locus-tag class description CLM_0001 PF11638 DnaA N-terminal domain CLM_0001 PF08299 Bacterial dnaA protein helix-turn-helix CLM_0001 PF00308 Bacterial dnaA protein CLM_0002 PF02767 DNA polymerase III beta subunit, central domain CLM_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain CLM_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain CLM_0004 PF02463 RecF/RecN/SMC N terminal domain CLM_0006 PF01751 Toprim domain CLM_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0006 PF00986 DNA gyrase B subunit, carboxyl terminus CLM_0006 PF00204 DNA gyrase B CLM_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A CLM_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller CLM_0016 PF02829 3H domain CLM_0016 PF08279 HTH domain CLM_0017 PF04015 Domain of unknown function (DUF362) CLM_0018 PF03699 Uncharacterised protein family (UPF0182) CLM_0020 PF01266 FAD dependent oxidoreductase CLM_0022 PF02403 Seryl-tRNA synthetase N-terminal domain CLM_0022 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_0028 PF02666 Phosphatidylserine decarboxylase CLM_0029 PF03109 ABC1 family CLM_0032 PF02954 Bacterial regulatory protein, Fis family CLM_0032 PF13426 PAS domain CLM_0032 PF00158 Sigma-54 interaction domain CLM_0033 PF01053 Cys/Met metabolism PLP-dependent enzyme CLM_0034 PF14437 MafB19-like deaminase CLM_0037 PF12169 DNA polymerase III subunits gamma and tau domain III CLM_0038 PF02575 YbaB/EbfC DNA-binding family CLM_0039 PF13662 Toprim domain CLM_0039 PF02132 RecR protein CLM_0042 PF03749 Sugar fermentation stimulation protein RE domain CLM_0042 PF17746 SfsA N-terminal OB domain CLM_0043 PF09297 NADH pyrophosphatase zinc ribbon domain CLM_0043 PF00293 NUDIX domain CLM_0047 PF00899 ThiF family CLM_0049 PF13302 Acetyltransferase (GNAT) domain CLM_0074 PF04914 DltD protein CLM_0089 PF02146 Sir2 family CLM_0091 PF17676 LD-carboxypeptidase C-terminal domain CLM_0091 PF02016 LD-carboxypeptidase N-terminal domain CLM_0096 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLM_0096 PF01276 Orn/Lys/Arg decarboxylase, major domain CLM_0097 PF02223 Thymidylate kinase CLM_0098 PF06153 Cyclic-di-AMP receptor CLM_0100 PF04468 PSP1 C-terminal conserved region CLM_0102 PF12838 4Fe-4S dicluster domain CLM_0103 PF05175 Methyltransferase small domain CLM_0104 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM_0105 PF00877 NlpC/P60 family CLM_0110 PF02542 YgbB family CLM_0112 PF01522 Polysaccharide deacetylase CLM_0114 PF07670 Nucleoside recognition CLM_0115 PF07670 Nucleoside recognition CLM_0116 PF01554 MatE CLM_0117 PF03167 Uracil DNA glycosylase superfamily CLM_0119 PF01588 Putative tRNA binding domain CLM_0119 PF09334 tRNA synthetases class I (M) CLM_0120 PF04286 Protein of unknown function (DUF445) CLM_0121 PF01026 TatD related DNase CLM_0122 PF07501 G5 domain CLM_0122 PF06725 3D domain CLM_0122 PF03990 G5-linked-Ubiquitin-like domain CLM_0123 PF13331 Domain of unknown function (DUF4093) CLM_0123 PF13662 Toprim domain CLM_0124 PF00398 Ribosomal RNA adenine dimethylase CLM_0129 PF00005 ABC transporter CLM_0130 PF12704 MacB-like periplasmic core domain CLM_0130 PF02687 FtsX-like permease family CLM_0131 PF10609 NUBPL iron-transfer P-loop NTPase CLM_0135 PF00990 Diguanylate cyclase, GGDEF domain CLM_0136 PF02308 MgtC family CLM_0137 PF13597 Anaerobic ribonucleoside-triphosphate reductase CLM_0137 PF03477 ATP cone domain CLM_0138 PF04055 Radical SAM superfamily CLM_0140 PF03551 Transcriptional regulator PadR-like family CLM_0142 PF00133 tRNA synthetases class I (I, L, M and V) CLM_0142 PF08264 Anticodon-binding domain of tRNA CLM_0143 PF00356 Bacterial regulatory proteins, lacI family CLM_0144 PF13086 AAA domain CLM_0144 PF13087 AAA domain CLM_0144 PF13195 Protein of unknown function (DUF4011) CLM_0145 PF01050 Mannose-6-phosphate isomerase CLM_0145 PF00483 Nucleotidyl transferase CLM_0146 PF01969 Protein of unknown function DUF111 CLM_0147 PF02540 NAD synthase CLM_0148 PF00731 AIR carboxylase CLM_0150 PF01547 Bacterial extracellular solute-binding protein CLM_0151 PF00534 Glycosyl transferases group 1 CLM_0151 PF13439 Glycosyltransferase Family 4 CLM_0156 PF13439 Glycosyltransferase Family 4 CLM_0156 PF00534 Glycosyl transferases group 1 CLM_0158 PF05582 YabG peptidase U57 CLM_0159 PF06257 Biofilm formation stimulator VEG CLM_0160 PF01476 LysM domain CLM_0162 PF03575 Peptidase family S51 CLM_0163 PF02875 Mur ligase family, glutamate ligase domain CLM_0163 PF08245 Mur ligase middle domain CLM_0163 PF08443 RimK-like ATP-grasp domain CLM_0164 PF08544 GHMP kinases C terminal CLM_0164 PF00288 GHMP kinases N terminal domain CLM_0166 PF03323 Bacillus/Clostridium GerA spore germination protein CLM_0167 PF03845 Spore germination protein CLM_0169 PF09551 Stage II sporulation protein R (spore_II_R) CLM_0170 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CLM_0170 PF04101 Glycosyltransferase family 28 C-terminal domain CLM_0171 PF03413 Peptidase propeptide and YPEB domain CLM_0171 PF14620 YpeB sporulation CLM_0175 PF00117 Glutamine amidotransferase class-I CLM_0175 PF06418 CTP synthase N-terminus CLM_0177 PF07497 Rho termination factor, RNA-binding domain CLM_0177 PF07498 Rho termination factor, N-terminal domain CLM_0177 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM_0178 PF01197 Ribosomal protein L31 CLM_0179 PF00265 Thymidine kinase CLM_0180 PF07136 Protein of unknown function (DUF1385) CLM_0181 PF17827 PrmC N-terminal domain CLM_0181 PF05175 Methyltransferase small domain CLM_0182 PF03462 PCRF domain CLM_0182 PF00472 RF-1 domain CLM_0185 PF01300 Telomere recombination CLM_0185 PF03481 Putative GTP-binding controlling metal-binding CLM_0186 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLM_0187 PF02502 Ribose/Galactose Isomerase CLM_0191 PF00953 Glycosyl transferase family 4 CLM_0192 PF02350 UDP-N-acetylglucosamine 2-epimerase CLM_0194 PF00119 ATP synthase A chain CLM_0195 PF00137 ATP synthase subunit C CLM_0196 PF00430 ATP synthase B/B' CF(0) CLM_0197 PF00213 ATP synthase delta (OSCP) subunit CLM_0198 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM_0198 PF00306 ATP synthase alpha/beta chain, C terminal domain CLM_0198 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM_0199 PF00231 ATP synthase CLM_0200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM_0200 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM_0201 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLM_0201 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLM_0203 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLM_0204 PF08486 Stage II sporulation protein CLM_0206 PF12116 Stage III sporulation protein D CLM_0208 PF06866 Protein of unknown function (DUF1256) CLM_0209 PF01171 PP-loop family CLM_0216 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLM_0216 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLM_0216 PF02772 S-adenosylmethionine synthetase, central domain CLM_0217 PF13538 UvrD-like helicase C-terminal domain CLM_0217 PF14490 Helix-hairpin-helix containing domain CLM_0217 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CLM_0220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLM_0220 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CLM_0221 PF02810 SEC-C motif CLM_0221 PF07517 SecA DEAD-like domain CLM_0221 PF01043 SecA preprotein cross-linking domain CLM_0221 PF07516 SecA Wing and Scaffold domain CLM_0222 PF00472 RF-1 domain CLM_0222 PF03462 PCRF domain CLM_0224 PF16921 Tex protein YqgF-like domain CLM_0224 PF17674 HHH domain CLM_0224 PF09371 Tex-like protein N-terminal domain CLM_0224 PF00575 S1 RNA binding domain CLM_0226 PF12822 ECF transporter, substrate-specific component CLM_0230 PF01022 Bacterial regulatory protein, arsR family CLM_0231 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_0231 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_0233 PF04607 Region found in RelA / SpoT proteins CLM_0234 PF00133 tRNA synthetases class I (I, L, M and V) CLM_0234 PF08264 Anticodon-binding domain of tRNA CLM_0234 PF09334 tRNA synthetases class I (M) CLM_0234 PF13603 Leucyl-tRNA synthetase, Domain 2 CLM_0235 PF00581 Rhodanese-like domain CLM_0238 PF00684 DnaJ central domain CLM_0238 PF00226 DnaJ domain CLM_0238 PF01556 DnaJ C terminal domain CLM_0242 PF01116 Fructose-bisphosphate aldolase class-II CLM_0244 PF04239 Protein of unknown function (DUF421) CLM_0245 PF03129 Anticodon binding domain CLM_0245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLM_0245 PF02824 TGS domain CLM_0245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_0247 PF01066 CDP-alcohol phosphatidyltransferase CLM_0248 PF00571 CBS domain CLM_0249 PF00781 Diacylglycerol kinase catalytic domain CLM_0251 PF08497 Radical SAM N-terminal CLM_0251 PF04055 Radical SAM superfamily CLM_0251 PF11842 Domain of unknown function (DUF3362) CLM_0254 PF07486 Cell Wall Hydrolase CLM_0254 PF01471 Putative peptidoglycan binding domain CLM_0255 PF00291 Pyridoxal-phosphate dependent enzyme CLM_0256 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_0257 PF08331 Domain of unknown function (DUF1730) CLM_0259 PF10576 Iron-sulfur binding domain of endonuclease III CLM_0259 PF00633 Helix-hairpin-helix motif CLM_0259 PF00730 HhH-GPD superfamily base excision DNA repair protein CLM_0260 PF00390 Malic enzyme, N-terminal domain CLM_0260 PF03949 Malic enzyme, NAD binding domain CLM_0261 PF02464 Competence-damaged protein CLM_0261 PF18146 Damage-inducible protein CinA KH domain CLM_0261 PF00994 Probable molybdopterin binding domain CLM_0262 PF12146 Serine aminopeptidase, S33 CLM_0263 PF05343 M42 glutamyl aminopeptidase CLM_0264 PF04294 VanW like protein CLM_0265 PF04294 VanW like protein CLM_0266 PF04055 Radical SAM superfamily CLM_0267 PF00588 SpoU rRNA Methylase family CLM_0268 PF02645 Uncharacterised protein, DegV family COG1307 CLM_0273 PF01522 Polysaccharide deacetylase CLM_0274 PF04552 Sigma-54, DNA binding domain CLM_0274 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLM_0274 PF04963 Sigma-54 factor, core binding domain CLM_0275 PF04198 Putative sugar-binding domain CLM_0276 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLM_0276 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLM_0277 PF00162 Phosphoglycerate kinase CLM_0278 PF00121 Triosephosphate isomerase CLM_0279 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLM_0279 PF01676 Metalloenzyme superfamily CLM_0280 PF03952 Enolase, N-terminal domain CLM_0280 PF00113 Enolase, C-terminal TIM barrel domain CLM_0282 PF00773 RNB domain CLM_0282 PF00575 S1 RNA binding domain CLM_0282 PF08206 Ribonuclease B OB domain CLM_0282 PF17876 Cold shock domain CLM_0283 PF01975 Survival protein SurE CLM_0284 PF01668 SmpB protein CLM_0287 PF08031 Berberine and berberine like CLM_0287 PF01565 FAD binding domain CLM_0288 PF01209 ubiE/COQ5 methyltransferase family CLM_0291 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLM_0295 PF00072 Response regulator receiver domain CLM_0295 PF00486 Transcriptional regulatory protein, C terminal CLM_0296 PF00005 ABC transporter CLM_0298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0298 PF00512 His Kinase A (phospho-acceptor) domain CLM_0299 PF07883 Cupin domain CLM_0302 PF00324 Amino acid permease CLM_0307 PF01872 RibD C-terminal domain CLM_0308 PF14480 DNA polymerase III polC-type N-terminus I CLM_0308 PF11490 DNA polymerase III polC-type N-terminus II CLM_0308 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLM_0308 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLM_0308 PF14579 Helix-hairpin-helix motif CLM_0308 PF02811 PHP domain CLM_0308 PF00929 Exonuclease CLM_0308 PF01336 OB-fold nucleic acid binding domain CLM_0314 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLM_0315 PF07451 Stage V sporulation protein AD (SpoVAD) CLM_0316 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLM_0317 PF04239 Protein of unknown function (DUF421) CLM_0321 PF02683 Cytochrome C biogenesis protein transmembrane region CLM_0322 PF00578 AhpC/TSA family CLM_0323 PF00486 Transcriptional regulatory protein, C terminal CLM_0323 PF00072 Response regulator receiver domain CLM_0324 PF00512 His Kinase A (phospho-acceptor) domain CLM_0324 PF00672 HAMP domain CLM_0324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0325 PF01565 FAD binding domain CLM_0325 PF08031 Berberine and berberine like CLM_0326 PF02056 Family 4 glycosyl hydrolase CLM_0326 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLM_0327 PF02378 Phosphotransferase system, EIIC CLM_0327 PF00367 phosphotransferase system, EIIB CLM_0328 PF01418 Helix-turn-helix domain, rpiR family CLM_0328 PF01380 SIS domain CLM_0330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_0331 PF00072 Response regulator receiver domain CLM_0331 PF00486 Transcriptional regulatory protein, C terminal CLM_0332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0333 PF00005 ABC transporter CLM_0334 PF02687 FtsX-like permease family CLM_0335 PF00367 phosphotransferase system, EIIB CLM_0335 PF02378 Phosphotransferase system, EIIC CLM_0336 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLM_0336 PF02056 Family 4 glycosyl hydrolase CLM_0337 PF00367 phosphotransferase system, EIIB CLM_0337 PF02378 Phosphotransferase system, EIIC CLM_0337 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_0340 PF00313 'Cold-shock' DNA-binding domain CLM_0342 PF02082 Transcriptional regulator CLM_0343 PF01323 DSBA-like thioredoxin domain CLM_0344 PF13460 NAD(P)H-binding CLM_0345 PF01380 SIS domain CLM_0345 PF01418 Helix-turn-helix domain, rpiR family CLM_0346 PF02378 Phosphotransferase system, EIIC CLM_0346 PF00367 phosphotransferase system, EIIB CLM_0347 PF02056 Family 4 glycosyl hydrolase CLM_0347 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLM_0348 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_0348 PF00367 phosphotransferase system, EIIB CLM_0348 PF02378 Phosphotransferase system, EIIC CLM_0349 PF00920 Dehydratase family CLM_0351 PF00294 pfkB family carbohydrate kinase CLM_0352 PF13382 Adenine deaminase C-terminal domain CLM_0352 PF01979 Amidohydrolase family CLM_0353 PF00072 Response regulator receiver domain CLM_0353 PF00486 Transcriptional regulatory protein, C terminal CLM_0354 PF00672 HAMP domain CLM_0354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0354 PF00512 His Kinase A (phospho-acceptor) domain CLM_0355 PF00535 Glycosyl transferase family 2 CLM_0356 PF04138 GtrA-like protein CLM_0357 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CLM_0358 PF12852 Cupin CLM_0358 PF12833 Helix-turn-helix domain CLM_0362 PF00005 ABC transporter CLM_0365 PF01648 4'-phosphopantetheinyl transferase superfamily CLM_0366 PF00975 Thioesterase domain CLM_0367 PF04397 LytTr DNA-binding domain CLM_0367 PF00072 Response regulator receiver domain CLM_0369 PF00668 Condensation domain CLM_0369 PF00501 AMP-binding enzyme CLM_0369 PF00550 Phosphopantetheine attachment site CLM_0369 PF13193 AMP-binding enzyme C-terminal domain CLM_0370 PF02261 Aspartate decarboxylase CLM_0371 PF00144 Beta-lactamase CLM_0372 PF00664 ABC transporter transmembrane region CLM_0372 PF00005 ABC transporter CLM_0373 PF13193 AMP-binding enzyme C-terminal domain CLM_0373 PF00975 Thioesterase domain CLM_0373 PF00550 Phosphopantetheine attachment site CLM_0373 PF00668 Condensation domain CLM_0373 PF00501 AMP-binding enzyme CLM_0374 PF00668 Condensation domain CLM_0374 PF13193 AMP-binding enzyme C-terminal domain CLM_0374 PF00550 Phosphopantetheine attachment site CLM_0374 PF00975 Thioesterase domain CLM_0374 PF00501 AMP-binding enzyme CLM_0375 PF00550 Phosphopantetheine attachment site CLM_0375 PF00668 Condensation domain CLM_0375 PF00501 AMP-binding enzyme CLM_0375 PF13193 AMP-binding enzyme C-terminal domain CLM_0378 PF01497 Periplasmic binding protein CLM_0379 PF01032 FecCD transport family CLM_0380 PF01032 FecCD transport family CLM_0381 PF00005 ABC transporter CLM_0382 PF00005 ABC transporter CLM_0382 PF00664 ABC transporter transmembrane region CLM_0384 PF00860 Permease family CLM_0385 PF00156 Phosphoribosyl transferase domain CLM_0386 PF00072 Response regulator receiver domain CLM_0386 PF00486 Transcriptional regulatory protein, C terminal CLM_0387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0389 PF00005 ABC transporter CLM_0390 PF02687 FtsX-like permease family CLM_0392 PF03788 LrgA family CLM_0393 PF04172 LrgB-like family CLM_0396 PF08903 Domain of unknown function (DUF1846) CLM_0399 PF04647 Accessory gene regulator B CLM_0401 PF00563 EAL domain CLM_0401 PF01590 GAF domain CLM_0401 PF00360 Phytochrome region CLM_0401 PF00990 Diguanylate cyclase, GGDEF domain CLM_0404 PF00989 PAS fold CLM_0404 PF00672 HAMP domain CLM_0404 PF00512 His Kinase A (phospho-acceptor) domain CLM_0404 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0404 PF18698 Histidine kinase sensor domain CLM_0406 PF04647 Accessory gene regulator B CLM_0408 PF00672 HAMP domain CLM_0408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0408 PF18698 Histidine kinase sensor domain CLM_0408 PF00512 His Kinase A (phospho-acceptor) domain CLM_0408 PF00989 PAS fold CLM_0409 PF01171 PP-loop family CLM_0410 PF09856 Predicted transcriptional regulator (DUF2083) CLM_0410 PF01381 Helix-turn-helix CLM_0410 PF06114 IrrE N-terminal-like domain CLM_0411 PF13520 Amino acid permease CLM_0412 PF00557 Metallopeptidase family M24 CLM_0412 PF01321 Creatinase/Prolidase N-terminal domain CLM_0413 PF00171 Aldehyde dehydrogenase family CLM_0413 PF00465 Iron-containing alcohol dehydrogenase CLM_0418 PF01569 PAP2 superfamily CLM_0419 PF00457 Glycosyl hydrolases family 11 CLM_0419 PF03422 Carbohydrate binding module (family 6) CLM_0419 PF01522 Polysaccharide deacetylase CLM_0420 PF00486 Transcriptional regulatory protein, C terminal CLM_0420 PF00072 Response regulator receiver domain CLM_0421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0421 PF00512 His Kinase A (phospho-acceptor) domain CLM_0421 PF00672 HAMP domain CLM_0423 PF06962 Putative rRNA methylase CLM_0424 PF09335 SNARE associated Golgi protein CLM_0425 PF00563 EAL domain CLM_0425 PF03707 Bacterial signalling protein N terminal repeat CLM_0425 PF00990 Diguanylate cyclase, GGDEF domain CLM_0429 PF03471 Transporter associated domain CLM_0429 PF00999 Sodium/hydrogen exchanger family CLM_0429 PF02080 TrkA-C domain CLM_0430 PF00266 Aminotransferase class-V CLM_0431 PF03601 Conserved hypothetical protein 698 CLM_0433 PF00072 Response regulator receiver domain CLM_0433 PF00486 Transcriptional regulatory protein, C terminal CLM_0434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0434 PF13426 PAS domain CLM_0434 PF00672 HAMP domain CLM_0434 PF00512 His Kinase A (phospho-acceptor) domain CLM_0435 PF00474 Sodium:solute symporter family CLM_0436 PF10531 SLBB domain CLM_0436 PF13237 4Fe-4S dicluster domain CLM_0436 PF13375 RnfC Barrel sandwich hybrid domain CLM_0436 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM_0437 PF03116 NQR2, RnfD, RnfE family CLM_0438 PF04205 FMN-binding domain CLM_0439 PF02508 Rnf-Nqr subunit, membrane protein CLM_0440 PF02508 Rnf-Nqr subunit, membrane protein CLM_0441 PF13187 4Fe-4S dicluster domain CLM_0441 PF04060 Putative Fe-S cluster CLM_0441 PF00037 4Fe-4S binding domain CLM_0445 PF02424 ApbE family CLM_0451 PF08486 Stage II sporulation protein CLM_0451 PF04122 Putative cell wall binding repeat 2 CLM_0454 PF12849 PBP superfamily domain CLM_0455 PF00528 Binding-protein-dependent transport system inner membrane component CLM_0456 PF00528 Binding-protein-dependent transport system inner membrane component CLM_0457 PF00005 ABC transporter CLM_0459 PF13520 Amino acid permease CLM_0463 PF00436 Single-strand binding protein family CLM_0464 PF02659 Putative manganese efflux pump CLM_0466 PF01475 Ferric uptake regulator family CLM_0467 PF01966 HD domain CLM_0467 PF11871 Domain of unknown function (DUF3391) CLM_0468 PF01694 Rhomboid family CLM_0469 PF02743 Cache domain CLM_0469 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0469 PF00672 HAMP domain CLM_0470 PF00004 ATPase family associated with various cellular activities (AAA) CLM_0470 PF17862 AAA+ lid domain CLM_0470 PF06480 FtsH Extracellular CLM_0470 PF01434 Peptidase family M41 CLM_0472 PF00075 RNase H CLM_0480 PF07724 AAA domain (Cdc48 subfamily) CLM_0480 PF00004 ATPase family associated with various cellular activities (AAA) CLM_0480 PF10431 C-terminal, D2-small domain, of ClpB protein CLM_0480 PF02861 Clp amino terminal domain, pathogenicity island component CLM_0480 PF17871 AAA lid domain CLM_0481 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLM_0482 