locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
CLM_0001	CLM_0001	dnaA	dnaA	157	1494	+	chromosomal replication initiator protein DnaA	identified by match to protein family HMM PF00308%3B match to protein family HMM PF08299%3B match to protein family HMM TIGR00362	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0001
CLM_0002	CLM_0002	dnaN	dnaN	1757	2860	+	DNA polymerase III%2C beta chain	identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0002
CLM_0003	CLM_0003		CLM_0003	2879	3085	+	S4 domain protein	identified by match to protein family HMM PF01479%3B match to protein family HMM TIGR02988	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0003
CLM_0004	CLM_0004	recF	recF	3164	4258	+	DNA replication and repair protein RecF	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0004
CLM_0005	CLM_0005		CLM_0005	4279	4542	+	conserved hypothetical protein		gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0005
CLM_0006	CLM_0006	gyrB	gyrB	4560	6473	+	DNA gyrase%2C B subunit	identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059	gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0006
CLM_0007	CLM_0007	gyrA	gyrA	6499	9039	+	DNA gyrase%2C A subunit	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063	gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0007
CLM_0008	CLM_0008	rrs	rrs	9454	10955	+	16S ribosomal RNA		rRNA	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0008
CLM_0011	CLM_0011	rrl	rrl	11182	14083	+	23S ribosomal RNA		rRNA	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0011
CLM_0012	CLM_0012	rrf	rrf	14177	14293	+	5S ribosomal RNA		rRNA	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0012
CLM_0013	CLM_0013		CLM_0013	14303	14381	+	tRNA-Met		tRNA	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0013
CLM_0014	CLM_0014		CLM_0014	14383	14460	+	tRNA-Ala		tRNA	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0014
CLM_0015	CLM_0015		CLM_0015	14624	15076	+	conserved hypothetical protein		gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0015
CLM_0016	CLM_0016		CLM_0016	15092	15613	+	transcriptional regulator%2C biotin repressor family	identified by similarity to PDB:1J5Y_A%3B match to protein family HMM PF02829%3B match to protein family HMM PF08279	gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0016
CLM_0017	CLM_0017		CLM_0017	15615	16778	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04015	gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0017
CLM_0018	CLM_0018		CLM_0018	16783	19464	+	putative membrane protein	identified by match to protein family HMM PF03699	gene	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0018
CLM_0019	CLM_0019		CLM_0019	19601	20377	+	ErfK/YbiS/YcfS/YnhG family protein	identified by match to protein family HMM PF03734	gene	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0019
CLM_0020	CLM_0020		CLM_0020	20402	21799	+	oxidoreductase%2C FAD dependent	identified by match to protein family HMM PF01266%3B match to protein family HMM PF04324	gene	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0020
CLM_0021	CLM_0021		CLM_0021	21816	22169	+	conserved hypothetical protein	identified by match to protein family HMM PF07892	gene	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0021
CLM_0022	CLM_0022	serS	serS	22539	23819	+	serine--tRNA ligase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0022
CLM_0023	CLM_0023		CLM_0023	24095	24187	+	tRNA-Ser		tRNA	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0023
CLM_0024	CLM_0024		CLM_0024	24206	24298	+	tRNA-Ser		tRNA	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0024
CLM_0025	CLM_0025		CLM_0025	24602	24694	+	tRNA-Ser		tRNA	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0025
CLM_0026	CLM_0026		CLM_0026	24713	24805	+	tRNA-Ser		tRNA	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0026
CLM_0027	CLM_0027		CLM_0027	24888	24966	+	tRNA-Arg		tRNA	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0027
CLM_0028	CLM_0028	psd	psd	25001	25888	-	phosphatidylserine decarboxylase	identified by match to protein family HMM PF02666%3B match to protein family HMM TIGR00163	gene	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0028
CLM_0029	CLM_0029		CLM_0029	25991	27589	-	conserved hypothetical protein	identified by match to protein family HMM PF03109	gene	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0029
CLM_0030	CLM_0030		CLM_0030	27665	27985	-	conserved hypothetical protein		gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0030
CLM_0031	CLM_0031		CLM_0031	28170	28246	+	tRNA-Arg		tRNA	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0031
CLM_0032	CLM_0032		CLM_0032	28379	29941	+	putative sensory box sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728	gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0032
CLM_0033	CLM_0033	megL	megL	30101	31303	+	methionine gamma-lyase	identified by match to protein family HMM PF01053%3B match to protein family HMM PF01212%3B match to protein family HMM PF06838%3B match to protein family HMM TIGR01328	gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0033
CLM_0034	CLM_0034		CLM_0034	31427	31864	+	cytidine/deoxycytidylate deaminase family protein	identified by match to protein family HMM PF00383	gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0034
CLM_0035	CLM_0035		CLM_0035	32029	32120	+	tRNA-Ser		tRNA	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0035
CLM_0036	CLM_0036	srpB	srpB	32243	32345	+	Bacterial signal recognition particle RNA		gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0036
CLM_0037	CLM_0037	dnaX	dnaX	32509	34134	+	DNA polymerase III%2C gamma and tau subunit	identified by match to protein family HMM PF00004%3B match to protein family HMM TIGR02397	gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0037
CLM_0038	CLM_0038		CLM_0038	34199	34540	+	conserved hypothetical protein TIGR00103	identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103	gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0038
CLM_0039	CLM_0039	recR	recR	34573	35169	+	recombination protein RecR	identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0039
CLM_0040	CLM_0040		CLM_0040	35226	35489	+	conserved hypothetical protein		gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0040
CLM_0041	CLM_0041	bofA	bofA	35639	35899	+	sigma-K factor processing regulatory protein BofA	identified by similarity to SP:P24282%3B match to protein family HMM PF07441%3B match to protein family HMM TIGR02862	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0041
CLM_0042	CLM_0042	sfsA	sfsA	36050	36742	+	sugar fermentation stimulation protein	identified by match to protein family HMM PF03749%3B match to protein family HMM TIGR00230	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0042
CLM_0043	CLM_0043		CLM_0043	36798	37286	+	hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293	gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0043
CLM_0044	CLM_0044		CLM_0044	37404	38126	+	conserved hypothetical protein		gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0044
CLM_0045	CLM_0045		CLM_0045	38260	39048	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0045
CLM_0046	CLM_0046		CLM_0046	39067	39228	+	conserved hypothetical protein		gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0046
CLM_0047	CLM_0047		CLM_0047	39611	40315	+	thiF domain protein	identified by match to protein family HMM PF00899	gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0047
CLM_0048	CLM_0048		CLM_0048	40398	41507	+	major facilitator superfamily protein	identified by match to protein family HMM PF07690	gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0048
CLM_0049	CLM_0049		CLM_0049	41536	42480	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0049
CLM_0050	CLM_0050	rrs	rrs	42867	44368	+	16S ribosomal RNA		rRNA	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0050
CLM_0051	CLM_0051		CLM_0051	45926	46381	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0051
CLM_0052	CLM_0052		CLM_0052	46455	47111	-	conserved hypothetical protein		gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0052
CLM_0054	CLM_0054	rrf	rrf	47541	47657	+	5S ribosomal RNA		rRNA	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0054
CLM_0055	CLM_0055		CLM_0055	47663	47740	+	tRNA-Lys		tRNA	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0055
CLM_0056	CLM_0056		CLM_0056	47963	48559	-	uracil-DNA glycosylase family protein	identified by match to protein family HMM PF03167	gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0056
CLM_0057	CLM_0057	rrs	rrs	49423	50924	+	16S ribosomal RNA		rRNA	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0057
CLM_0058	CLM_0058		CLM_0058	52482	52937	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0058
CLM_0059	CLM_0059		CLM_0059	53011	53667	-	conserved hypothetical protein		gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0059
CLM_0061	CLM_0061	rrf	rrf	54099	54215	+	5S ribosomal RNA		rRNA	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0061
CLM_0062	CLM_0062		CLM_0062	54221	54298	+	tRNA-Lys		tRNA	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0062
CLM_0063	CLM_0063		CLM_0063	54640	55203	+	RNA polymerase sigma-70 factor family	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0063
CLM_0064	CLM_0064		CLM_0064	55200	56642	+	conserved hypothetical protein		gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0064
CLM_0065	CLM_0065	rrs	rrs	57287	58788	+	16S ribosomal RNA		rRNA	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0065
CLM_0066	CLM_0066		CLM_0066	60351	60806	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0066
CLM_0067	CLM_0067		CLM_0067	60880	61536	-	conserved hypothetical protein		gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0067
CLM_0069	CLM_0069	rrf	rrf	61968	62084	+	5S ribosomal RNA		rRNA	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0069
CLM_0071	CLM_0071		CLM_0071	62091	62168	+	tRNA-Phe		tRNA	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0071
CLM_0072	CLM_0072		CLM_0072	62427	62567	+	conserved hypothetical protein		gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0072
CLM_0073	CLM_0073		CLM_0073	62714	62995	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0073
CLM_0074	CLM_0074		CLM_0074	63230	63388	+	protein DltD	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0074
CLM_0076	CLM_0076		CLM_0076	63465	63578	+	hypothetical protein	identified by glimmer%3B putative	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0076
CLM_0077	CLM_0077	rrs	rrs	64297	65798	+	16S ribosomal RNA		rRNA	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0077
CLM_0078	CLM_0078		CLM_0078	67356	67811	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0078
CLM_0079	CLM_0079		CLM_0079	67885	68541	-	conserved hypothetical protein		gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0079
CLM_0081	CLM_0081	rrf	rrf	68972	69088	+	5S ribosomal RNA		rRNA	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0081
CLM_0082	CLM_0082		CLM_0082	69095	69172	+	tRNA-Phe		tRNA	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0082
CLM_0083	CLM_0083		CLM_0083	69312	70055	+	peptidil-prolyl isomerase family protein	identified by match to protein family HMM PF00639	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0083
CLM_0084	CLM_0084	rrs	rrs	70577	72078	+	16S ribosomal RNA		rRNA	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0084
CLM_0087	CLM_0087	rrl	rrl	72236	75137	+	23S ribosomal RNA		rRNA	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0087
CLM_0088	CLM_0088	rrf	rrf	75187	75303	+	5S ribosomal RNA		rRNA	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0088
CLM_0089	CLM_0089		CLM_0089	75661	76404	+	NAD-dependent deacetylase%2C Sir2 family	identified by match to protein family HMM PF02146	gene	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0089
CLM_0090	CLM_0090		CLM_0090	76486	76559	+	tRNA-Cys		tRNA	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0090
CLM_0091	CLM_0091		CLM_0091	76590	77498	-	LD-carboxypeptidase family protein	identified by match to protein family HMM PF02016	gene	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0091
CLM_0092	CLM_0092		CLM_0092	77534	78475	-	transporter%2C CorA metal ion transporter family	identified by match to protein family HMM PF01544	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0092
CLM_0093	CLM_0093		CLM_0093	78843	79346	+	conserved hypothetical protein		gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0093
CLM_0094	CLM_0094		CLM_0094	79351	80511	-	amidohydrolase homolog		gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0094
CLM_0095	CLM_0095		CLM_0095	80765	80977	+	csfB protein%2C homolog		gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0095
CLM_0096	CLM_0096		CLM_0096	80956	82404	+	Orn/Lys/Arg decarboxylase	identified by match to protein family HMM PF01276%3B match to protein family HMM PF03711	gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0096
CLM_0097	CLM_0097		CLM_0097	82428	83123	+	putative thymidylate kinase		gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0097
CLM_0098	CLM_0098		CLM_0098	83204	83533	+	conserved hypothetical protein	identified by match to protein family HMM PF06153	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0098
CLM_0099	CLM_0099		CLM_0099	83551	84495	+	putative DNA polymerase III%2C delta prime subunit		gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0099
CLM_0100	CLM_0100		CLM_0100	84497	85411	+	PSP1 domain protein	identified by match to protein family HMM PF04468	gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0100
CLM_0101	CLM_0101		CLM_0101	85423	85626	+	conserved hypothetical protein		gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0101
CLM_0102	CLM_0102		CLM_0102	85708	85878	+	ferredoxin%2C 4Fe-4S	identified by match to protein family HMM PF00037	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0102
CLM_0103	CLM_0103		CLM_0103	85999	86739	+	conserved hypothetical protein		gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0103
CLM_0104	CLM_0104		CLM_0104	86759	87613	+	tetrapyrrole methylase family protein	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0104
CLM_0105	CLM_0105		CLM_0105	87734	88831	+	NlpC/P60 family protein	identified by match to protein family HMM PF00877	gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0105
CLM_0106	CLM_0106		CLM_0106	88931	89177	-		transcriptional regulator%2C AbrB family%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0106
CLM_0108	CLM_0108		CLM_0108	89984	90595	+	conserved hypothetical protein	identified by match to protein family HMM PF08876	gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0108
CLM_0109	CLM_0109	arcA	arcA	91018	92229	+	arginine deiminase	identified by match to protein family HMM PF02274%3B match to protein family HMM TIGR01078	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0109
CLM_0110	CLM_0110	ispF	ispF	92315	92782	-	2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0110
CLM_0111	CLM_0111		CLM_0111	92858	93190	-	hypothetical protein	identified by glimmer%3B putative	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0111
CLM_0112	CLM_0112		CLM_0112	93518	94387	+	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0112
CLM_0113	CLM_0113		CLM_0113	94656	94898	-	conserved hypothetical protein		gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0113
CLM_0114	CLM_0114	spmA	spmA	95018	95593	+	spore maturation protein A	identified by similarity to SP:P35157%3B match to protein family HMM PF07670	gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0114
CLM_0115	CLM_0115	spmB	spmB	95606	96124	+	spore maturation protein B	identified by similarity to SP:P35158%3B match to protein family HMM PF07670	gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0115
CLM_0116	CLM_0116		CLM_0116	96369	97706	-	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0116
CLM_0117	CLM_0117	udgA	udgA	97850	98422	+	uracil-DNA glycosylase	identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00758	gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0117
CLM_0118	CLM_0118		CLM_0118	98451	98885	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0118
CLM_0119	CLM_0119	metG	metG	99267	101204	+	methionine--tRNA ligase	identified by match to protein family HMM PF01588%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00398%3B match to protein family HMM TIGR00399	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0119
CLM_0120	CLM_0120		CLM_0120	101369	102874	+	conserved hypothetical protein	identified by match to protein family HMM PF04286	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0120
CLM_0121	CLM_0121		CLM_0121	103025	103819	+	hydrolase%2C TatD family	identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0121
CLM_0122	CLM_0122		CLM_0122	104047	105105	+	3D/G5 domain protein	identified by match to protein family HMM PF03990%3B match to protein family HMM PF06725%3B match to protein family HMM PF07501	gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0122
CLM_0123	CLM_0123		CLM_0123	105178	105723	+	primase homolog	identified by match to protein family HMM PF01751%3B match to protein family HMM TIGR00334	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0123
CLM_0124	CLM_0124	ksgA	ksgA	105725	106552	+	dimethyladenosine transferase	identified by match to protein family HMM PF00398%3B match to protein family HMM TIGR00755	gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0124
CLM_0125	CLM_0125		CLM_0125	106631	107926	+	conserved hypothetical protein		gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0125
CLM_0126	CLM_0126		CLM_0126	108085	108672	+	conserved hypothetical protein		gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0126
CLM_0127	CLM_0127		CLM_0127	108840	109673	+	putative lipoprotein		gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0127
CLM_0128	CLM_0128		CLM_0128	109841	110902	+	putative macrolide efflux transporter%2C RND family%2C MFP subunit	identified by match to protein family HMM TIGR01730	gene	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0128
CLM_0129	CLM_0129		CLM_0129	110913	111608	+	putative macrolide efflux ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0129
CLM_0130	CLM_0130		CLM_0130	111605	112813	+	putative macrolide efflux ABC transporter%2C permease protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02687	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0130
CLM_0131	CLM_0131		CLM_0131	112895	113737	+	MRP protein homolog		gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0131
CLM_0132	CLM_0132		CLM_0132	113877	114068	+	iron-sulfur cluster-binding protein		gene	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0132
CLM_0133	CLM_0133		CLM_0133	114083	114277	+		hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by glimmer%3B putative	pseudogene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0133
CLM_0134	CLM_0134		CLM_0134	114514	114690	-	hypothetical protein	identified by glimmer%3B putative	gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0134
CLM_0135	CLM_0135		CLM_0135	114768	115838	+	putative diguanylate cyclase	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0135
CLM_0136	CLM_0136		CLM_0136	115895	116623	+	mgtC family protein	identified by match to protein family HMM PF02308	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0136
CLM_0137	CLM_0137	nrdD	nrdD	116913	119054	+	anaerobic ribonucleoside-triphosphate reductase	identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR02487	gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0137
CLM_0138	CLM_0138	nrdG	nrdG	119071	119586	+	anaerobic ribonucleoside-triphosphate reductase activating protein	identified by match to protein family HMM TIGR02491	gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0138
CLM_0139	CLM_0139		CLM_0139	120116	120790	-	conserved hypothetical protein		gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0139
CLM_0140	CLM_0140		CLM_0140	120792	121130	-	transcriptional regulator%2C PadR family	identified by match to protein family HMM PF03551	gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0140
CLM_0141	CLM_0141		CLM_0141	121250	121888	-	conserved hypothetical protein	identified by similarity to PDB:1VJN_A	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0141
CLM_0142	CLM_0142	ileS	ileS	122330	125446	+	isoleucine--tRNA ligase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00392	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0142
CLM_0143	CLM_0143		CLM_0143	125597	126595	+	transcriptional regulator%2C LacI family	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0143
CLM_0144	CLM_0144		CLM_0144	126811	130863	+	conserved hypothetical protein		gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0144
CLM_0145	CLM_0145		CLM_0145	130938	132005	+	putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	identified by match to protein family HMM PF00483	gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0145
CLM_0146	CLM_0146		CLM_0146	132341	133630	+	conserved hypothetical protein	identified by match to protein family HMM PF01969%3B match to protein family HMM TIGR00299	gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0146
CLM_0147	CLM_0147		CLM_0147	133635	134441	+	conserved hypothetical protein TIGR00268	identified by match to protein family HMM PF01171%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00268	gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0147
CLM_0148	CLM_0148		CLM_0148	134461	135207	+	conserved hypothetical protein		gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0148
CLM_0149	CLM_0149		CLM_0149	135432	136814	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0149
CLM_0150	CLM_0150		CLM_0150	137001	138275	+	putative arabinose-binding protein	identified by similarity to SP:P94528%3B match to protein family HMM PF01547	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0150
CLM_0151	CLM_0151		CLM_0151	138377	139492	-	putative mannosyltransferase	identified by similarity to GB:BAA07751.1%3B match to protein family HMM PF00534	gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0151
CLM_0152	CLM_0152		CLM_0152	139658	140668	+	spore coat protein%2C CotS family	identified by match to protein family HMM TIGR02906	gene	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0152
CLM_0153	CLM_0153		CLM_0153	140683	140877	+	hypothetical protein	identified by glimmer%3B putative	gene	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0153
CLM_0154	CLM_0154		CLM_0154	140904	141671	+	conserved hypothetical protein		gene	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0154
CLM_0155	CLM_0155		CLM_0155	141684	142697	+	spore coat protein%2C CotS family	identified by match to protein family HMM TIGR02906	gene	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0155
CLM_0156	CLM_0156		CLM_0156	143051	144178	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0156
CLM_0157	CLM_0157	cotS	cotS	144295	145299	+	spore coat protein CotS	identified by similarity to SP:P46914%3B match to protein family HMM TIGR02906	gene	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0157
CLM_0158	CLM_0158		CLM_0158	145423	146325	+	sporulation peptidase YabG	identified by match to protein family HMM PF05582%3B match to protein family HMM TIGR02855	gene	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0158
CLM_0159	CLM_0159		CLM_0159	146521	146757	+	conserved hypothetical protein	identified by match to protein family HMM PF06257	gene	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0159
CLM_0160	CLM_0160		CLM_0160	146861	148423	+	LysM domain protein	identified by match to protein family HMM PF01476	gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0160
CLM_0161	CLM_0161		CLM_0161	148669	148782	+	conserved hypothetical protein		gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0161
CLM_0162	CLM_0162	cphB	cphB	148752	149552	+	cyanophycinase	identified by match to protein family HMM PF03575%3B match to protein family HMM TIGR02069	gene	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0162
CLM_0163	CLM_0163	cphA	cphA	149596	152217	+	cyanophycin synthase (L-aspartate-adding)	identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR02068	gene	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0163
CLM_0164	CLM_0164	ispE	ispE	152310	153152	+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	identified by match to protein family HMM PF00288%3B match to protein family HMM PF08544%3B match to protein family HMM TIGR00154	gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0164
CLM_0165	CLM_0165		CLM_0165	153320	153517	+	hypothetical protein	identified by glimmer%3B putative	gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0165
CLM_0166	CLM_0166		CLM_0166	153578	155098	+	spore germination protein	identified by match to protein family HMM PF03323	gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0166
CLM_0167	CLM_0167		CLM_0167	155118	156215	+	spore germination protein	identified by match to protein family HMM PF03845%3B match to protein family HMM TIGR00912	gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0167
CLM_0168	CLM_0168		CLM_0168	156265	157446	+	germination protein%2C Ger(x)C family	identified by match to protein family HMM PF05504%3B match to protein family HMM TIGR02887	gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0168
CLM_0169	CLM_0169	spoIIR	spoIIR	157520	158152	+	stage II sporulation protein R	identified by match to protein family HMM PF09551%3B match to protein family HMM TIGR02837	gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0169
CLM_0170	CLM_0170		CLM_0170	158189	159430	-	conserved hypothetical protein	identified by match to protein family HMM PF04101%3B match to protein family HMM PF06925	gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0170
CLM_0171	CLM_0171	ypeB	ypeB	159803	161173	+	germination protein YpeB	identified by match to protein family HMM PF03413%3B match to protein family HMM TIGR02889	gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0171
CLM_0172	CLM_0172		CLM_0172	161276	162256	+	conserved hypothetical protein	identified by match to protein family HMM PF02568	gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0172
CLM_0173	CLM_0173		CLM_0173	162281	162709	+	conserved hypothetical protein	identified by match to protein family HMM PF09148	gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0173
CLM_0174	CLM_0174		CLM_0174	162841	163140	+	conserved hypothetical protein		gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0174
CLM_0175	CLM_0175	pyrG	pyrG	163374	164975	+	CTP synthase	identified by match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337	gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0175
CLM_0176	CLM_0176		CLM_0176	165423	165767	+	conserved hypothetical protein		gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0176
CLM_0177	CLM_0177	rho	rho	165939	167384	+	transcription termination factor Rho	identified by match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM TIGR00767	gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0177
CLM_0178	CLM_0178	rpmE	rpmE	167424	167642	-	ribosomal protein L31	identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105	gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0178
CLM_0179	CLM_0179	tdk	tdk	167869	168444	+	thymidine kinase	identified by match to protein family HMM PF00265	gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0179
CLM_0180	CLM_0180		CLM_0180	168461	169378	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF07136	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0180
CLM_0181	CLM_0181	prmC	prmC	169386	170237	+	protein-(glutamine-N5) methyltransferase%2C release factor-specific	identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536%3B match to protein family HMM TIGR03534	gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0181
CLM_0182	CLM_0182	prfA	prfA	170319	171395	+	peptide chain release factor 1	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0182
CLM_0183	CLM_0183		CLM_0183	171423	172031	+	conserved hypothetical protein		gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0183
CLM_0184	CLM_0184		CLM_0184	172090	172809	+	ZIP transporter family protein	identified by match to protein family HMM PF02535	gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0184
CLM_0185	CLM_0185		CLM_0185	172830	173885	+	Sua5/YciO/YrdC/YwlC family protein	identified by match to protein family HMM PF01300%3B match to protein family HMM PF03481%3B match to protein family HMM TIGR00057	gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0185
CLM_0186	CLM_0186		CLM_0186	173895	174347	+	low molecular weight protein tyrosine phosphatase	identified by match to protein family HMM PF01451	gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0186
CLM_0187	CLM_0187	rpiB	rpiB	174407	174844	+	ribose 5-phosphate isomerase B	identified by match to protein family HMM PF02502%3B match to protein family HMM TIGR00689%3B match to protein family HMM TIGR01120	gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0187
CLM_0188	CLM_0188	upp	upp	174874	175503	+	uracil phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01091	gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0188
CLM_0189	CLM_0189		CLM_0189	175731	175907	-	conserved hypothetical protein		gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0189
CLM_0190	CLM_0190		CLM_0190	176642	177130	+	cytidine/deoxycytidylate deaminase family protein	identified by match to protein family HMM PF00383	gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0190
CLM_0191	CLM_0191	tagO	tagO	177238	178272	+	undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase	identified by similarity to SP:O34753%3B match to protein family HMM PF00953	gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0191
CLM_0192	CLM_0192	mnaA	mnaA	178286	179443	+	UDP-N-acetylglucosamine 2-epimerase	identified by similarity to SP:P39131%3B match to protein family HMM PF02350%3B match to protein family HMM TIGR00236	gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0192
CLM_0193	CLM_0193	atpI	atpI	179935	180303	+	ATP synthase F0%2C I subunit	identified by similarity to GB:AAK72436.1	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0193
CLM_0194	CLM_0194	atpB	atpB	180318	180998	+	ATP synthase F0%2C A subunit	identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131	gene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0194
CLM_0195	CLM_0195	atpE	atpE	181039	181278	+	ATP synthase F0%2C C subunit	identified by match to protein family HMM PF00137%3B match to protein family HMM TIGR01260	gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0195
CLM_0196	CLM_0196	atpF	atpF	181354	181833	+	ATP synthase F0%2C B subunit	identified by match to protein family HMM PF00430%3B match to protein family HMM TIGR01144	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0196
CLM_0197	CLM_0197	atpH	atpH	181836	182375	+	ATP synthase F1%2C delta subunit	identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145	gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0197
CLM_0198	CLM_0198	atpA	atpA	182386	183900	+	ATP synthase F1%2C alpha subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM PF09378%3B match to protein family HMM TIGR00962	gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0198
CLM_0199	CLM_0199	atpG	atpG	183922	184770	+	ATP synthase F1%2C gamma subunit	identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146	gene	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0199
CLM_0200	CLM_0200	atpD	atpD	184784	186175	+	ATP synthase F1%2C beta subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039	gene	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0200
CLM_0201	CLM_0201	atpC	atpC	186200	186601	+	ATP synthase F1%2C epsilon subunit	identified by match to protein family HMM PF00401%3B match to protein family HMM PF02823%3B match to protein family HMM TIGR01216	gene	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0201
CLM_0202	CLM_0202		CLM_0202	186794	187501	+	conserved hypothetical protein		gene	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0202
CLM_0203	CLM_0203	murA	murA	187525	188781	+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072	gene	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0203
CLM_0204	CLM_0204	spoIID	spoIID	189049	190125	+	stage II sporulation protein D	identified by match to protein family HMM PF08486%3B match to protein family HMM TIGR02669%3B match to protein family HMM TIGR02870	gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0204
CLM_0205	CLM_0205		CLM_0205	190599	191345	+	putative peptidase	identified by match to protein family HMM PF01551	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0205
CLM_0206	CLM_0206	spoIIID	spoIIID	191453	191707	+	stage III sporulation protein D	identified by similarity to SP:P15281%3B match to protein family HMM TIGR02844	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0206
CLM_0207	CLM_0207	mbl	mbl	191807	192835	+	Mbl protein	identified by similarity to SP:P39751%3B match to protein family HMM PF02491%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904	gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0207
CLM_0208	CLM_0208		CLM_0208	192961	193485	-	putative sporulation protein YyaC	identified by match to protein family HMM PF06866%3B match to protein family HMM TIGR02841	gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0208
CLM_0209	CLM_0209		CLM_0209	193534	194256	-	conserved hypothetical protein	identified by match to protein family HMM PF01171	gene	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0209
CLM_0210	CLM_0210		CLM_0210	194484	194559	+	tRNA-Thr		tRNA	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0210
CLM_0211	CLM_0211		CLM_0211	194564	194650	+	tRNA-Tyr		tRNA	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0211
CLM_0212	CLM_0212		CLM_0212	194662	194739	+	tRNA-Val		tRNA	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0212
CLM_0213	CLM_0213		CLM_0213	194756	194831	+	tRNA-Thr		tRNA	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0213
CLM_0214	CLM_0214		CLM_0214	194836	194922	+	tRNA-Tyr		tRNA	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0214
CLM_0216	CLM_0216	metK	metK	195232	196407	+	methionine adenosyltransferase	identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034	gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0216
CLM_0217	CLM_0217		CLM_0217	196598	198832	+	helicase%2C RecD/TraA family	identified by match to protein family HMM TIGR01448	gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0217
CLM_0218	CLM_0218		CLM_0218	198858	199880	+	conserved hypothetical protein		gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0218
CLM_0219	CLM_0219		CLM_0219	199853	200530	+	comF protein%2C homolog	identified by match to protein family HMM PF00156	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0219
CLM_0220	CLM_0220	yfiA	yfiA	200955	201482	+	ribosomal subunit interface protein	identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741	gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0220
CLM_0221	CLM_0221	secA	secA	201710	204217	+	preprotein translocase%2C SecA subunit	identified by match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963	gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0221
CLM_0222	CLM_0222	prfB	prfB	204581	205558	+	peptide chain release factor 2	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020	gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0222
CLM_0223	CLM_0223		CLM_0223	205861	207225	-	peptidase family protein	identified by match to protein family HMM PF04389	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0223
CLM_0224	CLM_0224		CLM_0224	207333	209489	+	RNA-binding protein	identified by match to protein family HMM PF00575%3B match to protein family HMM PF09371	gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0224
CLM_0226	CLM_0226		CLM_0226	209773	210366	+	putative membrane protein		gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0226
CLM_0227	CLM_0227		CLM_0227	210777	212426	+	conserved hypothetical protein		gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0227
CLM_0228	CLM_0228		CLM_0228	212447	212707	+	conserved hypothetical protein		gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0228
CLM_0229	CLM_0229		CLM_0229	212721	213407	+	Ser/Thr protein phosphatase family protein	identified by match to protein family HMM PF00149	gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0229
CLM_0230	CLM_0230		CLM_0230	213491	213772	+	transcriptional regulator%2C ArsR family	identified by match to protein family HMM PF01022	gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0230
CLM_0231	CLM_0231		CLM_0231	213812	216265	+	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00070%3B match to protein family HMM PF00581%3B match to protein family HMM PF01206%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992	gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0231
CLM_0232	CLM_0232		CLM_0232	216293	217147	-	conserved hypothetical protein		gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0232
CLM_0233	CLM_0233		CLM_0233	217304	218092	+	RelA/SpoT domain protein	identified by match to protein family HMM PF04607	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0233
CLM_0234	CLM_0234	leuS	leuS	218397	220838	-	leucine--tRNA ligase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00396	gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0234
CLM_0235	CLM_0235		CLM_0235	221215	221565	-	conserved hypothetical protein	identified by match to protein family HMM PF00581	gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0235
CLM_0236	CLM_0236		CLM_0236	221804	221880	-	tRNA-Gln		tRNA	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0236
CLM_0237	CLM_0237		CLM_0237	221933	222457	-	putative membrane protein		gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0237
CLM_0238	CLM_0238		CLM_0238	222482	223081	-	molecular chaperone%2C DnaJ family	identified by match to protein family HMM PF00226%3B match to protein family HMM PF07719	gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0238
CLM_0239	CLM_0239		CLM_0239	223068	223943	-	conserved hypothetical protein		gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0239
CLM_0240	CLM_0240		CLM_0240	223947	224486	-	putative adenylyl cyclase CyaB	identified by match to protein family HMM PF01928	gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0240
CLM_0241	CLM_0241		CLM_0241	224793	225830	+	conserved hypothetical protein		gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0241
CLM_0242	CLM_0242	fba	fba	226102	227028	-	fructose-1%2C6-bisphosphate aldolase%2C class II	identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01859	gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0242
CLM_0243	CLM_0243		CLM_0243	227242	227526	-	conserved domain protein		gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0243
CLM_0244	CLM_0244		CLM_0244	227643	228311	-	conserved hypothetical protein	identified by match to protein family HMM PF04239	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0244
CLM_0245	CLM_0245		CLM_0245	228436	230094	+	putative threonyl-tRNA synthetase/uridine kinase	identified by similarity to SP:O32033%3B match to protein family HMM PF00485	gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0245
CLM_0246	CLM_0246		CLM_0246	230232	230363	+	hypothetical protein	identified by glimmer%3B putative	gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0246
CLM_0247	CLM_0247	pssA	pssA	230464	230985	-	CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00473	gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0247
CLM_0248	CLM_0248		CLM_0248	231172	231588	+	CBS domain protein	identified by match to protein family HMM PF00571	gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0248
CLM_0249	CLM_0249		CLM_0249	231694	232578	+	lipid kinase%2C YegS/Rv2252/BmrU family	identified by match to protein family HMM PF00781%3B match to protein family HMM TIGR00147	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0249
CLM_0250	CLM_0250		CLM_0250	232652	233296	+	putative membrane protein		gene	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0250
CLM_0251	CLM_0251		CLM_0251	233620	235557	-	radical SAM domain protein	identified by match to protein family HMM PF04055%3B match to protein family HMM PF08497	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0251
CLM_0253	CLM_0253		CLM_0253	236152	237417	+	PRC-barrel domain/MgtE domain/CBS domain protein	identified by match to protein family HMM PF00571%3B match to protein family HMM PF03448%3B match to protein family HMM PF05239	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0253
CLM_0254	CLM_0254	sleB	sleB	237646	238341	+	spore-cortex-lytic enzyme	identified by match to protein family HMM PF01471%3B match to protein family HMM PF07486%3B match to protein family HMM TIGR02869	gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0254
CLM_0255	CLM_0255	cysK	cysK	238705	239619	+	cysteine synthase A	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139	gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0255
CLM_0256	CLM_0256	cysE	cysE	239634	240230	+	serine O-acetyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM TIGR01172	gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0256
CLM_0257	CLM_0257		CLM_0257	240252	241217	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF08331	gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0257
CLM_0258	CLM_0258	plsD	plsD	241365	242066	+	glycerol-3-phosphate O-acyltransferase	identified by similarity to GB:AAC46006.1%3B match to protein family HMM PF01553	gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0258
CLM_0259	CLM_0259	nth	nth	242159	242800	+	endonuclease III	identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083	gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0259
CLM_0260	CLM_0260		CLM_0260	243075	244247	+	malate dehydrogenase (oxaloacetate-decarboxylating)	identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0260
CLM_0261	CLM_0261		CLM_0261	244274	245503	-	cinA family protein	identified by match to protein family HMM PF00994%3B match to protein family HMM PF02464%3B match to protein family HMM TIGR00177%3B match to protein family HMM TIGR00199%3B match to protein family HMM TIGR00200	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0261
CLM_0262	CLM_0262		CLM_0262	245529	246512	-	conserved hypothetical protein		gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0262
CLM_0263	CLM_0263		CLM_0263	246622	247656	-	glutamyl aminopeptidase family protein	identified by match to protein family HMM PF05343	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0263
CLM_0264	CLM_0264		CLM_0264	247784	248944	+	vanW-like family protein	identified by match to protein family HMM PF04294	gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0264
CLM_0265	CLM_0265		CLM_0265	249149	250501	+	vanW-like family protein	identified by match to protein family HMM PF04294%3B match to protein family HMM PF07501	gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0265
CLM_0266	CLM_0266	splB	splB	250648	251655	+	spore photoproduct lyase	identified by similarity to SP:P37956%3B match to protein family HMM PF04055	gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0266
CLM_0267	CLM_0267		CLM_0267	251783	252250	+	conserved hypothetical protein	identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00185	gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0267
CLM_0268	CLM_0268		CLM_0268	252263	253102	+	DegV family protein	identified by match to protein family HMM PF02645%3B match to protein family HMM TIGR00762	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0268
CLM_0269	CLM_0269		CLM_0269	253396	254499	+	lipoprotein%2C bmp family	identified by match to protein family HMM PF02608	gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0269
CLM_0270	CLM_0270		CLM_0270	254665	256215	+	sugar ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0270
CLM_0271	CLM_0271		CLM_0271	256217	257320	+	sugar ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0271
CLM_0272	CLM_0272		CLM_0272	257313	258239	+	sugar ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0272
CLM_0273	CLM_0273		CLM_0273	258351	259076	+	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0273
CLM_0274	CLM_0274	rpoN	rpoN	259405	260778	+	RNA polymerase sigma-54 factor	identified by match to protein family HMM PF00309%3B match to protein family HMM PF04552%3B match to protein family HMM PF04963%3B match to protein family HMM TIGR02395	gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0274
CLM_0275	CLM_0275	cggR	cggR	261066	262097	+	central glycolytic genes regulator	identified by similarity to SP:O32253%3B match to protein family HMM PF04198	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0275
CLM_0276	CLM_0276	gap	gap	262175	263182	+	glyceraldehyde-3-phosphate dehydrogenase%2C type I	identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534	gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0276
CLM_0277	CLM_0277	pgk	pgk	263479	264675	+	phosphoglycerate kinase	identified by match to protein family HMM PF00162	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0277
CLM_0278	CLM_0278	tpiA	tpiA	264737	265483	+	triose-phosphate isomerase	identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419	gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0278
CLM_0279	CLM_0279	gpmI	gpmI	265575	267104	+	2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase	identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307	gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0279
CLM_0280	CLM_0280	eno	eno	267160	268455	+	phosphopyruvate hydratase	identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0280
CLM_0281	CLM_0281	secG	secG	268678	268911	+	preprotein translocase%2C SecG subunit	identified by match to protein family HMM PF03840%3B match to protein family HMM TIGR00810	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0281
CLM_0282	CLM_0282	rnr	rnr	269120	271297	+	ribonuclease R	identified by match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02063	gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0282
CLM_0283	CLM_0283	surE	surE	271706	272464	+	acid phosphatase SurE	identified by match to protein family HMM PF01975%3B match to protein family HMM TIGR00087	gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0283
CLM_0284	CLM_0284	smpB	smpB	272721	273191	+	SsrA-binding protein	identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086	gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0284
CLM_0285	CLM_0285		CLM_0285	273330	274493	-	sodium:dicarboxylate symporter family protein	identified by match to protein family HMM PF00375	gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0285
CLM_0286	CLM_0286		CLM_0286	275936	276346	-	conserved hypothetical protein		gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0286
CLM_0287	CLM_0287		CLM_0287	276640	277971	+	FAD-binding protein	identified by match to protein family HMM PF01565%3B match to protein family HMM PF08031	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0287
CLM_0288	CLM_0288		CLM_0288	278468	279244	+	SAM-dependent methyltransferase	identified by match to protein family HMM PF03848%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0288
CLM_0289	CLM_0289		CLM_0289	279296	279991	+	cyclic nucleotide-binding protein	identified by match to protein family HMM PF00027	gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0289
CLM_0290	CLM_0290		CLM_0290	280143	280352	+	oxidoreductase%2C FAD/FMN-binding		gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0290
CLM_0291	CLM_0291		CLM_0291	280537	281961	+	putative pyridoxal-dependent decarboxylase	identified by similarity to GB:CAB71551.1%3B match to protein family HMM PF00282	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0291
CLM_0292	CLM_0292		CLM_0292	282149	283000	+		flagellin protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00669	pseudogene	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0292
CLM_0294	CLM_0294		CLM_0294	283359	284975	+	PAP2 family protein	identified by similarity to SP:P81701%3B match to protein family HMM PF01569	gene	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0294
CLM_0295	CLM_0295		CLM_0295	285196	285897	+	regulatory protein VanR	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0295
CLM_0296	CLM_0296		CLM_0296	286025	286945	+	bacitracin transport ATP-binding protein BcrA	identified by match to protein family HMM PF00005	gene	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0296
CLM_0297	CLM_0297		CLM_0297	286938	287690	+	transmembrane protein		gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0297
CLM_0298	CLM_0298		CLM_0298	287778	288686	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0298
CLM_0299	CLM_0299		CLM_0299	288864	289520	+	conserved hypothetical protein	identified by match to protein family HMM PF07883	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0299
CLM_0300	CLM_0300		CLM_0300	289863	290978	+	conserved hypothetical protein		gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0300
CLM_0302	CLM_0302		CLM_0302	291523	292986	+	putative lysine-specific permease	identified by similarity to SP:P25737%3B match to protein family HMM PF00324	gene	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0302
CLM_0303	CLM_0303		CLM_0303	293530	294264	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0303
CLM_0304	CLM_0304		CLM_0304	294378	294890	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0304
CLM_0305	CLM_0305		CLM_0305	294916	295200	+	cytidine/deoxycytidylate deaminase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0305
CLM_0306	CLM_0306		CLM_0306	295463	296365	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0306
CLM_0307	CLM_0307		CLM_0307	296391	296915	+	RibD domain protein	identified by match to protein family HMM PF01872	gene	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0307
CLM_0308	CLM_0308		CLM_0308	296978	297907	+	exonuclease%2C DNA polymerase III%2C epsilon subunit family	identified by match to protein family HMM PF00533%3B match to protein family HMM PF00929%3B match to protein family HMM TIGR00573	gene	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0308
CLM_0309	CLM_0309		CLM_0309	298031	298147	+	hypothetical protein	identified by glimmer%3B putative	gene	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0309
CLM_0310	CLM_0310		CLM_0310	298381	299055	-	isochorismate family protein	identified by match to protein family HMM PF00857	gene	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0310
CLM_0311	CLM_0311		CLM_0311	299237	300513	+		xanthine dehydrogenase family protein%2C molybdopterin-binding subunit%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0311
CLM_0313	CLM_0313		CLM_0313	300513	301004	+	xanthine dehydrogenase family protein%2C FAD-binding subunit		gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0313
CLM_0314	CLM_0314	spoVAE	spoVAE	301181	301534	-	stage V sporulation protein AE	identified by match to protein family HMM PF03862%3B match to protein family HMM TIGR02839	gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0314
CLM_0315	CLM_0315	spoVAD	spoVAD	301557	302558	-	stage V sporulation protein AD	identified by match to protein family HMM PF07451%3B match to protein family HMM TIGR02845	gene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0315
CLM_0316	CLM_0316	spoVAC	spoVAC	302559	303038	-	stage V sporulation protein AC	identified by match to protein family HMM PF03862%3B match to protein family HMM TIGR02838	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0316
CLM_0317	CLM_0317		CLM_0317	303051	303911	-	conserved hypothetical protein	identified by match to protein family HMM PF04239%3B match to protein family HMM PF07870	gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0317
CLM_0318	CLM_0318		CLM_0318	303924	304130	-	conserved domain protein	identified by match to protein family HMM PF07870	gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0318
CLM_0319	CLM_0319		CLM_0319	304369	304572	+	conserved domain protein	identified by match to protein family HMM PF07870	gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0319
CLM_0320	CLM_0320		CLM_0320	305073	305543	+	hypothetical protein	identified by glimmer%3B putative	gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0320
CLM_0321	CLM_0321		CLM_0321	305554	306237	+	DsbD family protein	identified by match to protein family HMM PF02683	gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0321
CLM_0322	CLM_0322		CLM_0322	306259	306825	+	antioxidant%2C AhpC/TSA family	identified by match to protein family HMM PF00085%3B match to protein family HMM PF00578%3B match to protein family HMM PF08534	gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0322
CLM_0323	CLM_0323		CLM_0323	306850	307527	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0323
CLM_0324	CLM_0324		CLM_0324	307664	308917	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0324
CLM_0325	CLM_0325		CLM_0325	308983	310266	-	FAD binding protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01565	gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0325
CLM_0326	CLM_0326		CLM_0326	310577	311902	+	glycosyl hydrolase%2C family 4	identified by match to protein family HMM PF02056	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0326
CLM_0327	CLM_0327		CLM_0327	312064	313587	+	PTS system%2C maltose/glucose-specfic%2C IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378	gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0327
CLM_0328	CLM_0328		CLM_0328	313638	314405	-	transcriptional regulator%2C RpiR family	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0328
CLM_0329	CLM_0329		CLM_0329	314421	315200	-	transcriptional regulator%2C RpiR family	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0329
CLM_0330	CLM_0330		CLM_0330	315476	315958	+	PTS system%2C glucose family%2C EIIA component	identified by match to protein family HMM PF00358%3B match to protein family HMM TIGR00830	gene	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0330
CLM_0331	CLM_0331		CLM_0331	316056	316832	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0331
CLM_0332	CLM_0332		CLM_0332	316842	317891	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0332
CLM_0333	CLM_0333		CLM_0333	318011	318781	+	peptide ABC transporter%2C Pep4E family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0333
CLM_0334	CLM_0334		CLM_0334	318795	320765	+	peptide ABC transporter%2C Pep4E family%2C permease protein	identified by match to protein family HMM PF02687	gene	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0334
CLM_0335	CLM_0335		CLM_0335	321193	322764	+	PTS system%2C glucose/glucoside family%2C IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826	gene	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0335
CLM_0336	CLM_0336	glvA	glvA	323107	324432	+	maltose-6'-phosphate glucosidase	identified by similarity to SP:P54716%3B match to protein family HMM PF02056	gene	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0336
CLM_0337	CLM_0337		CLM_0337	324607	325116	+	PTS system%2C glucose/glucoside family%2C IIA component	identified by match to protein family HMM PF00358%3B match to protein family HMM TIGR00830	gene	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0337
CLM_0338	CLM_0338		CLM_0338	325421	326182	+	SIS domain protein	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0338
CLM_0339	CLM_0339		CLM_0339	326219	326401	-	conserved domain protein		gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0339
CLM_0340	CLM_0340		CLM_0340	326670	326867	+	cold shock protein	identified by match to protein family HMM PF00313	gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0340
CLM_0341	CLM_0341		CLM_0341	327209	327763	+	conserved hypothetical protein	identified by match to protein family HMM PF06210	gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0341
CLM_0342	CLM_0342		CLM_0342	328198	328629	+	rrf2 family protein	identified by match to protein family HMM PF02082	gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0342
CLM_0343	CLM_0343		CLM_0343	328781	329386	+	DSBA-like thioredoxin domain protein	identified by match to protein family HMM PF01323	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0343
CLM_0344	CLM_0344		CLM_0344	329413	330051	+	conserved hypothetical protein		gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0344
CLM_0345	CLM_0345		CLM_0345	330489	331250	+	transcriptional regulator%2C RpiR family	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0345
CLM_0346	CLM_0346		CLM_0346	331369	332952	+	PTS system%2C glucose/maltose-specfic%2C IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826	gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0346
CLM_0347	CLM_0347	glvA	glvA	333348	334682	+	maltose-6'-phosphate glucosidase	identified by similarity to SP:P54716%3B match to protein family HMM PF02056	gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0347
CLM_0348	CLM_0348		CLM_0348	334695	335168	+	PTS system%2C glucose family%2C IIA component	identified by match to protein family HMM PF00358%3B match to protein family HMM TIGR00830	gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0348
CLM_0349	CLM_0349	ilvD	ilvD	335306	337021	+	dihydroxy-acid dehydratase	identified by match to protein family HMM PF00920	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0349
CLM_0350	CLM_0350	eda	eda	337073	337720	+	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0350
CLM_0351	CLM_0351		CLM_0351	337722	338726	+	kinase%2C pfkB family	identified by match to protein family HMM PF00294	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0351
CLM_0352	CLM_0352	ade	ade	338927	340780	+	adenine deaminase	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR01178	gene	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0352
CLM_0353	CLM_0353		CLM_0353	341182	341856	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0353
CLM_0354	CLM_0354		CLM_0354	341853	343241	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0354
CLM_0355	CLM_0355		CLM_0355	343637	344605	+	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0355
CLM_0356	CLM_0356		CLM_0356	344589	345008	+	putative cell wall teichoic acid glycosylation protein GtcA	identified by match to protein family HMM PF04138	gene	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0356
CLM_0357	CLM_0357		CLM_0357	345127	347406	+	dolichyl-phosphate-mannose-protein mannosyltransferase family protein	identified by match to protein family HMM PF02366	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0357
CLM_0358	CLM_0358		CLM_0358	347762	348799	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0358
CLM_0359	CLM_0359		CLM_0359	349064	350095	+	iron chelate uptake ABC transporter%2C FeCT family%2C solute-binding protein	identified by match to protein family HMM PF01497	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0359
CLM_0361	CLM_0361		CLM_0361	350098	351216	+		iron chelate uptake ABC transporter%2C FeCT family%2C permease protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF01032	pseudogene	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0361
CLM_0362	CLM_0362		CLM_0362	351218	351988	+	iron chelate uptake ABC transporter%2C FeCT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0362
CLM_0363	CLM_0363		CLM_0363	352022	353392	+	mate efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0363
CLM_0364	CLM_0364		CLM_0364	353883	353999	+	hypothetical protein	identified by glimmer%3B putative	gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0364
CLM_0365	CLM_0365		CLM_0365	354013	354735	+	4'-phosphopantetheinyl transferase sfp	identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00556	gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0365
CLM_0366	CLM_0366		CLM_0366	354759	355475	+	linear gramicidin dehydrogenase LgrE	identified by match to protein family HMM PF00975	gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0366
CLM_0367	CLM_0367		CLM_0367	355732	356472	+	two component transcriptional regulator%2C LytTR family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0367
CLM_0368	CLM_0368		CLM_0368	356484	357785	+	VirS homolog	identified by similarity to GB:AAA58950.1	gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0368
CLM_0369	CLM_0369		CLM_0369	358533	363017	+	nonribosomal peptide synthetase subunit	identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01720%3B match to protein family HMM TIGR01733	gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0369
CLM_0370	CLM_0370	panD	panD	363192	363575	+	aspartate 1-decarboxylase	identified by match to protein family HMM PF02261%3B match to protein family HMM TIGR00223	gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0370
CLM_0371	CLM_0371		CLM_0371	363732	365243	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0371
CLM_0372	CLM_0372		CLM_0372	365336	365476	+	conserved domain protein	identified by similarity to SP:P33951	gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0372
CLM_0373	CLM_0373		CLM_0373	365497	376245	+	AMP-binding enzyme domain protein	identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01733	gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0373
CLM_0374	CLM_0374		CLM_0374	376355	387913	+	amino acid adenylation domain protein	identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01720%3B match to protein family HMM TIGR01733	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0374
CLM_0375	CLM_0375		CLM_0375	388054	396384	+	bacitracin synthetase 1	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM PF00975%3B match to protein family HMM TIGR01720%3B match to protein family HMM TIGR01733	gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0375
CLM_0376	CLM_0376		CLM_0376	396535	397152	+	mate efflux family protein	identified by match to protein family HMM PF01554	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0376
CLM_0377	CLM_0377		CLM_0377	397285	398256	-	transcriptional regulator%2C AraC family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00165	gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0377
CLM_0378	CLM_0378		CLM_0378	398654	399592	+	iron compound ABC transporter%2C iron compound-binding protein	identified by match to protein family HMM PF01497	gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0378
CLM_0379	CLM_0379		CLM_0379	399795	400823	+	ferrichrome transport system permease protein FhuB	identified by match to protein family HMM PF01032	gene	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0379
CLM_0380	CLM_0380		CLM_0380	400820	401827	+	ferrichrome transport system permease protein FhuG	identified by match to protein family HMM PF01032	gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0380
CLM_0381	CLM_0381		CLM_0381	401861	402685	+	ferrichrome transport ATP-binding protein FhuC	identified by match to protein family HMM PF00005	gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0381
CLM_0382	CLM_0382		CLM_0382	402682	404409	+	lipid A export ATP-binding/permease protein MsbA	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0382
CLM_0384	CLM_0384		CLM_0384	404911	406212	+	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801%3B match to protein family HMM TIGR03173	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0384
CLM_0385	CLM_0385	xpt	xpt	406235	406807	+	xanthine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01744	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0385
CLM_0386	CLM_0386		CLM_0386	407255	407947	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0386
CLM_0387	CLM_0387		CLM_0387	407960	408940	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0387
CLM_0388	CLM_0388	uppP	uppP	409116	409973	+	undecaprenyl-diphosphatase UppP	identified by match to protein family HMM PF02673%3B match to protein family HMM TIGR00753	gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0388
CLM_0389	CLM_0389		CLM_0389	409988	410734	+	peptide ABC transporter%2C Pep4E family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0389
CLM_0390	CLM_0390		CLM_0390	410734	412596	+	peptide ABC transporter%2C Pep4E family%2C permease protein	identified by match to protein family HMM PF02687	gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0390
CLM_0391	CLM_0391		CLM_0391	412721	413128	+	hypothetical protein	identified by glimmer%3B putative	gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0391
CLM_0392	CLM_0392		CLM_0392	413455	413811	+	lrgA family protein	identified by match to protein family HMM PF03788	gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0392
CLM_0393	CLM_0393		CLM_0393	413814	414509	+	lrgB family protein	identified by match to protein family HMM PF04172	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0393
CLM_0394	CLM_0394		CLM_0394	414805	415455	+	putative lipoprotein		gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0394
CLM_0395	CLM_0395		CLM_0395	415824	416723	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0395
CLM_0396	CLM_0396		CLM_0396	416858	418366	+	conserved hypothetical protein	identified by match to protein family HMM PF08903	gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0396
CLM_0397	CLM_0397		CLM_0397	418690	419241	+	conserved hypothetical protein		gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0397
CLM_0398	CLM_0398		CLM_0398	419420	419887	+	putative membrane protein		gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0398
CLM_0399	CLM_0399		CLM_0399	419880	420569	+	putative accessory gene regulator protein B	identified by match to protein family HMM PF04647	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0399
CLM_0400	CLM_0400		CLM_0400	420553	420687	+	putative lipoprotein		gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0400
CLM_0401	CLM_0401		CLM_0401	420759	422462	+	GGDEF/HD domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00254	gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0401
CLM_0402	CLM_0402		CLM_0402	422693	423202	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0402
CLM_0403	CLM_0403		CLM_0403	423600	424052	+	conserved hypothetical protein		gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0403
CLM_0404	CLM_0404		CLM_0404	424079	425926	+	sensory box histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0404
CLM_0405	CLM_0405		CLM_0405	426186	426623	+	putative membrane protein		gene	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0405
CLM_0406	CLM_0406		CLM_0406	426610	427239	+	putative accessory gene regulator protein B	identified by match to protein family HMM PF04647	gene	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0406
CLM_0407	CLM_0407		CLM_0407	427334	427468	+	hypothetical protein	identified by glimmer%3B putative	gene	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0407
CLM_0408	CLM_0408		CLM_0408	427551	429404	+	sensory box histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0408
CLM_0409	CLM_0409		CLM_0409	429636	430502	+	PP-loop family protein	identified by match to protein family HMM PF01171	gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0409
CLM_0410	CLM_0410		CLM_0410	430626	431171	-	DNA-binding protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0410
CLM_0411	CLM_0411		CLM_0411	431526	432932	+	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0411
CLM_0412	CLM_0412		CLM_0412	433051	434133	+	metallopeptidase%2C family M24	identified by match to protein family HMM PF00557	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0412
CLM_0413	CLM_0413	adhE	adhE	434540	437128	+	aldehyde-alcohol dehydrogenase	identified by match to protein family HMM PF00171%3B match to protein family HMM PF00465	gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0413
CLM_0414	CLM_0414		CLM_0414	437447	437734	+	conserved hypothetical protein		gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0414
CLM_0415	CLM_0415		CLM_0415	437797	438387	+	conserved hypothetical protein		gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0415
CLM_0416	CLM_0416		CLM_0416	438673	439152	-	conserved hypothetical protein		gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0416
CLM_0417	CLM_0417		CLM_0417	439400	440410	-	conserved domain protein		gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0417
CLM_0418	CLM_0418		CLM_0418	440514	441041	+	PAP2 family protein	identified by match to protein family HMM PF01569	gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0418
CLM_0419	CLM_0419		CLM_0419	441595	442407	+	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0419
CLM_0420	CLM_0420		CLM_0420	442515	443201	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0420
CLM_0421	CLM_0421		CLM_0421	443211	444605	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0421
CLM_0422	CLM_0422		CLM_0422	444668	446158	+	putative lipoprotein		gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0422
CLM_0423	CLM_0423		CLM_0423	446202	446768	+	conserved hypothetical protein	identified by match to protein family HMM PF06962	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0423
CLM_0424	CLM_0424		CLM_0424	446794	447468	+	DedA family protein	identified by match to protein family HMM PF09335	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0424
CLM_0425	CLM_0425		CLM_0425	447598	450129	-	multisensor diguanylate cyclase/phophodiesterase	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM PF05228%3B match to protein family HMM TIGR00254	gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0425
CLM_0426	CLM_0426		CLM_0426	450474	451661	-	conserved hypothetical protein		gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0426
CLM_0427	CLM_0427		CLM_0427	451914	453254	+	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0427
CLM_0428	CLM_0428		CLM_0428	453446	454012	+	HD domain protein	identified by match to protein family HMM PF01966	gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0428
CLM_0429	CLM_0429		CLM_0429	454324	455592	+	transporter%2C CPA2 family	identified by match to protein family HMM PF00999	gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0429
CLM_0430	CLM_0430		CLM_0430	455727	457049	-	aminotransferase%2C class V	identified by match to protein family HMM PF00266	gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0430
CLM_0431	CLM_0431		CLM_0431	457436	458446	+	putative membrane protein	identified by match to protein family HMM PF03601	gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0431
CLM_0432	CLM_0432		CLM_0432	458577	459251	+	putative membrane protein		gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0432
CLM_0433	CLM_0433		CLM_0433	459197	459895	+	DNA-binding response regulator	identified by match to protein family HMM PF00486	gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0433
CLM_0434	CLM_0434		CLM_0434	459885	461399	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0434
CLM_0435	CLM_0435		CLM_0435	461507	462922	+	sodium:solute symporter family protein	identified by match to protein family HMM PF00474	gene	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0435
