CLM_0001 SM00382 ATPases associated with a variety of cellular activities CLM_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain CLM_0002 SM00480 DNA polymerase III beta subunit CLM_0006 SM00387 Histidine kinase-like ATPases CLM_0006 SM00433 TopoisomeraseII CLM_0007 SM00434 DNA Topoisomerase IV CLM_0032 SM00382 ATPases associated with a variety of cellular activities CLM_0037 SM00382 ATPases associated with a variety of cellular activities CLM_0039 SM00493 CLM_0039 CLM_0056 SM00986 Uracil DNA glycosylase superfamily CLM_0056 SM00987 UreE urease accessory protein, C-terminal domain CLM_0117 SM00986 Uracil DNA glycosylase superfamily CLM_0117 SM00987 UreE urease accessory protein, C-terminal domain CLM_0118 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_0122 SM01208 CLM_0122 CLM_0123 SM00493 CLM_0123 CLM_0124 SM00650 Ribosomal RNA adenine dimethylases CLM_0129 SM00382 ATPases associated with a variety of cellular activities CLM_0135 SM00267 diguanylate cyclase CLM_0143 SM00354 helix_turn _helix lactose operon repressor CLM_0148 SM01001 AIR carboxylase CLM_0149 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_0160 SM00257 Lysin motif CLM_0177 SM00357 Cold shock protein domain CLM_0177 SM00382 ATPases associated with a variety of cellular activities CLM_0177 SM00959 Rho termination factor, N-terminal domain CLM_0182 SM00937 CLM_0182 CLM_0186 SM00226 Low molecular weight phosphatase family CLM_0200 SM00382 ATPases associated with a variety of cellular activities CLM_0217 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLM_0217 SM00382 ATPases associated with a variety of cellular activities CLM_0221 SM00957 SecA DEAD-like domain CLM_0221 SM00958 SecA preprotein cross-linking domain CLM_0222 SM00937 CLM_0222 CLM_0224 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_0224 SM00732 Likely ribonuclease with RNase H fold. CLM_0230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLM_0231 SM00450 Rhodanese Homology Domain CLM_0233 SM00954 Region found in RelA / SpoT proteins CLM_0235 SM00450 Rhodanese Homology Domain CLM_0238 SM00271 DnaJ molecular chaperone homology domain CLM_0240 SM01118 CLM_0240 CLM_0248 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_0249 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLM_0251 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_0253 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_0253 SM00924 MgtE intracellular N domain CLM_0258 SM00563 Phosphate acyltransferases CLM_0259 SM00478 endonuclease III CLM_0259 SM00525 CLM_0259 CLM_0260 SM00919 Malic enzyme, NAD binding domain CLM_0260 SM01274 CLM_0260 CLM_0261 SM00852 Probable molybdopterin binding domain CLM_0265 SM01208 CLM_0265 CLM_0270 SM00382 ATPases associated with a variety of cellular activities CLM_0276 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLM_0280 SM01192 CLM_0280 CLM_0280 SM01193 CLM_0280 CLM_0282 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_0282 SM00357 Cold shock protein domain CLM_0282 SM00955 CLM_0282 CLM_0295 SM00448 cheY-homologous receiver domain CLM_0295 SM00862 Transcriptional regulatory protein, C terminal CLM_0296 SM00382 ATPases associated with a variety of cellular activities CLM_0298 SM00387 Histidine kinase-like ATPases CLM_0298 SM00388 His Kinase A (phosphoacceptor) domain CLM_0303 SM00849 Metallo-beta-lactamase superfamily CLM_0308 SM00479 CLM_0308 CLM_0323 SM00448 cheY-homologous receiver domain CLM_0323 SM00862 Transcriptional regulatory protein, C terminal CLM_0324 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0324 SM00387 Histidine kinase-like ATPases CLM_0324 SM00388 His Kinase A (phosphoacceptor) domain CLM_0331 SM00448 cheY-homologous receiver domain CLM_0331 SM00862 Transcriptional regulatory protein, C terminal CLM_0332 SM00387 Histidine kinase-like ATPases CLM_0333 SM00382 ATPases associated with a variety of cellular activities CLM_0340 SM00357 Cold shock protein domain CLM_0353 SM00448 cheY-homologous receiver domain CLM_0353 SM00862 Transcriptional regulatory protein, C terminal CLM_0354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0354 SM00387 Histidine kinase-like ATPases CLM_0354 SM00388 His Kinase A (phosphoacceptor) domain CLM_0358 SM00342 helix_turn_helix, arabinose operon control protein CLM_0362 SM00382 ATPases associated with a variety of cellular activities CLM_0367 SM00448 cheY-homologous receiver domain CLM_0367 SM00850 LytTr DNA-binding domain CLM_0374 SM00823 Phosphopantetheine attachment site CLM_0377 SM00342 helix_turn_helix, arabinose operon control protein CLM_0381 SM00382 ATPases associated with a variety of cellular activities CLM_0382 SM00382 ATPases associated with a variety of cellular activities CLM_0386 SM00448 cheY-homologous receiver domain CLM_0386 SM00862 Transcriptional regulatory protein, C terminal CLM_0387 SM00387 Histidine kinase-like ATPases CLM_0389 SM00382 ATPases associated with a variety of cellular activities CLM_0395 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_0399 SM00793 Accessory gene regulator B CLM_0401 SM00267 diguanylate cyclase CLM_0401 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_0404 SM00387 Histidine kinase-like ATPases CLM_0404 SM00388 His Kinase A (phosphoacceptor) domain CLM_0406 SM00793 Accessory gene regulator B CLM_0408 SM00387 Histidine kinase-like ATPases CLM_0408 SM00388 His Kinase A (phosphoacceptor) domain CLM_0410 SM00530 Helix-turn-helix XRE-family like proteins CLM_0418 SM00014 Acid phosphatase homologues CLM_0420 SM00448 cheY-homologous receiver domain CLM_0420 SM00862 Transcriptional regulatory protein, C terminal CLM_0421 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0421 SM00387 Histidine kinase-like ATPases CLM_0421 SM00388 His Kinase A (phosphoacceptor) domain CLM_0425 SM00052 Putative diguanylate phosphodiesterase CLM_0425 SM00267 diguanylate cyclase CLM_0425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0433 SM00448 cheY-homologous receiver domain CLM_0433 SM00862 Transcriptional regulatory protein, C terminal CLM_0434 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0434 SM00387 Histidine kinase-like ATPases CLM_0434 SM00388 His Kinase A (phosphoacceptor) domain CLM_0438 SM00900 CLM_0438 CLM_0451 SM00460 Transglutaminase/protease-like homologues CLM_0457 SM00382 ATPases associated with a variety of cellular activities CLM_0467 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_0469 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0469 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0470 SM00382 ATPases associated with a variety of cellular activities CLM_0474 SM00028 Tetratricopeptide repeats CLM_0474 SM00530 Helix-turn-helix XRE-family like proteins CLM_0475 SM00028 Tetratricopeptide repeats CLM_0475 SM00530 Helix-turn-helix XRE-family like proteins CLM_0480 SM00382 ATPases associated with a variety of cellular activities CLM_0480 SM01086 C-terminal, D2-small domain, of ClpB protein CLM_0494 SM00849 Metallo-beta-lactamase superfamily CLM_0495 SM00563 Phosphate acyltransferases CLM_0498 SM01329 CLM_0498 CLM_0499 SM00382 ATPases