PF08353 Domain of unknown function (DUF1727) CLM_0482 PF08245 Mur ligase middle domain CLM_0483 PF01238 Phosphomannose isomerase type I CLM_0485 PF02673 Bacitracin resistance protein BacA CLM_0494 PF12706 Beta-lactamase superfamily domain CLM_0496 PF00682 HMGL-like CLM_0497 PF00330 Aconitase family (aconitate hydratase) CLM_0498 PF18324 Hypothetical protein TT1725 CLM_0498 PF00180 Isocitrate/isopropylmalate dehydrogenase CLM_0499 PF00005 ABC transporter CLM_0501 PF03553 Na+/H+ antiporter family CLM_0502 PF04070 Domain of unknown function (DUF378) CLM_0503 PF02261 Aspartate decarboxylase CLM_0504 PF02569 Pantoate-beta-alanine ligase CLM_0505 PF02548 Ketopantoate hydroxymethyltransferase CLM_0506 PF12705 PD-(D/E)XK nuclease superfamily CLM_0510 PF00440 Bacterial regulatory proteins, tetR family CLM_0510 PF08361 MAATS-type transcriptional repressor, C-terminal region CLM_0511 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLM_0512 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLM_0512 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLM_0512 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_0513 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CLM_0518 PF12705 PD-(D/E)XK nuclease superfamily CLM_0518 PF13361 UvrD-like helicase C-terminal domain CLM_0518 PF00580 UvrD/REP helicase N-terminal domain CLM_0519 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0519 PF17202 Single cache domain 3 CLM_0519 PF00672 HAMP domain CLM_0520 PF01546 Peptidase family M20/M25/M40 CLM_0520 PF07687 Peptidase dimerisation domain CLM_0521 PF01734 Patatin-like phospholipase CLM_0524 PF00583 Acetyltransferase (GNAT) family CLM_0528 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM_0529 PF01209 ubiE/COQ5 methyltransferase family CLM_0530 PF08668 HDOD domain CLM_0530 PF00563 EAL domain CLM_0531 PF02581 Thiamine monophosphate synthase CLM_0532 PF02110 Hydroxyethylthiazole kinase family CLM_0533 PF02581 Thiamine monophosphate synthase CLM_0533 PF08543 Phosphomethylpyrimidine kinase CLM_0535 PF01820 D-ala D-ala ligase N-terminus CLM_0535 PF07478 D-ala D-ala ligase C-terminus CLM_0536 PF13458 Periplasmic binding protein CLM_0537 PF02653 Branched-chain amino acid transport system / permease component CLM_0538 PF02653 Branched-chain amino acid transport system / permease component CLM_0538 PF11862 Domain of unknown function (DUF3382) CLM_0539 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLM_0539 PF00005 ABC transporter CLM_0540 PF00005 ABC transporter CLM_0544 PF00392 Bacterial regulatory proteins, gntR family CLM_0544 PF00155 Aminotransferase class I and II CLM_0547 PF04536 TPM domain CLM_0548 PF13344 Haloacid dehalogenase-like hydrolase CLM_0548 PF00293 NUDIX domain CLM_0551 PF01209 ubiE/COQ5 methyltransferase family CLM_0552 PF13443 Cro/C1-type HTH DNA-binding domain CLM_0555 PF12320 Type 5 capsule protein repressor C-terminal domain CLM_0555 PF00149 Calcineurin-like phosphoesterase CLM_0556 PF13175 AAA ATPase domain CLM_0558 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLM_0558 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLM_0560 PF01022 Bacterial regulatory protein, arsR family CLM_0561 PF00403 Heavy-metal-associated domain CLM_0563 PF00877 NlpC/P60 family CLM_0569 PF02562 PhoH-like protein CLM_0569 PF13638 PIN domain CLM_0570 PF09992 Phosphodiester glycosidase CLM_0570 PF12708 Pectate lyase superfamily protein CLM_0578 PF00005 ABC transporter CLM_0582 PF02163 Peptidase family M50 CLM_0583 PF07730 Histidine kinase CLM_0583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0584 PF00196 Bacterial regulatory proteins, luxR family CLM_0584 PF00072 Response regulator receiver domain CLM_0585 PF00005 ABC transporter CLM_0589 PF03600 Citrate transporter CLM_0591 PF02390 Putative methyltransferase CLM_0593 PF08534 Redoxin CLM_0596 PF00877 NlpC/P60 family CLM_0597 PF12146 Serine aminopeptidase, S33 CLM_0598 PF00072 Response regulator receiver domain CLM_0598 PF00486 Transcriptional regulatory protein, C terminal CLM_0599 PF01966 HD domain CLM_0599 PF11871 Domain of unknown function (DUF3391) CLM_0600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0600 PF02743 Cache domain CLM_0600 PF00672 HAMP domain CLM_0601 PF00072 Response regulator receiver domain CLM_0602 PF02403 Seryl-tRNA synthetase N-terminal domain CLM_0602 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_0603 PF00270 DEAD/DEAH box helicase CLM_0603 PF13307 Helicase C-terminal domain CLM_0603 PF06733 DEAD_2 CLM_0606 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CLM_0606 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLM_0607 PF06874 Firmicute fructose-1,6-bisphosphatase CLM_0609 PF01814 Hemerythrin HHE cation binding domain CLM_0612 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLM_0612 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLM_0614 PF13186 Iron-sulfur cluster-binding domain CLM_0614 PF04055 Radical SAM superfamily CLM_0619 PF00005 ABC transporter CLM_0619 PF00664 ABC transporter transmembrane region CLM_0620 PF01627 Hpt domain CLM_0620 PF00486 Transcriptional regulatory protein, C terminal CLM_0620 PF00072 Response regulator receiver domain CLM_0621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0621 PF00512 His Kinase A (phospho-acceptor) domain CLM_0622 PF00005 ABC transporter CLM_0625 PF13520 Amino acid permease CLM_0627 PF13404 AsnC-type helix-turn-helix domain CLM_0627 PF01037 Lrp/AsnC ligand binding domain CLM_0629 PF13520 Amino acid permease CLM_0630 PF13520 Amino acid permease CLM_0631 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_0632 PF03772 Competence protein CLM_0632 PF00753 Metallo-beta-lactamase superfamily CLM_0633 PF00690 Cation transporter/ATPase, N-terminus CLM_0633 PF00689 Cation transporting ATPase, C-terminus CLM_0635 PF02417 Chromate transporter CLM_0636 PF02417 Chromate transporter CLM_0637 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLM_0639 PF00795 Carbon-nitrogen hydrolase CLM_0639 PF02540 NAD synthase CLM_0641 PF01145 SPFH domain / Band 7 family CLM_0643 PF05195 Aminopeptidase P, N-terminal domain CLM_0643 PF00557 Metallopeptidase family M24 CLM_0650 PF12146 Serine aminopeptidase, S33 CLM_0652 PF02554 Carbon starvation protein CstA CLM_0652 PF13722 5TM C-terminal transporter carbon starvation CstA CLM_0654 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0654 PF00672 HAMP domain CLM_0654 PF02743 Cache domain CLM_0655 PF00005 ABC transporter CLM_0655 PF16326 ABC transporter C-terminal domain CLM_0655 PF12848 ABC transporter CLM_0656 PF01741 Large-conductance mechanosensitive channel, MscL CLM_0660 PF01043 SecA preprotein cross-linking domain CLM_0660 PF02810 SEC-C motif CLM_0660 PF07517 SecA DEAD-like domain CLM_0660 PF07516 SecA Wing and Scaffold domain CLM_0661 PF00392 Bacterial regulatory proteins, gntR family CLM_0662 PF00005 ABC transporter CLM_0665 PF00005 ABC transporter CLM_0665 PF08402 TOBE domain CLM_0666 PF00528 Binding-protein-dependent transport system inner membrane component CLM_0667 PF00528 Binding-protein-dependent transport system inner membrane component CLM_0670 PF00375 Sodium:dicarboxylate symporter family CLM_0674 PF08924 Domain of unknown function (DUF1906) CLM_0674 PF01471 Putative peptidoglycan binding domain CLM_0675 PF04545 Sigma-70, region 4 CLM_0675 PF12645 Helix-turn-helix domain CLM_0676 PF10960 BhlA holin family CLM_0680 PF00805 Pentapeptide repeats (8 copies) CLM_0683 PF01381 Helix-turn-helix CLM_0685 PF10502 Signal peptidase, peptidase S26 CLM_0686 PF00072 Response regulator receiver domain CLM_0686 PF04397 LytTr DNA-binding domain CLM_0694 PF00664 ABC transporter transmembrane region CLM_0694 PF00005 ABC transporter CLM_0698 PF00005 ABC transporter CLM_0700 PF02645 Uncharacterised protein, DegV family COG1307 CLM_0701 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLM_0703 PF00884 Sulfatase CLM_0704 PF00158 Sigma-54 interaction domain CLM_0704 PF13426 PAS domain CLM_0704 PF02954 Bacterial regulatory protein, Fis family CLM_0705 PF01773 Na+ dependent nucleoside transporter N-terminus CLM_0705 PF07662 Na+ dependent nucleoside transporter C-terminus CLM_0705 PF07670 Nucleoside recognition CLM_0706 PF01336 OB-fold nucleic acid binding domain CLM_0706 PF00152 tRNA synthetases class II (D, K and N) CLM_0709 PF12833 Helix-turn-helix domain CLM_0709 PF06445 GyrI-like small molecule binding domain CLM_0714 PF00072 Response regulator receiver domain CLM_0714 PF00486 Transcriptional regulatory protein, C terminal CLM_0715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0715 PF00512 His Kinase A (phospho-acceptor) domain CLM_0715 PF02702 Osmosensitive K+ channel His kinase sensor domain CLM_0715 PF13493 Domain of unknown function (DUF4118) CLM_0717 PF02557 D-alanyl-D-alanine carboxypeptidase CLM_0718 PF00486 Transcriptional regulatory protein, C terminal CLM_0718 PF00072 Response regulator receiver domain CLM_0719 PF00672 HAMP domain CLM_0719 PF00989 PAS fold CLM_0719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0719 PF00512 His Kinase A (phospho-acceptor) domain CLM_0719 PF18698 Histidine kinase sensor domain CLM_0721 PF08664 YcbB domain CLM_0721 PF00072 Response regulator receiver domain CLM_0722 PF00512 His Kinase A (phospho-acceptor) domain CLM_0722 PF00989 PAS fold CLM_0722 PF18698 Histidine kinase sensor domain CLM_0722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0722 PF00672 HAMP domain CLM_0723 PF01098 Cell cycle protein CLM_0726 PF00005 ABC transporter CLM_0726 PF00664 ABC transporter transmembrane region CLM_0727 PF00302 Chloramphenicol acetyltransferase CLM_0728 PF00440 Bacterial regulatory proteins, tetR family CLM_0728 PF08360 QacR-like protein, C-terminal region CLM_0730 PF01588 Putative tRNA binding domain CLM_0731 PF12833 Helix-turn-helix domain CLM_0731 PF06719 AraC-type transcriptional regulator N-terminus CLM_0732 PF01381 Helix-turn-helix CLM_0734 PF00072 Response regulator receiver domain CLM_0734 PF04397 LytTr DNA-binding domain CLM_0735 PF00005 ABC transporter CLM_0737 PF01546 Peptidase family M20/M25/M40 CLM_0737 PF07687 Peptidase dimerisation domain CLM_0738 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM_0739 PF01713 Smr domain CLM_0739 PF00488 MutS domain V CLM_0743 PF04304 Protein of unknown function (DUF454) CLM_0747 PF00392 Bacterial regulatory proteins, gntR family CLM_0747 PF00155 Aminotransferase class I and II CLM_0749 PF00270 DEAD/DEAH box helicase CLM_0749 PF00271 Helicase conserved C-terminal domain CLM_0754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_0754 PF03466 LysR substrate binding domain CLM_0758 PF02698 DUF218 domain CLM_0761 PF00293 NUDIX domain CLM_0764 PF00962 Adenosine/AMP deaminase CLM_0767 PF00874 PRD domain CLM_0767 PF03123 CAT RNA binding domain CLM_0768 PF02378 Phosphotransferase system, EIIC CLM_0768 PF00367 phosphotransferase system, EIIB CLM_0768 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_0769 PF02811 PHP domain CLM_0771 PF00027 Cyclic nucleotide-binding domain CLM_0771 PF13545 Crp-like helix-turn-helix domain CLM_0772 PF00301 Rubredoxin CLM_0772 PF00753 Metallo-beta-lactamase superfamily CLM_0772 PF00258 Flavodoxin CLM_0773 PF04405 Domain of Unknown function (DUF542) CLM_0773 PF01814 Hemerythrin HHE cation binding domain CLM_0776 PF03616 Sodium/glutamate symporter CLM_0781 PF02653 Branched-chain amino acid transport system / permease component CLM_0782 PF00005 ABC transporter CLM_0789 PF01207 Dihydrouridine synthase (Dus) CLM_0790 PF01272 Transcription elongation factor, GreA/GreB, C-term CLM_0790 PF03449 Transcription elongation factor, N-terminal CLM_0792 PF02384 N-6 DNA Methylase CLM_0792 PF12161 HsdM N-terminal domain CLM_0795 PF08463 EcoEI R protein C-terminal CLM_0795 PF00271 Helicase conserved C-terminal domain CLM_0795 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLM_0795 PF04851 Type III restriction enzyme, res subunit CLM_0797 PF06445 GyrI-like small molecule binding domain CLM_0799 PF03965 Penicillinase repressor CLM_0800 PF05569 BlaR1 peptidase M56 CLM_0800 PF00905 Penicillin binding protein transpeptidase domain CLM_0804 PF01032 FecCD transport family CLM_0805 PF01032 FecCD transport family CLM_0806 PF00005 ABC transporter CLM_0807 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLM_0808 PF00148 Nitrogenase component 1 type Oxidoreductase CLM_0808 PF04324 BFD-like [2Fe-2S] binding domain CLM_0810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0810 PF02743 Cache domain CLM_0810 PF00672 HAMP domain CLM_0815 PF01571 Aminomethyltransferase folate-binding domain CLM_0815 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLM_0816 PF01597 Glycine cleavage H-protein CLM_0817 PF02347 Glycine cleavage system P-protein CLM_0818 PF02347 Glycine cleavage system P-protein CLM_0819 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_0819 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_0820 PF03099 Biotin/lipoate A/B protein ligase family CLM_0820 PF10437 Bacterial lipoate protein ligase C-terminus CLM_0824 PF00872 Transposase, Mutator family CLM_0825 PF00486 Transcriptional regulatory protein, C terminal CLM_0825 PF00072 Response regulator receiver domain CLM_0826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0826 PF00512 His Kinase A (phospho-acceptor) domain CLM_0826 PF00989 PAS fold CLM_0826 PF16736 Single Cache-like CLM_0827 PF12704 MacB-like periplasmic core domain CLM_0827 PF02687 FtsX-like permease family CLM_0827 PF00005 ABC transporter CLM_0829 PF01047 MarR family CLM_0834 PF13411 MerR HTH family regulatory protein CLM_0835 PF00005 ABC transporter CLM_0837 PF00892 EamA-like transporter family CLM_0838 PF01381 Helix-turn-helix CLM_0842 PF12833 Helix-turn-helix domain CLM_0846 PF01381 Helix-turn-helix CLM_0849 PF13411 MerR HTH family regulatory protein CLM_0851 PF17760 UvrA interaction domain CLM_0851 PF00005 ABC transporter CLM_0851 PF17755 UvrA DNA-binding domain CLM_0852 PF13538 UvrD-like helicase C-terminal domain CLM_0854 PF12833 Helix-turn-helix domain CLM_0854 PF06445 GyrI-like small molecule binding domain CLM_0856 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_0856 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM_0857 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0857 PF12729 Four helix bundle sensory module for signal transduction CLM_0857 PF00672 HAMP domain CLM_0860 PF00005 ABC transporter CLM_0860 PF12848 ABC transporter CLM_0866 PF00291 Pyridoxal-phosphate dependent enzyme CLM_0868 PF01053 Cys/Met metabolism PLP-dependent enzyme CLM_0869 PF01209 ubiE/COQ5 methyltransferase family CLM_0871 PF06483 Chitinase C CLM_0871 PF00704 Glycosyl hydrolases family 18 CLM_0872 PF08241 Methyltransferase domain CLM_0874 PF12833 Helix-turn-helix domain CLM_0874 PF06445 GyrI-like small molecule binding domain CLM_0896 PF07953 Clostridium neurotoxin, N-terminal receptor binding CLM_0896 PF08470 Nontoxic nonhaemagglutinin C-terminal CLM_0896 PF01742 Clostridial neurotoxin zinc protease CLM_0897 PF07952 Clostridium neurotoxin, Translocation domain CLM_0897 PF01742 Clostridial neurotoxin zinc protease CLM_0897 PF07953 Clostridium neurotoxin, N-terminal receptor binding CLM_0897 PF07951 Clostridium neurotoxin, C-terminal receptor binding CLM_0899 PF01183 Glycosyl hydrolases family 25 CLM_0899 PF08239 Bacterial SH3 domain CLM_0905 PF01022 Bacterial regulatory protein, arsR family CLM_0906 PF06953 Arsenical resistance operon trans-acting repressor ArsD CLM_0907 PF02374 Anion-transporting ATPase CLM_0909 PF01758 Sodium Bile acid symporter family CLM_0912 PF13847 Methyltransferase domain CLM_0915 PF00005 ABC transporter CLM_0920 PF01547 Bacterial extracellular solute-binding protein CLM_0921 PF08543 Phosphomethylpyrimidine kinase CLM_0921 PF02581 Thiamine monophosphate synthase CLM_0924 PF00005 ABC transporter CLM_0926 PF00072 Response regulator receiver domain CLM_0926 PF00486 Transcriptional regulatory protein, C terminal CLM_0927 PF00005 ABC transporter CLM_0929 PF06445 GyrI-like small molecule binding domain CLM_0929 PF12833 Helix-turn-helix domain CLM_0930 PF13426 PAS domain CLM_0930 PF00512 His Kinase A (phospho-acceptor) domain CLM_0930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0930 PF00672 HAMP domain CLM_0933 PF12704 MacB-like periplasmic core domain CLM_0933 PF02687 FtsX-like permease family CLM_0933 PF00005 ABC transporter CLM_0936 PF00486 Transcriptional regulatory protein, C terminal CLM_0936 PF00072 Response regulator receiver domain CLM_0937 PF00672 HAMP domain CLM_0937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_0937 PF00512 His Kinase A (phospho-acceptor) domain CLM_0939 PF08141 Small acid-soluble spore protein H family CLM_0942 PF05173 Dihydrodipicolinate reductase, C-terminus CLM_0942 PF01113 Dihydrodipicolinate reductase, N-terminus CLM_0943 PF00581 Rhodanese-like domain CLM_0947 PF00144 Beta-lactamase CLM_0948 PF01381 Helix-turn-helix CLM_0949 PF02899 Phage integrase, N-terminal SAM-like domain CLM_0949 PF00589 Phage integrase family CLM_0950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM_0953 PF01979 Amidohydrolase family CLM_0954 PF05525 Branched-chain amino acid transport protein CLM_0955 PF05525 Branched-chain amino acid transport protein CLM_0956 PF02743 Cache domain CLM_0956 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_0956 PF00672 HAMP domain CLM_0958 PF07670 Nucleoside recognition CLM_0958 PF07664 Ferrous iron transport protein B C terminus CLM_0958 PF02421 Ferrous iron transport protein B CLM_0958 PF17910 FeoB cytosolic helical domain CLM_0959 PF02421 Ferrous iron transport protein B CLM_0959 PF07664 Ferrous iron transport protein B C terminus CLM_0959 PF07670 Nucleoside recognition CLM_0959 PF17910 FeoB cytosolic helical domain CLM_0961 PF00300 Histidine phosphatase superfamily (branch 1) CLM_0962 PF04294 VanW like protein CLM_0963 PF02654 Cobalamin-5-phosphate synthase CLM_0969 PF01242 6-pyruvoyl tetrahydropterin synthase CLM_0970 PF00809 Pterin binding enzyme CLM_0972 PF02734 DAK2 domain CLM_0972 PF13684 Dihydroxyacetone kinase family CLM_0973 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLM_0973 PF02152 Dihydroneopterin aldolase CLM_0974 PF00011 Hsp20/alpha crystallin family CLM_0975 PF13411 MerR HTH family regulatory protein CLM_0976 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLM_0977 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLM_0979 PF04542 Sigma-70 region 2 CLM_0979 PF08281 Sigma-70, region 4 CLM_0984 PF00005 ABC transporter CLM_0986 PF01381 Helix-turn-helix CLM_0988 PF08386 TAP-like protein CLM_0988 PF00561 alpha/beta hydrolase fold CLM_0997 PF13673 Acetyltransferase (GNAT) domain CLM_0997 PF04229 GrpB protein CLM_0999 PF17954 Quercetinase C-terminal cupin domain CLM_0999 PF02678 Pirin CLM_1000 PF01638 HxlR-like helix-turn-helix CLM_1001 PF00881 Nitroreductase family CLM_1003 PF00190 Cupin CLM_1004 PF03641 Possible lysine decarboxylase CLM_1006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_1006 PF03466 LysR substrate binding domain CLM_1007 PF00117 Glutamine amidotransferase class-I CLM_1007 PF13302 Acetyltransferase (GNAT) domain CLM_1007 PF00958 GMP synthase C terminal domain CLM_1007 PF03352 Methyladenine glycosylase CLM_1007 PF13673 Acetyltransferase (GNAT) domain CLM_1010 PF01327 Polypeptide deformylase CLM_1011 PF00155 Aminotransferase class I and II CLM_1011 PF00392 Bacterial regulatory proteins, gntR family CLM_1012 PF00881 Nitroreductase family CLM_1013 PF01638 HxlR-like helix-turn-helix CLM_1017 PF12833 Helix-turn-helix domain CLM_1017 PF06445 GyrI-like small molecule binding domain CLM_1020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_1020 PF02378 Phosphotransferase system, EIIC CLM_1020 PF00367 phosphotransferase system, EIIB CLM_1021 PF00232 Glycosyl hydrolase family 1 CLM_1023 PF00953 Glycosyl transferase family 4 CLM_1023 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLM_1026 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_1029 PF12833 Helix-turn-helix domain CLM_1038 PF09557 Domain of unknown function (DUF2382) CLM_1038 PF05239 PRC-barrel domain CLM_1039 PF04229 GrpB protein CLM_1040 PF01476 LysM domain CLM_1040 PF03734 L,D-transpeptidase catalytic domain CLM_1048 PF02687 FtsX-like permease family CLM_1048 PF00005 ABC transporter CLM_1048 PF12704 MacB-like periplasmic core domain CLM_1049 PF00486 Transcriptional regulatory protein, C terminal CLM_1049 PF00072 Response regulator receiver domain CLM_1050 PF00512 His Kinase A (phospho-acceptor) domain CLM_1050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1050 PF00989 PAS fold