CLM_0436	CLM_0436		CLM_0436	464152	465471	+	electron transport complex%2C RnfABCDGE type%2C C subunit	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01945	gene	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0436
CLM_0437	CLM_0437		CLM_0437	465494	466426	+	electron transport complex%2C RnfABCDGE type%2C D subunit	identified by match to protein family HMM PF03116%3B match to protein family HMM TIGR01946	gene	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0437
CLM_0438	CLM_0438		CLM_0438	466426	467097	+	electron transport complex%2C RnfABCDGE type%2C G subunit	identified by match to protein family HMM PF04205%3B match to protein family HMM TIGR01947	gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0438
CLM_0439	CLM_0439		CLM_0439	467108	467710	+	electron transport complex%2C RnfABCDGE type%2C E subunit	identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01948	gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0439
CLM_0440	CLM_0440		CLM_0440	467761	468339	+	electron transport complex%2C RnfABCDGE type%2C A subunit	identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01943	gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0440
CLM_0441	CLM_0441		CLM_0441	468353	469186	+	electron transport complex%2C RnfABCDGE type%2C B subunit	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04060%3B match to protein family HMM TIGR01944	gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0441
CLM_0442	CLM_0442		CLM_0442	469548	470636	+	amidase domain protein	identified by match to protein family HMM PF04122	gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0442
CLM_0443	CLM_0443		CLM_0443	470788	471324	-	putative membrane protein	identified by match to protein family HMM PF07456	gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0443
CLM_0444	CLM_0444		CLM_0444	471342	471734	-	conserved hypothetical protein	identified by match to protein family HMM PF07009	gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0444
CLM_0445	CLM_0445		CLM_0445	471848	472882	-	apbE family protein	identified by match to protein family HMM PF02424	gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0445
CLM_0446	CLM_0446		CLM_0446	473491	477642	+	cell Surface Protein	identified by match to protein family HMM PF04122	gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0446
CLM_0447	CLM_0447		CLM_0447	478128	480197	+	amidase domain protein	identified by match to protein family HMM PF04122%3B match to protein family HMM PF04151	gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0447
CLM_0448	CLM_0448		CLM_0448	480290	480520	+	conserved hypothetical protein		gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0448
CLM_0449	CLM_0449		CLM_0449	480841	485745	+	putative cell surface protein	identified by match to protein family HMM PF04122	gene	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0449
CLM_0450	CLM_0450		CLM_0450	485816	486250	-	hypothetical protein	identified by glimmer%3B putative	gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0450
CLM_0451	CLM_0451		CLM_0451	486567	490079	+	putative cell wall-binding protease	identified by match to protein family HMM PF04122	gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0451
CLM_0452	CLM_0452		CLM_0452	490165	491196	-	acyltransferase family protein		gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0452
CLM_0453	CLM_0453		CLM_0453	491764	493275	+	conserved domain protein		gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0453
CLM_0454	CLM_0454		CLM_0454	493670	494581	+	phosphate uptake ABC transporter%2C PhoT family%2C phosphate-binding protein		gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0454
CLM_0455	CLM_0455		CLM_0455	494786	495649	+	phosphate uptake ABC transporter%2C PhoT family%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02138	gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0455
CLM_0456	CLM_0456		CLM_0456	495685	496515	+	phosphate uptake ABC transporter%2C PhoT family%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974	gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0456
CLM_0457	CLM_0457		CLM_0457	496517	497263	+	phosphate uptake ABC transporter%2C PhoT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0457
CLM_0458	CLM_0458		CLM_0458	497384	497854	+	conserved hypothetical protein		gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0458
CLM_0459	CLM_0459		CLM_0459	498209	499660	+	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0459
CLM_0460	CLM_0460		CLM_0460	499728	500309	-	sporulation lipoprotein%2C YhcN/YlaJ family	identified by match to protein family HMM PF09580%3B match to protein family HMM TIGR02898	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0460
CLM_0461	CLM_0461		CLM_0461	500498	501322	+	conserved hypothetical protein		gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0461
CLM_0462	CLM_0462		CLM_0462	501400	502095	+	conserved hypothetical protein	identified by match to protein family HMM PF01863	gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0462
CLM_0463	CLM_0463		CLM_0463	502182	502520	+	single-strand binding domain protein	identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621	gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0463
CLM_0464	CLM_0464		CLM_0464	502774	503325	+	putative membrane protein	identified by match to protein family HMM PF02659	gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0464
CLM_0465	CLM_0465		CLM_0465	503820	504167	-	exported protein		gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0465
CLM_0466	CLM_0466		CLM_0466	503389	503823	+	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0466
CLM_0467	CLM_0467		CLM_0467	504420	505496	+	HD domain protein	identified by match to protein family HMM PF01966	gene	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0467
CLM_0468	CLM_0468		CLM_0468	505633	506655	+	peptidase%2C S54	identified by match to protein family HMM PF01694	gene	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0468
CLM_0469	CLM_0469		CLM_0469	506825	508879	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0469
CLM_0470	CLM_0470		CLM_0470	509839	511569	-	ATP-dependent metalloprotease	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0470
CLM_0471	CLM_0471		CLM_0471	511789	512844	+	conserved hypothetical protein	identified by match to protein family HMM PF06803	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0471
CLM_0472	CLM_0472	rnhA	rnhA	512819	513268	+	ribonuclease HI	identified by match to protein family HMM PF00075	gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0472
CLM_0473	CLM_0473		CLM_0473	513331	513507	+	hypothetical protein	identified by glimmer%3B putative	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0473
CLM_0474	CLM_0474		CLM_0474	513689	514993	+	tetratricopeptide repeat/DNA binding domain protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF01381	gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0474
CLM_0475	CLM_0475		CLM_0475	515025	516278	+	tetratricopeptide repeat protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0475
CLM_0476	CLM_0476		CLM_0476	516723	516902	+	conserved hypothetical protein		gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0476
CLM_0477	CLM_0477		CLM_0477	516933	517538	+	DJ-1/PfpI family protein	identified by match to protein family HMM PF01965	gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0477
CLM_0478	CLM_0478		CLM_0478	517650	518033	-	conserved hypothetical protein		gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0478
CLM_0479	CLM_0479		CLM_0479	518068	518673	+	conserved hypothetical protein		gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0479
CLM_0480	CLM_0480	clpB	clpB	519037	521637	+	clpB protein	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03346	gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0480
CLM_0481	CLM_0481		CLM_0481	521927	522655	-	glutamine amidotransferase%2C CobB/CobQ family	identified by match to protein family HMM PF07685	gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0481
CLM_0482	CLM_0482		CLM_0482	522713	524074	-	UDP-N-acetylmuramyl tripeptide synthetase homolog	identified by match to protein family HMM PF08245%3B match to protein family HMM PF08353	gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0482
CLM_0483	CLM_0483	manA	manA	524339	525319	+	mannose-6-phosphate isomerase%2C class I	identified by match to protein family HMM PF01238	gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0483
CLM_0484	CLM_0484		CLM_0484	525668	526783	+	putative lipoprotein		gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0484
CLM_0485	CLM_0485		CLM_0485	526891	527745	+	putative undecaprenol kinase	identified by match to protein family HMM PF02673%3B match to protein family HMM TIGR00753	gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0485
CLM_0486	CLM_0486	rrs	rrs	528155	529656	+	16S ribosomal RNA		rRNA	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0486
CLM_0487	CLM_0487		CLM_0487	529799	529876	+	tRNA-Ala		tRNA	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0487
CLM_0488	CLM_0488		CLM_0488	529881	529957	+	tRNA-Ile		tRNA	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0488
CLM_0489	CLM_0489		CLM_0489	531367	531822	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0489
CLM_0490	CLM_0490		CLM_0490	531896	532552	-	conserved hypothetical protein		gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0490
CLM_0492	CLM_0492	rrf	rrf	533064	533180	+	5S ribosomal RNA		rRNA	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0492
CLM_0493	CLM_0493		CLM_0493	533188	533264	+	tRNA-Asn		tRNA	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0493
CLM_0494	CLM_0494		CLM_0494	533717	534580	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0494
CLM_0495	CLM_0495		CLM_0495	534717	535439	+	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553%3B match to protein family HMM TIGR00530	gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0495
CLM_0496	CLM_0496		CLM_0496	536185	537546	+	HMGL-related enzyme	identified by match to protein family HMM PF00682	gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0496
CLM_0497	CLM_0497		CLM_0497	537690	539615	+	aconitase/isopropylmalate dehydratase family protein	identified by match to protein family HMM PF00330%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR01342%3B match to protein family HMM TIGR02087	gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0497
CLM_0498	CLM_0498		CLM_0498	539818	540816	+	dehydrogenase%2C isocitrate/isopropylmalate family	identified by match to protein family HMM PF00180	gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0498
CLM_0499	CLM_0499		CLM_0499	541066	541848	+	polar amino acid uptake family ABC transporter%2C PAAT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0499
CLM_0501	CLM_0501		CLM_0501	542371	544137	+	Na+/H+ antiporter family protein	identified by match to protein family HMM PF03553%3B match to protein family HMM PF03606	gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0501
CLM_0502	CLM_0502		CLM_0502	544164	544379	-	conserved hypothetical protein	identified by match to protein family HMM PF04070	gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0502
CLM_0503	CLM_0503	panD	panD	544467	544850	-	aspartate 1-decarboxylase	identified by match to protein family HMM PF02261%3B match to protein family HMM TIGR00223	gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0503
CLM_0504	CLM_0504	panC	panC	544976	545821	-	pantoate--beta-alanine ligase	identified by match to protein family HMM PF02569%3B match to protein family HMM TIGR00018%3B match to protein family HMM TIGR00125	gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0504
CLM_0505	CLM_0505	panB	panB	545876	546703	-	3-methyl-2-oxobutanoate hydroxymethyltransferase	identified by match to protein family HMM PF02548%3B match to protein family HMM TIGR00222	gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0505
CLM_0506	CLM_0506	addB	addB	547479	550922	+	ATP-dependent nuclease subunit B	identified by match to protein family HMM TIGR02773	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0506
CLM_0507	CLM_0507		CLM_0507	551047	551538	-	conserved hypothetical protein		gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0507
CLM_0508	CLM_0508		CLM_0508	551849	552499	+	tetratricopeptide repeat protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0508
CLM_0509	CLM_0509		CLM_0509	552502	553188	+	conserved hypothetical protein		gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0509
CLM_0510	CLM_0510		CLM_0510	553435	554043	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0510
CLM_0511	CLM_0511	hypB	hypB	554290	554961	+	hydrogenase accessory protein HypB	identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00073	gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0511
CLM_0512	CLM_0512		CLM_0512	555197	557875	+	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0512
CLM_0513	CLM_0513	hypA	hypA	557931	558272	+	hydrogenase nickel insertion protein HypA	identified by match to protein family HMM PF01155	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0513
CLM_0514	CLM_0514		CLM_0514	558310	559296	+	putative membrane protein		gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0514
CLM_0515	CLM_0515		CLM_0515	559581	560069	-	hypothetical protein	identified by glimmer%3B putative	gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0515
CLM_0516	CLM_0516		CLM_0516	560435	561219	+		conserved hypothetical protein%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0516
CLM_0518	CLM_0518	addA	addA	561377	565216	+	ATP-dependent nuclease subunit A	identified by similarity to SP:P23478%3B match to protein family HMM PF00580%3B match to protein family HMM TIGR02785	gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0518
CLM_0519	CLM_0519		CLM_0519	565356	567047	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0519
CLM_0520	CLM_0520	pepT	pepT	567124	568350	+	peptidase T	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01882	gene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0520
CLM_0521	CLM_0521		CLM_0521	568625	569557	-	phospholipase family protein	identified by match to protein family HMM PF01734	gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0521
CLM_0522	CLM_0522		CLM_0522	570201	570851	+	metallo-beta-lactamase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0522
CLM_0523	CLM_0523		CLM_0523	571057	571515	+	glyoxalase	identified by match to protein family HMM PF00903	gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0523
CLM_0524	CLM_0524		CLM_0524	571565	571963	+	acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0524
CLM_0525	CLM_0525		CLM_0525	572068	572289	+	conserved hypothetical protein		gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0525
CLM_0526	CLM_0526		CLM_0526	572502	573917	+	N-acetylmuramoyl-L-alanine amidase homolog	identified by match to protein family HMM PF04122	gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0526
CLM_0527	CLM_0527		CLM_0527	574181	574816	-	amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0527
CLM_0528	CLM_0528		CLM_0528	574829	575632	-	polar amino acid uptake ABC transporter%2C PAAT family%2C amino acid-binding protein	identified by match to protein family HMM PF00497	gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0528
CLM_0529	CLM_0529		CLM_0529	575854	576582	+	conserved domain protein	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0529
CLM_0530	CLM_0530		CLM_0530	576931	578142	-	EAL domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF08668	gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0530
CLM_0531	CLM_0531	thiE	thiE	578407	579024	-	thiamine-phosphate diphosphorylase	identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00693	gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0531
CLM_0532	CLM_0532	thiM	thiM	579015	579806	-	hydroxyethylthiazole kinase	identified by match to protein family HMM PF02110%3B match to protein family HMM TIGR00694	gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0532
CLM_0533	CLM_0533	thiD	thiD	580037	580837	-	phosphomethylpyrimidine kinase	identified by match to protein family HMM PF08543%3B match to protein family HMM TIGR00097	gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0533
CLM_0535	CLM_0535	ddlB	ddlB	581862	582764	+	D-alanine--D-alanine ligase	identified by match to protein family HMM PF01071%3B match to protein family HMM PF01820%3B match to protein family HMM PF02655%3B match to protein family HMM PF07478%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR01205	gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0535
CLM_0536	CLM_0536		CLM_0536	582920	584062	+	putative high-affinity branched-chain amino acid ABC transporter%2C amino acid-binding protein	identified by match to protein family HMM PF01094	gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0536
CLM_0537	CLM_0537		CLM_0537	584066	584938	+	high-affinity branched-chain amino acid ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0537
CLM_0538	CLM_0538		CLM_0538	584939	585883	+	putative high-affinity branched-chain amino acid ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0538
CLM_0539	CLM_0539		CLM_0539	585895	586632	+	putative high-affinity branched chain amino acid ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0539
CLM_0540	CLM_0540		CLM_0540	586634	587335	+	putative high-affinity branched chain amino acid ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0540
CLM_0541	CLM_0541		CLM_0541	587364	588140	+	conserved hypothetical protein	identified by match to protein family HMM PF02596	gene	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0541
CLM_0542	CLM_0542		CLM_0542	588542	589300	+	conserved hypothetical protein	identified by match to protein family HMM PF06738	gene	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0542
CLM_0543	CLM_0543		CLM_0543	589294	589737	+	conserved hypothetical protein		gene	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0543
CLM_0544	CLM_0544		CLM_0544	589879	591330	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0544
CLM_0545	CLM_0545		CLM_0545	591391	591960	+	lemA family protein	identified by match to protein family HMM PF04011	gene	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0545
CLM_0546	CLM_0546		CLM_0546	591970	592806	+	putative lipoprotein	identified by match to protein family HMM PF04536	gene	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0546
CLM_0547	CLM_0547		CLM_0547	593324	594184	+	conserved hypothetical protein	identified by match to protein family HMM PF04536	gene	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0547
CLM_0548	CLM_0548		CLM_0548	594458	595351	+	hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0548
CLM_0549	CLM_0549		CLM_0549	595485	595967	+	hypothetical protein	identified by glimmer%3B putative	gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0549
CLM_0550	CLM_0550		CLM_0550	596143	596667	+	putative membrane protein		gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0550
CLM_0551	CLM_0551		CLM_0551	596669	597259	+	methlytransferase%2C homolog	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0551
CLM_0552	CLM_0552		CLM_0552	597345	597584	-	conserved hypothetical protein		gene	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0552
CLM_0553	CLM_0553		CLM_0553	597605	597799	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0553
CLM_0554	CLM_0554		CLM_0554	598300	598434	+	hypothetical protein	identified by glimmer%3B putative	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0554
CLM_0555	CLM_0555	sbcD	sbcD	598681	599910	+	exonuclease SbcCD%2C D subunit	identified by similarity to SP:P13457%3B match to protein family HMM PF00149%3B match to protein family HMM TIGR00619	gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0555
CLM_0556	CLM_0556	sbcC	sbcC	599885	603415	+	exonuclease SbcCD%2C C subunit	identified by similarity to SP:P13458%3B match to protein family HMM PF02463	gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0556
CLM_0557	CLM_0557		CLM_0557	603443	603991	+	hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293	gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0557
CLM_0558	CLM_0558		CLM_0558	604820	605671	+	putative membrane protein	identified by match to protein family HMM PF02588	gene	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0558
CLM_0559	CLM_0559		CLM_0559	605766	605927	-	conserved domain protein	identified by match to protein family HMM PF07561	gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0559
CLM_0560	CLM_0560		CLM_0560	606140	606505	+	putative cadmium resistance transcriptional regulator CadC	identified by match to protein family HMM PF01022	gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0560
CLM_0561	CLM_0561	cadA	cadA	606581	608797	+	cadmium-exporting ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525	gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0561
CLM_0562	CLM_0562		CLM_0562	609217	609291	+	tRNA-Glu		tRNA	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0562
CLM_0563	CLM_0563		CLM_0563	610017	610838	+	NlpC/P60 family protein	identified by match to protein family HMM PF00877%3B match to protein family HMM PF01471	gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0563
CLM_0564	CLM_0564		CLM_0564	610971	611114	+	recombinase%2C phage RecT family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0564
CLM_0565	CLM_0565		CLM_0565	611153	611353	+	conserved hypothetical protein		gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0565
CLM_0566	CLM_0566		CLM_0566	611881	612228	+	conserved hypothetical protein		gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0566
CLM_0567	CLM_0567		CLM_0567	612247	612396	-	conserved hypothetical protein		gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0567
CLM_0568	CLM_0568		CLM_0568	612907	613716	+	conserved hypothetical protein		gene	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0568
CLM_0569	CLM_0569		CLM_0569	614355	615731	+	PhoH family protein	identified by match to protein family HMM PF02562	gene	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0569
CLM_0570	CLM_0570		CLM_0570	615999	617003	+	conserved hypothetical protein		gene	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0570
CLM_0571	CLM_0571		CLM_0571	617013	618029	+	conserved hypothetical protein		gene	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0571
CLM_0572	CLM_0572		CLM_0572	618349	618522	+	bacteriocin protoxin%2C streptolysin S family		gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0572
CLM_0573	CLM_0573	sagB	sagB	618687	619643	+	streptolysin associated protein SagB	identified by similarity to GB:AAN16972.1%3B match to protein family HMM TIGR03605	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0573
CLM_0574	CLM_0574		CLM_0574	619647	620729	+	bacteriocin biosynthesis cyclodehydratase%2C SagC family	identified by match to protein family HMM TIGR03603	gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0574
CLM_0575	CLM_0575	sagD	sagD	620745	622103	+	streptolysin associated protein SagD	identified by match to protein family HMM PF02624%3B match to protein family HMM TIGR03604	gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0575
CLM_0576	CLM_0576		CLM_0576	622078	622716	+	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0576
CLM_0577	CLM_0577		CLM_0577	622724	623452	+	putative membrane protein		gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0577
CLM_0578	CLM_0578	sagG	sagG	623761	624693	+	ABC transporter%2C ATP-binding protein SagG	identified by similarity to GB:AAN16977.1%3B match to protein family HMM PF00005	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0578
CLM_0580	CLM_0580	sagH	sagH	624705	625829	+	ABC transporter%2C ATP-binding/permease protein SagH	identified by match to protein family HMM PF01061	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0580
CLM_0581	CLM_0581	sagI	sagI	625831	626973	+	drug ABC tranporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF01061	gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0581
CLM_0582	CLM_0582		CLM_0582	627217	627867	+	putative metalloprotease	identified by match to protein family HMM PF02163	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0582
CLM_0583	CLM_0583		CLM_0583	628120	629211	+	sensor histidine kinase	identified by match to protein family HMM PF07730	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0583
CLM_0584	CLM_0584		CLM_0584	629377	630009	+	DNA-binding response regulator%2C LuxR family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0584
CLM_0585	CLM_0585		CLM_0585	630431	631366	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0585
CLM_0586	CLM_0586		CLM_0586	631378	632496	+	multidrug ABC transporter%2C permease	identified by match to protein family HMM PF01061	gene	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0586
CLM_0587	CLM_0587		CLM_0587	632496	633644	+	ABC-type multidrug transport system%2C permease component	identified by match to protein family HMM PF01061	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0587
CLM_0588	CLM_0588		CLM_0588	633763	634233	-	hypothetical protein	identified by glimmer%3B putative	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0588
CLM_0589	CLM_0589		CLM_0589	634351	635613	-	arsenical pump family protein	identified by match to protein family HMM PF02040%3B match to protein family HMM PF03600	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0589
CLM_0590	CLM_0590		CLM_0590	635740	637104	-	conserved domain protein		gene	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0590
CLM_0591	CLM_0591	trmB	trmB	637380	638033	+	tRNA (guanine-N(7)-)-methyltransferase	identified by match to protein family HMM PF02390%3B match to protein family HMM TIGR00091	gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0591
CLM_0592	CLM_0592		CLM_0592	638246	638509	+	conserved hypothetical protein		gene	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0592
CLM_0593	CLM_0593		CLM_0593	638604	639098	-	putative thiol peroxidase	identified by match to protein family HMM PF00578%3B match to protein family HMM PF08534	gene	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0593
CLM_0594	CLM_0594		CLM_0594	639480	640223	+	oxidoreductase%2C short chain dehydrogenase/reductase family protein	identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659	gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0594
CLM_0595	CLM_0595		CLM_0595	640286	641239	+	response regulator	identified by match to protein family HMM PF00072	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0595
CLM_0596	CLM_0596		CLM_0596	641363	643687	-	NlpC/P60 family protein	identified by match to protein family HMM PF00877%3B match to protein family HMM PF05257%3B match to protein family HMM PF06347%3B match to protein family HMM PF08239	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0596
CLM_0597	CLM_0597		CLM_0597	643996	644940	+	hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0597
CLM_0598	CLM_0598		CLM_0598	645202	646449	+	response regulator	identified by match to protein family HMM PF00072	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0598
CLM_0599	CLM_0599		CLM_0599	646746	647330	+	HDIG domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0599
CLM_0600	CLM_0600		CLM_0600	647366	649396	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0600
CLM_0601	CLM_0601		CLM_0601	649601	650395	+	response regulator	identified by match to protein family HMM PF00072	gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0601
CLM_0602	CLM_0602	serS	serS	650877	652154	+	serine--tRNA ligase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414	gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0602
CLM_0603	CLM_0603		CLM_0603	652749	655103	+	putative ATP-dependent helicase	identified by match to protein family HMM PF06733	gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0603
CLM_0604	CLM_0604		CLM_0604	655388	655579	-	conserved hypothetical protein		gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0604
CLM_0605	CLM_0605		CLM_0605	656072	656692	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF02080	gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0605
CLM_0606	CLM_0606	ceo	ceo	656947	657900	+	N(5)-(carboxyethyl)ornithine synthase	identified by match to protein family HMM PF01262	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0606
CLM_0607	CLM_0607		CLM_0607	658104	660110	-	fructose-1%2C6-bisphosphatase	identified by match to protein family HMM PF06874	gene	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0607
CLM_0608	CLM_0608		CLM_0608	660394	660756	+	hypothetical protein	identified by glimmer%3B putative	gene	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0608
CLM_0609	CLM_0609		CLM_0609	660957	661370	+	hemerythrin-like metal-binding domain protein	identified by match to protein family HMM PF01814%3B match to protein family HMM TIGR02481	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0609
CLM_0610	CLM_0610		CLM_0610	661582	662277	-	hypothetical protein	identified by glimmer%3B putative	gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0610
CLM_0611	CLM_0611		CLM_0611	663029	663451	+	hypothetical protein	identified by glimmer%3B putative	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0611
CLM_0612	CLM_0612		CLM_0612	663684	664334	-	superoxide dismutase%2C Mn/Fe family	identified by match to protein family HMM PF02777	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0612
CLM_0613	CLM_0613		CLM_0613	664527	665366	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0613
CLM_0614	CLM_0614		CLM_0614	666023	667264	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0614
CLM_0615	CLM_0615		CLM_0615	667302	668339	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0615
CLM_0616	CLM_0616		CLM_0616	668546	668722	+	hypothetical protein	identified by glimmer%3B putative	gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0616
CLM_0617	CLM_0617		CLM_0617	668752	668925	+	hypothetical protein	identified by glimmer%3B putative	gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0617
CLM_0618	CLM_0618		CLM_0618	669123	670118	+	putative serine protease		gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0618
CLM_0619	CLM_0619		CLM_0619	670105	671814	+	lipid A export ATP-binding/permease protein MsbA	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0619
CLM_0620	CLM_0620		CLM_0620	671859	672545	+	regulatory protein VanR	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0620
CLM_0621	CLM_0621		CLM_0621	672542	673573	+	two-component sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0621
CLM_0622	CLM_0622		CLM_0622	673759	674424	+	macrolide export ATP-binding/permease protein MacB	identified by match to protein family HMM PF00005	gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0622
CLM_0623	CLM_0623		CLM_0623	674438	676948	+	efflux ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0623
CLM_0624	CLM_0624		CLM_0624	677997	678296	-	conserved hypothetical protein		gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0624
CLM_0625	CLM_0625		CLM_0625	678444	680297	-	putative membrane protein		gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0625
CLM_0626	CLM_0626		CLM_0626	680570	680689	+	conserved domain protein		gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0626
CLM_0627	CLM_0627		CLM_0627	680977	681441	-	transcriptional regulator%2C AsnC family	identified by match to protein family HMM PF01037	gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0627
CLM_0628	CLM_0628		CLM_0628	681966	682340	+	conserved hypothetical protein		gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0628
CLM_0629	CLM_0629		CLM_0629	682964	684337	+	amino acid permease family protein	identified by match to protein family HMM PF00324%3B match to protein family HMM PF03845	gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0629
CLM_0630	CLM_0630		CLM_0630	684775	686124	+	amino acid permease family protein	identified by match to protein family HMM PF00324%3B match to protein family HMM PF03845	gene	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0630
CLM_0631	CLM_0631		CLM_0631	686472	686981	+	bacterial transferase%2C hexapeptide repeat family	identified by match to protein family HMM PF00132	gene	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0631
CLM_0632	CLM_0632		CLM_0632	687026	687898	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0632
CLM_0633	CLM_0633		CLM_0633	688167	690785	-	calcium-translocating P-type ATPase%2C PMCA-type	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01517	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0633
CLM_0635	CLM_0635		CLM_0635	691079	691615	-	chromate transporter protein	identified by match to protein family HMM PF02417	gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0635
CLM_0636	CLM_0636		CLM_0636	691615	692151	-	chromate transport protein	identified by match to protein family HMM PF02417	gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0636
CLM_0637	CLM_0637		CLM_0637	692325	692915	+	PemK family protein	identified by match to protein family HMM PF02452	gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0637
CLM_0638	CLM_0638		CLM_0638	693362	693787	+	conserved hypothetical protein	identified by match to protein family HMM PF03885	gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0638
CLM_0639	CLM_0639	nadE	nadE	693993	695909	-	glutamine-dependent NAD(+) synthetase	identified by similarity to SP:P0A5L6%3B match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552	gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0639
CLM_0640	CLM_0640		CLM_0640	696131	696571	+	conserved hypothetical protein	identified by match to protein family HMM PF01957	gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0640
CLM_0641	CLM_0641		CLM_0641	696574	697512	+	SPFH domain/Band 7 family protein	identified by match to protein family HMM PF01145	gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0641
CLM_0642	CLM_0642		CLM_0642	697558	697698	+	conserved hypothetical protein		gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0642
CLM_0643	CLM_0643	pepP	pepP	698169	699404	+	Xaa-pro aminopeptidase	identified by match to protein family HMM PF00557%3B match to protein family HMM PF05195	gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0643
CLM_0644	CLM_0644		CLM_0644	700057	700506	-	putative membrane protein		gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0644
CLM_0645	CLM_0645		CLM_0645	700924	701127	-	conserved domain protein	identified by match to protein family HMM PF01381	gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0645
CLM_0646	CLM_0646		CLM_0646	701276	701725	-	acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0646
CLM_0647	CLM_0647		CLM_0647	702120	702332	+	[2Fe-2S]-binding domain protein	identified by match to protein family HMM PF04324	gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0647
CLM_0648	CLM_0648		CLM_0648	702804	702941	+	hypothetical protein	identified by glimmer%3B putative	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0648
CLM_0649	CLM_0649		CLM_0649	703123	703197	+	hypothetical protein	identified by glimmer%3B putative	gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0649
CLM_0650	CLM_0650		CLM_0650	703296	704204	+	conserved hypothetical protein		gene	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0650
CLM_0651	CLM_0651		CLM_0651	704472	704981	+	hypothetical protein	identified by glimmer%3B putative	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0651
CLM_0652	CLM_0652		CLM_0652	704993	706636	+	carbon starvation protein CstA	identified by match to protein family HMM PF02554	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0652
CLM_0653	CLM_0653		CLM_0653	707218	707907	+	conserved hypothetical protein		gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0653
CLM_0654	CLM_0654		CLM_0654	708827	710818	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0654
CLM_0655	CLM_0655		CLM_0655	711322	712980	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0655
CLM_0656	CLM_0656	mscL	mscL	713456	713857	+	large conductance mechanosensitive channel protein	identified by match to protein family HMM PF01741%3B match to protein family HMM TIGR00220	gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0656
CLM_0658	CLM_0658		CLM_0658	714096	714779	+	probable proton-coupled thiamine transporter YuaJ	identified by match to protein family HMM PF09515%3B match to protein family HMM TIGR02357	gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0658
CLM_0659	CLM_0659		CLM_0659	714912	715049	-	conserved domain protein		gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0659
CLM_0660	CLM_0660		CLM_0660	715697	716848	+	SEC-C motif domain protein	identified by match to protein family HMM PF02810	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0660
CLM_0661	CLM_0661		CLM_0661	717150	717530	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0661
CLM_0662	CLM_0662		CLM_0662	717523	718218	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0662
CLM_0663	CLM_0663		CLM_0663	718218	718979	+	putative ABC transporter%2C permease protein		gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0663
CLM_0664	CLM_0664		CLM_0664	719338	720440	+		methyl-accepting chemotaxis protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0664
CLM_0665	CLM_0665	potA	potA	721243	722325	+	spermidine/putrescine ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08402%3B match to protein family HMM TIGR01187	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0665
CLM_0666	CLM_0666	potB	potB	722325	723284	+	spermidine/putrescine ABC transporter%2C permease protein PotB	identified by similarity to SP:P0AFK4%3B match to protein family HMM PF00528	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0666
CLM_0667	CLM_0667	potCD	potCD	723284	725128	+	spermidine/putrescine transport system permease protein PotC/spermidine/putrescine-binding periplasmic protein PotD	identified by similarity to SP:P0AFK6%3B similarity to SP:P0AFK9%3B match to protein family HMM PF00528%3B match to protein family HMM PF01547	gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0667
CLM_0668	CLM_0668		CLM_0668	725337	726206	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene641	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0668
CLM_0669	CLM_0669		CLM_0669	726320	726463	+	hypothetical protein	identified by glimmer%3B putative	gene	gene642	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0669
CLM_0670	CLM_0670		CLM_0670	726645	727898	+	proton/sodium-glutamate symporter	identified by similarity to SP:P24943%3B match to protein family HMM PF00375	gene	gene643	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0670
CLM_0671	CLM_0671		CLM_0671	728491	729051	+	hypothetical protein	identified by glimmer%3B putative	gene	gene644	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0671
CLM_0672	CLM_0672		CLM_0672	729287	729616	+	hypothetical protein	identified by glimmer%3B putative	gene	gene645	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0672
CLM_0673	CLM_0673		CLM_0673	729699	730253	+	hypothetical protein	identified by glimmer%3B putative	gene	gene646	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0673
CLM_0674	CLM_0674		CLM_0674	730318	732405	-	YbfG	identified by match to protein family HMM PF01471%3B match to protein family HMM PF08924	gene	gene647	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0674
CLM_0675	CLM_0675		CLM_0675	732747	732929	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene648	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0675
CLM_0676	CLM_0676		CLM_0676	733343	733546	+	conserved domain protein		gene	gene649	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0676
CLM_0678	CLM_0678		CLM_0678	733677	733961	+		hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by glimmer%3B putative	pseudogene	gene650	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0678
CLM_0679	CLM_0679		CLM_0679	733965	734969	+	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene651	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0679
CLM_0680	CLM_0680		CLM_0680	735362	736210	-	pentapeptide repeat family protein	identified by match to protein family HMM PF00805	gene	gene652	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0680
CLM_0681	CLM_0681		CLM_0681	736534	736695	-	conserved hypothetical protein		gene	gene653	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0681
CLM_0682	CLM_0682		CLM_0682	736649	736999	+		tRNA-binding domain protein%3B this gene represents a fragment of a known gene%3B identified by match to protein family HMM PF01588	pseudogene	gene654	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0682
CLM_0683	CLM_0683		CLM_0683	737220	737432	+	conserved domain protein	identified by match to protein family HMM PF01381	gene	gene655	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0683
CLM_0684	CLM_0684		CLM_0684	737422	737859	+	conserved hypothetical protein		gene	gene656	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0684
CLM_0685	CLM_0685	lepB	lepB	737927	738535	+	signal peptidase I	identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR02227	gene	gene657	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0685
CLM_0686	CLM_0686		CLM_0686	739351	740052	+	DNA-binding response regulator%2C LytTr family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene658	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0686
CLM_0687	CLM_0687		CLM_0687	740665	740784	+	hypothetical protein	identified by glimmer%3B putative	gene	gene659	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0687
CLM_0688	CLM_0688		CLM_0688	740824	740949	+	hypothetical protein	identified by glimmer%3B putative	gene	gene660	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0688
CLM_0689	CLM_0689		CLM_0689	741647	741793	+	hypothetical protein	identified by glimmer%3B putative	gene	gene661	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0689
CLM_0690	CLM_0690		CLM_0690	741827	741946	+	conserved hypothetical protein		gene	gene662	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0690
CLM_0691	CLM_0691		CLM_0691	742372	743724	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene663	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0691
CLM_0692	CLM_0692		CLM_0692	743717	744307	+	hypothetical protein	identified by glimmer%3B putative	gene	gene664	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0692
CLM_0693	CLM_0693		CLM_0693	744344	744841	+	conserved domain protein		gene	gene665	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0693
CLM_0694	CLM_0694		CLM_0694	744876	746588	+	putative ABC transporter%2C ATP-binding protein/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF02463	gene	gene666	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0694
CLM_0695	CLM_0695		CLM_0695	746622	747371	+	putative lipoprotein		gene	gene667	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0695
CLM_0696	CLM_0696		CLM_0696	747394	747873	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene668	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0696
CLM_0697	CLM_0697		CLM_0697	747870	750338	+	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene669	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0697
CLM_0698	CLM_0698		CLM_0698	750353	751033	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene670	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0698
CLM_0699	CLM_0699		CLM_0699	751601	751864	+	conserved hypothetical protein		gene	gene671	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0699
CLM_0700	CLM_0700		CLM_0700	752193	753059	+	degV family protein	identified by match to protein family HMM PF02645%3B match to protein family HMM TIGR00762	gene	gene672	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0700
CLM_0701	CLM_0701		CLM_0701	753457	753969	+	conserved hypothetical protein		gene	gene673	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0701
CLM_0702	CLM_0702		CLM_0702	754016	754132	-	conserved domain protein		gene	gene674	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0702
CLM_0703	CLM_0703		CLM_0703	754465	756375	+	sulfatase family protein	identified by match to protein family HMM PF00884	gene	gene675	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0703
CLM_0704	CLM_0704		CLM_0704	756642	758054	-	sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene676	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0704
CLM_0705	CLM_0705		CLM_0705	758388	759611	-	nucleoside transporter%2C NupC family	identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804	gene	gene677	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0705
CLM_0706	CLM_0706	asnS	asnS	760919	762310	+	asparagine--tRNA ligase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00457	gene	gene678	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0706
CLM_0707	CLM_0707		CLM_0707	762584	763039	+	transcriptional regulator%2C LytR family	identified by match to protein family HMM PF04397	gene	gene679	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0707
CLM_0708	CLM_0708		CLM_0708	763041	763739	+	conserved hypothetical protein		gene	gene680	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0708
CLM_0709	CLM_0709		CLM_0709	764161	765048	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene681	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0709
CLM_0710	CLM_0710		CLM_0710	765068	765190	-	integrase%2C catalytic region	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene682	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0710
CLM_0711	CLM_0711		CLM_0711	765484	766395	+	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene683	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0711
CLM_0712	CLM_0712		CLM_0712	766408	766800	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene684	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0712
CLM_0713	CLM_0713		CLM_0713	767263	768357	+	putative lipoprotein		gene	gene685	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0713
CLM_0714	CLM_0714		CLM_0714	768532	769215	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene686	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0714
CLM_0715	CLM_0715		CLM_0715	769220	770641	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene687	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0715
CLM_0716	CLM_0716		CLM_0716	770766	770939	-	hypothetical protein	identified by glimmer%3B putative	gene	gene688	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0716
CLM_0717	CLM_0717		CLM_0717	771139	771855	+	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF02557	gene	gene689	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0717
CLM_0718	CLM_0718		CLM_0718	771876	772568	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene690	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0718
CLM_0719	CLM_0719		CLM_0719	772597	773679	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene691	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0719
CLM_0720	CLM_0720		CLM_0720	773839	774978	-	putative membrane protein		gene	gene692	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0720
CLM_0721	CLM_0721		CLM_0721	775121	775933	-	response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF08664	gene	gene693	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0721
CLM_0722	CLM_0722		CLM_0722	775930	777228	-	sensor histidine kinase	identified by match to protein family HMM PF02518	gene	gene694	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0722
CLM_0723	CLM_0723	rodA	rodA	777626	778786	+	rod shape-determining protein RodA	identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02210	gene	gene695	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0723
CLM_0724	CLM_0724	cfa	cfa	779224	780402	-	cyclopropane-fatty-acyl-phospholipid synthase	identified by match to protein family HMM PF02353%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene696	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0724
CLM_0725	CLM_0725		CLM_0725	780730	781761	+	hypothetical protein	identified by glimmer%3B putative	gene	gene697	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0725
CLM_0726	CLM_0726		CLM_0726	781931	783610	+	putative ABC transporter%2C ATP-binding protein/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene698	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0726
CLM_0727	CLM_0727		CLM_0727	783848	784474	-	chloramphenicol acetyltransferase family protein	identified by match to protein family HMM PF00302	gene	gene699	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0727
CLM_0728	CLM_0728		CLM_0728	784645	785262	+	transcriptional regulator%2C TetR family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00440	gene	gene700	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0728
CLM_0729	CLM_0729		CLM_0729	785365	785835	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene701	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0729
CLM_0730	CLM_0730	csaA	csaA	785902	786231	-	CsaA protein	identified by similarity to SP:P37584%3B match to protein family HMM PF01588%3B match to protein family HMM TIGR02222	gene	gene702	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0730
CLM_0731	CLM_0731		CLM_0731	786439	787164	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene703	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0731
CLM_0732	CLM_0732		CLM_0732	787464	788015	-	cupin domain protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene704	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0732
CLM_0733	CLM_0733		CLM_0733	788272	788862	+	HDIG domain protein	identified by match to protein family HMM TIGR00277	gene	gene705	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0733
CLM_0734	CLM_0734		CLM_0734	789248	790006	+	transcriptional regulator%2C LytR family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF04397	gene	gene706	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0734
CLM_0735	CLM_0735		CLM_0735	790389	791234	+	bacitracin transport ATP-binding protein BcrA	identified by match to protein family HMM PF00005	gene	gene707	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0735
CLM_0736	CLM_0736		CLM_0736	791234	791965	+	hypothetical protein	identified by glimmer%3B putative	gene	gene708	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0736
CLM_0737	CLM_0737	atcC	atcC	792179	793402	-	N-carbamyl-L-cysteine amidohydrolase	identified by similarity to GB:BAB78482.1%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01879	gene	gene709	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0737
CLM_0738	CLM_0738		CLM_0738	793963	794349	+	lactoylglutathione lyase	identified by match to protein family HMM PF00903	gene	gene710	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0738
CLM_0739	CLM_0739		CLM_0739	794694	796589	+	MutS domain protein	identified by match to protein family HMM PF00488	gene	gene711	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0739
CLM_0740	CLM_0740		CLM_0740	796697	797290	+		tetratricopeptide repeat protein%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene712	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0740
CLM_0741	CLM_0741		CLM_0741	797422	797772	+	conserved domain protein	identified by similarity to GB:CAL82185.1	gene	gene713	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0741
CLM_0742	CLM_0742		CLM_0742	797859	798332	-	putative 5-nitroimidazole antibiotic resistance protein	identified by similarity to GB:CAA50578.1%3B match to protein family HMM PF01243	gene	gene714	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0742
CLM_0743	CLM_0743		CLM_0743	798355	798768	-	conserved hypothetical protein	identified by match to protein family HMM PF04304	gene	gene715	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0743
CLM_0744	CLM_0744		CLM_0744	798738	798857	-	membrane protein		gene	gene716	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0744
CLM_0745	CLM_0745		CLM_0745	799393	799887	+	pyridoxamine 5'-phosphate oxidase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01243	gene	gene717	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0745
CLM_0746	CLM_0746		CLM_0746	800095	800406	-	conserved domain protein		gene	gene718	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0746
CLM_0747	CLM_0747		CLM_0747	800545	801954	-	transcriptional regulator%2C GntR family/aminotransferase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene719	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0747
CLM_0748	CLM_0748		CLM_0748	802147	802455	+	conserved hypothetical protein		gene	gene720	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0748
CLM_0749	CLM_0749	rhlE	rhlE	802857	804134	+	ATP-dependent RNA helicase RhlE	identified by similarity to SP:P25888%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene721	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0749
CLM_0750	CLM_0750		CLM_0750	804733	805221	+	putative rubrerythrin	identified by match to protein family HMM PF02915	gene	gene722	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0750
CLM_0751	CLM_0751		CLM_0751	805391	805828	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene723	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0751
CLM_0752	CLM_0752		CLM_0752	805856	807289	+	drug resistance transporter%2C EmrB/QacA family	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711	gene	gene724	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0752
CLM_0753	CLM_0753		CLM_0753	807411	808601	-	conserved hypothetical protein		gene	gene725	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0753
CLM_0754	CLM_0754		CLM_0754	808726	809601	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene726	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0754
CLM_0755	CLM_0755		CLM_0755	809640	811214	+	conserved hypothetical protein	identified by match to protein family HMM PF08011	gene	gene727	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0755
CLM_0756	CLM_0756		CLM_0756	811398	811619	+	hypothetical protein	identified by glimmer%3B putative	gene	gene728	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0756
CLM_0757	CLM_0757		CLM_0757	811609	811926	+	conserved domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene729	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0757
CLM_0758	CLM_0758		CLM_0758	811993	812661	+	putative SanA protein	identified by similarity to SP:P0AFY2%3B match to protein family HMM PF02698	gene	gene730	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0758
CLM_0759	CLM_0759		CLM_0759	812791	815757	+		restriction/helicase domain protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851	pseudogene	gene731	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0759
CLM_0761	CLM_0761		CLM_0761	815797	816195	-	putative mutator mutT protein	identified by match to protein family HMM PF00293	gene	gene732	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0761
CLM_0762	CLM_0762		CLM_0762	816551	817801	+	conserved hypothetical protein		gene	gene733	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0762
CLM_0763	CLM_0763		CLM_0763	818195	821743	+	hypothetical protein	identified by glimmer%3B putative	gene	gene734	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0763
CLM_0764	CLM_0764		CLM_0764	821769	824489	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene735	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0764
CLM_0765	CLM_0765		CLM_0765	824517	825254	-	hypothetical protein	identified by glimmer%3B putative	gene	gene736	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0765
CLM_0766	CLM_0766		CLM_0766	825653	826144	-	conserved hypothetical protein		gene	gene737	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0766
CLM_0767	CLM_0767	licT	licT	826616	827455	+	transcriptional antiterminator%2C LicT	identified by similarity to SP:P39805%3B match to protein family HMM PF00874%3B match to protein family HMM PF03123	gene	gene738	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0767
CLM_0768	CLM_0768		CLM_0768	827663	829504	+	PTS system%2C beta-glucoside-specific%2C IIABC component	identified by match to protein family HMM PF00358%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00830%3B match to protein family HMM TIGR01995	gene	gene739	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0768
CLM_0769	CLM_0769		CLM_0769	829516	830334	+	PHP domain protein	identified by match to protein family HMM PF02811	gene	gene740	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0769
CLM_0770	CLM_0770		CLM_0770	830510	830647	+	hypothetical protein	identified by glimmer%3B putative	gene	gene741	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0770
CLM_0771	CLM_0771		CLM_0771	830966	831676	+	transcriptional regulator%2C Crp/Fnr family	identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325	gene	gene742	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0771
CLM_0772	CLM_0772		CLM_0772	831955	833187	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00258%3B match to protein family HMM PF00753	gene	gene743	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0772
CLM_0773	CLM_0773		CLM_0773	833247	833945	+	putative scdA protein	identified by match to protein family HMM PF01814%3B match to protein family HMM PF04405	gene	gene744	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0773
CLM_0774	CLM_0774		CLM_0774	833971	834726	+	conserved hypothetical protein	identified by match to protein family HMM PF01814%3B match to protein family HMM PF04282	gene	gene745	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0774
CLM_0775	CLM_0775		CLM_0775	834799	835218	-	hypothetical protein	identified by glimmer%3B putative	gene	gene746	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0775
CLM_0776	CLM_0776	gltS	gltS	835880	837064	+	sodium/glutamate symporter	identified by match to protein family HMM PF03616%3B match to protein family HMM TIGR00210	gene	gene747	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0776
CLM_0777	CLM_0777		CLM_0777	837151	837267	-	transposase		gene	gene748	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0777
CLM_0778	CLM_0778		CLM_0778	837673	838140	+	conserved hypothetical protein		gene	gene749	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0778
CLM_0779	CLM_0779		CLM_0779	838147	839490	+	conserved hypothetical protein		gene	gene750	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0779
CLM_0780	CLM_0780		CLM_0780	839757	840743	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene751	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0780
CLM_0781	CLM_0781		CLM_0781	841085	841978	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene752	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0781
CLM_0782	CLM_0782		CLM_0782	841941	842696	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene753	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0782
CLM_0783	CLM_0783		CLM_0783	842727	843698	+	putative ABC transporter%2C substrate-binding protein	identified by match to protein family HMM PF04392	gene	gene754	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0783
CLM_0784	CLM_0784		CLM_0784	843712	844092	+	hypothetical protein	identified by glimmer%3B putative	gene	gene755	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0784
CLM_0785	CLM_0785		CLM_0785	844440	844577	+	hypothetical protein	identified by glimmer%3B putative	gene	gene756	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0785
CLM_0786	CLM_0786		CLM_0786	844812	845489	+	non-specific serine/threonine protein kinase		gene	gene757	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0786
CLM_0787	CLM_0787		CLM_0787	846074	847495	-	hypothetical protein	identified by glimmer%3B putative	gene	gene758	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0787
CLM_0788	CLM_0788		CLM_0788	847492	848055	-	RNA polymerase sigma-70 factor family	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene759	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0788
CLM_0789	CLM_0789		CLM_0789	848496	849434	+	dihydrouridine synthase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF01207	gene	gene760	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0789
CLM_0790	CLM_0790	greA	greA	849591	850055	+	transcription elongation factor GreA	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462	gene	gene761	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0790
CLM_0791	CLM_0791		CLM_0791	850223	850975	+	conserved hypothetical protein		gene	gene762	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0791
CLM_0792	CLM_0792		CLM_0792	851251	852735	+	type I restriction modification system M subunit	identified by match to protein family HMM PF02384	gene	gene763	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0792
CLM_0793	CLM_0793		CLM_0793	852716	853903	+	restriction modification system DNA specificity domain protein	identified by match to protein family HMM PF01420	gene	gene764	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0793
CLM_0794	CLM_0794		CLM_0794	854198	855013	+	conserved hypothetical protein		gene	gene765	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0794
CLM_0795	CLM_0795		CLM_0795	855118	858465	+	putative type I restriction-modification system%2C R subunit	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04313%3B match to protein family HMM PF04851	gene	gene766	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0795
CLM_0796	CLM_0796		CLM_0796	858557	858817	+	tfoX domain protein	identified by match to protein family HMM PF04994	gene	gene767	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0796
CLM_0797	CLM_0797		CLM_0797	858915	859370	+	DNA gyrase inhibitory protein%2C GyrI	identified by match to protein family HMM PF06445	gene	gene768	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0797
CLM_0798	CLM_0798		CLM_0798	859967	860893	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene769	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0798
CLM_0799	CLM_0799	blaI	blaI	861099	861473	+	penicillinase repressor	identified by match to protein family HMM PF03965	gene	gene770	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0799
CLM_0800	CLM_0800		CLM_0800	861484	863265	+	putative beta-lactamase-inducing penicillin-binding protein	identified by match to protein family HMM PF00905%3B match to protein family HMM PF05569	gene	gene771	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0800
CLM_0801	CLM_0801		CLM_0801	863509	863640	-	conserved domain protein		gene	gene772	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0801
CLM_0802	CLM_0802		CLM_0802	864041	864862	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene773	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0802
CLM_0803	CLM_0803		CLM_0803	865398	866387	+	ABC transporter%2C iron chelate uptake transporter FeCT family%2C periplasmic-binding protein	identified by match to protein family HMM PF01497	gene	gene774	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0803
CLM_0804	CLM_0804	fhuB	fhuB	866483	867523	+	ferrichrome transport system permease protein FhuB	identified by similarity to SP:P49936%3B match to protein family HMM PF01032	gene	gene775	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0804
CLM_0805	CLM_0805	fhuG	fhuG	867523	868563	+	ferrichrome transport system permease protein FhuG	identified by similarity to SP:P49937%3B match to protein family HMM PF01032	gene	gene776	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0805
CLM_0806	CLM_0806	fhuC	fhuC	868791	869576	+	ferrichrome transport ATP-binding protein FhuC	identified by similarity to SP:P49938%3B match to protein family HMM PF00005	gene	gene777	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0806
CLM_0807	CLM_0807	nifH	nifH	869606	870355	+	nitrogenase iron protein	identified by match to protein family HMM PF00142	gene	gene778	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0807
CLM_0808	CLM_0808		CLM_0808	870358	871635	+	hypothetical protein	identified by glimmer%3B putative	gene	gene779	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0808
CLM_0809	CLM_0809		CLM_0809	871667	872905	+	hypothetical protein	identified by glimmer%3B putative	gene	gene780	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0809
CLM_0810	CLM_0810		CLM_0810	873350	875362	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene781	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0810
CLM_0811	CLM_0811		CLM_0811	875414	875587	+	hypothetical protein	identified by glimmer%3B putative	gene	gene782	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0811
CLM_0813	CLM_0813		CLM_0813	875658	877067	-	conserved hypothetical protein		gene	gene783	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0813
CLM_0814	CLM_0814		CLM_0814	877207	877323	-	hypothetical protein	identified by glimmer%3B putative	gene	gene784	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0814
CLM_0815	CLM_0815	gcvT	gcvT	877491	878603	+	glycine cleavage system T protein	identified by match to protein family HMM PF01571%3B match to protein family HMM PF08669%3B match to protein family HMM TIGR00528	gene	gene785	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0815
CLM_0816	CLM_0816	gcvH	gcvH	878728	879120	+	glycine cleavage system H protein	identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527	gene	gene786	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0816
CLM_0817	CLM_0817	gcvPA	gcvPA	879123	880463	+	glycine cleavage system P protein%2C subunit 1	identified by match to protein family HMM PF02347	gene	gene787	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0817
CLM_0818	CLM_0818	gcvPB	gcvPB	880463	881917	+	glycine cleavage system P protein%2C subunit 2	identified by match to protein family HMM PF02347	gene	gene788	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0818
CLM_0819	CLM_0819	lpdA	lpdA	882106	883494	+	dihydrolipoyl dehydrogenase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350	gene	gene789	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0819
CLM_0820	CLM_0820		CLM_0820	883643	884620	+	putative lipoate-protein ligase A	identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00545	gene	gene790	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0820
CLM_0821	CLM_0821		CLM_0821	885002	885259	+	conserved hypothetical protein		gene	gene791	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0821
CLM_0822	CLM_0822		CLM_0822	885652	886218	+	acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene792	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0822
CLM_0823	CLM_0823		CLM_0823	886391	886573	+	hypothetical protein	identified by glimmer%3B putative	gene	gene793	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0823
CLM_0824	CLM_0824		CLM_0824	886605	887132	+	transposase%2C mutator type		gene	gene794	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0824
CLM_0825	CLM_0825		CLM_0825	887149	887847	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene795	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0825
CLM_0826	CLM_0826		CLM_0826	887832	888881	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene796	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0826
CLM_0827	CLM_0827		CLM_0827	888954	889637	+	macrolide export ATP-binding/permease protein MacB	identified by match to protein family HMM PF00005	gene	gene797	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0827
CLM_0828	CLM_0828		CLM_0828	889634	891436	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene798	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0828
CLM_0829	CLM_0829		CLM_0829	891624	892112	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene799	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0829
CLM_0830	CLM_0830		CLM_0830	892344	892931	+	flavin reductase	identified by match to protein family HMM PF03358	gene	gene800	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0830
CLM_0831	CLM_0831		CLM_0831	893293	893427	+	conserved hypothetical protein		gene	gene801	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0831
CLM_0832	CLM_0832		CLM_0832	893489	894021	+		conserved hypothetical protein%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene802	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0832
CLM_0834	CLM_0834		CLM_0834	894260	895024	+	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene803	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0834
CLM_0835	CLM_0835		CLM_0835	895076	895807	+	ABC Transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene804	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0835
CLM_0836	CLM_0836		CLM_0836	895794	896537	+	putative drug resistance ABC-2 type transporter%2C permease protein	identified by match to protein family HMM PF01061	gene	gene805	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0836
CLM_0837	CLM_0837		CLM_0837	896998	897879	-	integral membrane protein	identified by match to protein family HMM PF00892	gene	gene806	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0837
CLM_0838	CLM_0838		CLM_0838	898017	898565	+	cupin domain protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene807	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0838
CLM_0839	CLM_0839		CLM_0839	899568	900959	+	conserved hypothetical protein		gene	gene808	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0839
CLM_0840	CLM_0840		CLM_0840	901326	901676	+	acetyltransferase%2C gnat family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00583	gene	gene809	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0840
CLM_0841	CLM_0841		CLM_0841	902060	902176	+	conserved hypothetical protein		gene	gene810	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0841
CLM_0842	CLM_0842		CLM_0842	902232	903197	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene811	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0842
CLM_0843	CLM_0843		CLM_0843	903432	903596	+	conserved hypothetical protein		gene	gene812	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0843
CLM_0844	CLM_0844		CLM_0844	903598	903858	+	conserved hypothetical protein		gene	gene813	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0844
CLM_0845	CLM_0845		CLM_0845	903978	904112	-	Na+ driven multidrug efflux pump	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene814	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0845
CLM_0846	CLM_0846		CLM_0846	904264	904473	+	conserved domain protein		gene	gene815	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0846
CLM_0847	CLM_0847		CLM_0847	904470	904892	+	hypothetical protein	identified by glimmer%3B putative	gene	gene816	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0847
CLM_0848	CLM_0848		CLM_0848	905113	905520	+	lactoylglutathione lyase	identified by match to protein family HMM PF00903	gene	gene817	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0848
CLM_0849	CLM_0849		CLM_0849	905617	906381	+	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene818	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0849
