfamily CLM_2966 IPR002104 Integrase, catalytic domain CLM_2966 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_2966 IPR010998 Integrase/recombinase, N-terminal CLM_2966 IPR011931 Tyrosine recombinase XerC CLM_2966 IPR004107 Integrase, SAM-like, N-terminal CLM_2966 IPR013762 Integrase-like, catalytic domain superfamily CLM_2966 IPR023009 Tyrosine recombinase XerC/XerD CLM_2967 IPR023358 Peptidase M18, domain 2 CLM_2967 IPR001948 Peptidase M18 CLM_2967 IPR022983 M18 family aminopeptidase 1, putative CLM_2968 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB CLM_2968 IPR004488 Magnesium/cobalt transport protein CorA CLM_2969 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CLM_2969 IPR002698 5-formyltetrahydrofolate cyclo-ligase CLM_2969 IPR037171 NagB/RpiA transferase-like CLM_2970 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLM_2970 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CLM_2970 IPR011104 HPr kinase/phosphorylase, C-terminal CLM_2970 IPR003755 HPr(Ser) kinase/phosphorylase CLM_2971 IPR009242 Protein of unknown function DUF896 CLM_2972 IPR015414 Transmembrane protein TMEM64 CLM_2972 IPR032816 SNARE associated Golgi protein CLM_2973 IPR015414 Transmembrane protein TMEM64 CLM_2973 IPR032816 SNARE associated Golgi protein CLM_2977 IPR001173 Glycosyltransferase 2-like CLM_2977 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2977 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase CLM_2978 IPR001307 Thiosulphate sulfurtransferase, conserved site CLM_2978 IPR001763 Rhodanese-like domain CLM_2978 IPR036873 Rhodanese-like domain superfamily CLM_2979 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase CLM_2982 IPR001279 Metallo-beta-lactamase CLM_2982 IPR008254 Flavodoxin/nitric oxide synthase CLM_2982 IPR016440 Rubredoxin-oxygen oxidoreductase CLM_2982 IPR001226 Flavodoxin, conserved site CLM_2982 IPR029039 Flavoprotein-like superfamily CLM_2982 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2984 IPR036452 Ribonucleoside hydrolase-like CLM_2984 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CLM_2985 IPR036821 Peptide deformylase superfamily CLM_2985 IPR023635 Peptide deformylase CLM_2987 IPR002699 ATPase, V1 complex, subunit D CLM_2988 IPR022879 V-type ATP synthase regulatory subunit B/beta CLM_2988 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2988 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLM_2988 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLM_2988 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLM_2989 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CLM_2989 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLM_2989 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CLM_2989 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLM_2989 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal CLM_2989 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2989 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension CLM_2989 IPR022878 V-type ATP synthase catalytic alpha chain CLM_2989 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLM_2990 IPR036906 ATPase, V1 complex, subunit F superfamily CLM_2990 IPR022944 ATPase, V1 complex, subunit F, bacterial/archaeal CLM_2990 IPR008218 ATPase, V1 complex, subunit F CLM_2992 IPR002842 V-type ATPase subunit E CLM_2993 IPR002379 V-ATPase proteolipid subunit C-like domain CLM_2993 IPR000245 V-ATPase proteolipid subunit CLM_2993 IPR035921 F/V-ATP synthase subunit C superfamily CLM_2994 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family CLM_3000 IPR023299 P-type ATPase, cytoplasmic domain N CLM_3000 IPR018303 P-type ATPase, phosphorylation site CLM_3000 IPR008250 P-type ATPase, A domain superfamily CLM_3000 IPR036412 HAD-like superfamily CLM_3000 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_3000 IPR023214 HAD superfamily CLM_3000 IPR006068 Cation-transporting P-type ATPase, C-terminal CLM_3000 IPR005782 P-type ATPase, subfamily IIA, SERCA-type CLM_3000 IPR001757 P-type ATPase CLM_3000 IPR004014 Cation-transporting P-type ATPase, N-terminal CLM_3001 IPR000644 CBS domain CLM_3001 IPR001667 DDH domain CLM_3001 IPR038763 DHH phosphoesterase superfamily CLM_3001 IPR004097 DHHA2 domain CLM_3001 IPR010766 DRTGG CLM_3001 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLM_3001 IPR038222 DHHA2 domain superfamily CLM_3003 IPR019776 Flagellar basal body rod protein, conserved site CLM_3003 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3003 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3003 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLM_3003 IPR001444 Flagellar basal body rod protein, N-terminal CLM_3003 IPR012834 Flagellar basal-body rod FlgG CLM_3004 IPR019776 Flagellar basal body rod protein, conserved site CLM_3004 IPR001444 Flagellar basal body rod protein, N-terminal CLM_3004 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3004 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3004 IPR012834 Flagellar basal-body rod FlgG CLM_3004 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLM_3007 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3007 IPR013325 RNA polymerase sigma factor, region 2 CLM_3007 IPR012845 RNA polymerase sigma factor, FliA/WhiG CLM_3007 IPR007630 RNA polymerase sigma-70 region 4 CLM_3007 IPR014284 RNA polymerase sigma-70 like domain CLM_3007 IPR000943 RNA polymerase sigma-70 CLM_3007 IPR007627 RNA polymerase sigma-70 region 2 CLM_3007 IPR007624 RNA polymerase sigma-70 region 3 CLM_3009 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3009 IPR025501 ATP binding protein MinD CLM_3009 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLM_3010 IPR003593 AAA+ ATPase domain CLM_3010 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CLM_3010 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3010 IPR020006 Flagellar biosynthesis protein FlhF CLM_3011 IPR042196 FHIPEP, domain 4 CLM_3011 IPR042194 FHIPEP, domain 1 CLM_3011 IPR025505 FHIPEP conserved site CLM_3011 IPR006301 Flagellar biosynthesis protein FlhA CLM_3011 IPR001712 Type III secretion system FHIPEP CLM_3011 IPR042193 FHIPEP, domain 3 CLM_3012 IPR006135 Type III secretion system substrate exporter CLM_3012 IPR029025 Type III secretion system substrate exporter, C-terminal CLM_3012 IPR006136 Flagellar biosynthetic protein FlhB CLM_3013 IPR006305 Flagellar biosynthesis protein FliQ CLM_3013 IPR002191 Bacterial export protein family 3 CLM_3014 IPR005837 Flagellar transport protein FliP CLM_3014 IPR005838 Type III secretion system inner membrane P protein CLM_3016 IPR005503 Flagellar basal body-associated protein FliL CLM_3017 IPR006665 OmpA-like domain CLM_3017 IPR036737 OmpA-like domain superfamily CLM_3017 IPR025713 Motility protein B, N-terminal domain CLM_3018 IPR000540 Flagellar motor protein MotA, conserved site CLM_3018 IPR002898 MotA/TolQ/ExbB proton channel CLM_3019 IPR009384 Swarming motility protein SwrD-like CLM_3020 IPR019776 Flagellar basal body rod protein, conserved site CLM_3020 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3020 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3020 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLM_3020 IPR001444 Flagellar basal body rod protein, N-terminal CLM_3020 IPR012836 Flagellar basal-body rod FlgF CLM_3022 IPR005648 Flagellar hook capping protein CLM_3025 IPR003593 AAA+ ATPase domain CLM_3025 IPR005714 ATPase, type III secretion system, FliI/YscN CLM_3025 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLM_3025 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLM_3025 IPR032463 ATPase, type III secretion system, FliI CLM_3025 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLM_3025 IPR040627 T3SS EscN ATPase, C-terminal CLM_3025 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3025 IPR022425 Flagellar export ATPase FliI, clade 2 CLM_3025 IPR000225 Armadillo CLM_3027 IPR000090 Flagellar motor switch protein FliG CLM_3027 IPR032779 Flagellar motor switch protein FliG, middle domain CLM_3027 IPR028263 Flagellar motor switch protein FliG, N-terminal domain CLM_3027 IPR023087 Flagellar motor switch protein FliG, C-terminal CLM_3027 IPR011002 Flagellar motor switch protein FliG, alpha-helical CLM_3028 IPR013556 Flagellar M-ring C-terminal CLM_3028 IPR000067 Flagellar M-ring protein FliF CLM_3028 IPR006182 Secretory protein YscJ/FliF CLM_3029 IPR001624 Flagellar hook-basal body complex protein FliE CLM_3030 IPR006299 Flagellar basal-body rod protein FlgC CLM_3030 IPR001444 Flagellar basal body rod protein, N-terminal CLM_3030 IPR019776 Flagellar basal body rod protein, conserved site CLM_3030 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3031 IPR019776 Flagellar basal body rod protein, conserved site CLM_3031 IPR001444 Flagellar basal body rod protein, N-terminal CLM_3031 IPR006300 Flagellar basal-body rod protein FlgB CLM_3032 IPR001492 Flagellin CLM_3032 IPR042187 Flagellin, C-terminal domain, subdomain 2 CLM_3032 IPR001029 Flagellin, D0/D1 domain CLM_3034 IPR009049 Argininosuccinate lyase CLM_3034 IPR008948 L-Aspartase-like CLM_3034 IPR029419 Argininosuccinate lyase, C-terminal CLM_3034 IPR022761 Fumarate lyase, N-terminal CLM_3034 IPR000362 Fumarate lyase family CLM_3034 IPR020557 Fumarate lyase, conserved site CLM_3034 IPR024083 Fumarase/histidase, N-terminal CLM_3035 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body CLM_3035 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3035 IPR023434 Argininosuccinate synthase, type 1 subfamily CLM_3035 IPR018223 Argininosuccinate synthase, conserved site CLM_3035 IPR001518 Argininosuccinate synthase CLM_3038 IPR022924 Cardiolipin synthase CLM_3038 IPR001736 Phospholipase D/Transphosphatidylase CLM_3038 IPR027379 Cardiolipin synthase N-terminal CLM_3038 IPR025202 Phospholipase D-like domain CLM_3038 IPR030874 Cardiolipin synthase, Firmicutes-type CLM_3039 IPR010343 Aromatic acid exporter family member 1 CLM_3043 IPR036291 NAD(P)-binding domain superfamily CLM_3043 IPR016040 NAD(P)-binding domain CLM_3044 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal CLM_3044 IPR013132 N-acetylneuraminic acid synthase, N-terminal CLM_3044 IPR020007 N-acetylneuraminate synthase CLM_3044 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily CLM_3044 IPR013785 Aldolase-type TIM barrel CLM_3044 IPR013974 SAF domain CLM_3045 IPR020039 Pseudaminic acid cytidylyltransferase CLM_3045 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3045 IPR003329 Acylneuraminate cytidylyltransferase CLM_3049 IPR015899 UDP-galactopyranose mutase, C-terminal CLM_3049 IPR004379 UDP-galactopyranose mutase CLM_3050 IPR003362 Bacterial sugar transferase CLM_3050 IPR017472 Undecaprenyl-phosphate galactose phosphotransferase, WbaP CLM_3050 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase CLM_3051 IPR005702 Exopolysaccharide synthesis protein CLM_3051 IPR025669 AAA domain CLM_3051 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3052 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC CLM_3052 IPR016195 Polymerase/histidinol phosphatase-like CLM_3053 IPR032807 Tyrosine kinase, G-rich domain CLM_3053 IPR003856 Polysaccharide chain length determinant N-terminal domain CLM_3054 IPR004474 Cell envelope-related transcriptional attenuator domain CLM_3054 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU CLM_3059 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3059 IPR029151 Periplasmic sensor-like domain superfamily CLM_3060 IPR042187 Flagellin, C-terminal domain, subdomain 2 CLM_3060 IPR001492 Flagellin CLM_3060 IPR001029 Flagellin, D0/D1 domain CLM_3064 IPR007235 Glycosyl transferase, family 28, C-terminal CLM_3067 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3067 IPR001173 Glycosyltransferase 2-like CLM_3079 IPR036291 NAD(P)-binding domain superfamily CLM_3079 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC CLM_3079 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase CLM_3079 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CLM_3079 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLM_3079 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CLM_3079 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CLM_3079 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CLM_3079 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CLM_3081 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like CLM_3081 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_3081 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_3081 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_3081 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3081 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE CLM_3082 IPR014985 WbqC-like protein family CLM_3084 IPR005835 Nucleotidyl transferase domain CLM_3084 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form CLM_3084 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3085 IPR005888 dTDP-glucose 4,6-dehydratase CLM_3085 IPR036291 NAD(P)-binding domain superfamily CLM_3085 IPR016040 NAD(P)-binding domain CLM_3086 IPR013132 N-acetylneuraminic acid synthase, N-terminal CLM_3086 IPR013785 Aldolase-type TIM barrel CLM_3086 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily CLM_3086 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal CLM_3086 IPR013974 SAF domain CLM_3086 IPR020030 Pseudaminic acid biosynthesis, PseI CLM_3087 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3087 IPR003329 Acylneuraminate cytidylyltransferase CLM_3089 IPR013815 ATP-grasp fold, subdomain 1 CLM_3089 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CLM_3089 IPR016185 Pre-ATP-grasp domain superfamily CLM_3089 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CLM_3089 IPR011095 D-alanine--D-alanine ligase, C-terminal CLM_3089 IPR005905 D-alanine--D-alanine ligase CLM_3089 IPR011761 ATP-grasp fold CLM_3090 IPR005886 UDP-glucose 4-epimerase CLM_3090 IPR036291 NAD(P)-binding domain superfamily CLM_3090 IPR016040 NAD(P)-binding domain CLM_3091 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) CLM_3091 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CLM_3091 IPR036291 NAD(P)-binding domain superfamily CLM_3092 IPR001173 Glycosyltransferase 2-like CLM_3092 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3092 IPR013026 Tetratricopeptide repeat-containing domain CLM_3092 IPR011990 Tetratricopeptide-like helical domain superfamily CLM_3092 IPR019734 Tetratricopeptide repeat CLM_3095 IPR001173 Glycosyltransferase 2-like CLM_3095 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3096 IPR042187 Flagellin, C-terminal domain, subdomain 2 CLM_3096 IPR001492 Flagellin CLM_3096 IPR001029 Flagellin, D0/D1 domain CLM_3097 IPR042187 Flagellin, C-terminal domain, subdomain 2 CLM_3097 IPR001492 Flagellin CLM_3097 IPR001029 Flagellin, D0/D1 domain CLM_3099 IPR040026 Flagellar hook-associated protein 2 CLM_3099 IPR003481 Flagellar hook-associated protein 2, N-terminal CLM_3099 IPR010809 Flagellar hook-associated protein 2, C-terminal CLM_3099 IPR010810 Flagellin hook, IN motif CLM_3100 IPR036584 Flagellar protein FliS superfamily CLM_3100 IPR003713 Flagellar protein FliS CLM_3103 IPR003751 Translational regulator CsrA CLM_3103 IPR036107 Carbon storage regulator superfamily CLM_3104 IPR024046 Flagellar assembly factor FliW domain superfamily CLM_3104 IPR003775 Flagellar assembly factor FliW CLM_3106 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3106 IPR019776 Flagellar basal body rod protein, conserved site CLM_3106 IPR002371 Flagellar hook-associated protein 1 CLM_3106 IPR001444 Flagellar basal body rod protein, N-terminal CLM_3109 IPR012826 Flagellar motor switch FliN CLM_3109 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb CLM_3109 IPR001543 Surface presentation of antigen (SpoA) CLM_3109 IPR036429 SpoA-like superfamily CLM_3109 IPR028976 CheC-like superfamily CLM_3109 IPR007597 CheC-like protein CLM_3110 IPR036429 SpoA-like superfamily CLM_3110 IPR001543 Surface presentation of antigen (SpoA) CLM_3110 IPR001689 Flagellar motor switch protein FliM CLM_3110 IPR028976 CheC-like superfamily CLM_3111 IPR036061 CheW-like domain superfamily CLM_3111 IPR002545 CheW-like domain CLM_3111 IPR039315 Chemotaxis protein CheW CLM_3112 IPR001789 Signal transduction response regulator, receiver domain CLM_3112 IPR011006 CheY-like superfamily CLM_3113 IPR007597 CheC-like protein CLM_3113 IPR028976 CheC-like superfamily CLM_3114 IPR004105 Histidine kinase CheA-like, homodimeric domain CLM_3114 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3114 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3114 IPR035891 CheY-binding domain of CheA CLM_3114 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding CLM_3114 IPR036641 HPT domain superfamily CLM_3114 IPR036061 CheW-like domain superfamily CLM_3114 IPR002545 CheW-like domain CLM_3114 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily CLM_3114 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily CLM_3114 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain CLM_3114 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_3114 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_3114 IPR005467 Histidine kinase domain CLM_3115 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CLM_3115 IPR000780 MCP methyltransferase, CheR-type CLM_3115 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CLM_3115 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3116 IPR035909 Methylesterase CheB, C-terminal CLM_3116 IPR001789 Signal transduction response regulator, receiver domain CLM_3116 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase CLM_3116 IPR011006 CheY-like superfamily CLM_3116 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type CLM_3117 IPR038592 CheD-like superfamily CLM_3117 IPR011324 Cytotoxic necrotizing factor-like, catalytic CLM_3117 IPR005659 Chemoreceptor glutamine deamidase CheD CLM_3118 IPR039315 Chemotaxis protein CheW CLM_3118 IPR002545 CheW-like domain CLM_3118 IPR036061 CheW-like domain superfamily CLM_3120 IPR003352 Phosphotransferase system, EIIC CLM_3120 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_3120 IPR011055 Duplicated hybrid motif CLM_3120 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_3120 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_3120 IPR036878 Glucose permease domain IIB CLM_3120 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_3120 IPR011299 PTS system glucose-specific IIBC component CLM_3121 IPR011608 PRD domain CLM_3121 IPR036634 PRD domain superfamily CLM_3121 IPR001550 Transcription antiterminator, conserved site CLM_3121 IPR036650 CAT RNA-binding domain superfamily CLM_3121 IPR004341 CAT RNA-binding domain CLM_3122 IPR005785 Branched-chain amino acid aminotransferase I CLM_3122 IPR036038 Aminotransferase-like, PLP-dependent enzymes CLM_3122 IPR018300 Aminotransferase, class IV, conserved site CLM_3122 IPR001544 Aminotransferase class IV CLM_3126 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CLM_3126 IPR029061 Thiamin diphosphate-binding fold CLM_3126 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain CLM_3126 IPR011895 Pyruvate-flavodoxin oxidoreductase CLM_3126 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal CLM_3126 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain CLM_3126 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLM_3126 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CLM_3126 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain CLM_3126 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3126 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3127 IPR004276 Glycosyltransferase family 28, N-terminal domain CLM_3127 IPR007235 Glycosyl transferase, family 28, C-terminal CLM_3127 IPR006009 N-acetylglucosaminyltransferase, MurG CLM_3129 IPR003660 HAMP domain CLM_3129 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3129 IPR041328 ResE, histidine kinase sensor domain CLM_3129 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_3129 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3129 IPR005467 Histidine kinase domain CLM_3129 IPR000014 PAS domain CLM_3129 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_3129 IPR013767 PAS fold CLM_3129 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_3129 IPR035965 PAS domain superfamily CLM_3130 IPR003156 DHHA1 domain CLM_3130 IPR038763 DHH phosphoesterase superfamily CLM_3130 IPR001667 DDH domain CLM_3130 IPR041122 RecJ, OB domain CLM_3130 IPR004610 Bacterial RecJ exonuclease CLM_3130 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal CLM_3132 IPR023555 Thiol-disulphide oxidoreductase ResA CLM_3132 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLM_3132 IPR036249 Thioredoxin-like superfamily CLM_3132 IPR013766 Thioredoxin domain CLM_3136 IPR006699 Glycerol uptake operon antiterminator CLM_3136 IPR035928 GlpP-like superfamily CLM_3137 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_3137 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CLM_3137 IPR005743 DNA gyrase, subunit A CLM_3137 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLM_3137 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CLM_3137 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CLM_3137 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CLM_3138 IPR006171 TOPRIM domain CLM_3138 IPR002288 DNA gyrase