CLM_1050 PF16736 Single Cache-like CLM_1051 PF01063 Amino-transferase class IV CLM_1052 PF02632 BioY family CLM_1054 PF13302 Acetyltransferase (GNAT) domain CLM_1055 PF00717 Peptidase S24-like CLM_1055 PF01726 LexA DNA binding domain CLM_1058 PF07739 TipAS antibiotic-recognition domain CLM_1058 PF13411 MerR HTH family regulatory protein CLM_1061 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLM_1062 PF03186 CobD/Cbib protein CLM_1063 PF00155 Aminotransferase class I and II CLM_1064 PF01891 Cobalt uptake substrate-specific transmembrane region CLM_1065 PF02553 Cobalt transport protein component CbiN CLM_1067 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM_1067 PF14824 Sirohaem biosynthesis protein central CLM_1067 PF10414 Sirohaem synthase dimerisation region CLM_1068 PF03900 Porphobilinogen deaminase, C-terminal domain CLM_1068 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLM_1071 PF00490 Delta-aminolevulinic acid dehydratase CLM_1072 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLM_1072 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_1073 PF02570 Precorrin-8X methylmutase CLM_1077 PF00753 Metallo-beta-lactamase superfamily CLM_1078 PF00005 ABC transporter CLM_1079 PF00583 Acetyltransferase (GNAT) family CLM_1080 PF02661 Fic/DOC family CLM_1080 PF12728 Helix-turn-helix domain CLM_1081 PF00881 Nitroreductase family CLM_1085 PF13673 Acetyltransferase (GNAT) domain CLM_1085 PF04229 GrpB protein CLM_1086 PF01888 CbiD CLM_1090 PF05175 Methyltransferase small domain CLM_1097 PF14824 Sirohaem biosynthesis protein central CLM_1097 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM_1097 PF10414 Sirohaem synthase dimerisation region CLM_1098 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM_1099 PF11760 Cobalamin synthesis G N-terminal CLM_1099 PF01890 Cobalamin synthesis G C-terminus CLM_1099 PF11761 Cobalamin biosynthesis central region CLM_1100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM_1100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLM_1101 PF02571 Precorrin-6x reductase CbiJ/CobK CLM_1103 PF06180 Cobalt chelatase (CbiK) CLM_1104 PF00288 GHMP kinases N terminal domain CLM_1105 PF12557 Cob(I)alamin adenosyltransferase N terminal CLM_1105 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CLM_1107 PF01226 Formate/nitrite transporter CLM_1108 PF17179 4Fe-4S dicluster domain CLM_1109 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLM_1109 PF00175 Oxidoreductase NAD-binding domain CLM_1110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLM_1110 PF13187 4Fe-4S dicluster domain CLM_1110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLM_1114 PF00005 ABC transporter CLM_1116 PF00072 Response regulator receiver domain CLM_1116 PF00486 Transcriptional regulatory protein, C terminal CLM_1117 PF00512 His Kinase A (phospho-acceptor) domain CLM_1117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1118 PF00005 ABC transporter CLM_1119 PF01032 FecCD transport family CLM_1120 PF01497 Periplasmic binding protein CLM_1123 PF13419 Haloacid dehalogenase-like hydrolase CLM_1126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_1126 PF03466 LysR substrate binding domain CLM_1131 PF02733 Dak1 domain CLM_1132 PF00465 Iron-containing alcohol dehydrogenase CLM_1133 PF07883 Cupin domain CLM_1133 PF12833 Helix-turn-helix domain CLM_1134 PF13673 Acetyltransferase (GNAT) domain CLM_1138 PF00248 Aldo/keto reductase family CLM_1139 PF04993 TfoX N-terminal domain CLM_1144 PF00877 NlpC/P60 family CLM_1145 PF00962 Adenosine/AMP deaminase CLM_1146 PF01061 ABC-2 type transporter CLM_1147 PF01061 ABC-2 type transporter CLM_1150 PF16124 RecQ zinc-binding CLM_1150 PF00570 HRDC domain CLM_1150 PF09382 RQC domain CLM_1150 PF00270 DEAD/DEAH box helicase CLM_1150 PF00271 Helicase conserved C-terminal domain CLM_1151 PF02915 Rubrerythrin CLM_1152 PF12850 Calcineurin-like phosphoesterase superfamily domain CLM_1153 PF00486 Transcriptional regulatory protein, C terminal CLM_1153 PF00072 Response regulator receiver domain CLM_1158 PF01434 Peptidase family M41 CLM_1158 PF00004 ATPase family associated with various cellular activities (AAA) CLM_1158 PF06480 FtsH Extracellular CLM_1158 PF17862 AAA+ lid domain CLM_1160 PF02652 L-lactate permease CLM_1161 PF09861 Lactate racemase N-terminal domain CLM_1162 PF01012 Electron transfer flavoprotein domain CLM_1163 PF01012 Electron transfer flavoprotein domain CLM_1163 PF00766 Electron transfer flavoprotein FAD-binding domain CLM_1164 PF02913 FAD linked oxidases, C-terminal domain CLM_1164 PF01565 FAD binding domain CLM_1169 PF00155 Aminotransferase class I and II CLM_1171 PF01047 MarR family CLM_1172 PF13411 MerR HTH family regulatory protein CLM_1172 PF06445 GyrI-like small molecule binding domain CLM_1174 PF01336 OB-fold nucleic acid binding domain CLM_1174 PF00152 tRNA synthetases class II (D, K and N) CLM_1179 PF13419 Haloacid dehalogenase-like hydrolase CLM_1182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_1182 PF03466 LysR substrate binding domain CLM_1183 PF00583 Acetyltransferase (GNAT) family CLM_1183 PF14268 YoaP-like CLM_1185 PF07670 Nucleoside recognition CLM_1185 PF17910 FeoB cytosolic helical domain CLM_1185 PF07664 Ferrous iron transport protein B C terminus CLM_1185 PF02421 Ferrous iron transport protein B CLM_1185 PF04023 FeoA domain CLM_1186 PF07664 Ferrous iron transport protein B C terminus CLM_1186 PF17910 FeoB cytosolic helical domain CLM_1186 PF02421 Ferrous iron transport protein B CLM_1186 PF07670 Nucleoside recognition CLM_1189 PF02557 D-alanyl-D-alanine carboxypeptidase CLM_1191 PF00072 Response regulator receiver domain CLM_1191 PF00486 Transcriptional regulatory protein, C terminal CLM_1192 PF00989 PAS fold CLM_1192 PF16736 Single Cache-like CLM_1192 PF00512 His Kinase A (phospho-acceptor) domain CLM_1192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1194 PF00067 Cytochrome P450 CLM_1197 PF00486 Transcriptional regulatory protein, C terminal CLM_1197 PF00072 Response regulator receiver domain CLM_1198 PF00672 HAMP domain CLM_1198 PF18698 Histidine kinase sensor domain CLM_1198 PF00989 PAS fold CLM_1198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1198 PF00512 His Kinase A (phospho-acceptor) domain CLM_1200 PF12852 Cupin CLM_1200 PF12833 Helix-turn-helix domain CLM_1201 PF01032 FecCD transport family CLM_1202 PF01032 FecCD transport family CLM_1203 PF00005 ABC transporter CLM_1204 PF01497 Periplasmic binding protein CLM_1205 PF12833 Helix-turn-helix domain CLM_1206 PF00005 ABC transporter CLM_1206 PF00664 ABC transporter transmembrane region CLM_1207 PF00005 ABC transporter CLM_1207 PF00664 ABC transporter transmembrane region CLM_1209 PF00072 Response regulator receiver domain CLM_1209 PF04397 LytTr DNA-binding domain CLM_1214 PF00704 Glycosyl hydrolases family 18 CLM_1214 PF00041 Fibronectin type III domain CLM_1215 PF03190 Protein of unknown function, DUF255 CLM_1216 PF11728 Putative aromatic acid exporter C-terminal domain CLM_1216 PF06081 Aromatic acid exporter family member 1 CLM_1218 PF03551 Transcriptional regulator PadR-like family CLM_1224 PF12848 ABC transporter CLM_1224 PF16326 ABC transporter C-terminal domain CLM_1224 PF00005 ABC transporter CLM_1228 PF01266 FAD dependent oxidoreductase CLM_1229 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1229 PF04324 BFD-like [2Fe-2S] binding domain CLM_1231 PF07690 Major Facilitator Superfamily CLM_1232 PF00750 tRNA synthetases class I (R) CLM_1232 PF03485 Arginyl tRNA synthetase N terminal domain CLM_1232 PF05746 DALR anticodon binding domain CLM_1233 PF00155 Aminotransferase class I and II CLM_1236 PF17910 FeoB cytosolic helical domain CLM_1236 PF02421 Ferrous iron transport protein B CLM_1236 PF07670 Nucleoside recognition CLM_1236 PF07664 Ferrous iron transport protein B C terminus CLM_1240 PF02839 Carbohydrate binding domain CLM_1243 PF09383 NIL domain CLM_1243 PF00005 ABC transporter CLM_1244 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1245 PF03180 NLPA lipoprotein CLM_1246 PF03180 NLPA lipoprotein CLM_1247 PF01546 Peptidase family M20/M25/M40 CLM_1247 PF07687 Peptidase dimerisation domain CLM_1249 PF07729 FCD domain CLM_1249 PF00392 Bacterial regulatory proteins, gntR family CLM_1250 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLM_1250 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLM_1252 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLM_1253 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLM_1253 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLM_1254 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLM_1254 PF00753 Metallo-beta-lactamase superfamily CLM_1254 PF10996 Beta-Casp domain CLM_1256 PF01743 Poly A polymerase head domain CLM_1256 PF12627 Probable RNA and SrmB- binding site of polymerase A CLM_1256 PF01966 HD domain CLM_1257 PF00171 Aldehyde dehydrogenase family CLM_1258 PF01235 Sodium:alanine symporter family CLM_1259 PF01235 Sodium:alanine symporter family CLM_1260 PF01047 MarR family CLM_1261 PF01554 MatE CLM_1264 PF13416 Bacterial extracellular solute-binding protein CLM_1267 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1270 PF13302 Acetyltransferase (GNAT) domain CLM_1273 PF03956 Lysine exporter LysO CLM_1274 PF14602 Hexapeptide repeat of succinyl-transferase CLM_1274 PF12464 Maltose acetyltransferase CLM_1275 PF08279 HTH domain CLM_1275 PF02237 Biotin protein ligase C terminal domain CLM_1275 PF03099 Biotin/lipoate A/B protein ligase family CLM_1278 PF00672 HAMP domain CLM_1278 PF00989 PAS fold CLM_1278 PF18698 Histidine kinase sensor domain CLM_1278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1278 PF00512 His Kinase A (phospho-acceptor) domain CLM_1281 PF01769 Divalent cation transporter CLM_1281 PF03448 MgtE intracellular N domain CLM_1281 PF00571 CBS domain CLM_1282 PF00266 Aminotransferase class-V CLM_1283 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM_1283 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM_1285 PF00301 Rubredoxin CLM_1285 PF00258 Flavodoxin CLM_1285 PF00753 Metallo-beta-lactamase superfamily CLM_1287 PF02028 BCCT, betaine/carnitine/choline family transporter CLM_1290 PF00857 Isochorismatase family CLM_1297 PF00581 Rhodanese-like domain CLM_1299 PF01594 AI-2E family transporter CLM_1306 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1310 PF02401 LytB protein CLM_1310 PF00575 S1 RNA binding domain CLM_1311 PF03061 Thioesterase superfamily CLM_1314 PF02653 Branched-chain amino acid transport system / permease component CLM_1315 PF09383 NIL domain CLM_1315 PF00005 ABC transporter CLM_1317 PF00155 Aminotransferase class I and II CLM_1318 PF00892 EamA-like transporter family CLM_1319 PF00294 pfkB family carbohydrate kinase CLM_1320 PF04227 Indigoidine synthase A like protein CLM_1321 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLM_1321 PF02558 Ketopantoate reductase PanE/ApbA CLM_1322 PF04961 Formiminotransferase-cyclodeaminase CLM_1323 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLM_1323 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLM_1328 PF02535 ZIP Zinc transporter CLM_1329 PF02082 Transcriptional regulator CLM_1330 PF00291 Pyridoxal-phosphate dependent enzyme CLM_1331 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1332 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM_1333 PF00266 Aminotransferase class-V CLM_1334 PF02540 NAD synthase CLM_1338 PF00072 Response regulator receiver domain CLM_1338 PF04397 LytTr DNA-binding domain CLM_1340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1340 PF00989 PAS fold CLM_1340 PF17203 Single cache domain 3 CLM_1340 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLM_1341 PF00005 ABC transporter CLM_1343 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM_1345 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLM_1345 PF10371 Domain of unknown function CLM_1345 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLM_1345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLM_1345 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLM_1348 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CLM_1349 PF01593 Flavin containing amine oxidoreductase CLM_1354 PF00480 ROK family CLM_1355 PF00232 Glycosyl hydrolase family 1 CLM_1356 PF00686 Starch binding domain CLM_1356 PF01373 Glycosyl hydrolase family 14 CLM_1358 PF01479 S4 domain CLM_1358 PF00579 tRNA synthetases class I (W and Y) CLM_1360 PF00005 ABC transporter CLM_1367 PF01476 LysM domain CLM_1367 PF00704 Glycosyl hydrolases family 18 CLM_1368 PF00563 EAL domain CLM_1368 PF00990 Diguanylate cyclase, GGDEF domain CLM_1368 PF03707 Bacterial signalling protein N terminal repeat CLM_1369 PF03315 Serine dehydratase beta chain CLM_1370 PF03313 Serine dehydratase alpha chain CLM_1376 PF01244 Membrane dipeptidase (Peptidase family M19) CLM_1377 PF04893 Yip1 domain CLM_1378 PF00005 ABC transporter CLM_1378 PF02687 FtsX-like permease family CLM_1378 PF12704 MacB-like periplasmic core domain CLM_1380 PF00005 ABC transporter CLM_1381 PF12911 N-terminal TM domain of oligopeptide transport permease C CLM_1381 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1382 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1383 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLM_1386 PF05067 Manganese containing catalase CLM_1387 PF09992 Phosphodiester glycosidase CLM_1387 PF12708 Pectate lyase superfamily protein CLM_1391 PF00692 dUTPase CLM_1392 PF08141 Small acid-soluble spore protein H family CLM_1398 PF00440 Bacterial regulatory proteins, tetR family CLM_1400 PF00005 ABC transporter CLM_1404 PF01235 Sodium:alanine symporter family CLM_1406 PF01381 Helix-turn-helix CLM_1410 PF00462 Glutaredoxin CLM_1411 PF00171 Aldehyde dehydrogenase family CLM_1412 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1415 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLM_1418 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1419 PF00085 Thioredoxin CLM_1420 PF04723 Glycine reductase complex selenoprotein A CLM_1421 PF04723 Glycine reductase complex selenoprotein A CLM_1422 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_1423 PF02504 Fatty acid synthesis protein CLM_1424 PF02245 Methylpurine-DNA glycosylase (MPG) CLM_1426 PF01636 Phosphotransferase enzyme family CLM_1429 PF00596 Class II Aldolase and Adducin N-terminal domain CLM_1430 PF08220 DeoR-like helix-turn-helix domain CLM_1430 PF00455 DeoR C terminal sensor domain CLM_1432 PF01545 Cation efflux family CLM_1432 PF16916 Dimerisation domain of Zinc Transporter CLM_1433 PF04239 Protein of unknown function (DUF421) CLM_1444 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM_1444 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLM_1445 PF03450 CO dehydrogenase flavoprotein C-terminal domain CLM_1445 PF00941 FAD binding domain in molybdopterin dehydrogenase CLM_1446 PF01799 [2Fe-2S] binding domain CLM_1446 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM_1447 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM_1448 PF01751 Toprim domain CLM_1448 PF01131 DNA topoisomerase CLM_1449 PF02659 Putative manganese efflux pump CLM_1452 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLM_1453 PF00753 Metallo-beta-lactamase superfamily CLM_1453 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLM_1453 PF17770 Ribonuclease J C-terminal domain CLM_1454 PF01235 Sodium:alanine symporter family CLM_1456 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) CLM_1461 PF10997 Alternate to MurJ CLM_1462 PF02583 Metal-sensitive transcriptional repressor CLM_1463 PF00403 Heavy-metal-associated domain CLM_1464 PF00403 Heavy-metal-associated domain CLM_1466 PF00005 ABC transporter CLM_1466 PF00664 ABC transporter transmembrane region CLM_1469 PF00486 Transcriptional regulatory protein, C terminal CLM_1469 PF00072 Response regulator receiver domain CLM_1470 PF16736 Single Cache-like CLM_1470 PF00512 His Kinase A (phospho-acceptor) domain CLM_1470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1470 PF00989 PAS fold CLM_1473 PF02645 Uncharacterised protein, DegV family COG1307 CLM_1491 PF06750 Bacterial Peptidase A24 N-terminal domain CLM_1491 PF01478 Type IV leader peptidase family CLM_1493 PF02080 TrkA-C domain CLM_1493 PF02254 TrkA-N domain CLM_1494 PF02386 Cation transport protein CLM_1495 PF13361 UvrD-like helicase C-terminal domain CLM_1495 PF13361 UvrD-like helicase C-terminal domain CLM_1495 PF00580 UvrD/REP helicase N-terminal domain CLM_1495 PF00580 UvrD/REP helicase N-terminal domain CLM_1497 PF00392 Bacterial regulatory proteins, gntR family CLM_1497 PF00155 Aminotransferase class I and II CLM_1498 PF07486 Cell Wall Hydrolase CLM_1498 PF01471 Putative peptidoglycan binding domain CLM_1500 PF02915 Rubrerythrin CLM_1501 PF08486 Stage II sporulation protein CLM_1501 PF04122 Putative cell wall binding repeat 2 CLM_1502 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_1502 PF02378 Phosphotransferase system, EIIC CLM_1502 PF00367 phosphotransferase system, EIIB CLM_1503 PF01255 Putative undecaprenyl diphosphate synthase CLM_1506 PF03063 Prismane/CO dehydrogenase family CLM_1508 PF04324 BFD-like [2Fe-2S] binding domain CLM_1508 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLM_1508 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLM_1508 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1510 PF00005 ABC transporter CLM_1510 PF00664 ABC transporter transmembrane region CLM_1511 PF11756 Nitrous oxide-stimulated promoter CLM_1512 PF13545 Crp-like helix-turn-helix domain CLM_1513 PF07690 Major Facilitator Superfamily CLM_1514 PF01497 Periplasmic binding protein CLM_1515 PF01032 FecCD transport family CLM_1516 PF00005 ABC transporter CLM_1518 PF12838 4Fe-4S dicluster domain CLM_1519 PF01418 Helix-turn-helix domain, rpiR family CLM_1519 PF01380 SIS domain CLM_1520 PF13580 SIS domain CLM_1521 PF02378 Phosphotransferase system, EIIC CLM_1521 PF00367 phosphotransferase system, EIIB CLM_1529 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1529 PF00672 HAMP domain CLM_1529 PF05227 CHASE3 domain CLM_1530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLM_1531 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1532 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1532 PF12911 N-terminal TM domain of oligopeptide transport permease C CLM_1533 PF00005 ABC transporter CLM_1534 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLM_1534 PF00005 ABC transporter CLM_1536 PF00950 ABC 3 transport family CLM_1537 PF00005 ABC transporter CLM_1538 PF01297 Zinc-uptake complex component A periplasmic CLM_1541 PF00990 Diguanylate cyclase, GGDEF domain CLM_1544 PF00005 ABC transporter CLM_1545 PF01475 Ferric uptake regulator family CLM_1546 PF02001 Protein of unknown function DUF134 CLM_1547 PF01476 LysM domain CLM_1547 PF00246 Zinc carboxypeptidase CLM_1549 PF00753 Metallo-beta-lactamase superfamily CLM_1550 PF13520 Amino acid permease CLM_1551 PF08000 Bacterial PH domain CLM_1552 PF07730 Histidine kinase CLM_1553 PF00196 Bacterial regulatory proteins, luxR family CLM_1553 PF00072 Response regulator receiver domain CLM_1554 PF00005 ABC transporter CLM_1561 PF00313 'Cold-shock' DNA-binding domain CLM_1562 PF07687 Peptidase dimerisation domain CLM_1562 PF01546 Peptidase family M20/M25/M40 CLM_1565 PF01625 Peptide methionine sulfoxide reductase CLM_1566 PF00005 ABC transporter CLM_1567 PF02687 FtsX-like permease family CLM_1569 PF00486 Transcriptional regulatory protein, C terminal CLM_1569 PF00072 Response regulator receiver domain CLM_1570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1571 PF00005 ABC transporter CLM_1576 PF00155 Aminotransferase class I and II CLM_1577 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM_1578 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1579 PF00005 ABC transporter CLM_1581 PF07943 Penicillin-binding protein 5, C-terminal domain CLM_1581 PF00768 D-alanyl-D-alanine carboxypeptidase CLM_1582 PF00293 NUDIX domain CLM_1584 PF00465 Iron-containing alcohol dehydrogenase CLM_1586 PF03606 C4-dicarboxylate anaerobic carrier CLM_1587 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLM_1587 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CLM_1587 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CLM_1588 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM_1591 PF00580 UvrD/REP helicase N-terminal domain CLM_1591 PF13361 UvrD-like helicase C-terminal domain CLM_1593 PF02491 SHS2 domain inserted in FTSA CLM_1594 PF07687 Peptidase dimerisation domain CLM_1594 PF01546 Peptidase family M20/M25/M40 