associated with a variety of cellular activities CLM_0508 SM00028 Tetratricopeptide repeats CLM_0519 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0522 SM00849 Metallo-beta-lactamase superfamily CLM_0528 SM00062 Bacterial periplasmic substrate-binding proteins CLM_0528 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CLM_0530 SM00052 Putative diguanylate phosphodiesterase CLM_0535 SM01209 CLM_0535 CLM_0539 SM00382 ATPases associated with a variety of cellular activities CLM_0540 SM00382 ATPases associated with a variety of cellular activities CLM_0544 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_0552 SM00530 Helix-turn-helix XRE-family like proteins CLM_0560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLM_0569 SM00670 Large family of predicted nucleotide-binding domains CLM_0578 SM00382 ATPases associated with a variety of cellular activities CLM_0584 SM00421 helix_turn_helix, Lux Regulon CLM_0584 SM00448 cheY-homologous receiver domain CLM_0585 SM00382 ATPases associated with a variety of cellular activities CLM_0595 SM00448 cheY-homologous receiver domain CLM_0596 SM00287 Bacterial SH3 domain homologues CLM_0598 SM00448 cheY-homologous receiver domain CLM_0599 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_0600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0601 SM00448 cheY-homologous receiver domain CLM_0603 SM00488 CLM_0603 CLM_0603 SM00491 CLM_0603 CLM_0605 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_0606 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CLM_0606 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CLM_0614 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_0619 SM00382 ATPases associated with a variety of cellular activities CLM_0620 SM00448 cheY-homologous receiver domain CLM_0620 SM00862 Transcriptional regulatory protein, C terminal CLM_0621 SM00387 Histidine kinase-like ATPases CLM_0621 SM00388 His Kinase A (phosphoacceptor) domain CLM_0622 SM00382 ATPases associated with a variety of cellular activities CLM_0627 SM00344 helix_turn_helix ASNC type CLM_0632 SM00849 Metallo-beta-lactamase superfamily CLM_0633 SM00831 Cation transporter/ATPase, N-terminus CLM_0641 SM00244 prohibitin homologues CLM_0643 SM01011 Aminopeptidase P, N-terminal domain CLM_0645 SM00530 Helix-turn-helix XRE-family like proteins CLM_0654 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0655 SM00382 ATPases associated with a variety of cellular activities CLM_0661 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_0662 SM00382 ATPases associated with a variety of cellular activities CLM_0665 SM00382 ATPases associated with a variety of cellular activities CLM_0668 SM00342 helix_turn_helix, arabinose operon control protein CLM_0683 SM00530 Helix-turn-helix XRE-family like proteins CLM_0686 SM00448 cheY-homologous receiver domain CLM_0686 SM00850 LytTr DNA-binding domain CLM_0694 SM00382 ATPases associated with a variety of cellular activities CLM_0698 SM00382 ATPases associated with a variety of cellular activities CLM_0704 SM00382 ATPases associated with a variety of cellular activities CLM_0707 SM00850 LytTr DNA-binding domain CLM_0709 SM00342 helix_turn_helix, arabinose operon control protein CLM_0709 SM00871 Bacterial transcription activator, effector binding domain CLM_0712 SM00530 Helix-turn-helix XRE-family like proteins CLM_0714 SM00448 cheY-homologous receiver domain CLM_0714 SM00862 Transcriptional regulatory protein, C terminal CLM_0715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0715 SM00387 Histidine kinase-like ATPases CLM_0715 SM00388 His Kinase A (phosphoacceptor) domain CLM_0718 SM00448 cheY-homologous receiver domain CLM_0718 SM00862 Transcriptional regulatory protein, C terminal CLM_0719 SM00387 Histidine kinase-like ATPases CLM_0719 SM00388 His Kinase A (phosphoacceptor) domain CLM_0721 SM00448 cheY-homologous receiver domain CLM_0722 SM00387 Histidine kinase-like ATPases CLM_0725 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLM_0726 SM00382 ATPases associated with a variety of cellular activities CLM_0727 SM01059 Chloramphenicol acetyltransferase CLM_0731 SM00342 helix_turn_helix, arabinose operon control protein CLM_0732 SM00530 Helix-turn-helix XRE-family like proteins CLM_0734 SM00850 LytTr DNA-binding domain CLM_0735 SM00382 ATPases associated with a variety of cellular activities CLM_0739 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLM_0739 SM00534 ATPase domain of DNA mismatch repair MUTS family CLM_0747 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_0749 SM00487 DEAD-like helicases superfamily CLM_0749 SM00490 helicase superfamily c-terminal domain CLM_0751 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_0767 SM01061 CAT RNA binding domain CLM_0769 SM00481 DNA polymerase alpha chain like domain CLM_0771 SM00100 Cyclic nucleotide-monophosphate binding domain CLM_0771 SM00419 helix_turn_helix, cAMP Regulatory protein CLM_0772 SM00849 Metallo-beta-lactamase superfamily CLM_0780 SM00849 Metallo-beta-lactamase superfamily CLM_0782 SM00382 ATPases associated with a variety of cellular activities CLM_0795 SM00487 DEAD-like helicases superfamily CLM_0797 SM00871 Bacterial transcription activator, effector binding domain CLM_0802 SM00342 helix_turn_helix, arabinose operon control protein CLM_0806 SM00382 ATPases associated with a variety of cellular activities CLM_0810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_0825 SM00448 cheY-homologous receiver domain CLM_0825 SM00862 Transcriptional regulatory protein, C terminal CLM_0826 SM00387 Histidine kinase-like ATPases CLM_0826 SM00388 His Kinase A (phosphoacceptor) domain CLM_0827 SM00382 ATPases associated with a variety of cellular activities CLM_0829 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_0834 SM00422 helix_turn_helix, mercury resistance CLM_0835 SM00382 ATPases associated with a variety of cellular activities CLM_0838 SM00530 Helix-turn-helix XRE-family like proteins CLM_0842 SM00342 helix_turn_helix, arabinose operon control protein CLM_0846 SM00530 Helix-turn-helix XRE-family like proteins CLM_0849 SM00422 helix_turn_helix, mercury resistance CLM_0851 SM00382 ATPases associated with a variety of cellular activities CLM_0854 SM00342 helix_turn_helix, arabinose operon control protein CLM_0854 SM00871 Bacterial transcription activator, effector binding domain CLM_0857 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0860 SM00382 ATPases associated with a variety of cellular activities CLM_0871 SM00636 CLM_0871 CLM_0874 SM00342 helix_turn_helix, arabinose operon control protein CLM_0874 SM00871 Bacterial transcription activator, effector binding domain CLM_0879 SM00530 Helix-turn-helix XRE-family like proteins CLM_0880 SM00530 Helix-turn-helix XRE-family like proteins CLM_0889 SM00226 Low molecular weight phosphatase family CLM_0899 SM00641 Glycosyl hydrolases family 25 CLM_0903 SM00226 Low molecular weight phosphatase family CLM_0905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLM_0907 SM00382 ATPases associated with a variety of cellular activities CLM_0908 