B subunit, C-terminal CLM_3138 IPR011557 DNA gyrase, subunit B CLM_3138 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3138 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3138 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3138 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3138 IPR001241 DNA topoisomerase, type IIA CLM_3138 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLM_3138 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CLM_3138 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CLM_3138 IPR018522 DNA topoisomerase, type IIA, conserved site CLM_3138 IPR034160 DNA gyrase subunit B, TOPRIM domain CLM_3140 IPR006153 Cation/H+ exchanger CLM_3140 IPR004771 K+/H+ exchanger CLM_3140 IPR038770 Sodium/solute symporter superfamily CLM_3143 IPR005084 Carbohydrate binding module family 6 CLM_3143 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_3143 IPR018208 Glycoside hydrolase family 11, active site 1 CLM_3143 IPR008979 Galactose-binding-like domain superfamily CLM_3143 IPR013319 Glycoside hydrolase family 11/12 CLM_3143 IPR033119 Glycoside hydrolase family 11, active site 2 CLM_3143 IPR001137 Glycoside hydrolase family 11 CLM_3143 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_3143 IPR002509 NodB homology domain CLM_3143 IPR033123 Glycosyl hydrolases family 11 (GH11) domain CLM_3145 IPR005886 UDP-glucose 4-epimerase CLM_3145 IPR016040 NAD(P)-binding domain CLM_3145 IPR036291 NAD(P)-binding domain superfamily CLM_3146 IPR010087 Flavodoxin, short chain CLM_3146 IPR008254 Flavodoxin/nitric oxide synthase CLM_3146 IPR001226 Flavodoxin, conserved site CLM_3146 IPR029039 Flavoprotein-like superfamily CLM_3148 IPR009057 Homeobox-like domain superfamily CLM_3148 IPR018062 HTH domain AraC-type, conserved site CLM_3148 IPR018060 DNA binding HTH domain, AraC-type CLM_3149 IPR003507 Peptidase family S66 CLM_3149 IPR040449 LD-carboxypeptidase, N-terminal CLM_3149 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CLM_3149 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLM_3149 IPR040921 LD-carboxypeptidase, C-terminal CLM_3149 IPR029062 Class I glutamine amidotransferase-like CLM_3150 IPR005999 Glycerol kinase CLM_3150 IPR000577 Carbohydrate kinase, FGGY CLM_3150 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLM_3150 IPR018483 Carbohydrate kinase, FGGY, conserved site CLM_3150 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLM_3151 IPR022357 Major intrinsic protein, conserved site CLM_3151 IPR000425 Major intrinsic protein CLM_3151 IPR023271 Aquaporin-like CLM_3155 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3155 IPR003439 ABC transporter-like CLM_3155 IPR003593 AAA+ ATPase domain CLM_3156 IPR036390 Winged helix DNA-binding domain superfamily CLM_3156 IPR000524 Transcription regulator HTH, GntR CLM_3156 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3157 IPR006976 VanZ-like CLM_3158 IPR011254 Prismane-like superfamily CLM_3158 IPR010048 Hydroxylamine reductase CLM_3158 IPR016100 Prismane, alpha-bundle CLM_3158 IPR016099 Prismane-like, alpha/beta-sandwich CLM_3158 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase CLM_3160 IPR000787 Peptidase M29 CLM_3160 IPR035097 Peptidase M29, N-terminal CLM_3162 IPR004761 Spore germination GerAB CLM_3163 IPR004995 Bacillus/Clostridium Ger spore germination protein CLM_3165 IPR002509 NodB homology domain CLM_3165 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_3165 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA CLM_3166 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_3166 IPR011545 DEAD/DEAH box helicase domain CLM_3166 IPR030880 DEAD-box ATP-dependent RNA helicase CshA CLM_3166 IPR001650 Helicase, C-terminal CLM_3166 IPR014014 RNA helicase, DEAD-box type, Q motif CLM_3166 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_3166 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3169 IPR033463 Single cache domain 3 CLM_3169 IPR029151 Periplasmic sensor-like domain superfamily CLM_3169 IPR004090 Chemotaxis methyl-accepting receptor CLM_3169 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3169 IPR003660 HAMP domain CLM_3173 IPR012338 Beta-lactamase/transpeptidase-like CLM_3173 IPR015868 Glutaminase CLM_3174 IPR010611 3D domain CLM_3174 IPR036908 RlpA-like domain superfamily CLM_3174 IPR036779 LysM domain superfamily CLM_3174 IPR018392 LysM domain CLM_3175 IPR029151 Periplasmic sensor-like domain superfamily CLM_3175 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3175 IPR003660 HAMP domain CLM_3175 IPR033479 Double Cache domain 1 CLM_3177 IPR012348 Ribonucleotide reductase-like CLM_3177 IPR033909 Ribonucleotide reductase small subunit CLM_3177 IPR030475 Ribonucleotide reductase small subunit, acitve site CLM_3177 IPR000358 Ribonucleotide reductase small subunit family CLM_3177 IPR009078 Ferritin-like superfamily CLM_3178 IPR005144 ATP-cone domain CLM_3178 IPR013346 Ribonucleotide reductase, class I , alpha subunit CLM_3178 IPR000788 Ribonucleotide reductase large subunit, C-terminal CLM_3178 IPR013509 Ribonucleotide reductase large subunit, N-terminal CLM_3178 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal CLM_3178 IPR039718 Ribonucleoside-diphosphate reductase large subunit CLM_3181 IPR001126 UmuC domain CLM_3181 IPR024728 DNA polymerase type-Y, HhH motif CLM_3181 IPR022880 DNA polymerase IV CLM_3181 IPR017961 DNA polymerase, Y-family, little finger domain CLM_3181 IPR036775 DNA polymerase, Y-family, little finger domain superfamily CLM_3182 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3182 IPR013785 Aldolase-type TIM barrel CLM_3182 IPR005720 Dihydroorotate dehydrogenase domain CLM_3182 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3183 IPR028261 Dihydroprymidine dehydrogenase domain II CLM_3183 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3183 IPR023753 FAD/NAD(P)-binding domain CLM_3183 IPR009051 Alpha-helical ferredoxin CLM_3184 IPR029057 Phosphoribosyltransferase-like CLM_3184 IPR023050 Bifunctional protein PyrR CLM_3184 IPR000836 Phosphoribosyltransferase domain CLM_3187 IPR003439 ABC transporter-like CLM_3187 IPR017871 ABC transporter, conserved site CLM_3187 IPR041102 UvrA, interaction domain CLM_3187 IPR041552 UvrA DNA-binding domain CLM_3187 IPR004602 UvrABC system subunit A CLM_3187 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3189 IPR004175 RNA 2',3'-cyclic phosphodiesterase CLM_3189 IPR009097 Cyclic phosphodiesterase CLM_3191 IPR004090 Chemotaxis methyl-accepting receptor CLM_3191 IPR003660 HAMP domain CLM_3191 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_3191 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3193 IPR023214 HAD superfamily CLM_3193 IPR006357 HAD-superfamily hydrolase, subfamily IIA CLM_3193 IPR000086 NUDIX hydrolase domain CLM_3193 IPR020084 NUDIX hydrolase, conserved site CLM_3193 IPR015797 NUDIX hydrolase-like domain superfamily CLM_3193 IPR020476 NUDIX hydrolase CLM_3193 IPR036412 HAD-like superfamily CLM_3194 IPR036390 Winged helix DNA-binding domain superfamily CLM_3194 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3194 IPR002481 Ferric-uptake regulator CLM_3196 IPR036573 Carbohydrate-binding module superfamily 5/12 CLM_3196 IPR013783 Immunoglobulin-like fold CLM_3196 IPR017853 Glycoside hydrolase superfamily CLM_3196 IPR001579 Glycoside hydrolase, chitinase active site CLM_3196 IPR003610 Carbohydrate-binding module family 5/12 CLM_3196 IPR036116 Fibronectin type III superfamily CLM_3196 IPR003961 Fibronectin type III CLM_3196 IPR011583 Chitinase II CLM_3196 IPR029070 Chitinase insertion domain superfamily CLM_3196 IPR001223 Glycoside hydrolase family 18, catalytic domain CLM_3197 IPR037171 NagB/RpiA transferase-like CLM_3197 IPR018321 Glucosamine-6-phosphate isomerase, conserved site CLM_3197 IPR004547 Glucosamine-6-phosphate isomerase CLM_3197 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase CLM_3198 IPR032466 Metal-dependent hydrolase CLM_3198 IPR003764 N-acetylglucosamine-6-phosphate deacetylase CLM_3198 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_3198 IPR006680 Amidohydrolase-related CLM_3200 IPR036650 CAT RNA-binding domain superfamily CLM_3200 IPR001550 Transcription antiterminator, conserved site CLM_3200 IPR036634 PRD domain superfamily CLM_3200 IPR011608 PRD domain CLM_3200 IPR004341 CAT RNA-binding domain CLM_3201 IPR011055 Duplicated hybrid motif CLM_3201 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLM_3202 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component CLM_3202 IPR001996 Phosphotransferase system, IIB component, type 1 CLM_3202 IPR013013 Phosphotransferase system, EIIC component, type 1 CLM_3202 IPR003352 Phosphotransferase system, EIIC CLM_3202 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLM_3202 IPR036878 Glucose permease domain IIB CLM_3203 IPR002528 Multi antimicrobial extrusion protein CLM_3204 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CLM_3204 IPR000825 SUF system FeS cluster assembly, SufBD CLM_3204 IPR010231 SUF system FeS cluster assembly, SufB CLM_3205 IPR017871 ABC transporter, conserved site CLM_3205 IPR003593 AAA+ ATPase domain CLM_3205 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA CLM_3205 IPR003439 ABC transporter-like CLM_3205 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3205 IPR008995 Molybdate/tungstate binding, C-terminal CLM_3205 IPR013611 Transport-associated OB, type 2 CLM_3207 IPR002481 Ferric-uptake regulator CLM_3207 IPR036390 Winged helix DNA-binding domain superfamily CLM_3207 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3208 IPR002528 Multi antimicrobial extrusion protein CLM_3209 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin CLM_3209 IPR029039 Flavoprotein-like superfamily CLM_3209 IPR008254 Flavodoxin/nitric oxide synthase CLM_3209 IPR001279 Metallo-beta-lactamase CLM_3209 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3209 IPR024934 Rubredoxin-like domain CLM_3209 IPR024935 Rubredoxin domain CLM_3210 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLM_3210 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLM_3210 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLM_3210 IPR006089 Acyl-CoA dehydrogenase, conserved site CLM_3210 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLM_3210 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLM_3210 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLM_3211 IPR038965 Transposase InsF-like CLM_3211 IPR036397 Ribonuclease H superfamily CLM_3211 IPR012337 Ribonuclease H-like superfamily CLM_3211 IPR001584 Integrase, catalytic core CLM_3215 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit CLM_3216 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component CLM_3218 IPR037171 NagB/RpiA transferase-like CLM_3218 IPR004163 Coenzyme A transferase binding site CLM_3218 IPR012792 3-oxoacid CoA-transferase, subunit A CLM_3218 IPR004165 Coenzyme A transferase family I CLM_3219 IPR012791 3-oxoacid CoA-transferase, subunit B CLM_3219 IPR004165 Coenzyme A transferase family I CLM_3219 IPR037171 NagB/RpiA transferase-like CLM_3219 IPR004164 Coenzyme A transferase active site CLM_3220 IPR017696 Molybdenum cofactor cytidylyltransferase CLM_3220 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3220 IPR025877 MobA-like NTP transferase CLM_3221 IPR002888 [2Fe-2S]-binding CLM_3221 IPR036884 [2Fe-2S]-binding domain superfamily CLM_3221 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CLM_3221 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CLM_3221 IPR036010 2Fe-2S ferredoxin-like superfamily CLM_3221 IPR012675 Beta-grasp domain superfamily CLM_3223 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CLM_3223 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CLM_3223 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_3223 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLM_3227 IPR038770 Sodium/solute symporter superfamily CLM_3227 IPR004771 K+/H+ exchanger CLM_3227 IPR006153 Cation/H+ exchanger CLM_3236 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr CLM_3236 IPR007197 Radical SAM CLM_3236 IPR013785 Aldolase-type TIM barrel CLM_3236 IPR022881 Ribosomal RNA large subunit methyltransferase, Cfr CLM_3236 IPR040072 Methyltransferase (Class A) CLM_3237 IPR003439 ABC transporter-like CLM_3237 IPR017871 ABC transporter, conserved site CLM_3237 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3237 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLM_3237 IPR003593 AAA+ ATPase domain CLM_3237 IPR032781 ABC-transporter extension domain CLM_3239 IPR023645 D-aminopeptidase CLM_3239 IPR012856 D-aminopeptidase, domain B CLM_3239 IPR012338 Beta-lactamase/transpeptidase-like CLM_3239 IPR001466 Beta-lactamase-related CLM_3239 IPR027279 D-aminopeptidase/lipoprotein domain superfamily CLM_3240 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_3240 IPR009057 Homeobox-like domain superfamily CLM_3240 IPR001647 DNA-binding HTH domain, TetR-type CLM_3247 IPR000182 GNAT domain CLM_3247 IPR016181 Acyl-CoA N-acyltransferase CLM_3254 IPR017871 ABC transporter, conserved site CLM_3254 IPR003439 ABC transporter-like CLM_3254 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_3254 IPR003593 AAA+ ATPase domain CLM_3254 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3254 IPR011527 ABC transporter type 1, transmembrane domain CLM_3254 IPR039421 Type I protein exporter CLM_3254 IPR011917 ABC transporter, lipid A export, MsbA CLM_3255 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3255 IPR012340 Nucleic acid-binding, OB-fold CLM_3255 IPR010280 (Uracil-5)-methyltransferase family CLM_3255 IPR002792 TRAM domain CLM_3255 IPR030390 RNA methyltransferase TrmA, active site CLM_3257 IPR000917 Sulfatase, N-terminal CLM_3257 IPR012160 Lipoteichoic acid synthase-like CLM_3257 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLM_3258 IPR002781 Transmembrane protein TauE-like CLM_3259 IPR002180 Lumazine/riboflavin synthase CLM_3259 IPR034964 Lumazine synthase CLM_3259 IPR036467 Lumazine/riboflavin synthase superfamily CLM_3260 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CLM_3260 IPR016299 Riboflavin biosynthesis protein RibBA CLM_3260 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLM_3260 IPR032677 GTP cyclohydrolase II CLM_3260 IPR000926 GTP cyclohydrolase II, RibA CLM_3260 IPR036144 RibA-like superfamily CLM_3261 IPR026017 Lumazine-binding domain CLM_3261 IPR017938 Riboflavin synthase-like beta-barrel CLM_3261 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CLM_3261 IPR001783 Lumazine-binding protein CLM_3262 IPR011549 Riboflavin-specific deaminase, C-terminal CLM_3262 IPR004794 Riboflavin biosynthesis protein RibD CLM_3262 IPR016193 Cytidine deaminase-like CLM_3262 IPR016192 APOBEC/CMP deaminase, zinc-binding CLM_3262 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_3262 IPR024072 Dihydrofolate reductase-like domain superfamily CLM_3262 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CLM_3264 IPR002933 Peptidase M20 CLM_3264 IPR011650 Peptidase M20, dimerisation domain CLM_3264 IPR001160 Peptidase M20C, Xaa-His dipeptidase CLM_3265 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3265 IPR017782 Hydroxyacylglutathione hydrolase CLM_3265 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain CLM_3265 IPR001279 Metallo-beta-lactamase CLM_3265 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain CLM_3266 IPR006068 Cation-transporting P-type ATPase, C-terminal CLM_3266 IPR004014 Cation-transporting P-type ATPase, N-terminal CLM_3266 IPR023299 P-type ATPase, cytoplasmic domain N CLM_3266 IPR008250 P-type ATPase, A domain superfamily CLM_3266 IPR036412 HAD-like superfamily CLM_3266 IPR018303 P-type ATPase, phosphorylation site CLM_3266 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_3266 IPR023214 HAD superfamily CLM_3266 IPR006415 P-type ATPase, subfamily IIIB CLM_3266 IPR001757 P-type ATPase CLM_3269 IPR016185 Pre-ATP-grasp domain superfamily CLM_3269 IPR020559 Phosphoribosylglycinamide synthetase, conserved site CLM_3269 IPR000115 Phosphoribosylglycinamide synthetase CLM_3269 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLM_3269 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal CLM_3269 IPR011054 Rudiment single hybrid motif CLM_3269 IPR013815 ATP-grasp fold, subdomain 1 CLM_3269 IPR020560 Phosphoribosylglycinamide synthetase, C-domain CLM_3269 IPR011761 ATP-grasp fold CLM_3269 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily CLM_3270 IPR016193 Cytidine deaminase-like CLM_3270 IPR024051 AICAR transformylase, duplicated domain superfamily CLM_3270 IPR002695 Bifunctional purine biosynthesis protein PurH-like CLM_3270 IPR011607 Methylglyoxal synthase-like domain CLM_3270 IPR036914 Methylglyoxal synthase-like domain superfamily CLM_3271 IPR036477 Formyl transferase, N-terminal domain superfamily CLM_3271 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CLM_3271 IPR002376 Formyl transferase, N-terminal CLM_3271 IPR004607 Phosphoribosylglycinamide formyltransferase CLM_3272 IPR036676 PurM-like, C-terminal domain superfamily CLM_3272 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase CLM_3272 IPR010918 PurM-like, C-terminal domain CLM_3272 IPR036921 PurM-like, N-terminal domain superfamily CLM_3272 IPR016188 PurM-like, N-terminal domain CLM_3273 IPR005854 Amidophosphoribosyltransferase CLM_3273 IPR000836 Phosphoribosyltransferase domain CLM_3273 IPR035584 Amidophosphoribosyltransferase, N-terminal CLM_3273 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3273 IPR029057 Phosphoribosyltransferase-like CLM_3273 IPR017932 Glutamine amidotransferase type 2 domain CLM_3274 IPR018236 SAICAR synthetase, conserved site CLM_3274 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase CLM_3274 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase CLM_3274 IPR028923 SAICAR synthetase/ADE2, N-terminal CLM_3275 IPR024694 PurE, prokaryotic type CLM_3275 IPR000031 PurE domain CLM_3275 IPR033747 Class I PurE CLM_3275 IPR035893 PurE domain superfamily CLM_3277 IPR002888 [2Fe-2S]-binding CLM_3277 IPR036884 [2Fe-2S]-binding domain superfamily CLM_3277 IPR036010 2Fe-2S ferredoxin-like superfamily CLM_3277 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CLM_3277 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CLM_3277 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_3277 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLM_3277 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CLM_3277 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CLM_3277 IPR012675 Beta-grasp domain superfamily CLM_3278 IPR002933 Peptidase M20 CLM_3278 IPR017706 Peptidase M20/DapE, YgeY CLM_3278 IPR036264 Bacterial exopeptidase dimerisation domain CLM_3278 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CLM_3278 IPR011650 Peptidase M20, dimerisation domain CLM_3279 IPR006680 Amidohydrolase-related CLM_3279 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_3279 IPR017700 Putative aminohydrolase SsnA CLM_3279 IPR032466 Metal-dependent hydrolase CLM_3280 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3280 IPR017701 Putative selenate reductase YgfK CLM_3280 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3280 IPR009051 Alpha-helical ferredoxin CLM_3280 IPR023753 FAD/NAD(P)-binding domain CLM_3280 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3280 IPR028261 Dihydroprymidine dehydrogenase domain II CLM_3281 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CLM_3281 IPR017702 Putative carbamoyltransferase YgeW CLM_3281 IPR006130 Aspartate/ornithine carbamoyltransferase CLM_3281 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CLM_3281 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CLM_3282 IPR006680 Amidohydrolase-related CLM_3282 IPR023766 D-phenylhydantoinase CLM_3282 IPR011778 Hydantoinase/dihydropyrimidinase CLM_3282 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_3282 IPR032466 Metal-dependent hydrolase CLM_3283 IPR006042 Xanthine/uracil permease CLM_3283 IPR006043 Xanthine/uracil/vitamin C permease CLM_3283 IPR017588 Uric acid permease UacT-like CLM_3284 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_3284 IPR019871 Diaminopropionate ammonia-lyase, subgroup CLM_3284 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_3284 IPR010081 Diaminopropionate ammonia-lyase CLM_3286 IPR036565 Mur-like, catalytic domain superfamily CLM_3286 IPR017587 Putative selenium-dependent hydroxylase accessory protein YqeC CLM_3287 IPR025877 MobA-like NTP transferase CLM_3287 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3287 IPR001451 Hexapeptide repeat CLM_3287 IPR011004 Trimeric LpxA-like superfamily CLM_3287 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CLM_3287 IPR038009 GlmU, C-terminal LbH domain CLM_3288 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family CLM_3288 IPR003777 XdhC- CoxI CLM_3288 IPR027051 XdhC Rossmann domain CLM_3292 IPR003439 ABC transporter-like CLM_3292 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3292 IPR003593 AAA+ ATPase domain CLM_3292 IPR017871 ABC transporter, conserved site CLM_3297 IPR006043 Xanthine/uracil/vitamin C permease CLM_3297 IPR026033 Azaguanine-like transporters CLM_3299 IPR001463 Sodium:alanine symporter CLM_3300 IPR000212 DNA helicase, UvrD/REP type CLM_3300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3300 