CLM_1595 PF08239 Bacterial SH3 domain CLM_1595 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_1596 PF01479 S4 domain CLM_1596 PF00849 RNA pseudouridylate synthase CLM_1597 PF01943 Polysaccharide biosynthesis protein CLM_1597 PF14667 Polysaccharide biosynthesis C-terminal domain CLM_1601 PF00465 Iron-containing alcohol dehydrogenase CLM_1602 PF05362 Lon protease (S16) C-terminal proteolytic domain CLM_1602 PF13654 AAA domain CLM_1605 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLM_1605 PF01447 Thermolysin metallopeptidase, catalytic domain CLM_1605 PF07504 Fungalysin/Thermolysin Propeptide Motif CLM_1605 PF03413 Peptidase propeptide and YPEB domain CLM_1606 PF07504 Fungalysin/Thermolysin Propeptide Motif CLM_1606 PF03413 Peptidase propeptide and YPEB domain CLM_1606 PF01447 Thermolysin metallopeptidase, catalytic domain CLM_1606 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLM_1607 PF07504 Fungalysin/Thermolysin Propeptide Motif CLM_1607 PF03413 Peptidase propeptide and YPEB domain CLM_1607 PF01447 Thermolysin metallopeptidase, catalytic domain CLM_1607 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLM_1608 PF01447 Thermolysin metallopeptidase, catalytic domain CLM_1608 PF03413 Peptidase propeptide and YPEB domain CLM_1608 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLM_1608 PF07504 Fungalysin/Thermolysin Propeptide Motif CLM_1609 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLM_1609 PF03413 Peptidase propeptide and YPEB domain CLM_1609 PF01447 Thermolysin metallopeptidase, catalytic domain CLM_1609 PF07504 Fungalysin/Thermolysin Propeptide Motif CLM_1610 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLM_1610 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLM_1611 PF00890 FAD binding domain CLM_1612 PF02445 Quinolinate synthetase A protein CLM_1614 PF00589 Phage integrase family CLM_1614 PF12167 Arm DNA-binding domain CLM_1616 PF01381 Helix-turn-helix CLM_1619 PF09669 Phage regulatory protein Rha (Phage_pRha) CLM_1619 PF03374 Phage antirepressor protein KilAC domain CLM_1658 PF00574 Clp protease CLM_1675 PF04865 Baseplate J-like protein CLM_1680 PF10960 BhlA holin family CLM_1682 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_1688 PF03006 Haemolysin-III related CLM_1689 PF01926 50S ribosome-binding GTPase CLM_1689 PF06071 Protein of unknown function (DUF933) CLM_1690 PF02381 MraZ protein, putative antitoxin-like CLM_1691 PF01795 MraW methylase family CLM_1693 PF03717 Penicillin-binding Protein dimerisation domain CLM_1693 PF00905 Penicillin binding protein transpeptidase domain CLM_1693 PF03793 PASTA domain CLM_1694 PF08245 Mur ligase middle domain CLM_1694 PF02875 Mur ligase family, glutamate ligase domain CLM_1694 PF01225 Mur ligase family, catalytic domain CLM_1695 PF08245 Mur ligase middle domain CLM_1695 PF01225 Mur ligase family, catalytic domain CLM_1695 PF02875 Mur ligase family, glutamate ligase domain CLM_1696 PF00953 Glycosyl transferase family 4 CLM_1696 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLM_1697 PF01098 Cell cycle protein CLM_1698 PF03799 Cell division protein FtsQ CLM_1698 PF08478 POTRA domain, FtsQ-type CLM_1700 PF06947 Protein of unknown function (DUF1290) CLM_1702 PF01168 Alanine racemase, N-terminal domain CLM_1703 PF04472 Cell division protein SepF CLM_1704 PF02325 YGGT family CLM_1706 PF05103 DivIVA protein CLM_1707 PF01761 3-dehydroquinate synthase CLM_1708 PF01048 Phosphorylase superfamily CLM_1709 PF00793 DAHP synthetase I family CLM_1709 PF01817 Chorismate mutase type II CLM_1710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLM_1711 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLM_1712 PF01252 Signal peptidase (SPase) II CLM_1713 PF00849 RNA pseudouridylate synthase CLM_1713 PF01479 S4 domain CLM_1715 PF00156 Phosphoribosyl transferase domain CLM_1716 PF00860 Permease family CLM_1718 PF03372 Endonuclease/Exonuclease/phosphatase family CLM_1719 PF01170 Putative RNA methylase family UPF0020 CLM_1719 PF02926 THUMP domain CLM_1722 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1723 PF00005 ABC transporter CLM_1725 PF01734 Patatin-like phospholipase CLM_1727 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLM_1728 PF03553 Na+/H+ antiporter family CLM_1730 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLM_1730 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLM_1732 PF02607 B12 binding domain CLM_1732 PF02310 B12 binding domain CLM_1733 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLM_1735 PF09383 NIL domain CLM_1735 PF00005 ABC transporter CLM_1736 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1737 PF03180 NLPA lipoprotein CLM_1739 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1739 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLM_1740 PF03590 Aspartate-ammonia ligase CLM_1741 PF01266 FAD dependent oxidoreductase CLM_1741 PF00355 Rieske [2Fe-2S] domain CLM_1742 PF01131 DNA topoisomerase CLM_1742 PF01751 Toprim domain CLM_1743 PF01624 MutS domain I CLM_1743 PF05190 MutS family domain IV CLM_1743 PF05192 MutS domain III CLM_1743 PF05188 MutS domain II CLM_1743 PF00488 MutS domain V CLM_1744 PF00248 Aldo/keto reductase family CLM_1745 PF04073 Aminoacyl-tRNA editing domain CLM_1746 PF00005 ABC transporter CLM_1748 PF13977 BetI-type transcriptional repressor, C-terminal CLM_1748 PF00440 Bacterial regulatory proteins, tetR family CLM_1750 PF08402 TOBE domain CLM_1750 PF00005 ABC transporter CLM_1751 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1752 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1754 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLM_1754 PF00056 lactate/malate dehydrogenase, NAD binding domain CLM_1755 PF00392 Bacterial regulatory proteins, gntR family CLM_1755 PF07729 FCD domain CLM_1759 PF00072 Response regulator receiver domain CLM_1759 PF01966 HD domain CLM_1761 PF02743 Cache domain CLM_1761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1761 PF00672 HAMP domain CLM_1764 PF01638 HxlR-like helix-turn-helix CLM_1766 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLM_1766 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLM_1767 PF09370 Phosphoenolpyruvate hydrolase-like CLM_1769 PF09370 Phosphoenolpyruvate hydrolase-like CLM_1773 PF01545 Cation efflux family CLM_1773 PF16916 Dimerisation domain of Zinc Transporter CLM_1774 PF00854 POT family CLM_1777 PF08668 HDOD domain CLM_1780 PF00689 Cation transporting ATPase, C-terminus CLM_1780 PF00690 Cation transporter/ATPase, N-terminus CLM_1788 PF00072 Response regulator receiver domain CLM_1788 PF00196 Bacterial regulatory proteins, luxR family CLM_1791 PF13280 WYL domain CLM_1791 PF08279 HTH domain CLM_1794 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_1795 PF01242 6-pyruvoyl tetrahydropterin synthase CLM_1796 PF04055 Radical SAM superfamily CLM_1797 PF01227 GTP cyclohydrolase I CLM_1798 PF06508 Queuosine biosynthesis protein QueC CLM_1799 PF02517 CPBP intramembrane metalloprotease CLM_1800 PF13426 PAS domain CLM_1800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1800 PF08447 PAS fold CLM_1803 PF04198 Putative sugar-binding domain CLM_1804 PF01791 DeoC/LacD family aldolase CLM_1805 PF00294 pfkB family carbohydrate kinase CLM_1806 PF13393 Histidyl-tRNA synthetase CLM_1807 PF01634 ATP phosphoribosyltransferase CLM_1808 PF00815 Histidinol dehydrogenase CLM_1809 PF00475 Imidazoleglycerol-phosphate dehydratase CLM_1810 PF00117 Glutamine amidotransferase class-I CLM_1811 PF00977 Histidine biosynthesis protein CLM_1812 PF00155 Aminotransferase class I and II CLM_1813 PF00977 Histidine biosynthesis protein CLM_1814 PF01502 Phosphoribosyl-AMP cyclohydrolase CLM_1815 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLM_1816 PF04143 Sulphur transport CLM_1818 PF04143 Sulphur transport CLM_1819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_1819 PF03466 LysR substrate binding domain CLM_1821 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_1821 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1822 PF04143 Sulphur transport CLM_1823 PF00005 ABC transporter CLM_1826 PF00486 Transcriptional regulatory protein, C terminal CLM_1826 PF00072 Response regulator receiver domain CLM_1827 PF00512 His Kinase A (phospho-acceptor) domain CLM_1827 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1829 PF13520 Amino acid permease CLM_1830 PF03006 Haemolysin-III related CLM_1838 PF00271 Helicase conserved C-terminal domain CLM_1838 PF00176 SNF2 family N-terminal domain CLM_1838 PF04434 SWIM zinc finger CLM_1841 PF01497 Periplasmic binding protein CLM_1841 PF12833 Helix-turn-helix domain CLM_1842 PF00664 ABC transporter transmembrane region CLM_1842 PF00005 ABC transporter CLM_1843 PF00664 ABC transporter transmembrane region CLM_1843 PF00005 ABC transporter CLM_1844 PF00356 Bacterial regulatory proteins, lacI family CLM_1844 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLM_1845 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLM_1845 PF00480 ROK family CLM_1846 PF00128 Alpha amylase, catalytic domain CLM_1846 PF16657 Maltogenic Amylase, C-terminal domain CLM_1847 PF02378 Phosphotransferase system, EIIC CLM_1847 PF00367 phosphotransferase system, EIIB CLM_1847 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_1850 PF01784 NIF3 (NGG1p interacting factor 3) CLM_1853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_1853 PF00512 His Kinase A (phospho-acceptor) domain CLM_1854 PF00486 Transcriptional regulatory protein, C terminal CLM_1854 PF00072 Response regulator receiver domain CLM_1856 PF04284 Protein of unknown function (DUF441) CLM_1858 PF08220 DeoR-like helix-turn-helix domain CLM_1858 PF00455 DeoR C terminal sensor domain CLM_1861 PF18496 Collagenase G catalytic helper subdomain CLM_1861 PF08453 Peptidase family M9 N-terminal CLM_1861 PF04151 Bacterial pre-peptidase C-terminal domain CLM_1861 PF01752 Collagenase CLM_1863 PF02219 Methylenetetrahydrofolate reductase CLM_1865 PF00809 Pterin binding enzyme CLM_1865 PF02574 Homocysteine S-methyltransferase CLM_1865 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLM_1865 PF02310 B12 binding domain CLM_1865 PF02607 B12 binding domain CLM_1869 PF13426 PAS domain CLM_1869 PF00158 Sigma-54 interaction domain CLM_1869 PF02954 Bacterial regulatory protein, Fis family CLM_1871 PF00676 Dehydrogenase E1 component CLM_1872 PF02779 Transketolase, pyrimidine binding domain CLM_1872 PF02780 Transketolase, C-terminal domain CLM_1873 PF01513 ATP-NAD kinase CLM_1874 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLM_1874 PF00364 Biotin-requiring enzyme CLM_1874 PF02817 e3 binding domain CLM_1875 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM_1876 PF03099 Biotin/lipoate A/B protein ligase family CLM_1876 PF10437 Bacterial lipoate protein ligase C-terminus CLM_1877 PF00005 ABC transporter CLM_1877 PF00571 CBS domain CLM_1878 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1879 PF00291 Pyridoxal-phosphate dependent enzyme CLM_1880 PF00288 GHMP kinases N terminal domain CLM_1880 PF08544 GHMP kinases C terminal CLM_1881 PF00696 Amino acid kinase family CLM_1881 PF13840 ACT domain CLM_1882 PF03447 Homoserine dehydrogenase, NAD binding domain CLM_1882 PF00742 Homoserine dehydrogenase CLM_1882 PF01842 ACT domain CLM_1883 PF00158 Sigma-54 interaction domain CLM_1883 PF13426 PAS domain CLM_1883 PF02954 Bacterial regulatory protein, Fis family CLM_1884 PF00465 Iron-containing alcohol dehydrogenase CLM_1885 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLM_1885 PF00175 Oxidoreductase NAD-binding domain CLM_1886 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_1886 PF13247 4Fe-4S dicluster domain CLM_1886 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLM_1887 PF00158 Sigma-54 interaction domain CLM_1887 PF13426 PAS domain CLM_1887 PF02954 Bacterial regulatory protein, Fis family CLM_1889 PF02368 Bacterial Ig-like domain (group 2) CLM_1897 PF02954 Bacterial regulatory protein, Fis family CLM_1897 PF01590 GAF domain CLM_1897 PF00158 Sigma-54 interaction domain CLM_1900 PF00842 Alanine racemase, C-terminal domain CLM_1900 PF01168 Alanine racemase, N-terminal domain CLM_1901 PF02743 Cache domain CLM_1901 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1901 PF00672 HAMP domain CLM_1902 PF00860 Permease family CLM_1905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1905 PF02743 Cache domain CLM_1905 PF00672 HAMP domain CLM_1908 PF00271 Helicase conserved C-terminal domain CLM_1908 PF00176 SNF2 family N-terminal domain CLM_1908 PF04434 SWIM zinc finger CLM_1909 PF01980 tRNA-methyltransferase O CLM_1912 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLM_1913 PF00528 Binding-protein-dependent transport system inner membrane component CLM_1915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLM_1915 PF00005 ABC transporter CLM_1916 PF13307 Helicase C-terminal domain CLM_1916 PF04851 Type III restriction enzyme, res subunit CLM_1916 PF00929 Exonuclease CLM_1917 PF06207 Protein of unknown function (DUF1002) CLM_1919 PF00011 Hsp20/alpha crystallin family CLM_1920 PF07690 Major Facilitator Superfamily CLM_1921 PF00440 Bacterial regulatory proteins, tetR family CLM_1923 PF00294 pfkB family carbohydrate kinase CLM_1924 PF00854 POT family CLM_1927 PF12671 Putative amidase domain CLM_1929 PF00294 pfkB family carbohydrate kinase CLM_1930 PF00188 Cysteine-rich secretory protein family CLM_1932 PF02743 Cache domain CLM_1932 PF00672 HAMP domain CLM_1932 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1933 PF00005 ABC transporter CLM_1933 PF12848 ABC transporter CLM_1934 PF13187 4Fe-4S dicluster domain CLM_1934 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLM_1934 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLM_1935 PF00072 Response regulator receiver domain CLM_1935 PF01584 CheW-like domain CLM_1936 PF00270 DEAD/DEAH box helicase CLM_1936 PF00271 Helicase conserved C-terminal domain CLM_1937 PF13509 S1 domain CLM_1937 PF17783 CvfB-like winged helix domain CLM_1938 PF03880 DbpA RNA binding domain CLM_1938 PF00270 DEAD/DEAH box helicase CLM_1938 PF00271 Helicase conserved C-terminal domain CLM_1941 PF13457 GW (Gly-Tryp) dipeptide domain CLM_1941 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLM_1942 PF00210 Ferritin-like domain CLM_1943 PF00072 Response regulator receiver domain CLM_1946 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLM_1947 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLM_1950 PF00589 Phage integrase family CLM_1950 PF02899 Phage integrase, N-terminal SAM-like domain CLM_1952 PF00717 Peptidase S24-like CLM_1952 PF01726 LexA DNA binding domain CLM_1953 PF06838 Methionine gamma-lyase CLM_1954 PF17209 Hfq protein CLM_1956 PF01119 DNA mismatch repair protein, C-terminal domain CLM_1956 PF08676 MutL C terminal dimerisation domain CLM_1957 PF01624 MutS domain I CLM_1957 PF05192 MutS domain III CLM_1957 PF05190 MutS family domain IV CLM_1957 PF05188 MutS domain II CLM_1957 PF00488 MutS domain V CLM_1958 PF04055 Radical SAM superfamily CLM_1958 PF01938 TRAM domain CLM_1958 PF00919 Uncharacterized protein family UPF0004 CLM_1959 PF00155 Aminotransferase class I and II CLM_1961 PF00155 Aminotransferase class I and II CLM_1964 PF00575 S1 RNA binding domain CLM_1964 PF02401 LytB protein CLM_1965 PF02224 Cytidylate kinase CLM_1968 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLM_1968 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLM_1969 PF01418 Helix-turn-helix domain, rpiR family CLM_1969 PF01380 SIS domain CLM_1970 PF01479 S4 domain CLM_1970 PF00849 RNA pseudouridylate synthase CLM_1972 PF03313 Serine dehydratase alpha chain CLM_1975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_1975 PF00672 HAMP domain CLM_1975 PF02743 Cache domain CLM_1976 PF11412 Disulphide bond corrector protein DsbC CLM_1976 PF02683 Cytochrome C biogenesis protein transmembrane region CLM_1978 PF00795 Carbon-nitrogen hydrolase CLM_1980 PF00999 Sodium/hydrogen exchanger family CLM_1980 PF02080 TrkA-C domain CLM_1980 PF02254 TrkA-N domain CLM_1981 PF02627 Carboxymuconolactone decarboxylase family CLM_1984 PF01906 Putative heavy-metal-binding CLM_1990 PF00586 AIR synthase related protein, N-terminal domain CLM_1990 PF02769 AIR synthase related protein, C-terminal domain CLM_1991 PF01924 Hydrogenase formation hypA family CLM_1992 PF01455 HupF/HypC family CLM_1993 PF17788 HypF Kae1-like domain CLM_1993 PF00708 Acylphosphatase CLM_1993 PF01300 Telomere recombination CLM_1993 PF07503 HypF finger CLM_1997 PF00374 Nickel-dependent hydrogenase CLM_1998 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CLM_1998 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLM_2001 PF02142 MGS-like domain CLM_2001 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLM_2001 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM_2002 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLM_2002 PF00117 Glutamine amidotransferase class-I CLM_2006 PF12848 ABC transporter CLM_2006 PF00005 ABC transporter CLM_2007 PF00037 4Fe-4S binding domain CLM_2007 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLM_2007 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLM_2007 PF02256 Iron hydrogenase small subunit CLM_2008 PF00037 4Fe-4S binding domain CLM_2008 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM_2008 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLM_2010 PF00999 Sodium/hydrogen exchanger family CLM_2010 PF00582 Universal stress protein family CLM_2012 PF01594 AI-2E family transporter CLM_2013 PF07943 Penicillin-binding protein 5, C-terminal domain CLM_2013 PF00768 D-alanyl-D-alanine carboxypeptidase CLM_2015 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CLM_2016 PF04079 Segregation and condensation complex subunit ScpB CLM_2017 PF02616 Segregation and condensation protein ScpA CLM_2020 PF00768 D-alanyl-D-alanine carboxypeptidase CLM_2020 PF07943 Penicillin-binding protein 5, C-terminal domain CLM_2021 PF12787 EcsC protein family CLM_2024 PF00591 Glycosyl transferase family, a/b domain CLM_2024 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CLM_2024 PF02885 Glycosyl transferase family, helical bundle domain CLM_2025 PF01048 Phosphorylase superfamily CLM_2026 PF02899 Phage integrase, N-terminal SAM-like domain CLM_2026 PF00589 Phage integrase family CLM_2030 PF00293 NUDIX domain CLM_2031 PF13520 Amino acid permease CLM_2032 PF00877 NlpC/P60 family CLM_2036 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_2038 PF10960 BhlA holin family CLM_2087 PF02899 Phage integrase, N-terminal SAM-like domain CLM_2087 PF00589 Phage integrase family CLM_2088 PF00072 Response regulator receiver domain CLM_2088 PF08769 Sporulation initiation factor Spo0A C terminal CLM_2089 PF05580 SpoIVB peptidase S55 CLM_2089 PF17820 PDZ domain CLM_2090 PF04204 Homoserine O-succinyltransferase CLM_2091 PF00742 Homoserine dehydrogenase CLM_2091 PF03447 Homoserine dehydrogenase, NAD binding domain CLM_2091 PF01842 ACT domain CLM_2092 PF01053 Cys/Met metabolism PLP-dependent enzyme CLM_2094 PF02463 RecF/RecN/SMC N terminal domain CLM_2095 PF02863 Arginine repressor, C-terminal domain CLM_2095 PF01316 Arginine repressor, DNA binding domain CLM_2096 PF01513 ATP-NAD kinase CLM_2097 PF01479 S4 domain CLM_2097 PF01728 FtsJ-like methyltransferase CLM_2098 PF02780 Transketolase, C-terminal domain CLM_2098 PF02779 Transketolase, pyrimidine binding domain CLM_2098 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLM_2100 PF00348 Polyprenyl synthetase CLM_2101 PF02609 Exonuclease VII small subunit CLM_2102 PF13742 OB-fold nucleic acid binding domain CLM_2102 PF02601 Exonuclease VII, large subunit CLM_2103 PF01029 NusB family CLM_2104 PF03780 Asp23 family, cell envelope-related function CLM_2108 PF09546 Stage III sporulation protein AE (spore_III_AE) CLM_2109 PF06686 Stage III sporulation protein AC/AD protein family CLM_2110 PF06686 Stage III sporulation protein AC/AD protein family CLM_2114 PF08207 Elongation factor P (EF-P) KOW-like domain CLM_2114 PF09285 Elongation factor P, C-terminal CLM_2114 PF01132 Elongation factor P (EF-P) OB domain CLM_2115 PF01220 Dehydroquinase class II CLM_2116 PF01202 Shikimate kinase CLM_2124 PF08334 Type II secretion system (T2SS), protein G CLM_2124 PF07963 Prokaryotic N-terminal methylation motif CLM_2125 PF00482 Type II secretion system (T2SS), protein F CLM_2126 PF00437 Type II/IV secretion system protein CLM_2129 PF01678 Diaminopimelate epimerase CLM_2131 PF01416 tRNA pseudouridine synthase CLM_2133 PF01230 HIT domain CLM_2134 