SM00226 Low molecular weight phosphatase family CLM_0915 SM00382 ATPases associated with a variety of cellular activities CLM_0924 SM00382 ATPases associated with a variety of cellular activities CLM_0926 SM00448 cheY-homologous receiver domain CLM_0926 SM00862 Transcriptional regulatory protein, C terminal CLM_0927 SM00382 ATPases associated with a variety of cellular activities CLM_0929 SM00342 helix_turn_helix, arabinose operon control protein CLM_0929 SM00871 Bacterial transcription activator, effector binding domain CLM_0930 SM00387 Histidine kinase-like ATPases CLM_0930 SM00388 His Kinase A (phosphoacceptor) domain CLM_0933 SM00382 ATPases associated with a variety of cellular activities CLM_0936 SM00448 cheY-homologous receiver domain CLM_0936 SM00862 Transcriptional regulatory protein, C terminal CLM_0937 SM00387 Histidine kinase-like ATPases CLM_0937 SM00388 His Kinase A (phosphoacceptor) domain CLM_0943 SM00450 Rhodanese Homology Domain CLM_0948 SM00530 Helix-turn-helix XRE-family like proteins CLM_0956 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_0957 SM00899 CLM_0957 CLM_0961 SM00855 Phosphoglycerate mutase family CLM_0962 SM01208 CLM_0962 CLM_0975 SM00422 helix_turn_helix, mercury resistance CLM_0981 SM00903 Flavin reductase like domain CLM_0984 SM00382 ATPases associated with a variety of cellular activities CLM_0986 SM00530 Helix-turn-helix XRE-family like proteins CLM_0994 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLM_0995 SM00422 helix_turn_helix, mercury resistance CLM_1003 SM00835 Cupin CLM_1011 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_1017 SM00342 helix_turn_helix, arabinose operon control protein CLM_1025 SM00530 Helix-turn-helix XRE-family like proteins CLM_1029 SM00342 helix_turn_helix, arabinose operon control protein CLM_1048 SM00382 ATPases associated with a variety of cellular activities CLM_1049 SM00448 cheY-homologous receiver domain CLM_1049 SM00862 Transcriptional regulatory protein, C terminal CLM_1050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_1050 SM00387 Histidine kinase-like ATPases CLM_1050 SM00388 His Kinase A (phosphoacceptor) domain CLM_1058 SM00422 helix_turn_helix, mercury resistance CLM_1071 SM01004 Delta-aminolevulinic acid dehydratase CLM_1077 SM00849 Metallo-beta-lactamase superfamily CLM_1078 SM00382 ATPases associated with a variety of cellular activities CLM_1106 SM00100 Cyclic nucleotide-monophosphate binding domain CLM_1106 SM00419 helix_turn_helix, cAMP Regulatory protein CLM_1111 SM00852 Probable molybdopterin binding domain CLM_1114 SM00382 ATPases associated with a variety of cellular activities CLM_1116 SM00448 cheY-homologous receiver domain CLM_1116 SM00862 Transcriptional regulatory protein, C terminal CLM_1117 SM00387 Histidine kinase-like ATPases CLM_1117 SM00388 His Kinase A (phosphoacceptor) domain CLM_1118 SM00382 ATPases associated with a variety of cellular activities CLM_1131 SM01120 CLM_1131 CLM_1133 SM00342 helix_turn_helix, arabinose operon control protein CLM_1150 SM00341 Helicase and RNase D C-terminal CLM_1150 SM00487 DEAD-like helicases superfamily CLM_1150 SM00490 helicase superfamily c-terminal domain CLM_1150 SM00956 CLM_1150 CLM_1153 SM00448 cheY-homologous receiver domain CLM_1158 SM00382 ATPases associated with a variety of cellular activities CLM_1162 SM00893 Electron transfer flavoprotein domain CLM_1163 SM00893 Electron transfer flavoprotein domain CLM_1167 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_1171 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_1172 SM00422 helix_turn_helix, mercury resistance CLM_1172 SM00871 Bacterial transcription activator, effector binding domain CLM_1173 SM00873 B3/4 domain CLM_1184 SM00899 CLM_1184 CLM_1185 SM00899 CLM_1185 CLM_1191 SM00448 cheY-homologous receiver domain CLM_1191 SM00862 Transcriptional regulatory protein, C terminal CLM_1192 SM00387 Histidine kinase-like ATPases CLM_1192 SM00388 His Kinase A (phosphoacceptor) domain CLM_1197 SM00448 cheY-homologous receiver domain CLM_1197 SM00862 Transcriptional regulatory protein, C terminal CLM_1198 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_1198 SM00387 Histidine kinase-like ATPases CLM_1198 SM00388 His Kinase A (phosphoacceptor) domain CLM_1200 SM00342 helix_turn_helix, arabinose operon control protein CLM_1203 SM00382 ATPases associated with a variety of cellular activities CLM_1205 SM00342 helix_turn_helix, arabinose operon control protein CLM_1206 SM00382 ATPases associated with a variety of cellular activities CLM_1207 SM00382 ATPases associated with a variety of cellular activities CLM_1209 SM00448 cheY-homologous receiver domain CLM_1209 SM00850 LytTr DNA-binding domain CLM_1214 SM00060 Fibronectin type 3 domain CLM_1214 SM00636 CLM_1214 CLM_1223 SM00287 Bacterial SH3 domain homologues CLM_1224 SM00382 ATPases associated with a variety of cellular activities CLM_1232 SM00836 DALR anticodon binding domain CLM_1232 SM01016 Arginyl tRNA synthetase N terminal dom CLM_1234 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_1237 SM00899 CLM_1237 CLM_1240 SM00495 Chitin-binding domain type 3 CLM_1243 SM00382 ATPases associated with a variety of cellular activities CLM_1243 SM00930 CLM_1243 CLM_1249 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_1249 SM00895 CLM_1249 CLM_1253 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLM_1254 SM00849 Metallo-beta-lactamase superfamily CLM_1254 SM01027 Beta-Casp domain CLM_1256 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_1260 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_1268 SM00382 ATPases associated with a variety of cellular activities CLM_1274 SM01266 CLM_1274 CLM_1277 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_1278 SM00387 Histidine kinase-like ATPases CLM_1278 SM00388 His Kinase A (phosphoacceptor) domain CLM_1281 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_1281 SM00924 MgtE intracellular N domain CLM_1285 SM00849 Metallo-beta-lactamase superfamily CLM_1288 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_1291 SM00450 Rhodanese Homology Domain CLM_1294 SM00028 Tetratricopeptide repeats CLM_1297 SM00450 Rhodanese Homology Domain CLM_1307 SM00382 ATPases associated with a variety of cellular activities CLM_1309 SM01324 CLM_1309 CLM_1310 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_1315 SM00382 ATPases associated with a variety of cellular activities CLM_1332 SM00062 Bacterial periplasmic substrate-binding proteins CLM_1338 SM00448 cheY-homologous receiver domain CLM_1338 SM00850 LytTr DNA-binding domain CLM_1341 SM00382 ATPases associated with a variety of cellular activities CLM_1345 SM00890 Domain of unknown function CLM_1351 SM00342 helix_turn_helix, arabinose operon control protein CLM_1356 SM01065 Starch binding domain CLM_1358 SM00363 S4 RNA-binding domain CLM_1359 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_1360 SM00382 ATPases associated with a variety of cellular activities CLM_1367 SM00257 Lysin motif CLM_1367 SM00287 Bacterial SH3 domain homologues CLM_1367 SM00636 CLM_1367 CLM_1368 