IPR014016 UvrD-like helicase, ATP-binding domain CLM_3300 IPR027785 UvrD-like helicase C-terminal domain CLM_3301 IPR004506 tRNA-specific 2-thiouridylase CLM_3301 IPR023382 Adenine nucleotide alpha hydrolase-like domains CLM_3301 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3303 IPR012166 Uncharacterised protein family RocB CLM_3303 IPR002933 Peptidase M20 CLM_3304 IPR029016 GAF-like domain superfamily CLM_3304 IPR003018 GAF domain CLM_3304 IPR000614 Free Met sulfoxide reductase conserved site CLM_3305 IPR000644 CBS domain CLM_3305 IPR002550 CNNM, transmembrane domain CLM_3305 IPR036318 FAD-binding, type PCMH-like superfamily CLM_3305 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3305 IPR005170 Transporter-associated domain CLM_3306 IPR002767 Thiamine-binding protein CLM_3306 IPR029756 MTH1187/YkoF-like CLM_3307 IPR037509 Phosphomethylpyrimidine synthase CLM_3307 IPR038521 ThiC/Bza superfamily CLM_3307 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B CLM_3308 IPR029057 Phosphoribosyltransferase-like CLM_3308 IPR005854 Amidophosphoribosyltransferase CLM_3308 IPR035584 Amidophosphoribosyltransferase, N-terminal CLM_3308 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3308 IPR017932 Glutamine amidotransferase type 2 domain CLM_3308 IPR000836 Phosphoribosyltransferase domain CLM_3314 IPR003593 AAA+ ATPase domain CLM_3314 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3314 IPR017871 ABC transporter, conserved site CLM_3314 IPR003439 ABC transporter-like CLM_3315 IPR000524 Transcription regulator HTH, GntR CLM_3315 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3315 IPR036390 Winged helix DNA-binding domain superfamily CLM_3316 IPR031360 Tryptophan transporter TrpP CLM_3318 IPR000595 Cyclic nucleotide-binding domain CLM_3318 IPR018490 Cyclic nucleotide-binding-like CLM_3318 IPR036390 Winged helix DNA-binding domain superfamily CLM_3318 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3318 IPR018335 Transcription regulator HTH, Crp-type, conserved site CLM_3318 IPR014710 RmlC-like jelly roll fold CLM_3318 IPR012318 Crp-type HTH domain CLM_3319 IPR042047 Cell wall hydrolase SleB, domain 1 CLM_3319 IPR011105 Cell wall hydrolase, SleB CLM_3322 IPR013525 ABC-2 type transporter CLM_3322 IPR017500 Phage infection protein, YhgE, N-terminal CLM_3322 IPR017501 Phage infection protein, YhgE, C-terminal CLM_3323 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CLM_3323 IPR030395 Glycerophosphodiester phosphodiesterase domain CLM_3325 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_3325 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3325 IPR002129 Pyridoxal phosphate-dependent decarboxylase CLM_3325 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_3326 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3326 IPR005170 Transporter-associated domain CLM_3326 IPR000644 CBS domain CLM_3326 IPR002550 CNNM, transmembrane domain CLM_3326 IPR036318 FAD-binding, type PCMH-like superfamily CLM_3329 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CLM_3329 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CLM_3332 IPR007627 RNA polymerase sigma-70 region 2 CLM_3332 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3332 IPR028630 RNA polymerase sigma factor RpoD CLM_3332 IPR009042 RNA polymerase sigma-70 region 1.2 CLM_3332 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3332 IPR014284 RNA polymerase sigma-70 like domain CLM_3332 IPR000943 RNA polymerase sigma-70 CLM_3332 IPR012760 RNA polymerase sigma factor RpoD, C-terminal CLM_3332 IPR013325 RNA polymerase sigma factor, region 2 CLM_3332 IPR042189 Sigma-70 factor, region 1.1 superfamily CLM_3332 IPR007127 RNA polymerase sigma factor 70, region 1.1 CLM_3332 IPR007630 RNA polymerase sigma-70 region 4 CLM_3332 IPR007624 RNA polymerase sigma-70 region 3 CLM_3333 IPR030846 DNA primase DnaG, bacteria CLM_3333 IPR036977 DNA Primase, CHC2-type zinc finger CLM_3333 IPR034151 Bacterial DnaG primase, TOPRIM domain CLM_3333 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CLM_3333 IPR013264 DNA primase, catalytic core, N-terminal CLM_3333 IPR006295 DNA primase, DnaG CLM_3333 IPR002694 Zinc finger, CHC2-type CLM_3333 IPR006171 TOPRIM domain CLM_3333 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CLM_3333 IPR019475 DNA primase, DnaB-helicase binding domain CLM_3334 IPR006261 dNTP triphosphohydrolase CLM_3334 IPR023023 dNTP triphosphohydrolase, type 2 CLM_3334 IPR003607 HD/PDEase domain CLM_3334 IPR006674 HD domain CLM_3334 IPR026875 Phosphohydrolase-associated domain CLM_3336 IPR036637 Phosphohistidine domain superfamily CLM_3336 IPR040442 Pyruvate kinase-like domain superfamily CLM_3336 IPR013815 ATP-grasp fold, subdomain 1 CLM_3336 IPR008279 PEP-utilising enzyme, mobile domain CLM_3336 IPR018274 PEP-utilising enzyme, active site CLM_3336 IPR000121 PEP-utilising enzyme, C-terminal CLM_3336 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLM_3336 IPR023151 PEP-utilising enzyme, conserved site CLM_3336 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CLM_3336 IPR010121 Pyruvate, phosphate dikinase CLM_3337 IPR000644 CBS domain CLM_3337 IPR036390 Winged helix DNA-binding domain superfamily CLM_3337 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3337 IPR016842 Protein of unknown function UCP026546, HtH-CBS CLM_3337 IPR013196 Helix-turn-helix, type 11 CLM_3338 IPR018101 Translation elongation factor Ts, conserved site CLM_3338 IPR009060 UBA-like superfamily CLM_3338 IPR036402 Elongation factor Ts, dimerisation domain superfamily CLM_3338 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CLM_3338 IPR001816 Translation elongation factor EFTs/EF1B CLM_3340 IPR030388 Era-type guanine nucleotide-binding (G) domain CLM_3340 IPR015946 K homology domain-like, alpha/beta CLM_3340 IPR005662 GTP-binding protein Era CLM_3340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3340 IPR004044 K Homology domain, type 2 CLM_3340 IPR009019 K homology domain superfamily, prokaryotic type CLM_3340 IPR005225 Small GTP-binding protein domain CLM_3340 IPR006073 GTP binding domain CLM_3341 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_3341 IPR016193 Cytidine deaminase-like CLM_3341 IPR006262 Cytidine deaminase, homotetrameric CLM_3343 IPR023091 Metalloprotease catalytic domain superfamily, predicted CLM_3343 IPR020549 Endoribonuclease YbeY, conserved site CLM_3343 IPR002036 Endoribonuclease YbeY CLM_3344 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain CLM_3344 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain CLM_3344 IPR006675 HDIG domain CLM_3344 IPR006674 HD domain CLM_3344 IPR003607 HD/PDEase domain CLM_3347 IPR042184 YqeY/Aim41, N-terminal domain CLM_3347 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CLM_3347 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CLM_3347 IPR019004 Uncharacterised protein YqeY/Aim41 CLM_3348 IPR018278 Ribosomal protein S21, conserved site CLM_3348 IPR001911 Ribosomal protein S21 CLM_3348 IPR038380 Ribosomal protein S21 superfamily CLM_3349 IPR019808 Histidine triad, conserved site CLM_3349 IPR001310 Histidine triad (HIT) protein CLM_3349 IPR011146 HIT-like domain CLM_3349 IPR036265 HIT-like superfamily CLM_3350 IPR006467 MiaB-like tRNA modifying enzyme CLM_3350 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLM_3350 IPR006638 Elp3/MiaB/NifB CLM_3350 IPR013848 Methylthiotransferase, N-terminal CLM_3350 IPR002792 TRAM domain CLM_3350 IPR034557 Threonylcarbamoyladenosine tRNA methylthiotransferase CLM_3350 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3350 IPR007197 Radical SAM CLM_3350 IPR020612 Methylthiotransferase, conserved site CLM_3350 IPR005839 Methylthiotransferase CLM_3351 IPR029028 Alpha/beta knot methyltransferases CLM_3351 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_3351 IPR006700 Ribosomal RNA small subunit methyltransferase E CLM_3351 IPR015947 PUA-like superfamily CLM_3352 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3352 IPR004498 Ribosomal protein L11 methyltransferase CLM_3353 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CLM_3353 IPR012724 Chaperone DnaJ CLM_3353 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CLM_3353 IPR002939 Chaperone DnaJ, C-terminal CLM_3353 IPR036869 Chaperone J-domain superfamily CLM_3353 IPR018253 DnaJ domain, conserved site CLM_3353 IPR008971 HSP40/DnaJ peptide-binding CLM_3353 IPR001623 DnaJ domain CLM_3354 IPR018181 Heat shock protein 70, conserved site CLM_3354 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily CLM_3354 IPR013126 Heat shock protein 70 family CLM_3354 IPR012725 Chaperone DnaK CLM_3354 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily CLM_3355 IPR009012 GrpE nucleotide exchange factor, head CLM_3355 IPR013805 GrpE nucleotide exchange factor, coiled-coil CLM_3355 IPR000740 GrpE nucleotide exchange factor CLM_3356 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily CLM_3356 IPR036390 Winged helix DNA-binding domain superfamily CLM_3356 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3356 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal CLM_3356 IPR029016 GAF-like domain superfamily CLM_3356 IPR002571 Heat-inducible transcription repressor HrcA CLM_3357 IPR006638 Elp3/MiaB/NifB CLM_3357 IPR034505 Anaerobic coproporphyrinogen-III oxidase CLM_3357 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3357 IPR004559 Heme chaperone HemW-like CLM_3357 IPR010723 HemN, C-terminal CLM_3357 IPR007197 Radical SAM CLM_3358 IPR035647 EF-G domain III/V-like CLM_3358 IPR035654 Elongation factor 4, domain IV CLM_3358 IPR006297 Elongation factor 4 CLM_3358 IPR031157 Tr-type G domain, conserved site CLM_3358 IPR038363 LepA, C-terminal domain superfamily CLM_3358 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3358 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3358 IPR000640 Elongation factor EFG, domain V-like CLM_3358 IPR000795 Transcription factor, GTP-binding domain CLM_3358 IPR005225 Small GTP-binding protein domain CLM_3358 IPR013842 GTP-binding protein LepA, C-terminal CLM_3361 IPR023430 Peptidase HybD-like domain superfamily CLM_3361 IPR005080 Peptidase A25, germination protease CLM_3362 IPR002583 Ribosomal protein S20 CLM_3362 IPR036510 Ribosomal protein S20 superfamily CLM_3366 IPR008250 P-type ATPase, A domain superfamily CLM_3366 IPR036412 HAD-like superfamily CLM_3366 IPR006068 Cation-transporting P-type ATPase, C-terminal CLM_3366 IPR023298 P-type ATPase, transmembrane domain superfamily CLM_3366 IPR018303 P-type ATPase, phosphorylation site CLM_3366 IPR023299 P-type ATPase, cytoplasmic domain N CLM_3366 IPR004014 Cation-transporting P-type ATPase, N-terminal CLM_3366 IPR023214 HAD superfamily CLM_3366 IPR001757 P-type ATPase CLM_3367 IPR011435 Na(+), Li(+), K(+)/H(+) antiporter subunit A/B CLM_3370 IPR015190 Translation elongation factor SelB, winged helix, type 2 CLM_3370 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3370 IPR015189 Translation elongation factor SelB, winged helix, type 1 CLM_3370 IPR036390 Winged helix DNA-binding domain superfamily CLM_3370 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3370 IPR000795 Transcription factor, GTP-binding domain CLM_3370 IPR004535 Translation elongation factor, selenocysteine-specific CLM_3370 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLM_3370 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3370 IPR015191 Translation elongation factor SelB, winged helix, type 3 CLM_3370 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3370 IPR005225 Small GTP-binding protein domain CLM_3371 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_3371 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain CLM_3371 IPR018319 L-seryl-tRNA selenium transferase-like CLM_3371 IPR004534 L-seryl-tRNA(Sec) selenium transferase CLM_3371 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3372 IPR023061 Selenophosphate synthetase, class I CLM_3372 IPR036921 PurM-like, N-terminal domain superfamily CLM_3372 IPR016188 PurM-like, N-terminal domain CLM_3372 IPR036676 PurM-like, C-terminal domain superfamily CLM_3372 IPR010918 PurM-like, C-terminal domain CLM_3372 IPR004536 Selenophosphate synthetase CLM_3374 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLM_3374 IPR012338 Beta-lactamase/transpeptidase-like CLM_3374 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLM_3374 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLM_3375 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_3375 IPR006225 Pseudouridine synthase, RluC/RluD CLM_3375 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CLM_3375 IPR006145 Pseudouridine synthase, RsuA/RluA CLM_3375 IPR002942 RNA-binding S4 domain CLM_3375 IPR036986 RNA-binding S4 domain superfamily CLM_3376 IPR006175 YjgF/YER057c/UK114 family CLM_3376 IPR006056 RidA family CLM_3376 IPR019897 RidA, conserved site CLM_3376 IPR035959 RutC-like superfamily CLM_3377 IPR004474 Cell envelope-related transcriptional attenuator domain CLM_3378 IPR006674 HD domain CLM_3378 IPR003607 HD/PDEase domain CLM_3378 IPR005249 Conserved hypothetical protein CHP00488 CLM_3379 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3379 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase CLM_3379 IPR004821 Cytidyltransferase-like domain CLM_3380 IPR035920 YhbY-like superfamily CLM_3380 IPR017924 RNA-binding protein YhbY CLM_3380 IPR001890 RNA-binding, CRM domain CLM_3381 IPR006074 GTP1/OBG, conserved site CLM_3381 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3381 IPR031167 OBG-type guanine nucleotide-binding (G) domain CLM_3381 IPR015349 GTP-binding protein OBG, C-terminal CLM_3381 IPR035101 GTP-binding protein, Obg-type CLM_3381 IPR014100 GTP-binding protein Obg/CgtA CLM_3381 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily CLM_3381 IPR006169 GTP1/OBG domain CLM_3381 IPR005225 Small GTP-binding protein domain CLM_3381 IPR036726 GTP1/OBG domain superfamily CLM_3381 IPR006073 GTP binding domain CLM_3382 IPR018261 Ribosomal protein L27, conserved site CLM_3382 IPR001684 Ribosomal protein L27 CLM_3384 IPR036164 L21-like superfamily CLM_3384 IPR028909 Ribosomal protein L21-like CLM_3384 IPR001787 Ribosomal protein L21 CLM_3384 IPR018258 Ribosomal protein L21, conserved site CLM_3386 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G CLM_3386 IPR003029 S1 domain CLM_3386 IPR012340 Nucleic acid-binding, OB-fold CLM_3386 IPR022967 RNA-binding domain, S1 CLM_3386 IPR004659 Ribonuclease E/G CLM_3389 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS CLM_3389 IPR008915 Peptidase M50 CLM_3389 IPR000644 CBS domain CLM_3390 IPR011055 Duplicated hybrid motif CLM_3390 IPR016047 Peptidase M23 CLM_3390 IPR007340 Opacity-associated protein A CLM_3391 IPR013437 Probable peptidoglycan glycosyltransferase FtsW CLM_3391 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLM_3391 IPR013438 Sporulation stage V, protein E CLM_3391 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLM_3392 IPR005527 Cell division topological specificity factor MinE CLM_3392 IPR036707 Cell division topological specificity factor MinE superfamily CLM_3393 IPR025501 ATP binding protein MinD CLM_3393 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_3393 IPR010223 ATP binding protein MinD, bacterial-type CLM_3393 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3394 IPR013033 Septum formation inhibitor MinC CLM_3394 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal CLM_3394 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily CLM_3394 IPR005526 Septum formation inhibitor MinC, C-terminal CLM_3398 IPR004753 Cell shape determining protein MreB CLM_3399 IPR001405 Uncharacterised protein family UPF0758 CLM_3399 IPR025657 RadC-like JAB domain CLM_3399 IPR010994 RuvA domain 2-like CLM_3399 IPR037518 MPN domain CLM_3399 IPR020891 Uncharacterised protein family UPF0758, conserved site CLM_3400 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein CLM_3400 IPR029001 Inosine triphosphate pyrophosphatase-like CLM_3405 IPR008310 UPF0735 ACT domain-containing protein CLM_3405 IPR002912 ACT domain CLM_3410 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3410 IPR001977 Dephospho-CoA kinase CLM_3411 IPR020045 DNA polymerase I-like, H3TH domain CLM_3411 IPR018320 DNA polymerase 1 CLM_3411 IPR002298 DNA polymerase A CLM_3411 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CLM_3411 IPR008918 Helix-hairpin-helix motif, class 2 CLM_3411 IPR019760 DNA-directed DNA polymerase, family A, conserved site CLM_3411 IPR029060 PIN-like domain superfamily CLM_3411 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CLM_3411 IPR002421 5'-3' exonuclease, N-terminal CLM_3411 IPR001098 DNA-directed DNA polymerase, family A, palm domain CLM_3411 IPR002562 3'-5' exonuclease domain CLM_3411 IPR012337 Ribonuclease H-like superfamily CLM_3411 IPR036397 Ribonuclease H superfamily CLM_3412 IPR000453 Chorismate synthase CLM_3412 IPR035904 Chorismate synthase AroC superfamily CLM_3412 IPR020541 Chorismate synthase, conserved site CLM_3444 IPR002611 IstB-like ATP-binding protein CLM_3444 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3444 IPR003593 AAA+ ATPase domain CLM_3451 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CLM_3451 IPR028362 Alginate O-acetyltransferase AlgI CLM_3451 IPR004299 Membrane bound O-acyl transferase, MBOAT CLM_3453 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLM_3453 IPR038300 SASP, alpha/beta-type superfamily CLM_3453 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLM_3459 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_3459 IPR012340 Nucleic acid-binding, OB-fold CLM_3459 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_3459 IPR029351 GAD domain CLM_3459 IPR004115 GAD-like domain superfamily CLM_3459 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CLM_3459 IPR004524 Aspartate-tRNA ligase, type 1 CLM_3459 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLM_3460 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CLM_3460 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_3460 IPR015807 Histidine-tRNA ligase CLM_3460 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CLM_3460 IPR004154 Anticodon-binding CLM_3460 IPR036621 Anticodon-binding domain superfamily CLM_3460 IPR033656 Histidyl-anticodon-binding CLM_3461 IPR006638 Elp3/MiaB/NifB CLM_3461 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3461 IPR007197 Radical SAM CLM_3461 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ CLM_3461 IPR034505 Anaerobic coproporphyrinogen-III oxidase CLM_3462 IPR001279 Metallo-beta-lactamase CLM_3462 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3463 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CLM_3463 IPR003732 D-aminoacyl-tRNA deacylase DTD CLM_3464 IPR002912 ACT domain CLM_3464 IPR033655 RelA, TGS domain CLM_3464 IPR012676 TGS-like CLM_3464 IPR007685 RelA/SpoT CLM_3464 IPR004811 RelA/SpoT family CLM_3464 IPR012675 Beta-grasp domain superfamily CLM_3464 IPR003607 HD/PDEase domain CLM_3464 IPR004095 TGS CLM_3465 IPR000836 Phosphoribosyltransferase domain CLM_3465 IPR005764 Adenine phosphoribosyl transferase CLM_3465 IPR029057 Phosphoribosyltransferase-like CLM_3467 IPR005665 Protein-export membrane protein SecF, bacterial CLM_3467 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CLM_3467 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3467 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CLM_3468 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CLM_3468 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3468 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CLM_3468 IPR005791 Protein translocase subunit SecD CLM_3472 IPR003849 Preprotein translocase YajC CLM_3473 IPR002616 tRNA-guanine(15) transglycosylase-like CLM_3473 IPR036511 Queuine tRNA-ribosyltransferase-like CLM_3473 IPR004803 tRNA-guanine transglycosylase CLM_3474 IPR042119 QueA, domain 2 CLM_3474 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily CLM_3474 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA CLM_3474 IPR042118 QueA, domain 1 CLM_3475 IPR008824 RuvB-like P-loop domain CLM_3475 IPR008823 RuvB C-terminal winged helix domain CLM_3475 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3475 IPR036390 Winged helix DNA-binding domain superfamily CLM_3475 IPR004605 DNA helicase, Holliday junction RuvB-type CLM_3475 IPR041445 RuvB, AAA lid domain CLM_3475 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3475 IPR003593 AAA+ ATPase domain CLM_3476 IPR010994 RuvA domain 2-like CLM_3476 IPR036267 RuvA, C-terminal domain superfamily CLM_3476 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial CLM_3476 IPR012340 Nucleic acid-binding, OB-fold CLM_3476 IPR011114 Holliday junction DNA helicase RuvA, C-terminal CLM_3476 IPR000085 Bacterial DNA recombination protein RuvA CLM_3478 IPR002876 Transcriptional regulator TACO1-like CLM_3478 IPR026564 Transcriptional regulator TACO1-like, domain 3 CLM_3478 IPR029072 YebC-like CLM_3478 IPR017856 Integrase-like, N-terminal CLM_3479 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3479 IPR015796 Impact family, bacterial/archaeal CLM_3479 IPR001498 Impact, N-terminal CLM_3479 IPR036956 Impact, N-terminal domain superfamily CLM_3479 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CLM_3479 IPR023582 Impact