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLM_2136 PF12729 Four helix bundle sensory module for signal transduction CLM_2136 PF00672 HAMP domain CLM_2136 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2137 PF03415 Clostripain family CLM_2139 PF00072 Response regulator receiver domain CLM_2139 PF00486 Transcriptional regulatory protein, C terminal CLM_2140 PF00512 His Kinase A (phospho-acceptor) domain CLM_2140 PF13426 PAS domain CLM_2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2140 PF00672 HAMP domain CLM_2141 PF01625 Peptide methionine sulfoxide reductase CLM_2142 PF00672 HAMP domain CLM_2142 PF00989 PAS fold CLM_2142 PF18698 Histidine kinase sensor domain CLM_2142 PF00512 His Kinase A (phospho-acceptor) domain CLM_2142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2143 PF00072 Response regulator receiver domain CLM_2143 PF00486 Transcriptional regulatory protein, C terminal CLM_2146 PF00005 ABC transporter CLM_2148 PF00664 ABC transporter transmembrane region CLM_2148 PF00005 ABC transporter CLM_2149 PF00664 ABC transporter transmembrane region CLM_2149 PF00005 ABC transporter CLM_2153 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLM_2153 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CLM_2154 PF02954 Bacterial regulatory protein, Fis family CLM_2154 PF00158 Sigma-54 interaction domain CLM_2154 PF13426 PAS domain CLM_2156 PF01967 MoaC family CLM_2157 PF06463 Molybdenum Cofactor Synthesis C CLM_2157 PF04055 Radical SAM superfamily CLM_2158 PF03453 MoeA N-terminal region (domain I and II) CLM_2158 PF03454 MoeA C-terminal region (domain IV) CLM_2158 PF00994 Probable molybdopterin binding domain CLM_2159 PF00994 Probable molybdopterin binding domain CLM_2159 PF03454 MoeA C-terminal region (domain IV) CLM_2159 PF03453 MoeA N-terminal region (domain I and II) CLM_2160 PF00994 Probable molybdopterin binding domain CLM_2161 PF00005 ABC transporter CLM_2162 PF00528 Binding-protein-dependent transport system inner membrane component CLM_2163 PF12849 PBP superfamily domain CLM_2164 PF01554 MatE CLM_2167 PF00005 ABC transporter CLM_2168 PF02687 FtsX-like permease family CLM_2168 PF12704 MacB-like periplasmic core domain CLM_2170 PF00664 ABC transporter transmembrane region CLM_2170 PF00005 ABC transporter CLM_2171 PF00664 ABC transporter transmembrane region CLM_2171 PF00005 ABC transporter CLM_2172 PF13411 MerR HTH family regulatory protein CLM_2172 PF06445 GyrI-like small molecule binding domain CLM_2176 PF00704 Glycosyl hydrolases family 18 CLM_2176 PF00041 Fibronectin type III domain CLM_2177 PF00158 Sigma-54 interaction domain CLM_2177 PF13426 PAS domain CLM_2177 PF02954 Bacterial regulatory protein, Fis family CLM_2179 PF01042 Endoribonuclease L-PSP CLM_2180 PF00375 Sodium:dicarboxylate symporter family CLM_2181 PF00155 Aminotransferase class I and II CLM_2182 PF03313 Serine dehydratase alpha chain CLM_2185 PF00512 His Kinase A (phospho-acceptor) domain CLM_2185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2185 PF00672 HAMP domain CLM_2186 PF00072 Response regulator receiver domain CLM_2186 PF00486 Transcriptional regulatory protein, C terminal CLM_2188 PF02361 Cobalt transport protein CLM_2189 PF00005 ABC transporter CLM_2191 PF01168 Alanine racemase, N-terminal domain CLM_2192 PF03845 Spore germination protein CLM_2193 PF03323 Bacillus/Clostridium GerA spore germination protein CLM_2194 PF03845 Spore germination protein CLM_2198 PF02627 Carboxymuconolactone decarboxylase family CLM_2201 PF02080 TrkA-C domain CLM_2201 PF03471 Transporter associated domain CLM_2201 PF00999 Sodium/hydrogen exchanger family CLM_2202 PF00183 Hsp90 protein CLM_2203 PF05190 MutS family domain IV CLM_2203 PF05188 MutS domain II CLM_2203 PF01624 MutS domain I CLM_2203 PF00488 MutS domain V CLM_2203 PF05192 MutS domain III CLM_2204 PF02378 Phosphotransferase system, EIIC CLM_2204 PF00367 phosphotransferase system, EIIB CLM_2205 PF00128 Alpha amylase, catalytic domain CLM_2205 PF16657 Maltogenic Amylase, C-terminal domain CLM_2206 PF07702 UTRA domain CLM_2206 PF00392 Bacterial regulatory proteins, gntR family CLM_2207 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLM_2207 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLM_2208 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLM_2208 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLM_2209 PF00294 pfkB family carbohydrate kinase CLM_2210 PF01116 Fructose-bisphosphate aldolase class-II CLM_2212 PF11208 Protein of unknown function (DUF2992) CLM_2215 PF00465 Iron-containing alcohol dehydrogenase CLM_2217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2217 PF00672 HAMP domain CLM_2217 PF02743 Cache domain CLM_2219 PF01168 Alanine racemase, N-terminal domain CLM_2221 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLM_2221 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLM_2222 PF00156 Phosphoribosyl transferase domain CLM_2225 PF00990 Diguanylate cyclase, GGDEF domain CLM_2226 PF03313 Serine dehydratase alpha chain CLM_2228 PF00271 Helicase conserved C-terminal domain CLM_2228 PF00270 DEAD/DEAH box helicase CLM_2229 PF00188 Cysteine-rich secretory protein family CLM_2230 PF00392 Bacterial regulatory proteins, gntR family CLM_2230 PF00155 Aminotransferase class I and II CLM_2231 PF00892 EamA-like transporter family CLM_2232 PF00155 Aminotransferase class I and II CLM_2233 PF00005 ABC transporter CLM_2235 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM_2236 PF09861 Lactate racemase N-terminal domain CLM_2237 PF00266 Aminotransferase class-V CLM_2238 PF00302 Chloramphenicol acetyltransferase CLM_2243 PF00854 POT family CLM_2244 PF00854 POT family CLM_2245 PF00557 Metallopeptidase family M24 CLM_2245 PF01321 Creatinase/Prolidase N-terminal domain CLM_2246 PF00561 alpha/beta hydrolase fold CLM_2248 PF00209 Sodium:neurotransmitter symporter family CLM_2249 PF00155 Aminotransferase class I and II CLM_2249 PF00392 Bacterial regulatory proteins, gntR family CLM_2250 PF02567 Phenazine biosynthesis-like protein CLM_2254 PF00092 von Willebrand factor type A domain CLM_2257 PF06100 MCRA family CLM_2262 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2262 PF00672 HAMP domain CLM_2262 PF12729 Four helix bundle sensory module for signal transduction CLM_2268 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_2268 PF06426 Serine acetyltransferase, N-terminal CLM_2269 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLM_2271 PF00483 Nucleotidyl transferase CLM_2272 PF16363 GDP-mannose 4,6 dehydratase CLM_2279 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CLM_2289 PF05036 Sporulation related domain CLM_2289 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_2290 PF05105 Bacteriophage holin family CLM_2293 PF02229 Transcriptional Coactivator p15 (PC4) CLM_2296 PF02384 N-6 DNA Methylase CLM_2298 PF00271 Helicase conserved C-terminal domain CLM_2304 PF16363 GDP-mannose 4,6 dehydratase CLM_2305 PF00535 Glycosyl transferase family 2 CLM_2306 PF00535 Glycosyl transferase family 2 CLM_2310 PF00009 Elongation factor Tu GTP binding domain CLM_2310 PF14492 Elongation Factor G, domain II CLM_2310 PF03764 Elongation factor G, domain IV CLM_2310 PF00679 Elongation factor G C-terminus CLM_2312 PF00403 Heavy-metal-associated domain CLM_2313 PF02583 Metal-sensitive transcriptional repressor CLM_2314 PF00936 BMC domain CLM_2315 PF06130 Phosphate propanoyltransferase CLM_2316 PF00465 Iron-containing alcohol dehydrogenase CLM_2316 PF00171 Aldehyde dehydrogenase family CLM_2317 PF00936 BMC domain CLM_2318 PF06249 Ethanolamine utilisation protein EutQ CLM_2323 PF10662 Ethanolamine utilisation - propanediol utilisation CLM_2324 PF00936 BMC domain CLM_2325 PF13187 4Fe-4S dicluster domain CLM_2325 PF04055 Radical SAM superfamily CLM_2326 PF01228 Glycine radical CLM_2326 PF02901 Pyruvate formate lyase-like CLM_2327 PF00465 Iron-containing alcohol dehydrogenase CLM_2327 PF00171 Aldehyde dehydrogenase family CLM_2328 PF00936 BMC domain CLM_2329 PF00936 BMC domain CLM_2332 PF07739 TipAS antibiotic-recognition domain CLM_2332 PF13411 MerR HTH family regulatory protein CLM_2333 PF00465 Iron-containing alcohol dehydrogenase CLM_2335 PF07690 Major Facilitator Superfamily CLM_2336 PF07729 FCD domain CLM_2336 PF00392 Bacterial regulatory proteins, gntR family CLM_2341 PF09234 Domain of unknown function (DUF1963) CLM_2344 PF04203 Sortase domain CLM_2346 PF00512 His Kinase A (phospho-acceptor) domain CLM_2346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2347 PF00072 Response regulator receiver domain CLM_2347 PF00486 Transcriptional regulatory protein, C terminal CLM_2350 PF00005 ABC transporter CLM_2351 PF02687 FtsX-like permease family CLM_2352 PF01494 FAD binding domain CLM_2353 PF13443 Cro/C1-type HTH DNA-binding domain CLM_2355 PF00107 Zinc-binding dehydrogenase CLM_2355 PF08240 Alcohol dehydrogenase GroES-like domain CLM_2357 PF01761 3-dehydroquinate synthase CLM_2358 PF02687 FtsX-like permease family CLM_2359 PF00005 ABC transporter CLM_2361 PF08279 HTH domain CLM_2361 PF00874 PRD domain CLM_2361 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLM_2361 PF05043 Mga helix-turn-helix domain CLM_2362 PF03611 PTS system sugar-specific permease component CLM_2363 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLM_2364 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLM_2365 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLM_2369 PF14602 Hexapeptide repeat of succinyl-transferase CLM_2369 PF12464 Maltose acetyltransferase CLM_2372 PF00854 POT family CLM_2373 PF13649 Methyltransferase domain CLM_2374 PF12833 Helix-turn-helix domain CLM_2374 PF06445 GyrI-like small molecule binding domain CLM_2376 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_2376 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLM_2382 PF02567 Phenazine biosynthesis-like protein CLM_2383 PF00392 Bacterial regulatory proteins, gntR family CLM_2383 PF00155 Aminotransferase class I and II CLM_2385 PF01381 Helix-turn-helix CLM_2386 PF07859 alpha/beta hydrolase fold CLM_2387 PF01979 Amidohydrolase family CLM_2388 PF00860 Permease family CLM_2391 PF13520 Amino acid permease CLM_2393 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_2395 PF13237 4Fe-4S dicluster domain CLM_2395 PF00766 Electron transfer flavoprotein FAD-binding domain CLM_2395 PF01012 Electron transfer flavoprotein domain CLM_2396 PF01012 Electron transfer flavoprotein domain CLM_2397 PF02770 Acyl-CoA dehydrogenase, middle domain CLM_2397 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM_2397 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM_2398 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_2399 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_2400 PF02515 CoA-transferase family III CLM_2403 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_2404 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2407 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM_2408 PF02447 GntP family permease CLM_2409 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLM_2410 PF07005 Sugar-binding N-terminal domain CLM_2410 PF17042 Nucleotide-binding C-terminal domain CLM_2411 PF08220 DeoR-like helix-turn-helix domain CLM_2411 PF00455 DeoR C terminal sensor domain CLM_2415 PF00440 Bacterial regulatory proteins, tetR family CLM_2415 PF08361 MAATS-type transcriptional repressor, C-terminal region CLM_2420 PF00107 Zinc-binding dehydrogenase CLM_2420 PF08240 Alcohol dehydrogenase GroES-like domain CLM_2421 PF03063 Prismane/CO dehydrogenase family CLM_2424 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CLM_2425 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLM_2428 PF10609 NUBPL iron-transfer P-loop NTPase CLM_2431 PF00691 OmpA family CLM_2431 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLM_2432 PF01618 MotA/TolQ/ExbB proton channel family CLM_2434 PF04122 Putative cell wall binding repeat 2 CLM_2434 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_2437 PF03169 OPT oligopeptide transporter protein CLM_2438 PF01546 Peptidase family M20/M25/M40 CLM_2438 PF07687 Peptidase dimerisation domain CLM_2439 PF01212 Beta-eliminating lyase CLM_2440 PF02595 Glycerate kinase family CLM_2443 PF00106 short chain dehydrogenase CLM_2444 PF12679 ABC-2 family transporter protein CLM_2445 PF00005 ABC transporter CLM_2446 PF13673 Acetyltransferase (GNAT) domain CLM_2447 PF01047 MarR family CLM_2449 PF10990 Protein of unknown function (DUF2809) CLM_2451 PF04324 BFD-like [2Fe-2S] binding domain CLM_2451 PF01266 FAD dependent oxidoreductase CLM_2452 PF09278 MerR, DNA binding CLM_2452 PF00376 MerR family regulatory protein CLM_2453 PF13520 Amino acid permease CLM_2454 PF01661 Macro domain CLM_2457 PF01047 MarR family CLM_2460 PF02110 Hydroxyethylthiazole kinase family CLM_2465 PF00753 Metallo-beta-lactamase superfamily CLM_2468 PF04055 Radical SAM superfamily CLM_2468 PF06968 Biotin and Thiamin Synthesis associated domain CLM_2469 PF02632 BioY family CLM_2472 PF01321 Creatinase/Prolidase N-terminal domain CLM_2472 PF00557 Metallopeptidase family M24 CLM_2473 PF00854 POT family CLM_2498 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_2514 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC CLM_2529 PF17288 Terminase RNAseH like domain CLM_2529 PF04466 Phage terminase large subunit CLM_2530 PF10668 Phage terminase small subunit CLM_2533 PF02368 Bacterial Ig-like domain (group 2) CLM_2538 PF02086 D12 class N6 adenine-specific DNA methyltransferase CLM_2540 PF02899 Phage integrase, N-terminal SAM-like domain CLM_2540 PF00589 Phage integrase family CLM_2558 PF18277 AbrB C-terminal domain CLM_2558 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLM_2562 PF01695 IstB-like ATP binding protein CLM_2573 PF10548 P22AR C-terminal domain CLM_2573 PF08346 AntA/AntB antirepressor CLM_2576 PF06114 IrrE N-terminal-like domain CLM_2578 PF00239 Resolvase, N terminal domain CLM_2578 PF02796 Helix-turn-helix domain of resolvase CLM_2583 PF01641 SelR domain CLM_2584 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLM_2584 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLM_2585 PF00664 ABC transporter transmembrane region CLM_2585 PF00005 ABC transporter CLM_2586 PF00664 ABC transporter transmembrane region CLM_2586 PF00005 ABC transporter CLM_2591 PF00005 ABC transporter CLM_2592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2592 PF00512 His Kinase A (phospho-acceptor) domain CLM_2593 PF00072 Response regulator receiver domain CLM_2593 PF00486 Transcriptional regulatory protein, C terminal CLM_2597 PF01327 Polypeptide deformylase CLM_2602 PF04072 Leucine carboxyl methyltransferase CLM_2616 PF01743 Poly A polymerase head domain CLM_2616 PF12627 Probable RNA and SrmB- binding site of polymerase A CLM_2616 PF13735 tRNA nucleotidyltransferase domain 2 putative CLM_2622 PF00512 His Kinase A (phospho-acceptor) domain CLM_2622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2622 PF00672 HAMP domain CLM_2623 PF00072 Response regulator receiver domain CLM_2623 PF00486 Transcriptional regulatory protein, C terminal CLM_2626 PF01695 IstB-like ATP binding protein CLM_2628 PF01381 Helix-turn-helix CLM_2631 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_2641 PF04865 Baseplate J-like protein CLM_2650 PF09393 Phage tail tube protein CLM_2651 PF17481 Phage tail sheath protein beta-sandwich domain CLM_2651 PF17482 Phage tail sheath C-terminal domain CLM_2651 PF04984 Phage tail sheath protein subtilisin-like domain CLM_2664 PF03592 Terminase small subunit CLM_2670 PF00625 Guanylate kinase CLM_2673 PF00476 DNA polymerase family A CLM_2673 PF09281 Taq polymerase, exonuclease CLM_2673 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLM_2673 PF01367 5'-3' exonuclease, C-terminal SAM fold CLM_2680 PF04542 Sigma-70 region 2 CLM_2680 PF04539 Sigma-70 region 3 CLM_2680 PF04545 Sigma-70, region 4 CLM_2687 PF01134 Glucose inhibited division protein A CLM_2689 PF04070 Domain of unknown function (DUF378) CLM_2690 PF00381 PTS HPr component phosphorylation site CLM_2691 PF00155 Aminotransferase class I and II CLM_2692 PF00892 EamA-like transporter family CLM_2694 PF01040 UbiA prenyltransferase family CLM_2695 PF04232 Stage V sporulation protein S (SpoVS) CLM_2696 PF12072 Domain of unknown function (DUF3552) CLM_2696 PF01966 HD domain CLM_2696 PF00013 KH domain CLM_2697 PF00154 recA bacterial DNA recombination protein CLM_2698 PF01066 CDP-alcohol phosphatidyltransferase CLM_2699 PF04055 Radical SAM superfamily CLM_2699 PF18693 TRAM domain CLM_2699 PF00919 Uncharacterized protein family UPF0004 CLM_2700 PF17854 FtsK alpha domain CLM_2700 PF09397 Ftsk gamma domain CLM_2700 PF01580 FtsK/SpoIIIE family CLM_2701 PF00574 Clp protease CLM_2702 PF13840 ACT domain CLM_2702 PF00696 Amino acid kinase family CLM_2704 PF00675 Insulinase (Peptidase family M16) CLM_2704 PF05193 Peptidase M16 inactive domain CLM_2705 PF03725 3' exoribonuclease family, domain 2 CLM_2705 PF01138 3' exoribonuclease family, domain 1 CLM_2705 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLM_2705 PF00013 KH domain CLM_2705 PF00575 S1 RNA binding domain CLM_2706 PF00312 Ribosomal protein S15 CLM_2707 PF06574 FAD synthetase CLM_2707 PF01687 Riboflavin kinase CLM_2708 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLM_2708 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLM_2709 PF01368 DHH family CLM_2709 PF02272 DHHA1 domain CLM_2710 PF02033 Ribosome-binding factor A CLM_2711 PF04760 Translation initiation factor IF-2, N-terminal region CLM_2711 PF11987 Translation-initiation factor 2 CLM_2711 PF00009 Elongation factor Tu GTP binding domain CLM_2712 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLM_2713 PF04296 Protein of unknown function (DUF448) CLM_2714 PF00575 S1 RNA binding domain CLM_2714 PF08529 NusA N-terminal domain CLM_2714 PF13184 NusA-like KH domain CLM_2715 PF17384 RimP C-terminal SH3 domain CLM_2715 PF02576 RimP N-terminal domain CLM_2716 PF14579 Helix-hairpin-helix motif CLM_2716 PF01336 OB-fold nucleic acid binding domain CLM_2716 PF00929 Exonuclease CLM_2716 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLM_2716 PF11490 DNA polymerase III polC-type N-terminus II CLM_2716 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLM_2716 PF02811 PHP domain CLM_2717 PF04551 GcpE protein CLM_2718 PF02163 Peptidase family M50 CLM_2718 PF17820 PDZ domain CLM_2719 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLM_2719 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLM_2719 PF13288 DXP reductoisomerase C-terminal domain CLM_2724 PF01255 Putative undecaprenyl diphosphate synthase CLM_2725 PF01765 Ribosome recycling factor CLM_2726 PF00696 Amino acid kinase family CLM_2727 PF00889 Elongation factor TS CLM_2728 PF00318 Ribosomal protein S2 CLM_2729 PF08222 CodY helix-turn-helix domain CLM_2729 PF06018 CodY GAF-like domain CLM_2730 PF01131 DNA topoisomerase CLM_2730 PF01751 Toprim domain CLM_2730 PF01396 Topoisomerase DNA binding C4 zinc finger CLM_2731 PF18255 DNA processing protein A sterile alpha motif domain CLM_2731 PF02481 DNA recombination-mediator protein A CLM_2732 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLM_2732 PF01078 Magnesium chelatase, subunit ChlI CLM_2733 PF02021 Uncharacterised protein family UPF0102 CLM_2734 PF01351 Ribonuclease HII CLM_2735 PF01926 50S ribosome-binding GTPase CLM_2736 PF10502 Signal peptidase, peptidase S26 CLM_2737 PF01245 Ribosomal protein L19 CLM_2738 PF01746 tRNA (Guanine-1)-methyltransferase CLM_2739 PF01782 RimM N-terminal domain CLM_2739 PF05239 PRC-barrel domain CLM_2741 PF00886 Ribosomal protein S16 CLM_2742 PF02881 SRP54-type protein, helical bundle domain CLM_2742 PF02978 Signal peptide binding domain CLM_2742 PF00448 SRP54-type protein, GTPase domain CLM_2743 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CLM_2744 PF02881 SRP54-type protein, helical bundle domain CLM_2744 PF00448 SRP54-type protein, GTPase domain CLM_2745 PF02463 RecF/RecN/SMC N terminal domain CLM_2745 PF06470 SMC proteins Flexible Hinge Domain CLM_2748 PF00035 Double-stranded RNA binding motif CLM_2748 PF14622 Ribonuclease-III-like CLM_2749 PF00550 Phosphopantetheine attachment site CLM_2750 PF02504 Fatty acid synthesis protein CLM_2751 PF01783 Ribosomal L32p protein family CLM_2752 PF02620 Large ribosomal RNA subunit accumulation protein YceD CLM_2753 PF00871 Acetokinase family CLM_2754 PF01515 Phosphate acetyl/butaryl transferase CLM_2759 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLM_2761 PF10531 SLBB domain CLM_2761 PF13237 4Fe-4S dicluster domain CLM_2761 