SM00091 PAS domain CLM_1368 SM00267 diguanylate cyclase CLM_1380 SM00382 ATPases associated with a variety of cellular activities CLM_1395 SM00530 Helix-turn-helix XRE-family like proteins CLM_1400 SM00382 ATPases associated with a variety of cellular activities CLM_1406 SM00530 Helix-turn-helix XRE-family like proteins CLM_1429 SM01007 Class II Aldolase and Adducin N-terminal domain CLM_1430 SM00420 helix_turn_helix, Deoxyribose operon repressor CLM_1430 SM01134 CLM_1430 CLM_1438 SM00914 CLM_1438 CLM_1443 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. CLM_1444 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM_1445 SM01092 CO dehydrogenase flavoprotein C-terminal domain CLM_1448 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLM_1448 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLM_1448 SM00493 CLM_1448 CLM_1453 SM00849 Metallo-beta-lactamase superfamily CLM_1455 SM00267 diguanylate cyclase CLM_1466 SM00382 ATPases associated with a variety of cellular activities CLM_1469 SM00448 cheY-homologous receiver domain CLM_1469 SM00862 Transcriptional regulatory protein, C terminal CLM_1470 SM00387 Histidine kinase-like ATPases CLM_1470 SM00388 His Kinase A (phosphoacceptor) domain CLM_1483 SM00646 CLM_1483 CLM_1495 SM00479 CLM_1495 CLM_1497 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_1498 SM00257 Lysin motif CLM_1512 SM00100 Cyclic nucleotide-monophosphate binding domain CLM_1512 SM00419 helix_turn_helix, cAMP Regulatory protein CLM_1516 SM00382 ATPases associated with a variety of cellular activities CLM_1529 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1529 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_1533 SM00382 ATPases associated with a variety of cellular activities CLM_1534 SM00382 ATPases associated with a variety of cellular activities CLM_1537 SM00382 ATPases associated with a variety of cellular activities CLM_1540 SM00490 helicase superfamily c-terminal domain CLM_1541 SM00267 diguanylate cyclase CLM_1544 SM00382 ATPases associated with a variety of cellular activities CLM_1547 SM00257 Lysin motif CLM_1547 SM00631 CLM_1547 CLM_1553 SM00421 helix_turn_helix, Lux Regulon CLM_1553 SM00448 cheY-homologous receiver domain CLM_1554 SM00382 ATPases associated with a variety of cellular activities CLM_1561 SM00357 Cold shock protein domain CLM_1563 SM00028 Tetratricopeptide repeats CLM_1566 SM00382 ATPases associated with a variety of cellular activities CLM_1569 SM00448 cheY-homologous receiver domain CLM_1569 SM00862 Transcriptional regulatory protein, C terminal CLM_1570 SM00387 Histidine kinase-like ATPases CLM_1571 SM00382 ATPases associated with a variety of cellular activities CLM_1577 SM00062 Bacterial periplasmic substrate-binding proteins CLM_1579 SM00382 ATPases associated with a variety of cellular activities CLM_1588 SM00062 Bacterial periplasmic substrate-binding proteins CLM_1593 SM00842 Cell division protein FtsA CLM_1595 SM00646 CLM_1595 CLM_1596 SM00363 S4 RNA-binding domain CLM_1615 SM00530 Helix-turn-helix XRE-family like proteins CLM_1616 SM00530 Helix-turn-helix XRE-family like proteins CLM_1618 SM00530 Helix-turn-helix XRE-family like proteins CLM_1682 SM00646 CLM_1682 CLM_1693 SM00740 CLM_1693 CLM_1713 SM00363 S4 RNA-binding domain CLM_1719 SM00981 CLM_1719 CLM_1720 SM00947 Carbonic anhydrase CLM_1723 SM00382 ATPases associated with a variety of cellular activities CLM_1732 SM01018 B12 binding domain CLM_1735 SM00382 ATPases associated with a variety of cellular activities CLM_1735 SM00930 CLM_1735 CLM_1738 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. CLM_1742 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLM_1742 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLM_1742 SM00493 CLM_1742 CLM_1743 SM00534 ATPase domain of DNA mismatch repair MUTS family CLM_1746 SM00382 ATPases associated with a variety of cellular activities CLM_1750 SM00382 ATPases associated with a variety of cellular activities CLM_1755 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_1755 SM00895 CLM_1755 CLM_1759 SM00091 PAS domain CLM_1759 SM00267 diguanylate cyclase CLM_1759 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_1761 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1761 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_1762 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_1767 SM00342 helix_turn_helix, arabinose operon control protein CLM_1770 SM00530 Helix-turn-helix XRE-family like proteins CLM_1775 SM00529 Helix-turn-helix diphteria tox regulatory element CLM_1780 SM00831 Cation transporter/ATPase, N-terminus CLM_1788 SM00421 helix_turn_helix, Lux Regulon CLM_1790 SM00871 Bacterial transcription activator, effector binding domain CLM_1800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1804 SM01133 CLM_1804 CLM_1821 SM00450 Rhodanese Homology Domain CLM_1823 SM00382 ATPases associated with a variety of cellular activities CLM_1826 SM00448 cheY-homologous receiver domain CLM_1826 SM00862 Transcriptional regulatory protein, C terminal CLM_1827 SM00387 Histidine kinase-like ATPases CLM_1827 SM00388 His Kinase A (phosphoacceptor) domain CLM_1833 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_1838 SM00487 DEAD-like helicases superfamily CLM_1838 SM00490 helicase superfamily c-terminal domain CLM_1839 SM00954 Region found in RelA / SpoT proteins CLM_1841 SM00342 helix_turn_helix, arabinose operon control protein CLM_1842 SM00382 ATPases associated with a variety of cellular activities CLM_1843 SM00382 ATPases associated with a variety of cellular activities CLM_1844 SM00354 helix_turn _helix lactose operon repressor CLM_1846 SM00642 Alpha-amylase domain CLM_1853 SM00387 Histidine kinase-like ATPases CLM_1853 SM00388 His Kinase A (phosphoacceptor) domain CLM_1854 SM00448 cheY-homologous receiver domain CLM_1854 SM00862 Transcriptional regulatory protein, C terminal CLM_1858 SM00420 helix_turn_helix, Deoxyribose operon repressor CLM_1858 SM01134 CLM_1858 CLM_1861 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CLM_1865 SM01018 B12 binding domain CLM_1869 SM00382 ATPases associated with a variety of cellular activities CLM_1872 SM00861 Transketolase, pyrimidine binding domain CLM_1877 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_1877 SM00382 ATPases associated with a variety of cellular activities CLM_1883 SM00091 PAS domain CLM_1883 SM00382 ATPases associated with a variety of cellular activities CLM_1887 SM00091 PAS domain CLM_1887 SM00382 ATPases associated with a variety of cellular activities CLM_1889 SM00635 Bacterial Ig-like domain 2 CLM_1900 SM01005 Alanine racemase, C-terminal domain CLM_1901 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1908 SM00487 DEAD-like helicases superfamily CLM_1908 SM00490 helicase superfamily c-terminal domain CLM_1915 SM00382 ATPases associated with a variety of cellular activities CLM_1916 SM00479 CLM_1916 CLM_1930 SM00257 Lysin motif CLM_1932 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1933 SM00382 ATPases associated with a variety of cellular activities CLM_1935 SM00260 Two