family CLM_3479 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CLM_3479 IPR035647 EF-G domain III/V-like CLM_3481 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3481 IPR000524 Transcription regulator HTH, GntR CLM_3481 IPR004839 Aminotransferase, class I/classII CLM_3481 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3481 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_3481 IPR036390 Winged helix DNA-binding domain superfamily CLM_3484 IPR024922 Rubredoxin CLM_3484 IPR024934 Rubredoxin-like domain CLM_3484 IPR024935 Rubredoxin domain CLM_3484 IPR018527 Rubredoxin, iron-binding site CLM_3485 IPR030394 HflX-type guanine nucleotide-binding (G) domain CLM_3485 IPR006073 GTP binding domain CLM_3485 IPR032305 GTP-binding protein, middle domain CLM_3485 IPR042108 GTPase HflX, N-terminal domain superfamily CLM_3485 IPR025121 GTPase HflX, N-terminal CLM_3485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3485 IPR016496 GTPase HflX CLM_3488 IPR001460 Penicillin-binding protein, transpeptidase CLM_3488 IPR036950 Penicillin binding protein transglycosylase domain CLM_3488 IPR023346 Lysozyme-like domain superfamily CLM_3488 IPR001264 Glycosyl transferase, family 51 CLM_3488 IPR012338 Beta-lactamase/transpeptidase-like CLM_3489 IPR014204 Sporulation stage V, protein AE CLM_3489 IPR005562 SpoVA CLM_3490 IPR010894 Stage V sporulation AD CLM_3490 IPR038369 Stage V sporulation AD superfamily CLM_3490 IPR016039 Thiolase-like CLM_3491 IPR014203 Sporulation stage V, protein AC CLM_3491 IPR005562 SpoVA CLM_3492 IPR014236 RNA polymerase sigma-F type CLM_3492 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3492 IPR000943 RNA polymerase sigma-70 CLM_3492 IPR014284 RNA polymerase sigma-70 like domain CLM_3492 IPR014322 RNA polymerase sigma-B/F/G type CLM_3492 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3492 IPR013325 RNA polymerase sigma factor, region 2 CLM_3492 IPR007630 RNA polymerase sigma-70 region 4 CLM_3492 IPR007627 RNA polymerase sigma-70 region 2 CLM_3492 IPR007624 RNA polymerase sigma-70 region 3 CLM_3493 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3493 IPR010194 Anti-sigma F factor CLM_3493 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3494 IPR002645 STAS domain CLM_3494 IPR014237 Anti-sigma F factor antagonist CLM_3494 IPR036513 STAS domain superfamily CLM_3494 IPR003658 Anti-sigma factor antagonist CLM_3495 IPR001045 Spermidine/spermine synthases CLM_3495 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3495 IPR037163 Spermidine synthase, tetramerisation domain superfamily CLM_3495 IPR030373 Polyamine biosynthesis domain, conserved site CLM_3495 IPR030374 Polyamine biosynthesis domain CLM_3495 IPR035246 Spermidine synthase, tetramerisation domain CLM_3496 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3496 IPR003356 DNA methylase, adenine-specific CLM_3496 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLM_3497 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_3497 IPR002509 NodB homology domain CLM_3497 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA CLM_3498 IPR004629 Glycosyl transferase WecB/TagA/CpsF CLM_3498 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase CLM_3499 IPR003362 Bacterial sugar transferase CLM_3499 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase CLM_3499 IPR017472 Undecaprenyl-phosphate galactose phosphotransferase, WbaP CLM_3501 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3503 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLM_3503 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA CLM_3503 IPR001296 Glycosyl transferase, family 1 CLM_3505 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLM_3506 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like CLM_3506 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain CLM_3507 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLM_3507 IPR017814 Mycothiol biosynthesis protein, MshA CLM_3507 IPR001296 Glycosyl transferase, family 1 CLM_3513 IPR004104 Oxidoreductase, C-terminal CLM_3513 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase CLM_3513 IPR000683 Oxidoreductase, N-terminal CLM_3513 IPR036291 NAD(P)-binding domain superfamily CLM_3514 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CLM_3514 IPR036291 NAD(P)-binding domain superfamily CLM_3514 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase CLM_3514 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CLM_3514 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CLM_3514 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLM_3514 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CLM_3514 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CLM_3515 IPR036291 NAD(P)-binding domain superfamily CLM_3515 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3515 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CLM_3516 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CLM_3517 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_3517 IPR001119 S-layer homology domain CLM_3518 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CLM_3518 IPR003646 SH3-like domain, bacterial-type CLM_3518 IPR007730 Sporulation-like domain CLM_3519 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3519 IPR005835 Nucleotidyl transferase domain CLM_3519 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CLM_3521 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CLM_3521 IPR005843 Alpha-D-phosphohexomutase, C-terminal CLM_3521 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CLM_3521 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CLM_3521 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CLM_3521 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CLM_3521 IPR016066 Alpha-D-phosphohexomutase, conserved site CLM_3521 IPR005841 Alpha-D-phosphohexomutase superfamily CLM_3522 IPR001021 Ribosomal protein L25, long-form CLM_3522 IPR037121 Ribosomal protein L25, C-terminal CLM_3522 IPR029751 Ribosomal protein L25 CLM_3522 IPR020057 Ribosomal protein L25, beta domain CLM_3522 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CLM_3522 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CLM_3523 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CLM_3523 IPR000310 Orn/Lys/Arg decarboxylase, major domain CLM_3523 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3523 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily CLM_3523 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_3523 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_3525 IPR012147 Phosphate acetyl/butyryltransferase CLM_3525 IPR014079 Phosphate butyryltransferase CLM_3525 IPR002505 Phosphate acetyl/butaryl transferase CLM_3526 IPR013785 Aldolase-type TIM barrel CLM_3526 IPR037396 FMN hydroxy acid dehydrogenase domain CLM_3526 IPR000262 FMN-dependent dehydrogenase CLM_3526 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site CLM_3526 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent CLM_3527 IPR007553 Domain of unknown function DUF523 CLM_3528 IPR005747 Endonuclease MutS2 CLM_3528 IPR002625 Smr domain CLM_3528 IPR000432 DNA mismatch repair protein MutS, C-terminal CLM_3528 IPR007696 DNA mismatch repair protein MutS, core CLM_3528 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3528 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_3528 IPR036063 Smr domain superfamily CLM_3529 IPR020988 Peptidase U32, collagenase CLM_3529 IPR001539 Peptidase U32 CLM_3535 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3535 IPR013026 Tetratricopeptide repeat-containing domain CLM_3535 IPR011990 Tetratricopeptide-like helical domain superfamily CLM_3535 IPR019734 Tetratricopeptide repeat CLM_3535 IPR001173 Glycosyltransferase 2-like CLM_3537 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CLM_3537 IPR005146 B3/B4 tRNA-binding domain CLM_3537 IPR009061 Putative DNA-binding domain superfamily CLM_3537 IPR005121 Ferrodoxin-fold anticodon-binding domain CLM_3537 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CLM_3537 IPR005147 tRNA synthetase, B5-domain CLM_3537 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CLM_3537 IPR012340 Nucleic acid-binding, OB-fold CLM_3537 IPR002547 tRNA-binding domain CLM_3537 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CLM_3537 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CLM_3538 IPR002319 Phenylalanyl-tRNA synthetase CLM_3538 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLM_3538 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CLM_3538 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_3538 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CLM_3538 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CLM_3539 IPR029064 50S ribosomal protein L30e-like CLM_3539 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_3539 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CLM_3539 IPR029028 Alpha/beta knot methyltransferases CLM_3539 IPR001537 tRNA/rRNA methyltransferase, SpoU type CLM_3540 IPR003148 Regulator of K+ conductance, N-terminal CLM_3540 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLM_3540 IPR006037 Regulator of K+ conductance, C-terminal CLM_3540 IPR036291 NAD(P)-binding domain superfamily CLM_3541 IPR004772 TrkH potassium transport family CLM_3541 IPR003445 Cation transporter CLM_3542 IPR035566 Ribosomal protein L20, C-terminal CLM_3542 IPR005813 Ribosomal protein L20 CLM_3543 IPR001706 Ribosomal protein L35, non-mitochondrial CLM_3543 IPR021137 Ribosomal protein L35 CLM_3543 IPR037229 Ribosomal protein L35 superfamily CLM_3543 IPR018265 Ribosomal protein L35, conserved site CLM_3544 IPR019813 Translation initiation factor 3, conserved site CLM_3544 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily CLM_3544 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily CLM_3544 IPR019815 Translation initiation factor 3, C-terminal CLM_3544 IPR001288 Translation initiation factor 3 CLM_3544 IPR019814 Translation initiation factor 3, N-terminal CLM_3546 IPR012676 TGS-like CLM_3546 IPR004095 TGS CLM_3546 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CLM_3546 IPR033728 Threonine-tRNA ligase catalytic core domain CLM_3546 IPR036621 Anticodon-binding domain superfamily CLM_3546 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CLM_3546 IPR004154 Anticodon-binding CLM_3546 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_3546 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_3546 IPR002320 Threonine-tRNA ligase, class IIa CLM_3546 IPR012675 Beta-grasp domain superfamily CLM_3550 IPR003593 AAA+ ATPase domain CLM_3550 IPR025302 Domain of unknown function DUF4162 CLM_3550 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3550 IPR017871 ABC transporter, conserved site CLM_3550 IPR003439 ABC transporter-like CLM_3556 IPR000397 Heat shock protein Hsp33 CLM_3556 IPR016154 Heat shock protein Hsp33, C-terminal CLM_3556 IPR016153 Heat shock protein Hsp33, N-terminal CLM_3557 IPR041698 Methyltransferase domain 25 CLM_3557 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3559 IPR017871 ABC transporter, conserved site CLM_3559 IPR003593 AAA+ ATPase domain CLM_3559 IPR003439 ABC transporter-like CLM_3559 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLM_3559 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3560 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3560 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLM_3560 IPR017871 ABC transporter, conserved site CLM_3560 IPR003439 ABC transporter-like CLM_3560 IPR003593 AAA+ ATPase domain CLM_3561 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLM_3561 IPR035906 MetI-like superfamily CLM_3561 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_3562 IPR035906 MetI-like superfamily CLM_3562 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_3563 IPR000914 Solute-binding protein family 5 domain CLM_3563 IPR023765 Solute-binding protein family 5, conserved site CLM_3563 IPR030678 Peptide/nickel binding protein, MppA-type CLM_3563 IPR039424 Solute-binding protein family 5 CLM_3564 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CLM_3564 IPR000534 Semialdehyde dehydrogenase, NAD-binding CLM_3564 IPR036291 NAD(P)-binding domain superfamily CLM_3564 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type CLM_3564 IPR012080 Aspartate-semialdehyde dehydrogenase CLM_3564 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site CLM_3565 IPR013785 Aldolase-type TIM barrel CLM_3565 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CLM_3565 IPR020625 Schiff base-forming aldolase, active site CLM_3565 IPR020624 Schiff base-forming aldolase, conserved site CLM_3565 IPR002220 DapA-like CLM_3566 IPR023940 Dihydrodipicolinate reductase CLM_3566 IPR036291 NAD(P)-binding domain superfamily CLM_3566 IPR022664 Dihydrodipicolinate reductase, conserved site CLM_3566 IPR000846 Dihydrodipicolinate reductase, N-terminal CLM_3566 IPR022663 Dihydrodipicolinate reductase, C-terminal CLM_3567 IPR004839 Aminotransferase, class I/classII CLM_3567 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLM_3567 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3567 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_3567 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_3568 IPR001451 Hexapeptide repeat CLM_3568 IPR011004 Trimeric LpxA-like superfamily CLM_3568 IPR018357 Hexapeptide transferase, conserved site CLM_3568 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal CLM_3568 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH CLM_3571 IPR002509 NodB homology domain CLM_3571 IPR010916 TonB box, conserved site CLM_3571 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLM_3571 IPR014228 Sporulation protein, polysaccharide deacetylase, YlxY CLM_3575 IPR036615 Mur ligase, C-terminal domain superfamily CLM_3575 IPR004101 Mur ligase, C-terminal CLM_3575 IPR001645 Folylpolyglutamate synthetase CLM_3575 IPR018109 Folylpolyglutamate synthetase, conserved site CLM_3575 IPR013221 Mur ligase, central CLM_3575 IPR036565 Mur-like, catalytic domain superfamily CLM_3576 IPR002300 Aminoacyl-tRNA synthetase, class Ia CLM_3576 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm CLM_3576 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLM_3576 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLM_3576 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CLM_3576 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLM_3576 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3576 IPR002303 Valine-tRNA ligase CLM_3576 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_3576 IPR033705 Valyl tRNA synthetase, anticodon-binding domain CLM_3576 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLM_3577 IPR006464 N-acetyltransferase RimI/Ard1 CLM_3577 IPR016181 Acyl-CoA N-acyltransferase CLM_3577 IPR000182 GNAT domain CLM_3578 IPR003439 ABC transporter-like CLM_3578 IPR003593 AAA+ ATPase domain CLM_3578 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3582 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3582 IPR017871 ABC transporter, conserved site CLM_3582 IPR003439 ABC transporter-like CLM_3582 IPR003593 AAA+ ATPase domain CLM_3583 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_3583 IPR035906 MetI-like superfamily CLM_3586 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3586 IPR003783 Regulatory protein RecX CLM_3587 IPR007863 Peptidase M16, C-terminal CLM_3587 IPR001431 Peptidase M16, zinc-binding site CLM_3587 IPR011765 Peptidase M16, N-terminal CLM_3587 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLM_3593 IPR009664 Pyrimidine/purine nucleoside phosphorylase CLM_3593 IPR014710 RmlC-like jelly roll fold CLM_3593 IPR011051 RmlC-like cupin domain superfamily CLM_3594 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLM_3594 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CLM_3594 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CLM_3594 IPR036291 NAD(P)-binding domain superfamily CLM_3594 IPR000304 Pyrroline-5-carboxylate reductase CLM_3595 IPR001150 Glycine radical domain CLM_3595 IPR004184 Pyruvate formate lyase domain CLM_3596 IPR001989 Radical-activating enzyme, conserved site CLM_3596 IPR007197 Radical SAM CLM_3596 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3596 IPR012839 Organic radical enzyme activase CLM_3596 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3596 IPR013785 Aldolase-type TIM barrel CLM_3596 IPR040074 BssD/PflA/YjjW CLM_3596 IPR034457 Organic radical-activating enzymes CLM_3597 IPR001387 Cro/C1-type helix-turn-helix domain CLM_3597 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLM_3598 IPR036420 BRCT domain superfamily CLM_3598 IPR001357 BRCT domain CLM_3598 IPR012340 Nucleic acid-binding, OB-fold CLM_3598 IPR013839 NAD-dependent DNA ligase, adenylation CLM_3598 IPR041663 DisA/LigA, helix-hairpin-helix motif CLM_3598 IPR013840 NAD-dependent DNA ligase, N-terminal CLM_3598 IPR001679 NAD-dependent DNA ligase CLM_3598 IPR010994 RuvA domain 2-like CLM_3598 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type CLM_3598 IPR004150 NAD-dependent DNA ligase, OB-fold CLM_3598 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CLM_3601 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3601 IPR022547 ATPase, RavA, C-terminal CLM_3601 IPR003593 AAA+ ATPase domain CLM_3601 IPR041538 ATPase RavA-like, AAA lid domain CLM_3601 IPR023671 ATPase RavA CLM_3601 IPR011704 ATPase, dynein-related, AAA domain CLM_3604 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3604 IPR001080 3Fe-4S ferredoxin CLM_3607 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_3607 IPR008275 CoA enzyme activase CLM_3608 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_3608 IPR035965 PAS domain superfamily CLM_3608 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3608 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3608 IPR029016 GAF-like domain superfamily CLM_3608 IPR009057 Homeobox-like domain superfamily CLM_3608 IPR000014 PAS domain CLM_3608 IPR002197 DNA binding HTH domain, Fis-type CLM_3608 IPR025944 Sigma-54 interaction domain, conserved site CLM_3608 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_3608 IPR003593 AAA+ ATPase domain CLM_3609 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_3609 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_3609 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3609 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal CLM_3609 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal CLM_3609 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site CLM_3609 IPR001308 Electron transfer flavoprotein alpha subunit/FixB CLM_3610 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site CLM_3610 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_3610 IPR012255 Electron transfer flavoprotein, beta subunit CLM_3610 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal CLM_3610 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3611 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLM_3611 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLM_3611 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLM_3611 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLM_3611 IPR006089 Acyl-CoA dehydrogenase, conserved site CLM_3611 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLM_3611 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLM_3612 IPR020610 Thiolase, active site CLM_3612 IPR020617 Thiolase, C-terminal CLM_3612 IPR020615 Thiolase, acyl-enzyme intermediate active site CLM_3612 IPR016039 Thiolase-like CLM_3612 IPR020613 Thiolase, conserved site CLM_3612 IPR020616 Thiolase, N-terminal CLM_3612 IPR002155 Thiolase CLM_3613 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CLM_3613 IPR022694 3-hydroxyacyl-CoA dehydrogenase CLM_3613 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CLM_3613 IPR036291 NAD(P)-binding domain superfamily CLM_3613 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLM_3613 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLM_3613 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CLM_3614 IPR001753 Enoyl-CoA hydratase/isomerase CLM_3614 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CLM_3614 IPR029045 ClpP/crotonase-like domain superfamily CLM_3614 IPR014748 Enoyl-CoA hydratase, C-terminal CLM_3616 IPR035901 GIY-YIG endonuclease superfamily CLM_3616 IPR038476 UvrC homology region 2 superfamily CLM_3616 IPR001162 UvrC family homology region CLM_3616 IPR036876 UVR domain superfamily CLM_3616 IPR000305 GIY-YIG endonuclease CLM_3616 IPR004791 UvrABC system, subunit C CLM_3616 IPR010994 RuvA domain 2-like CLM_3616 IPR041663 DisA/LigA, helix-hairpin-helix motif CLM_3616 IPR001943 UVR domain CLM_3617 IPR026033 Azaguanine-like transporters CLM_3617 IPR006043 Xanthine/uracil/vitamin C permease CLM_3618 IPR020873 3'-5' exoribonuclease YhaM CLM_3618 IPR003607 HD/PDEase domain CLM_3618 IPR006674 HD domain CLM_3620 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt CLM_3623 IPR030395 Glycerophosphodiester phosphodiesterase domain CLM_3623 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CLM_3624 IPR029151 Periplasmic sensor-like domain superfamily CLM_3624 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_3624 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3624 IPR003660 HAMP domain CLM_3624 IPR033479 