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM_2761 PF13375 RnfC Barrel sandwich hybrid domain CLM_2763 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_2763 PF00672 HAMP domain CLM_2763 PF02743 Cache domain CLM_2768 PF13520 Amino acid permease CLM_2770 PF05544 Proline racemase CLM_2776 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLM_2778 PF13375 RnfC Barrel sandwich hybrid domain CLM_2778 PF12838 4Fe-4S dicluster domain CLM_2778 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM_2779 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLM_2780 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM_2780 PF10531 SLBB domain CLM_2780 PF13375 RnfC Barrel sandwich hybrid domain CLM_2780 PF13237 4Fe-4S dicluster domain CLM_2787 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLM_2788 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM_2788 PF13237 4Fe-4S dicluster domain CLM_2788 PF13375 RnfC Barrel sandwich hybrid domain CLM_2788 PF10531 SLBB domain CLM_2789 PF02954 Bacterial regulatory protein, Fis family CLM_2789 PF00158 Sigma-54 interaction domain CLM_2789 PF00989 PAS fold CLM_2790 PF05636 HIGH Nucleotidyl Transferase CLM_2793 PF01467 Cytidylyltransferase-like CLM_2795 PF17191 RecG wedge domain CLM_2795 PF00270 DEAD/DEAH box helicase CLM_2795 PF00271 Helicase conserved C-terminal domain CLM_2796 PF02734 DAK2 domain CLM_2796 PF13684 Dihydroxyacetone kinase family CLM_2797 PF03780 Asp23 family, cell envelope-related function CLM_2798 PF00830 Ribosomal L28 family CLM_2802 PF00834 Ribulose-phosphate 3 epimerase family CLM_2803 PF16745 RsgA N-terminal domain CLM_2803 PF03193 RsgA GTPase CLM_2804 PF00069 Protein kinase domain CLM_2804 PF03793 PASTA domain CLM_2806 PF04055 Radical SAM superfamily CLM_2807 PF01189 16S rRNA methyltransferase RsmB/F CLM_2807 PF01029 NusB family CLM_2808 PF04298 Putative neutral zinc metallopeptidase CLM_2809 PF02911 Formyl transferase, C-terminal domain CLM_2809 PF00551 Formyl transferase CLM_2810 PF01327 Polypeptide deformylase CLM_2811 PF00271 Helicase conserved C-terminal domain CLM_2811 PF17764 3′ DNA-binding domain (3′BD) CLM_2811 PF18074 Primosomal protein N C-terminal domain CLM_2811 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLM_2811 PF04851 Type III restriction enzyme, res subunit CLM_2812 PF02441 Flavoprotein CLM_2812 PF04127 DNA / pantothenate metabolism flavoprotein CLM_2813 PF01192 RNA polymerase Rpb6 CLM_2814 PF00625 Guanylate kinase CLM_2815 PF04025 Domain of unknown function (DUF370) CLM_2816 PF03755 YicC-like family, N-terminal region CLM_2816 PF08340 Domain of unknown function (DUF1732) CLM_2817 PF00710 Asparaginase, N-terminal CLM_2817 PF17763 Glutaminase/Asparaginase C-terminal domain CLM_2823 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLM_2823 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLM_2824 PF01926 50S ribosome-binding GTPase CLM_2824 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLM_2826 PF01895 PhoU domain CLM_2827 PF00005 ABC transporter CLM_2828 PF00528 Binding-protein-dependent transport system inner membrane component CLM_2829 PF00528 Binding-protein-dependent transport system inner membrane component CLM_2830 PF12849 PBP superfamily domain CLM_2831 PF00989 PAS fold CLM_2831 PF00512 His Kinase A (phospho-acceptor) domain CLM_2831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_2831 PF00672 HAMP domain CLM_2832 PF00486 Transcriptional regulatory protein, C terminal CLM_2832 PF00072 Response regulator receiver domain CLM_2834 PF03477 ATP cone domain CLM_2835 PF05239 PRC-barrel domain CLM_2836 PF04545 Sigma-70, region 4 CLM_2836 PF04539 Sigma-70 region 3 CLM_2836 PF04542 Sigma-70 region 2 CLM_2837 PF04545 Sigma-70, region 4 CLM_2837 PF04542 Sigma-70 region 2 CLM_2838 PF03419 Sporulation factor SpoIIGA CLM_2839 PF00091 Tubulin/FtsZ family, GTPase domain CLM_2839 PF12327 FtsZ family, C-terminal domain CLM_2840 PF02491 SHS2 domain inserted in FTSA CLM_2843 PF00437 Type II/IV secretion system protein CLM_2844 PF01488 Shikimate / quinate 5-dehydrogenase CLM_2844 PF08501 Shikimate dehydrogenase substrate binding domain CLM_2845 PF04542 Sigma-70 region 2 CLM_2845 PF04545 Sigma-70, region 4 CLM_2850 PF09557 Domain of unknown function (DUF2382) CLM_2850 PF05239 PRC-barrel domain CLM_2860 PF00905 Penicillin binding protein transpeptidase domain CLM_2861 PF00485 Phosphoribulokinase / Uridine kinase family CLM_2864 PF02618 YceG-like family CLM_2866 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLM_2866 PF00753 Metallo-beta-lactamase superfamily CLM_2866 PF17770 Ribonuclease J C-terminal domain CLM_2867 PF01475 Ferric uptake regulator family CLM_2868 PF06949 Protein of unknown function (DUF1292) CLM_2869 PF03652 Holliday junction resolvase CLM_2870 PF06135 IreB regulatory phosphoprotein CLM_2871 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLM_2871 PF01411 tRNA synthetases class II (A) CLM_2871 PF02272 DHHA1 domain CLM_2872 PF01594 AI-2E family transporter CLM_2874 PF01592 NifU-like N terminal domain CLM_2875 PF00266 Aminotransferase class-V CLM_2876 PF02082 Transcriptional regulator CLM_2877 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLM_2877 PF12002 MgsA AAA+ ATPase C terminal CLM_2877 PF16193 AAA C-terminal domain CLM_2880 PF02645 Uncharacterised protein, DegV family COG1307 CLM_2882 PF02423 Ornithine cyclodeaminase/mu-crystallin family CLM_2883 PF01235 Sodium:alanine symporter family CLM_2884 PF01235 Sodium:alanine symporter family CLM_2887 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLM_2887 PF02769 AIR synthase related protein, C-terminal domain CLM_2887 PF00586 AIR synthase related protein, N-terminal domain CLM_2889 PF00391 PEP-utilising enzyme, mobile domain CLM_2889 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLM_2892 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM_2892 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_2894 PF13193 AMP-binding enzyme C-terminal domain CLM_2894 PF00501 AMP-binding enzyme CLM_2894 PF00668 Condensation domain CLM_2894 PF00550 Phosphopantetheine attachment site CLM_2900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLM_2900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLM_2901 PF00696 Amino acid kinase family CLM_2902 PF00464 Serine hydroxymethyltransferase CLM_2903 PF06738 Putative threonine/serine exporter CLM_2905 PF02583 Metal-sensitive transcriptional repressor CLM_2909 PF01467 Cytidylyltransferase-like CLM_2910 PF00056 lactate/malate dehydrogenase, NAD binding domain CLM_2910 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLM_2912 PF02811 PHP domain CLM_2917 PF10960 BhlA holin family CLM_2935 PF03354 Phage Terminase CLM_2966 PF00589 Phage integrase family CLM_2966 PF02899 Phage integrase, N-terminal SAM-like domain CLM_2967 PF02127 Aminopeptidase I zinc metalloprotease (M18) CLM_2968 PF01544 CorA-like Mg2+ transporter protein CLM_2969 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLM_2970 PF07475 HPr Serine kinase C-terminal domain CLM_2970 PF02603 HPr Serine kinase N terminus CLM_2971 PF05979 Bacterial protein of unknown function (DUF896) CLM_2972 PF09335 SNARE associated Golgi protein CLM_2973 PF09335 SNARE associated Golgi protein CLM_2977 PF00535 Glycosyl transferase family 2 CLM_2978 PF00581 Rhodanese-like domain CLM_2979 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CLM_2982 PF00753 Metallo-beta-lactamase superfamily CLM_2982 PF00258 Flavodoxin CLM_2984 PF01156 Inosine-uridine preferring nucleoside hydrolase CLM_2985 PF01327 Polypeptide deformylase CLM_2987 PF01813 ATP synthase subunit D CLM_2988 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM_2988 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM_2989 PF16886 ATPsynthase alpha/beta subunit N-term extension CLM_2989 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM_2989 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM_2990 PF01990 ATP synthase (F/14-kDa) subunit CLM_2992 PF01991 ATP synthase (E/31 kDa) subunit CLM_2993 PF00137 ATP synthase subunit C CLM_2994 PF01496 V-type ATPase 116kDa subunit family CLM_3000 PF00690 Cation transporter/ATPase, N-terminus CLM_3000 PF00689 Cation transporting ATPase, C-terminus CLM_3001 PF00571 CBS domain CLM_3001 PF01368 DHH family CLM_3001 PF02833 DHHA2 domain CLM_3001 PF07085 DRTGG domain CLM_3003 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM_3003 PF00460 Flagella basal body rod protein CLM_3004 PF00460 Flagella basal body rod protein CLM_3004 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM_3007 PF04545 Sigma-70, region 4 CLM_3007 PF04542 Sigma-70 region 2 CLM_3007 PF04539 Sigma-70 region 3 CLM_3009 PF10609 NUBPL iron-transfer P-loop NTPase CLM_3010 PF00448 SRP54-type protein, GTPase domain CLM_3011 PF00771 FHIPEP family CLM_3012 PF01312 FlhB HrpN YscU SpaS Family CLM_3013 PF01313 Bacterial export proteins, family 3 CLM_3014 PF00813 FliP family CLM_3016 PF03748 Flagellar basal body-associated protein FliL CLM_3017 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLM_3017 PF00691 OmpA family CLM_3018 PF01618 MotA/TolQ/ExbB proton channel family CLM_3019 PF06289 Flagellar and Swarming motility proteins CLM_3020 PF00460 Flagella basal body rod protein CLM_3020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM_3022 PF03963 Flagellar hook capping protein - N-terminal region CLM_3025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM_3025 PF18269 T3SS EscN ATPase C-terminal domain CLM_3025 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM_3027 PF14842 FliG N-terminal domain CLM_3027 PF01706 FliG C-terminal domain CLM_3027 PF14841 FliG middle domain CLM_3028 PF01514 Secretory protein of YscJ/FliF family CLM_3028 PF08345 Flagellar M-ring protein C-terminal CLM_3029 PF02049 Flagellar hook-basal body complex protein FliE CLM_3030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM_3030 PF00460 Flagella basal body rod protein CLM_3031 PF00460 Flagella basal body rod protein CLM_3032 PF00700 Bacterial flagellin C-terminal helical region CLM_3032 PF00669 Bacterial flagellin N-terminal helical region CLM_3034 PF00206 Lyase CLM_3034 PF14698 Argininosuccinate lyase C-terminal CLM_3035 PF00764 Arginosuccinate synthase CLM_3038 PF13091 PLD-like domain CLM_3038 PF13396 Phospholipase_D-nuclease N-terminal CLM_3039 PF06081 Aromatic acid exporter family member 1 CLM_3043 PF16363 GDP-mannose 4,6 dehydratase CLM_3044 PF08666 SAF domain CLM_3044 PF03102 NeuB family CLM_3045 PF02348 Cytidylyltransferase CLM_3049 PF03275 UDP-galactopyranose mutase CLM_3050 PF02397 Bacterial sugar transferase CLM_3051 PF13614 AAA domain CLM_3053 PF13807 G-rich domain on putative tyrosine kinase CLM_3053 PF02706 Chain length determinant protein CLM_3054 PF03816 Cell envelope-related transcriptional attenuator domain CLM_3059 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3060 PF00700 Bacterial flagellin C-terminal helical region CLM_3060 PF00669 Bacterial flagellin N-terminal helical region CLM_3064 PF04101 Glycosyltransferase family 28 C-terminal domain CLM_3067 PF00535 Glycosyl transferase family 2 CLM_3079 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLM_3079 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLM_3079 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLM_3081 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLM_3082 PF08889 WbqC-like protein family CLM_3084 PF00483 Nucleotidyl transferase CLM_3085 PF16363 GDP-mannose 4,6 dehydratase CLM_3086 PF03102 NeuB family CLM_3086 PF08666 SAF domain CLM_3087 PF02348 Cytidylyltransferase CLM_3089 PF01820 D-ala D-ala ligase N-terminus CLM_3089 PF07478 D-ala D-ala ligase C-terminus CLM_3090 PF16363 GDP-mannose 4,6 dehydratase CLM_3091 PF02719 Polysaccharide biosynthesis protein CLM_3092 PF13181 Tetratricopeptide repeat CLM_3092 PF00535 Glycosyl transferase family 2 CLM_3095 PF00535 Glycosyl transferase family 2 CLM_3096 PF00700 Bacterial flagellin C-terminal helical region CLM_3096 PF00669 Bacterial flagellin N-terminal helical region CLM_3097 PF00669 Bacterial flagellin N-terminal helical region CLM_3097 PF00700 Bacterial flagellin C-terminal helical region CLM_3099 PF07195 Flagellar hook-associated protein 2 C-terminus CLM_3099 PF02465 Flagellar hook-associated protein 2 N-terminus CLM_3099 PF07196 Flagellin hook IN motif CLM_3100 PF02561 Flagellar protein FliS CLM_3103 PF02599 Global regulator protein family CLM_3104 PF02623 FliW protein CLM_3106 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM_3106 PF00460 Flagella basal body rod protein CLM_3109 PF04509 CheC-like family CLM_3109 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLM_3110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLM_3110 PF02154 Flagellar motor switch protein FliM CLM_3111 PF01584 CheW-like domain CLM_3112 PF00072 Response regulator receiver domain CLM_3113 PF04509 CheC-like family CLM_3114 PF07194 P2 response regulator binding domain CLM_3114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_3114 PF01627 Hpt domain CLM_3114 PF01584 CheW-like domain CLM_3114 PF02895 Signal transducing histidine kinase, homodimeric domain CLM_3115 PF03705 CheR methyltransferase, all-alpha domain CLM_3115 PF01739 CheR methyltransferase, SAM binding domain CLM_3116 PF00072 Response regulator receiver domain CLM_3116 PF01339 CheB methylesterase CLM_3117 PF03975 CheD chemotactic sensory transduction CLM_3118 PF01584 CheW-like domain CLM_3120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_3120 PF00367 phosphotransferase system, EIIB CLM_3120 PF02378 Phosphotransferase system, EIIC CLM_3121 PF03123 CAT RNA binding domain CLM_3121 PF00874 PRD domain CLM_3122 PF01063 Amino-transferase class IV CLM_3126 PF10371 Domain of unknown function CLM_3126 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLM_3126 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLM_3126 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLM_3126 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLM_3127 PF04101 Glycosyltransferase family 28 C-terminal domain CLM_3127 PF03033 Glycosyltransferase family 28 N-terminal domain CLM_3129 PF00989 PAS fold CLM_3129 PF00512 His Kinase A (phospho-acceptor) domain CLM_3129 PF18698 Histidine kinase sensor domain CLM_3129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_3129 PF00672 HAMP domain CLM_3130 PF01368 DHH family CLM_3130 PF02272 DHHA1 domain CLM_3130 PF17768 RecJ OB domain CLM_3130 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLM_3132 PF00578 AhpC/TSA family CLM_3136 PF04309 Glycerol-3-phosphate responsive antiterminator CLM_3137 PF03989 DNA gyrase C-terminal domain, beta-propeller CLM_3137 PF00521 DNA gyrase/topoisomerase IV, subunit A CLM_3138 PF01751 Toprim domain CLM_3138 PF00986 DNA gyrase B subunit, carboxyl terminus CLM_3138 PF00204 DNA gyrase B CLM_3138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_3140 PF00999 Sodium/hydrogen exchanger family CLM_3143 PF01522 Polysaccharide deacetylase CLM_3143 PF00457 Glycosyl hydrolases family 11 CLM_3143 PF03422 Carbohydrate binding module (family 6) CLM_3145 PF16363 GDP-mannose 4,6 dehydratase CLM_3146 PF00258 Flavodoxin CLM_3148 PF12833 Helix-turn-helix domain CLM_3149 PF02016 LD-carboxypeptidase N-terminal domain CLM_3149 PF17676 LD-carboxypeptidase C-terminal domain CLM_3150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLM_3150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLM_3151 PF00230 Major intrinsic protein CLM_3155 PF00005 ABC transporter CLM_3156 PF00392 Bacterial regulatory proteins, gntR family CLM_3157 PF04892 VanZ like family CLM_3158 PF03063 Prismane/CO dehydrogenase family CLM_3160 PF02073 Thermophilic metalloprotease (M29) CLM_3162 PF03845 Spore germination protein CLM_3163 PF03323 Bacillus/Clostridium GerA spore germination protein CLM_3165 PF01522 Polysaccharide deacetylase CLM_3166 PF00271 Helicase conserved C-terminal domain CLM_3166 PF00270 DEAD/DEAH box helicase CLM_3169 PF17202 Single cache domain 3 CLM_3169 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3169 PF00672 HAMP domain CLM_3173 PF04960 Glutaminase CLM_3174 PF06725 3D domain CLM_3174 PF01476 LysM domain CLM_3175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3175 PF00672 HAMP domain CLM_3175 PF02743 Cache domain CLM_3177 PF00268 Ribonucleotide reductase, small chain CLM_3178 PF03477 ATP cone domain CLM_3178 PF00317 Ribonucleotide reductase, all-alpha domain CLM_3178 PF02867 Ribonucleotide reductase, barrel domain CLM_3181 PF11798 IMS family HHH motif CLM_3181 PF11799 impB/mucB/samB family C-terminal domain CLM_3181 PF00817 impB/mucB/samB family CLM_3182 PF01180 Dihydroorotate dehydrogenase CLM_3183 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLM_3183 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_3184 PF00156 Phosphoribosyl transferase domain CLM_3187 PF17760 UvrA interaction domain CLM_3187 PF00005 ABC transporter CLM_3187 PF17755 UvrA DNA-binding domain CLM_3191 PF00672 HAMP domain CLM_3191 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3191 PF12729 Four helix bundle sensory module for signal transduction CLM_3193 PF00293 NUDIX domain CLM_3193 PF13344 Haloacid dehalogenase-like hydrolase CLM_3194 PF01475 Ferric uptake regulator family CLM_3196 PF00704 Glycosyl hydrolases family 18 CLM_3196 PF00041 Fibronectin type III domain CLM_3197 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLM_3198 PF01979 Amidohydrolase family CLM_3200 PF00874 PRD domain CLM_3200 PF03123 CAT RNA binding domain CLM_3201 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLM_3202 PF00367 phosphotransferase system, EIIB CLM_3202 PF02378 Phosphotransferase system, EIIC CLM_3203 PF01554 MatE CLM_3204 PF01458 Uncharacterized protein family (UPF0051) CLM_3205 PF08402 TOBE domain CLM_3205 PF00005 ABC transporter CLM_3207 PF01475 Ferric uptake regulator family CLM_3208 PF01554 MatE CLM_3209 PF00753 Metallo-beta-lactamase superfamily CLM_3209 PF00258 Flavodoxin CLM_3209 PF00301 Rubredoxin CLM_3210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM_3210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM_3210 PF02770 Acyl-CoA dehydrogenase, middle domain CLM_3211 PF00665 Integrase core domain CLM_3211 PF13333 Integrase core domain CLM_3215 PF03609 PTS system sorbose-specific iic component CLM_3216 PF03613 PTS system mannose/fructose/sorbose family IID component CLM_3218 PF01144 Coenzyme A transferase CLM_3219 PF01144 Coenzyme A transferase CLM_3220 PF12804 MobA-like NTP transferase domain CLM_3221 PF01799 [2Fe-2S] binding domain CLM_3221 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM_3223 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM_3223 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLM_3227 PF00999 Sodium/hydrogen exchanger family CLM_3236 PF04055 Radical SAM superfamily CLM_3237 PF12848 ABC transporter CLM_3237 PF00005 ABC transporter CLM_3239 PF07930 D-aminopeptidase, domain B CLM_3239 PF00144 Beta-lactamase CLM_3240 PF00440 Bacterial regulatory proteins, tetR family CLM_3247 PF13302 Acetyltransferase (GNAT) domain CLM_3254 PF00005 ABC transporter CLM_3254 PF00664 ABC transporter transmembrane region CLM_3255 PF05958 tRNA (Uracil-5-)-methyltransferase CLM_3257 PF00884 Sulfatase CLM_3258 PF01925 Sulfite exporter TauE/SafE CLM_3259 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLM_3260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLM_3260 PF00925 GTP cyclohydrolase II CLM_3261 PF00677 Lumazine binding domain CLM_3262 PF01872 RibD C-terminal domain CLM_3262 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM_3264 PF01546 Peptidase family M20/M25/M40 CLM_3264 PF07687 Peptidase dimerisation domain CLM_3265 PF00753 Metallo-beta-lactamase superfamily CLM_3265 PF16123 Hydroxyacylglutathione hydrolase C-terminus CLM_3266 PF00690 Cation transporter/ATPase, N-terminus CLM_3266 PF00689 Cation transporting ATPase, C-terminus CLM_3269 PF02844 Phosphoribosylglycinamide synthetase, N domain CLM_3269 PF02843 Phosphoribosylglycinamide synthetase, C domain CLM_3269 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLM_3270 PF01808 AICARFT/IMPCHase bienzyme CLM_3270 PF02142 MGS-like domain CLM_3271 PF00551 Formyl transferase CLM_3272 PF00586 AIR synthase related protein, N-terminal domain CLM_3272 PF02769 AIR synthase related protein, C-terminal domain CLM_3273 PF00156 Phosphoribosyl transferase domain CLM_3274 PF01259 SAICAR synthetase CLM_3275 PF00731 AIR carboxylase CLM_3277 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLM_3277 PF01799 [2Fe-2S] binding domain CLM_3277 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM_3277 