CLM_0850	CLM_0850		CLM_0850	906487	906633	+	transcriptional regulator%2C MerR family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene819	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0850
CLM_0851	CLM_0851		CLM_0851	906686	908923	+	putative drug resistance ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene820	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0851
CLM_0852	CLM_0852		CLM_0852	909118	911376	+	conserved hypothetical protein	identified by similarity to GB:BAE82969.1	gene	gene821	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0852
CLM_0853	CLM_0853		CLM_0853	911490	912197	-	conserved hypothetical protein	identified by match to protein family HMM PF07505	gene	gene822	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0853
CLM_0854	CLM_0854		CLM_0854	912296	913168	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene823	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0854
CLM_0855	CLM_0855		CLM_0855	913845	915821	+	conserved hypothetical protein		gene	gene824	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0855
CLM_0856	CLM_0856		CLM_0856	916309	917307	-	3-oxoacyl-[acyl-carrier-protein] synthase III%2C homolog	identified by match to protein family HMM PF08541%3B match to protein family HMM PF08545	gene	gene825	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0856
CLM_0857	CLM_0857		CLM_0857	917556	919022	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene826	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0857
CLM_0858	CLM_0858		CLM_0858	919516	919806	+	conserved hypothetical protein		gene	gene827	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0858
CLM_0859	CLM_0859		CLM_0859	919860	919973	-	conserved hypothetical protein		gene	gene828	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0859
CLM_0860	CLM_0860		CLM_0860	920005	921558	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene829	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0860
CLM_0861	CLM_0861		CLM_0861	921716	922342	+	DJ-1/PfpI family protein	identified by match to protein family HMM PF01965	gene	gene830	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0861
CLM_0862	CLM_0862		CLM_0862	922406	922537	+	conserved domain protein	identified by similarity to GB:ABD14706.1	gene	gene831	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0862
CLM_0863	CLM_0863		CLM_0863	923215	924507	+	hypothetical protein	identified by glimmer%3B putative	gene	gene832	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0863
CLM_0864	CLM_0864		CLM_0864	924507	924983	+	hypothetical protein	identified by glimmer%3B putative	gene	gene833	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0864
CLM_0865	CLM_0865		CLM_0865	925145	926890	+	hypothetical protein	identified by glimmer%3B putative	gene	gene834	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0865
CLM_0866	CLM_0866		CLM_0866	927608	928516	-	cysteine synthase family protein	identified by match to protein family HMM PF00291	gene	gene835	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0866
CLM_0867	CLM_0867	luxS	luxS	928500	928952	-	S-ribosylhomocysteinase LuxS	identified by match to protein family HMM PF02664	gene	gene836	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0867
CLM_0868	CLM_0868	metC	metC	928954	930096	-	cystathionine beta-lyase	identified by match to protein family HMM PF01053%3B match to protein family HMM PF01212	gene	gene837	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0868
CLM_0869	CLM_0869		CLM_0869	930197	930823	-	conserved hypothetical protein	identified by match to protein family HMM PF01209%3B match to protein family HMM PF02390%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene838	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0869
CLM_0870	CLM_0870		CLM_0870	931379	931492	-	hypothetical protein	identified by glimmer%3B putative	gene	gene839	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0870
CLM_0871	CLM_0871		CLM_0871	931730	933583	+	glycosyl hydrolase%2C family 18	identified by match to protein family HMM PF00704	gene	gene840	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0871
CLM_0872	CLM_0872		CLM_0872	933835	934608	+	YbaJ	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene841	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0872
CLM_0873	CLM_0873		CLM_0873	934830	935042	+	radical SAM domain protein		gene	gene842	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0873
CLM_0874	CLM_0874		CLM_0874	935340	936212	+	transcription activator%2C effector binding	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene843	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0874
CLM_0875	CLM_0875		CLM_0875	936515	936754	+	conserved domain protein	identified by match to protein family HMM PF00403	gene	gene844	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0875
CLM_0876	CLM_0876		CLM_0876	936862	937194	-	conserved hypothetical protein		gene	gene845	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0876
CLM_0877	CLM_0877		CLM_0877	937282	937782	-	conserved hypothetical protein	identified by match to protein family HMM PF06172	gene	gene846	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0877
CLM_0878	CLM_0878		CLM_0878	938333	938941	-	hypothetical protein	identified by glimmer%3B putative	gene	gene847	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0878
CLM_0879	CLM_0879		CLM_0879	939034	939456	-	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene848	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0879
CLM_0880	CLM_0880		CLM_0880	939600	939863	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene849	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0880
CLM_0881	CLM_0881		CLM_0881	939901	941040	+	phage protein	identified by match to protein family HMM PF04271%3B match to protein family HMM TIGR01446	gene	gene850	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0881
CLM_0882	CLM_0882		CLM_0882	941059	941598	+	RNA polymerase sigma-70 factor family	identified by match to protein family HMM TIGR02937	gene	gene851	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0882
CLM_0883	CLM_0883		CLM_0883	941698	942054	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02436	gene	gene852	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0883
CLM_0884	CLM_0884		CLM_0884	942153	942332	+	conserved hypothetical protein		gene	gene853	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0884
CLM_0885	CLM_0885		CLM_0885	942446	942613	+	hypothetical protein	identified by glimmer%3B putative	gene	gene854	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0885
CLM_0886	CLM_0886		CLM_0886	942786	943424	+	hypothetical protein	identified by glimmer%3B putative	gene	gene855	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0886
CLM_0887	CLM_0887		CLM_0887	943843	944064	+	conserved hypothetical protein		gene	gene856	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0887
CLM_0888	CLM_0888		CLM_0888	944084	944311	+	conserved hypothetical protein		gene	gene857	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0888
CLM_0889	CLM_0889		CLM_0889	944570	944935	+	arsenate reductase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by similarity to SP:Q01257	gene	gene858	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0889
CLM_0890	CLM_0890		CLM_0890	944989	945117	+	hypothetical protein	identified by glimmer%3B putative	gene	gene859	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0890
CLM_0891	CLM_0891		CLM_0891	945162	946634	-	toxin complex component ORF-X3		gene	gene860	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0891
CLM_0892	CLM_0892		CLM_0892	946673	948925	-	toxin complex component ORF-X2		gene	gene861	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0892
CLM_0893	CLM_0893		CLM_0893	948939	949367	-	toxin complex component ORF-X1		gene	gene862	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0893
CLM_0894	CLM_0894	botR	botR	950593	951129	-	transcriptional regulator BotR%2C P-21	identified by match to protein family HMM PF08281%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR03209	gene	gene863	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0894
CLM_0895	CLM_0895	p47	p47	951429	952679	+	P-47 protein	identified by similarity to GB:ABC26000.1%3B match to protein family HMM PF06597	gene	gene864	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0895
CLM_0896	CLM_0896	ntnH	ntnH	952695	956174	+	botulinum neurotoxin type A2%2C nontoxic-nonhemagglutinin component%2C NTNH	identified by match to protein family HMM PF01742%3B match to protein family HMM PF07953%3B match to protein family HMM PF08470	gene	gene865	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0896
CLM_0897	CLM_0897	botA	botA	956218	960108	+	bontoxilysin A	identified by similarity to SP:P10845%3B match to protein family HMM PF01742%3B match to protein family HMM PF07951%3B match to protein family HMM PF07952%3B match to protein family HMM PF07953	gene	gene866	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0897
CLM_0898	CLM_0898		CLM_0898	960771	960890	+	hypothetical protein	identified by glimmer%3B putative	gene	gene867	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0898
CLM_0899	CLM_0899		CLM_0899	961128	962078	+	LycA	identified by match to protein family HMM PF01183%3B match to protein family HMM PF01471	gene	gene868	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0899
CLM_0900	CLM_0900		CLM_0900	962631	962753	+	hypothetical protein	identified by glimmer%3B putative	gene	gene869	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0900
CLM_0901	CLM_0901		CLM_0901	962766	962993	+	hypothetical protein	identified by glimmer%3B putative	gene	gene870	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0901
CLM_0902	CLM_0902		CLM_0902	963069	963200	+	hypothetical protein	identified by glimmer%3B putative	gene	gene871	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0902
CLM_0903	CLM_0903		CLM_0903	963695	964111	+	arsenate reductase family protein	identified by similarity to SP:Q01257%3B match to protein family HMM PF01451	gene	gene872	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0903
CLM_0904	CLM_0904		CLM_0904	964341	964787	-	C_GCAxxG_C_C family protein	identified by match to protein family HMM PF09719%3B match to protein family HMM TIGR01909	gene	gene873	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0904
CLM_0905	CLM_0905		CLM_0905	965230	965553	+	putative arsenical resistance operon repressor ArsR	identified by similarity to SP:Q01256%3B match to protein family HMM PF01022	gene	gene874	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0905
CLM_0906	CLM_0906	arsD	arsD	965574	965945	+	arsenical resistence operon repressor ArsD	identified by match to protein family HMM PF06953	gene	gene875	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0906
CLM_0907	CLM_0907		CLM_0907	965964	967709	+	putative arsenite-transporting ATPase ArsA	identified by similarity to SP:P08690%3B match to protein family HMM PF02374%3B match to protein family HMM TIGR00345	gene	gene876	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0907
CLM_0908	CLM_0908		CLM_0908	967804	968217	+	arsenate reductase ArsC	identified by match to protein family HMM PF01451	gene	gene877	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0908
CLM_0909	CLM_0909	arsB	arsB	968261	969331	+	arsenical-resistance protein	identified by match to protein family HMM PF01758%3B match to protein family HMM TIGR00832	gene	gene878	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0909
CLM_0910	CLM_0910		CLM_0910	969385	969588	+	conserved hypothetical protein		gene	gene879	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0910
CLM_0911	CLM_0911		CLM_0911	970596	970793	-	hypothetical protein	identified by glimmer%3B putative	gene	gene881	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0911
CLM_0912	CLM_0912		CLM_0912	969955	970608	+	methyltransferase family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene880	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0912
CLM_0913	CLM_0913		CLM_0913	971212	971760	+	phosphoglycerate mutase family protein	identified by match to protein family HMM PF00300	gene	gene882	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0913
CLM_0914	CLM_0914		CLM_0914	972166	972699	+	conserved hypothetical protein		gene	gene883	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0914
CLM_0915	CLM_0915		CLM_0915	973331	974266	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene884	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0915
CLM_0916	CLM_0916		CLM_0916	974259	975395	+	putative membrane protein		gene	gene885	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0916
CLM_0917	CLM_0917		CLM_0917	975849	976310	+	conserved hypothetical protein		gene	gene886	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0917
CLM_0918	CLM_0918	thyA	thyA	976300	977274	+	thymidylate synthase	identified by match to protein family HMM PF00303	gene	gene887	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0918
CLM_0919	CLM_0919		CLM_0919	977286	978044	+	methyltransferase%2C UbiE/COQ5 family	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene888	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0919
CLM_0920	CLM_0920		CLM_0920	978090	979304	+	putative thiamine pyridinylase I	identified by similarity to SP:P45741%3B match to protein family HMM PF01547	gene	gene889	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0920
CLM_0921	CLM_0921	thiD	thiD	979382	980209	+	phosphomethylpyrimidine kinase	identified by match to protein family HMM PF08543%3B match to protein family HMM TIGR00097	gene	gene890	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0921
CLM_0922	CLM_0922		CLM_0922	980381	980614	+	hypothetical protein	identified by glimmer%3B putative	gene	gene891	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0922
CLM_0923	CLM_0923		CLM_0923	980827	981291	-	putative transporter	identified by match to protein family HMM PF06695	gene	gene892	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0923
CLM_0924	CLM_0924		CLM_0924	981687	982475	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene893	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0924
CLM_0925	CLM_0925		CLM_0925	982478	984145	+	ABC transporter%2C permease protein		gene	gene894	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0925
CLM_0926	CLM_0926		CLM_0926	984315	985007	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene895	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0926
CLM_0927	CLM_0927		CLM_0927	985172	986092	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene896	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0927
CLM_0928	CLM_0928		CLM_0928	986092	986883	+	putative membrane protein		gene	gene897	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0928
CLM_0929	CLM_0929		CLM_0929	987134	987991	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene898	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0929
CLM_0930	CLM_0930		CLM_0930	988371	989276	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene899	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0930
CLM_0931	CLM_0931		CLM_0931	990077	991105	+	conserved hypothetical protein		gene	gene900	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0931
CLM_0932	CLM_0932		CLM_0932	991374	992399	+	conserved hypothetical protein		gene	gene901	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0932
CLM_0933	CLM_0933		CLM_0933	992583	993275	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene902	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0933
CLM_0934	CLM_0934		CLM_0934	993262	995958	+	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene903	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0934
CLM_0935	CLM_0935		CLM_0935	996171	996290	+	hypothetical protein	identified by glimmer%3B putative	gene	gene904	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0935
CLM_0936	CLM_0936		CLM_0936	996521	997234	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene905	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0936
CLM_0937	CLM_0937		CLM_0937	997406	998668	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene906	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0937
CLM_0938	CLM_0938		CLM_0938	998858	999499	+	conserved hypothetical protein	identified by match to protein family HMM PF06555	gene	gene907	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0938
CLM_0939	CLM_0939		CLM_0939	999783	999971	-	small acid-soluble spore protein%2C H-type	identified by match to protein family HMM TIGR02861	gene	gene908	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0939
CLM_0940	CLM_0940		CLM_0940	1000301	1001080	+	putative membrane protein		gene	gene909	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0940
CLM_0941	CLM_0941		CLM_0941	1001545	1001673	+	hypothetical protein	identified by glimmer%3B putative	gene	gene910	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0941
CLM_0942	CLM_0942	dapB	dapB	1001768	1002565	+	dihydrodipicolinate reductase	identified by match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036	gene	gene911	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0942
CLM_0943	CLM_0943		CLM_0943	1002587	1003426	+	rhodanese domain protein	identified by match to protein family HMM PF00581	gene	gene912	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0943
CLM_0944	CLM_0944		CLM_0944	1003919	1005472	+		conserved hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error	pseudogene	gene913	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0944
CLM_0946	CLM_0946		CLM_0946	1005737	1006066	+	hypothetical protein	identified by glimmer%3B putative	gene	gene914	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0946
CLM_0947	CLM_0947		CLM_0947	1006146	1007594	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene915	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0947
CLM_0948	CLM_0948		CLM_0948	1007787	1008392	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene916	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0948
CLM_0949	CLM_0949		CLM_0949	1008584	1009000	-	phage integrase	identified by match to protein family HMM PF00589	gene	gene917	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0949
CLM_0950	CLM_0950		CLM_0950	1009069	1009491	+	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene918	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0950
CLM_0951	CLM_0951		CLM_0951	1009607	1009972	+	conserved hypothetical protein		gene	gene919	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0951
CLM_0952	CLM_0952		CLM_0952	1010394	1011800	+	hypothetical protein	identified by glimmer%3B putative	gene	gene920	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0952
CLM_0953	CLM_0953		CLM_0953	1012136	1013305	+	putative amidohydrolase	identified by match to protein family HMM PF01979	gene	gene921	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0953
CLM_0954	CLM_0954	brnQ	brnQ	1013871	1015172	+	branched-chain amino acid transport system II carrier protein	identified by match to protein family HMM PF05525%3B match to protein family HMM TIGR00796	gene	gene922	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0954
CLM_0955	CLM_0955	brnQ	brnQ	1015323	1016639	+	branched-chain amino acid transport system II carrier protein	identified by match to protein family HMM PF05525%3B match to protein family HMM TIGR00796	gene	gene923	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0955
CLM_0956	CLM_0956		CLM_0956	1016718	1019198	-	methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein%2C family 5	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00496	gene	gene924	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0956
CLM_0957	CLM_0957		CLM_0957	1019421	1019657	+	feoA family protein	identified by match to protein family HMM PF04023	gene	gene925	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0957
CLM_0958	CLM_0958	feoB	feoB	1019802	1020584	+	ferrous iron transport protein B	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231	gene	gene926	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0958
CLM_0959	CLM_0959		CLM_0959	1020581	1022104	+	ferrous iron transport protein B	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670	gene	gene927	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0959
CLM_0961	CLM_0961	cobC	cobC	1022819	1023433	+	alpha-ribazole phosphatase	identified by match to protein family HMM PF00300%3B match to protein family HMM TIGR03162	gene	gene928	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0961
CLM_0962	CLM_0962		CLM_0962	1023578	1025140	+	vanW family protein	identified by match to protein family HMM PF04294%3B match to protein family HMM PF07501	gene	gene929	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0962
CLM_0963	CLM_0963	cobS	cobS	1025541	1026287	+	cobalamin 5'-phosphate synthase	identified by match to protein family HMM PF02654%3B match to protein family HMM TIGR00317	gene	gene930	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0963
CLM_0964	CLM_0964		CLM_0964	1026746	1027531	+	conserved hypothetical protein		gene	gene931	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0964
CLM_0965	CLM_0965		CLM_0965	1027840	1028121	+	putative membrane protein		gene	gene932	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0965
CLM_0966	CLM_0966		CLM_0966	1028252	1028434	+	conserved hypothetical protein		gene	gene933	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0966
CLM_0967	CLM_0967		CLM_0967	1028452	1028700	+	conserved hypothetical protein	identified by match to protein family HMM PF07875	gene	gene934	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0967
CLM_0968	CLM_0968		CLM_0968	1029269	1030621	+	conserved hypothetical protein		gene	gene935	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0968
CLM_0969	CLM_0969	queD	queD	1030890	1031243	+	queuosine biosynthesis protein QueD	identified by match to protein family HMM PF01242%3B match to protein family HMM TIGR03367	gene	gene936	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0969
CLM_0970	CLM_0970	folP	folP	1031347	1032534	+	dihydropteroate synthase	identified by match to protein family HMM PF00809%3B match to protein family HMM TIGR01496	gene	gene937	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0970
CLM_0972	CLM_0972		CLM_0972	1032687	1032938	+	conserved domain protein		gene	gene938	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0972
CLM_0973	CLM_0973	folK	folK	1033039	1033494	+	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	identified by match to protein family HMM PF01288%3B match to protein family HMM TIGR01498	gene	gene939	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0973
CLM_0974	CLM_0974		CLM_0974	1033608	1034048	+	heat shock protein	identified by match to protein family HMM PF00011	gene	gene940	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0974
CLM_0975	CLM_0975		CLM_0975	1034368	1035657	+	transcriptional regulator%2C MerR family/methyltransferase%2C UbiE/COQ5 family	identified by match to protein family HMM PF00376%3B match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene941	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0975
CLM_0976	CLM_0976		CLM_0976	1035712	1036887	+	exopolysaccharide biosynthesis protein	identified by match to protein family HMM PF01041	gene	gene942	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0976
CLM_0977	CLM_0977		CLM_0977	1037216	1038337	+	putative pleiotropic regulatory protein	identified by match to protein family HMM PF01041	gene	gene943	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0977
CLM_0978	CLM_0978		CLM_0978	1039152	1039346	+	conserved hypothetical protein		gene	gene944	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0978
CLM_0979	CLM_0979		CLM_0979	1039787	1040299	+	RNA polymerase sigma-70 factor%2C ECF family	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02954	gene	gene945	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0979
CLM_0980	CLM_0980		CLM_0980	1040304	1041467	+	hypothetical protein	identified by glimmer%3B putative	gene	gene946	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0980
CLM_0981	CLM_0981		CLM_0981	1041759	1042313	-	putative flavoredoxin		gene	gene947	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0981
CLM_0982	CLM_0982	nimA	nimA	1042798	1043292	+	nitroimidazole resistance protein NimA	identified by similarity to GB:CAA50581.1%3B match to protein family HMM PF01243	gene	gene948	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0982
CLM_0983	CLM_0983		CLM_0983	1043747	1044541	-	putative ABC transporter%2C permease protein		gene	gene949	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0983
CLM_0984	CLM_0984		CLM_0984	1044560	1045477	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene950	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0984
CLM_0986	CLM_0986		CLM_0986	1045449	1046603	-	HTH domain protein	identified by match to protein family HMM PF01381	gene	gene951	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0986
CLM_0987	CLM_0987		CLM_0987	1047245	1047373	+	conserved hypothetical protein		gene	gene952	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0987
CLM_0988	CLM_0988		CLM_0988	1048058	1048870	+	non-heme haloperoxidase family protein	identified by match to protein family HMM PF00561	gene	gene953	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0988
CLM_0990	CLM_0990		CLM_0990	1049366	1049941	+		acetyltransferase%2C gnat family%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00583	pseudogene	gene954	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0990
CLM_0991	CLM_0991		CLM_0991	1049990	1050643	+	pentapeptide repeat family protein	identified by match to protein family HMM PF00805	gene	gene955	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0991
CLM_0992	CLM_0992		CLM_0992	1050913	1051482	-	flavodoxin-like fold domain protein	identified by match to protein family HMM PF02525	gene	gene956	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0992
CLM_0993	CLM_0993		CLM_0993	1051500	1052054	-	flavin reductase	identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358	gene	gene957	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0993
CLM_0994	CLM_0994		CLM_0994	1052159	1052485	-	transcriptional regulator%2C ArsR family		gene	gene958	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0994
CLM_0995	CLM_0995		CLM_0995	1052829	1053656	-	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene959	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0995
CLM_0996	CLM_0996		CLM_0996	1053768	1054385	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene960	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0996
CLM_0997	CLM_0997		CLM_0997	1054591	1055106	+	conserved hypothetical protein	identified by match to protein family HMM PF04229	gene	gene961	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0997
CLM_0998	CLM_0998		CLM_0998	1055169	1055693	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene962	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0998
CLM_0999	CLM_0999		CLM_0999	1056399	1057100	-	conserved hypothetical protein	identified by match to protein family HMM PF02678	gene	gene963	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_0999
CLM_1000	CLM_1000		CLM_1000	1057377	1057685	-	putative transcriptional regulator	identified by match to protein family HMM PF01638	gene	gene964	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1000
CLM_1001	CLM_1001		CLM_1001	1057813	1058442	+	nitroreductase family protein	identified by match to protein family HMM PF00881	gene	gene965	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1001
CLM_1002	CLM_1002	lipA	lipA	1058806	1060248	+	triacylglycerol lipase	identified by similarity to GB:AAF40217.1	gene	gene966	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1002
CLM_1003	CLM_1003	oxdD	oxdD	1060406	1061614	-	oxalate decarboxylase	identified by match to protein family HMM PF00190%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR03404	gene	gene967	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1003
CLM_1004	CLM_1004		CLM_1004	1061872	1062450	-	decarboxylase family protein	identified by match to protein family HMM PF03641%3B match to protein family HMM TIGR00730	gene	gene968	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1004
CLM_1005	CLM_1005		CLM_1005	1062508	1062963	-	putative membrane protein	identified by match to protein family HMM PF04657	gene	gene969	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1005
CLM_1006	CLM_1006		CLM_1006	1063077	1063964	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene970	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1006
CLM_1007	CLM_1007		CLM_1007	1064236	1064682	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene971	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1007
CLM_1008	CLM_1008		CLM_1008	1064977	1065447	-	putative membrane protein		gene	gene972	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1008
CLM_1009	CLM_1009		CLM_1009	1065447	1066208	-	conserved hypothetical protein	identified by match to protein family HMM PF06738	gene	gene973	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1009
CLM_1010	CLM_1010		CLM_1010	1066869	1067369	-	putative peptide deformylase	identified by match to protein family HMM PF01327	gene	gene974	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1010
CLM_1011	CLM_1011		CLM_1011	1067603	1069039	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene975	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1011
CLM_1012	CLM_1012		CLM_1012	1069117	1069635	-	nitroreductase family protein	identified by match to protein family HMM PF00881	gene	gene976	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1012
CLM_1013	CLM_1013		CLM_1013	1069820	1069936	+	transcriptional regulator%2C MarR family		gene	gene977	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1013
CLM_1014	CLM_1014		CLM_1014	1069937	1070743	-	iron-sulfur cluster-binding protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene978	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1014
CLM_1015	CLM_1015		CLM_1015	1071090	1071251	+	hypothetical protein	identified by glimmer%3B putative	gene	gene979	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1015
CLM_1016	CLM_1016		CLM_1016	1071482	1072186	+	alpha/beta hydrolase		gene	gene980	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1016
CLM_1017	CLM_1017		CLM_1017	1072149	1073387	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene981	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1017
CLM_1019	CLM_1019		CLM_1019	1074025	1074857	+		transcription antiterminator%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF03123	pseudogene	gene982	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1019
CLM_1020	CLM_1020		CLM_1020	1074982	1076871	+	PTS system%2C beta-glucoside-specific%2C IIABC component	identified by match to protein family HMM PF00358%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00830%3B match to protein family HMM TIGR01995	gene	gene983	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1020
CLM_1021	CLM_1021		CLM_1021	1077200	1078621	+	glycosyl hydrolase%2C family 1	identified by match to protein family HMM PF00232	gene	gene984	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1021
CLM_1022	CLM_1022		CLM_1022	1078749	1078955	+	hypothetical protein	identified by glimmer%3B putative	gene	gene985	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1022
CLM_1023	CLM_1023	mraY	mraY	1079157	1080110	-	phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by match to protein family HMM PF00953	gene	gene986	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1023
CLM_1024	CLM_1024		CLM_1024	1080206	1080337	-	hypothetical protein	identified by glimmer%3B putative	gene	gene987	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1024
CLM_1025	CLM_1025		CLM_1025	1080538	1081398	+	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene988	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1025
CLM_1026	CLM_1026		CLM_1026	1081823	1082473	+	chloramphenicol acetyltransferase	identified by match to protein family HMM PF00132	gene	gene989	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1026
CLM_1028	CLM_1028		CLM_1028	1082717	1083825	+		acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family%2C frameshift%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene990	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1028
CLM_1029	CLM_1029		CLM_1029	1083899	1084645	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene991	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1029
CLM_1030	CLM_1030		CLM_1030	1084781	1086013	-	peptidyl-arginine deiminase%2C Porphyromonas-type	identified by match to protein family HMM PF04371	gene	gene992	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1030
CLM_1032	CLM_1032		CLM_1032	1086310	1086921	+		transcriptional regulator%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P39842	pseudogene	gene993	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1032
CLM_1033	CLM_1033		CLM_1033	1087090	1087242	+	multimeric flavodoxin WrbA family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene994	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1033
CLM_1034	CLM_1034		CLM_1034	1087275	1087427	+	hypothetical protein	identified by glimmer%3B putative	gene	gene995	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1034
CLM_1035	CLM_1035		CLM_1035	1087717	1087839	+	hypothetical protein	identified by glimmer%3B putative	gene	gene996	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1035
CLM_1036	CLM_1036		CLM_1036	1088169	1088555	-	conserved hypothetical protein		gene	gene997	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1036
CLM_1037	CLM_1037		CLM_1037	1089303	1089779	+	conserved hypothetical protein	identified by match to protein family HMM PF09557%3B match to protein family HMM TIGR02271	gene	gene998	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1037
CLM_1038	CLM_1038		CLM_1038	1089858	1090526	+	conserved domain protein	identified by match to protein family HMM PF09557%3B match to protein family HMM TIGR02271	gene	gene999	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1038
CLM_1039	CLM_1039		CLM_1039	1090939	1091529	+	conserved hypothetical protein	identified by match to protein family HMM PF04229	gene	gene1000	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1039
CLM_1040	CLM_1040		CLM_1040	1091610	1091987	-	ErfK/YbiS/YcfS/YnhG family protein	identified by match to protein family HMM PF03734	gene	gene1001	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1040
CLM_1041	CLM_1041		CLM_1041	1092163	1092513	-	conserved hypothetical protein		gene	gene1002	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1041
CLM_1042	CLM_1042		CLM_1042	1092608	1092730	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1003	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1042
CLM_1043	CLM_1043		CLM_1043	1092777	1093085	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by glimmer%3B putative	gene	gene1004	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1043
CLM_1044	CLM_1044		CLM_1044	1093303	1093680	-	acetyltransferase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1005	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1044
CLM_1045	CLM_1045		CLM_1045	1093696	1093830	-	GCN5-related N-acetyltransferase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1006	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1045
CLM_1046	CLM_1046		CLM_1046	1094207	1094977	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1007	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1046
CLM_1047	CLM_1047		CLM_1047	1095517	1097124	+	conserved hypothetical protein		gene	gene1008	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1047
CLM_1048	CLM_1048		CLM_1048	1097487	1099847	-	ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF02687	gene	gene1009	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1048
CLM_1049	CLM_1049		CLM_1049	1100006	1100677	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1010	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1049
CLM_1050	CLM_1050		CLM_1050	1100677	1101705	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1011	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1050
CLM_1051	CLM_1051	ilvE	ilvE	1102115	1103140	+	branched-chain-amino-acid transaminase	identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01123	gene	gene1012	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1051
CLM_1052	CLM_1052		CLM_1052	1103380	1103925	+	BioY family protein	identified by match to protein family HMM PF02632	gene	gene1013	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1052
CLM_1053	CLM_1053		CLM_1053	1104154	1104801	+	cyclase family protein	identified by match to protein family HMM PF04199	gene	gene1014	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1053
CLM_1054	CLM_1054		CLM_1054	1105188	1105733	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1015	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1054
CLM_1055	CLM_1055		CLM_1055	1105805	1107400	+	putative LexA repressor	identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR00498	gene	gene1016	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1055
CLM_1056	CLM_1056		CLM_1056	1107692	1108249	+	bifunctional adenosylcobalamin biosynthesis protein CobU	identified by match to protein family HMM PF02283	gene	gene1017	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1056
CLM_1057	CLM_1057		CLM_1057	1108576	1109457	+	tetratricopeptide repeat protein		gene	gene1018	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1057
CLM_1058	CLM_1058	tipA	tipA	1109563	1110330	-	transcriptional activator TipA	identified by similarity to SP:P0A4T9%3B match to protein family HMM PF00376%3B match to protein family HMM PF07739	gene	gene1019	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1058
CLM_1060	CLM_1060		CLM_1060	1110843	1110974	+	conserved hypothetical protein		gene	gene1020	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1060
CLM_1061	CLM_1061	cobQ	cobQ	1111035	1112516	+	cobyric acid synthase CobQ	identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00313	gene	gene1021	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1061
CLM_1062	CLM_1062	cobD	cobD	1112518	1113489	+	cobalamin biosynthesis protein CobD	identified by match to protein family HMM PF03186%3B match to protein family HMM TIGR00380	gene	gene1022	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1062
CLM_1063	CLM_1063		CLM_1063	1113874	1114962	+	aminotransferase family protein	identified by match to protein family HMM PF00155	gene	gene1023	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1063
CLM_1064	CLM_1064	cbiM	cbiM	1115147	1115866	+	cobalamin biosynthesis protein CbiM	identified by match to protein family HMM PF01891%3B match to protein family HMM TIGR00123	gene	gene1024	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1064
CLM_1065	CLM_1065	cbiN	cbiN	1115870	1116169	+	cobalt transport protein	identified by match to protein family HMM PF02553%3B match to protein family HMM TIGR01165	gene	gene1025	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1065
CLM_1066	CLM_1066	cbiQ	cbiQ	1116147	1116830	+	cobalt ABC transporter%2C permease protein CbiQ	identified by match to protein family HMM PF02361%3B match to protein family HMM TIGR02454	gene	gene1026	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1066
CLM_1067	CLM_1067		CLM_1067	1117179	1117826	+	precorrin-2 dehydrogenase		gene	gene1027	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1067
CLM_1068	CLM_1068	hemC	hemC	1117795	1118667	+	hydroxymethylbilane synthase	identified by match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212	gene	gene1028	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1068
CLM_1069	CLM_1069		CLM_1069	1118803	1120263	+	uroporphyrinogen III synthase/methyltransferase	cobA/hemD	gene	gene1029	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1069
CLM_1070	CLM_1070		CLM_1070	1120408	1120590	+	conserved hypothetical protein		gene	gene1030	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1070
CLM_1071	CLM_1071	hemB	hemB	1120852	1121826	+	porphobilinogen synthase	identified by match to protein family HMM PF00490	gene	gene1031	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1071
CLM_1072	CLM_1072	cobB	cobB	1122059	1123381	+	cobyrinic acid a%2Cc-diamide synthase	identified by match to protein family HMM PF01656%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR00379	gene	gene1032	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1072
CLM_1073	CLM_1073	cobH	cobH	1123406	1124032	+	precorrin-8X methylmutase	identified by match to protein family HMM PF02570	gene	gene1033	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1073
CLM_1074	CLM_1074		CLM_1074	1124330	1124860	+	acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene1034	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1074
CLM_1075	CLM_1075		CLM_1075	1124920	1125639	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1035	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1075
CLM_1076	CLM_1076		CLM_1076	1125938	1126192	+	HD domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1036	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1076
CLM_1077	CLM_1077		CLM_1077	1126615	1127379	+	beta-lactamase domain protein	identified by match to protein family HMM PF00753	gene	gene1037	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1077
CLM_1078	CLM_1078		CLM_1078	1127732	1128466	+	transporter		gene	gene1038	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1078
CLM_1079	CLM_1079		CLM_1079	1128518	1128943	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1039	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1079
CLM_1080	CLM_1080		CLM_1080	1129195	1129896	+	Fic family protein	identified by match to protein family HMM PF02661	gene	gene1040	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1080
CLM_1081	CLM_1081		CLM_1081	1129925	1130446	+	nitroreductase family protein	identified by match to protein family HMM PF00881	gene	gene1041	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1081
CLM_1082	CLM_1082		CLM_1082	1130516	1130809	+	membrane protein		gene	gene1042	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1082
CLM_1084	CLM_1084		CLM_1084	1130902	1131434	+		conserved hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:AAY60403.1	pseudogene	gene1043	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1084
CLM_1085	CLM_1085		CLM_1085	1131001	1131495	+	glutamate-rich protein GrpB	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF04229	gene	gene1044	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1085
CLM_1086	CLM_1086	cbiD	cbiD	1131508	1132587	+	cobalamin biosynthesis protein CbiD	identified by match to protein family HMM PF01888%3B match to protein family HMM TIGR00312	gene	gene1045	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1086
CLM_1087	CLM_1087	cbiE	cbiE	1132787	1133458	+	precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR02467	gene	gene1046	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1087
CLM_1088	CLM_1088		CLM_1088	1133421	1133540	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1047	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1088
CLM_1089	CLM_1089		CLM_1089	1133642	1134022	+	conserved hypothetical protein		gene	gene1048	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1089
CLM_1090	CLM_1090	cbiT	cbiT	1134086	1134667	+	precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit	identified by match to protein family HMM TIGR01444%3B match to protein family HMM TIGR02469	gene	gene1049	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1090
CLM_1091	CLM_1091		CLM_1091	1134690	1135241	+	putative membrane protein		gene	gene1050	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1091
CLM_1092	CLM_1092		CLM_1092	1135715	1135906	+	conserved domain protein		gene	gene1051	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1092
CLM_1093	CLM_1093		CLM_1093	1136064	1136516	+	conserved hypothetical protein		gene	gene1052	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1093
CLM_1094	CLM_1094		CLM_1094	1136576	1136917	+	conserved hypothetical protein		gene	gene1053	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1094
CLM_1095	CLM_1095		CLM_1095	1136985	1137533	+	acetyltransferase%2C gnat family	identified by match to protein family HMM PF00583	gene	gene1054	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1095
CLM_1096	CLM_1096		CLM_1096	1137583	1137975	+	conserved hypothetical protein		gene	gene1055	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1096
CLM_1097	CLM_1097	cobI	cobI	1138066	1138782	+	precorrin-2 C(20)-methyltransferase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01467	gene	gene1056	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1097
CLM_1098	CLM_1098	cobM	cobM	1139071	1139829	+	precorrin-4 C(11)-methyltransferase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01465	gene	gene1057	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1098
CLM_1099	CLM_1099	cbiG	cbiG	1139807	1140928	+	cobalamin biosynthesis protein CbiG	identified by match to protein family HMM PF01890	gene	gene1058	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1099
CLM_1100	CLM_1100	cobJ	cobJ	1141062	1141793	+	precorrin-3B C(17)-methyltransferase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01466	gene	gene1059	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1100
CLM_1101	CLM_1101	cobK	cobK	1141970	1142737	+	precorrin-6A reductase	identified by match to protein family HMM PF02571%3B match to protein family HMM TIGR00715	gene	gene1060	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1101
CLM_1102	CLM_1102		CLM_1102	1142817	1143305	+	putative membrane protein		gene	gene1061	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1102
CLM_1103	CLM_1103	cbiK	cbiK	1143521	1144303	+	anaerobic sirohydrochlorin cobaltochelatase	identified by match to protein family HMM PF01903%3B match to protein family HMM PF06180	gene	gene1062	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1103
CLM_1104	CLM_1104		CLM_1104	1144316	1145155	+	putative kinase	identified by match to protein family HMM PF00288	gene	gene1063	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1104
CLM_1105	CLM_1105	cobO	cobO	1145282	1145803	+	cob(I)yrinic acid a%2Cc-diamide adenosyltransferase	identified by match to protein family HMM PF02572%3B match to protein family HMM TIGR00708	gene	gene1064	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1105
CLM_1106	CLM_1106		CLM_1106	1146056	1146745	+	transcriptional regulator%2C Crp/Fnr family	identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325	gene	gene1065	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1106
CLM_1107	CLM_1107		CLM_1107	1146845	1147609	+	formate/nitrite transporter family protein	identified by match to protein family HMM PF01226	gene	gene1066	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1107
CLM_1108	CLM_1108	asrA	asrA	1147629	1148657	+	sulfite reductase%2C subunit A	identified by match to protein family HMM TIGR02910	gene	gene1067	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1108
CLM_1109	CLM_1109	asrB	asrB	1148644	1149441	+	sulfite reductase%2C subunit B	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM TIGR02911	gene	gene1068	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1109
CLM_1110	CLM_1110	arsC	arsC	1149454	1150419	+	anaerobic sulfite reductase%2C subunit C	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02912	gene	gene1069	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1110
CLM_1111	CLM_1111		CLM_1111	1150765	1151787	+	molybdopterin biosynthesis protein	identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177	gene	gene1070	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1111
CLM_1112	CLM_1112		CLM_1112	1152537	1152674	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1071	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1112
CLM_1113	CLM_1113		CLM_1113	1153103	1154122	+	putative membrane protein		gene	gene1072	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1113
CLM_1114	CLM_1114		CLM_1114	1154143	1155030	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1073	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1114
CLM_1115	CLM_1115		CLM_1115	1155034	1155810	+	putative membrane protein		gene	gene1074	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1115
CLM_1116	CLM_1116		CLM_1116	1156460	1157182	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1075	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1116
CLM_1117	CLM_1117		CLM_1117	1157172	1158593	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene1076	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1117
CLM_1118	CLM_1118		CLM_1118	1159076	1159846	-	iron chelate uptake ABC transporter%2C FeCT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1077	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1118
CLM_1119	CLM_1119		CLM_1119	1159847	1160926	-	iron chelate uptake ABC transporter%2C FeCT family%2C permease protein	identified by match to protein family HMM PF00950%3B match to protein family HMM PF01032%3B match to protein family HMM PF02653	gene	gene1078	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1119
CLM_1120	CLM_1120		CLM_1120	1160927	1161949	-	putative iron chelate uptake ABC transporter%2C solute-binding protein	identified by match to protein family HMM PF01497	gene	gene1079	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1120
CLM_1122	CLM_1122		CLM_1122	1162606	1162746	+	pentapeptide repeat family protein		gene	gene1080	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1122
CLM_1123	CLM_1123		CLM_1123	1163032	1163724	-	HAD superfamily (subfamily IA) hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02254	gene	gene1081	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1123
CLM_1124	CLM_1124		CLM_1124	1163755	1164045	-	conserved hypothetical protein		gene	gene1082	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1124
CLM_1125	CLM_1125		CLM_1125	1164147	1164521	+	conserved domain protein		gene	gene1083	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1125
CLM_1126	CLM_1126		CLM_1126	1164794	1165672	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126	gene	gene1084	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1126
CLM_1127	CLM_1127		CLM_1127	1165793	1166911	+	threonine synthase	identified by match to protein family HMM PF00291	gene	gene1085	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1127
CLM_1128	CLM_1128		CLM_1128	1167593	1168057	+	putative nitroimidazole resistance protein NimA	identified by similarity to GB:CAA50581.1%3B match to protein family HMM PF01243	gene	gene1086	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1128
CLM_1129	CLM_1129		CLM_1129	1168283	1168453	-	transposase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1087	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1129
CLM_1130	CLM_1130		CLM_1130	1168860	1169033	-		transposase%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene1088	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1130
CLM_1131	CLM_1131	dhaKL	dhaKL	1169426	1171186	-	dihydroxyacetone kinase%2C DhaK/DhaL subunit	identified by similarity to SP:P76015%3B match to protein family HMM PF02733%3B match to protein family HMM PF02734%3B match to protein family HMM TIGR02363%3B match to protein family HMM TIGR02365	gene	gene1089	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1131
CLM_1132	CLM_1132	dhaD	dhaD	1171197	1172327	-	glycerol dehydrogenase	identified by similarity to SP:P45511%3B match to protein family HMM PF00465%3B match to protein family HMM PF01761	gene	gene1090	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1132
CLM_1133	CLM_1133		CLM_1133	1172848	1173885	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene1091	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1133
CLM_1134	CLM_1134		CLM_1134	1174331	1174795	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1092	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1134
CLM_1135	CLM_1135		CLM_1135	1175002	1175445	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1093	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1135
CLM_1136	CLM_1136		CLM_1136	1175598	1176191	+	conserved hypothetical protein	identified by match to protein family HMM PF07081	gene	gene1094	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1136
CLM_1137	CLM_1137		CLM_1137	1176255	1176458	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1095	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1137
CLM_1138	CLM_1138		CLM_1138	1176576	1177421	+	oxidoreductase%2C aldo/keto reductase family	identified by match to protein family HMM PF00248	gene	gene1096	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1138
CLM_1139	CLM_1139		CLM_1139	1177523	1177846	+	TfoX domain protein	identified by match to protein family HMM PF04993	gene	gene1097	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1139
CLM_1140	CLM_1140		CLM_1140	1177892	1178746	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1098	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1140
CLM_1141	CLM_1141		CLM_1141	1178984	1179235	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1099	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1141
CLM_1142	CLM_1142		CLM_1142	1179878	1179991	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1100	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1142
CLM_1144	CLM_1144		CLM_1144	1180489	1181457	+	NlpC/P60 family protein	identified by match to protein family HMM PF00877	gene	gene1101	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1144
CLM_1145	CLM_1145	add	add	1182462	1183469	-	adenosine deaminase	identified by match to protein family HMM PF00962%3B match to protein family HMM TIGR01430	gene	gene1102	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1145
CLM_1146	CLM_1146		CLM_1146	1184366	1186534	+	putative phage infection protein	identified by match to protein family HMM TIGR03061%3B match to protein family HMM TIGR03062	gene	gene1103	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1146
CLM_1147	CLM_1147		CLM_1147	1186560	1188719	+	putative phage infection protein	identified by match to protein family HMM PF01061%3B match to protein family HMM TIGR03061%3B match to protein family HMM TIGR03062	gene	gene1104	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1147
CLM_1148	CLM_1148		CLM_1148	1189132	1189434	-	conserved hypothetical protein		gene	gene1105	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1148
CLM_1149	CLM_1149		CLM_1149	1189640	1190395	+	putative membrane protein		gene	gene1106	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1149
CLM_1150	CLM_1150	recQ	recQ	1190639	1192768	+	ATP-dependent DNA helicase RecQ	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF00570%3B match to protein family HMM PF09382%3B match to protein family HMM TIGR00614%3B match to protein family HMM TIGR01389	gene	gene1107	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1150
CLM_1151	CLM_1151		CLM_1151	1192879	1193310	+	rubrerythrin family protein	identified by match to protein family HMM PF02915	gene	gene1108	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1151
CLM_1152	CLM_1152		CLM_1152	1193594	1194139	-	phosphodiesterase%2C MJ0936 family	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00040	gene	gene1109	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1152
CLM_1153	CLM_1153		CLM_1153	1194775	1195158	+	response regulator	identified by match to protein family HMM PF00072	gene	gene1110	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1153
CLM_1154	CLM_1154		CLM_1154	1195273	1197747	+	KWG leptospira repeat protein	identified by match to protein family HMM PF07656	gene	gene1111	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1154
CLM_1155	CLM_1155		CLM_1155	1198195	1198410	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1112	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1155
CLM_1156	CLM_1156		CLM_1156	1198412	1199230	+	conserved hypothetical protein		gene	gene1113	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1156
CLM_1157	CLM_1157		CLM_1157	1199230	1199835	+	putative anaerobic ribonucleoside-triphosphate reductase activating protein	identified by match to protein family HMM PF04055	gene	gene1114	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1157
CLM_1158	CLM_1158		CLM_1158	1199837	1201510	+	ATPase%2C AAA family	identified by match to protein family HMM PF00004	gene	gene1115	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1158
CLM_1159	CLM_1159		CLM_1159	1201525	1202295	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1116	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1159
CLM_1160	CLM_1160	lctP	lctP	1202776	1204299	+	L-lactate permease	identified by match to protein family HMM PF02652%3B match to protein family HMM PF03553%3B match to protein family HMM TIGR00795	gene	gene1117	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1160
CLM_1161	CLM_1161		CLM_1161	1204328	1205602	+	conserved hypothetical protein		gene	gene1118	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1161
CLM_1162	CLM_1162		CLM_1162	1205645	1206433	+	electron transfer flavoprotein%2C beta subunit/FixA family protein	identified by match to protein family HMM PF01012	gene	gene1119	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1162
CLM_1163	CLM_1163		CLM_1163	1206465	1207667	+	electron transfer flavoprotein%2C alpha subunit/FixB family protein	identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene1120	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1163
CLM_1164	CLM_1164		CLM_1164	1207728	1209125	+	putative glycolate oxidase	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913	gene	gene1121	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1164
CLM_1165	CLM_1165		CLM_1165	1209394	1209513	+	conserved hypothetical protein		gene	gene1122	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1165
CLM_1166	CLM_1166		CLM_1166	1209641	1210549	+	putative lipoprotein		gene	gene1123	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1166
CLM_1167	CLM_1167		CLM_1167	1210744	1211214	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1124	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1167
CLM_1168	CLM_1168		CLM_1168	1211216	1211761	+	putative cyclase	identified by match to protein family HMM PF04199	gene	gene1125	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1168
CLM_1169	CLM_1169		CLM_1169	1211912	1213096	-	pyridoxal-phosphate-dependent aminotransferase family	identified by similarity to SP:Q56232%3B match to protein family HMM PF00155	gene	gene1126	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1169
CLM_1170	CLM_1170		CLM_1170	1214025	1214603	-	putative cyclase	identified by match to protein family HMM PF04199	gene	gene1127	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1170
CLM_1171	CLM_1171		CLM_1171	1214762	1215286	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1128	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1171
CLM_1172	CLM_1172		CLM_1172	1215589	1216410	+	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376%3B match to protein family HMM PF06445	gene	gene1129	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1172
CLM_1173	CLM_1173		CLM_1173	1216625	1217323	+	B3/4 domain protein	identified by match to protein family HMM PF03483	gene	gene1130	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1173
CLM_1174	CLM_1174	aspS	aspS	1217599	1218888	-	aspartate--tRNA ligase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00458	gene	gene1131	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1174
CLM_1175	CLM_1175		CLM_1175	1219434	1219991	+	conserved hypothetical protein		gene	gene1132	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1175
CLM_1176	CLM_1176		CLM_1176	1219995	1220558	+	CDP-alcohol phosphatidyltransferase family protein	identified by match to protein family HMM PF01066	gene	gene1133	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1176
CLM_1177	CLM_1177		CLM_1177	1220820	1221434	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene1134	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1177
CLM_1178	CLM_1178		CLM_1178	1221450	1221938	+	conserved hypothetical protein		gene	gene1135	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1178
CLM_1179	CLM_1179		CLM_1179	1222033	1222722	-	HAD superfamily (subfamily IA) hydrolase%2C TIGR02254	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02254	gene	gene1136	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1179
CLM_1180	CLM_1180		CLM_1180	1223037	1223726	+	cyclic nucleotide-binding domain protein	identified by match to protein family HMM PF00027	gene	gene1137	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1180
CLM_1181	CLM_1181		CLM_1181	1223853	1224437	-	DJ-1/PfpI family protein	identified by match to protein family HMM PF01965	gene	gene1138	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1181
CLM_1182	CLM_1182		CLM_1182	1224593	1225486	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1139	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1182
CLM_1183	CLM_1183		CLM_1183	1225620	1226378	+	conserved hypothetical protein		gene	gene1140	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1183
CLM_1184	CLM_1184		CLM_1184	1226962	1227171	+	putative ferrous iron transport protein A	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF04023	gene	gene1141	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1184
CLM_1185	CLM_1185	feoA	feoA	1227188	1227409	+	ferrous iron transport protein A	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by similarity to SP:P0AEL3%3B match to protein family HMM PF04023	gene	gene1142	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1185
CLM_1186	CLM_1186	feoB	feoB	1227441	1229597	+	ferrous iron transport protein B	identified by similarity to SP:P33650%3B match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437	gene	gene1143	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1186
CLM_1187	CLM_1187		CLM_1187	1229618	1229764	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1144	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1187
CLM_1188	CLM_1188		CLM_1188	1230159	1230596	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1145	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1188
CLM_1189	CLM_1189		CLM_1189	1231063	1231863	+	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF02557	gene	gene1146	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1189
CLM_1190	CLM_1190	tlp	tlp	1232162	1232389	+	small%2C acid-soluble spore protein tlp	identified by match to protein family HMM TIGR03090	gene	gene1147	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1190
CLM_1191	CLM_1191		CLM_1191	1232607	1233293	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1148	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1191
CLM_1192	CLM_1192		CLM_1192	1233294	1234649	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1149	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1192
CLM_1193	CLM_1193		CLM_1193	1234753	1234887	+	conserved hypothetical protein		gene	gene1150	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1193
CLM_1194	CLM_1194		CLM_1194	1235184	1236443	+	cytochrome P450	identified by match to protein family HMM PF00067	gene	gene1151	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1194
CLM_1195	CLM_1195		CLM_1195	1236583	1238391	-	heavy metal-associated domain protein	identified by match to protein family HMM PF00403%3B match to protein family HMM PF02683	gene	gene1152	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1195
CLM_1196	CLM_1196		CLM_1196	1238929	1239165	+	conserved hypothetical protein		gene	gene1153	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1196
CLM_1197	CLM_1197		CLM_1197	1239435	1240136	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1154	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1197
CLM_1198	CLM_1198		CLM_1198	1240136	1241542	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1155	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1198
CLM_1199	CLM_1199		CLM_1199	1241882	1242568	-	conserved hypothetical protein		gene	gene1156	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1199
CLM_1200	CLM_1200		CLM_1200	1242804	1243442	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene1157	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1200
CLM_1201	CLM_1201		CLM_1201	1243808	1244761	+	iron chelate uptake ABC transporter%2C FeCT family%2C permease protein	identified by match to protein family HMM PF01032	gene	gene1158	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1201
CLM_1202	CLM_1202		CLM_1202	1244751	1245701	+	iron chelate uptake ABC transporter%2C FeCT family%2C permease protein	identified by match to protein family HMM PF01032	gene	gene1159	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1202
CLM_1203	CLM_1203		CLM_1203	1245698	1246453	+	iron chelate uptake ABC transporter%2C FeCT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1160	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1203
CLM_1204	CLM_1204		CLM_1204	1246527	1247471	+	iron chelate uptake ABC transporter%2C FeCT family%2C solute-binding protein	identified by match to protein family HMM PF01497	gene	gene1161	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1204
CLM_1205	CLM_1205		CLM_1205	1247674	1248675	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene1162	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1205
CLM_1206	CLM_1206		CLM_1206	1249191	1250993	+	ABC transporter ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene1163	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1206
CLM_1207	CLM_1207		CLM_1207	1250995	1252710	+	ABC transport ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF02463	gene	gene1164	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1207
CLM_1208	CLM_1208		CLM_1208	1252917	1254290	-	sensor histidine kinase		gene	gene1165	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1208
CLM_1209	CLM_1209		CLM_1209	1254293	1255000	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene1166	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1209
CLM_1210	CLM_1210		CLM_1210	1255088	1255957	-	conserved hypothetical protein		gene	gene1167	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1210
CLM_1212	CLM_1212		CLM_1212	1256192	1256616	-		glycosyl transferase%2C group 1 family protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene1168	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1212
CLM_1213	CLM_1213		CLM_1213	1257054	1260215	+	BNR/Asp-box repeat proetin	identified by match to protein family HMM PF01345%3B match to protein family HMM TIGR01451	gene	gene1169	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1213
CLM_1214	CLM_1214	chiA	chiA	1260403	1261902	+	chitinase A	identified by similarity to GB:BAB16890.1%3B match to protein family HMM PF00041%3B match to protein family HMM PF00704	gene	gene1170	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1214
CLM_1215	CLM_1215		CLM_1215	1262230	1264272	+	conserved hypothetical protein	identified by match to protein family HMM PF03190	gene	gene1171	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1215
CLM_1216	CLM_1216		CLM_1216	1264595	1265590	+	conserved hypothetical protein	identified by match to protein family HMM PF06081	gene	gene1172	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1216
CLM_1217	CLM_1217		CLM_1217	1265755	1266339	+	conserved hypothetical protein		gene	gene1173	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1217
CLM_1218	CLM_1218		CLM_1218	1267156	1267521	+	transcriptional regulator%2C PadR family	identified by match to protein family HMM PF03551	gene	gene1174	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1218
CLM_1219	CLM_1219		CLM_1219	1267524	1268381	+	conserved hypothetical protein		gene	gene1175	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1219
CLM_1220	CLM_1220		CLM_1220	1268983	1269684	-	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene1176	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1220
CLM_1221	CLM_1221		CLM_1221	1269800	1270606	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene1177	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1221
CLM_1222	CLM_1222		CLM_1222	1271423	1272349	+	peptidase M28	identified by match to protein family HMM PF04389	gene	gene1178	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1222
CLM_1223	CLM_1223		CLM_1223	1272465	1272818	+	bacteriocin	identified by match to protein family HMM PF08239	gene	gene1179	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1223
CLM_1224	CLM_1224		CLM_1224	1273207	1275126	-	drug resistance ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1180	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1224
CLM_1225	CLM_1225		CLM_1225	1275764	1276978	+	putative membrane protein		gene	gene1181	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1225
CLM_1226	CLM_1226		CLM_1226	1277364	1277699	+	ArsC family protein	identified by match to protein family HMM PF03960	gene	gene1182	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1226
CLM_1227	CLM_1227		CLM_1227	1277946	1278839	+	radical SAM domain protein		gene	gene1183	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1227
CLM_1228	CLM_1228		CLM_1228	1279048	1280466	+	FAD-dependent oxidoreductase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF04324	gene	gene1184	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1228
CLM_1229	CLM_1229		CLM_1229	1280522	1281778	+	pyridine nucleotide-disulphide oxidoreductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992	gene	gene1185	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1229
CLM_1230	CLM_1230		CLM_1230	1281781	1282149	+	conserved hypothetical protein	identified by match to protein family HMM PF07892	gene	gene1186	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1230
CLM_1231	CLM_1231	glpT	glpT	1282238	1283575	+	glycerol-3-phosphate transporter	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00712%3B match to protein family HMM TIGR00881	gene	gene1187	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1231
CLM_1232	CLM_1232	argS	argS	1284158	1285849	+	arginine--tRNA ligase	identified by match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456	gene	gene1188	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1232
CLM_1233	CLM_1233	arcT	arcT	1286248	1287378	+	dipeptidase	identified by similarity to GB:AAR30326.1%3B match to protein family HMM PF00155	gene	gene1189	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1233
CLM_1234	CLM_1234		CLM_1234	1287517	1287897	+	CBS domain protein	identified by match to protein family HMM PF00571	gene	gene1190	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1234
CLM_1235	CLM_1235		CLM_1235	1288106	1288264	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1191	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1235