Double Cache domain 1 CLM_3625 IPR003251 Rubrerythrin CLM_3625 IPR012347 Ferritin-like CLM_3625 IPR009040 Ferritin-like diiron domain CLM_3625 IPR024934 Rubredoxin-like domain CLM_3625 IPR009078 Ferritin-like superfamily CLM_3626 IPR012838 Pyruvate formate-lyase 1 activating enzyme CLM_3626 IPR001989 Radical-activating enzyme, conserved site CLM_3626 IPR034465 Pyruvate formate-lyase activase CLM_3626 IPR007197 Radical SAM CLM_3626 IPR013785 Aldolase-type TIM barrel CLM_3626 IPR034457 Organic radical-activating enzymes CLM_3627 IPR001150 Glycine radical domain CLM_3627 IPR005949 Formate acetyltransferase CLM_3627 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CLM_3627 IPR004184 Pyruvate formate lyase domain CLM_3629 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CLM_3629 IPR020057 Ribosomal protein L25, beta domain CLM_3629 IPR001021 Ribosomal protein L25, long-form CLM_3629 IPR037121 Ribosomal protein L25, C-terminal CLM_3629 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CLM_3629 IPR029751 Ribosomal protein L25 CLM_3631 IPR002481 Ferric-uptake regulator CLM_3631 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3631 IPR036390 Winged helix DNA-binding domain superfamily CLM_3634 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3634 IPR026881 WYL domain CLM_3634 IPR036390 Winged helix DNA-binding domain superfamily CLM_3634 IPR028349 Protein PafC CLM_3634 IPR001034 DeoR-type HTH domain CLM_3634 IPR013196 Helix-turn-helix, type 11 CLM_3639 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3639 IPR006073 GTP binding domain CLM_3639 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC CLM_3639 IPR030393 EngB-type guanine nucleotide-binding (G) domain CLM_3640 IPR015947 PUA-like superfamily CLM_3640 IPR008268 Peptidase S16, active site CLM_3640 IPR027543 Lon protease, bacterial CLM_3640 IPR003111 Lon, substrate-binding domain CLM_3640 IPR003593 AAA+ ATPase domain CLM_3640 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3640 IPR003959 ATPase, AAA-type, core CLM_3640 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3640 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3640 IPR027065 Lon protease CLM_3640 IPR008269 Peptidase S16, Lon proteolytic domain CLM_3640 IPR004815 Lon protease, bacterial/eukaryotic-type CLM_3641 IPR008268 Peptidase S16, active site CLM_3641 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3641 IPR027065 Lon protease CLM_3641 IPR008269 Peptidase S16, Lon proteolytic domain CLM_3641 IPR003959 ATPase, AAA-type, core CLM_3641 IPR003593 AAA+ ATPase domain CLM_3641 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3641 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3641 IPR014251 Sporulation protease LonB CLM_3642 IPR019489 Clp ATPase, C-terminal CLM_3642 IPR004487 Clp protease, ATP-binding subunit ClpX CLM_3642 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3642 IPR010603 Zinc finger, ClpX C4-type CLM_3642 IPR038366 Zinc finger, ClpX C4-type superfamily CLM_3642 IPR003593 AAA+ ATPase domain CLM_3642 IPR003959 ATPase, AAA-type, core CLM_3643 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_3643 IPR029045 ClpP/crotonase-like domain superfamily CLM_3643 IPR001907 ATP-dependent Clp protease proteolytic subunit CLM_3643 IPR018215 ClpP, Ser active site CLM_3643 IPR033135 ClpP, histidine active site CLM_3644 IPR008880 Trigger factor, C-terminal CLM_3644 IPR037041 Trigger factor, C-terminal domain superfamily CLM_3644 IPR036611 Trigger factor ribosome-binding domain superfamily CLM_3644 IPR027304 Trigger factor/SurA domain superfamily CLM_3644 IPR008881 Trigger factor, ribosome-binding, bacterial CLM_3644 IPR005215 Trigger factor CLM_3644 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CLM_3645 IPR013022 Xylose isomerase-like, TIM barrel domain CLM_3645 IPR036237 Xylose isomerase-like superfamily CLM_3647 IPR029057 Phosphoribosyltransferase-like CLM_3647 IPR000836 Phosphoribosyltransferase domain CLM_3647 IPR023031 Orotate phosphoribosyltransferase CLM_3647 IPR006273 Orotate phosphoribosyltransferase, bacterial CLM_3648 IPR033888 Dihydroorotate dehydrogenase, class 1B CLM_3648 IPR001295 Dihydroorotate dehydrogenase, conserved site CLM_3648 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 CLM_3648 IPR024920 Dihydroorotate dehydrogenase, class 1 CLM_3648 IPR005720 Dihydroorotate dehydrogenase domain CLM_3648 IPR013785 Aldolase-type TIM barrel CLM_3649 IPR017927 FAD-binding domain, ferredoxin reductase-type CLM_3649 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_3649 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_3649 IPR017938 Riboflavin synthase-like beta-barrel CLM_3649 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit CLM_3649 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily CLM_3649 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit CLM_3650 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 CLM_3650 IPR013785 Aldolase-type TIM barrel CLM_3650 IPR011060 Ribulose-phosphate binding barrel CLM_3650 IPR001754 Orotidine 5'-phosphate decarboxylase domain CLM_3651 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_3651 IPR032466 Metal-dependent hydrolase CLM_3651 IPR002195 Dihydroorotase, conserved site CLM_3651 IPR004722 Dihydroorotase CLM_3651 IPR006680 Amidohydrolase-related CLM_3652 IPR002801 Aspartate transcarbamylase regulatory subunit CLM_3652 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal CLM_3652 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily CLM_3652 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily CLM_3652 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal CLM_3653 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CLM_3653 IPR002082 Aspartate carbamoyltransferase CLM_3653 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CLM_3653 IPR006130 Aspartate/ornithine carbamoyltransferase CLM_3653 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CLM_3655 IPR008275 CoA enzyme activase CLM_3655 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_3657 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3658 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3660 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3660 IPR003439 ABC transporter-like CLM_3660 IPR003593 AAA+ ATPase domain CLM_3660 IPR017871 ABC transporter, conserved site CLM_3660 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB CLM_3662 IPR035906 MetI-like superfamily CLM_3662 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLM_3695 IPR029001 Inosine triphosphate pyrophosphatase-like CLM_3695 IPR002637 Ham1-like protein CLM_3695 IPR020922 dITP/XTP pyrophosphatase CLM_3698 IPR000914 Solute-binding protein family 5 domain CLM_3698 IPR023765 Solute-binding protein family 5, conserved site CLM_3698 IPR039424 Solute-binding protein family 5 CLM_3698 IPR030678 Peptide/nickel binding protein, MppA-type CLM_3699 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 CLM_3699 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CLM_3699 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic CLM_3699 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CLM_3699 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site CLM_3699 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CLM_3699 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E CLM_3699 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit CLM_3699 IPR018027 Asn/Gln amidotransferase CLM_3700 IPR020556 Amidase, conserved site CLM_3700 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CLM_3700 IPR000120 Amidase CLM_3700 IPR023631 Amidase signature domain CLM_3700 IPR036928 Amidase signature (AS) superfamily CLM_3701 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C CLM_3701 IPR003837 Glu-tRNAGln amidotransferase C subunit CLM_3704 IPR001357 BRCT domain CLM_3704 IPR004150 NAD-dependent DNA ligase, OB-fold CLM_3704 IPR012340 Nucleic acid-binding, OB-fold CLM_3704 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CLM_3704 IPR013840 NAD-dependent DNA ligase, N-terminal CLM_3704 IPR013839 NAD-dependent DNA ligase, adenylation CLM_3704 IPR001679 NAD-dependent DNA ligase CLM_3704 IPR033136 NAD-dependent DNA ligase, conserved site CLM_3704 IPR041663 DisA/LigA, helix-hairpin-helix motif CLM_3704 IPR036420 BRCT domain superfamily CLM_3704 IPR010994 RuvA domain 2-like CLM_3705 IPR034739 UvrD/AddA helicase, N-terminal CLM_3705 IPR014017 UvrD-like DNA helicase, C-terminal CLM_3705 IPR013986 DExx box DNA helicase domain superfamily CLM_3705 IPR014016 UvrD-like helicase, ATP-binding domain CLM_3705 IPR000212 DNA helicase, UvrD/REP type CLM_3705 IPR005751 ATP-dependent DNA helicase PcrA CLM_3705 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3706 IPR013368 TrpR homologue YerC/YecD CLM_3706 IPR038116 TrpR-like superfamily CLM_3706 IPR010921 Trp repressor/replication initiator CLM_3706 IPR000831 Trp repressor CLM_3707 IPR006145 Pseudouridine synthase, RsuA/RluA CLM_3707 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CLM_3707 IPR036986 RNA-binding S4 domain superfamily CLM_3707 IPR002942 RNA-binding S4 domain CLM_3707 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_3707 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CLM_3707 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CLM_3708 IPR000189 Prokaryotic transglycosylase, active site CLM_3708 IPR023346 Lysozyme-like domain superfamily CLM_3708 IPR008258 Transglycosylase SLT domain 1 CLM_3711 IPR003791 Protein of unknown function UPF0178 CLM_3712 IPR001672 Phosphoglucose isomerase (PGI) CLM_3712 IPR018189 Phosphoglucose isomerase, conserved site CLM_3712 IPR035476 Phosphoglucose isomerase, SIS domain 1 CLM_3712 IPR035482 Phosphoglucose isomerase, SIS domain 2 CLM_3714 IPR009057 Homeobox-like domain superfamily CLM_3714 IPR001647 DNA-binding HTH domain, TetR-type CLM_3714 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_3714 IPR041603 YvdT, C-terminal CLM_3716 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_3716 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM_3716 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CLM_3716 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLM_3716 IPR036291 NAD(P)-binding domain superfamily CLM_3717 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM_3717 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_3717 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CLM_3717 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLM_3717 IPR036291 NAD(P)-binding domain superfamily CLM_3719 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_3719 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_3719 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3719 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3719 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal CLM_3719 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal CLM_3719 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3719 IPR001308 Electron transfer flavoprotein alpha subunit/FixB CLM_3720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3720 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal CLM_3720 IPR012255 Electron transfer flavoprotein, beta subunit CLM_3720 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLM_3720 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site CLM_3721 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLM_3721 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLM_3721 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLM_3721 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLM_3721 IPR006089 Acyl-CoA dehydrogenase, conserved site CLM_3721 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLM_3721 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLM_3722 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3723 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3724 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_3724 IPR008275 CoA enzyme activase CLM_3725 IPR023606 CoA-transferase family III domain superfamily CLM_3725 IPR003673 CoA-transferase family III CLM_3726 IPR025110 AMP-binding enzyme, C-terminal domain CLM_3726 IPR000873 AMP-dependent synthetase/ligase CLM_3726 IPR020845 AMP-binding, conserved site CLM_3727 IPR004685 Branched-chain amino acid transport system II carrier protein CLM_3728 IPR004739 GMP synthase, glutamine amidotransferase CLM_3728 IPR022955 GMP synthase CLM_3728 IPR017926 Glutamine amidotransferase CLM_3728 IPR029062 Class I glutamine amidotransferase-like CLM_3728 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3728 IPR022310 NAD/GMP synthase CLM_3728 IPR025777 GMP synthetase ATP pyrophosphatase domain CLM_3728 IPR001674 GMP synthase, C-terminal CLM_3729 IPR000644 CBS domain CLM_3729 IPR013785 Aldolase-type TIM barrel CLM_3729 IPR005990 Inosine-5'-monophosphate dehydrogenase CLM_3729 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CLM_3729 IPR001093 IMP dehydrogenase/GMP reductase CLM_3731 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase CLM_3731 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type CLM_3731 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3731 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CLM_3732 IPR001844 Chaperonin Cpn60 CLM_3732 IPR002423 Chaperonin Cpn60/TCP-1 family CLM_3732 IPR018370 Chaperonin Cpn60, conserved site CLM_3732 IPR027413 GroEL-like equatorial domain superfamily CLM_3732 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CLM_3732 IPR027409 GroEL-like apical domain superfamily CLM_3733 IPR020818 GroES chaperonin family CLM_3733 IPR037124 GroES chaperonin superfamily CLM_3733 IPR011032 GroES-like superfamily CLM_3733 IPR018369 Chaperonin GroES, conserved site CLM_3734 IPR032816 SNARE associated Golgi protein CLM_3734 IPR015414 Transmembrane protein TMEM64 CLM_3738 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain CLM_3738 IPR009051 Alpha-helical ferredoxin CLM_3738 IPR023753 FAD/NAD(P)-binding domain CLM_3738 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3738 IPR028261 Dihydroprymidine dehydrogenase domain II CLM_3738 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily CLM_3739 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_3739 IPR017938 Riboflavin synthase-like beta-barrel CLM_3739 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLM_3739 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_3739 IPR017927 FAD-binding domain, ferredoxin reductase-type CLM_3739 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit CLM_3740 IPR022876 Redox-sensing transcriptional repressor Rex CLM_3740 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3740 IPR036390 Winged helix DNA-binding domain superfamily CLM_3740 IPR003781 CoA-binding CLM_3740 IPR009718 Rex DNA-binding, C-terminal domain CLM_3740 IPR036291 NAD(P)-binding domain superfamily CLM_3741 IPR032524 ABC transporter Uup, C-terminal CLM_3741 IPR003593 AAA+ ATPase domain CLM_3741 IPR003439 ABC transporter-like CLM_3741 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLM_3741 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3741 IPR017871 ABC transporter, conserved site CLM_3741 IPR032781 ABC-transporter extension domain CLM_3742 IPR007492 LytTR DNA-binding domain CLM_3742 IPR011006 CheY-like superfamily CLM_3742 IPR001789 Signal transduction response regulator, receiver domain CLM_3743 IPR010559 Signal transduction histidine kinase, internal region CLM_3743 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3743 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CLM_3743 IPR003018 GAF domain CLM_3744 IPR003706 CstA, N-terminal domain CLM_3745 IPR013578 Peptidase M16C associated CLM_3745 IPR007863 Peptidase M16, C-terminal CLM_3745 IPR011765 Peptidase M16, N-terminal CLM_3745 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLM_3746 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLM_3746 IPR011761 ATP-grasp fold CLM_3746 IPR005481 Biotin carboxylase-like, N-terminal domain CLM_3746 IPR016185 Pre-ATP-grasp domain superfamily CLM_3746 IPR000891 Pyruvate carboxyltransferase CLM_3746 IPR005930 Pyruvate carboxylase CLM_3746 IPR011054 Rudiment single hybrid motif CLM_3746 IPR011053 Single hybrid motif CLM_3746 IPR000089 Biotin/lipoyl attachment CLM_3746 IPR011764 Biotin carboxylation domain CLM_3746 IPR005482 Biotin carboxylase, C-terminal CLM_3746 IPR003379 Carboxylase, conserved domain CLM_3746 IPR013785 Aldolase-type TIM barrel CLM_3747 IPR000905 Gcp-like domain CLM_3747 IPR017861 Kae1/TsaD family CLM_3747 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD CLM_3750 IPR023753 FAD/NAD(P)-binding domain CLM_3750 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3750 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLM_3750 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B CLM_3750 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_3754 IPR006127 Periplasmic solute binding protein, ZnuA-like CLM_3754 IPR006128 Adhesion lipoprotein CLM_3754 IPR006129 Adhesin B CLM_3755 IPR006674 HD domain CLM_3755 IPR006675 HDIG domain CLM_3755 IPR037522 HD-GYP domain CLM_3755 IPR003607 HD/PDEase domain CLM_3756 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE CLM_3756 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3757 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB CLM_3757 IPR000905 Gcp-like domain CLM_3758 IPR006464 N-acetyltransferase RimI/Ard1 CLM_3758 IPR000182 GNAT domain CLM_3758 IPR016181 Acyl-CoA N-acyltransferase CLM_3759 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_3759 IPR002305 Aminoacyl-tRNA synthetase, class Ic CLM_3759 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3759 IPR036986 RNA-binding S4 domain superfamily CLM_3759 IPR002307 Tyrosine-tRNA ligase CLM_3759 IPR002942 RNA-binding S4 domain CLM_3759 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 CLM_3759 IPR024088 Tyrosine-tRNA ligase, bacterial-type CLM_3765 IPR005225 Small GTP-binding protein domain CLM_3765 IPR000795 Transcription factor, GTP-binding domain CLM_3765 IPR041732 Peptide chain release factor 3, GTP-binding domain CLM_3765 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CLM_3765 IPR032090 Peptide chain release factor 3, C-terminal CLM_3765 IPR004548 Peptide chain release factor 3 CLM_3765 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3765 IPR035647 EF-G domain III/V-like CLM_3765 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3765 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3765 IPR031157 Tr-type G domain, conserved site CLM_3766 IPR023214 HAD superfamily CLM_3766 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLM_3766 IPR036412 HAD-like superfamily CLM_3766 IPR000150 Cof family CLM_3767 IPR024109 Tryptophan-tRNA ligase, bacterial-type CLM_3767 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3767 IPR002305 Aminoacyl-tRNA synthetase, class Ic CLM_3767 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLM_3767 IPR002306 Tryptophan-tRNA ligase CLM_3769 IPR004793 Desulfoferrodoxin CLM_3769 IPR004462 Desulforodoxin domain CLM_3769 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain CLM_3769 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily CLM_3769 IPR038094 Desulforodoxin domain superfamily CLM_3771 IPR008357 Lantibiotic leader peptide-processing serine protease CLM_3771 IPR023828 Peptidase S8, subtilisin, Ser-active site CLM_3771 IPR015500 Peptidase S8, subtilisin-related CLM_3771 IPR036852 Peptidase S8/S53 domain superfamily CLM_3771 IPR000209 Peptidase S8/S53 domain CLM_3771 IPR022398 Peptidase S8, subtilisin, His-active site CLM_3771 IPR023827 Peptidase S8, subtilisin, Asp-active site CLM_3771 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily CLM_3773 IPR003439 ABC transporter-like CLM_3773 IPR017871 ABC transporter, conserved site CLM_3773 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3773 IPR003593 AAA+ ATPase domain CLM_3778 IPR003439 ABC transporter-like CLM_3778 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3778 IPR017871 ABC transporter, conserved site CLM_3778 IPR003593 AAA+ ATPase domain CLM_3778 IPR011527 ABC transporter type 1, transmembrane domain CLM_3778 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLM_3779 IPR010383 Glycosyl hydrolase 94 CLM_3779 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily CLM_3779 IPR008928 Six-hairpin glycosidase superfamily CLM_3779 IPR012341 Six-hairpin glycosidase-like superfamily CLM_3779 IPR037820 NdvB, GH94N domain 1 CLM_3779 IPR033432 Glycosyl hydrolase 36, catalytic domain CLM_3779 IPR009342 Putative carbohydrate binding domain CLM_3779 IPR019282 Domain of unknown function DUF2329 CLM_3779 IPR011013 Galactose mutarotase-like domain superfamily CLM_3779 IPR037824 NdvB, GH94N domain 2 CLM_3780 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CLM_3780 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CLM_3780 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CLM_3780 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CLM_3780 IPR029066 PLP-binding barrel CLM_3780 IPR000183 Ornithine/DAP/Arg decarboxylase CLM_3780 IPR002986 Diaminopimelate decarboxylase, LysA CLM_3780 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CLM_3781 IPR027795 CASTOR, ACT domain CLM_3781 IPR001048 Aspartate/glutamate/uridylate kinase CLM_3781 IPR041740 Aspartokinase catalytic domain CLM_3781 IPR002912 