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM_3278 PF01546 Peptidase family M20/M25/M40 CLM_3278 PF07687 Peptidase dimerisation domain CLM_3279 PF01979 Amidohydrolase family CLM_3280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLM_3280 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_3281 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLM_3281 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLM_3282 PF01979 Amidohydrolase family CLM_3283 PF00860 Permease family CLM_3284 PF00291 Pyridoxal-phosphate dependent enzyme CLM_3287 PF12804 MobA-like NTP transferase domain CLM_3287 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_3288 PF02625 XdhC and CoxI family CLM_3288 PF13478 XdhC Rossmann domain CLM_3292 PF00005 ABC transporter CLM_3297 PF00860 Permease family CLM_3299 PF01235 Sodium:alanine symporter family CLM_3300 PF13538 UvrD-like helicase C-terminal domain CLM_3303 PF01546 Peptidase family M20/M25/M40 CLM_3304 PF13185 GAF domain CLM_3305 PF03471 Transporter associated domain CLM_3305 PF00571 CBS domain CLM_3305 PF01595 Cyclin M transmembrane N-terminal domain CLM_3306 PF01910 Thiamine-binding protein CLM_3307 PF01964 Radical SAM ThiC family CLM_3308 PF00156 Phosphoribosyl transferase domain CLM_3314 PF00005 ABC transporter CLM_3315 PF00392 Bacterial regulatory proteins, gntR family CLM_3316 PF17099 Tryptophan transporter TrpP CLM_3318 PF00027 Cyclic nucleotide-binding domain CLM_3318 PF00325 Bacterial regulatory proteins, crp family CLM_3319 PF07486 Cell Wall Hydrolase CLM_3322 PF01061 ABC-2 type transporter CLM_3323 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM_3325 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLM_3326 PF01595 Cyclin M transmembrane N-terminal domain CLM_3326 PF03471 Transporter associated domain CLM_3326 PF00571 CBS domain CLM_3329 PF01784 NIF3 (NGG1p interacting factor 3) CLM_3332 PF04545 Sigma-70, region 4 CLM_3332 PF04539 Sigma-70 region 3 CLM_3332 PF04542 Sigma-70 region 2 CLM_3332 PF00140 Sigma-70 factor, region 1.2 CLM_3332 PF03979 Sigma-70 factor, region 1.1 CLM_3333 PF08275 DNA primase catalytic core, N-terminal domain CLM_3333 PF10410 DnaB-helicase binding domain of primase CLM_3333 PF01807 CHC2 zinc finger CLM_3334 PF01966 HD domain CLM_3334 PF13286 Phosphohydrolase-associated domain CLM_3336 PF00391 PEP-utilising enzyme, mobile domain CLM_3336 PF02896 PEP-utilising enzyme, TIM barrel domain CLM_3336 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLM_3337 PF00571 CBS domain CLM_3337 PF08279 HTH domain CLM_3338 PF00889 Elongation factor TS CLM_3340 PF01926 50S ribosome-binding GTPase CLM_3340 PF07650 KH domain CLM_3341 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM_3343 PF02130 Uncharacterized protein family UPF0054 CLM_3344 PF07698 7TM receptor with intracellular HD hydrolase CLM_3344 PF07697 7TM-HD extracellular CLM_3344 PF01966 HD domain CLM_3347 PF09424 Yqey-like protein CLM_3348 PF01165 Ribosomal protein S21 CLM_3349 PF01230 HIT domain CLM_3350 PF00919 Uncharacterized protein family UPF0004 CLM_3350 PF01938 TRAM domain CLM_3350 PF04055 Radical SAM superfamily CLM_3351 PF04452 RNA methyltransferase CLM_3353 PF00684 DnaJ central domain CLM_3353 PF01556 DnaJ C terminal domain CLM_3353 PF00226 DnaJ domain CLM_3354 PF00012 Hsp70 protein CLM_3355 PF01025 GrpE CLM_3356 PF01628 HrcA protein C terminal domain CLM_3357 PF06969 HemN C-terminal domain CLM_3357 PF04055 Radical SAM superfamily CLM_3358 PF00009 Elongation factor Tu GTP binding domain CLM_3358 PF03144 Elongation factor Tu domain 2 CLM_3358 PF00679 Elongation factor G C-terminus CLM_3358 PF06421 GTP-binding protein LepA C-terminus CLM_3361 PF03418 Germination protease CLM_3362 PF01649 Ribosomal protein S20 CLM_3366 PF00690 Cation transporter/ATPase, N-terminus CLM_3366 PF00689 Cation transporting ATPase, C-terminus CLM_3367 PF07556 Protein of unknown function (DUF1538) CLM_3370 PF03144 Elongation factor Tu domain 2 CLM_3370 PF09105 Elongation factor SelB, winged helix CLM_3370 PF09107 Elongation factor SelB, winged helix CLM_3370 PF00009 Elongation factor Tu GTP binding domain CLM_3370 PF09106 Elongation factor SelB, winged helix CLM_3371 PF12390 Selenocysteine synthase N terminal CLM_3371 PF03841 L-seryl-tRNA selenium transferase CLM_3372 PF00586 AIR synthase related protein, N-terminal domain CLM_3372 PF02769 AIR synthase related protein, C-terminal domain CLM_3374 PF07943 Penicillin-binding protein 5, C-terminal domain CLM_3374 PF00768 D-alanyl-D-alanine carboxypeptidase CLM_3375 PF01479 S4 domain CLM_3375 PF00849 RNA pseudouridylate synthase CLM_3376 PF01042 Endoribonuclease L-PSP CLM_3377 PF03816 Cell envelope-related transcriptional attenuator domain CLM_3378 PF01966 HD domain CLM_3379 PF01467 Cytidylyltransferase-like CLM_3380 PF01985 CRS1 / YhbY (CRM) domain CLM_3381 PF01926 50S ribosome-binding GTPase CLM_3381 PF01018 GTP1/OBG CLM_3381 PF09269 Domain of unknown function (DUF1967) CLM_3382 PF01016 Ribosomal L27 protein CLM_3384 PF00829 Ribosomal prokaryotic L21 protein CLM_3386 PF10150 Ribonuclease E/G family CLM_3386 PF00575 S1 RNA binding domain CLM_3389 PF02163 Peptidase family M50 CLM_3389 PF00571 CBS domain CLM_3390 PF01551 Peptidase family M23 CLM_3390 PF04225 Opacity-associated protein A LysM-like domain CLM_3391 PF01098 Cell cycle protein CLM_3392 PF03776 Septum formation topological specificity factor MinE CLM_3393 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_3394 PF03775 Septum formation inhibitor MinC, C-terminal domain CLM_3399 PF04002 RadC-like JAB domain CLM_3400 PF02545 Maf-like protein CLM_3405 PF13291 ACT domain CLM_3410 PF01121 Dephospho-CoA kinase CLM_3411 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLM_3411 PF00476 DNA polymerase family A CLM_3411 PF01367 5'-3' exonuclease, C-terminal SAM fold CLM_3412 PF01264 Chorismate synthase CLM_3444 PF01695 IstB-like ATP binding protein CLM_3451 PF03062 MBOAT, membrane-bound O-acyltransferase family CLM_3453 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLM_3459 PF02938 GAD domain CLM_3459 PF00152 tRNA synthetases class II (D, K and N) CLM_3459 PF01336 OB-fold nucleic acid binding domain CLM_3460 PF03129 Anticodon binding domain CLM_3460 PF13393 Histidyl-tRNA synthetase CLM_3461 PF04055 Radical SAM superfamily CLM_3462 PF00753 Metallo-beta-lactamase superfamily CLM_3463 PF02580 D-Tyr-tRNA(Tyr) deacylase CLM_3464 PF02824 TGS domain CLM_3464 PF04607 Region found in RelA / SpoT proteins CLM_3464 PF13291 ACT domain CLM_3465 PF00156 Phosphoribosyl transferase domain CLM_3467 PF02355 Protein export membrane protein CLM_3467 PF07549 SecD/SecF GG Motif CLM_3468 PF02355 Protein export membrane protein CLM_3468 PF07549 SecD/SecF GG Motif CLM_3472 PF02699 Preprotein translocase subunit CLM_3473 PF01702 Queuine tRNA-ribosyltransferase CLM_3474 PF02547 Queuosine biosynthesis protein CLM_3475 PF17864 RuvB AAA lid domain CLM_3475 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLM_3475 PF05491 RuvB C-terminal winged helix domain CLM_3476 PF07499 RuvA, C-terminal domain CLM_3476 PF01330 RuvA N terminal domain CLM_3478 PF01709 Transcriptional regulator CLM_3479 PF01205 Uncharacterized protein family UPF0029 CLM_3479 PF09186 Domain of unknown function (DUF1949) CLM_3481 PF00155 Aminotransferase class I and II CLM_3481 PF00392 Bacterial regulatory proteins, gntR family CLM_3484 PF00301 Rubredoxin CLM_3485 PF13167 GTP-binding GTPase N-terminal CLM_3485 PF01926 50S ribosome-binding GTPase CLM_3485 PF16360 GTP-binding GTPase Middle Region CLM_3488 PF00905 Penicillin binding protein transpeptidase domain CLM_3488 PF00912 Transglycosylase CLM_3489 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLM_3490 PF07451 Stage V sporulation protein AD (SpoVAD) CLM_3491 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLM_3492 PF04545 Sigma-70, region 4 CLM_3492 PF04542 Sigma-70 region 2 CLM_3492 PF04539 Sigma-70 region 3 CLM_3493 PF13581 Histidine kinase-like ATPase domain CLM_3494 PF01740 STAS domain CLM_3495 PF17284 Spermidine synthase tetramerisation domain CLM_3496 PF02384 N-6 DNA Methylase CLM_3497 PF01522 Polysaccharide deacetylase CLM_3498 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLM_3499 PF02397 Bacterial sugar transferase CLM_3501 PF03023 Lipid II flippase MurJ CLM_3503 PF13439 Glycosyltransferase Family 4 CLM_3503 PF00534 Glycosyl transferases group 1 CLM_3505 PF13579 Glycosyl transferase 4-like domain CLM_3506 PF02350 UDP-N-acetylglucosamine 2-epimerase CLM_3507 PF00534 Glycosyl transferases group 1 CLM_3507 PF13439 Glycosyltransferase Family 4 CLM_3513 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLM_3513 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLM_3514 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLM_3514 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLM_3514 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLM_3515 PF02719 Polysaccharide biosynthesis protein CLM_3516 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLM_3517 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_3517 PF00395 S-layer homology domain CLM_3518 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLM_3518 PF05036 Sporulation related domain CLM_3518 PF08239 Bacterial SH3 domain CLM_3519 PF00483 Nucleotidyl transferase CLM_3521 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLM_3521 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLM_3521 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLM_3521 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLM_3522 PF14693 Ribosomal protein TL5, C-terminal domain CLM_3522 PF01386 Ribosomal L25p family CLM_3523 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLM_3523 PF01276 Orn/Lys/Arg decarboxylase, major domain CLM_3525 PF01515 Phosphate acetyl/butaryl transferase CLM_3526 PF01070 FMN-dependent dehydrogenase CLM_3527 PF04463 Protein of unknown function (DUF523) CLM_3528 PF01713 Smr domain CLM_3528 PF00488 MutS domain V CLM_3529 PF12392 Collagenase CLM_3529 PF01136 Peptidase family U32 CLM_3535 PF00535 Glycosyl transferase family 2 CLM_3535 PF13181 Tetratricopeptide repeat CLM_3537 PF03483 B3/4 domain CLM_3537 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLM_3537 PF01588 Putative tRNA binding domain CLM_3537 PF03147 Ferredoxin-fold anticodon binding domain CLM_3537 PF03484 tRNA synthetase B5 domain CLM_3538 PF01409 tRNA synthetases class II core domain (F) CLM_3538 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLM_3539 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLM_3539 PF00588 SpoU rRNA Methylase family CLM_3540 PF02254 TrkA-N domain CLM_3540 PF02080 TrkA-C domain CLM_3541 PF02386 Cation transport protein CLM_3542 PF00453 Ribosomal protein L20 CLM_3543 PF01632 Ribosomal protein L35 CLM_3544 PF05198 Translation initiation factor IF-3, N-terminal domain CLM_3544 PF00707 Translation initiation factor IF-3, C-terminal domain CLM_3546 PF02824 TGS domain CLM_3546 PF03129 Anticodon binding domain CLM_3546 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_3546 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLM_3550 PF13732 Domain of unknown function (DUF4162) CLM_3550 PF00005 ABC transporter CLM_3556 PF01430 Hsp33 protein CLM_3557 PF13649 Methyltransferase domain CLM_3559 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLM_3559 PF00005 ABC transporter CLM_3560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLM_3560 PF00005 ABC transporter CLM_3561 PF00528 Binding-protein-dependent transport system inner membrane component CLM_3561 PF12911 N-terminal TM domain of oligopeptide transport permease C CLM_3562 PF00528 Binding-protein-dependent transport system inner membrane component CLM_3563 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLM_3564 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLM_3564 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLM_3565 PF00701 Dihydrodipicolinate synthetase family CLM_3566 PF05173 Dihydrodipicolinate reductase, C-terminus CLM_3566 PF01113 Dihydrodipicolinate reductase, N-terminus CLM_3567 PF00155 Aminotransferase class I and II CLM_3568 PF14602 Hexapeptide repeat of succinyl-transferase CLM_3568 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_3568 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CLM_3571 PF01522 Polysaccharide deacetylase CLM_3575 PF08245 Mur ligase middle domain CLM_3575 PF02875 Mur ligase family, glutamate ligase domain CLM_3576 PF08264 Anticodon-binding domain of tRNA CLM_3576 PF00133 tRNA synthetases class I (I, L, M and V) CLM_3576 PF10458 Valyl tRNA synthetase tRNA binding arm CLM_3577 PF00583 Acetyltransferase (GNAT) family CLM_3578 PF00005 ABC transporter CLM_3582 PF00005 ABC transporter CLM_3583 PF00528 Binding-protein-dependent transport system inner membrane component CLM_3586 PF02631 RecX family CLM_3587 PF00675 Insulinase (Peptidase family M16) CLM_3587 PF05193 Peptidase M16 inactive domain CLM_3593 PF06865 Pyrimidine/purine nucleoside phosphorylase CLM_3594 PF03807 NADP oxidoreductase coenzyme F420-dependent CLM_3594 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLM_3595 PF02901 Pyruvate formate lyase-like CLM_3595 PF01228 Glycine radical CLM_3596 PF04055 Radical SAM superfamily CLM_3598 PF00533 BRCA1 C Terminus (BRCT) domain CLM_3598 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CLM_3598 PF03120 NAD-dependent DNA ligase OB-fold domain CLM_3598 PF01653 NAD-dependent DNA ligase adenylation domain CLM_3598 PF12826 Helix-hairpin-helix motif CLM_3601 PF07728 AAA domain (dynein-related subfamily) CLM_3601 PF12592 Protein of unknown function (DUF3763) CLM_3601 PF17868 AAA lid domain CLM_3607 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_3608 PF13426 PAS domain CLM_3608 PF00158 Sigma-54 interaction domain CLM_3608 PF02954 Bacterial regulatory protein, Fis family CLM_3609 PF01012 Electron transfer flavoprotein domain CLM_3609 PF00766 Electron transfer flavoprotein FAD-binding domain CLM_3610 PF01012 Electron transfer flavoprotein domain CLM_3611 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM_3611 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM_3611 PF02770 Acyl-CoA dehydrogenase, middle domain CLM_3612 PF00108 Thiolase, N-terminal domain CLM_3612 PF02803 Thiolase, C-terminal domain CLM_3613 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLM_3613 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLM_3614 PF00378 Enoyl-CoA hydratase/isomerase CLM_3616 PF01541 GIY-YIG catalytic domain CLM_3616 PF12826 Helix-hairpin-helix motif CLM_3616 PF08459 UvrC Helix-hairpin-helix N-terminal CLM_3616 PF02151 UvrB/uvrC motif CLM_3617 PF00860 Permease family CLM_3618 PF01966 HD domain CLM_3620 PF01790 Prolipoprotein diacylglyceryl transferase CLM_3623 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM_3624 PF00672 HAMP domain CLM_3624 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_3624 PF02743 Cache domain CLM_3625 PF02915 Rubrerythrin CLM_3626 PF04055 Radical SAM superfamily CLM_3627 PF02901 Pyruvate formate lyase-like CLM_3627 PF01228 Glycine radical CLM_3629 PF14693 Ribosomal protein TL5, C-terminal domain CLM_3629 PF01386 Ribosomal L25p family CLM_3631 PF01475 Ferric uptake regulator family CLM_3634 PF08279 HTH domain CLM_3634 PF13280 WYL domain CLM_3639 PF01926 50S ribosome-binding GTPase CLM_3640 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLM_3640 PF00004 ATPase family associated with various cellular activities (AAA) CLM_3640 PF05362 Lon protease (S16) C-terminal proteolytic domain CLM_3641 PF00004 ATPase family associated with various cellular activities (AAA) CLM_3641 PF05362 Lon protease (S16) C-terminal proteolytic domain CLM_3642 PF07724 AAA domain (Cdc48 subfamily) CLM_3642 PF10431 C-terminal, D2-small domain, of ClpB protein CLM_3642 PF06689 ClpX C4-type zinc finger CLM_3643 PF00574 Clp protease CLM_3644 PF05698 Bacterial trigger factor protein (TF) C-terminus CLM_3644 PF05697 Bacterial trigger factor protein (TF) CLM_3644 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLM_3645 PF01261 Xylose isomerase-like TIM barrel CLM_3647 PF00156 Phosphoribosyl transferase domain CLM_3648 PF01180 Dihydroorotate dehydrogenase CLM_3649 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLM_3650 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLM_3651 PF01979 Amidohydrolase family CLM_3652 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CLM_3652 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CLM_3653 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLM_3653 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLM_3655 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_3657 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_3658 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_3660 PF00005 ABC transporter CLM_3662 PF00528 Binding-protein-dependent transport system inner membrane component CLM_3695 PF01725 Ham1 family CLM_3698 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLM_3699 PF02637 GatB domain CLM_3699 PF02934 GatB/GatE catalytic domain CLM_3700 PF01425 Amidase CLM_3701 PF02686 Glu-tRNAGln amidotransferase C subunit CLM_3704 PF12826 Helix-hairpin-helix motif CLM_3704 PF03120 NAD-dependent DNA ligase OB-fold domain CLM_3704 PF00533 BRCA1 C Terminus (BRCT) domain CLM_3704 PF01653 NAD-dependent DNA ligase adenylation domain CLM_3705 PF00580 UvrD/REP helicase N-terminal domain CLM_3705 PF13361 UvrD-like helicase C-terminal domain CLM_3706 PF01371 Trp repressor protein CLM_3707 PF00849 RNA pseudouridylate synthase CLM_3707 PF01479 S4 domain CLM_3708 PF01464 Transglycosylase SLT domain CLM_3711 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLM_3712 PF00342 Phosphoglucose isomerase CLM_3714 PF17934 Tetracyclin repressor-like, C-terminal domain CLM_3714 PF00440 Bacterial regulatory proteins, tetR family CLM_3716 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM_3716 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM_3717 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM_3717 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM_3719 PF01012 Electron transfer flavoprotein domain CLM_3719 PF00766 Electron transfer flavoprotein FAD-binding domain CLM_3719 PF13237 4Fe-4S dicluster domain CLM_3720 PF01012 Electron transfer flavoprotein domain CLM_3721 PF02770 Acyl-CoA dehydrogenase, middle domain CLM_3721 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM_3721 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM_3722 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_3723 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_3724 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_3725 PF02515 CoA-transferase family III CLM_3726 PF00501 AMP-binding enzyme CLM_3726 PF13193 AMP-binding enzyme C-terminal domain CLM_3727 PF05525 Branched-chain amino acid transport protein CLM_3728 PF00958 GMP synthase C terminal domain CLM_3728 PF00117 Glutamine amidotransferase class-I CLM_3728 PF02540 NAD synthase CLM_3729 PF00478 IMP dehydrogenase / GMP reductase domain CLM_3729 PF00571 CBS domain CLM_3731 PF01171 PP-loop family CLM_3732 PF00118 TCP-1/cpn60 chaperonin family CLM_3733 PF00166 Chaperonin 10 Kd subunit CLM_3734 PF09335 SNARE associated Golgi protein CLM_3738 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_3738 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLM_3738 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLM_3739 PF00175 Oxidoreductase NAD-binding domain CLM_3739 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLM_3740 PF02629 CoA binding domain CLM_3740 PF06971 Putative DNA-binding protein N-terminus CLM_3741 PF12848 ABC transporter CLM_3741 PF16326 ABC transporter C-terminal domain CLM_3741 PF00005 ABC transporter CLM_3742 PF04397 LytTr DNA-binding domain CLM_3742 PF00072 Response regulator receiver domain CLM_3743 PF06580 Histidine kinase CLM_3743 PF07694 5TMR of 5TMR-LYT CLM_3744 PF02554 Carbon starvation protein CstA CLM_3745 PF08367 Peptidase M16C associated CLM_3745 PF05193 Peptidase M16 inactive domain CLM_3745 PF00675 Insulinase (Peptidase family M16) CLM_3746 PF00289 Biotin carboxylase, N-terminal domain CLM_3746 PF00364 Biotin-requiring enzyme CLM_3746 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM_3746 PF00682 HMGL-like CLM_3746 PF02436 Conserved carboxylase domain CLM_3746 PF02785 Biotin carboxylase C-terminal domain CLM_3747 PF00814 Glycoprotease family CLM_3750 PF04324 BFD-like [2Fe-2S] binding domain CLM_3750 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_3754 PF01297 Zinc-uptake complex component A periplasmic CLM_3755 PF01966 HD domain CLM_3756 