CLM_1236	CLM_1236	feoB	feoB	1288290	1290053	-	ferrous iron transport protein B	identified by match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437	gene	gene1192	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1236
CLM_1237	CLM_1237	feoA	feoA	1290068	1290289	-	ferrous ion transport protein A	identified by match to protein family HMM PF04023	gene	gene1193	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1237
CLM_1238	CLM_1238		CLM_1238	1290615	1291010	+	conserved hypothetical protein	identified by match to protein family HMM PF07238	gene	gene1194	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1238
CLM_1239	CLM_1239		CLM_1239	1291222	1291947	+	haloacid dehalogenase%2C IB family protein	identified by match to protein family HMM TIGR01488%3B match to protein family HMM TIGR01490	gene	gene1195	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1239
CLM_1240	CLM_1240		CLM_1240	1292856	1294439	+	putative glycosyl hydrolase	identified by match to protein family HMM PF02839	gene	gene1196	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1240
CLM_1241	CLM_1241		CLM_1241	1294851	1295318	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1197	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1241
CLM_1243	CLM_1243		CLM_1243	1295596	1296552	+	methionine ABC transporter%2C MUT family%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF09383	gene	gene1198	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1243
CLM_1244	CLM_1244		CLM_1244	1296554	1297195	+	methionine ABC transporter%2C MUT family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1199	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1244
CLM_1245	CLM_1245		CLM_1245	1297250	1298062	+	lipoprotein%2C NLPA family	identified by match to protein family HMM PF03180	gene	gene1200	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1245
CLM_1246	CLM_1246		CLM_1246	1298250	1299062	+	lipoprotein%2C NLPA family	identified by match to protein family HMM PF03180	gene	gene1201	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1246
CLM_1247	CLM_1247		CLM_1247	1299291	1300457	+	amidohydrolase family protein	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891	gene	gene1202	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1247
CLM_1248	CLM_1248		CLM_1248	1301029	1301658	+	conserved hypothetical protein		gene	gene1203	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1248
CLM_1249	CLM_1249		CLM_1249	1302164	1302856	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene1204	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1249
CLM_1250	CLM_1250		CLM_1250	1303101	1303964	+	putative membrane protein	identified by match to protein family HMM PF02588	gene	gene1205	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1250
CLM_1251	CLM_1251		CLM_1251	1304173	1304385	+	conserved domain protein		gene	gene1206	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1251
CLM_1252	CLM_1252	gltX	gltX	1304610	1306067	-	glutamate--tRNA ligase	identified by match to protein family HMM PF00749%3B match to protein family HMM TIGR00464	gene	gene1207	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1252
CLM_1253	CLM_1253	gap	gap	1306492	1307508	+	glyceraldehyde-3-phosphate dehydrogenase%2C type I	identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534	gene	gene1208	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1253
CLM_1254	CLM_1254		CLM_1254	1307753	1309261	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521	gene	gene1209	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1254
CLM_1255	CLM_1255		CLM_1255	1309627	1309776	+	conserved domain protein		gene	gene1210	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1255
CLM_1256	CLM_1256		CLM_1256	1309919	1310563	+	HD domain protein	identified by match to protein family HMM PF01966	gene	gene1211	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1256
CLM_1257	CLM_1257		CLM_1257	1310619	1311989	+	aldehyde dehydrogenase family protein	identified by match to protein family HMM PF00171	gene	gene1212	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1257
CLM_1258	CLM_1258		CLM_1258	1312072	1313469	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene1213	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1258
CLM_1259	CLM_1259		CLM_1259	1314066	1315442	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene1214	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1259
CLM_1260	CLM_1260		CLM_1260	1315880	1316317	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1215	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1260
CLM_1261	CLM_1261		CLM_1261	1316335	1317702	+	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943%3B match to protein family HMM TIGR00797	gene	gene1216	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1261
CLM_1262	CLM_1262		CLM_1262	1318121	1318666	+	TPR domain protein		gene	gene1217	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1262
CLM_1263	CLM_1263		CLM_1263	1318765	1319742	+	conserved hypothetical protein		gene	gene1218	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1263
CLM_1264	CLM_1264		CLM_1264	1320545	1321783	+	putative ABC transporter%2C solute-binding protein		gene	gene1219	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1264
CLM_1266	CLM_1266		CLM_1266	1321785	1322657	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1220	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1266
CLM_1267	CLM_1267		CLM_1267	1322676	1323482	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1221	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1267
CLM_1268	CLM_1268		CLM_1268	1323494	1324513	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1222	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1268
CLM_1269	CLM_1269		CLM_1269	1324816	1325775	+	conserved hypothetical protein		gene	gene1223	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1269
CLM_1270	CLM_1270		CLM_1270	1325879	1326430	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1224	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1270
CLM_1271	CLM_1271		CLM_1271	1326440	1326775	+	conserved hypothetical protein		gene	gene1225	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1271
CLM_1272	CLM_1272		CLM_1272	1326851	1327129	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1226	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1272
CLM_1273	CLM_1273		CLM_1273	1327130	1327726	+	putative membrane protein	identified by match to protein family HMM PF03956	gene	gene1227	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1273
CLM_1274	CLM_1274	maa	maa	1328014	1328568	+	maltose O-acetyltransferase	identified by similarity to SP:P77791%3B match to protein family HMM PF00132	gene	gene1228	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1274
CLM_1275	CLM_1275	birA	birA	1328858	1329841	-	birA bifunctional protein	identified by match to protein family HMM PF02237%3B match to protein family HMM PF03099%3B match to protein family HMM PF08279%3B match to protein family HMM TIGR00121	gene	gene1229	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1275
CLM_1276	CLM_1276		CLM_1276	1330005	1330208	+	putative heavy metal-binding protein		gene	gene1230	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1276
CLM_1277	CLM_1277		CLM_1277	1330484	1330921	+	CBS domain protein	identified by match to protein family HMM PF00571	gene	gene1231	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1277
CLM_1278	CLM_1278		CLM_1278	1331081	1332514	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene1232	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1278
CLM_1279	CLM_1279		CLM_1279	1332626	1332751	-	conserved hypothetical protein		gene	gene1233	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1279
CLM_1280	CLM_1280		CLM_1280	1333381	1334160	+	conserved domain protein		gene	gene1234	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1280
CLM_1281	CLM_1281	mgtE	mgtE	1334661	1335995	+	magnesium transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400	gene	gene1235	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1281
CLM_1282	CLM_1282		CLM_1282	1337004	1338077	+	aminotransferase%2C class V	identified by match to protein family HMM PF00266	gene	gene1236	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1282
CLM_1283	CLM_1283		CLM_1283	1338303	1339247	+	D-isomer specific 2-hydroxyacid dehydrogenase family protein	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene1237	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1283
CLM_1284	CLM_1284		CLM_1284	1339225	1340553	+	conserved hypothetical protein	identified by match to protein family HMM PF06245	gene	gene1238	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1284
CLM_1285	CLM_1285		CLM_1285	1341206	1342396	+	metallo-beta-lactamase family protein/flavodoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM PF00753	gene	gene1239	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1285
CLM_1286	CLM_1286		CLM_1286	1342563	1346852	+	putative CoA-substrate-specific enzyme activase	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene1240	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1286
CLM_1287	CLM_1287		CLM_1287	1346926	1348440	-	choline/carnitine/betaine transporter	identified by match to protein family HMM PF02028%3B match to protein family HMM TIGR00842	gene	gene1241	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1287
CLM_1288	CLM_1288		CLM_1288	1348782	1349408	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF02080	gene	gene1242	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1288
CLM_1289	CLM_1289		CLM_1289	1349519	1350019	+	conserved hypothetical protein		gene	gene1243	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1289
CLM_1290	CLM_1290		CLM_1290	1350318	1350878	+	pncA family protein	identified by similarity to SP:P21369%3B match to protein family HMM PF00857	gene	gene1244	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1290
CLM_1291	CLM_1291		CLM_1291	1351037	1351348	+	rhodanese domain protein	identified by match to protein family HMM PF00581	gene	gene1245	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1291
CLM_1292	CLM_1292		CLM_1292	1351424	1351888	+	conserved hypothetical protein		gene	gene1246	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1292
CLM_1293	CLM_1293		CLM_1293	1352165	1352365	+	conserved hypothetical protein		gene	gene1247	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1293
CLM_1294	CLM_1294		CLM_1294	1352543	1353454	+	tetratricopeptide repeat family protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene1248	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1294
CLM_1295	CLM_1295	xpt	xpt	1353615	1354187	+	xanthine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01744	gene	gene1249	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1295
CLM_1296	CLM_1296		CLM_1296	1354485	1355066	+	conserved domain protein		gene	gene1250	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1296
CLM_1297	CLM_1297		CLM_1297	1355362	1356744	+	putative thiosulfate sulfurtransferase	identified by match to protein family HMM PF00581	gene	gene1251	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1297
CLM_1298	CLM_1298		CLM_1298	1356943	1357365	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1252	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1298
CLM_1299	CLM_1299		CLM_1299	1357709	1358812	+	putative transporter	identified by match to protein family HMM PF01594	gene	gene1253	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1299
CLM_1300	CLM_1300		CLM_1300	1358992	1359321	+	MazG family protein	identified by match to protein family HMM PF03819	gene	gene1254	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1300
CLM_1301	CLM_1301		CLM_1301	1359458	1361197	+	conserved hypothetical protein		gene	gene1255	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1301
CLM_1302	CLM_1302		CLM_1302	1361336	1361503	-	conserved hypothetical protein		gene	gene1256	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1302
CLM_1303	CLM_1303		CLM_1303	1361775	1361915	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1257	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1303
CLM_1304	CLM_1304		CLM_1304	1362097	1363296	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1258	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1304
CLM_1305	CLM_1305		CLM_1305	1363689	1364735	+	ABC transporter%2C substrate-binding protein	identified by match to protein family HMM PF01547	gene	gene1259	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1305
CLM_1306	CLM_1306		CLM_1306	1364737	1366425	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1260	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1306
CLM_1307	CLM_1307		CLM_1307	1366388	1367323	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1261	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1307
CLM_1308	CLM_1308		CLM_1308	1367388	1368182	-	putative membrane protein		gene	gene1262	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1308
CLM_1309	CLM_1309		CLM_1309	1368483	1369634	+	conserved hypothetical protein		gene	gene1263	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1309
CLM_1310	CLM_1310	rpsA	rpsA	1370026	1371189	+	ribosomal protein S1	identified by match to protein family HMM PF00575	gene	gene1264	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1310
CLM_1311	CLM_1311		CLM_1311	1371372	1371791	+	thioesterase family protein	identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051	gene	gene1265	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1311
CLM_1312	CLM_1312		CLM_1312	1371963	1372379	+	conserved hypothetical protein		gene	gene1266	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1312
CLM_1313	CLM_1313		CLM_1313	1373250	1374257	+	putative ABC transporter%2C substrate-binding protein	identified by match to protein family HMM PF04392	gene	gene1267	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1313
CLM_1314	CLM_1314		CLM_1314	1374257	1375162	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene1268	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1314
CLM_1315	CLM_1315		CLM_1315	1375125	1375919	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1269	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1315
CLM_1316	CLM_1316		CLM_1316	1376248	1376550	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1270	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1316
CLM_1317	CLM_1317		CLM_1317	1376983	1378626	+	aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155	gene	gene1271	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1317
CLM_1318	CLM_1318		CLM_1318	1378753	1379634	-	UAA transporter family	identified by match to protein family HMM PF00892%3B match to protein family HMM PF03151%3B match to protein family HMM PF08449	gene	gene1272	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1318
CLM_1319	CLM_1319		CLM_1319	1380220	1381317	+	kinase%2C PfkB family	identified by match to protein family HMM PF00294%3B match to protein family HMM PF08279	gene	gene1273	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1319
CLM_1320	CLM_1320		CLM_1320	1381311	1382234	+	indigoidine synthase A family protein	identified by match to protein family HMM PF04227	gene	gene1274	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1320
CLM_1321	CLM_1321	panE	panE	1382726	1383637	+	2-dehydropantoate 2-reductase	identified by match to protein family HMM PF02558%3B match to protein family HMM PF08546%3B match to protein family HMM TIGR00745	gene	gene1275	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1321
CLM_1322	CLM_1322		CLM_1322	1383944	1384576	+	putative methenyltetrahydrofolate cyclohydrolase	identified by similarity to SP:Q49135%3B match to protein family HMM PF04961	gene	gene1276	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1322
CLM_1323	CLM_1323	folD	folD	1384576	1385424	+	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	identified by similarity to SP:P54382%3B match to protein family HMM PF00763%3B match to protein family HMM PF02882	gene	gene1277	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1323
CLM_1324	CLM_1324		CLM_1324	1385718	1386512	+	HAD hydrolase%2C IIB family	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene1278	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1324
CLM_1325	CLM_1325		CLM_1325	1386739	1387245	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1279	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1325
CLM_1326	CLM_1326		CLM_1326	1387426	1387569	+	conserved hypothetical protein		gene	gene1280	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1326
CLM_1327	CLM_1327		CLM_1327	1387686	1388417	+	putative membrane protein		gene	gene1281	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1327
CLM_1328	CLM_1328		CLM_1328	1388537	1389346	+	zinc transporter%2C ZIP family	identified by match to protein family HMM PF02535	gene	gene1282	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1328
CLM_1329	CLM_1329		CLM_1329	1390018	1390455	+	rrf2 family protein	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene1283	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1329
CLM_1330	CLM_1330	cysK	cysK	1390784	1391713	+	cysteine synthase A	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139	gene	gene1284	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1330
CLM_1331	CLM_1331		CLM_1331	1391758	1392426	+	amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene1285	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1331
CLM_1332	CLM_1332		CLM_1332	1392461	1393285	+	polar amino acid uptake ABC transporter%2C PAAT family%2C amino acid-binding protein	identified by match to protein family HMM PF00497	gene	gene1286	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1332
CLM_1333	CLM_1333		CLM_1333	1393386	1394516	+	aminotransferase%2C class V	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212	gene	gene1287	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1333
CLM_1334	CLM_1334		CLM_1334	1394588	1395388	+	conserved hypothetical protein TIGR00268	identified by match to protein family HMM PF01171%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00268	gene	gene1288	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1334
CLM_1335	CLM_1335		CLM_1335	1395543	1395671	+	conserved hypothetical protein		gene	gene1289	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1335
CLM_1336	CLM_1336	trmU	trmU	1395787	1396857	+	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF03054%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00420	gene	gene1290	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1336
CLM_1337	CLM_1337		CLM_1337	1396935	1397147	-	conserved hypothetical protein		gene	gene1291	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1337
CLM_1338	CLM_1338		CLM_1338	1397419	1398138	+	DNA-binding response regulator%2C LytTr family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene1292	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1338
CLM_1340	CLM_1340		CLM_1340	1398135	1399478	+	sensor histidine kinase	identified by match to protein family HMM PF02518	gene	gene1293	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1340
CLM_1341	CLM_1341	bcrA	bcrA	1399852	1400775	+	bacitracin ABC transporter%2C ATP-binding protein BcrA	identified by match to protein family HMM PF00005	gene	gene1294	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1341
CLM_1342	CLM_1342		CLM_1342	1400768	1401511	+	putative membrane protein		gene	gene1295	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1342
CLM_1343	CLM_1343		CLM_1343	1401934	1403820	+	glycerophosphoryl diester phosphodiesterase family protein	identified by match to protein family HMM PF03009	gene	gene1296	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1343
CLM_1344	CLM_1344		CLM_1344	1404175	1404339	+	conserved hypothetical protein		gene	gene1297	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1344
CLM_1345	CLM_1345		CLM_1345	1404379	1407897	-	pyruvate ferredoxin oxidoreductase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176	gene	gene1298	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1345
CLM_1346	CLM_1346		CLM_1346	1407995	1408135	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1299	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1346
CLM_1347	CLM_1347		CLM_1347	1408272	1408733	+	conserved hypothetical protein	identified by match to protein family HMM PF08922	gene	gene1300	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1347
CLM_1348	CLM_1348		CLM_1348	1409033	1410508	+	conserved hypothetical protein	identified by match to protein family HMM PF02696	gene	gene1301	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1348
CLM_1349	CLM_1349		CLM_1349	1411097	1412824	+	amine oxidase%2C flavin-containing	identified by match to protein family HMM PF01593	gene	gene1302	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1349
CLM_1351	CLM_1351		CLM_1351	1413069	1413959	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene1303	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1351
CLM_1352	CLM_1352		CLM_1352	1414159	1415535	+	sugar transporter	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00792	gene	gene1304	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1352
CLM_1353	CLM_1353		CLM_1353	1415549	1416877	+	O-glycosyl hydrolase%2C family 30	identified by match to protein family HMM PF02055	gene	gene1305	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1353
CLM_1354	CLM_1354		CLM_1354	1416941	1417882	+	ROK family protein	identified by match to protein family HMM PF00480	gene	gene1306	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1354
CLM_1355	CLM_1355		CLM_1355	1417885	1419330	+	putative beta-glucosidase	identified by match to protein family HMM PF00232	gene	gene1307	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1355
CLM_1356	CLM_1356		CLM_1356	1419998	1421626	+	beta-amylase	identified by similarity to SP:P19584%3B match to protein family HMM PF00686%3B match to protein family HMM PF01373	gene	gene1308	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1356
CLM_1358	CLM_1358	tyrS	tyrS	1422265	1423467	+	tyrosine--tRNA ligase	identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234	gene	gene1309	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1358
CLM_1359	CLM_1359		CLM_1359	1423748	1424119	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392	gene	gene1310	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1359
CLM_1360	CLM_1360		CLM_1360	1424112	1424984	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1311	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1360
CLM_1361	CLM_1361		CLM_1361	1424985	1425731	+	putative membrane protein		gene	gene1312	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1361
CLM_1362	CLM_1362		CLM_1362	1425867	1426238	-	conserved hypothetical protein		gene	gene1313	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1362
CLM_1363	CLM_1363		CLM_1363	1426294	1426485	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1314	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1363
CLM_1364	CLM_1364		CLM_1364	1426576	1427469	+	conserved hypothetical protein		gene	gene1315	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1364
CLM_1365	CLM_1365		CLM_1365	1427658	1430009	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1316	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1365
CLM_1367	CLM_1367		CLM_1367	1430087	1431601	+	glycosyl hydrolase%2C family 18	identified by match to protein family HMM PF00704%3B match to protein family HMM PF01476%3B match to protein family HMM PF08239	gene	gene1317	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1367
CLM_1368	CLM_1368		CLM_1368	1431775	1433034	+	putative sensory box-containing diguanylate cyclase	identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1318	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1368
CLM_1369	CLM_1369	sdhB	sdhB	1433434	1434108	+	L-serine dehydratase%2C iron-sulfur-dependent%2C beta subunit	identified by match to protein family HMM PF01842%3B match to protein family HMM PF03315%3B match to protein family HMM TIGR00719	gene	gene1319	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1369
CLM_1370	CLM_1370	sdhA	sdhA	1434121	1435011	+	L-serine dehydratase%2C iron-sulfur-dependent%2C alpha subunit	identified by match to protein family HMM PF03313%3B match to protein family HMM TIGR00718	gene	gene1320	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1370
CLM_1371	CLM_1371		CLM_1371	1435145	1435348	-		methyl-accepting chemotaxis protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:P39215	pseudogene	gene1321	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1371
CLM_1372	CLM_1372		CLM_1372	1435435	1435644	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1322	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1372
CLM_1373	CLM_1373		CLM_1373	1435803	1435946	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1323	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1373
CLM_1374	CLM_1374		CLM_1374	1436030	1436149	+	conserved hypothetical protein		gene	gene1324	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1374
CLM_1375	CLM_1375		CLM_1375	1436219	1436803	+	conserved hypothetical protein		gene	gene1325	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1375
CLM_1376	CLM_1376		CLM_1376	1436825	1437793	-	dipeptidase family protein	identified by match to protein family HMM PF01244	gene	gene1326	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1376
CLM_1377	CLM_1377		CLM_1377	1438178	1438870	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1327	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1377
CLM_1378	CLM_1378		CLM_1378	1438976	1440259	-	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene1328	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1378
CLM_1379	CLM_1379		CLM_1379	1440261	1441076	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1329	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1379
CLM_1380	CLM_1380		CLM_1380	1441113	1441787	-	putative oligopeptide ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1330	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1380
CLM_1381	CLM_1381		CLM_1381	1441960	1442808	-	putative oligopeptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1331	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1381
CLM_1382	CLM_1382		CLM_1382	1442814	1443767	-	putative oligopeptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1332	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1382
CLM_1383	CLM_1383		CLM_1383	1443966	1445564	-	putative oligopeptide ABC transporter%2C oligopeptide-binding protein	identified by match to protein family HMM PF00496	gene	gene1333	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1383
CLM_1384	CLM_1384		CLM_1384	1445855	1446016	+	conserved hypothetical protein		gene	gene1334	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1384
CLM_1385	CLM_1385	cotJB	cotJB	1446050	1446322	+	CotJB protein	identified by similarity to SP:Q45537	gene	gene1335	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1385
CLM_1386	CLM_1386	cotJC	cotJC	1446353	1446925	+	CotJC protein	identified by similarity to SP:Q45538%3B match to protein family HMM PF05067	gene	gene1336	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1386
CLM_1387	CLM_1387		CLM_1387	1447155	1448174	+	conserved hypothetical protein		gene	gene1337	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1387
CLM_1388	CLM_1388		CLM_1388	1448191	1449255	+	conserved hypothetical protein		gene	gene1338	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1388
CLM_1389	CLM_1389		CLM_1389	1449849	1450340	+	conserved hypothetical protein	identified by match to protein family HMM PF04525	gene	gene1339	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1389
CLM_1390	CLM_1390		CLM_1390	1450581	1450973	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1340	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1390
CLM_1391	CLM_1391	dut	dut	1451320	1451946	+	deoxyuridine 5'-triphosphate nucleotidohydrolase	identified by match to protein family HMM PF00692	gene	gene1341	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1391
CLM_1392	CLM_1392		CLM_1392	1452007	1452198	-	small acid-soluble spore protein%2C H-type	identified by match to protein family HMM TIGR02861	gene	gene1342	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1392
CLM_1393	CLM_1393		CLM_1393	1452714	1453469	-	conserved domain protein		gene	gene1343	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1393
CLM_1394	CLM_1394		CLM_1394	1453863	1454009	+	conserved hypothetical protein		gene	gene1344	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1394
CLM_1395	CLM_1395		CLM_1395	1454127	1454660	-	DNA-binding protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene1345	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1395
CLM_1396	CLM_1396		CLM_1396	1455083	1456132	+	putative membrane protein		gene	gene1346	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1396
CLM_1397	CLM_1397		CLM_1397	1456169	1456330	+		hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by glimmer%3B putative	pseudogene	gene1347	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1397
CLM_1398	CLM_1398		CLM_1398	1456564	1457151	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene1348	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1398
CLM_1399	CLM_1399		CLM_1399	1457166	1457393	+	conserved hypothetical protein		gene	gene1349	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1399
CLM_1400	CLM_1400		CLM_1400	1457390	1458121	+	bacitracin transport ATP-binding protein BcrA	identified by match to protein family HMM PF00005	gene	gene1350	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1400
CLM_1401	CLM_1401		CLM_1401	1458118	1458810	+	conserved hypothetical protein		gene	gene1351	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1401
CLM_1402	CLM_1402		CLM_1402	1458830	1459051	+	conserved hypothetical protein		gene	gene1352	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1402
CLM_1403	CLM_1403		CLM_1403	1459063	1459296	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1353	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1403
CLM_1404	CLM_1404		CLM_1404	1459792	1461228	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene1354	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1404
CLM_1405	CLM_1405		CLM_1405	1462397	1462705	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1355	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1405
CLM_1406	CLM_1406		CLM_1406	1463368	1463571	+	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene1356	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1406
CLM_1407	CLM_1407		CLM_1407	1463694	1463825	+	conserved hypothetical protein		gene	gene1357	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1407
CLM_1408	CLM_1408		CLM_1408	1464472	1464729	+	conserved domain protein		gene	gene1358	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1408
CLM_1409	CLM_1409		CLM_1409	1465012	1465758	+	putative lipoprotein		gene	gene1359	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1409
CLM_1410	CLM_1410		CLM_1410	1466077	1466304	+	glutaredoxin-like protein%2C YruB-family	identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR02196	gene	gene1360	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1410
CLM_1411	CLM_1411		CLM_1411	1466336	1467796	-	putative glyceraldehyde-3-phosphate dehydrogenase%2C NADP-dependent	identified by match to protein family HMM PF00171	gene	gene1361	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1411
CLM_1412	CLM_1412		CLM_1412	1467836	1468777	-	putative thioredoxin reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene1362	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1412
CLM_1414	CLM_1414	grdX	grdX	1469562	1469939	+	GrdX protein		gene	gene1363	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1414
CLM_1415	CLM_1415	grdE	grdE	1470030	1471316	+	glycine reductase%2C subunits ABC	identified by match to protein family HMM PF09338	gene	gene1364	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1415
CLM_1416	CLM_1416	grdB	grdB	1471349	1472650	+	glycine reductase%2C selenoprotein B	Selenoprotein. identified by match to protein family HMM PF07355%3B match to protein family HMM TIGR01917%3B match to protein family HMM TIGR01918	gene	gene1365	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1416
CLM_1418	CLM_1418	trxB	trxB	1472801	1473742	+	thioredoxin-disulfide reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292	gene	gene1366	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1418
CLM_1419	CLM_1419		CLM_1419	1473776	1474096	+	thioredoxin family protein	identified by match to protein family HMM PF00085	gene	gene1367	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1419
CLM_1420	CLM_1420	grdA	grdA	1474182	1474313	+	glycine reductase complex component A%2C selenocysteine-containing	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1368	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1420
CLM_1421	CLM_1421	grdA	grdA	1474329	1474658	+	glycine reductase complex component A%2C selenocysteine-containing	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF04723	gene	gene1369	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1421
CLM_1422	CLM_1422	grdC	grdC	1474753	1476291	+	glycine reductase complex component C%2C beta subunit	identified by match to protein family HMM PF08545	gene	gene1370	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1422
CLM_1423	CLM_1423	grdD	grdD	1476307	1477473	+	glycine reductase complex component C%2C alpha subunit	identified by match to protein family HMM PF02504	gene	gene1371	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1423
CLM_1424	CLM_1424		CLM_1424	1477900	1478511	+	DNA-3-methyladenine glycosylase	identified by match to protein family HMM PF02245%3B match to protein family HMM TIGR00567	gene	gene1372	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1424
CLM_1425	CLM_1425		CLM_1425	1478577	1480802	+	restriction endonuclease family protein	identified by match to protein family HMM PF07669	gene	gene1373	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1425
CLM_1426	CLM_1426	mtnK	mtnK	1481239	1482450	+	S-methyl-5-thioribose kinase	identified by match to protein family HMM TIGR01767	gene	gene1374	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1426
CLM_1427	CLM_1427	mtnA	mtnA	1482590	1483639	+	S-methyl-5-thioribose-1-phosphate isomerase	identified by match to protein family HMM PF01008%3B match to protein family HMM TIGR00512%3B match to protein family HMM TIGR00524	gene	gene1375	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1427
CLM_1428	CLM_1428		CLM_1428	1483663	1483773	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1376	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1428
CLM_1429	CLM_1429		CLM_1429	1483790	1484437	+	aldolase%2C class II%2C AraD/FucA subfamily	identified by match to protein family HMM PF00596	gene	gene1377	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1429
CLM_1430	CLM_1430		CLM_1430	1484611	1485405	+	transcriptional regulator%2C DeoR family	identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220%3B match to protein family HMM PF08279	gene	gene1378	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1430
CLM_1431	CLM_1431		CLM_1431	1485714	1486073	+	conserved hypothetical protein		gene	gene1379	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1431
CLM_1432	CLM_1432		CLM_1432	1486439	1487314	-	cation efflux family protein	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene1380	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1432
CLM_1433	CLM_1433		CLM_1433	1487562	1488290	+	conserved hypothetical protein	identified by match to protein family HMM PF04239	gene	gene1381	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1433
CLM_1434	CLM_1434		CLM_1434	1488452	1488817	+	conserved hypothetical protein		gene	gene1382	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1434
CLM_1435	CLM_1435		CLM_1435	1488945	1489283	+	conserved hypothetical protein		gene	gene1383	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1435
CLM_1436	CLM_1436		CLM_1436	1489280	1489753	+	conserved hypothetical protein		gene	gene1384	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1436
CLM_1437	CLM_1437		CLM_1437	1490288	1490680	+	conserved hypothetical protein		gene	gene1385	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1437
CLM_1438	CLM_1438		CLM_1438	1490728	1491435	+	conserved hypothetical protein		gene	gene1386	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1438
CLM_1439	CLM_1439		CLM_1439	1491506	1491682	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1387	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1439
CLM_1440	CLM_1440		CLM_1440	1492063	1492542	-	sporulation protein YtfJ	identified by match to protein family HMM PF09579	gene	gene1388	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1440
CLM_1441	CLM_1441		CLM_1441	1492567	1493112	-	membrane associated protein		gene	gene1389	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1441
CLM_1442	CLM_1442		CLM_1442	1494007	1494252	+	conserved domain protein		gene	gene1390	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1442
CLM_1443	CLM_1443		CLM_1443	1494280	1494576	+	conserved domain protein		gene	gene1391	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1443
CLM_1444	CLM_1444		CLM_1444	1494633	1496930	+	xanthine dehydrogenase family protein%2C molybdopterin-binding subunit	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene1392	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1444
CLM_1445	CLM_1445		CLM_1445	1496944	1497828	+	xanthine dehydrogenase family protein%2C FAD-binding subunit	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene1393	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1445
CLM_1446	CLM_1446		CLM_1446	1497860	1498333	+	xanthine dehydrogenase family protein%2C iron-sulfur binding subunit	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene1394	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1446
CLM_1447	CLM_1447		CLM_1447	1498449	1498922	+	guanine deaminase	identified by match to protein family HMM PF00383	gene	gene1395	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1447
CLM_1448	CLM_1448	topB	topB	1499310	1501505	+	DNA topoisomerase III	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01056	gene	gene1396	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1448
CLM_1449	CLM_1449		CLM_1449	1501978	1502583	+	putative membrane protein	identified by match to protein family HMM PF02659	gene	gene1397	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1449
CLM_1450	CLM_1450		CLM_1450	1502650	1502886	+	conserved hypothetical protein		gene	gene1398	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1450
CLM_1451	CLM_1451		CLM_1451	1502963	1503094	-	conserved hypothetical protein		gene	gene1399	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1451
CLM_1452	CLM_1452		CLM_1452	1503613	1504266	+	transaldolase	identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR00875	gene	gene1400	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1452
CLM_1453	CLM_1453		CLM_1453	1504667	1506331	+	RNA-metabolising metallo-beta-lactamase	identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521%3B match to protein family HMM TIGR00649	gene	gene1401	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1453
CLM_1454	CLM_1454		CLM_1454	1506636	1507988	+	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene1402	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1454
CLM_1455	CLM_1455		CLM_1455	1508309	1509154	+	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1403	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1455
CLM_1456	CLM_1456		CLM_1456	1509147	1510799	+	STE like transcription factor domain protein		gene	gene1404	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1456
CLM_1457	CLM_1457		CLM_1457	1510805	1512067	+	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene1405	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1457
CLM_1458	CLM_1458		CLM_1458	1512360	1514456	+	cellulose synthase domain protein		gene	gene1406	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1458
CLM_1459	CLM_1459		CLM_1459	1514872	1515966	+	conserved hypothetical protein		gene	gene1407	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1459
CLM_1460	CLM_1460		CLM_1460	1516194	1516358	+	conserved hypothetical protein		gene	gene1408	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1460
CLM_1461	CLM_1461		CLM_1461	1516693	1517496	+	putative membrane protein		gene	gene1409	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1461
CLM_1462	CLM_1462		CLM_1462	1517772	1518038	+	conserved hypothetical protein	identified by match to protein family HMM PF02583	gene	gene1410	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1462
CLM_1463	CLM_1463		CLM_1463	1518075	1520510	+	copper-exporting ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR00003%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525	gene	gene1411	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1463
CLM_1464	CLM_1464	copZ	copZ	1520633	1520848	+	copper chaperone CopZ	identified by match to protein family HMM PF00403	gene	gene1412	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1464
CLM_1465	CLM_1465		CLM_1465	1521150	1523522	+	cation-transporting ATPase%2C P-type	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene1413	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1465
CLM_1466	CLM_1466		CLM_1466	1523818	1525536	+	ABC transporter%2C ATP-binding protein/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene1414	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1466
CLM_1467	CLM_1467		CLM_1467	1525876	1526670	+	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene1415	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1467
CLM_1468	CLM_1468		CLM_1468	1526834	1527190	+	dinitrogenase iron-molybdenum cofactor family protein	identified by match to protein family HMM PF02579	gene	gene1416	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1468
CLM_1469	CLM_1469		CLM_1469	1527461	1528153	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1417	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1469
CLM_1470	CLM_1470		CLM_1470	1528150	1529397	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene1418	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1470
CLM_1471	CLM_1471		CLM_1471	1529610	1531515	+		ABC transporter%2C permease protein%3B this region contains one or more premature stops and/or frameshifts%3B identified by match to protein family HMM PF02687	pseudogene	gene1419	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1471
CLM_1473	CLM_1473		CLM_1473	1531865	1532758	+	DegV family protein	identified by match to protein family HMM PF02645%3B match to protein family HMM TIGR00762	gene	gene1420	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1473
CLM_1474	CLM_1474		CLM_1474	1532795	1533259	-	5-nitroimidazole antibiotic resistance protein	identified by match to protein family HMM PF01243	gene	gene1421	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1474
CLM_1475	CLM_1475		CLM_1475	1533378	1533497	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1422	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1475
CLM_1476	CLM_1476		CLM_1476	1533510	1533893	+	conserved hypothetical protein		gene	gene1423	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1476
CLM_1477	CLM_1477		CLM_1477	1533886	1534008	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1424	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1477
CLM_1478	CLM_1478		CLM_1478	1534093	1534248	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1425	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1478
CLM_1479	CLM_1479		CLM_1479	1534524	1534718	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1426	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1479
CLM_1480	CLM_1480		CLM_1480	1534993	1535223	+	conserved hypothetical protein		gene	gene1427	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1480
CLM_1481	CLM_1481		CLM_1481	1535331	1535897	+	conserved hypothetical protein		gene	gene1428	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1481
CLM_1482	CLM_1482		CLM_1482	1535961	1536425	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1429	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1482
CLM_1483	CLM_1483		CLM_1483	1536465	1537136	+	N-acetylmuramoyl-L-alanine amidase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01520	gene	gene1430	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1483
CLM_1484	CLM_1484		CLM_1484	1538280	1538462	+	conserved domain protein		gene	gene1431	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1484
CLM_1485	CLM_1485		CLM_1485	1538476	1538721	+	phage protein		gene	gene1432	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1485
CLM_1486	CLM_1486		CLM_1486	1538879	1539175	+	putative lipoprotein		gene	gene1433	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1486
CLM_1487	CLM_1487		CLM_1487	1539209	1539484	+	conserved hypothetical protein		gene	gene1434	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1487
CLM_1488	CLM_1488		CLM_1488	1539938	1540153	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1435	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1488
CLM_1489	CLM_1489		CLM_1489	1540191	1540619	+	HIT family protein	identified by match to protein family HMM PF01230	gene	gene1436	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1489
CLM_1490	CLM_1490		CLM_1490	1540775	1541149	-	conserved hypothetical protein		gene	gene1437	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1490
CLM_1491	CLM_1491		CLM_1491	1541441	1542199	+	type IV leader peptidase family protein	identified by match to protein family HMM PF01478%3B match to protein family HMM PF06750	gene	gene1438	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1491
CLM_1492	CLM_1492		CLM_1492	1542792	1543919	+	putative membrane protein	identified by match to protein family HMM PF07907	gene	gene1439	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1492
CLM_1493	CLM_1493	trkA	trkA	1544701	1546068	+	Trk system potassium uptake protein TrkA	identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254	gene	gene1440	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1493
CLM_1494	CLM_1494	trkH	trkH	1546065	1547510	+	Trk system potassium uptake protein TrkH	identified by match to protein family HMM PF02386	gene	gene1441	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1494
CLM_1495	CLM_1495		CLM_1495	1547917	1550484	+	helicase%2C UvrD/REP/exonuclease family protein	identified by match to protein family HMM PF00580%3B match to protein family HMM PF00929%3B match to protein family HMM TIGR00573	gene	gene1442	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1495
CLM_1496	CLM_1496		CLM_1496	1551059	1552189	-	putative membrane protein	identified by match to protein family HMM PF07853	gene	gene1443	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1496
CLM_1497	CLM_1497		CLM_1497	1552204	1552578	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392	gene	gene1444	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1497
CLM_1498	CLM_1498		CLM_1498	1553035	1553814	-	putative cell wall hydrolase	identified by match to protein family HMM PF01476%3B match to protein family HMM PF07486	gene	gene1445	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1498
CLM_1500	CLM_1500	rbr	rbr	1554590	1555177	+	rubrerythrin	identified by match to protein family HMM PF00301%3B match to protein family HMM PF02915	gene	gene1446	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1500
CLM_1501	CLM_1501		CLM_1501	1555652	1557112	+	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF04122	gene	gene1447	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1501
CLM_1502	CLM_1502	ptsG	ptsG	1557414	1559444	-	PTS system%2C glucose-specific%2C IIABC component	identified by match to protein family HMM PF00358%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00830%3B match to protein family HMM TIGR02002	gene	gene1448	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1502
CLM_1503	CLM_1503		CLM_1503	1559900	1560547	+	undecaprenyl pyrophosphate synthetase homolog	identified by match to protein family HMM PF01255	gene	gene1449	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1503
CLM_1504	CLM_1504		CLM_1504	1560933	1561382	+	conserved hypothetical protein		gene	gene1450	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1504
CLM_1505	CLM_1505		CLM_1505	1561677	1562090	+	putative transcriptional regulator	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene1451	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1505
CLM_1506	CLM_1506		CLM_1506	1562299	1564185	+	carbon monoxide dehydrogenase	identified by match to protein family HMM PF03063%3B match to protein family HMM TIGR01702	gene	gene1452	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1506
CLM_1507	CLM_1507		CLM_1507	1564332	1564775	+	nitrate reductase%2C iron-sulfur subunit	identified by match to protein family HMM PF00037	gene	gene1453	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1507
CLM_1508	CLM_1508	noxA	noxA	1564974	1566200	+	nitrate reductase%2C NADH oxidase subunit	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene1454	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1508
CLM_1509	CLM_1509		CLM_1509	1566242	1567216	-	putative transporter	identified by match to protein family HMM PF00892%3B match to protein family HMM PF03151	gene	gene1455	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1509
CLM_1510	CLM_1510		CLM_1510	1567618	1568298	+	lipid A export ATP-binding/permease protein MsbA	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1456	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1510
CLM_1511	CLM_1511		CLM_1511	1568599	1568913	+	conserved hypothetical protein		gene	gene1457	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1511
CLM_1512	CLM_1512		CLM_1512	1569085	1569771	-	transcriptional regulator%2C Crp/Fnr family	identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325	gene	gene1458	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1512
CLM_1513	CLM_1513		CLM_1513	1569888	1571087	+	major facilitator superfamily protein	identified by match to protein family HMM PF07690	gene	gene1459	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1513
CLM_1514	CLM_1514		CLM_1514	1571390	1572304	+	iron chelate uptake ABC transporter%2C FeCT family%2C solute-binding protein	identified by match to protein family HMM PF01497	gene	gene1460	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1514
CLM_1515	CLM_1515		CLM_1515	1572326	1573324	+	iron chelate uptake ABC transporter%2C FeCT family%2C permease protein	identified by match to protein family HMM PF01032	gene	gene1461	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1515
CLM_1516	CLM_1516		CLM_1516	1573327	1574088	+	iron chelate uptake ABC transporter%2C FeCT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1462	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1516
CLM_1517	CLM_1517		CLM_1517	1574309	1574644	-	conserved hypothetical protein		gene	gene1463	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1517
CLM_1518	CLM_1518		CLM_1518	1574719	1575996	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene1464	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1518
CLM_1519	CLM_1519		CLM_1519	1576416	1577261	+	transcriptional regulator%2C RpiR family	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene1465	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1519
CLM_1520	CLM_1520	murQ	murQ	1577541	1578449	+	N-acetylmuramic acid 6-phosphate etherase	identified by match to protein family HMM TIGR00274	gene	gene1466	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1520
CLM_1521	CLM_1521		CLM_1521	1578562	1579917	+	PTS system%2C IIBC components	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378	gene	gene1467	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1521
CLM_1522	CLM_1522		CLM_1522	1580108	1581184	+	conserved hypothetical protein	identified by match to protein family HMM PF05913	gene	gene1468	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1522
CLM_1523	CLM_1523		CLM_1523	1581516	1582124	+	conserved hypothetical protein	identified by match to protein family HMM PF06475	gene	gene1469	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1523
CLM_1524	CLM_1524		CLM_1524	1582407	1583048	+	conserved hypothetical protein	identified by match to protein family HMM PF06555	gene	gene1470	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1524
CLM_1525	CLM_1525		CLM_1525	1583354	1585225	+	putative membrane protein		gene	gene1471	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1525
CLM_1526	CLM_1526		CLM_1526	1585278	1586516	+	putative cell-surface protein		gene	gene1472	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1526
CLM_1527	CLM_1527		CLM_1527	1586516	1587058	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1473	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1527
CLM_1528	CLM_1528		CLM_1528	1587228	1587500	-	conserved hypothetical protein		gene	gene1474	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1528
CLM_1529	CLM_1529		CLM_1529	1587997	1589715	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF06875	gene	gene1475	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1529
CLM_1530	CLM_1530		CLM_1530	1590122	1591711	+	peptide/opine/nickel uptake ABC transporter%2C PepT family%2C substrate-binding protein	identified by match to protein family HMM PF00496	gene	gene1476	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1530
CLM_1531	CLM_1531		CLM_1531	1591708	1592664	+	peptide/opine/nickel uptake ABC transporter%2C PepT family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1477	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1531
CLM_1532	CLM_1532		CLM_1532	1592673	1593473	+	peptide/opine/nickel uptake ABC transporter%2C PepT family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1478	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1532
CLM_1533	CLM_1533		CLM_1533	1593572	1594366	+	peptide/opine/nickel uptake ABC transporter%2C PepT family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00005	gene	gene1479	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1533
CLM_1534	CLM_1534		CLM_1534	1594360	1595172	+	peptide/opine/nickel uptake ABC transporter%2C PepT family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00005	gene	gene1480	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1534
CLM_1535	CLM_1535		CLM_1535	1595639	1596151	+	putative lipoprotein		gene	gene1481	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1535
CLM_1536	CLM_1536		CLM_1536	1596444	1597232	-	manganese/zinc/iron chelate uptake ABC transporter%2C Mzt family%2C permease protein	identified by match to protein family HMM PF00950	gene	gene1482	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1536
CLM_1537	CLM_1537		CLM_1537	1597232	1597885	-	manganese/zinc/iron chelate uptake ABC transporter%2C Mzt family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1483	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1537
CLM_1538	CLM_1538		CLM_1538	1598106	1599044	+	manganese/zinc/iron chelate uptake ABC transporter%2C Mzt family%2C substrate-binding protein	identified by match to protein family HMM PF01297	gene	gene1484	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1538
CLM_1539	CLM_1539		CLM_1539	1599158	1599649	-	conserved hypothetical protein		gene	gene1485	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1539
CLM_1540	CLM_1540		CLM_1540	1600252	1602018	+	helicase domain protein	identified by match to protein family HMM PF00271	gene	gene1486	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1540
CLM_1541	CLM_1541		CLM_1541	1602153	1602701	+	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1487	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1541
CLM_1542	CLM_1542		CLM_1542	1603614	1604621	+	putative lipoprotein		gene	gene1488	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1542
CLM_1543	CLM_1543		CLM_1543	1604593	1605354	+	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1489	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1543
CLM_1544	CLM_1544		CLM_1544	1605494	1606093	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1490	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1544
CLM_1545	CLM_1545		CLM_1545	1606372	1606845	+	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene1491	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1545
CLM_1546	CLM_1546		CLM_1546	1606815	1607288	+	conserved hypothetical protein	identified by match to protein family HMM PF02001	gene	gene1492	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1546
CLM_1547	CLM_1547		CLM_1547	1607415	1608686	+	zinc carboxypeptidase family protein	identified by match to protein family HMM PF00246%3B match to protein family HMM PF01471%3B match to protein family HMM PF01476	gene	gene1493	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1547
CLM_1548	CLM_1548		CLM_1548	1608731	1608847	+	conserved hypothetical protein		gene	gene1494	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1548
CLM_1549	CLM_1549	rnz	rnz	1608979	1610016	+	ribonuclease Z	identified by match to protein family HMM PF00753%3B match to protein family HMM TIGR02651	gene	gene1495	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1549
CLM_1550	CLM_1550		CLM_1550	1610362	1611681	+	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene1496	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1550
CLM_1551	CLM_1551		CLM_1551	1611826	1612203	+	conserved hypothetical protein	identified by match to protein family HMM PF08000	gene	gene1497	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1551
CLM_1552	CLM_1552		CLM_1552	1612375	1613532	+	sensor histidine kinase	identified by match to protein family HMM PF02518%3B match to protein family HMM PF07730	gene	gene1498	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1552
CLM_1553	CLM_1553		CLM_1553	1613766	1614419	+	DNA-binding response regulator%2C LuxR family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene1499	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1553
CLM_1554	CLM_1554		CLM_1554	1614822	1615760	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1500	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1554
CLM_1555	CLM_1555		CLM_1555	1615866	1617044	+	putative ABC transporter%2C permease protein		gene	gene1501	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1555
CLM_1556	CLM_1556		CLM_1556	1617046	1618146	+	putative membrane protein	identified by match to protein family HMM PF01061	gene	gene1502	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1556
CLM_1557	CLM_1557		CLM_1557	1618150	1618395	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1503	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1557
CLM_1559	CLM_1559		CLM_1559	1618762	1619313	-	nitroreductase family protein	identified by match to protein family HMM PF00881	gene	gene1504	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1559
CLM_1560	CLM_1560		CLM_1560	1619871	1620362	-	conserved hypothetical protein		gene	gene1505	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1560
CLM_1561	CLM_1561		CLM_1561	1620530	1620733	-	major cold shock protein	identified by match to protein family HMM PF00313	gene	gene1506	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1561
CLM_1562	CLM_1562	pepD	pepD	1621000	1622463	+	aminoacyl-histidine dipeptidase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01893	gene	gene1507	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1562
CLM_1563	CLM_1563		CLM_1563	1622521	1623414	+	TPR domain protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene1508	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1563
CLM_1564	CLM_1564	pdxK	pdxK	1623680	1624516	+	pyridoxal kinase	identified by match to protein family HMM PF08543	gene	gene1509	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1564
CLM_1565	CLM_1565		CLM_1565	1624805	1625443	-	putative methionine-S-sulfoxide reductase	identified by match to protein family HMM PF01625	gene	gene1510	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1565
CLM_1566	CLM_1566		CLM_1566	1626259	1627023	+	peptide ABC transporter%2C Pep4E family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1511	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1566
CLM_1567	CLM_1567		CLM_1567	1627010	1628899	+	peptide ABC transporter%2C Pep4E family%2C permease protein	identified by match to protein family HMM PF02687	gene	gene1512	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1567
CLM_1568	CLM_1568		CLM_1568	1629076	1629573	+	conserved hypothetical protein		gene	gene1513	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1568
CLM_1569	CLM_1569		CLM_1569	1630016	1630717	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1514	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1569
CLM_1570	CLM_1570		CLM_1570	1630719	1631696	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene1515	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1570
CLM_1571	CLM_1571		CLM_1571	1631770	1632525	+	peptide ABC transporter%2C Pep4E family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1516	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1571
CLM_1572	CLM_1572		CLM_1572	1632515	1634323	+	peptide ABC transporter%2C Pep4E family%2C permease protein		gene	gene1517	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1572
CLM_1573	CLM_1573		CLM_1573	1634392	1635114	+	conserved hypothetical protein		gene	gene1518	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1573
CLM_1575	CLM_1575		CLM_1575	1635461	1636494	+		conserved hypothetical protein%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:ABV34497.1	pseudogene	gene1519	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1575
CLM_1576	CLM_1576		CLM_1576	1636878	1638056	+	aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155	gene	gene1520	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1576
CLM_1577	CLM_1577		CLM_1577	1638253	1639071	+	amino acid ABC transporter%2C amino acid-binding protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00497	gene	gene1521	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1577
CLM_1578	CLM_1578		CLM_1578	1639084	1639749	+	amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene1522	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1578
CLM_1579	CLM_1579		CLM_1579	1639768	1640505	+	polar amino acid uptake family ABC transporter%2C PAAT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1523	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1579
CLM_1580	CLM_1580		CLM_1580	1640931	1641149	+	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene1524	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1580
CLM_1581	CLM_1581		CLM_1581	1641348	1642622	-	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF00768	gene	gene1525	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1581
CLM_1582	CLM_1582		CLM_1582	1642921	1643544	+	pyrophosphatase%2C MutT/nudix family	identified by match to protein family HMM PF00293	gene	gene1526	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1582
CLM_1583	CLM_1583		CLM_1583	1643595	1643942	-	conserved hypothetical protein		gene	gene1527	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1583
CLM_1584	CLM_1584		CLM_1584	1644288	1645451	+	NADH-dependent butanol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene1528	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1584
CLM_1585	CLM_1585		CLM_1585	1645835	1646059	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1529	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1585
CLM_1586	CLM_1586		CLM_1586	1646232	1647752	+	C4-dicarboxylate transporter	identified by match to protein family HMM PF03600%3B match to protein family HMM PF03606%3B match to protein family HMM PF06808	gene	gene1530	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1586
CLM_1587	CLM_1587		CLM_1587	1647891	1649372	-	putative nicotinate phosphoribosyltransferase	identified by match to protein family HMM PF04095%3B match to protein family HMM TIGR01513	gene	gene1531	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1587
CLM_1588	CLM_1588		CLM_1588	1649828	1650634	+	polar amino acid uptake ABC transporter%2C PAAT family%2C amino acid-binding protein	identified by match to protein family HMM PF00497	gene	gene1532	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1588
CLM_1589	CLM_1589		CLM_1589	1650636	1651295	+	amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene1533	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1589
CLM_1590	CLM_1590		CLM_1590	1651426	1651974	+	conserved hypothetical protein		gene	gene1534	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1590
CLM_1591	CLM_1591		CLM_1591	1652069	1654081	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1535	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1591
CLM_1592	CLM_1592		CLM_1592	1654432	1654734	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1536	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1592
CLM_1593	CLM_1593		CLM_1593	1654937	1657165	+	putative cell division protein FtsA	identified by match to protein family HMM PF02491	gene	gene1537	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1593
CLM_1594	CLM_1594		CLM_1594	1657253	1658431	+	amidohydrolase family protein	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891	gene	gene1538	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1594
CLM_1595	CLM_1595		CLM_1595	1658487	1659338	+	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520	gene	gene1539	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1595
CLM_1596	CLM_1596		CLM_1596	1659999	1660952	+	pseudouridine synthase%2C RluA family	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005	gene	gene1540	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1596
CLM_1597	CLM_1597	spoVB	spoVB	1660984	1662591	+	stage V sporulation protein B	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943%3B match to protein family HMM PF03023	gene	gene1541	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1597
CLM_1598	CLM_1598	spoVB	spoVB	1662628	1664133	-	stage V sporulation protein B	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943%3B match to protein family HMM TIGR02900	gene	gene1542	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1598
CLM_1599	CLM_1599		CLM_1599	1664465	1665028	+	conserved hypothetical protein		gene	gene1543	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1599
CLM_1600	CLM_1600		CLM_1600	1665049	1665456	-	conserved hypothetical protein		gene	gene1544	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1600
CLM_1601	CLM_1601		CLM_1601	1666555	1667754	+	alcohol dehydrogenase%2C iron-containing	identified by match to protein family HMM PF00465	gene	gene1545	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1601
CLM_1602	CLM_1602		CLM_1602	1668115	1670433	+	ATP-dependent protease	identified by match to protein family HMM PF05362	gene	gene1546	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1602
CLM_1604	CLM_1604		CLM_1604	1670644	1671608	-		thermolysin metallopeptidase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by match to protein family HMM PF03413	pseudogene	gene1547	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1604
CLM_1605	CLM_1605	npr	npr	1671777	1673495	-	thermolysin metallopeptidase	identified by match to protein family HMM PF01447%3B match to protein family HMM PF02868%3B match to protein family HMM PF03413	gene	gene1548	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1605
CLM_1606	CLM_1606	npr	npr	1673632	1675410	-	thermolysin metallopeptidase	identified by match to protein family HMM PF01447%3B match to protein family HMM PF02868%3B match to protein family HMM PF03413	gene	gene1549	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1606
CLM_1607	CLM_1607	npr	npr	1675527	1677311	-	thermolysin metallopeptidase	identified by match to protein family HMM PF01447%3B match to protein family HMM PF02868%3B match to protein family HMM PF03413	gene	gene1550	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1607
CLM_1608	CLM_1608	npr	npr	1677431	1679176	-	thermolysin metallopeptidase	identified by match to protein family HMM PF01447%3B match to protein family HMM PF02868%3B match to protein family HMM PF03413	gene	gene1551	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1608
CLM_1609	CLM_1609		CLM_1609	1679297	1681036	-	bacillolysin	identified by match to protein family HMM PF01447%3B match to protein family HMM PF02868	gene	gene1552	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1609
CLM_1610	CLM_1610	nadC	nadC	1681639	1682475	-	nicotinate-nucleotide diphosphorylase (carboxylating)	identified by match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078	gene	gene1553	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1610
CLM_1611	CLM_1611	nadB	nadB	1682456	1683757	-	L-aspartate oxidase	identified by match to protein family HMM PF00890%3B match to protein family HMM PF07992	gene	gene1554	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1611
CLM_1612	CLM_1612	nadA	nadA	1683760	1684674	-	quinolinate synthetase complex%2C A subunit	identified by match to protein family HMM PF02445%3B match to protein family HMM TIGR00550	gene	gene1555	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1612
CLM_1613	CLM_1613		CLM_1613	1685046	1685546	+	conserved hypothetical protein		gene	gene1556	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1613
CLM_1614	CLM_1614		CLM_1614	1685563	1686612	-	phage integrase	identified by match to protein family HMM PF00589	gene	gene1557	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1614
CLM_1615	CLM_1615		CLM_1615	1686599	1686820	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene1558	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1615
CLM_1616	CLM_1616		CLM_1616	1687007	1687369	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene1560	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1616
CLM_1617	CLM_1617		CLM_1617	1686908	1687036	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1559	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1617
CLM_1618	CLM_1618		CLM_1618	1687815	1688015	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene1561	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1618
CLM_1619	CLM_1619		CLM_1619	1688016	1688717	+	phage regulatory protein%2C Rha family	identified by match to protein family HMM PF09669	gene	gene1562	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1619
CLM_1620	CLM_1620		CLM_1620	1688718	1688879	+	conserved domain protein		gene	gene1563	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1620
CLM_1621	CLM_1621		CLM_1621	1688892	1689032	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1564	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1621