ACT domain CLM_3781 IPR036393 Acetylglutamate kinase-like superfamily CLM_3781 IPR018042 Aspartate kinase, conserved site CLM_3781 IPR005260 Aspartate kinase, monofunctional class CLM_3781 IPR001341 Aspartate kinase CLM_3783 IPR001948 Peptidase M18 CLM_3783 IPR023358 Peptidase M18, domain 2 CLM_3783 IPR022984 M18 family aminopeptidase 2, putative CLM_3784 IPR027470 Cation efflux protein, cytoplasmic domain CLM_3784 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLM_3784 IPR027469 Cation efflux transmembrane domain superfamily CLM_3784 IPR002524 Cation efflux protein CLM_3786 IPR000212 DNA helicase, UvrD/REP type CLM_3786 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3786 IPR014016 UvrD-like helicase, ATP-binding domain CLM_3786 IPR027785 UvrD-like helicase C-terminal domain CLM_3787 IPR003959 ATPase, AAA-type, core CLM_3787 IPR041569 AAA ATPase, AAA+ lid domain CLM_3787 IPR037219 Peptidase M41-like CLM_3787 IPR000642 Peptidase M41 CLM_3787 IPR005936 Peptidase, FtsH CLM_3787 IPR003960 ATPase, AAA-type, conserved site CLM_3787 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3787 IPR011546 Peptidase M41, FtsH extracellular CLM_3787 IPR003593 AAA+ ATPase domain CLM_3788 IPR002933 Peptidase M20 CLM_3788 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CLM_3788 IPR010964 Peptidase M20A, peptidase V-related CLM_3788 IPR036264 Bacterial exopeptidase dimerisation domain CLM_3789 IPR002316 Proline-tRNA ligase, class IIa CLM_3789 IPR017449 Prolyl-tRNA synthetase, class II CLM_3789 IPR016061 Proline-tRNA ligase, class II, C-terminal CLM_3789 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type CLM_3789 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_3789 IPR033721 Prolyl-tRNA synthetase, catalytic domain CLM_3789 IPR036621 Anticodon-binding domain superfamily CLM_3789 IPR004154 Anticodon-binding CLM_3789 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_3790 IPR035901 GIY-YIG endonuclease superfamily CLM_3790 IPR000305 GIY-YIG endonuclease CLM_3792 IPR003439 ABC transporter-like CLM_3792 IPR017871 ABC transporter, conserved site CLM_3792 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3792 IPR003593 AAA+ ATPase domain CLM_3792 IPR025302 Domain of unknown function DUF4162 CLM_3794 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLM_3794 IPR013325 RNA polymerase sigma factor, region 2 CLM_3794 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3794 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3794 IPR039425 RNA polymerase sigma-70 like CLM_3794 IPR007627 RNA polymerase sigma-70 region 2 CLM_3794 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLM_3794 IPR014284 RNA polymerase sigma-70 like domain CLM_3795 IPR036513 STAS domain superfamily CLM_3795 IPR001902 SLC26A/SulP transporter CLM_3795 IPR011547 SLC26A/SulP transporter domain CLM_3795 IPR002645 STAS domain CLM_3796 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_3796 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_3796 IPR005467 Histidine kinase domain CLM_3796 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3796 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3796 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_3797 IPR016032 Signal transduction response regulator, C-terminal effector CLM_3797 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_3797 IPR039420 Transcriptional regulatory protein WalR-like CLM_3797 IPR001789 Signal transduction response regulator, receiver domain CLM_3797 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3797 IPR011006 CheY-like superfamily CLM_3799 IPR003439 ABC transporter-like CLM_3799 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3799 IPR017871 ABC transporter, conserved site CLM_3799 IPR003593 AAA+ ATPase domain CLM_3803 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type CLM_3804 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit CLM_3804 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily CLM_3805 IPR013012 Phosphotransferase system, EIIB component, type 3 CLM_3805 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLM_3805 IPR036095 PTS system IIB component-like superfamily CLM_3806 IPR003593 AAA+ ATPase domain CLM_3806 IPR011608 PRD domain CLM_3806 IPR001550 Transcription antiterminator, conserved site CLM_3806 IPR036390 Winged helix DNA-binding domain superfamily CLM_3806 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_3806 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3806 IPR033887 PTS system mannose/sorbose specific IIA subunit CLM_3806 IPR004701 Phosphotransferase system, mannose-type IIA component CLM_3806 IPR036634 PRD domain superfamily CLM_3806 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3806 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily CLM_3807 IPR004796 Phosphotransferase system, cellobiose-type IIC component CLM_3807 IPR004501 Phosphotransferase system, EIIC component, type 3 CLM_3807 IPR003352 Phosphotransferase system, EIIC CLM_3808 IPR001088 Glycoside hydrolase, family 4 CLM_3808 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLM_3808 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLM_3808 IPR036291 NAD(P)-binding domain superfamily CLM_3808 IPR019802 Glycoside hydrolase, family 4, conserved site CLM_3809 IPR013515 Phytochrome, central region CLM_3809 IPR029787 Nucleotide cyclase CLM_3809 IPR000160 GGDEF domain CLM_3809 IPR029016 GAF-like domain superfamily CLM_3809 IPR003018 GAF domain CLM_3809 IPR035919 EAL domain superfamily CLM_3809 IPR001633 EAL domain CLM_3809 IPR001294 Phytochrome CLM_3809 IPR016132 Phytochrome chromophore attachment domain CLM_3810 IPR004107 Integrase, SAM-like, N-terminal CLM_3810 IPR002104 Integrase, catalytic domain CLM_3810 IPR013762 Integrase-like, catalytic domain superfamily CLM_3810 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLM_3810 IPR010998 Integrase/recombinase, N-terminal CLM_3811 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic CLM_3811 IPR016067 S-adenosylmethionine decarboxylase, core CLM_3811 IPR017716 S-adenosylmethionine decarboxylase proenzyme CLM_3814 IPR009057 Homeobox-like domain superfamily CLM_3817 IPR018170 Aldo/keto reductase, conserved site CLM_3817 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_3817 IPR023210 NADP-dependent oxidoreductase domain CLM_3817 IPR020471 Aldo/keto reductase CLM_3818 IPR029039 Flavoprotein-like superfamily CLM_3818 IPR005025 NADPH-dependent FMN reductase-like CLM_3819 IPR009061 Putative DNA-binding domain superfamily CLM_3819 IPR000551 MerR-type HTH domain CLM_3820 IPR016192 APOBEC/CMP deaminase, zinc-binding CLM_3820 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_3820 IPR016193 Cytidine deaminase-like CLM_3820 IPR006262 Cytidine deaminase, homotetrameric CLM_3822 IPR018062 HTH domain AraC-type, conserved site CLM_3822 IPR011256 Regulatory factor, effector binding domain superfamily CLM_3822 IPR029442 GyrI-like small molecule binding domain CLM_3822 IPR009057 Homeobox-like domain superfamily CLM_3822 IPR018060 DNA binding HTH domain, AraC-type CLM_3822 IPR010499 Bacterial transcription activator, effector binding CLM_3822 IPR020449 Transcription regulator HTH, AraC- type CLM_3823 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CLM_3823 IPR024072 Dihydrofolate reductase-like domain superfamily CLM_3827 IPR030489 Transcription regulator Rrf2-type, conserved site CLM_3827 IPR000944 Transcription regulator Rrf2-type CLM_3827 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3827 IPR036390 Winged helix DNA-binding domain superfamily CLM_3828 IPR000182 GNAT domain CLM_3828 IPR010167 Amino-acid N-acetyltransferase CLM_3828 IPR016181 Acyl-CoA N-acyltransferase CLM_3829 IPR010280 (Uracil-5)-methyltransferase family CLM_3829 IPR002792 TRAM domain CLM_3829 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3829 IPR012340 Nucleic acid-binding, OB-fold CLM_3829 IPR030390 RNA methyltransferase TrmA, active site CLM_3834 IPR036918 Pyruvate kinase, C-terminal domain superfamily CLM_3834 IPR015795 Pyruvate kinase, C-terminal CLM_3834 IPR015793 Pyruvate kinase, barrel CLM_3834 IPR011037 Pyruvate kinase-like, insert domain superfamily CLM_3834 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLM_3834 IPR001697 Pyruvate kinase CLM_3834 IPR015806 Pyruvate kinase, insert domain superfamily CLM_3834 IPR040442 Pyruvate kinase-like domain superfamily CLM_3835 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type CLM_3835 IPR022953 ATP-dependent 6-phosphofructokinase CLM_3835 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic CLM_3835 IPR035966 Phosphofructokinase superfamily CLM_3835 IPR000023 Phosphofructokinase domain CLM_3835 IPR015912 Phosphofructokinase, conserved site CLM_3836 IPR040982 DNA polymerase III alpha subunit finger domain CLM_3836 IPR004805 DNA polymerase III, alpha subunit CLM_3836 IPR016195 Polymerase/histidinol phosphatase-like CLM_3836 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_3836 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_3836 IPR029460 DNA polymerase, helix-hairpin-helix motif CLM_3836 IPR004013 PHP domain CLM_3836 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain CLM_3836 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CLM_3837 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain CLM_3837 IPR003802 Sporulation regulator WhiA CLM_3837 IPR023054 Sporulation regulator WhiA, C-terminal CLM_3837 IPR004042 Intein DOD homing endonuclease CLM_3837 IPR027434 Homing endonuclease CLM_3837 IPR039518 WhiA, LAGLIDADG-like domain CLM_3837 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3838 IPR010119 Gluconeogenesis factor CLM_3838 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CLM_3838 IPR038136 Gluconeogenesis factor superfamily CLM_3839 IPR005337 RapZ-like family CLM_3839 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3840 IPR006094 FAD linked oxidase, N-terminal CLM_3840 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily CLM_3840 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal CLM_3840 IPR016166 FAD-binding domain, PCMH-type CLM_3840 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3840 IPR016167 FAD-binding, type PCMH, subdomain 1 CLM_3840 IPR036318 FAD-binding, type PCMH-like superfamily CLM_3840 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase CLM_3841 IPR016195 Polymerase/histidinol phosphatase-like CLM_3841 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_3841 IPR023710 Probable phosphatase YcdX CLM_3842 IPR041663 DisA/LigA, helix-hairpin-helix motif CLM_3842 IPR010994 RuvA domain 2-like CLM_3842 IPR001943 UVR domain CLM_3842 IPR001162 UvrC family homology region CLM_3842 IPR004791 UvrABC system, subunit C CLM_3842 IPR036876 UVR domain superfamily CLM_3842 IPR038476 UvrC homology region 2 superfamily CLM_3842 IPR000305 GIY-YIG endonuclease CLM_3842 IPR035901 GIY-YIG endonuclease superfamily CLM_3843 IPR016956 Inner membrane protein YdjM CLM_3843 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CLM_3845 IPR001460 Penicillin-binding protein, transpeptidase CLM_3845 IPR012338 Beta-lactamase/transpeptidase-like CLM_3846 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLM_3846 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLM_3847 IPR008984 SMAD/FHA domain superfamily CLM_3847 IPR042287 FhaA, N-terminal CLM_3847 IPR022128 Domain of unknown function DUF3662 CLM_3847 IPR000253 Forkhead-associated (FHA) domain CLM_3848 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3848 IPR017871 ABC transporter, conserved site CLM_3848 IPR004602 UvrABC system subunit A CLM_3848 IPR003439 ABC transporter-like CLM_3848 IPR041102 UvrA, interaction domain CLM_3848 IPR041552 UvrA DNA-binding domain CLM_3849 IPR004807 UvrABC system, subunit B CLM_3849 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_3849 IPR036876 UVR domain superfamily CLM_3849 IPR024759 UvrB, YAD/RRR-motif-containing domain CLM_3849 IPR006935 Helicase/UvrB, N-terminal CLM_3849 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3849 IPR001943 UVR domain CLM_3849 IPR041471 UvrB, interaction domain CLM_3849 IPR001650 Helicase, C-terminal CLM_3850 IPR008915 Peptidase M50 CLM_3850 IPR041489 PDZ domain 6 CLM_3850 IPR001478 PDZ domain CLM_3850 IPR036034 PDZ superfamily CLM_3850 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CLM_3851 IPR036034 PDZ superfamily CLM_3851 IPR036366 PGBD superfamily CLM_3851 IPR002477 Peptidoglycan binding-like CLM_3851 IPR005151 Tail specific protease CLM_3851 IPR004447 C-terminal-processing peptidase S41A CLM_3851 IPR041489 PDZ domain 6 CLM_3851 IPR001478 PDZ domain CLM_3851 IPR036365 PGBD-like superfamily CLM_3851 IPR029045 ClpP/crotonase-like domain superfamily CLM_3852 IPR040690 FtsX, extracellular domain CLM_3852 IPR004513 Cell division protein FtsX CLM_3852 IPR003838 ABC transporter permease protein domain CLM_3853 IPR003439 ABC transporter-like CLM_3853 IPR017871 ABC transporter, conserved site CLM_3853 IPR005286 Cell division protein FtsE, ATP-binding CLM_3853 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3853 IPR003593 AAA+ ATPase domain CLM_3854 IPR003740 Uncharacterised membrane protein YitT CLM_3854 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_3854 IPR019264 Domain of unknown function DUF2179 CLM_3856 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_3856 IPR029061 Thiamin diphosphate-binding fold CLM_3856 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLM_3856 IPR033248 Transketolase, C-terminal domain CLM_3857 IPR005474 Transketolase, N-terminal CLM_3857 IPR029061 Thiamin diphosphate-binding fold CLM_3858 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CLM_3858 IPR003477 mRNA interferase PemK-like CLM_3859 IPR013321 Arc-type ribbon-helix-helix CLM_3859 IPR002145 Ribbon-helix-helix protein, CopG CLM_3859 IPR010985 Ribbon-helix-helix CLM_3860 IPR011079 Alanine racemase, C-terminal CLM_3860 IPR000821 Alanine racemase CLM_3860 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CLM_3860 IPR001608 Alanine racemase, N-terminal CLM_3860 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CLM_3860 IPR029066 PLP-binding barrel CLM_3862 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase CLM_3862 IPR017953 Carbohydrate kinase, predicted, conserved site CLM_3862 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr CLM_3862 IPR029056 Ribokinase-like CLM_3862 IPR036652 YjeF N-terminal domain superfamily CLM_3862 IPR004443 YjeF N-terminal domain CLM_3863 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CLM_3863 IPR008278 4'-phosphopantetheinyl transferase domain CLM_3863 IPR002582 Holo-[acyl carrier protein] synthase CLM_3863 IPR004568 Phosphopantetheine-protein transferase domain CLM_3867 IPR017039 Virulence factor BrkB CLM_3869 IPR005709 Ribosomal protein S4, bacterial-type CLM_3869 IPR001912 Ribosomal protein S4/S9, N-terminal CLM_3869 IPR022801 Ribosomal protein S4/S9 CLM_3869 IPR036986 RNA-binding S4 domain superfamily CLM_3869 IPR002942 RNA-binding S4 domain CLM_3870 IPR023025 Serine/threonine transporter SstT CLM_3870 IPR036458 Sodium:dicarboxylate symporter superfamily CLM_3870 IPR001991 Sodium:dicarboxylate symporter CLM_3872 IPR000551 MerR-type HTH domain CLM_3872 IPR029442 GyrI-like small molecule binding domain CLM_3872 IPR009061 Putative DNA-binding domain superfamily CLM_3872 IPR010499 Bacterial transcription activator, effector binding CLM_3872 IPR011256 Regulatory factor, effector binding domain superfamily CLM_3874 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone CLM_3874 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily CLM_3874 IPR001424 Superoxide dismutase, copper/zinc binding domain CLM_3875 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3875 IPR001347 Sugar isomerase (SIS) CLM_3875 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising CLM_3875 IPR035490 GlmS/FrlB, SIS domain 2 CLM_3875 IPR035466 GlmS/AgaS, SIS domain 1 CLM_3875 IPR017932 Glutamine amidotransferase type 2 domain CLM_3877 IPR001585 Transaldolase/Fructose-6-phosphate aldolase CLM_3877 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial CLM_3877 IPR018225 Transaldolase, active site CLM_3877 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase CLM_3877 IPR022999 Transaldolase type 3B, putative CLM_3877 IPR013785 Aldolase-type TIM barrel CLM_3878 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_3878 IPR023214 HAD superfamily CLM_3878 IPR036412 HAD-like superfamily CLM_3878 IPR006439 HAD hydrolase, subfamily IA CLM_3878 IPR041492 Haloacid dehalogenase-like hydrolase CLM_3879 IPR036291 NAD(P)-binding domain superfamily CLM_3879 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLM_3879 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3880 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component CLM_3880 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily CLM_3880 IPR018454 Phosphotransferase system, glucitol/sorbitol-specific IIA component, subgroup CLM_3881 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal CLM_3881 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II CLM_3881 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal CLM_3882 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor CLM_3884 IPR020843 Polyketide synthase, enoylreductase domain CLM_3884 IPR036291 NAD(P)-binding domain superfamily CLM_3884 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLM_3884 IPR013154 Alcohol dehydrogenase, N-terminal CLM_3884 IPR013149 Alcohol dehydrogenase, C-terminal CLM_3884 IPR011032 GroES-like superfamily CLM_3885 IPR011991 ArsR-like helix-turn-helix domain CLM_3885 IPR007324 Sugar-binding domain, putative CLM_3885 IPR037171 NagB/RpiA transferase-like CLM_3885 IPR009057 Homeobox-like domain superfamily CLM_3885 IPR025246 Transposase IS30-like HTH domain CLM_3886 IPR016066 Alpha-D-phosphohexomutase, conserved site CLM_3886 IPR005841 Alpha-D-phosphohexomutase superfamily CLM_3886 IPR006352 Phosphoglucosamine mutase, bacterial type CLM_3886 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CLM_3886 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CLM_3886 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CLM_3886 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CLM_3886 IPR005843 Alpha-D-phosphohexomutase, C-terminal CLM_3886 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CLM_3889 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CLM_3889 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain CLM_3889 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit CLM_3889 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal CLM_3889 IPR029061 Thiamin diphosphate-binding fold CLM_3889 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLM_3889 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain CLM_3892 IPR000890 Aliphatic acid kinase, short-chain CLM_3892 IPR023865 Aliphatic acid kinase, short-chain, conserved site CLM_3892 IPR011245 Butyrate kinase CLM_3893 IPR012147 Phosphate acetyl/butyryltransferase CLM_3893 IPR014079 Phosphate butyryltransferase CLM_3893 IPR002505 Phosphate acetyl/butaryl transferase CLM_3894 IPR023865 Aliphatic acid kinase, short-chain, conserved site CLM_3894 IPR000890 Aliphatic acid kinase, short-chain CLM_3894 IPR011245 Butyrate kinase CLM_3895 IPR028348 FAD dependent protein CLM_3895 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3897 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLM_3897 IPR014046 Diadenylate cyclase CLM_3897 IPR034701 Diadenylate cyclase CdaA CLM_3897 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLM_3899 IPR011105 Cell wall hydrolase, SleB CLM_3899 IPR042047 Cell wall hydrolase SleB, domain 1 CLM_3900 IPR023753 FAD/NAD(P)-binding domain CLM_3900 IPR005982 Thioredoxin reductase CLM_3900 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3900 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CLM_3901 IPR036249 Thioredoxin-like superfamily CLM_3901 IPR005746 Thioredoxin CLM_3901 IPR017937 Thioredoxin, conserved site CLM_3901 IPR013766 Thioredoxin domain CLM_3902 IPR033826 Isoaspartyl-dipeptidase CLM_3902 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLM_3902 IPR006680 Amidohydrolase-related CLM_3902 IPR010229 Peptidase M38, beta-aspartyl dipeptidase CLM_3902 IPR032466 Metal-dependent hydrolase CLM_3905 IPR008279 PEP-utilising enzyme, mobile domain CLM_3905 IPR040442 Pyruvate kinase-like domain superfamily CLM_3905 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLM_3905 IPR036618 PtsI, HPr-binding domain superfamily CLM_3905 IPR008731 Phosphotransferase system, enzyme I N-terminal CLM_3905 IPR000121 PEP-utilising enzyme, C-terminal CLM_3905 IPR018274 PEP-utilising enzyme, active site CLM_3905 IPR023151 PEP-utilising enzyme, conserved site CLM_3905 IPR036637 Phosphohistidine domain superfamily CLM_3905 IPR006318 Phosphotransferase system, enzyme I-like CLM_3905 IPR024692 Phosphotransferase system, enzyme I CLM_3906 IPR025944 Sigma-54 interaction domain, conserved site CLM_3906 IPR036291 NAD(P)-binding domain superfamily CLM_3906 IPR003593 AAA+ ATPase domain CLM_3906 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3906 IPR002197 DNA binding HTH domain, Fis-type CLM_3906 IPR009057 Homeobox-like domain superfamily CLM_3906 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3906 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_3906 