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLM_3757 PF00814 Glycoprotease family CLM_3758 PF00583 Acetyltransferase (GNAT) family CLM_3759 PF01479 S4 domain CLM_3759 PF00579 tRNA synthetases class I (W and Y) CLM_3765 PF03144 Elongation factor Tu domain 2 CLM_3765 PF00009 Elongation factor Tu GTP binding domain CLM_3765 PF16658 Class II release factor RF3, C-terminal domain CLM_3767 PF00579 tRNA synthetases class I (W and Y) CLM_3769 PF01880 Desulfoferrodoxin CLM_3769 PF06397 Desulfoferrodoxin, N-terminal domain CLM_3771 PF00082 Subtilase family CLM_3773 PF00005 ABC transporter CLM_3778 PF00005 ABC transporter CLM_3778 PF00664 ABC transporter transmembrane region CLM_3779 PF10091 Putative glucoamylase CLM_3779 PF06165 Glycosyltransferase family 36 CLM_3779 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CLM_3780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLM_3780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLM_3781 PF00696 Amino acid kinase family CLM_3781 PF13840 ACT domain CLM_3783 PF02127 Aminopeptidase I zinc metalloprotease (M18) CLM_3784 PF16916 Dimerisation domain of Zinc Transporter CLM_3784 PF01545 Cation efflux family CLM_3786 PF13538 UvrD-like helicase C-terminal domain CLM_3787 PF06480 FtsH Extracellular CLM_3787 PF01434 Peptidase family M41 CLM_3787 PF17862 AAA+ lid domain CLM_3787 PF00004 ATPase family associated with various cellular activities (AAA) CLM_3788 PF01546 Peptidase family M20/M25/M40 CLM_3789 PF03129 Anticodon binding domain CLM_3789 PF09180 Prolyl-tRNA synthetase, C-terminal CLM_3789 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_3790 PF01541 GIY-YIG catalytic domain CLM_3792 PF00005 ABC transporter CLM_3792 PF13732 Domain of unknown function (DUF4162) CLM_3794 PF04542 Sigma-70 region 2 CLM_3794 PF08281 Sigma-70, region 4 CLM_3795 PF00916 Sulfate permease family CLM_3795 PF01740 STAS domain CLM_3796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_3796 PF00512 His Kinase A (phospho-acceptor) domain CLM_3797 PF00486 Transcriptional regulatory protein, C terminal CLM_3797 PF00072 Response regulator receiver domain CLM_3799 PF00005 ABC transporter CLM_3803 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLM_3804 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLM_3805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLM_3806 PF03610 PTS system fructose IIA component CLM_3806 PF00874 PRD domain CLM_3806 PF00158 Sigma-54 interaction domain CLM_3807 PF02378 Phosphotransferase system, EIIC CLM_3808 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLM_3808 PF02056 Family 4 glycosyl hydrolase CLM_3809 PF00990 Diguanylate cyclase, GGDEF domain CLM_3809 PF00563 EAL domain CLM_3809 PF00360 Phytochrome region CLM_3809 PF01590 GAF domain CLM_3810 PF02899 Phage integrase, N-terminal SAM-like domain CLM_3810 PF00589 Phage integrase family CLM_3811 PF02675 S-adenosylmethionine decarboxylase CLM_3817 PF00248 Aldo/keto reductase family CLM_3818 PF03358 NADPH-dependent FMN reductase CLM_3819 PF13411 MerR HTH family regulatory protein CLM_3820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM_3822 PF06445 GyrI-like small molecule binding domain CLM_3822 PF12833 Helix-turn-helix domain CLM_3823 PF01872 RibD C-terminal domain CLM_3827 PF02082 Transcriptional regulator CLM_3828 PF00583 Acetyltransferase (GNAT) family CLM_3829 PF05958 tRNA (Uracil-5-)-methyltransferase CLM_3829 PF01938 TRAM domain CLM_3834 PF00224 Pyruvate kinase, barrel domain CLM_3834 PF02887 Pyruvate kinase, alpha/beta domain CLM_3835 PF00365 Phosphofructokinase CLM_3836 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLM_3836 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLM_3836 PF14579 Helix-hairpin-helix motif CLM_3836 PF02811 PHP domain CLM_3836 PF01336 OB-fold nucleic acid binding domain CLM_3837 PF10298 WhiA N-terminal LAGLIDADG-like domain CLM_3837 PF02650 WhiA C-terminal HTH domain CLM_3837 PF14527 WhiA LAGLIDADG-like domain CLM_3838 PF01933 Uncharacterised protein family UPF0052 CLM_3839 PF03668 P-loop ATPase protein family CLM_3840 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLM_3840 PF01565 FAD binding domain CLM_3842 PF01541 GIY-YIG catalytic domain CLM_3842 PF12826 Helix-hairpin-helix motif CLM_3842 PF08459 UvrC Helix-hairpin-helix N-terminal CLM_3842 PF02151 UvrB/uvrC motif CLM_3843 PF04307 LexA-binding, inner membrane-associated putative hydrolase CLM_3845 PF00905 Penicillin binding protein transpeptidase domain CLM_3846 PF01098 Cell cycle protein CLM_3847 PF00498 FHA domain CLM_3847 PF12401 Protein of unknown function (DUF2662) CLM_3848 PF17760 UvrA interaction domain CLM_3848 PF17755 UvrA DNA-binding domain CLM_3849 PF04851 Type III restriction enzyme, res subunit CLM_3849 PF00271 Helicase conserved C-terminal domain CLM_3849 PF02151 UvrB/uvrC motif CLM_3849 PF12344 Ultra-violet resistance protein B CLM_3849 PF17757 UvrB interaction domain CLM_3850 PF17820 PDZ domain CLM_3850 PF02163 Peptidase family M50 CLM_3851 PF17820 PDZ domain CLM_3851 PF03572 Peptidase family S41 CLM_3851 PF01471 Putative peptidoglycan binding domain CLM_3852 PF18075 FtsX extracellular domain CLM_3852 PF02687 FtsX-like permease family CLM_3853 PF00005 ABC transporter CLM_3854 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLM_3854 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLM_3856 PF02779 Transketolase, pyrimidine binding domain CLM_3856 PF02780 Transketolase, C-terminal domain CLM_3857 PF00456 Transketolase, thiamine diphosphate binding domain CLM_3858 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLM_3859 PF01402 Ribbon-helix-helix protein, copG family CLM_3860 PF01168 Alanine racemase, N-terminal domain CLM_3860 PF00842 Alanine racemase, C-terminal domain CLM_3862 PF01256 Carbohydrate kinase CLM_3862 PF03853 YjeF-related protein N-terminus CLM_3863 PF01648 4'-phosphopantetheinyl transferase superfamily CLM_3867 PF03631 Virulence factor BrkB CLM_3869 PF00163 Ribosomal protein S4/S9 N-terminal domain CLM_3869 PF01479 S4 domain CLM_3870 PF00375 Sodium:dicarboxylate symporter family CLM_3872 PF06445 GyrI-like small molecule binding domain CLM_3872 PF13411 MerR HTH family regulatory protein CLM_3874 PF00080 Copper/zinc superoxide dismutase (SODC) CLM_3875 PF01380 SIS domain CLM_3877 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLM_3878 PF13419 Haloacid dehalogenase-like hydrolase CLM_3879 PF00106 short chain dehydrogenase CLM_3880 PF03829 PTS system glucitol/sorbitol-specific IIA component CLM_3881 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CLM_3881 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CLM_3882 PF03608 PTS system enzyme II sorbitol-specific factor CLM_3884 PF08240 Alcohol dehydrogenase GroES-like domain CLM_3884 PF00107 Zinc-binding dehydrogenase CLM_3885 PF13936 Helix-turn-helix domain CLM_3885 PF04198 Putative sugar-binding domain CLM_3886 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLM_3886 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLM_3886 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLM_3886 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLM_3889 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLM_3889 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLM_3889 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLM_3892 PF00871 Acetokinase family CLM_3893 PF01515 Phosphate acetyl/butaryl transferase CLM_3894 PF00871 Acetokinase family CLM_3897 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLM_3899 PF07486 Cell Wall Hydrolase CLM_3900 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM_3901 PF00085 Thioredoxin CLM_3902 PF01979 Amidohydrolase family CLM_3905 PF02896 PEP-utilising enzyme, TIM barrel domain CLM_3905 PF00391 PEP-utilising enzyme, mobile domain CLM_3905 PF05524 PEP-utilising enzyme, N-terminal CLM_3906 PF02954 Bacterial regulatory protein, Fis family CLM_3906 PF00989 PAS fold CLM_3906 PF00158 Sigma-54 interaction domain CLM_3909 PF05683 Fumarase C-terminus CLM_3909 PF05681 Fumarate hydratase (Fumerase) CLM_3910 PF01520 N-acetylmuramoyl-L-alanine amidase CLM_3911 PF02690 Na+/Pi-cotransporter CLM_3912 PF00380 Ribosomal protein S9/S16 CLM_3913 PF00572 Ribosomal protein L13 CLM_3914 PF01416 tRNA pseudouridine synthase CLM_3915 PF02361 Cobalt transport protein CLM_3916 PF00005 ABC transporter CLM_3917 PF00005 ABC transporter CLM_3918 PF01196 Ribosomal protein L17 CLM_3919 PF01000 RNA polymerase Rpb3/RpoA insert domain CLM_3919 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLM_3919 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLM_3920 PF00163 Ribosomal protein S4/S9 N-terminal domain CLM_3920 PF01479 S4 domain CLM_3921 PF00411 Ribosomal protein S11 CLM_3922 PF00416 Ribosomal protein S13/S18 CLM_3923 PF00444 Ribosomal protein L36 CLM_3924 PF01176 Translation initiation factor 1A / IF-1 CLM_3926 PF00557 Metallopeptidase family M24 CLM_3927 PF05191 Adenylate kinase, active site lid CLM_3928 PF00344 SecY translocase CLM_3929 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLM_3930 PF00327 Ribosomal protein L30p/L7e CLM_3931 PF00333 Ribosomal protein S5, N-terminal domain CLM_3931 PF03719 Ribosomal protein S5, C-terminal domain CLM_3932 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLM_3933 PF00347 Ribosomal protein L6 CLM_3934 PF00410 Ribosomal protein S8 CLM_3935 PF00253 Ribosomal protein S14p/S29e CLM_3936 PF00673 ribosomal L5P family C-terminus CLM_3936 PF00281 Ribosomal protein L5 CLM_3937 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLM_3937 PF00467 KOW motif CLM_3938 PF00238 Ribosomal protein L14p/L23e CLM_3939 PF00366 Ribosomal protein S17 CLM_3940 PF00831 Ribosomal L29 protein CLM_3941 PF00252 Ribosomal protein L16p/L10e CLM_3942 PF07650 KH domain CLM_3942 PF00189 Ribosomal protein S3, C-terminal domain CLM_3943 PF00237 Ribosomal protein L22p/L17e CLM_3944 PF00203 Ribosomal protein S19 CLM_3945 PF03947 Ribosomal Proteins L2, C-terminal domain CLM_3945 PF00181 Ribosomal Proteins L2, RNA binding domain CLM_3946 PF00276 Ribosomal protein L23 CLM_3947 PF00573 Ribosomal protein L4/L1 family CLM_3948 PF00297 Ribosomal protein L3 CLM_3949 PF00338 Ribosomal protein S10p/S20e CLM_3950 PF03143 Elongation factor Tu C-terminal domain CLM_3950 PF03144 Elongation factor Tu domain 2 CLM_3950 PF00009 Elongation factor Tu GTP binding domain CLM_3951 PF03144 Elongation factor Tu domain 2 CLM_3951 PF00679 Elongation factor G C-terminus CLM_3951 PF14492 Elongation Factor G, domain II CLM_3951 PF03764 Elongation factor G, domain IV CLM_3951 PF00009 Elongation factor Tu GTP binding domain CLM_3952 PF00177 Ribosomal protein S7p/S5e CLM_3953 PF00164 Ribosomal protein S12/S23 CLM_3954 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLM_3955 PF04997 RNA polymerase Rpb1, domain 1 CLM_3955 PF05000 RNA polymerase Rpb1, domain 4 CLM_3955 PF04998 RNA polymerase Rpb1, domain 5 CLM_3955 PF04983 RNA polymerase Rpb1, domain 3 CLM_3955 PF00623 RNA polymerase Rpb1, domain 2 CLM_3956 PF00562 RNA polymerase Rpb2, domain 6 CLM_3956 PF10385 RNA polymerase beta subunit external 1 domain CLM_3956 PF04560 RNA polymerase Rpb2, domain 7 CLM_3956 PF04563 RNA polymerase beta subunit CLM_3956 PF04561 RNA polymerase Rpb2, domain 2 CLM_3956 PF04565 RNA polymerase Rpb2, domain 3 CLM_3957 PF16320 Ribosomal protein L7/L12 dimerisation domain CLM_3957 PF00542 Ribosomal protein L7/L12 C-terminal domain CLM_3958 PF00466 Ribosomal protein L10 CLM_3959 PF00687 Ribosomal protein L1p/L10e family CLM_3960 PF03946 Ribosomal protein L11, N-terminal domain CLM_3960 PF00298 Ribosomal protein L11, RNA binding domain CLM_3961 PF00467 KOW motif CLM_3961 PF02357 Transcription termination factor nusG CLM_3963 PF00471 Ribosomal protein L33 CLM_3964 PF03144 Elongation factor Tu domain 2 CLM_3964 PF03143 Elongation factor Tu C-terminal domain CLM_3964 PF00009 Elongation factor Tu GTP binding domain CLM_3967 PF08281 Sigma-70, region 4 CLM_3967 PF04542 Sigma-70 region 2 CLM_3969 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLM_3969 PF00588 SpoU rRNA Methylase family CLM_3970 PF02511 Thymidylate synthase complementing protein CLM_3971 PF00636 Ribonuclease III domain CLM_3972 PF09190 DALR domain CLM_3972 PF01406 tRNA synthetases class I (C) catalytic domain CLM_3973 PF13291 ACT domain CLM_3973 PF00291 Pyridoxal-phosphate dependent enzyme CLM_3974 PF03129 Anticodon binding domain CLM_3974 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_3974 PF04073 Aminoacyl-tRNA editing domain CLM_3975 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLM_3978 PF10635 DisA bacterial checkpoint controller linker region CLM_3978 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLM_3979 PF18073 Rubredoxin metal binding domain CLM_3980 PF07724 AAA domain (Cdc48 subfamily) CLM_3980 PF17871 AAA lid domain CLM_3980 PF02861 Clp amino terminal domain, pathogenicity island component CLM_3980 PF10431 C-terminal, D2-small domain, of ClpB protein CLM_3980 PF00004 ATPase family associated with various cellular activities (AAA) CLM_3981 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CLM_3982 PF02151 UvrB/uvrC motif CLM_3983 PF05848 CtsR N-terminal HTH domain CLM_3983 PF17727 CtsR C-terminal dimerization domain CLM_3985 PF03764 Elongation factor G, domain IV CLM_3985 PF03144 Elongation factor Tu domain 2 CLM_3985 PF00679 Elongation factor G C-terminus CLM_3985 PF00009 Elongation factor Tu GTP binding domain CLM_3985 PF14492 Elongation Factor G, domain II CLM_4002 PF08245 Mur ligase middle domain CLM_4003 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM_4003 PF03129 Anticodon binding domain CLM_4004 PF00152 tRNA synthetases class II (D, K and N) CLM_4004 PF01336 OB-fold nucleic acid binding domain CLM_4005 PF01272 Transcription elongation factor, GreA/GreB, C-term CLM_4005 PF03449 Transcription elongation factor, N-terminal CLM_4007 PF01207 Dihydrouridine synthase (Dus) CLM_4008 PF03309 Type III pantothenate kinase CLM_4009 PF01268 Formate--tetrahydrofolate ligase CLM_4010 PF00004 ATPase family associated with various cellular activities (AAA) CLM_4010 PF17862 AAA+ lid domain CLM_4010 PF01434 Peptidase family M41 CLM_4012 PF11734 TilS substrate C-terminal domain CLM_4012 PF01171 PP-loop family CLM_4013 PF07228 Stage II sporulation protein E (SpoIIE) CLM_4021 PF00575 S1 RNA binding domain CLM_4025 PF01479 S4 domain CLM_4026 PF00216 Bacterial DNA-binding protein CLM_4027 PF03819 MazG nucleotide pyrophosphohydrolase domain CLM_4027 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM_4028 PF01943 Polysaccharide biosynthesis protein CLM_4028 PF14667 Polysaccharide biosynthesis C-terminal domain CLM_4029 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLM_4029 PF15714 Stage V sporulation protein T C-terminal, transcription factor CLM_4030 PF13145 PPIC-type PPIASE domain CLM_4031 PF02559 CarD-like/TRCF domain CLM_4031 PF00270 DEAD/DEAH box helicase CLM_4031 PF03461 TRCF domain CLM_4031 PF17757 UvrB interaction domain CLM_4031 PF00271 Helicase conserved C-terminal domain CLM_4032 PF01195 Peptidyl-tRNA hydrolase CLM_4033 PF13180 PDZ domain CLM_4034 PF16736 Single Cache-like CLM_4034 PF00989 PAS fold CLM_4034 PF00512 His Kinase A (phospho-acceptor) domain CLM_4034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM_4035 PF00486 Transcriptional regulatory protein, C terminal CLM_4035 PF00072 Response regulator receiver domain CLM_4036 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLM_4036 PF14572 Phosphoribosyl synthetase-associated domain CLM_4037 PF00483 Nucleotidyl transferase CLM_4037 PF00132 Bacterial transferase hexapeptide (six repeats) CLM_4038 PF04026 SpoVG CLM_4039 PF00156 Phosphoribosyl transferase domain CLM_4039 PF09182 Bacterial purine repressor, N-terminal CLM_4040 PF08245 Mur ligase middle domain CLM_4040 PF02875 Mur ligase family, glutamate ligase domain CLM_4040 PF01225 Mur ligase family, catalytic domain CLM_4044 PF13419 Haloacid dehalogenase-like hydrolase CLM_4046 PF04029 2-phosphosulpholactate phosphatase CLM_4047 PF04055 Radical SAM superfamily CLM_4047 PF16199 Radical_SAM C-terminal domain CLM_4051 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM_4051 PF00672 HAMP domain CLM_4051 PF02743 Cache domain CLM_4054 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLM_4055 PF01177 Asp/Glu/Hydantoin racemase CLM_4056 PF00120 Glutamine synthetase, catalytic domain CLM_4058 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLM_4059 PF00753 Metallo-beta-lactamase superfamily CLM_4061 PF07517 SecA DEAD-like domain CLM_4061 PF02810 SEC-C motif CLM_4061 PF07516 SecA Wing and Scaffold domain CLM_4061 PF01043 SecA preprotein cross-linking domain CLM_4062 PF02590 Predicted SPOUT methyltransferase CLM_4065 PF07690 Major Facilitator Superfamily CLM_4067 PF00440 Bacterial regulatory proteins, tetR family CLM_4067 PF16859 Tetracyclin repressor-like, C-terminal domain CLM_4068 PF12833 Helix-turn-helix domain CLM_4069 PF02810 SEC-C motif CLM_4069 PF00557 Metallopeptidase family M24 CLM_4070 PF00881 Nitroreductase family CLM_4071 PF11230 Protein of unknown function (DUF3029) CLM_4072 PF04055 Radical SAM superfamily CLM_4074 PF06968 Biotin and Thiamin Synthesis associated domain CLM_4074 PF04055 Radical SAM superfamily CLM_4076 PF01926 50S ribosome-binding GTPase CLM_4076 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLM_4078 PF00534 Glycosyl transferases group 1 CLM_4078 PF13439 Glycosyltransferase Family 4 CLM_4079 PF02811 PHP domain CLM_4082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_4082 PF03466 LysR substrate binding domain CLM_4083 PF00082 Subtilase family CLM_4084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM_4084 PF03466 LysR substrate binding domain CLM_4085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM_4086 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLM_4087 PF17848 Acetyl-coA carboxylase zinc finger domain CLM_4087 PF01039 Carboxyl transferase domain CLM_4088 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM_4088 PF00289 Biotin carboxylase, N-terminal domain CLM_4088 PF02785 Biotin carboxylase C-terminal domain CLM_4089 PF07977 FabA-like domain CLM_4090 PF00364 Biotin-requiring enzyme CLM_4091 PF02801 Beta-ketoacyl synthase, C-terminal domain CLM_4091 PF00109 Beta-ketoacyl synthase, N-terminal domain CLM_4093 PF00698 Acyl transferase domain CLM_4094 PF03060 Nitronate monooxygenase CLM_4095 PF00550 Phosphopantetheine attachment site CLM_4096 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM_4096 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM_4099 PF01476 LysM domain CLM_4099 PF01551 Peptidase family M23 CLM_4099 PF08525 Opacity-associated protein A N-terminal motif CLM_4101 PF01695 IstB-like ATP binding protein CLM_4116 PF03618 Kinase/pyrophosphorylase CLM_4121 PF00709 Adenylosuccinate synthetase CLM_4124 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLM_4124 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLM_4124 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLM_4124 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLM_4125 PF03796 DnaB-like helicase C terminal domain CLM_4125 PF00772 DnaB-like helicase N terminal domain CLM_4126 PF00004 ATPase family associated with various cellular activities (AAA) CLM_4126 PF05362 Lon protease (S16) C-terminal proteolytic domain CLM_4127 PF03948 Ribosomal protein L9, C-terminal domain CLM_4127 PF01281 Ribosomal protein L9, N-terminal domain CLM_4128 PF01368 DHH family CLM_4128 PF02272 DHHA1 domain CLM_4131 PF01084 Ribosomal protein S18 CLM_4132 PF00436 Single-strand binding protein family CLM_4133 PF01250 Ribosomal protein S6 CLM_4134 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLM_4136 PF00924 Mechanosensitive ion channel CLM_4138 PF00266 Aminotransferase class-V CLM_4139 PF01594 AI-2E family transporter CLM_4140 PF06866 Protein of unknown function (DUF1256) CLM_4143 PF02195 ParB-like nuclease domain CLM_4143 PF17762 HTH domain found in ParB protein CLM_4144 PF13614 AAA domain CLM_4145 PF17762 HTH domain found in ParB protein CLM_4145 PF02195 ParB-like nuclease domain CLM_4146 PF02527 rRNA small subunit methyltransferase G CLM_4147 PF13932 GidA associated domain CLM_4147 PF01134 Glucose inhibited division protein A CLM_4148 PF12631 MnmE helical domain CLM_4148 PF01926 50S ribosome-binding GTPase CLM_4148 PF10396 GTP-binding protein TrmE N-terminus CLM_4149 PF01424 R3H domain CLM_4149 PF14804 Jag N-terminus CLM_4150 PF02096 60Kd inner membrane protein CLM_4151 PF01809 Putative membrane protein insertion efficiency factor CLM_4152 PF00825 Ribonuclease P CLM_4153 PF00468 Ribosomal protein L34