CLM_1622	CLM_1622		CLM_1622	1689035	1689229	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1565	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1622
CLM_1623	CLM_1623		CLM_1623	1689245	1689442	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1566	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1623
CLM_1624	CLM_1624		CLM_1624	1689456	1689599	+	phage protein		gene	gene1567	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1624
CLM_1625	CLM_1625		CLM_1625	1689592	1689759	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1568	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1625
CLM_1626	CLM_1626		CLM_1626	1689762	1690019	+	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1569	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1626
CLM_1627	CLM_1627		CLM_1627	1690068	1690229	+	conserved domain protein		gene	gene1570	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1627
CLM_1628	CLM_1628		CLM_1628	1690207	1690518	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1571	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1628
CLM_1629	CLM_1629		CLM_1629	1690518	1690739	+	conserved domain protein		gene	gene1572	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1629
CLM_1631	CLM_1631		CLM_1631	1690872	1691369	+	phage protein	identified by match to protein family HMM PF07211	gene	gene1573	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1631
CLM_1632	CLM_1632		CLM_1632	1691369	1691998	+	essential recombination function protein	identified by match to protein family HMM PF04404	gene	gene1574	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1632
CLM_1633	CLM_1633		CLM_1633	1692000	1692284	+	conserved domain protein		gene	gene1575	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1633
CLM_1634	CLM_1634		CLM_1634	1692295	1693182	+	putative phage replisome organizer	identified by match to protein family HMM PF09681%3B match to protein family HMM TIGR01714	gene	gene1576	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1634
CLM_1635	CLM_1635		CLM_1635	1693523	1693882	+	conserved hypothetical protein		gene	gene1577	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1635
CLM_1636	CLM_1636		CLM_1636	1693895	1694449	+	conserved hypothetical protein		gene	gene1578	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1636
CLM_1637	CLM_1637		CLM_1637	1694452	1694640	+	conserved domain protein		gene	gene1579	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1637
CLM_1638	CLM_1638		CLM_1638	1694652	1694930	+	conserved hypothetical protein		gene	gene1580	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1638
CLM_1639	CLM_1639		CLM_1639	1694978	1695697	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1581	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1639
CLM_1640	CLM_1640		CLM_1640	1695741	1695917	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1582	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1640
CLM_1641	CLM_1641		CLM_1641	1695932	1696120	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1583	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1641
CLM_1642	CLM_1642		CLM_1642	1696181	1696294	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1584	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1642
CLM_1643	CLM_1643		CLM_1643	1696366	1696551	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1585	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1643
CLM_1644	CLM_1644		CLM_1644	1696590	1696784	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1586	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1644
CLM_1645	CLM_1645		CLM_1645	1696913	1697962	+	conserved hypothetical protein		gene	gene1587	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1645
CLM_1646	CLM_1646		CLM_1646	1698069	1698782	+	conserved hypothetical protein		gene	gene1588	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1646
CLM_1647	CLM_1647		CLM_1647	1698779	1698964	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1589	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1647
CLM_1648	CLM_1648		CLM_1648	1698951	1699100	+	conserved hypothetical protein		gene	gene1590	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1648
CLM_1649	CLM_1649		CLM_1649	1699112	1699282	+	conserved hypothetical protein		gene	gene1591	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1649
CLM_1650	CLM_1650		CLM_1650	1699272	1699658	+	conserved hypothetical protein		gene	gene1592	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1650
CLM_1651	CLM_1651		CLM_1651	1699918	1700130	+	conserved domain protein		gene	gene1593	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1651
CLM_1652	CLM_1652		CLM_1652	1700131	1700736	+	phage integrase family protein	identified by match to protein family HMM PF00589	gene	gene1594	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1652
CLM_1653	CLM_1653		CLM_1653	1701034	1701531	+	conserved hypothetical protein		gene	gene1595	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1653
CLM_1654	CLM_1654		CLM_1654	1701586	1701948	+	HNH endonuclease domain protein	identified by match to protein family HMM PF01844	gene	gene1596	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1654
CLM_1655	CLM_1655		CLM_1655	1702109	1702591	+	phage terminase%2C small subunit%2C P27 family	identified by match to protein family HMM PF05119%3B match to protein family HMM TIGR01558	gene	gene1597	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1655
CLM_1656	CLM_1656		CLM_1656	1702591	1704333	+	putative phage terminase%2C large subunit	identified by match to protein family HMM PF03354	gene	gene1598	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1656
CLM_1657	CLM_1657		CLM_1657	1704345	1705601	+	phage portal protein%2C HK97 family	identified by match to protein family HMM PF04860%3B match to protein family HMM TIGR01537	gene	gene1599	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1657
CLM_1658	CLM_1658		CLM_1658	1705588	1706349	+	serine protease	identified by match to protein family HMM PF00574	gene	gene1600	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1658
CLM_1659	CLM_1659		CLM_1659	1706388	1707563	+	phage major capsid protein%2C HK97 family	identified by match to protein family HMM PF05065%3B match to protein family HMM TIGR01554	gene	gene1601	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1659
CLM_1660	CLM_1660		CLM_1660	1707608	1707865	+	conserved hypothetical protein	identified by match to protein family HMM PF05135%3B match to protein family HMM TIGR01560	gene	gene1602	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1660
CLM_1661	CLM_1661		CLM_1661	1707884	1708219	+	conserved hypothetical protein	identified by similarity to GB:ABR48571.1	gene	gene1603	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1661
CLM_1662	CLM_1662		CLM_1662	1708229	1708438	+	conserved hypothetical protein		gene	gene1604	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1662
CLM_1663	CLM_1663		CLM_1663	1708441	1708854	+	conserved hypothetical protein		gene	gene1605	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1663
CLM_1664	CLM_1664		CLM_1664	1708915	1709340	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1606	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1664
CLM_1665	CLM_1665		CLM_1665	1709543	1709833	+	conserved hypothetical protein		gene	gene1607	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1665
CLM_1666	CLM_1666		CLM_1666	1709838	1710923	+	conserved hypothetical protein		gene	gene1608	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1666
CLM_1667	CLM_1667		CLM_1667	1710934	1711362	+	conserved hypothetical protein	identified by match to protein family HMM PF09393	gene	gene1609	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1667
CLM_1668	CLM_1668		CLM_1668	1711378	1711797	+	conserved hypothetical protein		gene	gene1610	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1668
CLM_1669	CLM_1669		CLM_1669	1711866	1711997	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1611	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1669
CLM_1670	CLM_1670		CLM_1670	1712033	1714663	+	phage tail tape measure protein%2C TP901 family%2C core region	identified by match to protein family HMM TIGR01760	gene	gene1612	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1670
CLM_1671	CLM_1671		CLM_1671	1714710	1715141	+	conserved domain protein	identified by similarity to GB:ABR48580.1	gene	gene1613	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1671
CLM_1672	CLM_1672		CLM_1672	1715141	1716073	+	conserved hypothetical protein		gene	gene1614	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1672
CLM_1673	CLM_1673		CLM_1673	1716084	1716401	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1615	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1673
CLM_1674	CLM_1674		CLM_1674	1716413	1716850	+	conserved hypothetical protein		gene	gene1616	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1674
CLM_1675	CLM_1675		CLM_1675	1716862	1717971	+	conserved hypothetical protein	identified by match to protein family HMM PF04865	gene	gene1617	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1675
CLM_1676	CLM_1676		CLM_1676	1717983	1718513	+	conserved hypothetical protein		gene	gene1618	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1676
CLM_1677	CLM_1677		CLM_1677	1718524	1719330	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1619	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1677
CLM_1678	CLM_1678		CLM_1678	1719346	1719651	+	conserved hypothetical protein		gene	gene1620	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1678
CLM_1679	CLM_1679		CLM_1679	1719667	1719852	+	conserved hypothetical protein		gene	gene1621	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1679
CLM_1680	CLM_1680		CLM_1680	1719940	1720143	+	bacteriocin UviB	identified by similarity to SP:P15936	gene	gene1622	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1680
CLM_1681	CLM_1681		CLM_1681	1720145	1720318	+	conserved hypothetical protein		gene	gene1623	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1681
CLM_1682	CLM_1682		CLM_1682	1720361	1721119	+	bacteriophage endolysin	identified by match to protein family HMM PF01520	gene	gene1624	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1682
CLM_1683	CLM_1683		CLM_1683	1721443	1721595	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1625	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1683
CLM_1684	CLM_1684		CLM_1684	1721582	1721764	+	conserved hypothetical protein		gene	gene1626	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1684
CLM_1685	CLM_1685		CLM_1685	1721775	1722020	+	putative lipoprotein		gene	gene1627	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1685
CLM_1686	CLM_1686		CLM_1686	1722165	1722671	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1628	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1686
CLM_1687	CLM_1687		CLM_1687	1722828	1723316	+	conserved hypothetical protein		gene	gene1629	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1687
CLM_1688	CLM_1688	hlyIII	hlyIII	1723413	1724051	-	hemolysin III	identified by match to protein family HMM PF03006%3B match to protein family HMM TIGR01065	gene	gene1630	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1688
CLM_1689	CLM_1689	ychF	ychF	1724172	1725269	-	GTP-binding protein YchF	identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092	gene	gene1631	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1689
CLM_1690	CLM_1690	mraZ	mraZ	1725963	1726433	+	mraZ protein	identified by match to protein family HMM PF02381%3B match to protein family HMM TIGR00242	gene	gene1632	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1690
CLM_1691	CLM_1691	mraW	mraW	1726513	1727442	+	S-adenosyl-methyltransferase MraW	identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006	gene	gene1633	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1691
CLM_1692	CLM_1692		CLM_1692	1727524	1728027	+	putative cell division protein FtsL		gene	gene1634	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1692
CLM_1693	CLM_1693		CLM_1693	1728043	1730223	+	stage V sporulation protein D	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM PF03793%3B match to protein family HMM TIGR02214	gene	gene1635	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1693
CLM_1694	CLM_1694	murE	murE	1730453	1731904	+	UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01085	gene	gene1636	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1694
CLM_1695	CLM_1695	murF	murF	1731930	1733318	+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01143	gene	gene1637	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1695
CLM_1696	CLM_1696	mraY	mraY	1733354	1734307	+	phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR00445	gene	gene1638	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1696
CLM_1697	CLM_1697		CLM_1697	1734386	1735498	+	cell cycle protein%2C FtsW/RodA/SpoVE family	identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02614%3B match to protein family HMM TIGR02615	gene	gene1639	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1697
CLM_1698	CLM_1698		CLM_1698	1735821	1736591	+	cell division protein FtsQ	identified by match to protein family HMM PF08478	gene	gene1640	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1698
CLM_1699	CLM_1699		CLM_1699	1736602	1737315	+	conserved hypothetical protein	identified by match to protein family HMM PF05949	gene	gene1641	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1699
CLM_1700	CLM_1700	sbp	sbp	1737350	1737700	+	small basic protein	identified by match to protein family HMM PF06947	gene	gene1642	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1700
CLM_1701	CLM_1701		CLM_1701	1737701	1738432	+	conserved hypothetical protein	identified by match to protein family HMM PF05949	gene	gene1643	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1701
CLM_1702	CLM_1702		CLM_1702	1738525	1739196	+	conserved hypothetical protein TIGR00044	identified by match to protein family HMM PF01168%3B match to protein family HMM TIGR00044	gene	gene1644	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1702
CLM_1703	CLM_1703		CLM_1703	1739217	1739669	+	conserved hypothetical protein	identified by match to protein family HMM PF04472	gene	gene1645	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1703
CLM_1704	CLM_1704		CLM_1704	1739686	1739961	+	YGGT family protein	identified by match to protein family HMM PF02325	gene	gene1646	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1704
CLM_1705	CLM_1705		CLM_1705	1739962	1740732	+	conserved hypothetical protein		gene	gene1647	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1705
CLM_1706	CLM_1706	divIVA	divIVA	1740748	1741407	+	cell-division initiation protein DivIVA	identified by match to protein family HMM PF05103%3B match to protein family HMM TIGR03544	gene	gene1648	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1706
CLM_1707	CLM_1707	aroB	aroB	1741815	1742903	+	3-dehydroquinate synthase	identified by match to protein family HMM PF01761%3B match to protein family HMM TIGR01357	gene	gene1649	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1707
CLM_1708	CLM_1708	mtnN	mtnN	1742904	1743596	+	MTA/SAH nucleosidase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704	gene	gene1650	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1708
CLM_1709	CLM_1709	aroF	aroF	1743717	1744517	+	3-deoxy-7-phosphoheptulonate synthase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01361	gene	gene1651	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1709
CLM_1710	CLM_1710	aroA	aroA	1744684	1746012	+	3-phosphoshikimate 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01356	gene	gene1652	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1710
CLM_1711	CLM_1711		CLM_1711	1746229	1746852	+	putative RNA polymerase-binding protein DksA	identified by match to protein family HMM PF01258%3B match to protein family HMM TIGR02890	gene	gene1653	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1711
CLM_1712	CLM_1712	lspA	lspA	1747076	1747519	+	signal peptidase II	identified by match to protein family HMM PF01252%3B match to protein family HMM TIGR00077	gene	gene1654	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1712
CLM_1713	CLM_1713		CLM_1713	1747523	1748440	+	pseudouridine synthase%2C RluA family	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005	gene	gene1655	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1713
CLM_1715	CLM_1715	pyrR	pyrR	1748936	1749472	+	pyrimidine operon regulatory protein/uracil phosphoribosyltransferase	identified by match to protein family HMM PF00156	gene	gene1656	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1715
CLM_1716	CLM_1716	uraA	uraA	1749516	1750859	+	uracil permease	identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801	gene	gene1657	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1716
CLM_1717	CLM_1717		CLM_1717	1750927	1751052	-	putative small multi-drug export protein		gene	gene1658	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1717
CLM_1718	CLM_1718	xth	xth	1751161	1751922	+	exodeoxyribonuclease III	identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633	gene	gene1659	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1718
CLM_1719	CLM_1719		CLM_1719	1752146	1753288	+	putative methyltransferase	identified by match to protein family HMM PF01170	gene	gene1660	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1719
CLM_1720	CLM_1720		CLM_1720	1753518	1754063	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1661	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1720
CLM_1721	CLM_1721	modA	modA	1754241	1755056	+	molybdate ABC transporter%2C periplasmic molybdate-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256	gene	gene1662	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1721
CLM_1722	CLM_1722	modB	modB	1755066	1755737	+	molybdate ABC transporter%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02141	gene	gene1663	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1722
CLM_1723	CLM_1723		CLM_1723	1756064	1756735	+	putative molybdate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1664	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1723
CLM_1724	CLM_1724		CLM_1724	1756789	1757358	+	conserved hypothetical protein		gene	gene1665	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1724
CLM_1725	CLM_1725		CLM_1725	1757706	1758629	+	patatin-like phospholipase family protein	identified by match to protein family HMM PF01734	gene	gene1666	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1725
CLM_1726	CLM_1726		CLM_1726	1758929	1759084	+	conserved hypothetical protein		gene	gene1667	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1726
CLM_1727	CLM_1727		CLM_1727	1759357	1760409	+	uroporphyrinogen decarboxylase family protein	identified by match to protein family HMM PF01208	gene	gene1668	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1727
CLM_1728	CLM_1728		CLM_1728	1760497	1761894	+	Na+/H+ antiporter family protein	identified by match to protein family HMM PF03553	gene	gene1669	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1728
CLM_1729	CLM_1729		CLM_1729	1762036	1763766	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00111	gene	gene1670	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1729
CLM_1730	CLM_1730		CLM_1730	1763856	1764785	+	CobW/P47K family protein	identified by match to protein family HMM PF02492	gene	gene1671	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1730
CLM_1731	CLM_1731		CLM_1731	1764808	1765680	+	uroporphyrinogen decarboxylase family protein		gene	gene1672	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1731
CLM_1732	CLM_1732	mtbC	mtbC	1765706	1766368	+	dimethylamine corrinoid protein	identified by match to protein family HMM PF02310%3B match to protein family HMM PF02607%3B match to protein family HMM TIGR02370	gene	gene1673	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1732
CLM_1733	CLM_1733		CLM_1733	1766453	1767475	+	methyltransferase%2C MtaA/CmuA family	identified by match to protein family HMM PF01208%3B match to protein family HMM TIGR01463	gene	gene1674	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1733
CLM_1734	CLM_1734		CLM_1734	1768422	1769492	+	uroporphyrinogen decarboxylase family protein	identified by match to protein family HMM PF01208	gene	gene1675	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1734
CLM_1735	CLM_1735		CLM_1735	1769515	1770477	+	methionine ABC transporter%2C MUT family%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF09383	gene	gene1676	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1735
CLM_1736	CLM_1736		CLM_1736	1770479	1771135	+	methionine ABC transporter%2C MUT family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1677	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1736
CLM_1737	CLM_1737		CLM_1737	1771279	1772097	+	lipoprotein%2C NLPA family	identified by match to protein family HMM PF03180	gene	gene1678	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1737
CLM_1738	CLM_1738		CLM_1738	1772188	1772757	-	MORN repeat protein	identified by match to protein family HMM PF02493	gene	gene1679	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1738
CLM_1739	CLM_1739		CLM_1739	1773331	1774350	+	oxidoreductase%2C FAD/FMN-binding	identified by match to protein family HMM PF00724	gene	gene1680	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1739
CLM_1740	CLM_1740	asnA	asnA	1774679	1775701	+	aspartate--ammonia ligase	identified by match to protein family HMM PF03590%3B match to protein family HMM TIGR00669	gene	gene1681	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1740
CLM_1741	CLM_1741		CLM_1741	1775810	1777375	-	oxidoreductase%2C FAD dependent	identified by match to protein family HMM PF00355%3B match to protein family HMM PF01266	gene	gene1682	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1741
CLM_1742	CLM_1742		CLM_1742	1777728	1779587	+	DNA topoisomerase	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751	gene	gene1683	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1742
CLM_1743	CLM_1743		CLM_1743	1779614	1781527	+	mutS domain protein	identified by match to protein family HMM PF00488	gene	gene1684	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1743
CLM_1744	CLM_1744		CLM_1744	1781844	1782980	+	oxidoreductase%2C aldo/keto reductase family	identified by match to protein family HMM PF00037%3B match to protein family HMM PF00248	gene	gene1685	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1744
CLM_1745	CLM_1745		CLM_1745	1783038	1783529	-	conserved hypothetical protein	identified by match to protein family HMM PF04073	gene	gene1686	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1745
CLM_1746	CLM_1746		CLM_1746	1783766	1784464	+	peptide ABC transporter%2C Pep4E family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1687	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1746
CLM_1747	CLM_1747		CLM_1747	1784465	1786675	+	efflux ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene1688	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1747
CLM_1748	CLM_1748		CLM_1748	1786687	1787310	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene1689	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1748
CLM_1749	CLM_1749		CLM_1749	1787672	1788223	+	conserved hypothetical protein		gene	gene1690	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1749
CLM_1750	CLM_1750		CLM_1750	1788236	1789333	+	carbohydrate uptake ABC transporter%2C CUT1 family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1691	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1750
CLM_1751	CLM_1751		CLM_1751	1789326	1790219	+	carbohydrate uptake ABC transporter%2C CUT1 family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1692	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1751
CLM_1752	CLM_1752		CLM_1752	1790255	1791079	+	carbohydrate uptake ABC transporter%2C CUT1 family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1693	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1752
CLM_1753	CLM_1753		CLM_1753	1791125	1792486	+	carbohydrate uptake ABC transporter%2C CUT1 family%2C carbohydrate-binding protein	identified by match to protein family HMM PF01547	gene	gene1694	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1753
CLM_1754	CLM_1754	ldh	ldh	1792710	1793666	-	L-lactate dehydrogenase	identified by match to protein family HMM PF00056%3B match to protein family HMM PF02866%3B match to protein family HMM TIGR01771	gene	gene1695	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1754
CLM_1755	CLM_1755		CLM_1755	1794188	1794898	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene1696	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1755
CLM_1756	CLM_1756		CLM_1756	1795344	1795832	-	redox family protein	identified by match to protein family HMM PF09719%3B match to protein family HMM TIGR01909	gene	gene1697	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1756
CLM_1757	CLM_1757		CLM_1757	1796066	1797013	+	C4-dicarboxylate transporter/malic acid transport protein	identified by match to protein family HMM PF03595	gene	gene1698	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1757
CLM_1758	CLM_1758		CLM_1758	1797085	1797162	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1699	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1758
CLM_1759	CLM_1759		CLM_1759	1797876	1800074	+	putative sensory box-containing diguanylate cyclase	identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1700	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1759
CLM_1760	CLM_1760		CLM_1760	1800182	1800529	+	conserved hypothetical protein	identified by match to protein family HMM PF03860	gene	gene1701	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1760
CLM_1761	CLM_1761		CLM_1761	1800897	1802969	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene1702	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1761
CLM_1762	CLM_1762		CLM_1762	1803175	1803654	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1703	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1762
CLM_1763	CLM_1763		CLM_1763	1803668	1804210	+	conserved hypothetical protein		gene	gene1704	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1763
CLM_1764	CLM_1764		CLM_1764	1804359	1804712	-	putative transcriptional regulator	identified by match to protein family HMM PF01638	gene	gene1705	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1764
CLM_1765	CLM_1765		CLM_1765	1805107	1805472	+	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene1706	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1765
CLM_1766	CLM_1766	ogt	ogt	1805501	1805971	+	methylated-DNA-(protein)-cysteine S-methyltransferase	identified by match to protein family HMM PF01035%3B match to protein family HMM TIGR00589	gene	gene1707	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1766
CLM_1767	CLM_1767		CLM_1767	1805998	1807215	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF09370	gene	gene1708	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1767
CLM_1768	CLM_1768		CLM_1768	1807380	1808588	+	conserved hypothetical protein	identified by match to protein family HMM PF06792	gene	gene1709	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1768
CLM_1769	CLM_1769		CLM_1769	1808613	1809443	+	conserved hypothetical protein	identified by match to protein family HMM PF09370	gene	gene1710	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1769
CLM_1770	CLM_1770		CLM_1770	1809833	1810945	+	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene1711	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1770
CLM_1771	CLM_1771		CLM_1771	1810973	1811140	-	conserved hypothetical protein		gene	gene1712	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1771
CLM_1772	CLM_1772		CLM_1772	1811253	1811627	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1713	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1772
CLM_1773	CLM_1773		CLM_1773	1811684	1812553	+	cation efflux family protein	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene1714	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1773
CLM_1774	CLM_1774		CLM_1774	1813039	1814442	+	amino acid/peptide transporter	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene1715	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1774
CLM_1775	CLM_1775		CLM_1775	1814880	1815239	+	putative iron-dependent repressor	identified by match to protein family HMM PF01325%3B match to protein family HMM PF02742	gene	gene1716	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1775
CLM_1776	CLM_1776		CLM_1776	1815337	1815744	+	conserved domain protein		gene	gene1717	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1776
CLM_1777	CLM_1777		CLM_1777	1816125	1816979	+	HDIG domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM PF08668%3B match to protein family HMM TIGR00277	gene	gene1718	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1777
CLM_1779	CLM_1779		CLM_1779	1817096	1817257	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1719	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1779
CLM_1780	CLM_1780		CLM_1780	1817434	1820070	-	cation-transporting ATPase%2C P-type	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene1720	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1780
CLM_1782	CLM_1782		CLM_1782	1820905	1821267	+	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene1721	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1782
CLM_1784	CLM_1784		CLM_1784	1821453	1821893	-		conserved hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:AAP10386.1	pseudogene	gene1722	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1784
CLM_1785	CLM_1785		CLM_1785	1821907	1822332	-	conserved hypothetical protein		gene	gene1723	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1785
CLM_1787	CLM_1787		CLM_1787	1822448	1823142	+		cyclic nucleotide-binding domain protein%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene1724	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1787
CLM_1788	CLM_1788		CLM_1788	1823262	1823429	+	transcriptional regulator%2C LuxR family	identified by match to protein family HMM PF00196	gene	gene1725	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1788
CLM_1790	CLM_1790		CLM_1790	1823509	1824231	-	transcription activator%2C effector binding domain protein	identified by match to protein family HMM PF06445	gene	gene1726	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1790
CLM_1791	CLM_1791		CLM_1791	1824289	1825233	-	conserved hypothetical protein	identified by match to protein family HMM PF08220%3B match to protein family HMM PF08279	gene	gene1727	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1791
CLM_1793	CLM_1793		CLM_1793	1825848	1826843	+	2-hydroxyglutaryl-CoA dehydratase%2C D-component	identified by match to protein family HMM PF06050	gene	gene1728	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1793
CLM_1794	CLM_1794	hgdC	hgdC	1826960	1827721	+	2-hydroxyglutaryl-CoA dehydratase component A	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene1729	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1794
CLM_1795	CLM_1795	queD	queD	1827739	1828170	+	queuosine biosynthesis protein QueD	identified by match to protein family HMM PF01242%3B match to protein family HMM TIGR03367	gene	gene1730	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1795
CLM_1796	CLM_1796		CLM_1796	1828172	1828837	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene1731	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1796
CLM_1797	CLM_1797	folE	folE	1828841	1829431	+	GTP cyclohydrolase I	identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR00063	gene	gene1732	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1797
CLM_1798	CLM_1798		CLM_1798	1829615	1830274	+	ExsB protein	identified by match to protein family HMM PF06508%3B match to protein family HMM TIGR00364	gene	gene1733	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1798
CLM_1799	CLM_1799		CLM_1799	1830568	1831386	+	caax amino protease family protein	identified by match to protein family HMM PF02517	gene	gene1734	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1799
CLM_1800	CLM_1800		CLM_1800	1831533	1832489	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene1735	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1800
CLM_1801	CLM_1801		CLM_1801	1832901	1833416	+	putative membrane protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF06161	gene	gene1736	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1801
CLM_1802	CLM_1802		CLM_1802	1833738	1834157	+	conserved hypothetical protein		gene	gene1737	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1802
CLM_1803	CLM_1803		CLM_1803	1834179	1835117	+	putative deoxyribonucleoside regulator	identified by match to protein family HMM PF04198	gene	gene1738	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1803
CLM_1804	CLM_1804	deoC	deoC	1835409	1836047	+	deoxyribose-phosphate aldolase	identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126	gene	gene1739	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1804
CLM_1805	CLM_1805	rbsK	rbsK	1836176	1837087	+	ribokinase	identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR02152	gene	gene1740	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1805
CLM_1806	CLM_1806	hisZ	hisZ	1837543	1838811	+	ATP phosphoribosyltransferase%2C regulatory subunit	identified by match to protein family HMM PF00587%3B match to protein family HMM TIGR00443	gene	gene1741	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1806
CLM_1807	CLM_1807	hisG	hisG	1838836	1839474	+	ATP phosphoribosyltransferase	identified by match to protein family HMM PF01634%3B match to protein family HMM TIGR00070	gene	gene1742	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1807
CLM_1808	CLM_1808	hisD	hisD	1839552	1840856	+	histidinol dehydrogenase	identified by match to protein family HMM PF00815%3B match to protein family HMM TIGR00069	gene	gene1743	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1808
CLM_1809	CLM_1809	hisB	hisB	1841006	1841596	+	imidazoleglycerol-phosphate dehydratase	identified by match to protein family HMM PF00475	gene	gene1744	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1809
CLM_1810	CLM_1810	hisH	hisH	1841724	1842329	+	imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit	identified by match to protein family HMM PF00117%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR01855	gene	gene1745	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1810
CLM_1811	CLM_1811	hisA	hisA	1842326	1843054	+	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00007	gene	gene1746	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1811
CLM_1812	CLM_1812	hisC	hisC	1843051	1844115	+	histidinol-phosphate transaminase	identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141	gene	gene1747	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1812
CLM_1813	CLM_1813	hisF	hisF	1844312	1845073	+	imidazoleglycerol phosphate synthase%2C cyclase subunit	identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735	gene	gene1748	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1813
CLM_1814	CLM_1814	hisI	hisI	1845227	1845559	+	phosphoribosyl-AMP cyclohydrolase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01502	gene	gene1749	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1814
CLM_1815	CLM_1815	hisE	hisE	1845687	1846019	+	phosphoribosyl-ATP pyrophosphohydrolase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01503%3B match to protein family HMM TIGR03188	gene	gene1750	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1815
CLM_1816	CLM_1816		CLM_1816	1846155	1846850	+	putative membrane protein	identified by match to protein family HMM PF04143	gene	gene1751	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1816
CLM_1817	CLM_1817		CLM_1817	1846864	1847085	+	conserved hypothetical protein	identified by match to protein family HMM PF01206	gene	gene1752	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1817
CLM_1818	CLM_1818		CLM_1818	1847103	1847630	+	putative membrane protein	identified by match to protein family HMM PF04143	gene	gene1753	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1818
CLM_1819	CLM_1819		CLM_1819	1847661	1848551	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1754	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1819
CLM_1820	CLM_1820		CLM_1820	1848816	1850066	+	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235	gene	gene1755	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1820
CLM_1821	CLM_1821		CLM_1821	1850147	1851847	+	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00070%3B match to protein family HMM PF00581%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992	gene	gene1756	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1821
CLM_1822	CLM_1822		CLM_1822	1852000	1853256	+	putative membrane protein	identified by match to protein family HMM PF04143	gene	gene1757	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1822
CLM_1823	CLM_1823		CLM_1823	1853491	1854198	+	antibiotic ABC transporter%2C ATP-binding protein	identified by similarity to GB:AAF99691.1%3B match to protein family HMM PF00005	gene	gene1758	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1823
CLM_1824	CLM_1824		CLM_1824	1854201	1854932	+	putative lantibiotic ABC transporter%2C permease protein		gene	gene1759	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1824
CLM_1825	CLM_1825		CLM_1825	1854935	1855678	+	putative lantibiotic ABC transporter%2C permease protein		gene	gene1760	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1825
CLM_1826	CLM_1826		CLM_1826	1855795	1856454	+	putative lantibiotic biosynthesis regulatory protein	identified by similarity to SP:P33112%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1761	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1826
CLM_1827	CLM_1827		CLM_1827	1856445	1857824	+	putative lantibiotic biosynthesis sensor histidine kinase	identified by similarity to SP:P33113%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1762	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1827
CLM_1828	CLM_1828	arcA	arcA	1858388	1859614	+	arginine deiminase	identified by match to protein family HMM PF02274%3B match to protein family HMM TIGR01078	gene	gene1763	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1828
CLM_1829	CLM_1829	arcD	arcD	1859717	1861135	+	arginine/ornithine antiporter	identified by match to protein family HMM PF00324	gene	gene1764	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1829
CLM_1830	CLM_1830		CLM_1830	1861354	1862004	-	putative hemolysin III	identified by match to protein family HMM PF03006%3B match to protein family HMM TIGR01065	gene	gene1765	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1830
CLM_1831	CLM_1831		CLM_1831	1862375	1862971	+	conserved hypothetical protein	identified by match to protein family HMM PF08876	gene	gene1766	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1831
CLM_1832	CLM_1832		CLM_1832	1863107	1863247	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1767	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1832
CLM_1833	CLM_1833		CLM_1833	1863340	1863900	+	HD domain protein	identified by match to protein family HMM PF01966	gene	gene1768	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1833
CLM_1834	CLM_1834		CLM_1834	1864454	1866275	+		reverse transcriptase/group II intron%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF00078%3B match to protein family HMM PF08388	pseudogene	gene1769	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1834
CLM_1836	CLM_1836		CLM_1836	1866284	1866360	+			gene	gene1770	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1836
CLM_1837	CLM_1837		CLM_1837	1866813	1867151	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1771	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1837
CLM_1838	CLM_1838		CLM_1838	1867418	1870711	+	helicase%2C Snf2 family	identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271%3B match to protein family HMM PF04434%3B match to protein family HMM PF04851%3B match to protein family HMM PF08455	gene	gene1772	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1838
CLM_1839	CLM_1839		CLM_1839	1870903	1871724	+	RelA/SpoT domain protein	identified by match to protein family HMM PF04607	gene	gene1773	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1839
CLM_1840	CLM_1840		CLM_1840	1871942	1872397	+	conserved hypothetical protein		gene	gene1774	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1840
CLM_1841	CLM_1841		CLM_1841	1872778	1873767	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene1775	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1841
CLM_1842	CLM_1842		CLM_1842	1873916	1875670	+	ABC transporter ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene1776	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1842
CLM_1843	CLM_1843		CLM_1843	1875672	1877396	+	ABC transporter ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF02463	gene	gene1777	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1843
CLM_1844	CLM_1844		CLM_1844	1877788	1878789	+	transcriptional regulator%2C LacI family	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene1778	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1844
CLM_1845	CLM_1845		CLM_1845	1879091	1880038	+	putative glucokinase	identified by similarity to SP:P54495%3B match to protein family HMM PF00480	gene	gene1779	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1845
CLM_1846	CLM_1846		CLM_1846	1880285	1881949	+	glycosyl hydrolase%2C family 13	identified by match to protein family HMM PF00128	gene	gene1780	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1846
CLM_1847	CLM_1847		CLM_1847	1881991	1883649	+	PTS system%2C glucose/glucoside family%2C IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR02003	gene	gene1781	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1847
CLM_1848	CLM_1848		CLM_1848	1883653	1884444	+	endonuclease/exonuclease/phosphatase family protein	identified by match to protein family HMM PF03372	gene	gene1782	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1848
CLM_1849	CLM_1849		CLM_1849	1884669	1885292	+	putative sporulation protein YtaF	identified by match to protein family HMM TIGR02840	gene	gene1783	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1849
CLM_1850	CLM_1850		CLM_1850	1885581	1885916	-	conserved hypothetical protein		gene	gene1784	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1850
CLM_1851	CLM_1851		CLM_1851	1886244	1887809	+	conserved hypothetical protein		gene	gene1785	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1851
CLM_1852	CLM_1852		CLM_1852	1887967	1888422	+	conserved hypothetical protein		gene	gene1786	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1852
CLM_1853	CLM_1853		CLM_1853	1888718	1890820	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene1787	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1853
CLM_1854	CLM_1854		CLM_1854	1890858	1891550	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1788	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1854
CLM_1855	CLM_1855		CLM_1855	1892144	1893370	+	major facilitator family transporter	identified by match to protein family HMM PF07690	gene	gene1789	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1855
CLM_1856	CLM_1856		CLM_1856	1893448	1893654	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1790	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1856
CLM_1857	CLM_1857		CLM_1857	1893924	1894784	-	HAD-superfamily hydrolase%2C subfamily IIB	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene1791	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1857
CLM_1858	CLM_1858		CLM_1858	1894793	1895560	-	transcriptional regulator%2C DeoR family	identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220%3B match to protein family HMM PF08279	gene	gene1792	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1858
CLM_1859	CLM_1859		CLM_1859	1896074	1896613	+	RNA polymerase sigma factor%2C sigma-70 family	identified by match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene1793	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1859
CLM_1860	CLM_1860		CLM_1860	1896803	1896982	+	conserved hypothetical protein		gene	gene1794	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1860
CLM_1861	CLM_1861	colG	colG	1897165	1900794	-	collagenase	identified by similarity to GB:BAA77453.1%3B match to protein family HMM PF00801%3B match to protein family HMM PF01752%3B match to protein family HMM PF04151%3B match to protein family HMM PF08453	gene	gene1795	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1861
CLM_1863	CLM_1863	metF	metF	1901268	1902155	+	methylenetetrahydrofolate reductase (NAD(P)H)	identified by match to protein family HMM PF02219%3B match to protein family HMM TIGR00676	gene	gene1796	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1863
CLM_1864	CLM_1864		CLM_1864	1902310	1902990	+	conserved hypothetical protein	identified by match to protein family HMM PF02965	gene	gene1797	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1864
CLM_1865	CLM_1865		CLM_1865	1902980	1905358	+	putative 5-methyltetrahydrofolate--homocysteine methyltransferase	identified by match to protein family HMM PF00809%3B match to protein family HMM PF02310%3B match to protein family HMM PF02574%3B match to protein family HMM PF02607	gene	gene1798	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1865
CLM_1866	CLM_1866		CLM_1866	1905646	1906062	-	conserved hypothetical protein		gene	gene1799	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1866
CLM_1867	CLM_1867		CLM_1867	1906568	1907140	+	RNA polymerase sigma-70 factor family	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene1800	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1867
CLM_1868	CLM_1868		CLM_1868	1907133	1908581	+	conserved hypothetical protein		gene	gene1801	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1868
CLM_1869	CLM_1869	acoR	acoR	1908931	1910883	+	aco operon transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954	gene	gene1802	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1869
CLM_1870	CLM_1870		CLM_1870	1911052	1911423	+	conserved hypothetical protein	identified by match to protein family HMM PF09585%3B match to protein family HMM TIGR02058	gene	gene1803	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1870
CLM_1871	CLM_1871	acoA	acoA	1911444	1912427	+	TPP-dependent acetoin dehydrogenase complex%2C E1 component%2C alpha subunit	identified by match to protein family HMM PF00676	gene	gene1804	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1871
CLM_1872	CLM_1872	acoB	acoB	1912430	1913401	+	TPP-dependent acetoin dehydrogenase complex%2C E1 component%2C beta subunit	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene1805	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1872
CLM_1873	CLM_1873		CLM_1873	1913454	1914449	+	putative acetoin catabolism protein X	identified by similarity to SP:P27748%3B match to protein family HMM PF01513	gene	gene1806	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1873
CLM_1874	CLM_1874	acoC	acoC	1914485	1915795	+	TPP-dependent acetoin dehydrogenase complex%2C E2 component%2C dihydrolipoyllysine-residue acetyltransferase	identified by similarity to GB:AAA21747.1%3B match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817	gene	gene1807	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1874
CLM_1875	CLM_1875	acoL	acoL	1915808	1917199	+	TPP-dependent acetoin dehydrogenase complex%2C E3 component%2C dihydrolipoyl dehydrogenase	identified by similarity to GB:AAA21748.1%3B match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350	gene	gene1808	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1875
CLM_1876	CLM_1876		CLM_1876	1917224	1918219	+	putative lipoate-protein ligase A	identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00545	gene	gene1809	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1876
CLM_1877	CLM_1877		CLM_1877	1918608	1919753	+	glycine betaine/L-proline ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01186	gene	gene1810	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1877
CLM_1878	CLM_1878		CLM_1878	1919746	1921329	+	glycine betaine/L-proline ABC transporter%2C permease/glycine betaine/L-proline-binding protein	identified by match to protein family HMM PF00528%3B match to protein family HMM PF04069	gene	gene1811	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1878
CLM_1879	CLM_1879	thrC	thrC	1921623	1923104	+	threonine synthase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260	gene	gene1812	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1879
CLM_1880	CLM_1880	thrB	thrB	1923114	1924007	+	homoserine kinase	identified by match to protein family HMM PF00288%3B match to protein family HMM PF08544%3B match to protein family HMM TIGR00191	gene	gene1813	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1880
CLM_1881	CLM_1881		CLM_1881	1924134	1925453	+	aspartate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00657	gene	gene1814	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1881
CLM_1882	CLM_1882	hom	hom	1925675	1926952	+	homoserine dehydrogenase	identified by match to protein family HMM PF00742%3B match to protein family HMM PF01842%3B match to protein family HMM PF03447	gene	gene1815	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1882
CLM_1883	CLM_1883		CLM_1883	1927638	1929548	+	sensory box sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00229	gene	gene1816	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1883
CLM_1884	CLM_1884		CLM_1884	1930057	1931223	+	NADH-dependent butanol dehydrogenase	identified by similarity to SP:P13604%3B match to protein family HMM PF00465	gene	gene1817	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1884
CLM_1885	CLM_1885		CLM_1885	1931552	1932439	+	oxidoreductase%2C NAD/FAD-binding	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene1818	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1885
CLM_1886	CLM_1886	gltA	gltA	1932439	1933821	+	glutamate synthase (NADPH)%2C homotetrameric	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01316	gene	gene1819	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1886
CLM_1887	CLM_1887		CLM_1887	1934050	1936014	+	sensory box sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728	gene	gene1820	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1887
CLM_1888	CLM_1888		CLM_1888	1936021	1936722	+	pentapeptide repeat family protein	identified by match to protein family HMM PF00805	gene	gene1821	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1888
CLM_1889	CLM_1889		CLM_1889	1937145	1938224	+	Ig group 2 domain protein	identified by match to protein family HMM PF02368	gene	gene1822	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1889
CLM_1890	CLM_1890		CLM_1890	1938333	1938536	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1823	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1890
CLM_1891	CLM_1891		CLM_1891	1938716	1938937	+	putative lipoprotein		gene	gene1824	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1891
CLM_1892	CLM_1892		CLM_1892	1939296	1939457	+	conserved hypothetical protein		gene	gene1825	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1892
CLM_1893	CLM_1893		CLM_1893	1939745	1940119	+	conserved domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF08239	gene	gene1826	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1893
CLM_1894	CLM_1894		CLM_1894	1940305	1940529	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1827	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1894
CLM_1895	CLM_1895		CLM_1895	1940997	1941233	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1828	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1895
CLM_1896	CLM_1896		CLM_1896	1941389	1941940	+	conserved hypothetical protein		gene	gene1829	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1896
CLM_1897	CLM_1897		CLM_1897	1941978	1942265	+	conserved domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene1830	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1897
CLM_1898	CLM_1898		CLM_1898	1942766	1943398	+	conserved hypothetical protein		gene	gene1831	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1898
CLM_1899	CLM_1899		CLM_1899	1943431	1943985	+	conserved hypothetical protein	identified by match to protein family HMM PF01814	gene	gene1832	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1899
CLM_1900	CLM_1900	alr	alr	1944423	1945592	+	alanine racemase	identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492	gene	gene1833	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1900
CLM_1901	CLM_1901		CLM_1901	1946051	1947523	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene1834	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1901
CLM_1902	CLM_1902		CLM_1902	1947611	1948951	+	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916	gene	gene1835	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1902
CLM_1903	CLM_1903		CLM_1903	1949191	1950024	+	putative membrane protein	identified by match to protein family HMM PF06161	gene	gene1836	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1903
CLM_1904	CLM_1904		CLM_1904	1950241	1951125	-	oxidoreductase%2C short chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene1837	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1904
CLM_1905	CLM_1905		CLM_1905	1951601	1953607	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene1838	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1905
CLM_1906	CLM_1906		CLM_1906	1954520	1955533	+	KWG leptospira repeat protein	identified by match to protein family HMM PF07656	gene	gene1839	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1906
CLM_1907	CLM_1907		CLM_1907	1955686	1956237	-	conserved hypothetical protein		gene	gene1840	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1907
CLM_1908	CLM_1908		CLM_1908	1956597	1959830	+	helicase%2C SNF2/RAD54 family	identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271%3B match to protein family HMM PF04434%3B match to protein family HMM PF08455	gene	gene1841	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1908
CLM_1909	CLM_1909		CLM_1909	1959886	1960167	-	conserved hypothetical protein	identified by match to protein family HMM PF01980	gene	gene1842	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1909
CLM_1910	CLM_1910		CLM_1910	1960410	1960538	+	conserved hypothetical protein		gene	gene1843	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1910
CLM_1911	CLM_1911		CLM_1911	1960768	1961292	+	formylmethanofuran dehydrogenase E subunit-related protein	identified by match to protein family HMM PF02663	gene	gene1844	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1911
CLM_1912	CLM_1912		CLM_1912	1961429	1963024	+	peptide/opine/nickel uptake ABC transporter%2C PepT family%2C substrate-binding protein	identified by match to protein family HMM PF00496	gene	gene1845	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1912
CLM_1913	CLM_1913		CLM_1913	1963038	1964012	+	peptide/opine/nickel uptake ABC transporter%2C PepT family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1846	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1913
CLM_1914	CLM_1914		CLM_1914	1964016	1964837	+	peptide/opine/nickel uptake ABC transporter%2C PepT family%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1847	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1914
CLM_1915	CLM_1915		CLM_1915	1964868	1966550	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene1848	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1915
CLM_1916	CLM_1916		CLM_1916	1966793	1967380	-	putative DNA polymerase III%2C epsilon subunit	identified by match to protein family HMM PF00929	gene	gene1849	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1916
CLM_1917	CLM_1917		CLM_1917	1967675	1968625	+	conserved hypothetical protein	identified by match to protein family HMM PF06207	gene	gene1850	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1917
CLM_1918	CLM_1918		CLM_1918	1968896	1969531	+	methyltransferase%2C UbiE/COQ5 family	identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene1851	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1918
CLM_1919	CLM_1919		CLM_1919	1969680	1970120	-	heat shock protein	identified by match to protein family HMM PF00011	gene	gene1852	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1919
CLM_1920	CLM_1920		CLM_1920	1970471	1971655	+	major facilitator family protein	identified by match to protein family HMM PF07690	gene	gene1853	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1920
CLM_1921	CLM_1921		CLM_1921	1971806	1972369	+	conserved hypothetical protein	identified by match to protein family HMM PF00440	gene	gene1854	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1921
CLM_1922	CLM_1922		CLM_1922	1972362	1972544	+	transcriptional regulator%2C DeoR family		gene	gene1855	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1922
CLM_1923	CLM_1923	pfkB	pfkB	1972570	1973475	+	1-phosphofructokinase	identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR03168	gene	gene1856	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1923
CLM_1924	CLM_1924		CLM_1924	1973592	1974971	-	amino acid/peptide transporter	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene1857	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1924
CLM_1925	CLM_1925		CLM_1925	1975395	1975550	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1858	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1925
CLM_1926	CLM_1926		CLM_1926	1975702	1976676	+	conserved hypothetical protein		gene	gene1859	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1926
CLM_1927	CLM_1927		CLM_1927	1976787	1977320	-	conserved hypothetical protein		gene	gene1860	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1927
CLM_1928	CLM_1928		CLM_1928	1977583	1977738	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1861	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1928
CLM_1929	CLM_1929		CLM_1929	1977769	1978728	+	kinase%2C PfkB family	identified by match to protein family HMM PF00294%3B match to protein family HMM PF08543	gene	gene1862	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1929
CLM_1930	CLM_1930	safA	safA	1978872	1979507	-	spore coat assembly protein SafA	identified by match to protein family HMM PF00188%3B match to protein family HMM PF01476%3B match to protein family HMM TIGR02899	gene	gene1863	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1930
CLM_1931	CLM_1931		CLM_1931	1979908	1980327	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1864	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1931
CLM_1932	CLM_1932		CLM_1932	1980736	1982739	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene1865	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1932
CLM_1933	CLM_1933		CLM_1933	1983002	1984582	-	putative drug resistance ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1866	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1933
CLM_1934	CLM_1934		CLM_1934	1985048	1985902	+	sulfite/nitrite reductase family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460	gene	gene1867	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1934
CLM_1935	CLM_1935	cheV	cheV	1986112	1987005	-	chemotaxis protein CheV	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584	gene	gene1868	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1935
CLM_1936	CLM_1936		CLM_1936	1987378	1988643	+	ATP-dependent RNA helicase%2C DEAD/DEAH box family	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene1869	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1936
CLM_1937	CLM_1937		CLM_1937	1988966	1989802	+	RNA-binding protein	identified by match to protein family HMM PF00575	gene	gene1870	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1937
CLM_1938	CLM_1938	deaD	deaD	1989982	1991427	+	ATP-dependent RNA helicase DeaD	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880	gene	gene1871	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1938
CLM_1939	CLM_1939		CLM_1939	1991592	1996040	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1872	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1939
CLM_1940	CLM_1940		CLM_1940	1996435	2000502	+	leucine rich repeat protein	identified by match to protein family HMM PF00560%3B match to protein family HMM PF07532	gene	gene1873	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1940
CLM_1941	CLM_1941		CLM_1941	2000906	2001835	+	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain protein	identified by match to protein family HMM PF01832	gene	gene1874	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1941
CLM_1942	CLM_1942		CLM_1942	2001961	2002476	-	ferritin family protein	identified by match to protein family HMM PF00210	gene	gene1875	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1942
CLM_1943	CLM_1943		CLM_1943	2002929	2003783	+	chemotaxis response regulator/CheC-like domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00072%3B match to protein family HMM PF04509	gene	gene1876	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1943
CLM_1944	CLM_1944	cheX	cheX	2003783	2004244	+	chemotaxis protein CheX	identified by match to protein family HMM PF04509	gene	gene1877	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1944
CLM_1945	CLM_1945		CLM_1945	2004417	2005775	-	putative membrane protein	identified by match to protein family HMM PF07670	gene	gene1878	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1945
CLM_1946	CLM_1946		CLM_1946	2006514	2006717	+	small%2C acid-soluble spore protein alpha	identified by match to protein family HMM PF00269	gene	gene1879	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1946
CLM_1947	CLM_1947		CLM_1947	2006779	2006979	+	small%2C acid-soluble spore protein beta	identified by match to protein family HMM PF00269	gene	gene1880	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1947
CLM_1948	CLM_1948		CLM_1948	2007171	2007500	-		conserved hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error	pseudogene	gene1881	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1948
CLM_1950	CLM_1950		CLM_1950	2008418	2009398	+	site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899	gene	gene1882	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1950
CLM_1951	CLM_1951		CLM_1951	2009714	2010187	-	conserved hypothetical protein		gene	gene1883	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1951
CLM_1952	CLM_1952	lexA	lexA	2010486	2011091	+	LexA repressor	identified by match to protein family HMM PF00717%3B match to protein family HMM PF01726%3B match to protein family HMM TIGR00498	gene	gene1884	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1952
CLM_1953	CLM_1953		CLM_1953	2011288	2012571	-	aluminum resistance protein	identified by match to protein family HMM PF01053%3B match to protein family HMM PF06838	gene	gene1885	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1953
CLM_1954	CLM_1954	hfq	hfq	2012672	2012929	-	RNA chaperone Hfq	identified by match to protein family HMM PF01423%3B match to protein family HMM TIGR02383	gene	gene1886	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1954
CLM_1955	CLM_1955	miaA	miaA	2013015	2013950	-	tRNA delta(2)-isopentenylpyrophosphate transferase	identified by match to protein family HMM PF01715%3B match to protein family HMM TIGR00174	gene	gene1887	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1955
CLM_1956	CLM_1956		CLM_1956	2013965	2015965	-	DNA mismatch repair protein MutL	identified by match to protein family HMM PF01119%3B match to protein family HMM PF08676%3B match to protein family HMM TIGR00585	gene	gene1888	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1956
CLM_1957	CLM_1957	mutS	mutS	2016099	2018897	-	DNA mismatch repair protein MutS	identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070	gene	gene1889	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1957
CLM_1958	CLM_1958	miaB	miaB	2018977	2020329	-	tRNA-i(6)A37 thiotransferase enzyme MiaB	identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574	gene	gene1890	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1958
CLM_1959	CLM_1959		CLM_1959	2020801	2021991	+	aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155	gene	gene1891	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1959
CLM_1960	CLM_1960		CLM_1960	2022076	2022237	+	conserved hypothetical protein		gene	gene1892	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1960
CLM_1961	CLM_1961	aspB	aspB	2022292	2023482	+	aspartate aminotransferase	identified by match to protein family HMM PF00155	gene	gene1893	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1961
CLM_1962	CLM_1962		CLM_1962	2023513	2024379	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1894	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1962
CLM_1963	CLM_1963		CLM_1963	2024461	2025519	-	spore coat protein%2C CotS family	identified by match to protein family HMM TIGR02906	gene	gene1895	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1963
CLM_1964	CLM_1964		CLM_1964	2025767	2027683	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog	identified by match to protein family HMM PF00575%3B match to protein family HMM PF02401%3B match to protein family HMM TIGR00216	gene	gene1896	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1964
CLM_1965	CLM_1965	cmk	cmk	2027747	2028400	-	cytidylate kinase	identified by match to protein family HMM PF02224%3B match to protein family HMM TIGR00017	gene	gene1897	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1965
CLM_1966	CLM_1966	aroH	aroH	2028476	2028850	-	chorismate mutase	identified by match to protein family HMM PF07736%3B match to protein family HMM TIGR01796	gene	gene1898	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1966
CLM_1967	CLM_1967		CLM_1967	2028847	2030070	-	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01266%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00275	gene	gene1899	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1967
CLM_1968	CLM_1968	gluD	gluD	2030364	2031629	-	glutamate dehydrogenase%2C NAD-specific	identified by match to protein family HMM PF00208%3B match to protein family HMM PF02812	gene	gene1900	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1968
CLM_1969	CLM_1969		CLM_1969	2031863	2032747	-	transcriptional regulator%2C RpiR family	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene1901	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1969
CLM_1970	CLM_1970	rluB	rluB	2033129	2033839	-	ribosomal large subunit pseudouridine synthase B	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093	gene	gene1902	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1970
CLM_1971	CLM_1971		CLM_1971	2034272	2035561	-	conserved hypothetical protein		gene	gene1903	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1971
CLM_1972	CLM_1972		CLM_1972	2035659	2036939	-	conserved hypothetical protein	identified by match to protein family HMM PF06354	gene	gene1904	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1972
CLM_1973	CLM_1973		CLM_1973	2037234	2038637	-	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene1905	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1973
CLM_1974	CLM_1974		CLM_1974	2039007	2039198	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1906	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1974
CLM_1975	CLM_1975		CLM_1975	2039587	2041608	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1907	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1975
CLM_1976	CLM_1976		CLM_1976	2041652	2042338	-	putative cytochrome c-type biogenesis protein	identified by match to protein family HMM PF02683	gene	gene1908	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1976
CLM_1977	CLM_1977		CLM_1977	2042340	2042771	-	thioredoxin family protein	identified by match to protein family HMM PF00085	gene	gene1909	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1977
CLM_1978	CLM_1978		CLM_1978	2042886	2043722	-	hydrolase%2C carbon-nitrogen family	identified by match to protein family HMM PF00795	gene	gene1910	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1978
CLM_1979	CLM_1979		CLM_1979	2043853	2044407	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1911	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1979
CLM_1980	CLM_1980		CLM_1980	2044819	2046252	+	transporter%2C CPA2 family	identified by match to protein family HMM PF00999%3B match to protein family HMM PF02080	gene	gene1912	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1980
CLM_1981	CLM_1981	pcaC	pcaC	2046377	2046721	-	4-carboxymuconolactone decarboxylase	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene1913	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1981
CLM_1982	CLM_1982		CLM_1982	2046859	2047374	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1914	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1982
CLM_1983	CLM_1983		CLM_1983	2047559	2048053	-	putative lipoprotein		gene	gene1915	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1983
CLM_1984	CLM_1984		CLM_1984	2048287	2048598	-	conserved hypothetical protein	identified by match to protein family HMM PF01906	gene	gene1916	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1984
CLM_1985	CLM_1985		CLM_1985	2048579	2048812	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1917	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1985
CLM_1986	CLM_1986		CLM_1986	2048946	2049188	+	conserved hypothetical protein		gene	gene1918	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1986
CLM_1987	CLM_1987		CLM_1987	2049191	2050915	+	sensory box-containing [Fe] hydrogenase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02906%3B match to protein family HMM PF04060%3B match to protein family HMM TIGR00229	gene	gene1919	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1987
CLM_1988	CLM_1988		CLM_1988	2050912	2052081	+	sporulation domain protein	identified by match to protein family HMM PF07228	gene	gene1920	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1988
CLM_1989	CLM_1989		CLM_1989	2052217	2053956	+	sensory box-containing [Fe] hydrogenase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02906%3B match to protein family HMM PF04060%3B match to protein family HMM TIGR00229	gene	gene1921	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1989
CLM_1990	CLM_1990	hypE	hypE	2054309	2055313	-	hydrogenase expression/formation protein HypE	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR02124	gene	gene1922	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1990
CLM_1991	CLM_1991	hypD	hypD	2055481	2056554	-	hydrogenase expression/formation protein HypD	identified by match to protein family HMM PF01924	gene	gene1923	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1991
CLM_1992	CLM_1992	hypC	hypC	2056547	2056774	-	hydrogenase assembly chaperone HypC/HupF	identified by match to protein family HMM PF01455%3B match to protein family HMM TIGR00074	gene	gene1924	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1992