component signalling adaptor domain CLM_1935 SM00448 cheY-homologous receiver domain CLM_1936 SM00487 DEAD-like helicases superfamily CLM_1936 SM00490 helicase superfamily c-terminal domain CLM_1937 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_1938 SM00487 DEAD-like helicases superfamily CLM_1938 SM00490 helicase superfamily c-terminal domain CLM_1940 SM00365 Leucine-rich repeat, SDS22-like subfamily CLM_1940 SM00369 Leucine-rich repeats, typical (most populated) subfamily CLM_1941 SM00047 Lysozyme subfamily 2 CLM_1943 SM00448 cheY-homologous receiver domain CLM_1956 SM00853 MutL C terminal dimerisation domain CLM_1956 SM01340 CLM_1956 CLM_1957 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLM_1957 SM00534 ATPase domain of DNA mismatch repair MUTS family CLM_1958 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_1964 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_1968 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLM_1970 SM00363 S4 RNA-binding domain CLM_1975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_1975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_1983 SM00450 Rhodanese Homology Domain CLM_1987 SM00091 PAS domain CLM_1988 SM00331 Sigma factor PP2C-like phosphatases CLM_1989 SM00091 PAS domain CLM_1995 SM01117 CLM_1995 CLM_2001 SM00851 MGS-like domain CLM_2001 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLM_2002 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CLM_2006 SM00382 ATPases associated with a variety of cellular activities CLM_2007 SM00902 Iron hydrogenase small subunit CLM_2007 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLM_2008 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLM_2013 SM00936 Penicillin-binding protein 5, C-terminal domain CLM_2020 SM00936 Penicillin-binding protein 5, C-terminal domain CLM_2024 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CLM_2036 SM00287 Bacterial SH3 domain homologues CLM_2036 SM00646 CLM_2036 CLM_2079 SM00530 Helix-turn-helix XRE-family like proteins CLM_2088 SM00448 cheY-homologous receiver domain CLM_2089 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLM_2097 SM00363 S4 RNA-binding domain CLM_2098 SM00861 Transketolase, pyrimidine binding domain CLM_2114 SM00841 Elongation factor P, C-terminal CLM_2114 SM01185 CLM_2114 CLM_2136 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_2136 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2139 SM00448 cheY-homologous receiver domain CLM_2139 SM00862 Transcriptional regulatory protein, C terminal CLM_2140 SM00387 Histidine kinase-like ATPases CLM_2140 SM00388 His Kinase A (phosphoacceptor) domain CLM_2142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2142 SM00387 Histidine kinase-like ATPases CLM_2142 SM00388 His Kinase A (phosphoacceptor) domain CLM_2143 SM00448 cheY-homologous receiver domain CLM_2143 SM00862 Transcriptional regulatory protein, C terminal CLM_2146 SM00382 ATPases associated with a variety of cellular activities CLM_2148 SM00382 ATPases associated with a variety of cellular activities CLM_2149 SM00382 ATPases associated with a variety of cellular activities CLM_2150 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_2153 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLM_2154 SM00382 ATPases associated with a variety of cellular activities CLM_2157 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_2158 SM00852 Probable molybdopterin binding domain CLM_2159 SM00852 Probable molybdopterin binding domain CLM_2160 SM00852 Probable molybdopterin binding domain CLM_2161 SM00382 ATPases associated with a variety of cellular activities CLM_2167 SM00382 ATPases associated with a variety of cellular activities CLM_2170 SM00382 ATPases associated with a variety of cellular activities CLM_2171 SM00382 ATPases associated with a variety of cellular activities CLM_2172 SM00422 helix_turn_helix, mercury resistance CLM_2175 SM00365 Leucine-rich repeat, SDS22-like subfamily CLM_2176 SM00495 Chitin-binding domain type 3 CLM_2177 SM00382 ATPases associated with a variety of cellular activities CLM_2183 SM00365 Leucine-rich repeat, SDS22-like subfamily CLM_2185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2185 SM00387 Histidine kinase-like ATPases CLM_2185 SM00388 His Kinase A (phosphoacceptor) domain CLM_2186 SM00448 cheY-homologous receiver domain CLM_2186 SM00862 Transcriptional regulatory protein, C terminal CLM_2189 SM00382 ATPases associated with a variety of cellular activities CLM_2200 SM00028 Tetratricopeptide repeats CLM_2203 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLM_2203 SM00534 ATPase domain of DNA mismatch repair MUTS family CLM_2205 SM00642 Alpha-amylase domain CLM_2206 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_2206 SM00866 CLM_2206 CLM_2214 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_2217 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_2217 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2225 SM00267 diguanylate cyclase CLM_2227 SM00382 ATPases associated with a variety of cellular activities CLM_2228 SM00487 DEAD-like helicases superfamily CLM_2228 SM00490 helicase superfamily c-terminal domain CLM_2230 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_2233 SM00382 ATPases associated with a variety of cellular activities CLM_2235 SM00062 Bacterial periplasmic substrate-binding proteins CLM_2238 SM01059 Chloramphenicol acetyltransferase CLM_2249 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_2254 SM00327 von Willebrand factor (vWF) type A domain CLM_2280 SM00966 SpoVT / AbrB like domain CLM_2281 SM00525 CLM_2281 CLM_2289 SM00646 CLM_2289 CLM_2294 SM00487 DEAD-like helicases superfamily CLM_2298 SM00487 DEAD-like helicases superfamily CLM_2298 SM00490 helicase superfamily c-terminal domain CLM_2301 SM00857 Resolvase, N terminal domain CLM_2310 SM00838 Elongation factor G C-terminus CLM_2310 SM00889 Elongation factor G, domain IV CLM_2311 SM00495 Chitin-binding domain type 3 CLM_2311 SM01276 CLM_2311 CLM_2314 SM00877 CLM_2314 CLM_2317 SM00877 CLM_2317 CLM_2320 SM00877 CLM_2320 CLM_2321 SM00842 Cell division protein FtsA CLM_2324 SM00877 CLM_2324 CLM_2328 SM00877 CLM_2328 CLM_2329 SM00877 CLM_2329 CLM_2332 SM00422 helix_turn_helix, mercury resistance CLM_2336 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_2336 SM00895 CLM_2336 CLM_2337 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_2346 SM00387 Histidine kinase-like ATPases CLM_2347 SM00448 cheY-homologous receiver domain CLM_2347 SM00862 Transcriptional regulatory protein, C terminal CLM_2350 SM00382 ATPases associated with a variety of cellular activities CLM_2353 SM00530 Helix-turn-helix XRE-family like proteins CLM_2359 SM00382 ATPases associated with a variety of cellular activities CLM_2369 SM01266 CLM_2369 CLM_2374 SM00342 helix_turn_helix, arabinose operon control protein CLM_2374 SM00871 Bacterial transcription activator, effector binding domain CLM_2377 SM00422 helix_turn_helix, mercury resistance CLM_2383 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_2385 SM00530 Helix-turn-helix