IPR002078 RNA polymerase sigma factor 54 interaction domain CLM_3906 IPR000014 PAS domain CLM_3906 IPR035965 PAS domain superfamily CLM_3906 IPR013767 PAS fold CLM_3909 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily CLM_3909 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain CLM_3909 IPR020557 Fumarate lyase, conserved site CLM_3909 IPR011167 Iron-dependent fumarate hydratase CLM_3909 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain CLM_3910 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLM_3910 IPR006311 Twin-arginine translocation pathway, signal sequence CLM_3911 IPR003841 Sodium-dependent phosphate transport protein CLM_3911 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein CLM_3912 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3912 IPR000754 Ribosomal protein S9 CLM_3912 IPR023035 Ribosomal protein S9, bacterial/plastid CLM_3912 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3912 IPR020574 Ribosomal protein S9, conserved site CLM_3913 IPR036899 Ribosomal protein L13 superfamily CLM_3913 IPR023563 Ribosomal protein L13, conserved site CLM_3913 IPR005822 Ribosomal protein L13 CLM_3913 IPR005823 Ribosomal protein L13, bacterial-type CLM_3914 IPR020095 Pseudouridine synthase I, TruA, C-terminal CLM_3914 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CLM_3914 IPR001406 Pseudouridine synthase I, TruA CLM_3914 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLM_3915 IPR003339 ABC/ECF transporter, transmembrane component CLM_3915 IPR024919 ECF transporter transmembrane protein EcfT CLM_3916 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3916 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 CLM_3916 IPR003593 AAA+ ATPase domain CLM_3916 IPR015856 ABC transporter, CbiO/EcfA subunit CLM_3916 IPR003439 ABC transporter-like CLM_3916 IPR017871 ABC transporter, conserved site CLM_3917 IPR003439 ABC transporter-like CLM_3917 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 CLM_3917 IPR015856 ABC transporter, CbiO/EcfA subunit CLM_3917 IPR017871 ABC transporter, conserved site CLM_3917 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3917 IPR003593 AAA+ ATPase domain CLM_3918 IPR036373 Ribosomal protein L17 superfamily CLM_3918 IPR000456 Ribosomal protein L17 CLM_3919 IPR011773 DNA-directed RNA polymerase, alpha subunit CLM_3919 IPR011262 DNA-directed RNA polymerase, insert domain CLM_3919 IPR036643 DNA-directed RNA polymerase, insert domain superfamily CLM_3919 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type CLM_3919 IPR036603 RNA polymerase, RBP11-like subunit CLM_3919 IPR011260 RNA polymerase, alpha subunit, C-terminal CLM_3920 IPR001912 Ribosomal protein S4/S9, N-terminal CLM_3920 IPR018079 Ribosomal protein S4, conserved site CLM_3920 IPR005709 Ribosomal protein S4, bacterial-type CLM_3920 IPR002942 RNA-binding S4 domain CLM_3920 IPR022801 Ribosomal protein S4/S9 CLM_3920 IPR036986 RNA-binding S4 domain superfamily CLM_3921 IPR036967 Ribosomal protein S11 superfamily CLM_3921 IPR001971 Ribosomal protein S11 CLM_3921 IPR018102 Ribosomal S11, conserved site CLM_3921 IPR019981 Ribosomal protein S11, bacterial-type CLM_3922 IPR010979 Ribosomal protein S13-like, H2TH CLM_3922 IPR019980 Ribosomal protein S13, bacterial-type CLM_3922 IPR001892 Ribosomal protein S13 CLM_3922 IPR027437 30s ribosomal protein S13, C-terminal CLM_3922 IPR018269 Ribosomal protein S13, conserved site CLM_3923 IPR000473 Ribosomal protein L36 CLM_3923 IPR035977 Ribosomal protein L36 superfamily CLM_3924 IPR004368 Translation initiation factor IF-1 CLM_3924 IPR022967 RNA-binding domain, S1 CLM_3924 IPR012340 Nucleic acid-binding, OB-fold CLM_3924 IPR006196 RNA-binding domain, S1, IF1 type CLM_3926 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CLM_3926 IPR001714 Peptidase M24, methionine aminopeptidase CLM_3926 IPR036005 Creatinase/aminopeptidase-like CLM_3926 IPR000994 Peptidase M24 CLM_3927 IPR033690 Adenylate kinase, conserved site CLM_3927 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3927 IPR006259 Adenylate kinase subfamily CLM_3927 IPR007862 Adenylate kinase, active site lid domain CLM_3927 IPR000850 Adenylate kinase/UMP-CMP kinase CLM_3928 IPR002208 SecY/SEC61-alpha family CLM_3928 IPR030659 SecY conserved site CLM_3928 IPR023201 SecY domain superfamily CLM_3928 IPR026593 Protein translocase subunit SecY CLM_3929 IPR001196 Ribosomal protein L15, conserved site CLM_3929 IPR005749 Ribosomal protein L15, bacterial-type CLM_3929 IPR030878 Ribosomal protein L15 CLM_3929 IPR036227 Ribosomal L18e/L15P superfamily CLM_3929 IPR021131 Ribosomal protein L18e/L15P CLM_3930 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CLM_3930 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CLM_3930 IPR005996 Ribosomal protein L30, bacterial-type CLM_3931 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3931 IPR013810 Ribosomal protein S5, N-terminal CLM_3931 IPR000851 Ribosomal protein S5 CLM_3931 IPR005324 Ribosomal protein S5, C-terminal CLM_3931 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3931 IPR018192 Ribosomal protein S5, N-terminal, conserved site CLM_3931 IPR005712 Ribosomal protein S5, bacterial-type CLM_3932 IPR004389 Ribosomal protein L18, bacterial-type CLM_3932 IPR005484 Ribosomal protein L18 CLM_3933 IPR002358 Ribosomal protein L6, conserved site CLM_3933 IPR000702 Ribosomal protein L6 CLM_3933 IPR019906 Ribosomal protein L6, bacterial-type CLM_3933 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily CLM_3933 IPR020040 Ribosomal protein L6, alpha-beta domain CLM_3934 IPR035987 Ribosomal protein S8 superfamily CLM_3934 IPR000630 Ribosomal protein S8 CLM_3935 IPR001209 Ribosomal protein S14 CLM_3935 IPR023053 Ribosomal protein S14, type Z CLM_3936 IPR022803 Ribosomal protein L5 domain superfamily CLM_3936 IPR020929 Ribosomal protein L5, conserved site CLM_3936 IPR031310 Ribosomal protein L5, N-terminal CLM_3936 IPR020930 Ribosomal protein L5, bacterial-type CLM_3936 IPR031309 Ribosomal protein L5, C-terminal CLM_3936 IPR002132 Ribosomal protein L5 CLM_3937 IPR003256 Ribosomal protein L24 CLM_3937 IPR014722 Ribosomal protein L2, domain 2 CLM_3937 IPR005824 KOW CLM_3937 IPR008991 Translation protein SH3-like domain superfamily CLM_3937 IPR041988 Ribosomal Protein L26/L24, KOW domain CLM_3938 IPR019972 Ribosomal protein L14P, conserved site CLM_3938 IPR036853 Ribosomal protein L14 superfamily CLM_3938 IPR005745 Ribosomal protein L14P, bacterial-type CLM_3938 IPR000218 Ribosomal protein L14P CLM_3939 IPR000266 Ribosomal protein S17/S11 CLM_3939 IPR019984 30S ribosomal protein S17 CLM_3939 IPR012340 Nucleic acid-binding, OB-fold CLM_3940 IPR036049 Ribosomal protein L29/L35 superfamily CLM_3940 IPR001854 Ribosomal protein L29/L35 CLM_3940 IPR018254 Ribosomal protein L29, conserved site CLM_3941 IPR000114 Ribosomal protein L16 CLM_3941 IPR036920 Ribosomal protein L10e/L16 superfamily CLM_3941 IPR016180 Ribosomal protein L10e/L16 CLM_3941 IPR020798 Ribosomal protein L16, conserved site CLM_3942 IPR004087 K Homology domain CLM_3942 IPR015946 K homology domain-like, alpha/beta CLM_3942 IPR009019 K homology domain superfamily, prokaryotic type CLM_3942 IPR005704 Ribosomal protein S3, bacterial-type CLM_3942 IPR001351 Ribosomal protein S3, C-terminal CLM_3942 IPR036419 Ribosomal protein S3, C-terminal domain superfamily CLM_3942 IPR018280 Ribosomal protein S3, conserved site CLM_3942 IPR004044 K Homology domain, type 2 CLM_3943 IPR001063 Ribosomal protein L22/L17 CLM_3943 IPR036394 Ribosomal protein L22/L17 superfamily CLM_3943 IPR018260 Ribosomal protein L22/L17, conserved site CLM_3943 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type CLM_3944 IPR023575 Ribosomal protein S19, superfamily CLM_3944 IPR002222 Ribosomal protein S19/S15 CLM_3944 IPR020934 Ribosomal protein S19 conserved site CLM_3944 IPR005732 Ribosomal protein S19, bacterial-type CLM_3945 IPR008991 Translation protein SH3-like domain superfamily CLM_3945 IPR014726 Ribosomal protein L2, domain 3 CLM_3945 IPR022671 Ribosomal protein L2, conserved site CLM_3945 IPR022669 Ribosomal protein L2, C-terminal CLM_3945 IPR005880 Ribosomal protein L2, bacterial/organellar-type CLM_3945 IPR002171 Ribosomal protein L2 CLM_3945 IPR014722 Ribosomal protein L2, domain 2 CLM_3945 IPR022666 Ribosomal Proteins L2, RNA binding domain CLM_3945 IPR012340 Nucleic acid-binding, OB-fold CLM_3946 IPR001014 Ribosomal protein L23/L25, conserved site CLM_3946 IPR013025 Ribosomal protein L25/L23 CLM_3946 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLM_3946 IPR012678 Ribosomal protein L23/L15e core domain superfamily CLM_3947 IPR013005 50S ribosomal protein uL4 CLM_3947 IPR002136 Ribosomal protein L4/L1e CLM_3947 IPR023574 Ribosomal protein L4 domain superfamily CLM_3948 IPR019926 Ribosomal protein L3, conserved site CLM_3948 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3948 IPR019927 Ribosomal protein L3, bacterial/organelle-type CLM_3948 IPR000597 Ribosomal protein L3 CLM_3949 IPR027486 Ribosomal protein S10 domain CLM_3949 IPR036838 Ribosomal protein S10 domain superfamily CLM_3949 IPR001848 Ribosomal protein S10 CLM_3949 IPR018268 Ribosomal protein S10, conserved site CLM_3950 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3950 IPR033720 Elongation factor Tu, domain 2 CLM_3950 IPR031157 Tr-type G domain, conserved site CLM_3950 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3950 IPR000795 Transcription factor, GTP-binding domain CLM_3950 IPR005225 Small GTP-binding protein domain CLM_3950 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLM_3950 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CLM_3950 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CLM_3950 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3950 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CLM_3951 IPR035649 EFG, domain V CLM_3951 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3951 IPR035647 EF-G domain III/V-like CLM_3951 IPR000640 Elongation factor EFG, domain V-like CLM_3951 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3951 IPR000795 Transcription factor, GTP-binding domain CLM_3951 IPR004540 Translation elongation factor EFG/EF2 CLM_3951 IPR031157 Tr-type G domain, conserved site CLM_3951 IPR005517 Translation elongation factor EFG/EF2, domain IV CLM_3951 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3951 IPR041095 Elongation Factor G, domain II CLM_3951 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3951 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3951 IPR009022 Elongation factor G, domain III CLM_3951 IPR005225 Small GTP-binding protein domain CLM_3952 IPR000235 Ribosomal protein S5/S7 CLM_3952 IPR005717 Ribosomal protein S7, bacterial/organellar-type CLM_3952 IPR020606 Ribosomal protein S7, conserved site CLM_3952 IPR023798 Ribosomal protein S7 domain CLM_3952 IPR036823 Ribosomal protein S7 domain superfamily CLM_3953 IPR012340 Nucleic acid-binding, OB-fold CLM_3953 IPR006032 Ribosomal protein S12/S23 CLM_3953 IPR005679 Ribosomal protein S12, bacterial-type CLM_3954 IPR023460 Ribosomal protein L7Ae, putative CLM_3954 IPR000948 Ribosomal protein L7Ae, prokaryotes CLM_3954 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CLM_3954 IPR029064 50S ribosomal protein L30e-like CLM_3955 IPR006592 RNA polymerase, N-terminal CLM_3955 IPR042102 RNA polymerase Rpb1, domain 3 superfamily CLM_3955 IPR007080 RNA polymerase Rpb1, domain 1 CLM_3955 IPR012754 DNA-directed RNA polymerase, subunit beta-prime CLM_3955 IPR007066 RNA polymerase Rpb1, domain 3 CLM_3955 IPR007081 RNA polymerase Rpb1, domain 5 CLM_3955 IPR007083 RNA polymerase Rpb1, domain 4 CLM_3955 IPR038120 RNA polymerase Rpb1, funnel domain superfamily CLM_3955 IPR000722 RNA polymerase, alpha subunit CLM_3956 IPR007642 RNA polymerase Rpb2, domain 2 CLM_3956 IPR007644 RNA polymerase, beta subunit, protrusion CLM_3956 IPR007121 RNA polymerase, beta subunit, conserved site CLM_3956 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type CLM_3956 IPR037034 RNA polymerase Rpb2, domain 2 superfamily CLM_3956 IPR007641 RNA polymerase Rpb2, domain 7 CLM_3956 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain CLM_3956 IPR007645 RNA polymerase Rpb2, domain 3 CLM_3956 IPR015712 DNA-directed RNA polymerase, subunit 2 CLM_3956 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain CLM_3956 IPR014724 RNA polymerase Rpb2, OB-fold CLM_3956 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily CLM_3957 IPR000206 Ribosomal protein L7/L12 CLM_3957 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily CLM_3957 IPR013823 Ribosomal protein L7/L12, C-terminal CLM_3957 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CLM_3957 IPR008932 Ribosomal protein L7/L12, oligomerisation CLM_3958 IPR001790 Ribosomal protein L10P CLM_3958 IPR022973 Ribosomal protein L10 CLM_3959 IPR023673 Ribosomal protein L1, conserved site CLM_3959 IPR005878 Ribosomal protein L1, bacterial-type CLM_3959 IPR002143 Ribosomal protein L1 CLM_3959 IPR023674 Ribosomal protein L1-like CLM_3959 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CLM_3959 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CLM_3960 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CLM_3960 IPR020784 Ribosomal protein L11, N-terminal CLM_3960 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CLM_3960 IPR020783 Ribosomal protein L11, C-terminal CLM_3960 IPR006519 Ribosomal protein L11, bacterial-type CLM_3960 IPR000911 Ribosomal protein L11/L12 CLM_3961 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CLM_3961 IPR001062 Transcription antitermination protein, NusG CLM_3961 IPR005824 KOW CLM_3961 IPR006645 NusG, N-terminal CLM_3961 IPR008991 Translation protein SH3-like domain superfamily CLM_3961 IPR036735 NusG, N-terminal domain superfamily CLM_3961 IPR014722 Ribosomal protein L2, domain 2 CLM_3963 IPR001705 Ribosomal protein L33 CLM_3963 IPR018264 Ribosomal protein L33, conserved site CLM_3963 IPR011332 Zinc-binding ribosomal protein CLM_3963 IPR038584 Ribosomal protein L33 superfamily CLM_3964 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CLM_3964 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3964 IPR033720 Elongation factor Tu, domain 2 CLM_3964 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3964 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CLM_3964 IPR000795 Transcription factor, GTP-binding domain CLM_3964 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLM_3964 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CLM_3964 IPR031157 Tr-type G domain, conserved site CLM_3964 IPR005225 Small GTP-binding protein domain CLM_3964 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3967 IPR014284 RNA polymerase sigma-70 like domain CLM_3967 IPR014218 RNA polymerase sigma-H type CLM_3967 IPR016371 RNA polymerase sigma-H factor CLM_3967 IPR000943 RNA polymerase sigma-70 CLM_3967 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLM_3967 IPR013325 RNA polymerase sigma factor, region 2 CLM_3967 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3967 IPR000792 Transcription regulator LuxR, C-terminal CLM_3967 IPR007627 RNA polymerase sigma-70 region 2 CLM_3969 IPR001537 tRNA/rRNA methyltransferase, SpoU type CLM_3969 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CLM_3969 IPR004441 RNA methyltransferase TrmH family CLM_3969 IPR029064 50S ribosomal protein L30e-like CLM_3969 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_3969 IPR029028 Alpha/beta knot methyltransferases CLM_3970 IPR036098 Thymidylate synthase ThyX superfamily CLM_3970 IPR003669 Thymidylate synthase ThyX CLM_3971 IPR036389 Ribonuclease III, endonuclease domain superfamily CLM_3971 IPR000999 Ribonuclease III domain CLM_3971 IPR008226 Mini-ribonuclease 3 family CLM_3972 IPR032678 tRNA synthetases class I, catalytic domain CLM_3972 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3972 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLM_3972 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase CLM_3972 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR CLM_3972 IPR015803 Cysteine-tRNA ligase CLM_3973 IPR002912 ACT domain CLM_3973 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CLM_3973 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_3973 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_3973 IPR005789 Threonine dehydratase, catabolic CLM_3974 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type CLM_3974 IPR033730 Prokaryote proline-tRNA ligase core domain CLM_3974 IPR002316 Proline-tRNA ligase, class IIa CLM_3974 IPR036621 Anticodon-binding domain superfamily CLM_3974 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CLM_3974 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_3974 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_3974 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CLM_3974 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 CLM_3974 IPR004154 Anticodon-binding CLM_3975 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLM_3975 IPR034683 Cytidylyltransferase IspD/TarI CLM_3975 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3975 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site CLM_3976 IPR002716 PIN domain CLM_3976 IPR002792 TRAM domain CLM_3976 IPR029060 PIN-like domain superfamily CLM_3978 IPR018906 DNA integrity scanning, DisA, linker region CLM_3978 IPR023763 DNA integrity scanning protein, DisA CLM_3978 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLM_3978 IPR038331 DisA, linker domain superfamily CLM_3978 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLM_3978 IPR010994 RuvA domain 2-like CLM_3979 IPR041166 LapB, rubredoxin metal binding domain CLM_3979 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3979 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3979 IPR004504 DNA repair protein RadA CLM_3979 IPR003593 AAA+ ATPase domain CLM_3979 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CLM_3979 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3980 IPR001943 UVR domain CLM_3980 IPR001270 ClpA/B family CLM_3980 IPR018368 ClpA/B, conserved site 1 CLM_3980 IPR003593 AAA+ ATPase domain CLM_3980 IPR028299 ClpA/B, conserved site 2 CLM_3980 IPR036628 Clp, N-terminal domain superfamily CLM_3980 IPR003959 ATPase, AAA-type, core CLM_3980 IPR019489 Clp ATPase, C-terminal CLM_3980 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3980 IPR041546 ClpA/ClpB, AAA lid domain CLM_3980 IPR004176 Clp, N-terminal CLM_3981 IPR023660 Protein arginine kinase CLM_3981 IPR000749 ATP:guanido phosphotransferase CLM_3981 IPR022415 ATP:guanido phosphotransferase active site CLM_3981 IPR022414 ATP:guanido phosphotransferase, catalytic domain CLM_3981 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CLM_3982 IPR025542 YacH protein CLM_3982 IPR001943 UVR domain CLM_3982 IPR036876 UVR domain superfamily CLM_3983 IPR040465 CtsR, N-terminal HTH domain CLM_3983 IPR041908 CtsR, C-terminal domain superfamily CLM_3983 IPR041902 CtsR, N-terminal domain superfamily CLM_3983 IPR041473 CtsR, C-terminal dimerization domain CLM_3983 IPR008463 Transcriptional regulator CtsR CLM_3985 IPR035647 EF-G domain III/V-like CLM_3985 IPR035649 EFG, domain V CLM_3985 IPR000640 Elongation factor EFG, domain V-like CLM_3985 IPR004161 Translation elongation factor EFTu-like, domain 2 CLM_3985 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3985 IPR031157 Tr-type G domain, conserved site CLM_3985 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3985 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3985 IPR004540 Translation elongation factor EFG/EF2 CLM_3985 IPR005225 Small GTP-binding protein domain CLM_3985 IPR009022 Elongation factor G, domain III CLM_3985 IPR000795 Transcription factor, GTP-binding domain CLM_3985 IPR005517 Translation elongation factor EFG/EF2, domain IV CLM_3985 IPR041095 Elongation Factor G, domain II CLM_3985 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_4002 IPR036565 Mur-like, catalytic domain superfamily CLM_4002 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase CLM_4002 IPR036615 Mur ligase, C-terminal domain superfamily CLM_4002 IPR013221 Mur ligase, central CLM_4003 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_4003 IPR002315 Glycyl-tRNA synthetase CLM_4003 IPR033731 Glycyl-tRNA synthetase-like core domain CLM_4003 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLM_4003 IPR004154 Anticodon-binding CLM_4003 IPR036621 Anticodon-binding domain superfamily CLM_4003 IPR022961 Glycine-tRNA ligase, bacterial CLM_4003 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 CLM_4004 IPR012340 Nucleic acid-binding, OB-fold CLM_4004 IPR006195 Aminoacyl-tRNA synthetase, class II CLM_4004 IPR002313 Lysine-tRNA ligase, class II CLM_4004 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLM_4004 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLM_4004 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CLM_4004 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II CLM_4005 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CLM_4005 IPR028624 Transcription elongation factor GreA/GreB CLM_4005 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CLM_4005 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CLM_4005 IPR006359 Transcription elongation factor GreA CLM_4005 