CLM_1993	CLM_1993	hypF	hypF	2056737	2059175	-	[NiFe] hydrogenase maturation protein HypF	identified by match to protein family HMM PF00708%3B match to protein family HMM PF01300%3B match to protein family HMM PF07503%3B match to protein family HMM TIGR00143	gene	gene1925	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1993
CLM_1994	CLM_1994		CLM_1994	2059159	2059419	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene1926	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1994
CLM_1995	CLM_1995		CLM_1995	2059674	2060189	-	heme/steroid binding domain protein	identified by match to protein family HMM PF00173	gene	gene1927	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1995
CLM_1996	CLM_1996		CLM_1996	2060349	2060765	-	hydrogenase maturation protease	identified by match to protein family HMM PF01750%3B match to protein family HMM TIGR00072	gene	gene1928	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1996
CLM_1997	CLM_1997	hupL	hupL	2060798	2062213	-	[Ni/Fe] hydrogenase%2C large subunit	identified by match to protein family HMM PF00374	gene	gene1929	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1997
CLM_1998	CLM_1998	hupS	hupS	2062315	2063187	-	[Ni/Fe] hydrogenase%2C small subunit	identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR00391	gene	gene1930	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1998
CLM_1999	CLM_1999		CLM_1999	2063455	2064156	+	TraX family protein		gene	gene1931	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_1999
CLM_2000	CLM_2000		CLM_2000	2064577	2064744	+	conserved domain protein		gene	gene1932	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2000
CLM_2001	CLM_2001	carB	carB	2065420	2068626	-	carbamoyl-phosphate synthase%2C large subunit	identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02142%3B match to protein family HMM PF02655%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR01369	gene	gene1933	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2001
CLM_2002	CLM_2002	carA	carA	2068654	2069703	-	carbamoyl-phosphate synthase%2C small subunit	identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368	gene	gene1934	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2002
CLM_2003	CLM_2003		CLM_2003	2070219	2070386	+	conserved domain protein		gene	gene1935	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2003
CLM_2004	CLM_2004		CLM_2004	2070988	2071611	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF01061	gene	gene1936	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2004
CLM_2005	CLM_2005		CLM_2005	2071854	2072054	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene1937	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2005
CLM_2006	CLM_2006		CLM_2006	2072255	2073811	-	drug resistance ABC transporter%2C RA1 family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1938	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2006
CLM_2007	CLM_2007		CLM_2007	2074173	2075906	-	iron hydrogenase 1	identified by similarity to SP:P29166%3B match to protein family HMM PF00037%3B match to protein family HMM PF00111%3B match to protein family HMM PF02256%3B match to protein family HMM PF02906%3B match to protein family HMM TIGR02512	gene	gene1939	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2007
CLM_2008	CLM_2008		CLM_2008	2075926	2077821	-	putative [Fe] hydrogenase%2C electron-transfer subunit	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512	gene	gene1940	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2008
CLM_2009	CLM_2009		CLM_2009	2077833	2078312	-	putative Fe] hydrogenase%2C electron-transfer subunit	identified by match to protein family HMM PF01257	gene	gene1941	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2009
CLM_2010	CLM_2010		CLM_2010	2078787	2079974	-	transporter%2C CPA2 family	identified by match to protein family HMM PF00999	gene	gene1942	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2010
CLM_2011	CLM_2011		CLM_2011	2080234	2081112	-	ADP-ribosylglycohydrolase family protein	identified by match to protein family HMM PF03747	gene	gene1943	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2011
CLM_2012	CLM_2012		CLM_2012	2081352	2082446	+	putative membrane protein	identified by match to protein family HMM PF01594	gene	gene1944	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2012
CLM_2013	CLM_2013		CLM_2013	2082556	2083692	-	putative serine-type D-Ala-D-Ala carboxypeptidase	identified by match to protein family HMM PF00768	gene	gene1945	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2013
CLM_2014	CLM_2014		CLM_2014	2083876	2084388	+	conserved hypothetical protein		gene	gene1946	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2014
CLM_2015	CLM_2015	ytfJ	ytfJ	2084456	2084896	+	sporulation protein YtfJ	identified by match to protein family HMM PF09579%3B match to protein family HMM TIGR02874	gene	gene1947	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2015
CLM_2016	CLM_2016	scpB	scpB	2084957	2085538	-	segregation and condensation protein B	identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281	gene	gene1948	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2016
CLM_2017	CLM_2017	scpA	scpA	2085531	2086277	-	segregation and condensation protein A	identified by match to protein family HMM PF02616	gene	gene1949	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2017
CLM_2018	CLM_2018		CLM_2018	2086252	2086842	-		conserved domain protein%3B this gene contains a premature stop which is not the result of sequencing error	pseudogene	gene1950	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2018
CLM_2020	CLM_2020	dacF	dacF	2087054	2088277	-	serine-type D-Ala-D-Ala carboxypeptidase	identified by similarity to SP:P38422%3B match to protein family HMM PF00768%3B match to protein family HMM PF07943	gene	gene1951	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2020
CLM_2021	CLM_2021		CLM_2021	2088400	2089122	-	conserved hypothetical protein		gene	gene1952	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2021
CLM_2022	CLM_2022		CLM_2022	2089281	2090363	-	endonuclease/exonuclease/phosphatase family protein	identified by match to protein family HMM PF03372	gene	gene1953	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2022
CLM_2023	CLM_2023		CLM_2023	2090481	2090729	-	conserved hypothetical protein		gene	gene1954	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2023
CLM_2024	CLM_2024	pdp	pdp	2090836	2092140	-	pyrimidine-nucleoside phosphorylase	identified by similarity to SP:P39142%3B match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM PF07831%3B match to protein family HMM TIGR02644	gene	gene1955	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2024
CLM_2025	CLM_2025	punA	punA	2092426	2093241	-	purine nucleoside phosphorylase I%2C inosine and guanosine-specific	identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01697%3B match to protein family HMM TIGR01700	gene	gene1956	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2025
CLM_2026	CLM_2026	xerD	xerD	2093279	2094154	-	tyrosine recombinase XerD	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02225	gene	gene1957	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2026
CLM_2027	CLM_2027		CLM_2027	2094206	2094433	-	conserved hypothetical protein		gene	gene1958	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2027
CLM_2028	CLM_2028	spoIIM	spoIIM	2094424	2095077	-	stage II sporulation protein M	identified by match to protein family HMM PF01944%3B match to protein family HMM TIGR02831	gene	gene1959	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2028
CLM_2029	CLM_2029		CLM_2029	2095118	2095231	+	conserved hypothetical protein		gene	gene1960	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2029
CLM_2030	CLM_2030		CLM_2030	2095284	2095820	-	hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00052	gene	gene1961	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2030
CLM_2031	CLM_2031		CLM_2031	2096314	2097840	-	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene1962	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2031
CLM_2032	CLM_2032		CLM_2032	2098656	2099414	-	nlpC/P60 family protein	identified by match to protein family HMM PF00877	gene	gene1963	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2032
CLM_2033	CLM_2033		CLM_2033	2100014	2100127	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1964	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2033
CLM_2034	CLM_2034		CLM_2034	2101449	2102027	-	conserved hypothetical protein		gene	gene1965	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2034
CLM_2035	CLM_2035		CLM_2035	2102706	2103293	-	conserved hypothetical protein		gene	gene1966	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2035
CLM_2036	CLM_2036		CLM_2036	2103422	2104180	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF08239	gene	gene1967	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2036
CLM_2037	CLM_2037		CLM_2037	2104180	2104353	-	conserved hypothetical protein		gene	gene1968	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2037
CLM_2038	CLM_2038		CLM_2038	2104355	2104579	-	conserved domain protein		gene	gene1969	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2038
CLM_2039	CLM_2039		CLM_2039	2104791	2105270	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1970	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2039
CLM_2040	CLM_2040		CLM_2040	2105519	2105926	+	hypothetical protein	identified by glimmer%3B putative	gene	gene1971	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2040
CLM_2041	CLM_2041		CLM_2041	2106021	2106188	-	conserved hypothetical protein		gene	gene1972	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2041
CLM_2042	CLM_2042		CLM_2042	2106190	2106516	-	conserved hypothetical protein		gene	gene1973	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2042
CLM_2043	CLM_2043		CLM_2043	2106528	2107985	-	conserved hypothetical protein		gene	gene1974	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2043
CLM_2044	CLM_2044		CLM_2044	2107992	2109149	-	conserved hypothetical protein		gene	gene1975	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2044
CLM_2045	CLM_2045		CLM_2045	2109153	2110022	-	conserved hypothetical protein		gene	gene1976	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2045
CLM_2046	CLM_2046		CLM_2046	2110038	2113964	-	phage tail tape measure protein%2C family	identified by match to protein family HMM TIGR01760	gene	gene1977	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2046
CLM_2047	CLM_2047		CLM_2047	2114021	2114140	-	conserved hypothetical protein		gene	gene1978	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2047
CLM_2048	CLM_2048		CLM_2048	2114254	2114646	-	conserved hypothetical protein		gene	gene1979	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2048
CLM_2049	CLM_2049		CLM_2049	2114704	2115285	-	phage major tail protein%2C Phi13 family	identified by match to protein family HMM TIGR01603	gene	gene1980	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2049
CLM_2050	CLM_2050		CLM_2050	2115349	2115705	-	conserved hypothetical protein		gene	gene1981	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2050
CLM_2051	CLM_2051		CLM_2051	2115721	2116080	-	phage protein%2C HK97 gp10 family	identified by match to protein family HMM TIGR01725	gene	gene1982	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2051
CLM_2052	CLM_2052		CLM_2052	2116081	2116449	-	phage head-tail adaptor protein	identified by match to protein family HMM TIGR01563	gene	gene1983	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2052
CLM_2053	CLM_2053		CLM_2053	2116439	2116732	-	conserved hypothetical protein	identified by match to protein family HMM TIGR01560	gene	gene1984	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2053
CLM_2054	CLM_2054		CLM_2054	2116817	2118049	-	phage major capsid protein%2C HK97 family	identified by match to protein family HMM PF05065%3B match to protein family HMM TIGR01554	gene	gene1985	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2054
CLM_2055	CLM_2055		CLM_2055	2118102	2118845	-	serine protease	identified by match to protein family HMM PF00574	gene	gene1986	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2055
CLM_2056	CLM_2056		CLM_2056	2118838	2120088	-	phage portal protein%2C HK97 family	identified by match to protein family HMM PF04860%3B match to protein family HMM TIGR01537	gene	gene1987	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2056
CLM_2057	CLM_2057		CLM_2057	2120132	2120293	-	conserved hypothetical protein		gene	gene1988	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2057
CLM_2058	CLM_2058		CLM_2058	2120338	2122056	-	putative phage terminase%2C large subunit	identified by match to protein family HMM PF03354	gene	gene1989	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2058
CLM_2059	CLM_2059		CLM_2059	2122049	2122510	-	phage terminase%2C small subunit%2C P27 family	identified by match to protein family HMM PF05119%3B match to protein family HMM TIGR01558	gene	gene1990	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2059
CLM_2060	CLM_2060		CLM_2060	2122646	2123050	-	HNH endonuclease domain protein	identified by match to protein family HMM PF01844	gene	gene1991	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2060
CLM_2061	CLM_2061		CLM_2061	2123118	2123282	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1992	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2061
CLM_2062	CLM_2062		CLM_2062	2123360	2124691	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1993	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2062
CLM_2063	CLM_2063		CLM_2063	2124878	2125438	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1994	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2063
CLM_2064	CLM_2064		CLM_2064	2125608	2125829	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1995	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2064
CLM_2065	CLM_2065		CLM_2065	2125845	2127257	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1996	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2065
CLM_2066	CLM_2066		CLM_2066	2127299	2127508	-	hypothetical protein	identified by glimmer%3B putative	gene	gene1997	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2066
CLM_2067	CLM_2067		CLM_2067	2127584	2127904	-	conserved hypothetical protein		gene	gene1998	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2067
CLM_2068	CLM_2068		CLM_2068	2127955	2128209	-	conserved hypothetical protein		gene	gene1999	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2068
CLM_2069	CLM_2069		CLM_2069	2128283	2128804	-	GIY-YIG domain protein	identified by match to protein family HMM PF01541	gene	gene2000	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2069
CLM_2070	CLM_2070		CLM_2070	2129199	2129636	-	conserved hypothetical protein		gene	gene2001	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2070
CLM_2071	CLM_2071		CLM_2071	2129668	2130345	-	conserved hypothetical protein		gene	gene2002	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2071
CLM_2072	CLM_2072		CLM_2072	2130648	2133542	-	conserved hypothetical protein		gene	gene2003	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2072
CLM_2073	CLM_2073		CLM_2073	2133661	2133825	-	conserved hypothetical protein		gene	gene2004	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2073
CLM_2074	CLM_2074		CLM_2074	2134183	2135319	-	conserved hypothetical protein		gene	gene2005	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2074
CLM_2075	CLM_2075		CLM_2075	2135364	2136317	-	conserved hypothetical protein		gene	gene2006	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2075
CLM_2076	CLM_2076		CLM_2076	2136388	2137194	-	conserved hypothetical protein		gene	gene2007	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2076
CLM_2077	CLM_2077		CLM_2077	2137245	2137403	-	conserved hypothetical protein		gene	gene2008	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2077
CLM_2078	CLM_2078		CLM_2078	2137793	2138011	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2009	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2078
CLM_2079	CLM_2079		CLM_2079	2138132	2138788	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2010	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2079
CLM_2080	CLM_2080		CLM_2080	2138920	2139078	-	conserved hypothetical protein		gene	gene2011	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2080
CLM_2081	CLM_2081		CLM_2081	2139071	2139400	-	conserved hypothetical protein		gene	gene2012	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2081
CLM_2082	CLM_2082		CLM_2082	2139680	2139883	+	conserved hypothetical protein		gene	gene2013	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2082
CLM_2083	CLM_2083		CLM_2083	2140007	2141428	+	site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589%3B match to protein family HMM PF04313	gene	gene2014	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2083
CLM_2084	CLM_2084		CLM_2084	2141509	2141733	-	conserved hypothetical protein		gene	gene2015	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2084
CLM_2085	CLM_2085		CLM_2085	2141784	2142467	-	conserved hypothetical protein		gene	gene2016	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2085
CLM_2086	CLM_2086		CLM_2086	2142915	2143403	-	conserved hypothetical protein		gene	gene2017	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2086
CLM_2087	CLM_2087		CLM_2087	2143403	2144395	-	site-specific recombinase%2C phage integrase family	identified by similarity to SP:P46352%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899	gene	gene2018	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2087
CLM_2088	CLM_2088	spo0A	spo0A	2144531	2145352	-	sporulation transcription factor Spo0A	identified by match to protein family HMM PF00072%3B match to protein family HMM PF08769%3B match to protein family HMM TIGR02875	gene	gene2019	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2088
CLM_2089	CLM_2089	spoIVB	spoIVB	2145782	2147008	-	stage IV sporulation protein B	identified by match to protein family HMM PF05580%3B match to protein family HMM TIGR02860	gene	gene2020	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2089
CLM_2090	CLM_2090	metA	metA	2147430	2148326	-	homoserine O-succinyltransferase	identified by match to protein family HMM PF04204%3B match to protein family HMM TIGR01001	gene	gene2021	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2090
CLM_2091	CLM_2091	hom	hom	2148353	2149579	-	homoserine dehydrogenase	identified by match to protein family HMM PF00742%3B match to protein family HMM PF03447	gene	gene2022	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2091
CLM_2092	CLM_2092		CLM_2092	2149619	2150899	-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein	identified by match to protein family HMM PF01053%3B match to protein family HMM TIGR01326	gene	gene2023	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2092
CLM_2094	CLM_2094	recN	recN	2151198	2152901	-	DNA repair protein recN	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00634	gene	gene2024	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2094
CLM_2095	CLM_2095	argR	argR	2152914	2153366	-	arginine repressor	identified by match to protein family HMM PF01316%3B match to protein family HMM PF02863%3B match to protein family HMM TIGR01529	gene	gene2025	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2095
CLM_2096	CLM_2096	ppnK	ppnK	2153368	2154213	-	ATP-NAD kinase	identified by match to protein family HMM PF01513	gene	gene2026	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2096
CLM_2097	CLM_2097		CLM_2097	2154213	2155034	-	putative hemolysin A	identified by match to protein family HMM PF01479%3B match to protein family HMM PF01728%3B match to protein family HMM TIGR00478	gene	gene2027	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2097
CLM_2098	CLM_2098	dxs	dxs	2155056	2156924	-	1-deoxy-D-xylulose-5-phosphate synthase	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204	gene	gene2028	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2098
CLM_2099	CLM_2099		CLM_2099	2156925	2157494	-	conserved hypothetical protein		gene	gene2029	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2099
CLM_2100	CLM_2100	ispA	ispA	2158297	2159169	-	geranyltranstransferase	identified by match to protein family HMM PF00348	gene	gene2030	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2100
CLM_2101	CLM_2101	xseB	xseB	2159294	2159509	-	exodeoxyribonuclease VII%2C small subunit	identified by match to protein family HMM PF02609	gene	gene2031	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2101
CLM_2102	CLM_2102	xseA	xseA	2159632	2160837	-	exodeoxyribonuclease VII%2C large subunit	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237	gene	gene2032	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2102
CLM_2103	CLM_2103	nusB	nusB	2160908	2161339	-	N utilization substance protein B	identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951	gene	gene2033	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2103
CLM_2104	CLM_2104	asp	asp	2161478	2161873	-	alkaline shock protein	identified by match to protein family HMM PF03780	gene	gene2034	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2104
CLM_2105	CLM_2105		CLM_2105	2161955	2162479	-	stage III sporulation protein AH		gene	gene2035	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2105
CLM_2106	CLM_2106		CLM_2106	2162541	2163137	-	stage III sporulation protein AG	identified by match to protein family HMM TIGR02830	gene	gene2036	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2106
CLM_2107	CLM_2107	spoIIIAF	spoIIIAF	2163275	2163865	-	stage III sporulation protein AF	identified by match to protein family HMM PF09581%3B match to protein family HMM TIGR02896	gene	gene2037	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2107
CLM_2108	CLM_2108		CLM_2108	2163901	2165064	-	stage III sporulation protein AE	identified by match to protein family HMM PF09546%3B match to protein family HMM TIGR02829	gene	gene2038	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2108
CLM_2109	CLM_2109		CLM_2109	2165073	2165456	-	stage III sporulation protein AD	identified by match to protein family HMM PF09555%3B match to protein family HMM TIGR02849	gene	gene2039	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2109
CLM_2110	CLM_2110		CLM_2110	2165483	2165680	-	stage III sporulation protein AC	identified by match to protein family HMM PF06686%3B match to protein family HMM TIGR02848	gene	gene2040	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2110
CLM_2111	CLM_2111		CLM_2111	2165723	2166241	-	stage III sporulation protein AB	identified by match to protein family HMM PF09548%3B match to protein family HMM TIGR02833	gene	gene2041	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2111
CLM_2112	CLM_2112		CLM_2112	2166278	2167201	-	stage III sporulation protein AA	identified by match to protein family HMM TIGR02858	gene	gene2042	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2112
CLM_2113	CLM_2113		CLM_2113	2167396	2167815	-	conserved hypothetical protein		gene	gene2043	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2113
CLM_2114	CLM_2114	efp	efp	2167856	2168413	-	translation elongation factor P	identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM PF09285%3B match to protein family HMM TIGR00038	gene	gene2044	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2114
CLM_2115	CLM_2115	aroQ	aroQ	2168502	2168945	-	3-dehydroquinate dehydratase%2C type II	identified by match to protein family HMM PF01220%3B match to protein family HMM TIGR01088	gene	gene2045	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2115
CLM_2116	CLM_2116	aroK	aroK	2169100	2169612	-	shikimate kinase	identified by match to protein family HMM PF01202	gene	gene2046	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2116
CLM_2117	CLM_2117		CLM_2117	2169746	2170240	-	conserved hypothetical protein		gene	gene2047	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2117
CLM_2118	CLM_2118		CLM_2118	2170246	2170692	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2048	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2118
CLM_2119	CLM_2119		CLM_2119	2170708	2171397	-	conserved hypothetical protein		gene	gene2049	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2119
CLM_2120	CLM_2120		CLM_2120	2171425	2171871	-	putative lipoprotein		gene	gene2050	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2120
CLM_2121	CLM_2121		CLM_2121	2171850	2172290	-	prepilin-type N-terminal cleavage/methylation domain protein	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene2051	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2121
CLM_2122	CLM_2122		CLM_2122	2172287	2172733	-	prepilin-type N-terminal cleavage/methylation domain protein	identified by match to protein family HMM TIGR02532	gene	gene2052	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2122
CLM_2123	CLM_2123		CLM_2123	2172714	2173166	-	conserved hypothetical protein		gene	gene2053	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2123
CLM_2124	CLM_2124		CLM_2124	2173568	2173972	-	putative type IV pilin	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene2054	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2124
CLM_2125	CLM_2125		CLM_2125	2174158	2175348	-	bacterial type II secretion system protein F	identified by match to protein family HMM PF00482	gene	gene2055	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2125
CLM_2126	CLM_2126		CLM_2126	2175493	2177022	-	general secretion pathway protein E	identified by match to protein family HMM PF00437%3B match to protein family HMM PF05157	gene	gene2056	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2126
CLM_2127	CLM_2127		CLM_2127	2177095	2177244	-	conserved hypothetical protein		gene	gene2057	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2127
CLM_2128	CLM_2128		CLM_2128	2177298	2178371	-	putative lipoprotein		gene	gene2058	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2128
CLM_2129	CLM_2129	dapF	dapF	2178372	2179193	-	diaminopimelate epimerase	identified by match to protein family HMM PF01678%3B match to protein family HMM TIGR00652	gene	gene2059	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2129
CLM_2130	CLM_2130		CLM_2130	2179447	2181177	+	fibronectin-binding protein	identified by match to protein family HMM PF05670%3B match to protein family HMM PF05833	gene	gene2060	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2130
CLM_2131	CLM_2131	truA	truA	2181246	2181986	+	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071	gene	gene2061	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2131
CLM_2132	CLM_2132		CLM_2132	2182301	2182438	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene2062	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2132
CLM_2133	CLM_2133		CLM_2133	2182474	2182851	-	HIT family protein	identified by match to protein family HMM PF01230	gene	gene2063	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2133
CLM_2134	CLM_2134		CLM_2134	2183364	2184767	+	glutamate decarboxylase	identified by match to protein family HMM PF00282%3B match to protein family HMM TIGR01788	gene	gene2064	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2134
CLM_2135	CLM_2135		CLM_2135	2185200	2185541	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2065	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2135
CLM_2136	CLM_2136		CLM_2136	2186046	2187755	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2066	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2136
CLM_2137	CLM_2137	cloSI	cloSI	2188225	2189799	-	clostripain	identified by match to protein family HMM PF03415%3B match to protein family HMM TIGR02806	gene	gene2067	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2137
CLM_2138	CLM_2138		CLM_2138	2190279	2190935	+	conserved hypothetical protein		gene	gene2068	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2138
CLM_2139	CLM_2139		CLM_2139	2190937	2191638	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2069	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2139
CLM_2140	CLM_2140		CLM_2140	2191628	2193541	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene2070	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2140
CLM_2141	CLM_2141	msrA	msrA	2193942	2194415	-	peptide-methionine (S)-S-oxide reductase	identified by match to protein family HMM PF01625%3B match to protein family HMM TIGR00401	gene	gene2071	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2141
CLM_2142	CLM_2142		CLM_2142	2195633	2197096	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene2072	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2142
CLM_2143	CLM_2143		CLM_2143	2197093	2197779	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2073	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2143
CLM_2144	CLM_2144		CLM_2144	2198062	2198838	-	putative membrane protein		gene	gene2074	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2144
CLM_2145	CLM_2145		CLM_2145	2198994	2199845	-	ABC transporter%2C permease protein		gene	gene2075	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2145
CLM_2146	CLM_2146		CLM_2146	2199845	2200588	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2076	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2146
CLM_2147	CLM_2147		CLM_2147	2200548	2200721	+	conserved hypothetical protein		gene	gene2077	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2147
CLM_2148	CLM_2148		CLM_2148	2201178	2203040	-	ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2078	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2148
CLM_2149	CLM_2149		CLM_2149	2203037	2205364	-	putative ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2079	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2149
CLM_2150	CLM_2150		CLM_2150	2205768	2206211	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene2080	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2150
CLM_2151	CLM_2151	moeB	moeB	2206523	2207206	-	molybdopterin biosynthesis protein MoeB	identified by match to protein family HMM PF00899	gene	gene2081	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2151
CLM_2152	CLM_2152	moaD	moaD	2207208	2207435	-	molybdopterin converting factor subunit 1	identified by match to protein family HMM PF02597	gene	gene2082	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2152
CLM_2153	CLM_2153	aor	aor	2207588	2209405	-	aldehyde ferredoxin oxidoreductase%2C tungsten-containing	identified by match to protein family HMM PF01314%3B match to protein family HMM PF02730	gene	gene2083	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2153
CLM_2154	CLM_2154	aorR	aorR	2209814	2211709	-	aor transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM TIGR00229	gene	gene2084	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2154
CLM_2155	CLM_2155		CLM_2155	2211759	2212199	-	MOSC domain protein	identified by match to protein family HMM PF03473	gene	gene2085	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2155
CLM_2156	CLM_2156	moaC	moaC	2212201	2212680	-	molybdenum cofactor biosynthesis protein C	identified by match to protein family HMM PF01967%3B match to protein family HMM TIGR00581	gene	gene2086	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2156
CLM_2157	CLM_2157	moaA	moaA	2212684	2213643	-	molybdenum cofactor biosynthesis protein A	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666	gene	gene2087	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2157
CLM_2158	CLM_2158		CLM_2158	2213702	2215606	-	molybdopterin cofactor synthesis/binding domain protein	identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177	gene	gene2088	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2158
CLM_2159	CLM_2159	moeA	moeA	2215618	2216844	-	molybdopterin biosynthesis enzyme MoeA	identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177	gene	gene2089	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2159
CLM_2160	CLM_2160	mog	mog	2216868	2217356	-	molybdopterin biosynthesis enzyme Mog	identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177	gene	gene2090	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2160
CLM_2161	CLM_2161	tupC	tupC	2217451	2218143	-	tungstate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2091	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2161
CLM_2162	CLM_2162	tupB	tupB	2218140	2218811	-	tungstate ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene2092	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2162
CLM_2163	CLM_2163		CLM_2163	2218820	2219671	-	tungstate ABC transporter%2C tungstate-binding protein	identified by match to protein family HMM PF01547	gene	gene2093	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2163
CLM_2164	CLM_2164		CLM_2164	2219890	2221212	-	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene2094	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2164
CLM_2165	CLM_2165		CLM_2165	2221212	2221409	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2095	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2165
CLM_2166	CLM_2166		CLM_2166	2221650	2222294	-	putative membrane protein	identified by match to protein family HMM PF09335	gene	gene2096	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2166
CLM_2167	CLM_2167		CLM_2167	2222616	2223287	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2097	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2167
CLM_2168	CLM_2168		CLM_2168	2223302	2224765	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene2098	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2168
CLM_2169	CLM_2169		CLM_2169	2225101	2225259	+	conserved hypothetical protein		gene	gene2099	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2169
CLM_2170	CLM_2170		CLM_2170	2225564	2227321	-	putative ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2100	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2170
CLM_2171	CLM_2171		CLM_2171	2227318	2229048	-	ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2101	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2171
CLM_2172	CLM_2172		CLM_2172	2229163	2229984	+	ABC transporter transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene2102	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2172
CLM_2173	CLM_2173		CLM_2173	2230403	2231029	+	flavin reductase	identified by match to protein family HMM PF03358	gene	gene2103	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2173
CLM_2174	CLM_2174		CLM_2174	2231656	2231910	-	Hep_Hag repeat-containing protein		gene	gene2104	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2174
CLM_2175	CLM_2175		CLM_2175	2232541	2233539	+	putative internalin	identified by match to protein family HMM PF00560	gene	gene2105	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2175
CLM_2176	CLM_2176		CLM_2176	2233561	2235609	+	carbohydrate binding protein	identified by match to protein family HMM PF02839%3B match to protein family HMM TIGR03296	gene	gene2106	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2176
CLM_2177	CLM_2177		CLM_2177	2235771	2237861	-	sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF07728	gene	gene2107	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2177
CLM_2178	CLM_2178		CLM_2178	2238230	2238478	-	conserved hypothetical protein		gene	gene2108	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2178
CLM_2179	CLM_2179		CLM_2179	2238491	2238859	-	putative endoribonuclease L-PSP	identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004	gene	gene2109	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2179
CLM_2180	CLM_2180		CLM_2180	2238901	2240196	-	sodium:dicarboxylate symporter family protein	identified by match to protein family HMM PF00375	gene	gene2110	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2180
CLM_2181	CLM_2181		CLM_2181	2240218	2241387	-	aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155	gene	gene2111	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2181
CLM_2182	CLM_2182		CLM_2182	2241701	2242990	+	conserved hypothetical protein	identified by match to protein family HMM PF06354	gene	gene2112	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2182
CLM_2183	CLM_2183		CLM_2183	2243333	2244331	+	putative internalin	identified by match to protein family HMM PF00560	gene	gene2113	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2183
CLM_2184	CLM_2184		CLM_2184	2244352	2246571	+	conserved domain protein	identified by match to protein family HMM TIGR03296	gene	gene2114	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2184
CLM_2185	CLM_2185		CLM_2185	2246772	2248211	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene2115	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2185
CLM_2186	CLM_2186		CLM_2186	2248201	2248866	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2116	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2186
CLM_2187	CLM_2187		CLM_2187	2249310	2250125	-	conserved hypothetical protein	identified by match to protein family HMM PF02596	gene	gene2117	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2187
CLM_2188	CLM_2188		CLM_2188	2250151	2250906	-	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF02361	gene	gene2118	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2188
CLM_2189	CLM_2189		CLM_2189	2250922	2252355	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2119	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2189
CLM_2190	CLM_2190		CLM_2190	2252358	2252924	-	putative ABC transporter%2C permease protein		gene	gene2120	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2190
CLM_2191	CLM_2191		CLM_2191	2253085	2254152	-	alanine racemase%2C N-terminal domain protein	identified by match to protein family HMM PF01168	gene	gene2121	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2191
CLM_2192	CLM_2192		CLM_2192	2254541	2255626	+	spore germination protein	identified by match to protein family HMM PF03845%3B match to protein family HMM TIGR00912	gene	gene2122	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2192
CLM_2193	CLM_2193		CLM_2193	2255709	2257211	+	spore germination protein GerA	identified by match to protein family HMM PF03323	gene	gene2123	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2193
CLM_2194	CLM_2194		CLM_2194	2257201	2258289	+	spore germination protein	identified by match to protein family HMM PF03845%3B match to protein family HMM TIGR00912	gene	gene2124	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2194
CLM_2195	CLM_2195		CLM_2195	2258279	2259391	+	germination protein%2C Ger(x)C family	identified by match to protein family HMM PF05504%3B match to protein family HMM TIGR02887	gene	gene2125	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2195
CLM_2196	CLM_2196		CLM_2196	2259433	2260542	+	spore germination protein	identified by match to protein family HMM PF03845%3B match to protein family HMM TIGR00912	gene	gene2126	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2196
CLM_2197	CLM_2197		CLM_2197	2260570	2260998	-	conserved hypothetical protein	identified by match to protein family HMM PF09719%3B match to protein family HMM TIGR01909	gene	gene2127	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2197
CLM_2198	CLM_2198	pcaC	pcaC	2261293	2261625	+	4-carboxymuconolactone decarboxylase	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene2128	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2198
CLM_2199	CLM_2199		CLM_2199	2261638	2262618	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2129	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2199
CLM_2200	CLM_2200		CLM_2200	2262799	2263554	+	tetratricopeptide repeat family protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene2130	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2200
CLM_2201	CLM_2201		CLM_2201	2263772	2265202	-	transporter%2C CPA2 family	identified by match to protein family HMM PF00999%3B match to protein family HMM PF02080	gene	gene2131	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2201
CLM_2202	CLM_2202	hsp90	hsp90	2265800	2267680	-	heat shock protein	identified by match to protein family HMM PF00183	gene	gene2132	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2202
CLM_2203	CLM_2203		CLM_2203	2268218	2269783	+	MutS domain protein	identified by match to protein family HMM PF00488	gene	gene2133	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2203
CLM_2204	CLM_2204	treP	treP	2270265	2271692	+	PTS system%2C trehalose-specific IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR01992	gene	gene2134	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2204
CLM_2205	CLM_2205	treC	treC	2271774	2273441	+	alpha%2Calpha-phosphotrehalase	identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02403	gene	gene2135	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2205
CLM_2206	CLM_2206	treR	treR	2273474	2274184	+	trehalose operon repressor	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702%3B match to protein family HMM TIGR02404	gene	gene2136	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2206
CLM_2207	CLM_2207		CLM_2207	2274546	2274986	-	PTS system%2C fructose family%2C IIA component	identified by match to protein family HMM PF00359%3B match to protein family HMM TIGR00848	gene	gene2137	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2207
CLM_2208	CLM_2208		CLM_2208	2275259	2276656	-	PTS system%2C fructose family%2C IIBC component	identified by match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR01427	gene	gene2138	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2208
CLM_2209	CLM_2209	pfkB	pfkB	2276657	2277580	-	1-phosphofructokinase	identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR03168	gene	gene2139	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2209
CLM_2210	CLM_2210		CLM_2210	2277600	2278460	-	class II aldolase%2C tagatose bisphosphate family	identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01858	gene	gene2140	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2210
CLM_2211	CLM_2211		CLM_2211	2278660	2279397	-	putative transcriptional regulator	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene2141	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2211
CLM_2212	CLM_2212		CLM_2212	2279479	2279886	-	conserved hypothetical protein	identified by similarity to GB:AAO35217.1	gene	gene2142	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2212
CLM_2213	CLM_2213		CLM_2213	2280248	2280643	+	endoribonuclease L-PSP family protein	identified by match to protein family HMM PF01042	gene	gene2143	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2213
CLM_2214	CLM_2214		CLM_2214	2280983	2281852	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2144	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2214
CLM_2215	CLM_2215		CLM_2215	2282265	2283356	+	glycerol dehydrogenase	identified by match to protein family HMM PF00465%3B match to protein family HMM PF01761	gene	gene2145	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2215
CLM_2216	CLM_2216		CLM_2216	2283604	2283717	-	conserved hypothetical protein		gene	gene2146	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2216
CLM_2217	CLM_2217		CLM_2217	2283848	2285497	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2147	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2217
CLM_2218	CLM_2218		CLM_2218	2285491	2285604	-	conserved hypothetical protein		gene	gene2148	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2218
CLM_2219	CLM_2219		CLM_2219	2285682	2286743	-	alanine racemase%2C N-terminal domain protein	identified by match to protein family HMM PF01168	gene	gene2149	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2219
CLM_2220	CLM_2220		CLM_2220	2287100	2287378	-	conserved hypothetical protein		gene	gene2150	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2220
CLM_2221	CLM_2221		CLM_2221	2287848	2288912	+	oxidoreductase family protein	identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02894	gene	gene2151	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2221
CLM_2222	CLM_2222		CLM_2222	2289034	2289579	-	phosphoribosyl transferase domain protein	identified by match to protein family HMM PF00156	gene	gene2152	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2222
CLM_2223	CLM_2223		CLM_2223	2289595	2290659	-	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860	gene	gene2153	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2223
CLM_2225	CLM_2225		CLM_2225	2291102	2291650	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2154	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2225
CLM_2226	CLM_2226		CLM_2226	2291884	2293188	-	conserved hypothetical protein	identified by match to protein family HMM PF06354	gene	gene2155	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2226
CLM_2227	CLM_2227		CLM_2227	2293448	2295223	-	putative sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728	gene	gene2156	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2227
CLM_2228	CLM_2228		CLM_2228	2295689	2296819	+	ATP-dependent RNA helicase%2C DEAD/DEAH box family	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene2157	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2228
CLM_2229	CLM_2229		CLM_2229	2297139	2297936	+	SCP-like extracellular protein	identified by match to protein family HMM PF00188%3B match to protein family HMM TIGR02909	gene	gene2158	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2229
CLM_2230	CLM_2230		CLM_2230	2298039	2299385	-	transcriptional regulator%2C GntR family/aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene2159	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2230
CLM_2231	CLM_2231		CLM_2231	2299534	2300442	+	putative membrane protein	identified by match to protein family HMM PF00892	gene	gene2160	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2231
CLM_2232	CLM_2232	aspB	aspB	2300741	2301892	-	aspartate aminotransferase	identified by match to protein family HMM PF00155	gene	gene2161	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2232
CLM_2233	CLM_2233		CLM_2233	2301912	2302634	-	polar amino acid uptake family ABC transporter%2C PAAT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2162	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2233
CLM_2234	CLM_2234		CLM_2234	2302621	2303307	-		amino acid ABC transporter%2C permease protein%2C His/Glu/Gln/Arg/opine family%3B this region contains one or more premature stops and/or frameshifts%3B identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	pseudogene	gene2163	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2234
CLM_2235	CLM_2235		CLM_2235	2303454	2304272	-	polar amino acid uptake ABC transporter%2C PAAT family%2C amino acid-binding protein	identified by match to protein family HMM PF00497	gene	gene2164	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2235
CLM_2236	CLM_2236		CLM_2236	2304359	2305639	-	conserved hypothetical protein		gene	gene2165	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2236
CLM_2237	CLM_2237		CLM_2237	2306001	2307140	-	aminotransferase%2C class V	identified by match to protein family HMM PF00266	gene	gene2166	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2237
CLM_2238	CLM_2238	catB	catB	2307253	2307918	-	chloramphenicol acetyltransferase	identified by match to protein family HMM PF00302	gene	gene2167	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2238
CLM_2239	CLM_2239		CLM_2239	2308413	2308625	-	conserved hypothetical protein		gene	gene2168	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2239
CLM_2240	CLM_2240		CLM_2240	2308921	2309142	-	conserved hypothetical protein		gene	gene2169	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2240
CLM_2241	CLM_2241		CLM_2241	2309280	2309528	-	conserved domain protein	identified by similarity to GB:CAG19110.1	gene	gene2170	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2241
CLM_2242	CLM_2242		CLM_2242	2309716	2310432	-	conserved hypothetical protein		gene	gene2171	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2242
CLM_2243	CLM_2243		CLM_2243	2310842	2312197	-	amino acid/peptide transporter	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene2172	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2243
CLM_2244	CLM_2244		CLM_2244	2312537	2313883	-	amino acid/peptide transporter	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene2173	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2244
CLM_2245	CLM_2245	pepQ	pepQ	2314392	2315480	+	Xaa-Pro dipeptidase	identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321	gene	gene2174	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2245
CLM_2246	CLM_2246	pepIP	pepIP	2315562	2316443	+	prolyl aminopeptidase	identified by match to protein family HMM PF00561%3B match to protein family HMM TIGR01250	gene	gene2175	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2246
CLM_2247	CLM_2247		CLM_2247	2316591	2316716	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2176	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2247
CLM_2248	CLM_2248		CLM_2248	2316733	2318226	-	sodium:neurotransmitter symporter family protein	identified by match to protein family HMM PF00209	gene	gene2177	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2248
CLM_2249	CLM_2249		CLM_2249	2318636	2320030	-	transcriptional regulator%2C GntR family/aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene2178	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2249
CLM_2250	CLM_2250		CLM_2250	2320148	2320927	+	phenazine biosynthesis protein%2C PhzF family	identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654	gene	gene2179	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2250
CLM_2251	CLM_2251		CLM_2251	2320947	2321414	+	endoribonuclease family protein	identified by match to protein family HMM PF01042	gene	gene2180	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2251
CLM_2252	CLM_2252		CLM_2252	2321551	2322198	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2181	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2252
CLM_2253	CLM_2253		CLM_2253	2322431	2324908	-	thrombospondin type 3 repeat protein		gene	gene2182	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2253
CLM_2254	CLM_2254		CLM_2254	2325309	2327252	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2183	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2254
CLM_2255	CLM_2255		CLM_2255	2327267	2328502	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2184	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2255
CLM_2256	CLM_2256		CLM_2256	2328499	2330610	-	conserved domain protein		gene	gene2185	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2256
CLM_2257	CLM_2257		CLM_2257	2330732	2332525	-	myosin-cross-reactive antigen family protein	identified by match to protein family HMM PF06100	gene	gene2186	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2257
CLM_2258	CLM_2258		CLM_2258	2332829	2333398	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene2187	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2258
CLM_2259	CLM_2259		CLM_2259	2333560	2334041	-		phage protein Gp37/Gp68%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2188	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2259
CLM_2261	CLM_2261		CLM_2261	2334072	2334257	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2189	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2261
CLM_2262	CLM_2262		CLM_2262	2334384	2334608	+	methyl-accepting chemotaxis protein%2C contain hamp domain	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2190	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2262
CLM_2263	CLM_2263		CLM_2263	2334617	2334772	+	methyl-accepting chemotaxis protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2191	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2263
CLM_2264	CLM_2264		CLM_2264	2334814	2335029	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2192	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2264
CLM_2265	CLM_2265		CLM_2265	2335372	2336091	-	conserved hypothetical protein		gene	gene2193	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2265
CLM_2266	CLM_2266		CLM_2266	2336069	2337076	+	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene2194	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2266
CLM_2267	CLM_2267		CLM_2267	2337536	2338597	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2195	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2267
CLM_2268	CLM_2268		CLM_2268	2338641	2339285	-	bacterial transferase%2C hexapeptide repeat family	identified by match to protein family HMM PF00132%3B match to protein family HMM TIGR03570	gene	gene2196	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2268
CLM_2269	CLM_2269		CLM_2269	2339377	2340516	-	aminotransferase%2C DegT/DnrJ/EryC1/StrS family	identified by match to protein family HMM PF01041	gene	gene2197	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2269
CLM_2270	CLM_2270		CLM_2270	2340562	2341461	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2198	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2270
CLM_2271	CLM_2271		CLM_2271	2341663	2342724	+	glucose-1-phosphate thymidylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01208	gene	gene2199	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2271
CLM_2272	CLM_2272	rfbB	rfbB	2342766	2343746	+	dTDP-glucose 4%2C6-dehydratase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181	gene	gene2200	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2272
CLM_2273	CLM_2273		CLM_2273	2343789	2343977	+	conserved hypothetical protein		gene	gene2201	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2273
CLM_2274	CLM_2274		CLM_2274	2344022	2344315	+	conserved hypothetical protein		gene	gene2202	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2274
CLM_2275	CLM_2275		CLM_2275	2344566	2344859	+	conserved hypothetical protein		gene	gene2203	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2275
CLM_2276	CLM_2276		CLM_2276	2345282	2345419	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene2204	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2276
CLM_2277	CLM_2277		CLM_2277	2345894	2347183	-	triacylglycerol lipase		gene	gene2205	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2277
CLM_2278	CLM_2278		CLM_2278	2348044	2348718	-	vanZF protein	identified by match to protein family HMM PF04892	gene	gene2206	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2278
CLM_2279	CLM_2279		CLM_2279	2348859	2350040	-	macrolide glycosyltransferase	identified by match to protein family HMM PF00201%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01426	gene	gene2207	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2279
CLM_2280	CLM_2280		CLM_2280	2350033	2350338	-	transcriptional regulator%2C AbrB family	identified by match to protein family HMM PF04014%3B match to protein family HMM TIGR01439	gene	gene2208	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2280
CLM_2281	CLM_2281		CLM_2281	2350587	2351384	-	conserved hypothetical protein		gene	gene2209	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2281
CLM_2282	CLM_2282		CLM_2282	2351869	2351991	-	conserved hypothetical protein		gene	gene2210	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2282
CLM_2283	CLM_2283		CLM_2283	2352192	2353196	-	conserved hypothetical protein		gene	gene2211	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2283
CLM_2284	CLM_2284		CLM_2284	2353392	2354516	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2212	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2284
CLM_2285	CLM_2285		CLM_2285	2354530	2354706	-	conserved hypothetical protein		gene	gene2213	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2285
CLM_2286	CLM_2286		CLM_2286	2354853	2354984	-	conserved hypothetical protein		gene	gene2214	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2286
CLM_2287	CLM_2287		CLM_2287	2355217	2355354	-	resolvase domain protein		gene	gene2215	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2287
CLM_2288	CLM_2288		CLM_2288	2355634	2356191	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2216	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2288
CLM_2289	CLM_2289		CLM_2289	2356294	2356998	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF05036	gene	gene2217	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2289
CLM_2290	CLM_2290		CLM_2290	2356991	2357335	-	toxin secretion/phage lysis holin	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF05105%3B match to protein family HMM TIGR01593	gene	gene2218	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2290
CLM_2291	CLM_2291		CLM_2291	2357428	2357928	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2219	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2291
CLM_2292	CLM_2292		CLM_2292	2357936	2358154	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2220	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2292
CLM_2293	CLM_2293		CLM_2293	2358177	2358398	-	conserved domain protein		gene	gene2221	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2293
CLM_2294	CLM_2294		CLM_2294	2358474	2361482	-	type III restriction protein res subunit	identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851	gene	gene2222	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2294
CLM_2295	CLM_2295		CLM_2295	2361485	2362837	-	restriction modification system DNA specificity domain protein		gene	gene2223	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2295
CLM_2296	CLM_2296		CLM_2296	2362830	2364545	-	N-6 DNA methylase	identified by match to protein family HMM PF02384	gene	gene2224	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2296
CLM_2297	CLM_2297		CLM_2297	2364732	2364863	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2225	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2297
CLM_2298	CLM_2298		CLM_2298	2365836	2368376	-	DEAD/DEAH box helicase domain protein	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene2226	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2298
CLM_2299	CLM_2299		CLM_2299	2368394	2369296	-	conserved hypothetical protein		gene	gene2227	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2299
CLM_2300	CLM_2300		CLM_2300	2369740	2370984	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene2228	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2300
CLM_2301	CLM_2301		CLM_2301	2371195	2371824	-	recombinase	identified by match to protein family HMM PF00239	gene	gene2229	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2301
CLM_2302	CLM_2302		CLM_2302	2373060	2374228	-		conserved hypothetical protein%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene2230	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2302
CLM_2304	CLM_2304		CLM_2304	2374676	2375599	-	NAD-dependent epimerase/dehydratase family protein	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene2231	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2304
CLM_2305	CLM_2305		CLM_2305	2375895	2377244	+	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene2232	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2305
CLM_2306	CLM_2306		CLM_2306	2377267	2379888	+	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00534%3B match to protein family HMM PF00535	gene	gene2233	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2306
CLM_2307	CLM_2307		CLM_2307	2380081	2380404	+	transcriptional regulator%2C PadR family	identified by match to protein family HMM PF03551	gene	gene2234	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2307
CLM_2308	CLM_2308		CLM_2308	2380409	2381005	+	conserved hypothetical protein		gene	gene2235	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2308
CLM_2309	CLM_2309		CLM_2309	2381196	2382101	-	transporter%2C AEC family	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF03547	gene	gene2236	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2309
CLM_2310	CLM_2310	tetP	tetP	2382229	2384184	-	tetracycline resistance protein TetP	identified by similarity to SP:Q46306%3B match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231	gene	gene2237	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2310
CLM_2311	CLM_2311		CLM_2311	2384727	2387504	-	viral enhancin protein	identified by match to protein family HMM PF02839%3B match to protein family HMM PF03272	gene	gene2238	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2311
CLM_2312	CLM_2312	cadA	cadA	2387946	2389817	-	cadmium-exporting ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525	gene	gene2239	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2312
CLM_2313	CLM_2313		CLM_2313	2389999	2390274	-	conserved hypothetical protein	identified by match to protein family HMM PF02583	gene	gene2240	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2313
CLM_2314	CLM_2314		CLM_2314	2390397	2390687	-	bacterial microcompartments family protein	identified by match to protein family HMM PF00936	gene	gene2241	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2314
CLM_2315	CLM_2315		CLM_2315	2390761	2391411	-	propanediol utilization protein PduL homolog	identified by match to protein family HMM PF06130	gene	gene2242	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2315
CLM_2316	CLM_2316	eutE	eutE	2391411	2393009	-	acetaldehyde dehydrogenase (acetylating)	identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR02518	gene	gene2243	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2316
CLM_2317	CLM_2317		CLM_2317	2393044	2393841	-	bacterial microcompartments family protein	identified by match to protein family HMM PF00936	gene	gene2244	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2317
CLM_2318	CLM_2318		CLM_2318	2393862	2394524	-	ethanolamine utilization protein EutQ homolog	identified by match to protein family HMM PF05899%3B match to protein family HMM PF06249	gene	gene2245	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2318
CLM_2319	CLM_2319		CLM_2319	2394723	2394986	-	putative polyhedral organelle formation protein	identified by match to protein family HMM PF03319	gene	gene2246	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2319
CLM_2320	CLM_2320		CLM_2320	2394983	2395285	-	conserved hypothetical protein	identified by match to protein family HMM PF00936	gene	gene2247	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2320
CLM_2321	CLM_2321		CLM_2321	2395363	2396208	-	ethanolamine utilization protein EutJ family protein	identified by match to protein family HMM TIGR02529	gene	gene2248	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2321
CLM_2322	CLM_2322		CLM_2322	2396190	2396918	-	conserved hypothetical protein		gene	gene2249	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2322
CLM_2323	CLM_2323		CLM_2323	2396925	2397371	-	GTP-binding protein%2C EutP/PduV family		gene	gene2250	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2323
CLM_2324	CLM_2324		CLM_2324	2397368	2397721	-	ethanolamine utilization protein EutS homolog	identified by match to protein family HMM PF00936	gene	gene2251	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2324
CLM_2325	CLM_2325		CLM_2325	2397761	2398714	-	glycyl-radical enzyme activating family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR02494	gene	gene2252	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2325
CLM_2326	CLM_2326		CLM_2326	2398878	2401418	-	formate acetyltransferase	identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901	gene	gene2253	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2326
CLM_2327	CLM_2327		CLM_2327	2401468	2402961	-	aldehyde dehydrogenase family protein		gene	gene2254	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2327
CLM_2328	CLM_2328		CLM_2328	2402999	2403307	-	bacterial microcompartments family protein	identified by match to protein family HMM PF00936	gene	gene2255	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2328
CLM_2329	CLM_2329		CLM_2329	2403331	2403627	-	bacterial microcompartments family protein	identified by match to protein family HMM PF00936	gene	gene2256	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2329
CLM_2330	CLM_2330		CLM_2330	2403940	2404206	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2257	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2330
CLM_2331	CLM_2331		CLM_2331	2404193	2405305	-	putative membrane protein		gene	gene2258	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2331
CLM_2332	CLM_2332		CLM_2332	2405791	2406621	-	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene2259	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2332
CLM_2333	CLM_2333		CLM_2333	2406725	2407867	-	alcohol dehydrogenase%2C iron-containing	identified by match to protein family HMM PF00465	gene	gene2260	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2333
CLM_2334	CLM_2334		CLM_2334	2408390	2409703	+	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene2261	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2334
CLM_2335	CLM_2335		CLM_2335	2409800	2411044	-	inner membrane transport protein YeaN	identified by match to protein family HMM PF07690	gene	gene2262	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2335
CLM_2336	CLM_2336		CLM_2336	2411085	2411774	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene2263	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2336
CLM_2337	CLM_2337		CLM_2337	2411937	2412836	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF00583%3B match to protein family HMM PF01047	gene	gene2264	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2337
CLM_2339	CLM_2339		CLM_2339	2413176	2413681	-		conserved hypothetical protein%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene2265	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2339
CLM_2340	CLM_2340		CLM_2340	2413709	2413836	-		hypothetical protein%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by glimmer%3B putative	pseudogene	gene2266	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2340
CLM_2341	CLM_2341		CLM_2341	2413827	2414615	-	conserved hypothetical protein	identified by match to protein family HMM PF09234	gene	gene2267	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2341
CLM_2342	CLM_2342		CLM_2342	2415419	2415781	-	conserved hypothetical protein		gene	gene2268	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2342
CLM_2343	CLM_2343		CLM_2343	2415794	2416282	-	DNA binding protein%2C excisionase family	identified by match to protein family HMM TIGR01764	gene	gene2269	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2343
CLM_2344	CLM_2344		CLM_2344	2416561	2417199	-	sortase family protein	identified by match to protein family HMM PF04203%3B match to protein family HMM TIGR01076	gene	gene2270	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2344
CLM_2345	CLM_2345		CLM_2345	2417168	2419897	-	LPXTG-motif cell wall anchor domain protein	identified by match to protein family HMM TIGR01167	gene	gene2271	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2345
CLM_2346	CLM_2346		CLM_2346	2420214	2421233	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene2272	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2346
CLM_2347	CLM_2347		CLM_2347	2421230	2421901	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2273	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2347
CLM_2348	CLM_2348		CLM_2348	2422099	2422809	-	putative membrane protein		gene	gene2274	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2348
CLM_2349	CLM_2349		CLM_2349	2422802	2424958	-	putative membrane protein		gene	gene2275	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2349
CLM_2350	CLM_2350		CLM_2350	2425030	2425905	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2276	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2350
CLM_2351	CLM_2351		CLM_2351	2425965	2427959	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene2277	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2351
CLM_2352	CLM_2352		CLM_2352	2428265	2429350	-	CbrA protein	identified by similarity to SP:P31456	gene	gene2278	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2352
CLM_2353	CLM_2353		CLM_2353	2429343	2429588	-	conserved hypothetical protein		gene	gene2279	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2353
CLM_2354	CLM_2354		CLM_2354	2429604	2430095	-	conserved hypothetical protein		gene	gene2280	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2354
CLM_2355	CLM_2355		CLM_2355	2430547	2431587	-	oxidoreductase%2C zinc-binding dehydrogenase family	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene2281	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2355
CLM_2356	CLM_2356		CLM_2356	2431654	2432511	-	AP endonuclease%2C family 2	identified by match to protein family HMM PF01261	gene	gene2282	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2356
CLM_2357	CLM_2357		CLM_2357	2432595	2433734	-	putative 3-dehydroquinate synthase	identified by match to protein family HMM PF01761	gene	gene2283	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2357
CLM_2358	CLM_2358		CLM_2358	2434300	2436291	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF02687	gene	gene2284	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2358
CLM_2359	CLM_2359		CLM_2359	2436281	2437048	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2285	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2359
CLM_2360	CLM_2360		CLM_2360	2437826	2438179	-	conserved hypothetical protein		gene	gene2286	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2360
CLM_2361	CLM_2361		CLM_2361	2438505	2440598	-	putative PRD domain protein/PTS system%2C L-ascorbate family%2C IIA component	identified by match to protein family HMM PF00359%3B match to protein family HMM PF00874%3B match to protein family HMM PF05043%3B match to protein family HMM PF08279	gene	gene2287	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2361
CLM_2362	CLM_2362		CLM_2362	2440810	2442174	-	putative PTS system%2C L-ascorbate family%2C IIC component	identified by match to protein family HMM PF04215	gene	gene2288	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2362
CLM_2363	CLM_2363		CLM_2363	2442187	2442471	-	putative PTS system%2C L-Ascorbate family%2C IIB component	identified by match to protein family HMM PF02302	gene	gene2289	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2363
CLM_2364	CLM_2364		CLM_2364	2442500	2442937	-	putative PTS system%2C L-ascorbate family%2C IIA component	identified by match to protein family HMM PF00359	gene	gene2290	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2364
CLM_2365	CLM_2365		CLM_2365	2442961	2443677	-	transaldolase	identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR02134	gene	gene2291	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2365
CLM_2366	CLM_2366		CLM_2366	2443912	2444316	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2292	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2366
CLM_2367	CLM_2367		CLM_2367	2444581	2445315	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2293	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2367
CLM_2368	CLM_2368		CLM_2368	2445618	2445803	-	conserved hypothetical protein		gene	gene2294	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2368