XRE-family like proteins CLM_2392 SM00220 Serine/Threonine protein kinases, catalytic domain CLM_2395 SM00893 Electron transfer flavoprotein domain CLM_2396 SM00893 Electron transfer flavoprotein domain CLM_2404 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_2411 SM00420 helix_turn_helix, Deoxyribose operon repressor CLM_2411 SM01134 CLM_2411 CLM_2419 SM01301 CLM_2419 CLM_2420 SM00829 Enoylreductase CLM_2425 SM00382 ATPases associated with a variety of cellular activities CLM_2445 SM00382 ATPases associated with a variety of cellular activities CLM_2447 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_2452 SM00422 helix_turn_helix, mercury resistance CLM_2452 SM00871 Bacterial transcription activator, effector binding domain CLM_2454 SM00506 Appr-1"-p processing enzyme CLM_2457 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_2465 SM00849 Metallo-beta-lactamase superfamily CLM_2468 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_2468 SM00876 Biotin and Thiamin Synthesis associated domain CLM_2486 SM00530 Helix-turn-helix XRE-family like proteins CLM_2493 SM00530 Helix-turn-helix XRE-family like proteins CLM_2498 SM00287 Bacterial SH3 domain homologues CLM_2498 SM00646 CLM_2498 CLM_2533 SM00635 Bacterial Ig-like domain 2 CLM_2558 SM00966 SpoVT / AbrB like domain CLM_2560 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains CLM_2562 SM00382 ATPases associated with a variety of cellular activities CLM_2574 SM00530 Helix-turn-helix XRE-family like proteins CLM_2575 SM00530 Helix-turn-helix XRE-family like proteins CLM_2577 SM00974 CLM_2577 CLM_2578 SM00857 Resolvase, N terminal domain CLM_2585 SM00382 ATPases associated with a variety of cellular activities CLM_2586 SM00382 ATPases associated with a variety of cellular activities CLM_2587 SM00342 helix_turn_helix, arabinose operon control protein CLM_2591 SM00382 ATPases associated with a variety of cellular activities CLM_2592 SM00387 Histidine kinase-like ATPases CLM_2592 SM00388 His Kinase A (phosphoacceptor) domain CLM_2593 SM00448 cheY-homologous receiver domain CLM_2593 SM00862 Transcriptional regulatory protein, C terminal CLM_2594 SM00479 CLM_2594 CLM_2595 SM00886 Stress responsive A/B Barrel Domain CLM_2598 SM00530 Helix-turn-helix XRE-family like proteins CLM_2622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2622 SM00387 Histidine kinase-like ATPases CLM_2622 SM00388 His Kinase A (phosphoacceptor) domain CLM_2623 SM00448 cheY-homologous receiver domain CLM_2623 SM00862 Transcriptional regulatory protein, C terminal CLM_2628 SM00530 Helix-turn-helix XRE-family like proteins CLM_2631 SM00287 Bacterial SH3 domain homologues CLM_2631 SM00646 CLM_2631 CLM_2645 SM00257 Lysin motif CLM_2667 SM00487 DEAD-like helicases superfamily CLM_2673 SM00482 DNA polymerase A domain CLM_2684 SM00530 Helix-turn-helix XRE-family like proteins CLM_2685 SM00530 Helix-turn-helix XRE-family like proteins CLM_2686 SM00857 Resolvase, N terminal domain CLM_2688 SM00998 Adenylosuccinate lyase C-terminus CLM_2696 SM00322 K homology RNA-binding domain CLM_2696 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_2697 SM00382 ATPases associated with a variety of cellular activities CLM_2699 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_2700 SM00382 ATPases associated with a variety of cellular activities CLM_2700 SM00843 CLM_2700 CLM_2705 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_2705 SM00322 K homology RNA-binding domain CLM_2706 SM01387 CLM_2706 CLM_2707 SM00904 Riboflavin kinase CLM_2714 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_2714 SM00322 K homology RNA-binding domain CLM_2716 SM00479 CLM_2716 CLM_2716 SM00481 DNA polymerase alpha chain like domain CLM_2718 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLM_2730 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLM_2730 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLM_2730 SM00493 CLM_2730 CLM_2742 SM00382 ATPases associated with a variety of cellular activities CLM_2742 SM00962 SRP54-type protein, GTPase domain CLM_2742 SM00963 SRP54-type protein, helical bundle domain CLM_2744 SM00382 ATPases associated with a variety of cellular activities CLM_2744 SM00962 SRP54-type protein, GTPase domain CLM_2744 SM00963 SRP54-type protein, helical bundle domain CLM_2745 SM00968 SMC proteins Flexible Hinge Domain CLM_2747 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_2748 SM00358 Double-stranded RNA binding motif CLM_2748 SM00535 Ribonuclease III family CLM_2763 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_2763 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2789 SM00091 PAS domain CLM_2789 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_2789 SM00382 ATPases associated with a variety of cellular activities CLM_2795 SM00487 DEAD-like helicases superfamily CLM_2795 SM00490 helicase superfamily c-terminal domain CLM_2796 SM01120 CLM_2796 CLM_2796 SM01121 CLM_2796 CLM_2801 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CLM_2804 SM00220 Serine/Threonine protein kinases, catalytic domain CLM_2804 SM00740 CLM_2804 CLM_2805 SM00331 Sigma factor PP2C-like phosphatases CLM_2805 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLM_2811 SM00487 DEAD-like helicases superfamily CLM_2811 SM00490 helicase superfamily c-terminal domain CLM_2813 SM01409 CLM_2813 CLM_2814 SM00072 Guanylate kinase homologues. CLM_2817 SM00870 CLM_2817 CLM_2824 SM00382 ATPases associated with a variety of cellular activities CLM_2827 SM00382 ATPases associated with a variety of cellular activities CLM_2831 SM00091 PAS domain CLM_2831 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_2831 SM00387 Histidine kinase-like ATPases CLM_2831 SM00388 His Kinase A (phosphoacceptor) domain CLM_2832 SM00448 cheY-homologous receiver domain CLM_2832 SM00862 Transcriptional regulatory protein, C terminal CLM_2839 SM00864 Tubulin/FtsZ family, GTPase domain CLM_2839 SM00865 Tubulin/FtsZ family, C-terminal domain CLM_2840 SM00842 Cell division protein FtsA CLM_2843 SM00382 ATPases associated with a variety of cellular activities CLM_2865 SM00838 Elongation factor G C-terminus CLM_2866 SM00849 Metallo-beta-lactamase superfamily CLM_2869 SM00732 Likely ribonuclease with RNase H fold. CLM_2871 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLM_2877 SM00382 ATPases associated with a variety of cellular activities CLM_2887 SM01211 CLM_2887 CLM_2915 SM00287 Bacterial SH3 domain homologues CLM_2915 SM00646 CLM_2915 CLM_2957 SM00530 Helix-turn-helix XRE-family like proteins CLM_2978 SM00450 Rhodanese Homology Domain CLM_2982 SM00849 Metallo-beta-lactamase superfamily CLM_2996 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_2998 SM00770 Zinc dependent phospholipase C (alpha toxin) CLM_3000 SM00831 Cation transporter/ATPase, N-terminus CLM_3001 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_3001 SM01131 CLM_3001 CLM_3010 SM00382 ATPases associated with a variety of cellular activities CLM_3010 SM00962 SRP54-type protein, GTPase domain CLM_3025 SM00382 ATPases associated with a variety of cellular activities