IPR023459 Transcription elongation factor GreA/GreB family CLM_4005 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CLM_4005 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CLM_4007 IPR018517 tRNA-dihydrouridine synthase, conserved site CLM_4007 IPR035587 DUS-like, FMN-binding domain CLM_4007 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 CLM_4007 IPR001269 tRNA-dihydrouridine synthase CLM_4007 IPR013785 Aldolase-type TIM barrel CLM_4007 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal CLM_4008 IPR004619 Type III pantothenate kinase CLM_4009 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4009 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site CLM_4009 IPR000559 Formate-tetrahydrofolate ligase, FTHFS CLM_4010 IPR037219 Peptidase M41-like CLM_4010 IPR000642 Peptidase M41 CLM_4010 IPR003960 ATPase, AAA-type, conserved site CLM_4010 IPR041569 AAA ATPase, AAA+ lid domain CLM_4010 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4010 IPR005936 Peptidase, FtsH CLM_4010 IPR003959 ATPase, AAA-type, core CLM_4010 IPR003593 AAA+ ATPase domain CLM_4012 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CLM_4012 IPR012094 tRNA(Ile)-lysidine synthase CLM_4012 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_4012 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal CLM_4012 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal CLM_4013 IPR014221 Sporulation stage II, protein E CLM_4013 IPR036457 PPM-type phosphatase domain superfamily CLM_4013 IPR001932 PPM-type phosphatase domain CLM_4021 IPR022967 RNA-binding domain, S1 CLM_4021 IPR003029 S1 domain CLM_4021 IPR012340 Nucleic acid-binding, OB-fold CLM_4025 IPR025490 RNA-binding protein, HP1423 type CLM_4025 IPR036986 RNA-binding S4 domain superfamily CLM_4025 IPR002942 RNA-binding S4 domain CLM_4026 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CLM_4026 IPR020816 Histone-like DNA-binding protein, conserved site CLM_4026 IPR000119 Histone-like DNA-binding protein CLM_4027 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLM_4027 IPR014777 Tetrapyrrole methylase, subdomain 1 CLM_4027 IPR035996 Tetrapyrrole methylase superfamily CLM_4027 IPR035013 YabN, N-terminal CLM_4027 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted CLM_4027 IPR011551 NTP pyrophosphohydrolase MazG CLM_4027 IPR000878 Tetrapyrrole methylase CLM_4028 IPR014249 Sporulation stage V protein B CLM_4028 IPR002797 Polysaccharide biosynthesis protein CLM_4028 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLM_4028 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_4029 IPR039472 Sporulation stage V protein T, GAF domain CLM_4029 IPR007159 SpoVT-AbrB domain CLM_4029 IPR014213 Sporulation stage V, protein T CLM_4029 IPR029016 GAF-like domain superfamily CLM_4029 IPR037914 SpoVT-AbrB domain superfamily CLM_4030 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site CLM_4030 IPR027304 Trigger factor/SurA domain superfamily CLM_4030 IPR023059 Foldase protein PrsA CLM_4030 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CLM_4031 IPR036101 CarD-like/TRCF domain superfamily CLM_4031 IPR003711 CarD-like/TRCF domain CLM_4031 IPR011545 DEAD/DEAH box helicase domain CLM_4031 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_4031 IPR001650 Helicase, C-terminal CLM_4031 IPR004576 Transcription-repair coupling factor CLM_4031 IPR041471 UvrB, interaction domain CLM_4031 IPR037235 TRCF-like, C-terminal domain CLM_4031 IPR005118 Transcription-repair-coupling factor, C-terminal domain CLM_4031 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4032 IPR036416 Peptidyl-tRNA hydrolase superfamily CLM_4032 IPR018171 Peptidyl-tRNA hydrolase, conserved site CLM_4032 IPR001328 Peptidyl-tRNA hydrolase CLM_4033 IPR001478 PDZ domain CLM_4033 IPR036034 PDZ superfamily CLM_4033 IPR009003 Peptidase S1, PA clan CLM_4033 IPR001940 Peptidase S1C CLM_4034 IPR003594 Histidine kinase/HSP90-like ATPase CLM_4034 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLM_4034 IPR000014 PAS domain CLM_4034 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_4034 IPR005467 Histidine kinase domain CLM_4034 IPR031967 PhoR, single Cache-like domain CLM_4034 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLM_4034 IPR035965 PAS domain superfamily CLM_4034 IPR013767 PAS fold CLM_4034 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLM_4035 IPR039420 Transcriptional regulatory protein WalR-like CLM_4035 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4035 IPR011006 CheY-like superfamily CLM_4035 IPR001789 Signal transduction response regulator, receiver domain CLM_4035 IPR001867 OmpR/PhoB-type DNA-binding domain CLM_4036 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type CLM_4036 IPR005946 Ribose-phosphate pyrophosphokinase CLM_4036 IPR029057 Phosphoribosyltransferase-like CLM_4036 IPR000836 Phosphoribosyltransferase domain CLM_4036 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain CLM_4036 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site CLM_4037 IPR011004 Trimeric LpxA-like superfamily CLM_4037 IPR005835 Nucleotidyl transferase domain CLM_4037 IPR001451 Hexapeptide repeat CLM_4037 IPR038009 GlmU, C-terminal LbH domain CLM_4037 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CLM_4037 IPR029044 Nucleotide-diphospho-sugar transferases CLM_4038 IPR007170 Stage V sporulation protein G CLM_4038 IPR036751 Stage V sporulation protein G superfamily CLM_4039 IPR036390 Winged helix DNA-binding domain superfamily CLM_4039 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4039 IPR000836 Phosphoribosyltransferase domain CLM_4039 IPR029057 Phosphoribosyltransferase-like CLM_4039 IPR015265 Bacterial purine repressor, N-terminal CLM_4039 IPR010078 Pur operon repressor CLM_4040 IPR005758 UDP-N-acetylmuramate--L-alanine ligase CLM_4040 IPR000713 Mur ligase, N-terminal catalytic domain CLM_4040 IPR013221 Mur ligase, central CLM_4040 IPR036615 Mur ligase, C-terminal domain superfamily CLM_4040 IPR004101 Mur ligase, C-terminal CLM_4040 IPR036565 Mur-like, catalytic domain superfamily CLM_4044 IPR006439 HAD hydrolase, subfamily IA CLM_4044 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_4044 IPR023214 HAD superfamily CLM_4044 IPR041492 Haloacid dehalogenase-like hydrolase CLM_4044 IPR010976 Beta-phosphoglucomutase hydrolase CLM_4044 IPR036412 HAD-like superfamily CLM_4046 IPR036702 ComB-like superfamily CLM_4046 IPR005238 ComB-like CLM_4047 IPR006638 Elp3/MiaB/NifB CLM_4047 IPR039661 ELP3/YhcC CLM_4047 IPR032432 Radical SAM, C-terminal extension CLM_4047 IPR007197 Radical SAM CLM_4047 IPR005911 Protein YhcC-like CLM_4047 IPR023404 Radical SAM, alpha/beta horseshoe CLM_4049 IPR038728 Uncharacterized membrane protein YkvI CLM_4051 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLM_4051 IPR033479 Double Cache domain 1 CLM_4051 IPR003660 HAMP domain CLM_4051 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_4051 IPR029151 Periplasmic sensor-like domain superfamily CLM_4054 IPR029000 Cyclophilin-like domain superfamily CLM_4054 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain CLM_4054 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase CLM_4054 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site CLM_4055 IPR015942 Asp/Glu/hydantoin racemase CLM_4055 IPR001920 Asp/Glu racemase CLM_4055 IPR018187 Asp/Glu racemase, active site 1 CLM_4055 IPR033134 Asp/Glu racemase, active site 2 CLM_4055 IPR004391 Glutamate racemase CLM_4056 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CLM_4056 IPR036651 Glutamine synthetase, N-terminal domain superfamily CLM_4056 IPR027303 Glutamine synthetase, glycine-rich site CLM_4056 IPR008146 Glutamine synthetase, catalytic domain CLM_4058 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CLM_4058 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CLM_4058 IPR001986 Enolpyruvate transferase domain CLM_4058 IPR036968 Enolpyruvate transferase domain superfamily CLM_4059 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_4059 IPR001279 Metallo-beta-lactamase CLM_4061 IPR036670 SecA, preprotein cross-linking domain superfamily CLM_4061 IPR014018 SecA motor DEAD CLM_4061 IPR011115 SecA DEAD-like, N-terminal CLM_4061 IPR011116 SecA Wing/Scaffold CLM_4061 IPR020937 SecA conserved site CLM_4061 IPR000185 Protein translocase subunit SecA CLM_4061 IPR036266 SecA, Wing/Scaffold superfamily CLM_4061 IPR004027 SEC-C motif CLM_4061 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4061 IPR011130 SecA, preprotein cross-linking domain CLM_4062 IPR029028 Alpha/beta knot methyltransferases CLM_4062 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_4062 IPR003742 RNA methyltransferase RlmH CLM_4065 IPR020846 Major facilitator superfamily domain CLM_4065 IPR011701 Major facilitator superfamily CLM_4065 IPR036259 MFS transporter superfamily CLM_4067 IPR009057 Homeobox-like domain superfamily CLM_4067 IPR001647 DNA-binding HTH domain, TetR-type CLM_4067 IPR011075 Tetracyclin repressor-like, C-terminal domain CLM_4067 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_4068 IPR018062 HTH domain AraC-type, conserved site CLM_4068 IPR020449 Transcription regulator HTH, AraC- type CLM_4068 IPR018060 DNA binding HTH domain, AraC-type CLM_4068 IPR009057 Homeobox-like domain superfamily CLM_4069 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CLM_4069 IPR036005 Creatinase/aminopeptidase-like CLM_4069 IPR000994 Peptidase M24 CLM_4069 IPR001714 Peptidase M24, methionine aminopeptidase CLM_4069 IPR004027 SEC-C motif CLM_4070 IPR000415 Nitroreductase-like CLM_4070 IPR029479 Nitroreductase CLM_4070 IPR012825 5,6-dimethylbenzimidazole synthase BluB CLM_4071 IPR016905 Glycyl radical enzyme, HI0521, predicted CLM_4072 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_4072 IPR013785 Aldolase-type TIM barrel CLM_4072 IPR034457 Organic radical-activating enzymes CLM_4072 IPR012839 Organic radical enzyme activase CLM_4072 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_4072 IPR007197 Radical SAM CLM_4072 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW CLM_4072 IPR001989 Radical-activating enzyme, conserved site CLM_4074 IPR006638 Elp3/MiaB/NifB CLM_4074 IPR013785 Aldolase-type TIM barrel CLM_4074 IPR010722 Biotin and thiamin synthesis-associated domain CLM_4074 IPR007197 Radical SAM CLM_4074 IPR024021 [FeFe]-hydrogenase maturation HydE, radical SAM CLM_4074 IPR034422 HydE/PylB-like CLM_4076 IPR031166 EngA-type guanine nucleotide-binding (G) domain CLM_4076 IPR006073 GTP binding domain CLM_4076 IPR032859 GTPase Der, C-terminal KH-domain-like CLM_4076 IPR015946 K homology domain-like, alpha/beta CLM_4076 IPR005225 Small GTP-binding protein domain CLM_4076 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4076 IPR016484 GTP-binding protein EngA CLM_4078 IPR001296 Glycosyl transferase, family 1 CLM_4078 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLM_4079 IPR016195 Polymerase/histidinol phosphatase-like CLM_4079 IPR004013 PHP domain CLM_4079 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_4082 IPR000847 Transcription regulator HTH, LysR CLM_4082 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4082 IPR005119 LysR, substrate-binding CLM_4082 IPR036390 Winged helix DNA-binding domain superfamily CLM_4083 IPR000209 Peptidase S8/S53 domain CLM_4083 IPR036852 Peptidase S8/S53 domain superfamily CLM_4083 IPR023827 Peptidase S8, subtilisin, Asp-active site CLM_4083 IPR022398 Peptidase S8, subtilisin, His-active site CLM_4083 IPR023828 Peptidase S8, subtilisin, Ser-active site CLM_4083 IPR015500 Peptidase S8, subtilisin-related CLM_4083 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily CLM_4083 IPR041909 Sbi, C3 binding domain IV CLM_4083 IPR034202 Subtilisin Carlsberg-like catalytic domain CLM_4084 IPR005119 LysR, substrate-binding CLM_4084 IPR000847 Transcription regulator HTH, LysR CLM_4084 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4084 IPR036390 Winged helix DNA-binding domain superfamily CLM_4085 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLM_4085 IPR023514 Glyoxylate/hydroxypyruvate reductase A CLM_4085 IPR036291 NAD(P)-binding domain superfamily CLM_4086 IPR001095 Acetyl-CoA carboxylase, alpha subunit CLM_4086 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CLM_4086 IPR029045 ClpP/crotonase-like domain superfamily CLM_4087 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CLM_4087 IPR029045 ClpP/crotonase-like domain superfamily CLM_4087 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit CLM_4087 IPR041010 Acetyl-coA carboxylase zinc finger domain CLM_4087 IPR034733 Acetyl-CoA carboxylase CLM_4088 IPR016185 Pre-ATP-grasp domain superfamily CLM_4088 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLM_4088 IPR005481 Biotin carboxylase-like, N-terminal domain CLM_4088 IPR005482 Biotin carboxylase, C-terminal CLM_4088 IPR011761 ATP-grasp fold CLM_4088 IPR011764 Biotin carboxylation domain CLM_4088 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CLM_4088 IPR011054 Rudiment single hybrid motif CLM_4089 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CLM_4089 IPR029069 HotDog domain superfamily CLM_4089 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CLM_4090 IPR000089 Biotin/lipoyl attachment CLM_4090 IPR011053 Single hybrid motif CLM_4090 IPR001249 Acetyl-CoA biotin carboxyl carrier CLM_4090 IPR001882 Biotin-binding site CLM_4091 IPR016039 Thiolase-like CLM_4091 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 CLM_4091 IPR000794 Beta-ketoacyl synthase CLM_4091 IPR018201 Beta-ketoacyl synthase, active site CLM_4091 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CLM_4091 IPR014030 Beta-ketoacyl synthase, N-terminal CLM_4091 IPR014031 Beta-ketoacyl synthase, C-terminal CLM_4092 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CLM_4092 IPR036291 NAD(P)-binding domain superfamily CLM_4092 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4093 IPR014043 Acyl transferase CLM_4093 IPR001227 Acyl transferase domain superfamily CLM_4093 IPR024925 Malonyl CoA-acyl carrier protein transacylase CLM_4093 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_4093 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CLM_4093 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type CLM_4094 IPR004136 Nitronate monooxygenase CLM_4094 IPR013785 Aldolase-type TIM barrel CLM_4095 IPR036736 ACP-like superfamily CLM_4095 IPR009081 Phosphopantetheine binding ACP domain CLM_4095 IPR003231 Acyl carrier protein (ACP) CLM_4096 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CLM_4096 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_4096 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CLM_4096 IPR016039 Thiolase-like CLM_4099 IPR018392 LysM domain CLM_4099 IPR011055 Duplicated hybrid motif CLM_4099 IPR013731 Opacity-associated protein A, N-terminal CLM_4099 IPR016047 Peptidase M23 CLM_4101 IPR003593 AAA+ ATPase domain CLM_4101 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4101 IPR002611 IstB-like ATP-binding protein CLM_4101 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein CLM_4101 IPR001270 ClpA/B family CLM_4116 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CLM_4116 IPR005177 Bifunctional kinase-pyrophosphorylase CLM_4118 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4118 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like CLM_4118 IPR023166 HI0933-like insert domain superfamily CLM_4121 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4121 IPR001114 Adenylosuccinate synthetase CLM_4121 IPR042111 Adenylosuccinate synthetase, domain 3 CLM_4121 IPR042110 Adenylosuccinate synthetase, domain 2 CLM_4121 IPR042109 Adenylosuccinate synthetase, domain 1 CLM_4121 IPR033128 Adenylosuccinate synthase, active site CLM_4121 IPR018220 Adenylosuccinate synthase, GTP-binding site CLM_4124 IPR005841 Alpha-D-phosphohexomutase superfamily CLM_4124 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CLM_4124 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CLM_4124 IPR016066 Alpha-D-phosphohexomutase, conserved site CLM_4124 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CLM_4124 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CLM_4124 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CLM_4124 IPR005843 Alpha-D-phosphohexomutase, C-terminal CLM_4125 IPR003593 AAA+ ATPase domain CLM_4125 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CLM_4125 IPR007692 DNA helicase, DnaB type CLM_4125 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4125 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CLM_4125 IPR007694 DNA helicase, DnaB-like, C-terminal CLM_4125 IPR007693 DNA helicase, DnaB-like, N-terminal CLM_4126 IPR003593 AAA+ ATPase domain CLM_4126 IPR014251 Sporulation protease LonB CLM_4126 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_4126 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_4126 IPR008268 Peptidase S16, active site CLM_4126 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4126 IPR027065 Lon protease CLM_4126 IPR008269 Peptidase S16, Lon proteolytic domain CLM_4126 IPR003959 ATPase, AAA-type, core CLM_4127 IPR036935 Ribosomal protein L9, N-terminal domain superfamily CLM_4127 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CLM_4127 IPR020069 Ribosomal protein L9, C-terminal CLM_4127 IPR020594 Ribosomal protein L9, bacteria/chloroplast CLM_4127 IPR000244 Ribosomal protein L9 CLM_4127 IPR020070 Ribosomal protein L9, N-terminal CLM_4127 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CLM_4128 IPR001667 DDH domain CLM_4128 IPR038763 DHH phosphoesterase superfamily CLM_4128 IPR003156 DHHA1 domain CLM_4128 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA CLM_4128 IPR000160 GGDEF domain CLM_4131 IPR036870 Ribosomal protein S18 superfamily CLM_4131 IPR001648 Ribosomal protein S18 CLM_4131 IPR018275 Ribosomal protein S18, conserved site CLM_4132 IPR000424 Primosome PriB/single-strand DNA-binding CLM_4132 IPR011344 Single-stranded DNA-binding protein CLM_4132 IPR012340 Nucleic acid-binding, OB-fold CLM_4133 IPR000529 Ribosomal protein S6 CLM_4133 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CLM_4133 IPR035980 Ribosomal protein S6 superfamily CLM_4133 IPR020814 Ribosomal protein S6, plastid/chloroplast CLM_4134 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_4136 IPR010920 LSM domain superfamily CLM_4136 IPR006685 Mechanosensitive ion channel MscS CLM_4136 IPR011066 Mechanosensitive ion channel MscS, C-terminal CLM_4136 IPR023408 Mechanosensitive ion channel MscS domain superfamily CLM_4136 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CLM_4138 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_4138 IPR015424 Pyridoxal phosphate-dependent transferase CLM_4138 IPR016454 Cysteine desulfurase CLM_4138 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLM_4138 IPR000192 Aminotransferase class V domain CLM_4138 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLM_4139 IPR014227 Putative transport protein YtvI-like CLM_4139 IPR002549 Transmembrane protein TqsA-like CLM_4140 IPR009665 Protein of unknown function DUF1256 CLM_4140 IPR023430 Peptidase HybD-like domain superfamily CLM_4143 IPR036086 ParB/Sulfiredoxin superfamily CLM_4143 IPR003115 ParB/Sulfiredoxin CLM_4143 IPR041468 ParB/Spo0J, HTH domain CLM_4143 IPR004437 ParB/RepB/Spo0J partition protein CLM_4144 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4144 IPR025669 AAA domain CLM_4145 IPR003115 ParB/Sulfiredoxin CLM_4145 IPR041468 ParB/Spo0J, HTH domain CLM_4145 IPR023705 Nucleoid occlusion protein CLM_4145 IPR036086 ParB/Sulfiredoxin superfamily CLM_4145 IPR004437 ParB/RepB/Spo0J partition protein CLM_4146 IPR003682 rRNA small subunit methyltransferase G CLM_4146 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_4147 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4147 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG CLM_4147 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CLM_4147 IPR020595 MnmG-related, conserved site CLM_4147 IPR026904 GidA associated domain 3 CLM_4148 IPR018948 GTP-binding protein TrmE, N-terminal CLM_4148 IPR006073 GTP binding domain CLM_4148 IPR004520 tRNA modification GTPase MnmE CLM_4148 IPR027368 tRNA modification GTPase MnmE domain 2 CLM_4148 IPR025867 MnmE, helical domain CLM_4148 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4148 IPR005225 Small GTP-binding protein domain CLM_4148 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CLM_4148 IPR031168 TrmE-type guanine nucleotide-binding domain CLM_4149 IPR034079 Jag, R3H domain CLM_4149 IPR039247 Jag protein CLM_4149 IPR038008 Jag, KH domain CLM_4149 IPR032782 Jag, N-terminal CLM_4149 IPR038247 Jag, N-terminal domain superfamily CLM_4149 IPR004087 K Homology domain CLM_4149 IPR015946 K homology domain-like, alpha/beta CLM_4149 IPR001374 R3H domain CLM_4149 IPR036867 R3H domain superfamily CLM_4150 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CLM_4150 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CLM_4151 IPR002696 Putative membrane protein insertion efficiency factor CLM_4152 IPR000100 Ribonuclease P CLM_4152 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_4152 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_4153 IPR000271 Ribosomal protein L34 CLM_4153 IPR020939 Ribosomal protein L34, conserved site