CLM_2369	CLM_2369		CLM_2369	2445920	2446534	-	O-acetyltransferase family protein	identified by match to protein family HMM PF00132	gene	gene2295	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2369
CLM_2370	CLM_2370		CLM_2370	2446845	2447198	+		metallopeptidase%2C family M24%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2296	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2370
CLM_2372	CLM_2372		CLM_2372	2447529	2448935	+	amino acid/peptide transporter	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene2297	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2372
CLM_2373	CLM_2373		CLM_2373	2449039	2449779	-	conserved hypothetical protein	identified by match to protein family HMM PF08242	gene	gene2298	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2373
CLM_2374	CLM_2374		CLM_2374	2449786	2450676	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene2299	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2374
CLM_2375	CLM_2375		CLM_2375	2450977	2451498	+	conserved hypothetical protein		gene	gene2300	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2375
CLM_2376	CLM_2376	enr	enr	2451609	2453606	-	2-enoate reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF00724%3B match to protein family HMM PF07992	gene	gene2301	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2376
CLM_2377	CLM_2377		CLM_2377	2453703	2454500	-	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene2302	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2377
CLM_2378	CLM_2378		CLM_2378	2454549	2454842	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2303	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2378
CLM_2379	CLM_2379		CLM_2379	2454996	2455187	-	conserved hypothetical protein		gene	gene2304	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2379
CLM_2380	CLM_2380		CLM_2380	2455225	2455546	-		CRISPR-associated protein Cas6%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2305	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2380
CLM_2382	CLM_2382		CLM_2382	2456642	2457577	-	phenazine biosynthesis protein%2C PhzF family	identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654	gene	gene2306	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2382
CLM_2383	CLM_2383		CLM_2383	2457902	2459395	+	transcriptional regulator%2C GntR family/aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene2307	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2383
CLM_2384	CLM_2384		CLM_2384	2460445	2460897	+	conserved domain protein		gene	gene2308	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2384
CLM_2385	CLM_2385		CLM_2385	2460979	2461425	-	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2309	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2385
CLM_2386	CLM_2386		CLM_2386	2461593	2462624	-	putative lipase/esterase	identified by match to protein family HMM PF07859	gene	gene2310	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2386
CLM_2387	CLM_2387		CLM_2387	2462890	2464242	-	amidohydrolase family protein	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969	gene	gene2311	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2387
CLM_2388	CLM_2388		CLM_2388	2464318	2465661	-	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR03173	gene	gene2312	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2388
CLM_2390	CLM_2390		CLM_2390	2466099	2466998	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2313	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2390
CLM_2391	CLM_2391		CLM_2391	2467338	2468660	+	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene2314	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2391
CLM_2392	CLM_2392		CLM_2392	2468728	2469462	-	protein kinase domain protein		gene	gene2315	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2392
CLM_2393	CLM_2393	hgdC_1	hgdC_1	2469949	2470722	-	2-hydroxyglutaryl-CoA dehydratase component A	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene2316	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2393
CLM_2394	CLM_2394		CLM_2394	2470799	2472499	-	putative membrane protein		gene	gene2317	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2394
CLM_2395	CLM_2395		CLM_2395	2472800	2473849	-	electron transfer flavoprotein%2C alpha subunit/FixB family protein	identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene2318	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2395
CLM_2396	CLM_2396		CLM_2396	2473868	2474653	-	electron transfer flavoprotein%2C beta subunit/FixA family protein	identified by match to protein family HMM PF01012	gene	gene2319	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2396
CLM_2397	CLM_2397		CLM_2397	2474690	2475823	-	acyl-CoA dehydrogenase family protein	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene2320	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2397
CLM_2398	CLM_2398	hgdB	hgdB	2476322	2477449	-	(R)-2-hydroxyglutaryl-CoA dehydratase%2C beta subunit	identified by similarity to SP:P11570%3B match to protein family HMM PF06050	gene	gene2321	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2398
CLM_2399	CLM_2399		CLM_2399	2477449	2478681	-	(R)-2-hydroxyglutaryl-CoA dehydratase%2C alpha subunit family	identified by similarity to SP:P11569%3B match to protein family HMM PF06050	gene	gene2322	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2399
CLM_2400	CLM_2400	hadA	hadA	2478744	2479958	-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)	identified by similarity to GB:AAV40822.1%3B match to protein family HMM PF02515	gene	gene2323	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2400
CLM_2401	CLM_2401		CLM_2401	2480699	2481520	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene2324	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2401
CLM_2402	CLM_2402		CLM_2402	2481921	2483192	+	2-hydroxyglutaryl-CoA dehydratase%2C D-component	identified by match to protein family HMM PF06050	gene	gene2325	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2402
CLM_2403	CLM_2403	bcrA	bcrA	2483195	2484886	+	benzoyl-CoA reductase%2C subunit A	identified by match to protein family HMM PF01869%3B match to protein family HMM PF06050%3B match to protein family HMM TIGR00241	gene	gene2326	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2403
CLM_2404	CLM_2404		CLM_2404	2485185	2486336	-	putative methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene2327	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2404
CLM_2405	CLM_2405		CLM_2405	2486920	2487519	-	conserved hypothetical protein		gene	gene2328	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2405
CLM_2406	CLM_2406		CLM_2406	2487936	2488529	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2329	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2406
CLM_2407	CLM_2407	fosX	fosX	2488878	2489291	+	fosfomycin resistance protein FosX	identified by similarity to SP:Q8Y6I2%3B match to protein family HMM PF00903	gene	gene2330	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2407
CLM_2408	CLM_2408	gntP	gntP	2489455	2490843	-	gluconate permease	identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00791	gene	gene2331	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2408
CLM_2409	CLM_2409	pdxA	pdxA	2491070	2492074	-	4-hydroxythreonine-4-phosphate dehydrogenase	identified by match to protein family HMM PF04166%3B match to protein family HMM TIGR00557	gene	gene2332	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2409
CLM_2410	CLM_2410		CLM_2410	2492087	2493424	-	conserved hypothetical protein		gene	gene2333	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2410
CLM_2411	CLM_2411		CLM_2411	2493489	2494247	-	transcriptional regulator%2C DeoR family	identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220%3B match to protein family HMM PF08279	gene	gene2334	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2411
CLM_2412	CLM_2412		CLM_2412	2494782	2494949	+	conserved hypothetical protein		gene	gene2335	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2412
CLM_2413	CLM_2413		CLM_2413	2495191	2496084	-	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene2336	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2413
CLM_2414	CLM_2414		CLM_2414	2496499	2497884	+	ErfK/YbiS/YcfS/YnhG family protein	identified by match to protein family HMM PF03734	gene	gene2337	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2414
CLM_2415	CLM_2415		CLM_2415	2498329	2498922	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene2338	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2415
CLM_2416	CLM_2416		CLM_2416	2499066	2499593	+	conserved hypothetical protein		gene	gene2339	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2416
CLM_2417	CLM_2417		CLM_2417	2499735	2500388	+		conserved hypothetical protein%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:CAJ70108.1	pseudogene	gene2340	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2417
CLM_2419	CLM_2419		CLM_2419	2500654	2503116	+	conserved domain protein		gene	gene2341	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2419
CLM_2420	CLM_2420		CLM_2420	2503187	2504260	-	oxidoreductase%2C zinc-binding dehydrogenase family	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene2342	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2420
CLM_2421	CLM_2421		CLM_2421	2504709	2506673	-	carbon monoxide dehydrogenase	identified by match to protein family HMM PF03063%3B match to protein family HMM TIGR01702	gene	gene2343	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2421
CLM_2422	CLM_2422		CLM_2422	2506860	2506979	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2344	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2422
CLM_2423	CLM_2423		CLM_2423	2507119	2507268	-	conserved hypothetical protein		gene	gene2345	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2423
CLM_2424	CLM_2424	hypA	hypA	2507467	2507808	+	hydrogenase nickel insertion protein HypA	identified by match to protein family HMM PF01155	gene	gene2346	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2424
CLM_2425	CLM_2425	hypB	hypB	2507811	2508449	+	hydrogenase accessory protein HypB	identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00073	gene	gene2347	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2425
CLM_2426	CLM_2426		CLM_2426	2508472	2508828	-	dinitrogenase iron-molybdenum cofactor family protein	identified by match to protein family HMM PF02579	gene	gene2348	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2426
CLM_2427	CLM_2427		CLM_2427	2508924	2509769	-	CobQ/CobB/MinD/ParA family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01656	gene	gene2349	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2427
CLM_2428	CLM_2428		CLM_2428	2509760	2510590	-	CobQ/CobB/MinD/ParA family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01656	gene	gene2350	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2428
CLM_2429	CLM_2429		CLM_2429	2510615	2510974	-	dinitrogenase iron-molybdenum cofactor family protein	identified by match to protein family HMM PF02579	gene	gene2351	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2429
CLM_2430	CLM_2430		CLM_2430	2511549	2511926	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2352	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2430
CLM_2431	CLM_2431	motB	motB	2512221	2512985	-	chemotaxis MotB protein	identified by match to protein family HMM PF00691	gene	gene2353	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2431
CLM_2432	CLM_2432	motA	motA	2513003	2513788	-	chemotaxis protein MotA	identified by match to protein family HMM PF01618	gene	gene2354	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2432
CLM_2433	CLM_2433		CLM_2433	2513817	2513936	+	conserved hypothetical protein		gene	gene2355	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2433
CLM_2434	CLM_2434		CLM_2434	2514477	2516093	-	amidase domain protein	identified by match to protein family HMM PF04122	gene	gene2356	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2434
CLM_2435	CLM_2435		CLM_2435	2516403	2517026	-	conserved hypothetical protein		gene	gene2357	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2435
CLM_2436	CLM_2436		CLM_2436	2517306	2517647	-	conserved hypothetical protein		gene	gene2358	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2436
CLM_2437	CLM_2437		CLM_2437	2517653	2519608	-	oligopeptide transporter%2C OPT family	identified by match to protein family HMM PF03169%3B match to protein family HMM TIGR00728%3B match to protein family HMM TIGR00733	gene	gene2359	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2437
CLM_2438	CLM_2438	pepD	pepD	2519726	2521171	-	aminoacyl-histidine dipeptidase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01893	gene	gene2360	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2438
CLM_2439	CLM_2439		CLM_2439	2521731	2522759	-	putative low specificity L-threonine aldolase	identified by match to protein family HMM PF01212	gene	gene2361	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2439
CLM_2440	CLM_2440	glxK	glxK	2523598	2524740	-	glycerate kinase	identified by match to protein family HMM PF02595%3B match to protein family HMM TIGR00045	gene	gene2363	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2440
CLM_2441	CLM_2441		CLM_2441	2523467	2523601	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2362	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2441
CLM_2442	CLM_2442		CLM_2442	2524960	2525091	-	conserved hypothetical protein		gene	gene2364	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2442
CLM_2443	CLM_2443		CLM_2443	2525379	2526176	+	oxidoreductase%2C short chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene2365	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2443
CLM_2444	CLM_2444		CLM_2444	2526441	2527619	-	putative sodium extrusion protein NatB		gene	gene2366	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2444
CLM_2445	CLM_2445		CLM_2445	2527633	2528352	-	putative sodium extrusion ATP-binding protein NatA	identified by match to protein family HMM PF00005	gene	gene2367	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2445
CLM_2446	CLM_2446		CLM_2446	2528817	2529272	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2368	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2446
CLM_2447	CLM_2447		CLM_2447	2529286	2529750	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene2369	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2447
CLM_2448	CLM_2448		CLM_2448	2530157	2530291	+	conserved hypothetical protein		gene	gene2370	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2448
CLM_2449	CLM_2449		CLM_2449	2530498	2530902	-	conserved hypothetical protein		gene	gene2371	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2449
CLM_2450	CLM_2450		CLM_2450	2530999	2532069	-	uroporphyrinogen decarboxylase family protein	identified by match to protein family HMM PF01208	gene	gene2372	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2450
CLM_2451	CLM_2451		CLM_2451	2532418	2533866	-	oxidoreductase%2C FAD/[2Fe-2S]-binding	identified by match to protein family HMM PF01266%3B match to protein family HMM PF04324	gene	gene2373	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2451
CLM_2452	CLM_2452		CLM_2452	2534213	2535031	+	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376%3B match to protein family HMM PF06445	gene	gene2374	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2452
CLM_2453	CLM_2453		CLM_2453	2535240	2536643	-	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene2375	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2453
CLM_2454	CLM_2454		CLM_2454	2537079	2537621	-	putative phosphatase	identified by match to protein family HMM PF01661	gene	gene2376	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2454
CLM_2455	CLM_2455		CLM_2455	2538002	2538307	-	conserved hypothetical protein	identified by match to protein family HMM PF06961	gene	gene2377	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2455
CLM_2456	CLM_2456		CLM_2456	2538618	2538743	+	conserved hypothetical protein		gene	gene2378	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2456
CLM_2457	CLM_2457		CLM_2457	2538762	2539193	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene2379	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2457
CLM_2458	CLM_2458		CLM_2458	2539196	2539588	+	conserved hypothetical protein		gene	gene2380	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2458
CLM_2459	CLM_2459		CLM_2459	2539687	2539821	-	conserved hypothetical protein		gene	gene2381	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2459
CLM_2460	CLM_2460	thiM	thiM	2540010	2540807	-	hydroxyethylthiazole kinase	identified by match to protein family HMM PF02110	gene	gene2382	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2460
CLM_2461	CLM_2461	thiW	thiW	2540785	2541354	-	thiW protein	identified by match to protein family HMM TIGR02359	gene	gene2383	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2461
CLM_2462	CLM_2462		CLM_2462	2541533	2541634	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2384	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2462
CLM_2464	CLM_2464		CLM_2464	2541797	2542234	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2385	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2464
CLM_2465	CLM_2465		CLM_2465	2542362	2543090	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene2386	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2465
CLM_2466	CLM_2466		CLM_2466	2543275	2543547	-	conserved hypothetical protein		gene	gene2387	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2466
CLM_2467	CLM_2467	bioD	bioD	2543832	2544515	-	dethiobiotin synthase	identified by match to protein family HMM TIGR00347	gene	gene2388	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2467
CLM_2468	CLM_2468	bioB	bioB	2544518	2545474	-	biotin synthase	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433	gene	gene2389	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2468
CLM_2469	CLM_2469		CLM_2469	2545467	2546027	-	BioY family protein	identified by match to protein family HMM PF02632	gene	gene2390	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2469
CLM_2470	CLM_2470		CLM_2470	2546164	2546316	-	putative membrane protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2391	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2470
CLM_2471	CLM_2471		CLM_2471	2546375	2546971	-	conserved hypothetical protein		gene	gene2392	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2471
CLM_2472	CLM_2472		CLM_2472	2547149	2548942	+	metallopeptidase%2C family M24	identified by match to protein family HMM PF00557%3B match to protein family HMM PF01321	gene	gene2393	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2472
CLM_2473	CLM_2473		CLM_2473	2548973	2550370	+	amino acid/peptide transporter	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene2394	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2473
CLM_2474	CLM_2474		CLM_2474	2550626	2550745	-	conserved hypothetical protein		gene	gene2395	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2474
CLM_2475	CLM_2475		CLM_2475	2550924	2551172	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2396	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2475
CLM_2476	CLM_2476		CLM_2476	2551435	2551704	-	conserved hypothetical protein		gene	gene2397	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2476
CLM_2477	CLM_2477		CLM_2477	2552007	2552423	-	conserved hypothetical protein	identified by match to protein family HMM PF07485	gene	gene2398	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2477
CLM_2478	CLM_2478		CLM_2478	2552926	2553075	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2399	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2478
CLM_2479	CLM_2479		CLM_2479	2553240	2554241	-	choloylglycine hydrolase family protein	identified by match to protein family HMM PF02275%3B match to protein family HMM PF03417	gene	gene2400	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2479
CLM_2480	CLM_2480		CLM_2480	2554439	2555020	-	conserved hypothetical protein	identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358	gene	gene2401	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2480
CLM_2481	CLM_2481		CLM_2481	2555449	2555646	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2402	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2481
CLM_2482	CLM_2482		CLM_2482	2555825	2555953	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene2403	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2482
CLM_2483	CLM_2483		CLM_2483	2556006	2556209	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2404	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2483
CLM_2484	CLM_2484		CLM_2484	2556520	2556642	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2405	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2484
CLM_2485	CLM_2485		CLM_2485	2557022	2557210	+	conserved hypothetical protein		gene	gene2406	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2485
CLM_2486	CLM_2486		CLM_2486	2557852	2558202	+	transcriptional regulator%2C XRE family	identified by match to protein family HMM PF01381	gene	gene2407	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2486
CLM_2487	CLM_2487		CLM_2487	2558210	2560321	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop	gene	gene2408	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2487
CLM_2488	CLM_2488		CLM_2488	2560331	2560540	-	conserved hypothetical protein		gene	gene2409	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2488
CLM_2489	CLM_2489		CLM_2489	2560546	2560782	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2410	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2489
CLM_2490	CLM_2490		CLM_2490	2560795	2561199	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2411	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2490
CLM_2491	CLM_2491		CLM_2491	2561226	2561339	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2412	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2491
CLM_2492	CLM_2492		CLM_2492	2561559	2561726	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2413	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2492
CLM_2493	CLM_2493		CLM_2493	2561916	2562239	-	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2414	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2493
CLM_2494	CLM_2494		CLM_2494	2562527	2563075	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2415	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2494
CLM_2495	CLM_2495		CLM_2495	2564259	2564489	-	conserved domain protein		gene	gene2416	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2495
CLM_2496	CLM_2496		CLM_2496	2564847	2565212	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2417	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2496
CLM_2497	CLM_2497		CLM_2497	2565407	2566396	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2418	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2497
CLM_2498	CLM_2498		CLM_2498	2566644	2567405	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF08239	gene	gene2419	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2498
CLM_2500	CLM_2500		CLM_2500	2567443	2567637	-	conserved hypothetical protein		gene	gene2420	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2500
CLM_2501	CLM_2501		CLM_2501	2567654	2567908	-	conserved hypothetical protein		gene	gene2421	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2501
CLM_2502	CLM_2502		CLM_2502	2568015	2568176	-	conserved hypothetical protein		gene	gene2422	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2502
CLM_2503	CLM_2503		CLM_2503	2568176	2568472	-	conserved hypothetical protein		gene	gene2423	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2503
CLM_2504	CLM_2504		CLM_2504	2568488	2569654	-	tail fiber protein		gene	gene2424	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2504
CLM_2505	CLM_2505		CLM_2505	2569657	2570292	-	conserved hypothetical protein		gene	gene2425	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2505
CLM_2506	CLM_2506		CLM_2506	2570289	2571419	-	putative baseplate J-like protein	identified by match to protein family HMM PF04865	gene	gene2426	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2506
CLM_2507	CLM_2507		CLM_2507	2571425	2571877	-	conserved hypothetical protein		gene	gene2427	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2507
CLM_2508	CLM_2508		CLM_2508	2571870	2572202	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2428	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2508
CLM_2509	CLM_2509		CLM_2509	2572186	2573154	-	conserved hypothetical protein		gene	gene2429	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2509
CLM_2510	CLM_2510		CLM_2510	2573154	2573843	-	conserved hypothetical protein		gene	gene2430	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2510
CLM_2511	CLM_2511		CLM_2511	2573874	2574386	-	puattive membrane protein		gene	gene2431	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2511
CLM_2512	CLM_2512		CLM_2512	2574440	2577418	-	phage tail tape measure protein%2C TP901 family	identified by match to protein family HMM TIGR01760	gene	gene2432	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2512
CLM_2513	CLM_2513		CLM_2513	2577419	2577565	-	conserved hypothetical protein		gene	gene2433	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2513
CLM_2514	CLM_2514		CLM_2514	2577601	2578035	-	conserved hypothetical protein	identified by match to protein family HMM PF08890	gene	gene2434	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2514
CLM_2515	CLM_2515		CLM_2515	2578059	2578469	-	conserved hypothetical protein	identified by match to protein family HMM PF09393	gene	gene2435	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2515
CLM_2516	CLM_2516		CLM_2516	2578482	2579888	-	putative tail sheath protein		gene	gene2436	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2516
CLM_2517	CLM_2517		CLM_2517	2579888	2580079	-	conserved hypothetical protein		gene	gene2437	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2517
CLM_2518	CLM_2518		CLM_2518	2580090	2580911	-	conserved hypothetical protein		gene	gene2438	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2518
CLM_2519	CLM_2519		CLM_2519	2580914	2581321	-	conserved hypothetical protein		gene	gene2439	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2519
CLM_2520	CLM_2520		CLM_2520	2581323	2581709	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2440	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2520
CLM_2521	CLM_2521		CLM_2521	2581710	2582030	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2441	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2521
CLM_2522	CLM_2522		CLM_2522	2582033	2582224	-	conserved hypothetical protein		gene	gene2442	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2522
CLM_2523	CLM_2523		CLM_2523	2582281	2583333	-	conserved hypothetical protein		gene	gene2443	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2523
CLM_2524	CLM_2524		CLM_2524	2583347	2583739	-	conserved hypothetical protein		gene	gene2444	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2524
CLM_2525	CLM_2525		CLM_2525	2583760	2584374	-	phage scaffold protein		gene	gene2445	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2525
CLM_2526	CLM_2526		CLM_2526	2584441	2584584	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2446	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2526
CLM_2527	CLM_2527		CLM_2527	2584590	2586248	-	conserved hypothetical protein		gene	gene2447	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2527
CLM_2528	CLM_2528		CLM_2528	2586248	2587774	-	conserved hypothetical protein		gene	gene2448	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2528
CLM_2529	CLM_2529		CLM_2529	2587774	2589129	-	phage terminase%2C large subunit%2C pbsx family	identified by match to protein family HMM PF04466%3B match to protein family HMM PF07570%3B match to protein family HMM TIGR01547	gene	gene2449	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2529
CLM_2530	CLM_2530		CLM_2530	2589129	2589836	-	phage protein		gene	gene2450	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2530
CLM_2531	CLM_2531		CLM_2531	2589932	2590171	-	peptidase domain protein	identified by match to protein family HMM PF03413	gene	gene2451	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2531
CLM_2532	CLM_2532		CLM_2532	2590287	2590505	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2452	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2532
CLM_2533	CLM_2533		CLM_2533	2590597	2591832	-	Ig group 2 domain protein	identified by match to protein family HMM PF02368	gene	gene2453	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2533
CLM_2534	CLM_2534		CLM_2534	2592246	2592683	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2454	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2534
CLM_2535	CLM_2535		CLM_2535	2592694	2592927	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2455	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2535
CLM_2536	CLM_2536		CLM_2536	2592929	2593522	-	phage protein	identified by match to protein family HMM PF09643	gene	gene2456	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2536
CLM_2537	CLM_2537		CLM_2537	2593611	2593838	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2457	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2537
CLM_2538	CLM_2538		CLM_2538	2593859	2594686	-	D12 class N6 adenine-specific DNA methyltransferase superfamily	identified by match to protein family HMM PF02086	gene	gene2458	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2538
CLM_2539	CLM_2539		CLM_2539	2594701	2594916	-	conserved domain protein		gene	gene2459	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2539
CLM_2540	CLM_2540		CLM_2540	2594933	2595928	-	site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899	gene	gene2460	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2540
CLM_2541	CLM_2541		CLM_2541	2596000	2596167	-	conserved domain protein		gene	gene2461	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2541
CLM_2542	CLM_2542		CLM_2542	2596262	2596408	-	conserved hypothetical protein		gene	gene2462	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2542
CLM_2543	CLM_2543		CLM_2543	2596442	2596612	-	conserved hypothetical protein		gene	gene2463	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2543
CLM_2544	CLM_2544		CLM_2544	2596645	2597034	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2464	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2544
CLM_2545	CLM_2545		CLM_2545	2597168	2597350	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2465	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2545
CLM_2546	CLM_2546		CLM_2546	2597411	2597716	-	conserved hypothetical protein		gene	gene2466	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2546
CLM_2547	CLM_2547		CLM_2547	2597750	2597902	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2467	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2547
CLM_2548	CLM_2548		CLM_2548	2597934	2598122	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2468	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2548
CLM_2549	CLM_2549		CLM_2549	2598168	2598341	-	conserved domain protein		gene	gene2469	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2549
CLM_2550	CLM_2550		CLM_2550	2598393	2598611	-	conserved hypothetical protein		gene	gene2470	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2550
CLM_2551	CLM_2551		CLM_2551	2598635	2598982	-	conserved hypothetical protein		gene	gene2471	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2551
CLM_2552	CLM_2552		CLM_2552	2598985	2599389	-	conserved hypothetical protein	identified by match to protein family HMM PF06356	gene	gene2472	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2552
CLM_2553	CLM_2553		CLM_2553	2599386	2599550	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2473	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2553
CLM_2554	CLM_2554		CLM_2554	2599540	2599905	-	phage protein		gene	gene2474	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2554
CLM_2555	CLM_2555		CLM_2555	2599982	2600695	-	conserved hypothetical protein		gene	gene2475	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2555
CLM_2556	CLM_2556		CLM_2556	2600722	2601114	-	replication terminator protein%2C phage associated		gene	gene2476	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2556
CLM_2557	CLM_2557		CLM_2557	2601212	2601592	-	MazG nucleotide pyrophosphohydrolase domain protein	identified by match to protein family HMM PF03819	gene	gene2477	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2557
CLM_2558	CLM_2558		CLM_2558	2601592	2601831	-	transcriptional regulator%2C AbrB family	identified by match to protein family HMM PF04014%3B match to protein family HMM TIGR01439	gene	gene2478	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2558
CLM_2559	CLM_2559		CLM_2559	2601834	2602154	-	conserved hypothetical protein		gene	gene2479	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2559
CLM_2560	CLM_2560		CLM_2560	2602156	2603034	-	phage protein	identified by match to protein family HMM PF00249	gene	gene2480	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2560
CLM_2561	CLM_2561		CLM_2561	2603046	2603285	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2481	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2561
CLM_2562	CLM_2562		CLM_2562	2603302	2604105	-	putative DNA replication protein DnaC		gene	gene2482	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2562
CLM_2563	CLM_2563		CLM_2563	2604065	2604937	-	putative phage replisome organizer	identified by match to protein family HMM PF09681%3B match to protein family HMM TIGR01714	gene	gene2483	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2563
CLM_2564	CLM_2564		CLM_2564	2604960	2605259	-	conserved domain protein		gene	gene2484	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2564
CLM_2565	CLM_2565		CLM_2565	2605353	2605529	-	conserved hypothetical protein		gene	gene2485	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2565
CLM_2566	CLM_2566		CLM_2566	2605545	2605691	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2486	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2566
CLM_2567	CLM_2567		CLM_2567	2605694	2606554	-	conserved hypothetical protein		gene	gene2487	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2567
CLM_2568	CLM_2568		CLM_2568	2606566	2607051	-	conserved hypothetical protein	identified by match to protein family HMM PF05565	gene	gene2488	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2568
CLM_2569	CLM_2569		CLM_2569	2607183	2607347	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2489	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2569
CLM_2570	CLM_2570		CLM_2570	2607356	2607514	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2490	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2570
CLM_2571	CLM_2571		CLM_2571	2607567	2607719	-	conserved hypothetical protein		gene	gene2491	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2571
CLM_2572	CLM_2572		CLM_2572	2607740	2607949	-	conserved hypothetical protein		gene	gene2492	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2572
CLM_2573	CLM_2573		CLM_2573	2607961	2608749	-	phage antirepressor protein	identified by match to protein family HMM PF03374%3B match to protein family HMM PF08346	gene	gene2493	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2573
CLM_2574	CLM_2574		CLM_2574	2608803	2609024	-	conserved domain protein	identified by match to protein family HMM PF01381	gene	gene2494	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2574
CLM_2575	CLM_2575		CLM_2575	2609157	2609615	+	immunity repressor protein	identified by match to protein family HMM PF01381	gene	gene2495	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2575
CLM_2576	CLM_2576		CLM_2576	2609662	2610096	+	conserved hypothetical protein	identified by match to protein family HMM PF06114	gene	gene2496	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2576
CLM_2577	CLM_2577		CLM_2577	2610239	2611600	+	phage protein		gene	gene2497	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2577
CLM_2578	CLM_2578		CLM_2578	2611695	2613317	+	resolvase	identified by match to protein family HMM PF00239%3B match to protein family HMM PF07508	gene	gene2498	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2578
CLM_2579	CLM_2579		CLM_2579	2613606	2614307	+	oxidoreductase family protein		gene	gene2499	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2579
CLM_2580	CLM_2580		CLM_2580	2614402	2614569	-	conserved hypothetical protein		gene	gene2500	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2580
CLM_2581	CLM_2581		CLM_2581	2614870	2615277	-	conserved hypothetical protein		gene	gene2501	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2581
CLM_2582	CLM_2582		CLM_2582	2615358	2615951	-	putative lipoprotein		gene	gene2502	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2582
CLM_2583	CLM_2583	msrB	msrB	2616125	2616574	-	methionine-R-sulfoxide reductase	identified by match to protein family HMM PF01641%3B match to protein family HMM TIGR00357	gene	gene2503	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2583
CLM_2584	CLM_2584	sodF	sodF	2616806	2617402	-	Mn/Fe superoxide dismutase	identified by match to protein family HMM PF00081%3B match to protein family HMM PF02777	gene	gene2504	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2584
CLM_2585	CLM_2585		CLM_2585	2617514	2619259	-	putative ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005	gene	gene2505	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2585
CLM_2586	CLM_2586		CLM_2586	2619252	2621051	-	putative ABC transporter%2C ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2506	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2586
CLM_2587	CLM_2587		CLM_2587	2621331	2622290	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene2507	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2587
CLM_2588	CLM_2588		CLM_2588	2622537	2622650	-	conserved hypothetical protein		gene	gene2508	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2588
CLM_2589	CLM_2589		CLM_2589	2622797	2623531	-	putative membrane protein		gene	gene2509	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2589
CLM_2590	CLM_2590		CLM_2590	2623567	2624313	-	putative membrane protein		gene	gene2510	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2590
CLM_2591	CLM_2591		CLM_2591	2624306	2625226	-	antibiotic ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2511	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2591
CLM_2592	CLM_2592		CLM_2592	2625428	2626339	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene2512	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2592
CLM_2593	CLM_2593		CLM_2593	2626336	2627043	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2513	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2593
CLM_2594	CLM_2594		CLM_2594	2627398	2628159	+	exonuclease family protein	identified by match to protein family HMM PF00929	gene	gene2514	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2594
CLM_2595	CLM_2595		CLM_2595	2628193	2628495	-	stress responsive A/B barrel domain protein	identified by match to protein family HMM PF07876	gene	gene2515	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2595
CLM_2596	CLM_2596		CLM_2596	2628578	2629414	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene2516	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2596
CLM_2597	CLM_2597	def	def	2629717	2630169	-	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene2517	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2597
CLM_2598	CLM_2598		CLM_2598	2630170	2630406	-	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2518	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2598
CLM_2599	CLM_2599	tgl	tgl	2630647	2631468	-	protein-glutamine gamma-glutamyltransferase		gene	gene2519	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2599
CLM_2600	CLM_2600		CLM_2600	2631465	2632460	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2520	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2600
CLM_2601	CLM_2601		CLM_2601	2632809	2632922	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2521	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2601
CLM_2602	CLM_2602		CLM_2602	2633537	2633689	-	O-methyltransferase domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2522	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2602
CLM_2603	CLM_2603		CLM_2603	2634160	2634756	-	conserved hypothetical protein		gene	gene2523	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2603
CLM_2604	CLM_2604		CLM_2604	2634972	2635097	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2524	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2604
CLM_2605	CLM_2605		CLM_2605	2635433	2636806	+	putative membrane protein	identified by match to protein family HMM PF02366	gene	gene2525	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2605
CLM_2606	CLM_2606		CLM_2606	2637008	2637313	-	conserved hypothetical protein		gene	gene2526	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2606
CLM_2607	CLM_2607		CLM_2607	2637306	2637830	-	conserved hypothetical protein		gene	gene2527	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2607
CLM_2608	CLM_2608		CLM_2608	2637811	2638263	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2528	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2608
CLM_2609	CLM_2609		CLM_2609	2638260	2638772	-	RNA polymerase sigma-70 factor%2C ECF family	identified by match to protein family HMM PF04542%3B match to protein family HMM TIGR02937	gene	gene2529	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2609
CLM_2610	CLM_2610		CLM_2610	2639225	2640331	-	spore germination protein	identified by match to protein family HMM PF03845%3B match to protein family HMM TIGR00912	gene	gene2530	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2610
CLM_2611	CLM_2611		CLM_2611	2640943	2641302	-	LuxR family transcriptional regulator		gene	gene2531	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2611
CLM_2612	CLM_2612		CLM_2612	2641373	2641855	-	conserved hypothetical protein		gene	gene2532	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2612
CLM_2613	CLM_2613		CLM_2613	2642061	2642137	-			gene	gene2533	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2613
CLM_2614	CLM_2614		CLM_2614	2642151	2643972	-		RNA-directed DNA polymerase%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF00078%3B match to protein family HMM PF01844%3B match to protein family HMM PF08388	pseudogene	gene2534	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2614
CLM_2616	CLM_2616		CLM_2616	2644605	2645957	-	polyA polymerase family protein	identified by match to protein family HMM PF01743%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene2535	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2616
CLM_2617	CLM_2617		CLM_2617	2645947	2646957	-	conserved hypothetical protein		gene	gene2536	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2617
CLM_2618	CLM_2618		CLM_2618	2647335	2647502	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2537	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2618
CLM_2619	CLM_2619		CLM_2619	2647523	2647837	-	caax amino protease family protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02517	gene	gene2538	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2619
CLM_2620	CLM_2620		CLM_2620	2647951	2648115	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2539	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2620
CLM_2621	CLM_2621		CLM_2621	2648540	2649226	+	membrane protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2540	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2621
CLM_2622	CLM_2622		CLM_2622	2649269	2650519	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene2541	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2622
CLM_2623	CLM_2623		CLM_2623	2650512	2651192	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2542	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2623
CLM_2624	CLM_2624		CLM_2624	2651185	2651724	-	UBA/TS-N domain protein	identified by match to protein family HMM PF00627	gene	gene2543	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2624
CLM_2625	CLM_2625		CLM_2625	2651875	2652417	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2544	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2625
CLM_2626	CLM_2626		CLM_2626	2652776	2653585	-	conserved hypothetical protein		gene	gene2545	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2626
CLM_2627	CLM_2627		CLM_2627	2653461	2653619	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2546	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2627
CLM_2628	CLM_2628		CLM_2628	2654321	2654569	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2547	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2628
CLM_2629	CLM_2629		CLM_2629	2654968	2655147	+	conserved domain protein	identified by match to protein family HMM PF07927	gene	gene2548	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2629
CLM_2630	CLM_2630		CLM_2630	2655206	2655619	+	phage protein	identified by match to protein family HMM PF03681	gene	gene2549	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2630
CLM_2631	CLM_2631		CLM_2631	2656559	2657320	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF08239	gene	gene2550	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2631
CLM_2632	CLM_2632		CLM_2632	2657362	2657556	-	conserved hypothetical protein		gene	gene2551	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2632
CLM_2633	CLM_2633		CLM_2633	2657573	2657827	-	conserved hypothetical protein		gene	gene2552	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2633
CLM_2634	CLM_2634		CLM_2634	2657931	2658641	-	phage protein		gene	gene2553	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2634
CLM_2635	CLM_2635		CLM_2635	2658865	2659332	-	conserved hypothetical protein		gene	gene2554	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2635
CLM_2636	CLM_2636		CLM_2636	2659997	2660386	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2555	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2636
CLM_2637	CLM_2637		CLM_2637	2660508	2660717	-	conserved hypothetical protein		gene	gene2556	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2637
CLM_2638	CLM_2638		CLM_2638	2660733	2661038	-	conserved hypothetical protein		gene	gene2557	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2638
CLM_2639	CLM_2639		CLM_2639	2661054	2662298	-	tail fiber protein H		gene	gene2558	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2639
CLM_2640	CLM_2640		CLM_2640	2662302	2662928	-	conserved hypothetical protein		gene	gene2559	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2640
CLM_2641	CLM_2641		CLM_2641	2662909	2664003	-	putative baseplate J-like protein	identified by match to protein family HMM PF04865	gene	gene2560	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2641
CLM_2642	CLM_2642		CLM_2642	2664004	2664411	-	conserved hypothetical protein		gene	gene2561	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2642
CLM_2643	CLM_2643		CLM_2643	2664414	2664758	-	conserved hypothetical protein		gene	gene2562	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2643
CLM_2644	CLM_2644		CLM_2644	2664768	2665742	-	conserved hypothetical protein		gene	gene2563	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2644
CLM_2645	CLM_2645		CLM_2645	2665754	2666434	-	lysM domain protein	identified by match to protein family HMM PF01476	gene	gene2564	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2645
CLM_2646	CLM_2646		CLM_2646	2666434	2668593	-	putative tail length tape measure protein		gene	gene2565	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2646
CLM_2647	CLM_2647		CLM_2647	2668679	2669257	-	putative lipoprotein		gene	gene2566	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2647
CLM_2648	CLM_2648		CLM_2648	2669322	2669417	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2567	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2648
CLM_2649	CLM_2649		CLM_2649	2669498	2669911	-	conserved hypothetical protein	identified by match to protein family HMM PF08890	gene	gene2568	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2649
CLM_2650	CLM_2650		CLM_2650	2669927	2670391	-	core tail protein	identified by match to protein family HMM PF09393	gene	gene2569	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2650
CLM_2651	CLM_2651		CLM_2651	2670395	2671705	-	conserved hypothetical protein		gene	gene2570	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2651
CLM_2652	CLM_2652		CLM_2652	2671707	2671877	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2571	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2652
CLM_2653	CLM_2653		CLM_2653	2671867	2672298	-	conserved hypothetical protein		gene	gene2572	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2653
CLM_2654	CLM_2654		CLM_2654	2672300	2672791	-	phage protein		gene	gene2573	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2654
CLM_2655	CLM_2655		CLM_2655	2672791	2673174	-	conserved hypothetical protein		gene	gene2574	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2655
CLM_2656	CLM_2656		CLM_2656	2673176	2673520	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2575	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2656
CLM_2657	CLM_2657		CLM_2657	2673534	2674499	-	phage coat protein		gene	gene2576	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2657
CLM_2658	CLM_2658		CLM_2658	2674519	2675124	-	putative scaffold protein	identified by similarity to GB:CAA61868.1%3B match to protein family HMM PF06810	gene	gene2577	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2658
CLM_2659	CLM_2659		CLM_2659	2675147	2675461	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2578	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2659
CLM_2660	CLM_2660		CLM_2660	2675547	2675741	-	conserved hypothetical protein		gene	gene2579	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2660
CLM_2661	CLM_2661		CLM_2661	2675774	2677582	-	prophage head protein	identified by match to protein family HMM PF04233%3B match to protein family HMM TIGR01641	gene	gene2580	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2661
CLM_2662	CLM_2662		CLM_2662	2677554	2679005	-	phage portal protein%2C SPP1 family	identified by match to protein family HMM PF05133%3B match to protein family HMM TIGR01538	gene	gene2581	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2662
CLM_2663	CLM_2663		CLM_2663	2679018	2680256	-	phage terminase%2C large subunit%2C pbsx family	identified by match to protein family HMM PF04466%3B match to protein family HMM TIGR01547	gene	gene2582	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2663
CLM_2664	CLM_2664		CLM_2664	2680246	2680815	-	putative phage terminase%2C small subunit	identified by match to protein family HMM PF03592	gene	gene2583	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2664
CLM_2665	CLM_2665		CLM_2665	2681020	2681157	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2584	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2665
CLM_2666	CLM_2666		CLM_2666	2681387	2681866	-	conserved hypothetical protein		gene	gene2585	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2666
CLM_2667	CLM_2667		CLM_2667	2681868	2683238	-	SNF2 domain protein	identified by match to protein family HMM PF00176	gene	gene2586	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2667
CLM_2668	CLM_2668		CLM_2668	2683241	2683408	-	conserved hypothetical protein		gene	gene2587	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2668
CLM_2669	CLM_2669		CLM_2669	2683401	2683589	-	VRR-NUC domain protein		gene	gene2588	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2669
CLM_2670	CLM_2670		CLM_2670	2683948	2686371	-	virulence-associated E domain protein	identified by match to protein family HMM PF05272	gene	gene2589	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2670
CLM_2671	CLM_2671		CLM_2671	2686417	2687442	-	conserved hypothetical protein		gene	gene2590	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2671
CLM_2672	CLM_2672		CLM_2672	2687480	2687710	-	glutamate racemase		gene	gene2591	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2672
CLM_2673	CLM_2673		CLM_2673	2687749	2689716	-	DNA polymerase	identified by match to protein family HMM PF00476	gene	gene2592	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2673
CLM_2674	CLM_2674		CLM_2674	2689722	2690342	-	conserved phage-associated protein		gene	gene2593	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2674
CLM_2675	CLM_2675		CLM_2675	2690354	2691499	-	conserved phage-associated protein		gene	gene2594	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2675
CLM_2676	CLM_2676		CLM_2676	2691499	2691948	-	conserved hypothetical protein		gene	gene2595	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2676
CLM_2677	CLM_2677		CLM_2677	2691982	2692236	-	conserved hypothetical protein		gene	gene2596	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2677
CLM_2678	CLM_2678		CLM_2678	2692236	2692487	-	conserved hypothetical protein		gene	gene2597	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2678
CLM_2679	CLM_2679		CLM_2679	2692506	2692859	-	conserved hypothetical protein		gene	gene2598	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2679
CLM_2680	CLM_2680		CLM_2680	2692923	2693474	-	RNA polymerase sigma factor%2C sigma-70 family	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene2599	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2680
CLM_2681	CLM_2681		CLM_2681	2693679	2693837	-	conserved hypothetical protein		gene	gene2600	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2681
CLM_2682	CLM_2682		CLM_2682	2693850	2694623	-	Gp26 protein	identified by match to protein family HMM PF09669%3B match to protein family HMM TIGR02681	gene	gene2601	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2682
CLM_2683	CLM_2683		CLM_2683	2694684	2694827	-	conserved hypothetical protein		gene	gene2602	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2683
CLM_2684	CLM_2684		CLM_2684	2694928	2695128	-	conserved domain protein	identified by match to protein family HMM PF01381	gene	gene2603	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2684
CLM_2685	CLM_2685		CLM_2685	2695420	2695794	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2604	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2685
CLM_2686	CLM_2686		CLM_2686	2695798	2697336	+	resolvase family protein	identified by match to protein family HMM PF00239	gene	gene2605	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2686
CLM_2687	CLM_2687		CLM_2687	2697461	2698606	+	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	identified by match to protein family HMM PF01134	gene	gene2606	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2687
CLM_2688	CLM_2688	purB	purB	2698657	2700087	-	adenylosuccinate lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00928	gene	gene2607	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2688
CLM_2689	CLM_2689		CLM_2689	2700325	2700546	+	conserved hypothetical protein	identified by match to protein family HMM PF04070	gene	gene2608	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2689
CLM_2690	CLM_2690	ptsH	ptsH	2700574	2700831	-	phosphocarrier protein HPr	identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003	gene	gene2609	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2690
CLM_2691	CLM_2691	aspB	aspB	2700942	2702135	-	aspartate aminotransferase	identified by match to protein family HMM PF00155	gene	gene2610	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2691
CLM_2692	CLM_2692		CLM_2692	2702280	2702636	-	multidrug resistance protein%2C SMR family	identified by match to protein family HMM PF00893	gene	gene2611	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2692
CLM_2693	CLM_2693		CLM_2693	2702633	2703916	-	putative membrane protein		gene	gene2612	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2693
CLM_2694	CLM_2694		CLM_2694	2703935	2704801	-	prenyltransferase%2C UbiA family	identified by match to protein family HMM PF01040	gene	gene2613	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2694
CLM_2695	CLM_2695	spoVS	spoVS	2704964	2705224	-	stage V sporulation protein S	identified by match to protein family HMM PF04232	gene	gene2614	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2695
CLM_2696	CLM_2696		CLM_2696	2705363	2706904	-	HDIG/HD/KH domain protein	identified by match to protein family HMM PF00013%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00277%3B match to protein family HMM TIGR03319	gene	gene2615	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2696
CLM_2697	CLM_2697	recA	recA	2707139	2708206	-	recA protein	identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012	gene	gene2616	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2697
CLM_2698	CLM_2698	pgsA	pgsA	2708345	2708929	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560	gene	gene2617	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2698
CLM_2699	CLM_2699		CLM_2699	2708913	2710250	-	RNA modification enzyme%2C MiaB family	identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01125	gene	gene2618	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2699
CLM_2700	CLM_2700	ftsK	ftsK	2710345	2712621	-	DNA translocase FtsK/SpoIIIE	identified by match to protein family HMM PF01580%3B match to protein family HMM PF09397	gene	gene2619	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2700
CLM_2701	CLM_2701		CLM_2701	2713102	2713794	-	Clp protease family protein	identified by match to protein family HMM PF00574	gene	gene2620	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2701
CLM_2702	CLM_2702	dapG	dapG	2714042	2715247	-	aspartokinase I	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00657	gene	gene2621	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2702
CLM_2703	CLM_2703		CLM_2703	2715263	2715535	-	PRC-barrel domain protein	identified by match to protein family HMM PF05239%3B match to protein family HMM TIGR02888	gene	gene2622	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2703
CLM_2704	CLM_2704		CLM_2704	2715612	2716913	-	peptidase%2C M16 family	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene2623	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2704
CLM_2705	CLM_2705	pnpA	pnpA	2717087	2719195	-	polyribonucleotide nucleotidyltransferase	identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726%3B match to protein family HMM TIGR03591	gene	gene2624	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2705
CLM_2706	CLM_2706	rpsO	rpsO	2719459	2719773	-	ribosomal protein S15	identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952	gene	gene2625	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2706
CLM_2707	CLM_2707	ribF	ribF	2719855	2720775	-	riboflavin biosynthesis protein RibF	identified by match to protein family HMM PF01467%3B match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083	gene	gene2626	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2707
CLM_2708	CLM_2708	truB	truB	2720788	2721657	-	tRNA pseudouridine synthase B	identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431	gene	gene2627	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2708
CLM_2709	CLM_2709		CLM_2709	2721658	2722620	-	DHH family protein	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272	gene	gene2628	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2709
CLM_2710	CLM_2710	rbfA	rbfA	2722610	2722972	-	ribosome-binding factor A	identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082	gene	gene2629	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2710
CLM_2711	CLM_2711	infB	infB	2723003	2725069	-	translation initiation factor IF-2	identified by match to protein family HMM PF00009%3B match to protein family HMM PF01926%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487	gene	gene2630	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2711
CLM_2712	CLM_2712		CLM_2712	2725087	2725404	-	rRNA-binding protein	identified by match to protein family HMM PF01248	gene	gene2631	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2712
CLM_2713	CLM_2713		CLM_2713	2725391	2725663	-	conserved hypothetical protein	identified by match to protein family HMM PF04296	gene	gene2632	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2713
CLM_2714	CLM_2714	nusA	nusA	2725722	2727095	-	N utilization substance protein A	identified by match to protein family HMM PF00575%3B match to protein family HMM PF08529%3B match to protein family HMM TIGR01953	gene	gene2633	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2714
CLM_2715	CLM_2715		CLM_2715	2727112	2727573	-	conserved hypothetical protein	identified by match to protein family HMM PF02576	gene	gene2634	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2715
CLM_2716	CLM_2716	polC	polC	2727878	2732176	-	DNA polymerase III%2C alpha subunit%2C Gram-positive type	identified by match to protein family HMM PF00929%3B match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01405	gene	gene2635	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2716
CLM_2717	CLM_2717	gcpE	gcpE	2732455	2733504	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612	gene	gene2636	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2717
CLM_2718	CLM_2718	rseP	rseP	2733645	2734655	-	RIP metalloprotease RseP	identified by match to protein family HMM PF02163%3B match to protein family HMM TIGR00054	gene	gene2637	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2718
CLM_2719	CLM_2719	dxr	dxr	2734700	2735857	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	identified by match to protein family HMM PF02670%3B match to protein family HMM PF08436%3B match to protein family HMM TIGR00243	gene	gene2638	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2719
CLM_2720	CLM_2720		CLM_2720	2735894	2736874	-	putative membrane protein		gene	gene2639	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2720
CLM_2721	CLM_2721		CLM_2721	2736974	2737096	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2640	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2721
CLM_2722	CLM_2722		CLM_2722	2737155	2737343	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2641	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2722
CLM_2723	CLM_2723	cdsA	cdsA	2737528	2738325	-	phosphatidate cytidylyltransferase	identified by match to protein family HMM PF01148	gene	gene2642	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2723
CLM_2724	CLM_2724	uppS	uppS	2738350	2739108	-	di-trans%2Cpoly-cis-decaprenylcistransferase	identified by similarity to SP:O82827%3B match to protein family HMM PF01255%3B match to protein family HMM TIGR00055	gene	gene2643	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2724
CLM_2725	CLM_2725	frr	frr	2739174	2739728	-	ribosome recycling factor	identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496	gene	gene2644	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2725
CLM_2726	CLM_2726	pyrH	pyrH	2739744	2740460	-	UMP kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075	gene	gene2645	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2726
CLM_2727	CLM_2727	tsf	tsf	2740835	2741758	-	translation elongation factor Ts	identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116	gene	gene2646	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2727
CLM_2728	CLM_2728	rpsB	rpsB	2741846	2742547	-	ribosomal protein S2	identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011	gene	gene2647	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2728
CLM_2729	CLM_2729	codY	codY	2742784	2743560	-	GTP-sensing transcriptional pleiotropic repressor CodY	identified by match to protein family HMM PF06018%3B match to protein family HMM PF08222%3B match to protein family HMM TIGR02787	gene	gene2648	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2729
CLM_2730	CLM_2730	topA	topA	2743767	2745857	-	DNA topoisomerase	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051	gene	gene2649	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2730
CLM_2731	CLM_2731	dprA	dprA	2746241	2747326	-	DNA protecting protein DprA	identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732	gene	gene2650	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2731
CLM_2732	CLM_2732		CLM_2732	2747526	2749049	+	putative Mg chelatase	identified by match to protein family HMM PF01078%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00368	gene	gene2651	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2732
CLM_2733	CLM_2733		CLM_2733	2749065	2749436	+	conserved hypothetical protein TIGR00252	identified by match to protein family HMM PF02021%3B match to protein family HMM TIGR00252	gene	gene2652	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2733
CLM_2734	CLM_2734	rnhB	rnhB	2749519	2750328	-	ribonuclease HII	identified by match to protein family HMM PF01351	gene	gene2653	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2734
CLM_2735	CLM_2735		CLM_2735	2750625	2751503	-	GTP-binding protein	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR03596	gene	gene2654	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2735
CLM_2736	CLM_2736	lepB	lepB	2751808	2752332	-	signal peptidase I	identified by match to protein family HMM PF00717%3B match to protein family HMM TIGR02227	gene	gene2655	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2736
CLM_2737	CLM_2737	rplS	rplS	2752391	2752735	-	ribosomal protein L19	identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024	gene	gene2656	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2737
CLM_2738	CLM_2738	trmD	trmD	2752886	2753608	-	tRNA (guanine-N1)-methyltransferase	identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088	gene	gene2657	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2738
CLM_2739	CLM_2739	rimM	rimM	2753599	2754093	-	16S rRNA processing protein RimM	identified by match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273	gene	gene2658	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2739
CLM_2740	CLM_2740		CLM_2740	2754206	2754433	-	conserved hypothetical protein		gene	gene2659	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2740
CLM_2741	CLM_2741	rpsP	rpsP	2754454	2754702	-	ribosomal protein S16	identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002	gene	gene2660	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2741
CLM_2742	CLM_2742	ffh	ffh	2754733	2756082	-	signal recognition particle protein	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959	gene	gene2661	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2742
CLM_2743	CLM_2743		CLM_2743	2756095	2756427	-	helix-turn-helix protein%2C YlxM/p13 family	identified by match to protein family HMM PF04297	gene	gene2662	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2743
CLM_2744	CLM_2744	ftsY	ftsY	2756651	2757562	-	signal recognition particle-docking protein FtsY	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064	gene	gene2663	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2744
CLM_2745	CLM_2745	smc	smc	2757725	2761306	-	chromosome segregation protein SMC	identified by match to protein family HMM PF02463%3B match to protein family HMM PF06470%3B match to protein family HMM TIGR02168	gene	gene2664	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2745
CLM_2746	CLM_2746		CLM_2746	2761319	2761447	-	conserved hypothetical protein		gene	gene2665	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2746
CLM_2747	CLM_2747		CLM_2747	2761570	2762661	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2666	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2747
CLM_2748	CLM_2748	rnc	rnc	2762654	2763358	-	ribonuclease III	identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191	gene	gene2667	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2748
CLM_2749	CLM_2749	acpP	acpP	2763483	2763716	-	acyl carrier protein	identified by match to protein family HMM PF00550%3B match to protein family HMM TIGR00517	gene	gene2668	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2749
CLM_2750	CLM_2750	plsX	plsX	2763794	2764801	-	fatty acid/phospholipid synthesis protein PlsX	identified by match to protein family HMM PF02504%3B match to protein family HMM TIGR00182	gene	gene2669	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2750
CLM_2751	CLM_2751		CLM_2751	2764891	2765073	-	ribosomal protein L32 family protein	identified by match to protein family HMM PF01783%3B match to protein family HMM TIGR01031	gene	gene2670	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2751
CLM_2752	CLM_2752		CLM_2752	2765087	2765587	-	conserved hypothetical protein	identified by match to protein family HMM PF02620	gene	gene2671	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2752
CLM_2753	CLM_2753	ackA	ackA	2765705	2766898	-	acetate kinase	identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016	gene	gene2672	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2753
CLM_2754	CLM_2754	pta	pta	2767038	2768036	-	phosphate acetyltransferase	identified by match to protein family HMM PF01515%3B match to protein family HMM TIGR00651	gene	gene2673	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2754
CLM_2755	CLM_2755		CLM_2755	2768371	2769249	-	putative membrane protein		gene	gene2674	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2755
CLM_2757	CLM_2757	prdB	prdB	2769616	2770335	-	D-proline reductase%2C gamma subunit PrdB%2C selenocysteine-containing	Selenoprotein. identified by similarity to GB:CAB38127.2	gene	gene2675	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2757
CLM_2758	CLM_2758		CLM_2758	2770365	2770640	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2676	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2758
CLM_2759	CLM_2759	prdA	prdA	2770649	2772763	-	D-proline reductase%2C PrdA proprotein	identified by similarity to GB:CAB38126.1	gene	gene2677	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2759
CLM_2760	CLM_2760		CLM_2760	2772796	2772966	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by glimmer%3B putative	gene	gene2678	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2760
CLM_2761	CLM_2761		CLM_2761	2772988	2774106	-	putative electron transport protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF01512	gene	gene2679	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2761
CLM_2762	CLM_2762		CLM_2762	2775103	2775999	-	putative membrane protein		gene	gene2680	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2762
CLM_2763	CLM_2763		CLM_2763	2776309	2778327	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene2681	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2763
CLM_2765	CLM_2765		CLM_2765	2778717	2778902	-		rrf2 family protein%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2682	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2765
CLM_2766	CLM_2766		CLM_2766	2779347	2780432	-	conserved hypothetical protein		gene	gene2683	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2766