CLM_3038 SM00155 Phospholipase D. Active site motifs. CLM_3044 SM00858 CLM_3044 CLM_3059 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_3067 SM00028 Tetratricopeptide repeats CLM_3079 SM00984 UDP binding domain CLM_3086 SM00858 CLM_3086 CLM_3092 SM00028 Tetratricopeptide repeats CLM_3095 SM00028 Tetratricopeptide repeats CLM_3111 SM00260 Two component signalling adaptor domain CLM_3112 SM00448 cheY-homologous receiver domain CLM_3114 SM00073 Histidine Phosphotransfer domain CLM_3114 SM00260 Two component signalling adaptor domain CLM_3114 SM00387 Histidine kinase-like ATPases CLM_3114 SM01231 CLM_3114 CLM_3115 SM00138 Methyltransferase, chemotaxis proteins CLM_3116 SM00448 cheY-homologous receiver domain CLM_3118 SM00260 Two component signalling adaptor domain CLM_3119 SM01245 CLM_3119 CLM_3121 SM01061 CAT RNA binding domain CLM_3126 SM00890 Domain of unknown function CLM_3129 SM00387 Histidine kinase-like ATPases CLM_3129 SM00388 His Kinase A (phosphoacceptor) domain CLM_3131 SM00518 AP endonuclease family 2 CLM_3137 SM00434 DNA Topoisomerase IV CLM_3138 SM00387 Histidine kinase-like ATPases CLM_3138 SM00433 TopoisomeraseII CLM_3148 SM00342 helix_turn_helix, arabinose operon control protein CLM_3155 SM00382 ATPases associated with a variety of cellular activities CLM_3156 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_3166 SM00487 DEAD-like helicases superfamily CLM_3166 SM00490 helicase superfamily c-terminal domain CLM_3169 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_3175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_3175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_3186 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_3187 SM00382 ATPases associated with a variety of cellular activities CLM_3190 SM01066 Carbohydrate binding domain CLM_3191 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_3191 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_3196 SM00636 CLM_3196 CLM_3199 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_3199 SM00866 CLM_3199 CLM_3200 SM01061 CAT RNA binding domain CLM_3205 SM00382 ATPases associated with a variety of cellular activities CLM_3209 SM00849 Metallo-beta-lactamase superfamily CLM_3218 SM00882 Coenzyme A transferase CLM_3219 SM00882 Coenzyme A transferase CLM_3222 SM01092 CO dehydrogenase flavoprotein C-terminal domain CLM_3223 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM_3233 SM00644 CLM_3233 CLM_3233 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. CLM_3237 SM00382 ATPases associated with a variety of cellular activities CLM_3245 SM00342 helix_turn_helix, arabinose operon control protein CLM_3254 SM00382 ATPases associated with a variety of cellular activities CLM_3265 SM00849 Metallo-beta-lactamase superfamily CLM_3266 SM00831 Cation transporter/ATPase, N-terminus CLM_3269 SM01209 CLM_3269 CLM_3269 SM01210 CLM_3269 CLM_3270 SM00798 AICARFT/IMPCHase bienzyme CLM_3270 SM00851 MGS-like domain CLM_3275 SM01001 AIR carboxylase CLM_3277 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM_3285 SM00382 ATPases associated with a variety of cellular activities CLM_3292 SM00382 ATPases associated with a variety of cellular activities CLM_3305 SM01091 Transporter associated domain CLM_3314 SM00382 ATPases associated with a variety of cellular activities CLM_3315 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_3318 SM00100 Cyclic nucleotide-monophosphate binding domain CLM_3326 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_3326 SM01091 Transporter associated domain CLM_3333 SM00400 zinc finger CLM_3333 SM00493 CLM_3333 CLM_3334 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_3337 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_3342 SM00014 Acid phosphatase homologues CLM_3344 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_3350 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_3353 SM00271 DnaJ molecular chaperone homology domain CLM_3357 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_3358 SM00838 Elongation factor G C-terminus CLM_3373 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLM_3374 SM00936 Penicillin-binding protein 5, C-terminal domain CLM_3378 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_3380 SM01103 CLM_3380 CLM_3386 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_3388 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_3411 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CLM_3411 SM00475 5'-3' exonuclease CLM_3411 SM00482 DNA polymerase A domain CLM_3413 SM00287 Bacterial SH3 domain homologues CLM_3413 SM00646 CLM_3413 CLM_3422 SM00282 Laminin G domain CLM_3444 SM00382 ATPases associated with a variety of cellular activities CLM_3446 SM00530 Helix-turn-helix XRE-family like proteins CLM_3447 SM00530 Helix-turn-helix XRE-family like proteins CLM_3448 SM00530 Helix-turn-helix XRE-family like proteins CLM_3461 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_3462 SM00849 Metallo-beta-lactamase superfamily CLM_3464 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_3464 SM00954 Region found in RelA / SpoT proteins CLM_3472 SM01323 CLM_3472 CLM_3475 SM00382 ATPases associated with a variety of cellular activities CLM_3480 SM00567 E-Z type HEAT repeats CLM_3481 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLM_3510 SM00365 Leucine-rich repeat, SDS22-like subfamily CLM_3514 SM00984 UDP binding domain CLM_3516 SM00646 CLM_3516 CLM_3517 SM00646 CLM_3517 CLM_3518 SM00047 Lysozyme subfamily 2 CLM_3520 SM00028 Tetratricopeptide repeats CLM_3526 SM01240 CLM_3526 CLM_3528 SM00463 Small MutS-related domain CLM_3528 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLM_3528 SM00534 ATPase domain of DNA mismatch repair MUTS family CLM_3537 SM00873 B3/4 domain CLM_3537 SM00874 tRNA synthetase B5 domain CLM_3537 SM00896 Ferredoxin-fold anticodon binding domain CLM_3539 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLM_3546 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLM_3550 SM00382 ATPases associated with a variety of cellular activities CLM_3559 SM00382 ATPases associated with a variety of cellular activities CLM_3560 SM00382 ATPases associated with a variety of cellular activities CLM_3564 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLM_3565 SM01130 CLM_3565 CLM_3578 SM00382 ATPases associated with a variety of cellular activities CLM_3582 SM00382 ATPases associated with a variety of cellular activities CLM_3584 SM00028 Tetratricopeptide repeats CLM_3585 SM00460 Transglutaminase/protease-like homologues CLM_3590 SM00903 Flavin reductase like domain CLM_3597 SM00530 Helix-turn-helix XRE-family like proteins CLM_3598 SM00292 breast cancer carboxy-terminal domain CLM_3600 SM00327 von Willebrand factor (vWF) type A domain CLM_3601 SM00382 ATPases associated with a variety of cellular activities CLM_3608 SM00382 ATPases associated with a variety of cellular activities CLM_3609 SM00893 Electron transfer flavoprotein domain CLM_3610 SM00893 Electron transfer flavoprotein domain CLM_3616 SM00465 GIY-YIG type nucleases (URI domain) CLM_3618 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_3624 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_3640 SM00382 ATPases associated with a variety of cellular activities CLM_3640 SM00464 Found in ATP-dependent protease La (LON) CLM_3641 SM00382 ATPases associated with a variety of cellular activities CLM_3642 SM00382 ATPases associated with a variety of cellular activities CLM_3642 SM00994 ClpX C4-type zinc finger CLM_3642 SM01086 C-terminal, D2-small domain, of ClpB protein CLM_3650 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CLM_3660 SM00382 ATPases associated with a variety of cellular activities CLM_3699 SM00845 GatB domain CLM_3704 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLM_3704 SM00292 breast cancer carboxy-terminal domain CLM_3704 SM00532 Ligase N family CLM_3707 SM00363 S4 RNA-binding domain CLM_3719 SM00893 Electron transfer flavoprotein domain CLM_3720 SM00893 Electron transfer flavoprotein domain CLM_3729 SM00116 Domain in cystathionine beta-synthase and other proteins. CLM_3729 SM01240 CLM_3729 CLM_3733 SM00883 Chaperonin 10 Kd subunit CLM_3737 SM00478 endonuclease III CLM_3740 SM00881 CoA binding domain CLM_3741 SM00382 ATPases associated with a variety of cellular activities CLM_3742 SM00448 cheY-homologous receiver domain CLM_3742 SM00850 LytTr DNA-binding domain CLM_3743 SM00387 Histidine kinase-like ATPases CLM_3745 SM01264 CLM_3745 CLM_3746 SM00878 Biotin carboxylase C-terminal domain CLM_3755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLM_3773 SM00382 ATPases associated with a variety of cellular activities CLM_3778 SM00382 ATPases associated with a variety of cellular activities CLM_3779 SM01068 Putative carbohydrate binding domain CLM_3787 SM00382 ATPases associated with a variety of cellular activities CLM_3789 SM00946 Prolyl-tRNA synthetase, C-terminal CLM_3792 SM00382 ATPases associated with a variety of cellular activities CLM_3796 SM00387 Histidine kinase-like ATPases CLM_3796 SM00388 His Kinase A (phosphoacceptor) domain CLM_3797 SM00448 cheY-homologous receiver domain CLM_3797 SM00862 Transcriptional regulatory protein, C terminal CLM_3799 SM00382 ATPases associated with a variety of cellular activities CLM_3806 SM00382 ATPases associated with a variety of cellular activities CLM_3809 SM00267 diguanylate cyclase CLM_3819 SM00422 helix_turn_helix, mercury resistance CLM_3822 SM00342 helix_turn_helix, arabinose operon control protein CLM_3836 SM00481 DNA polymerase alpha chain like domain CLM_3841 SM00481 DNA polymerase alpha chain like domain CLM_3842 SM00465 GIY-YIG type nucleases (URI domain) CLM_3847 SM00240 Forkhead associated domain CLM_3849 SM00487 DEAD-like helicases superfamily CLM_3849 SM00490 helicase superfamily c-terminal domain CLM_3850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLM_3851 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLM_3851 SM00245 tail specific protease CLM_3853 SM00382 ATPases associated with a variety of cellular activities CLM_3856 SM00861 Transketolase, pyrimidine binding domain CLM_3860 SM01005 Alanine racemase, C-terminal domain CLM_3869 SM00363 S4 RNA-binding domain CLM_3869 SM01390 CLM_3869 CLM_3872 SM00422 helix_turn_helix, mercury resistance CLM_3872 SM00871 Bacterial transcription activator, effector binding domain CLM_3884 SM00829 Enoylreductase CLM_3903 SM00028 Tetratricopeptide repeats CLM_3906 SM00091 PAS domain CLM_3906 SM00382 ATPases associated with a variety of cellular activities CLM_3907 SM00028 Tetratricopeptide repeats CLM_3910 SM00646 CLM_3910 CLM_3916 SM00382 ATPases associated with a variety of cellular activities CLM_3917 SM00382 ATPases associated with a variety of cellular activities CLM_3919 SM00662 RNA polymerases D CLM_3920 SM00363 S4 RNA-binding domain CLM_3920 SM01390 CLM_3920 CLM_3924 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_3937 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLM_3938 SM01374 CLM_3938 CLM_3942 SM00322 K homology RNA-binding domain CLM_3945 SM01382 CLM_3945 CLM_3945 SM01383 CLM_3945 CLM_3949 SM01403 CLM_3949 CLM_3951 SM00838 Elongation factor G C-terminus CLM_3951 SM00889 Elongation factor G, domain IV CLM_3955 SM00663 RNA polymerase I subunit A N-terminus CLM_3960 SM00649 Ribosomal protein L11/L12 CLM_3961 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CLM_3961 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLM_3969 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLM_3972 SM00840 CLM_3972 CLM_3976 SM00670 Large family of predicted nucleotide-binding domains CLM_3979 SM00382 ATPases associated with a variety of cellular activities CLM_3980 SM00382 ATPases associated with a variety of cellular activities CLM_3980 SM01086 C-terminal, D2-small domain, of ClpB protein CLM_3985 SM00838 Elongation factor G C-terminus CLM_3985 SM00889 Elongation factor G, domain IV CLM_4010 SM00382 ATPases associated with a variety of cellular activities CLM_4012 SM00977 TilS substrate C-terminal domain CLM_4013 SM00331 Sigma factor PP2C-like phosphatases CLM_4021 SM00316 Ribosomal protein S1-like RNA-binding domain CLM_4025 SM00363 S4 RNA-binding domain CLM_4026 SM00411 bacterial (prokaryotic) histone like domain CLM_4029 SM00966 SpoVT / AbrB like domain CLM_4031 SM00487 DEAD-like helicases superfamily CLM_4031 SM00490 helicase superfamily c-terminal domain CLM_4031 SM00982 CLM_4031 CLM_4031 SM01058 CarD-like/TRCF domain CLM_4033 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLM_4034 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLM_4034 SM00387 Histidine kinase-like ATPases CLM_4034 SM00388 His Kinase A (phosphoacceptor) domain CLM_4035 SM00448 cheY-homologous receiver domain CLM_4035 SM00862 Transcriptional regulatory protein, C terminal CLM_4036 SM01400 CLM_4036 CLM_4047 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_4051 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLM_4052 SM00530 Helix-turn-helix XRE-family like proteins CLM_4056 SM01230 CLM_4056 CLM_4059 SM00849 Metallo-beta-lactamase superfamily CLM_4060 SM00909 Sporulation and spore germination CLM_4068 SM00342 helix_turn_helix, arabinose operon control protein CLM_4074 SM00729 Elongator protein 3, MiaB family, Radical SAM CLM_4074 SM00876 Biotin and Thiamin Synthesis associated domain CLM_4075 SM00876 Biotin and Thiamin Synthesis associated domain CLM_4079 SM00481 DNA polymerase alpha chain like domain CLM_4088 SM00878 Biotin carboxylase C-terminal domain CLM_4091 SM00825 Beta-ketoacyl synthase CLM_4092 SM00822 CLM_4092 CLM_4093 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CLM_4097 SM00347 helix_turn_helix multiple antibiotic resistance protein CLM_4117 SM00881 CoA binding domain CLM_4121 SM00788 Adenylosuccinate synthetase CLM_4125 SM00382 ATPases associated with a variety of cellular activities CLM_4126 SM00382 ATPases associated with a variety of cellular activities CLM_4143 SM00470 ParB-like nuclease domain CLM_4145 SM00470 ParB-like nuclease domain CLM_4147 SM01228 CLM_4147 CLM_4149 SM00393 Putative single-stranded nucleic acids-binding domain CLM_4149 SM01245 CLM_4149 CLM_4151 SM01234 CLM_4151