CLM_2767	CLM_2767		CLM_2767	2780509	2781585	-	conserved hypothetical protein		gene	gene2684	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2767
CLM_2768	CLM_2768		CLM_2768	2782140	2783585	+	amino acid permease family protein	identified by match to protein family HMM PF00324	gene	gene2685	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2768
CLM_2769	CLM_2769		CLM_2769	2783723	2784610	-	putative membrane protein		gene	gene2686	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2769
CLM_2770	CLM_2770		CLM_2770	2785140	2786147	-	proline racemase	identified by match to protein family HMM PF05544	gene	gene2687	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2770
CLM_2771	CLM_2771	prdE	prdE	2786161	2786631	-		PrdE protein%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2688	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2771
CLM_2772	CLM_2772	prdD	prdD	2786645	2787421	-		PrdD protein%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2689	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2772
CLM_2774	CLM_2774		CLM_2774	2787762	2788487	-	D-proline reductase%2C gamma subunit PrdB%2C selenocysteine-containing	Selenoprotein. identified by similarity to GB:CAB38127.2	gene	gene2690	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2774
CLM_2775	CLM_2775		CLM_2775	2788563	2788838	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2691	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2775
CLM_2776	CLM_2776	prdA	prdA	2788847	2790955	-	D-proline reductase%2C PrdA proprotein	identified by similarity to GB:CAB38126.1%3B match to protein family HMM PF09338	gene	gene2692	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2776
CLM_2777	CLM_2777		CLM_2777	2790980	2791156	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by glimmer%3B putative	gene	gene2693	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2777
CLM_2778	CLM_2778		CLM_2778	2791178	2792296	-	putative electron transport protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF01512	gene	gene2694	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2778
CLM_2779	CLM_2779		CLM_2779	2792937	2793599	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2695	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2779
CLM_2780	CLM_2780		CLM_2780	2793639	2794943	-	putative electron transport protein	identified by match to protein family HMM PF01512	gene	gene2696	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2780
CLM_2781	CLM_2781		CLM_2781	2794942	2795058	+	conserved hypothetical protein		gene	gene2697	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2781
CLM_2782	CLM_2782		CLM_2782	2795214	2795288	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2698	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2782
CLM_2783	CLM_2783		CLM_2783	2795536	2796063	-	putative membrane protein		gene	gene2699	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2783
CLM_2784	CLM_2784		CLM_2784	2796068	2796547	-	putative membrane protein		gene	gene2700	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2784
CLM_2786	CLM_2786		CLM_2786	2796763	2796942	-	transposase		gene	gene2701	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2786
CLM_2787	CLM_2787		CLM_2787	2797038	2797466	-	PrdA domain protein		gene	gene2702	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2787
CLM_2788	CLM_2788		CLM_2788	2797497	2798807	-	putative electron transport protein	identified by match to protein family HMM PF01512	gene	gene2703	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2788
CLM_2789	CLM_2789		CLM_2789	2798983	2800737	-	sensory box sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF00571%3B match to protein family HMM PF00989%3B match to protein family HMM PF02954%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229	gene	gene2704	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2789
CLM_2790	CLM_2790		CLM_2790	2801073	2802302	+	conserved hypothetical protein	identified by match to protein family HMM PF05636	gene	gene2705	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2790
CLM_2791	CLM_2791		CLM_2791	2802362	2803528	+	nucleoside recognition domain protein	identified by match to protein family HMM PF07670%3B match to protein family HMM TIGR02871	gene	gene2706	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2791
CLM_2792	CLM_2792		CLM_2792	2803529	2804053	-	conserved hypothetical protein		gene	gene2707	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2792
CLM_2793	CLM_2793	coaD	coaD	2804066	2804560	-	pantetheine-phosphate adenylyltransferase	identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510	gene	gene2708	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2793
CLM_2794	CLM_2794		CLM_2794	2804562	2805119	-	putative methyltransferase	identified by match to protein family HMM PF03602%3B match to protein family HMM TIGR00095	gene	gene2709	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2794
CLM_2795	CLM_2795	recG	recG	2805381	2807420	-	ATP-dependent DNA helicase RecG	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00643	gene	gene2710	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2795
CLM_2796	CLM_2796		CLM_2796	2807770	2809395	-	DAK2 domain protein	identified by match to protein family HMM PF02734%3B match to protein family HMM TIGR03599	gene	gene2711	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2796
CLM_2797	CLM_2797		CLM_2797	2809410	2809760	-	conserved hypothetical protein	identified by match to protein family HMM PF03780	gene	gene2712	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2797
CLM_2798	CLM_2798	rpmB	rpmB	2809960	2810151	+	ribosomal protein L28	identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009	gene	gene2713	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2798
CLM_2799	CLM_2799		CLM_2799	2810200	2810319	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2714	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2799
CLM_2800	CLM_2800		CLM_2800	2810397	2810552	-	conserved hypothetical protein		gene	gene2715	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2800
CLM_2801	CLM_2801		CLM_2801	2810981	2811625	-	thiamine diphosphokinase	identified by match to protein family HMM PF04263%3B match to protein family HMM TIGR01378	gene	gene2716	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2801
CLM_2802	CLM_2802	rpe	rpe	2811627	2812277	-	ribulose-phosphate 3-epimerase	identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163	gene	gene2717	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2802
CLM_2803	CLM_2803	rsgA	rsgA	2812271	2813149	-	ribosome small subunit-dependent GTPase A	identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157	gene	gene2718	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2803
CLM_2804	CLM_2804		CLM_2804	2813356	2815320	-	histidine kinase	identified by match to protein family HMM PF00069%3B match to protein family HMM PF03793%3B match to protein family HMM PF07714	gene	gene2719	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2804
CLM_2805	CLM_2805		CLM_2805	2815298	2816047	-	protein phosphatase family protein	identified by match to protein family HMM PF00481	gene	gene2720	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2805
CLM_2806	CLM_2806		CLM_2806	2816066	2817094	-	radical SAM enzyme%2C Cfr family	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048	gene	gene2721	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2806
CLM_2807	CLM_2807	sun	sun	2817106	2818434	-	ribosomal RNA small subunit methyltransferase B	identified by match to protein family HMM PF01029%3B match to protein family HMM PF01189%3B match to protein family HMM TIGR00563	gene	gene2722	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2807
CLM_2808	CLM_2808		CLM_2808	2818455	2819171	-	putative neutral zinc metallopeptidase	identified by match to protein family HMM PF04298	gene	gene2723	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2808
CLM_2809	CLM_2809	fmt	fmt	2819489	2820430	-	methionyl-tRNA formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460	gene	gene2724	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2809
CLM_2810	CLM_2810	def	def	2820447	2820890	-	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene2725	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2810
CLM_2811	CLM_2811	priA	priA	2820918	2823125	-	primosomal protein N'	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595	gene	gene2726	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2811
CLM_2812	CLM_2812	coaBC	coaBC	2823514	2824701	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	identified by match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521	gene	gene2727	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2812
CLM_2813	CLM_2813	rpoZ	rpoZ	2824703	2824921	-	DNA-directed RNA polymerase%2C omega subunit	identified by match to protein family HMM PF01192%3B match to protein family HMM TIGR00690	gene	gene2728	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2813
CLM_2814	CLM_2814	gmk	gmk	2824902	2825531	-	guanylate kinase	identified by match to protein family HMM PF00625%3B match to protein family HMM TIGR03263	gene	gene2729	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2814
CLM_2815	CLM_2815		CLM_2815	2825531	2825806	-	conserved hypothetical protein	identified by match to protein family HMM PF04025	gene	gene2730	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2815
CLM_2816	CLM_2816		CLM_2816	2825822	2826700	-	conserved hypothetical protein TIGR00255	identified by match to protein family HMM PF03755%3B match to protein family HMM PF08340%3B match to protein family HMM TIGR00255	gene	gene2731	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2816
CLM_2817	CLM_2817	ansA	ansA	2826894	2827895	-	L-asparaginase%2C type II	identified by match to protein family HMM PF00710	gene	gene2732	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2817
CLM_2818	CLM_2818		CLM_2818	2828446	2828607	+	conserved hypothetical protein		gene	gene2733	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2818
CLM_2819	CLM_2819	spoIVA	spoIVA	2829317	2830798	-	stage IV sporulation protein A	identified by match to protein family HMM PF09547%3B match to protein family HMM TIGR02836	gene	gene2734	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2819
CLM_2822	CLM_2822		CLM_2822	2831389	2831565	+	conserved hypothetical protein		gene	gene2735	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2822
CLM_2823	CLM_2823		CLM_2823	2831635	2832633	-	NAD-dependent glycerol-3-phosphate dehydrogenase family protein	identified by match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF03721%3B match to protein family HMM PF03807%3B match to protein family HMM PF07479	gene	gene2736	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2823
CLM_2824	CLM_2824	engA	engA	2832804	2834123	-	ribosome-associated GTPase EngA	identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR03594	gene	gene2737	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2824
CLM_2825	CLM_2825		CLM_2825	2834126	2835490	-	conserved hypothetical protein	identified by match to protein family HMM PF04459	gene	gene2738	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2825
CLM_2826	CLM_2826	phoU	phoU	2835912	2836565	-	phosphate transport system regulatory protein PhoU	identified by match to protein family HMM PF01895%3B match to protein family HMM TIGR02135	gene	gene2739	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2826
CLM_2827	CLM_2827	pstB	pstB	2836595	2837344	-	phosphate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972	gene	gene2740	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2827
CLM_2828	CLM_2828	pstA	pstA	2837357	2838241	-	phosphate ABC transporter%2C permease protein PstA	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974	gene	gene2741	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2828
CLM_2829	CLM_2829	pstC	pstC	2838241	2839164	-	phosphate ABC transporter%2C permease protein PstC	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02138	gene	gene2742	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2829
CLM_2830	CLM_2830	pstS	pstS	2839371	2840243	-	phosphate ABC transporter%2C phosphate-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR02136	gene	gene2743	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2830
CLM_2831	CLM_2831		CLM_2831	2840490	2842199	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene2744	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2831
CLM_2832	CLM_2832		CLM_2832	2842211	2842909	-	putative phosphate regulon DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene2745	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2832
CLM_2833	CLM_2833		CLM_2833	2842920	2843639	-	conserved hypothetical protein TIGR00726	identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726	gene	gene2746	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2833
CLM_2834	CLM_2834	nrdR	nrdR	2844037	2844492	-	transcriptional regulator NrdR	identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244	gene	gene2747	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2834
CLM_2835	CLM_2835		CLM_2835	2844623	2844886	-	PRC-barrel domain protein	identified by match to protein family HMM PF05239%3B match to protein family HMM TIGR02888	gene	gene2748	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2835
CLM_2836	CLM_2836	sigG	sigG	2845035	2845808	-	RNA polymerase sigma-G factor	identified by match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02850%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02980	gene	gene2749	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2836
CLM_2837	CLM_2837	sigE	sigE	2845883	2846590	-	RNA polymerase sigma-E factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02835%3B match to protein family HMM TIGR02937	gene	gene2750	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2837
CLM_2838	CLM_2838	spoIIGA	spoIIGA	2846602	2847399	-	sporulation factor SpoIIGA	identified by match to protein family HMM PF03419%3B match to protein family HMM TIGR02854	gene	gene2751	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2838
CLM_2839	CLM_2839	ftsZ	ftsZ	2847712	2848821	-	cell division protein FtsZ	identified by match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065	gene	gene2752	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2839
CLM_2840	CLM_2840	ftsA	ftsA	2848844	2850097	-	cell division protein FtsA	identified by match to protein family HMM PF02491%3B match to protein family HMM TIGR01174	gene	gene2753	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2840
CLM_2841	CLM_2841		CLM_2841	2850254	2851528	-	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene2754	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2841
CLM_2842	CLM_2842		CLM_2842	2851966	2852109	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2755	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2842
CLM_2843	CLM_2843	pilT	pilT	2852187	2853239	-	twitching motility protein	identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420	gene	gene2756	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2843
CLM_2844	CLM_2844	aroE	aroE	2853241	2854017	-	shikimate dehydrogenase	identified by match to protein family HMM PF01488%3B match to protein family HMM PF08501	gene	gene2757	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2844
CLM_2845	CLM_2845	sigK	sigK	2854149	2854853	-	RNA polymerase sigma-K factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02846%3B match to protein family HMM TIGR02937	gene	gene2758	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2845
CLM_2846	CLM_2846		CLM_2846	2855279	2855458	-	conserved hypothetical protein		gene	gene2759	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2846
CLM_2847	CLM_2847		CLM_2847	2855903	2856040	-	conserved hypothetical protein		gene	gene2760	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2847
CLM_2848	CLM_2848		CLM_2848	2856892	2857065	-	conserved hypothetical protein	identified by similarity to GB:ABR33837.1	gene	gene2761	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2848
CLM_2849	CLM_2849		CLM_2849	2857241	2857423	+	conserved domain protein		gene	gene2762	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2849
CLM_2850	CLM_2850		CLM_2850	2857777	2858445	-	conserved domain protein	identified by match to protein family HMM PF09557%3B match to protein family HMM TIGR02271	gene	gene2763	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2850
CLM_2851	CLM_2851		CLM_2851	2858524	2859000	-	conserved hypothetical protein	identified by match to protein family HMM PF09557%3B match to protein family HMM TIGR02271	gene	gene2764	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2851
CLM_2852	CLM_2852		CLM_2852	2859127	2859327	-	acetyltransferase%2C GNAT family%2C degenerate		gene	gene2765	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2852
CLM_2853	CLM_2853		CLM_2853	2859446	2860032	-		conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene2766	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2853
CLM_2855	CLM_2855		CLM_2855	2860055	2860339	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2767	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2855
CLM_2856	CLM_2856		CLM_2856	2860350	2861180	-	conserved hypothetical protein		gene	gene2768	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2856
CLM_2857	CLM_2857		CLM_2857	2861134	2861937	-	recombinase%2C phage RecT family	identified by match to protein family HMM PF03837%3B match to protein family HMM TIGR00616	gene	gene2769	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2857
CLM_2858	CLM_2858		CLM_2858	2862130	2862377	+		transcriptional regulator%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P0A9U6	pseudogene	gene2770	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2858
CLM_2859	CLM_2859		CLM_2859	2862584	2862736	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2771	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2859
CLM_2860	CLM_2860		CLM_2860	2862954	2864624	-	penicillin-binding protein	identified by match to protein family HMM PF00905	gene	gene2772	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2860
CLM_2861	CLM_2861	udk	udk	2864710	2865330	-	uridine kinase	identified by match to protein family HMM PF00485%3B match to protein family HMM TIGR00235	gene	gene2773	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2861
CLM_2862	CLM_2862		CLM_2862	2865478	2866704	-	peptidase%2C U32 family	identified by match to protein family HMM PF01136	gene	gene2774	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2862
CLM_2863	CLM_2863		CLM_2863	2866697	2867353	-	O-methyltransferase family protein	identified by match to protein family HMM PF01596	gene	gene2775	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2863
CLM_2864	CLM_2864		CLM_2864	2867436	2868467	-	conserved hypothetical protein TIGR00247	identified by match to protein family HMM PF02618%3B match to protein family HMM TIGR00247	gene	gene2776	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2864
CLM_2865	CLM_2865	typA	typA	2868545	2870371	-	GTP-binding protein TypA	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394	gene	gene2777	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2865
CLM_2866	CLM_2866		CLM_2866	2871015	2872724	-	RNA-metabolizing metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521%3B match to protein family HMM TIGR00649	gene	gene2778	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2866
CLM_2867	CLM_2867		CLM_2867	2872772	2873224	-	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene2779	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2867
CLM_2868	CLM_2868		CLM_2868	2873346	2873600	-	conserved hypothetical protein	identified by match to protein family HMM PF06949	gene	gene2780	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2868
CLM_2869	CLM_2869		CLM_2869	2873614	2874027	-	conserved hypothetical protein TIGR00250	identified by match to protein family HMM PF03652%3B match to protein family HMM TIGR00250	gene	gene2781	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2869
CLM_2870	CLM_2870		CLM_2870	2874234	2874485	-	conserved hypothetical protein	identified by match to protein family HMM PF06135	gene	gene2782	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2870
CLM_2871	CLM_2871	alaS	alaS	2874600	2877239	-	alanine--tRNA ligase	identified by match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344	gene	gene2783	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2871
CLM_2872	CLM_2872		CLM_2872	2877685	2878713	-	putative membrane protein	identified by match to protein family HMM PF01594	gene	gene2784	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2872
CLM_2873	CLM_2873		CLM_2873	2878726	2879214	-	PRC-barrel domain protein		gene	gene2785	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2873
CLM_2874	CLM_2874	nifU	nifU	2879396	2879824	-	FeS cluster assembly scaffold protein NifU	identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR03419	gene	gene2786	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2874
CLM_2875	CLM_2875	iscS	iscS	2879826	2881019	-	cysteine desulfurase	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR03402	gene	gene2787	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2875
CLM_2876	CLM_2876		CLM_2876	2881012	2881458	-	rrF2 family protein	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene2788	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2876
CLM_2877	CLM_2877		CLM_2877	2881678	2882928	-	ATPase%2C AAA family	identified by match to protein family HMM PF00004	gene	gene2789	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2877
CLM_2878	CLM_2878	hisJ	hisJ	2883265	2884032	-	histidinol-phosphatase	identified by match to protein family HMM PF02811%3B match to protein family HMM TIGR01856	gene	gene2790	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2878
CLM_2879	CLM_2879		CLM_2879	2884296	2885204	-	auxin efflux carrier family protein	identified by match to protein family HMM PF03547	gene	gene2791	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2879
CLM_2880	CLM_2880		CLM_2880	2885312	2886178	-	DegV family protein	identified by match to protein family HMM PF02645%3B match to protein family HMM TIGR00762	gene	gene2792	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2880
CLM_2881	CLM_2881		CLM_2881	2886506	2887090	+	selenium metabolism protein YedF	identified by match to protein family HMM PF01206%3B match to protein family HMM TIGR03527	gene	gene2793	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2881
CLM_2882	CLM_2882		CLM_2882	2887342	2888331	-	ornithine cyclodeaminase family protein	identified by match to protein family HMM PF02423	gene	gene2794	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2882
CLM_2883	CLM_2883		CLM_2883	2888453	2889820	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene2795	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2883
CLM_2884	CLM_2884		CLM_2884	2890564	2891898	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene2796	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2884
CLM_2885	CLM_2885		CLM_2885	2892274	2892927	+	conserved hypothetical protein		gene	gene2797	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2885
CLM_2886	CLM_2886		CLM_2886	2893065	2893541	-	copper amine oxidase domain protein	identified by match to protein family HMM PF07833	gene	gene2798	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2886
CLM_2887	CLM_2887		CLM_2887	2893906	2897667	-	phosphoribosylformylglycinamidine synthase	identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR01857	gene	gene2799	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2887
CLM_2888	CLM_2888		CLM_2888	2897865	2899214	-	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene2800	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2888
CLM_2889	CLM_2889		CLM_2889	2899211	2901688	-	putative phosphoenolpyruvate synthase	identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326	gene	gene2801	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2889
CLM_2890	CLM_2890		CLM_2890	2901693	2901968	-	acyl carrier protein%2C homolog		gene	gene2802	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2890
CLM_2891	CLM_2891		CLM_2891	2901974	2903512	-	putative acyl-CoA synthetase	identified by match to protein family HMM PF00501	gene	gene2803	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2891
CLM_2892	CLM_2892		CLM_2892	2903529	2904539	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase III	identified by match to protein family HMM PF08541%3B match to protein family HMM PF08545	gene	gene2804	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2892
CLM_2893	CLM_2893		CLM_2893	2904548	2905405	-	putative bacT protein		gene	gene2805	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2893
CLM_2894	CLM_2894		CLM_2894	2905446	2907275	-	putative nonribosomal peptide synthetase	identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550	gene	gene2806	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2894
CLM_2895	CLM_2895		CLM_2895	2907315	2907827	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2807	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2895
CLM_2896	CLM_2896		CLM_2896	2907831	2908079	-	D-alanyl carrier protein%2C homolog		gene	gene2808	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2896
CLM_2897	CLM_2897		CLM_2897	2908088	2909104	-	conserved hypothetical protein		gene	gene2809	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2897
CLM_2898	CLM_2898		CLM_2898	2909101	2910294	-	putative seryl-tRNA synthetase		gene	gene2810	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2898
CLM_2899	CLM_2899		CLM_2899	2910313	2911053	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2811	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2899
CLM_2900	CLM_2900	argF	argF	2911518	2912519	-	ornithine carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658	gene	gene2812	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2900
CLM_2901	CLM_2901	arcC	arcC	2912614	2913558	-	carbamate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00746	gene	gene2813	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2901
CLM_2902	CLM_2902	glyA	glyA	2914122	2915363	-	glycine hydroxymethyltransferase	identified by match to protein family HMM PF00464%3B match to protein family HMM PF01212%3B match to protein family HMM PF01276	gene	gene2814	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2902
CLM_2903	CLM_2903		CLM_2903	2915537	2916307	+	putative membrane protein	identified by match to protein family HMM PF06738	gene	gene2815	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2903
CLM_2904	CLM_2904		CLM_2904	2916304	2916792	+	conserved hypothetical protein		gene	gene2816	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2904
CLM_2905	CLM_2905		CLM_2905	2916859	2917128	-	conserved hypothetical protein	identified by match to protein family HMM PF02583	gene	gene2817	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2905
CLM_2906	CLM_2906		CLM_2906	2917329	2918153	-	HAD-superfamily hydrolase%2C subfamily IIB	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene2818	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2906
CLM_2908	CLM_2908		CLM_2908	2918266	2918742	+	putative lipoprotein		gene	gene2819	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2908
CLM_2909	CLM_2909		CLM_2909	2919153	2924018	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2820	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2909
CLM_2910	CLM_2910		CLM_2910	2924095	2925318	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2821	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2910
CLM_2911	CLM_2911		CLM_2911	2925472	2926527	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2822	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2911
CLM_2912	CLM_2912		CLM_2912	2926866	2927558	+	conserved hypothetical protein	identified by similarity to GB:ABS33456.1	gene	gene2823	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2912
CLM_2913	CLM_2913		CLM_2913	2928193	2928426	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2824	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2913
CLM_2914	CLM_2914		CLM_2914	2928614	2929201	-	conserved hypothetical protein		gene	gene2825	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2914
CLM_2915	CLM_2915		CLM_2915	2929330	2930091	-	bacteriophage endolysin	identified by match to protein family HMM PF01520%3B match to protein family HMM PF08239	gene	gene2826	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2915
CLM_2916	CLM_2916		CLM_2916	2930133	2930306	-	conserved hypothetical protein		gene	gene2827	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2916
CLM_2917	CLM_2917		CLM_2917	2930308	2930511	-	bacteriocin UviB	identified by similarity to SP:P15936	gene	gene2828	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2917
CLM_2918	CLM_2918		CLM_2918	2930609	2930770	-	conserved hypothetical protein		gene	gene2829	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2918
CLM_2919	CLM_2919		CLM_2919	2930770	2931066	-	conserved hypothetical protein		gene	gene2830	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2919
CLM_2920	CLM_2920		CLM_2920	2931078	2932346	-	conserved hypothetical protein		gene	gene2831	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2920
CLM_2921	CLM_2921		CLM_2921	2932346	2933503	-	conserved hypothetical protein		gene	gene2832	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2921
CLM_2922	CLM_2922		CLM_2922	2933507	2934376	-	conserved domain protein		gene	gene2833	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2922
CLM_2923	CLM_2923		CLM_2923	2934392	2938318	-	phage tail tape measure protein%2C family	identified by match to protein family HMM TIGR01760	gene	gene2834	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2923
CLM_2924	CLM_2924		CLM_2924	2938375	2938494	-	conserved hypothetical protein		gene	gene2835	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2924
CLM_2925	CLM_2925		CLM_2925	2938608	2939000	-	conserved hypothetical protein		gene	gene2836	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2925
CLM_2926	CLM_2926		CLM_2926	2939058	2939639	-	phage major tail protein%2C Phi13 family	identified by match to protein family HMM TIGR01603	gene	gene2837	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2926
CLM_2927	CLM_2927		CLM_2927	2939703	2940059	-	conserved hypothetical protein		gene	gene2838	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2927
CLM_2928	CLM_2928		CLM_2928	2940075	2940434	-	phage protein%2C HK97 gp10 family	identified by match to protein family HMM TIGR01725	gene	gene2839	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2928
CLM_2929	CLM_2929		CLM_2929	2940435	2940803	-	phage head-tail adaptor protein	identified by match to protein family HMM TIGR01563	gene	gene2840	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2929
CLM_2930	CLM_2930		CLM_2930	2940793	2941086	-	conserved hypothetical protein	identified by match to protein family HMM PF05135%3B match to protein family HMM TIGR01560	gene	gene2841	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2930
CLM_2931	CLM_2931		CLM_2931	2941171	2942403	-	phage major capsid protein%2C HK97 family	identified by match to protein family HMM PF05065%3B match to protein family HMM TIGR01554	gene	gene2842	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2931
CLM_2932	CLM_2932	clpP	clpP	2942477	2943202	-	Clp protease	identified by match to protein family HMM PF00574	gene	gene2843	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2932
CLM_2933	CLM_2933		CLM_2933	2943195	2944445	-	phage portal protein%2C HK97 family	identified by match to protein family HMM PF04860%3B match to protein family HMM TIGR01537	gene	gene2844	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2933
CLM_2934	CLM_2934		CLM_2934	2944489	2944671	-	conserved hypothetical protein		gene	gene2845	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2934
CLM_2935	CLM_2935		CLM_2935	2944695	2946452	-	putative phage terminase%2C large subunit	identified by match to protein family HMM PF03354	gene	gene2846	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2935
CLM_2936	CLM_2936		CLM_2936	2946453	2946938	-	phage terminase%2C small subunit%2C P27 family	identified by match to protein family HMM PF05119%3B match to protein family HMM TIGR01558	gene	gene2847	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2936
CLM_2937	CLM_2937		CLM_2937	2947085	2947552	-	HNH endonuclease domain protein	identified by match to protein family HMM PF01844	gene	gene2848	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2937
CLM_2938	CLM_2938		CLM_2938	2947653	2949446	-	conserved hypothetical protein		gene	gene2849	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2938
CLM_2939	CLM_2939		CLM_2939	2949665	2950258	-	conserved hypothetical protein		gene	gene2850	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2939
CLM_2940	CLM_2940		CLM_2940	2950280	2950477	-	conserved hypothetical protein		gene	gene2851	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2940
CLM_2941	CLM_2941		CLM_2941	2950507	2950752	-	conserved hypothetical protein		gene	gene2852	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2941
CLM_2942	CLM_2942		CLM_2942	2950877	2951059	-	conserved hypothetical protein		gene	gene2853	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2942
CLM_2943	CLM_2943		CLM_2943	2951128	2951340	-	conserved hypothetical protein		gene	gene2854	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2943
CLM_2944	CLM_2944		CLM_2944	2951417	2951737	-	conserved hypothetical protein		gene	gene2855	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2944
CLM_2945	CLM_2945		CLM_2945	2951768	2951962	-	conserved hypothetical protein		gene	gene2856	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2945
CLM_2946	CLM_2946		CLM_2946	2951963	2952211	-	conserved hypothetical protein		gene	gene2857	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2946
CLM_2947	CLM_2947		CLM_2947	2952259	2952846	-	GIY-YIG domain protein		gene	gene2858	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2947
CLM_2948	CLM_2948		CLM_2948	2953142	2953597	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2859	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2948
CLM_2949	CLM_2949		CLM_2949	2953625	2953921	-	conserved hypothetical protein		gene	gene2860	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2949
CLM_2950	CLM_2950		CLM_2950	2954221	2957115	-	conserved hypothetical protein		gene	gene2861	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2950
CLM_2951	CLM_2951		CLM_2951	2957272	2957436	-	conserved hypothetical protein		gene	gene2862	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2951
CLM_2952	CLM_2952		CLM_2952	2957795	2958931	-	conserved hypothetical protein		gene	gene2863	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2952
CLM_2953	CLM_2953		CLM_2953	2958977	2959930	-	conserved hypothetical protein		gene	gene2864	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2953
CLM_2954	CLM_2954		CLM_2954	2960007	2960804	-	conserved hypothetical protein		gene	gene2865	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2954
CLM_2955	CLM_2955		CLM_2955	2960854	2961012	-	conserved hypothetical protein		gene	gene2866	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2955
CLM_2956	CLM_2956		CLM_2956	2961076	2961495	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2867	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2956
CLM_2957	CLM_2957		CLM_2957	2961931	2962587	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2868	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2957
CLM_2958	CLM_2958		CLM_2958	2962719	2962859	-	conserved hypothetical protein		gene	gene2869	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2958
CLM_2959	CLM_2959		CLM_2959	2962870	2963199	-	conserved hypothetical protein		gene	gene2870	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2959
CLM_2960	CLM_2960		CLM_2960	2963386	2963628	+	transcription regulator%2C Cro/CI family -related protein		gene	gene2871	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2960
CLM_2961	CLM_2961		CLM_2961	2963839	2964048	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2872	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2961
CLM_2962	CLM_2962		CLM_2962	2964290	2964736	+	putative restriction endonuclase	identified by match to protein family HMM PF04471	gene	gene2873	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2962
CLM_2963	CLM_2963		CLM_2963	2964855	2965538	-	conserved hypothetical protein		gene	gene2874	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2963
CLM_2964	CLM_2964		CLM_2964	2965604	2965834	-	putative ParB protein		gene	gene2875	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2964
CLM_2965	CLM_2965		CLM_2965	2965848	2966096	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene2876	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2965
CLM_2966	CLM_2966		CLM_2966	2966886	2967818	-	site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589	gene	gene2877	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2966
CLM_2967	CLM_2967		CLM_2967	2967953	2969488	-	peptidase%2C M20/M25/M40 family	identified by match to protein family HMM PF02127	gene	gene2878	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2967
CLM_2968	CLM_2968		CLM_2968	2969479	2970414	-	putative magnesium and cobalt transport protein CorA	identified by match to protein family HMM PF01544	gene	gene2879	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2968
CLM_2969	CLM_2969		CLM_2969	2970872	2971426	-	5-formyltetrahydrofolate cyclo-ligase family protein	identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727	gene	gene2880	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2969
CLM_2970	CLM_2970	hprK	hprK	2971419	2972342	-	HPr(Ser) kinase/phosphatase	identified by match to protein family HMM PF02603%3B match to protein family HMM PF07475	gene	gene2881	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2970
CLM_2971	CLM_2971		CLM_2971	2972374	2972562	-	conserved hypothetical protein	identified by match to protein family HMM PF05979	gene	gene2882	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2971
CLM_2972	CLM_2972		CLM_2972	2972733	2973470	-	SNARE associated Golgi protein	identified by match to protein family HMM PF09335	gene	gene2883	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2972
CLM_2973	CLM_2973		CLM_2973	2973436	2974155	-	SNARE associated Golgi protein	identified by match to protein family HMM PF09335	gene	gene2884	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2973
CLM_2974	CLM_2974		CLM_2974	2974264	2975409	-	cysteine-rich domain protein	identified by match to protein family HMM PF02754	gene	gene2885	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2974
CLM_2975	CLM_2975		CLM_2975	2975409	2976395	-	conserved domain protein		gene	gene2886	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2975
CLM_2976	CLM_2976		CLM_2976	2976385	2977086	-	conserved hypothetical protein		gene	gene2887	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2976
CLM_2977	CLM_2977		CLM_2977	2977086	2977760	-	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00535	gene	gene2888	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2977
CLM_2978	CLM_2978		CLM_2978	2977947	2978921	+	putative thiosulfate sulfurtransferase	identified by match to protein family HMM PF00581	gene	gene2889	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2978
CLM_2979	CLM_2979	glpX	glpX	2979147	2980121	-	fructose-1%2C6-bisphosphatase%2C class II	identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330	gene	gene2890	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2979
CLM_2980	CLM_2980		CLM_2980	2980605	2980781	+	hypothetical protein	identified by glimmer%3B putative	gene	gene2891	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2980
CLM_2981	CLM_2981		CLM_2981	2980813	2981211	-	conserved hypothetical protein		gene	gene2892	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2981
CLM_2982	CLM_2982		CLM_2982	2981666	2982835	-	metallo-beta-lactamase family protein/flavodoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM PF00753	gene	gene2893	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2982
CLM_2983	CLM_2983		CLM_2983	2983383	2983889	-	putative membrane protein		gene	gene2894	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2983
CLM_2984	CLM_2984		CLM_2984	2984941	2985804	-	nucleoside hydrolase%2C IUNH family	identified by match to protein family HMM PF01156	gene	gene2895	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2984
CLM_2985	CLM_2985	def	def	2985821	2986357	-	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene2896	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2985
CLM_2986	CLM_2986		CLM_2986	2986459	2986575	+	conserved hypothetical protein		gene	gene2897	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2986
CLM_2987	CLM_2987		CLM_2987	2986667	2987317	-	V-type ATPase%2C D subunit	identified by match to protein family HMM PF01813%3B match to protein family HMM TIGR00309	gene	gene2898	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2987
CLM_2988	CLM_2988		CLM_2988	2987346	2988731	-	V-type ATPase%2C B subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM PF09378	gene	gene2899	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2988
CLM_2989	CLM_2989		CLM_2989	2988724	2990502	-	V-type ATPase%2C A subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874	gene	gene2900	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2989
CLM_2990	CLM_2990		CLM_2990	2990516	2990833	-	V-type ATPase%2C G subunit	identified by match to protein family HMM PF01990	gene	gene2901	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2990
CLM_2991	CLM_2991		CLM_2991	2990817	2991818	-	V-type ATPase%2C C subunit	identified by match to protein family HMM PF01992	gene	gene2902	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2991
CLM_2992	CLM_2992		CLM_2992	2991833	2992432	-	V-type ATPase%2C E subunit	identified by match to protein family HMM PF01991	gene	gene2903	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2992
CLM_2993	CLM_2993		CLM_2993	2992471	2992947	-	V-type ATPase%2C K subunit	identified by match to protein family HMM PF00137	gene	gene2904	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2993
CLM_2994	CLM_2994		CLM_2994	2992960	2994921	-	V-type ATPase%2C I subunit	identified by match to protein family HMM PF01496	gene	gene2905	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2994
CLM_2995	CLM_2995		CLM_2995	2994908	2995234	-	putative V-type ATPase%2C G subunit		gene	gene2906	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2995
CLM_2996	CLM_2996		CLM_2996	2995558	2997243	-	putative B12-binding Fe-S oxidoreductase	identified by match to protein family HMM PF02310%3B match to protein family HMM PF04055	gene	gene2907	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2996
CLM_2997	CLM_2997		CLM_2997	2997218	2997793	-	conserved hypothetical protein		gene	gene2908	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2997
CLM_2998	CLM_2998		CLM_2998	2997965	2998684	-	putative phospholipase C	identified by match to protein family HMM PF00882	gene	gene2909	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2998
CLM_2999	CLM_2999		CLM_2999	2998706	2999905	-	conserved hypothetical protein		gene	gene2910	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_2999
CLM_3000	CLM_3000		CLM_3000	2999944	3002490	-	calcium-translocating P-type ATPase%2C PMCA-type	identified by similarity to SP:P04191%3B match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494	gene	gene2911	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3000
CLM_3001	CLM_3001		CLM_3001	3002809	3004452	+	putative manganese-dependent inorganic pyrophosphatase	identified by match to protein family HMM PF00571%3B match to protein family HMM PF02833%3B match to protein family HMM PF07085	gene	gene2912	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3001
CLM_3002	CLM_3002		CLM_3002	3004671	3005249	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2913	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3002
CLM_3003	CLM_3003		CLM_3003	3005541	3006332	-	flagellar basal body rod protein	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR03506	gene	gene2914	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3003
CLM_3004	CLM_3004		CLM_3004	3006387	3007154	-	flagellar basal body rod protein	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR03506	gene	gene2915	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3004
CLM_3005	CLM_3005		CLM_3005	3007220	3007336	-	conserved hypothetical protein		gene	gene2916	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3005
CLM_3006	CLM_3006		CLM_3006	3007414	3008052	-	conserved hypothetical protein		gene	gene2917	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3006
CLM_3007	CLM_3007	fliA	fliA	3008081	3008809	-	RNA polymerase sigma factor for flagellar operon FliA	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02479%3B match to protein family HMM TIGR02937	gene	gene2918	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3007
CLM_3008	CLM_3008		CLM_3008	3008823	3009482	-	conserved hypothetical protein	identified by match to protein family HMM PF07238	gene	gene2919	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3008
CLM_3009	CLM_3009	flhG	flhG	3009497	3010357	-	flagellar biosynthesis protein FlhG	identified by match to protein family HMM PF01656	gene	gene2920	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3009
CLM_3010	CLM_3010	flhF	flhF	3010351	3011577	-	flagellar biosynthesis protein FlhF	identified by match to protein family HMM PF00448%3B match to protein family HMM TIGR03499	gene	gene2921	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3010
CLM_3011	CLM_3011	flhA	flhA	3011574	3013640	-	flagellar biosynthesis protein FlhA	identified by match to protein family HMM PF00771%3B match to protein family HMM TIGR01398	gene	gene2922	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3011
CLM_3012	CLM_3012		CLM_3012	3013668	3015497	-	flagellar biosynthetic protein FliR/FlhB	identified by match to protein family HMM PF01311%3B match to protein family HMM PF01312%3B match to protein family HMM TIGR00328	gene	gene2923	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3012
CLM_3013	CLM_3013	fliQ	fliQ	3015531	3015800	-	flagellar biosynthesis protein FliQ	identified by match to protein family HMM PF01313%3B match to protein family HMM TIGR01402	gene	gene2924	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3013
CLM_3014	CLM_3014	fliP	fliP	3015812	3016588	-	flagellar biosynthetic protein FliP	identified by match to protein family HMM PF00813%3B match to protein family HMM TIGR01103	gene	gene2925	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3014
CLM_3015	CLM_3015		CLM_3015	3016572	3016979	-	flagellar biosynthesis domain protein	identified by match to protein family HMM TIGR03500	gene	gene2926	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3015
CLM_3016	CLM_3016	fliL	fliL	3017052	3017573	-	flagellar basal body-associated protein FliL	identified by match to protein family HMM PF03748	gene	gene2927	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3016
CLM_3017	CLM_3017	motB	motB	3017570	3018313	-	chemotaxis motB protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00691	gene	gene2928	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3017
CLM_3018	CLM_3018	motA	motA	3018306	3019118	-	chemotaxis MotA protein	identified by match to protein family HMM PF01618	gene	gene2929	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3018
CLM_3019	CLM_3019		CLM_3019	3019115	3019324	-	flagellar protein FlbD	identified by match to protein family HMM PF06289	gene	gene2930	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3019
CLM_3020	CLM_3020		CLM_3020	3019560	3020564	-	flagellar hook protein FlgE	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR03506	gene	gene2931	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3020
CLM_3021	CLM_3021		CLM_3021	3020646	3021065	-	flagellar operon protein	identified by match to protein family HMM TIGR02530	gene	gene2932	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3021
CLM_3022	CLM_3022	flgD	flgD	3021080	3021901	-	flagellar hook capping protein	identified by match to protein family HMM PF03963	gene	gene2933	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3022
CLM_3023	CLM_3023	fliK	fliK	3021931	3023319	-	flagellar hook-length control protein	identified by match to protein family HMM PF02120	gene	gene2934	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3023
CLM_3024	CLM_3024	fliJ	fliJ	3023325	3023762	-	flagellar export protein FliJ	identified by match to protein family HMM TIGR02473	gene	gene2935	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3024
CLM_3025	CLM_3025	fliI	fliI	3023866	3025182	-	flagellar protein export ATPase FliI	identified by match to protein family HMM PF00006%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01026%3B match to protein family HMM TIGR03496%3B match to protein family HMM TIGR03497	gene	gene2936	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3025
CLM_3026	CLM_3026	fliH	fliH	3025222	3025998	-	flagellar assembly protein FliH		gene	gene2937	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3026
CLM_3027	CLM_3027	fliG	fliG	3025982	3026995	-	flagellar motor switch protein FliG	identified by match to protein family HMM PF01706%3B match to protein family HMM TIGR00207	gene	gene2938	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3027
CLM_3028	CLM_3028	fliF	fliF	3027002	3028582	-	flagellar M-ring protein fliF	identified by match to protein family HMM PF01514%3B match to protein family HMM PF08345%3B match to protein family HMM TIGR00206	gene	gene2939	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3028
CLM_3029	CLM_3029	fliE	fliE	3028598	3028912	-	flagellar hook-basal body complex protein FliE	identified by match to protein family HMM PF02049%3B match to protein family HMM TIGR00205	gene	gene2940	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3029
CLM_3030	CLM_3030	flgC	flgC	3028924	3029358	-	flagellar basal-body rod protein FlgC	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR01395	gene	gene2941	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3030
CLM_3031	CLM_3031	flgB	flgB	3029456	3029857	-	flagellar basal-body rod protein FlgB	identified by match to protein family HMM TIGR01396	gene	gene2942	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3031
CLM_3032	CLM_3032		CLM_3032	3030430	3031284	-	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene2943	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3032
CLM_3033	CLM_3033		CLM_3033	3031428	3031796	-	conserved hypothetical protein		gene	gene2944	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3033
CLM_3034	CLM_3034	argH	argH	3032336	3033658	-	argininosuccinate lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00838	gene	gene2945	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3034
CLM_3035	CLM_3035	argG	argG	3033680	3034873	-	argininosuccinate synthase	identified by match to protein family HMM PF00764%3B match to protein family HMM TIGR00032	gene	gene2946	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3035
CLM_3036	CLM_3036		CLM_3036	3035168	3035506	-	conserved hypothetical protein		gene	gene2947	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3036
CLM_3037	CLM_3037		CLM_3037	3035529	3035873	-	conserved hypothetical protein		gene	gene2948	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3037
CLM_3038	CLM_3038	cls	cls	3036053	3037483	-	cardiolipin synthetase	identified by match to protein family HMM PF00614	gene	gene2949	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3038
CLM_3039	CLM_3039		CLM_3039	3037810	3038700	+	conserved hypothetical protein		gene	gene2950	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3039
CLM_3040	CLM_3040		CLM_3040	3038875	3039060	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2951	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3040
CLM_3041	CLM_3041		CLM_3041	3039343	3039792	-	VanZ family protein	identified by match to protein family HMM PF04892	gene	gene2952	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3041
CLM_3042	CLM_3042		CLM_3042	3040043	3041473	-	polysaccharide biosynthesis protein	identified by match to protein family HMM PF01943	gene	gene2953	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3042
CLM_3043	CLM_3043		CLM_3043	3041513	3042430	-	NAD-dependent epimerase/dehydratase family protein	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene2954	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3043
CLM_3044	CLM_3044		CLM_3044	3042459	3043526	-	neuB family protein	identified by match to protein family HMM PF03102%3B match to protein family HMM PF08666	gene	gene2955	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3044
CLM_3045	CLM_3045		CLM_3045	3043559	3045220	-	cytidylyltransferase domain protein	identified by match to protein family HMM PF02348%3B match to protein family HMM PF04101	gene	gene2956	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3045
CLM_3046	CLM_3046		CLM_3046	3045235	3046404	-	putative membrane protein		gene	gene2957	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3046
CLM_3047	CLM_3047		CLM_3047	3046438	3047391	-	lipooligosaccharide sialyltransferase	identified by match to protein family HMM PF05855	gene	gene2958	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3047
CLM_3048	CLM_3048		CLM_3048	3047418	3048188	-	exopolysaccharide biosynthesis protein		gene	gene2959	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3048
CLM_3049	CLM_3049	glf	glf	3048188	3049288	-	UDP-galactopyranose mutase	identified by match to protein family HMM PF03275%3B match to protein family HMM TIGR00031	gene	gene2960	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3049
CLM_3050	CLM_3050		CLM_3050	3049393	3050070	-	putative undecaprenyl-phosphate galactosephosphotransferase	identified by match to protein family HMM PF02397	gene	gene2961	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3050
CLM_3051	CLM_3051		CLM_3051	3050281	3050991	-	capsular exopolysaccharide family protein	identified by match to protein family HMM TIGR01007	gene	gene2962	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3051
CLM_3052	CLM_3052		CLM_3052	3051010	3051783	-	exopolysaccharide biosynthesis protein	identified by match to protein family HMM PF02811	gene	gene2963	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3052
CLM_3053	CLM_3053		CLM_3053	3051788	3052471	-	capsular polysaccharide biosynthsis protein	identified by match to protein family HMM PF02706	gene	gene2964	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3053
CLM_3054	CLM_3054		CLM_3054	3052506	3053468	-	cell envelope-related transcriptional attenuator domain protein	identified by match to protein family HMM PF03816%3B match to protein family HMM TIGR00350	gene	gene2965	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3054
CLM_3055	CLM_3055		CLM_3055	3053933	3054088	-	conserved hypothetical protein		gene	gene2966	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3055
CLM_3056	CLM_3056		CLM_3056	3054238	3054411	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2967	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3056
CLM_3057	CLM_3057		CLM_3057	3054532	3054699	-	conserved hypothetical protein		gene	gene2968	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3057
CLM_3058	CLM_3058		CLM_3058	3054839	3054985	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2969	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3058
CLM_3059	CLM_3059		CLM_3059	3055183	3056031	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene2970	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3059
CLM_3060	CLM_3060	fliC	fliC	3056108	3056926	-	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene2971	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3060
CLM_3061	CLM_3061		CLM_3061	3057111	3057608	-	conserved hypothetical protein		gene	gene2972	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3061
CLM_3062	CLM_3062		CLM_3062	3057694	3059163	-	conserved domain protein		gene	gene2973	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3062
CLM_3064	CLM_3064		CLM_3064	3059382	3060392	-	glycosyl transferase homolog	identified by match to protein family HMM TIGR03590	gene	gene2974	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3064
CLM_3065	CLM_3065		CLM_3065	3060887	3061891	-	lipase/acylhydrolase%2C GDSL family	identified by match to protein family HMM PF00657	gene	gene2975	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3065
CLM_3066	CLM_3066		CLM_3066	3061981	3063087	-	conserved hypothetical protein		gene	gene2976	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3066
CLM_3067	CLM_3067		CLM_3067	3063111	3064226	-	glycosyl transferase%2C family 2	identified by match to protein family HMM PF00515%3B match to protein family HMM PF00535%3B match to protein family HMM PF07719	gene	gene2977	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3067
CLM_3068	CLM_3068		CLM_3068	3064244	3065107	-	conserved hypothetical protein		gene	gene2978	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3068
CLM_3069	CLM_3069		CLM_3069	3065114	3066442	-	TPR/glycosyl transferase domain protein	identified by match to protein family HMM PF00534	gene	gene2979	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3069
CLM_3070	CLM_3070		CLM_3070	3066439	3066969	-	conserved hypothetical protein		gene	gene2980	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3070
CLM_3071	CLM_3071		CLM_3071	3066993	3068171	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene2981	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3071
CLM_3072	CLM_3072		CLM_3072	3068208	3069995	-	TPR/glycosyl transferase domain protein		gene	gene2982	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3072
CLM_3073	CLM_3073		CLM_3073	3070111	3070626	-	conserved hypothetical protein		gene	gene2983	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3073
CLM_3074	CLM_3074		CLM_3074	3070627	3072075	-	conserved hypothetical protein		gene	gene2984	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3074
CLM_3075	CLM_3075		CLM_3075	3072113	3072829	-	hypothetical protein	identified by glimmer%3B putative	gene	gene2985	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3075
CLM_3076	CLM_3076		CLM_3076	3072981	3074294	-	conserved hypothetical protein		gene	gene2986	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3076
CLM_3077	CLM_3077		CLM_3077	3074312	3075496	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene2987	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3077
CLM_3078	CLM_3078		CLM_3078	3075529	3076866	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2988	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3078
CLM_3079	CLM_3079		CLM_3079	3076925	3078235	-	GDP-mannose 6-dehydrogenase	identified by match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026	gene	gene2989	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3079
CLM_3080	CLM_3080		CLM_3080	3078273	3079748	-	conserved hypothetical protein		gene	gene2990	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3080
CLM_3081	CLM_3081		CLM_3081	3079789	3080919	-	lipopolysaccharide biosynthesis protein RffA	identified by match to protein family HMM PF01041%3B match to protein family HMM TIGR02379	gene	gene2991	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3081
CLM_3082	CLM_3082		CLM_3082	3080906	3081637	-	conserved hypothetical protein	identified by match to protein family HMM PF08889	gene	gene2992	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3082
CLM_3083	CLM_3083		CLM_3083	3081662	3082633	-	radical SAM	identified by match to protein family HMM PF04055	gene	gene2993	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3083
CLM_3084	CLM_3084	rfbA	rfbA	3082665	3083522	-	glucose-1-phosphate thymidylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01207	gene	gene2994	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3084
CLM_3085	CLM_3085	rfbB	rfbB	3083548	3084612	-	dTDP-glucose 4%2C6-dehydratase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181	gene	gene2995	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3085
CLM_3086	CLM_3086	pseI	pseI	3084672	3085724	-	pseudaminic acid synthase	identified by match to protein family HMM PF03102%3B match to protein family HMM PF08666%3B match to protein family HMM TIGR03586	gene	gene2996	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3086
CLM_3087	CLM_3087		CLM_3087	3085866	3086621	-	polysaccharide biosynthesis protein	identified by match to protein family HMM PF02348	gene	gene2997	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3087
CLM_3088	CLM_3088		CLM_3088	3086744	3087415	-	HAD-superfamily hydrolase%2C subfamily IA%2C variant 1	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549	gene	gene2998	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3088
CLM_3089	CLM_3089		CLM_3089	3087455	3088483	-	ATP domain protein	identified by match to protein family HMM PF02655	gene	gene2999	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3089
CLM_3090	CLM_3090		CLM_3090	3088704	3089768	-	NAD-dependent epimerase/dehydratase family protein	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene3000	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3090
CLM_3091	CLM_3091		CLM_3091	3089888	3090913	-	exopolysaccharide biosynthesis protein	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993	gene	gene3001	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3091
CLM_3092	CLM_3092		CLM_3092	3090954	3092375	-	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00515%3B match to protein family HMM PF00535%3B match to protein family HMM PF07719	gene	gene3002	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3092
CLM_3093	CLM_3093		CLM_3093	3092384	3092731	-	conserved hypothetical protein		gene	gene3003	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3093
CLM_3094	CLM_3094		CLM_3094	3092735	3094438	-	conserved hypothetical protein	identified by match to protein family HMM PF01973	gene	gene3004	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3094
CLM_3095	CLM_3095		CLM_3095	3094463	3096388	-	glycosyl transferase%2C group 2 family	identified by match to protein family HMM PF00515%3B match to protein family HMM PF00535	gene	gene3005	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3095
CLM_3096	CLM_3096		CLM_3096	3096587	3097414	-	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene3006	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3096
CLM_3097	CLM_3097		CLM_3097	3097628	3098455	-	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene3007	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3097
CLM_3098	CLM_3098		CLM_3098	3098605	3098946	-	conserved hypothetical protein		gene	gene3008	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3098
CLM_3099	CLM_3099	fliD	fliD	3098973	3101408	-	Flagellar hook-associated protein 2	identified by match to protein family HMM PF02465%3B match to protein family HMM PF07195	gene	gene3009	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3099
CLM_3100	CLM_3100	fliS	fliS	3101462	3101851	-	flagellar protein FliS	identified by match to protein family HMM PF02561%3B match to protein family HMM TIGR00208	gene	gene3010	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3100
CLM_3101	CLM_3101		CLM_3101	3101888	3102187	-	conserved hypothetical protein		gene	gene3011	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3101
CLM_3102	CLM_3102		CLM_3102	3102242	3102598	-	flaG family protein	identified by match to protein family HMM PF03646	gene	gene3012	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3102
CLM_3103	CLM_3103	csrA	csrA	3102614	3102832	-	carbon storage regulator	identified by match to protein family HMM PF02599%3B match to protein family HMM TIGR00202	gene	gene3013	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3103
CLM_3104	CLM_3104	fliW	fliW	3102832	3103263	-	flagellar assembly factor FliW	identified by match to protein family HMM PF02623	gene	gene3014	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3104
CLM_3105	CLM_3105	flgL	flgL	3103352	3104314	-	flagellar hook-associated protein 3	identified by match to protein family HMM PF00669%3B match to protein family HMM TIGR02550	gene	gene3015	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3105
CLM_3106	CLM_3106	flgK	flgK	3104332	3106200	-	flagellar hook-associated protein FlgK	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492	gene	gene3016	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3106
CLM_3107	CLM_3107		CLM_3107	3106489	3106893	-	flgN family protein	identified by match to protein family HMM PF05130	gene	gene3017	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3107
CLM_3108	CLM_3108		CLM_3108	3106893	3107174	-	regulator of flagellin synthesis FlgM	identified by match to protein family HMM PF04316	gene	gene3018	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3108
CLM_3109	CLM_3109	fliN	fliN	3107671	3108831	-	flagellar motor switch protein FliN	identified by match to protein family HMM PF01052%3B match to protein family HMM PF04509%3B match to protein family HMM TIGR02480	gene	gene3019	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3109
CLM_3110	CLM_3110	fliM	fliM	3108824	3109819	-	flagellar motor switch protein FliM	identified by match to protein family HMM PF01052%3B match to protein family HMM PF02154%3B match to protein family HMM TIGR01397	gene	gene3020	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3110
CLM_3111	CLM_3111		CLM_3111	3109847	3110242	-	putative chemotaxis protein CheW	identified by match to protein family HMM PF01584	gene	gene3021	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3111
CLM_3112	CLM_3112	cheY	cheY	3110342	3110701	-	chemotaxis protein CheY	identified by match to protein family HMM PF00072	gene	gene3022	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3112
CLM_3113	CLM_3113	cheC	cheC	3110729	3111328	-	chemotaxis protein CheC	identified by match to protein family HMM PF04509	gene	gene3023	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3113
CLM_3114	CLM_3114	cheA	cheA	3111354	3113429	-	chemotaxis protein CheA	identified by match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895%3B match to protein family HMM PF07194	gene	gene3024	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3114
CLM_3115	CLM_3115	cheR	cheR	3113442	3114212	-	chemotaxis protein methyltransferase CheR	identified by match to protein family HMM PF01739%3B match to protein family HMM PF03705	gene	gene3025	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3115
CLM_3116	CLM_3116	cheB	cheB	3114227	3115291	-	protein-glutamate methylesterase CheB	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01339	gene	gene3026	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3116
CLM_3117	CLM_3117	cheD	cheD	3115314	3115802	-	chemotaxis protein CheD	identified by match to protein family HMM PF03975	gene	gene3027	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3117
CLM_3118	CLM_3118	cheW	cheW	3115819	3116265	-	chemotaxis protein CheW	identified by match to protein family HMM PF01584	gene	gene3028	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3118
CLM_3119	CLM_3119		CLM_3119	3116281	3118314	-	conserved hypothetical protein	identified by match to protein family HMM PF03961	gene	gene3029	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3119
CLM_3120	CLM_3120		CLM_3120	3118567	3120522	-	PTS system%2C glucose family%2C IIABC component	identified by match to protein family HMM PF00358%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00830	gene	gene3030	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3120
CLM_3121	CLM_3121		CLM_3121	3120605	3121432	-	transcriptional antiterminator%2C BglG family	identified by match to protein family HMM PF00874%3B match to protein family HMM PF03123	gene	gene3031	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3121
CLM_3122	CLM_3122		CLM_3122	3121681	3122514	-	putative branched-chain amino acid aminotransferase	identified by match to protein family HMM PF01063	gene	gene3032	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3122
CLM_3123	CLM_3123		CLM_3123	3122641	3123282	-	HAD-superfamily subfamily IB hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01488%3B match to protein family HMM TIGR01490	gene	gene3033	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3123
CLM_3124	CLM_3124		CLM_3124	3123539	3123934	-	conserved hypothetical protein		gene	gene3034	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3124
CLM_3125	CLM_3125		CLM_3125	3124195	3124311	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3035	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3125
CLM_3126	CLM_3126		CLM_3126	3124577	3128155	-	pyruvate ferredoxin oxidoreductase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176	gene	gene3036	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3126
CLM_3127	CLM_3127	murG	murG	3128786	3129850	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	identified by match to protein family HMM PF03033%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01133	gene	gene3037	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3127
CLM_3128	CLM_3128		CLM_3128	3130175	3130339	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3038	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3128
CLM_3129	CLM_3129		CLM_3129	3130453	3132561	-	sensory box histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene3039	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3129
CLM_3130	CLM_3130	recJ	recJ	3133792	3135573	-	single-stranded-DNA-specific exonuclease RecJ	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644	gene	gene3040	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3130
CLM_3131	CLM_3131		CLM_3131	3135764	3136582	+	AP endonuclease%2C family 2	identified by match to protein family HMM PF01261	gene	gene3041	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3131
CLM_3132	CLM_3132		CLM_3132	3136866	3138269	-	NHL repeat protein	identified by match to protein family HMM PF01436	gene	gene3042	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3132
CLM_3133	CLM_3133		CLM_3133	3138858	3140075	-	peptidase%2C M16 family	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene3043	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3133
CLM_3134	CLM_3134		CLM_3134	3140455	3140865	+	putative membrane protein		gene	gene3044	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3134
CLM_3135	CLM_3135		CLM_3135	3140933	3141484	+	DJ-1 family protein	identified by match to protein family HMM PF01965%3B match to protein family HMM TIGR01383	gene	gene3045	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3135
CLM_3136	CLM_3136	glpP	glpP	3141697	3142260	-	glycerol uptake operon antiterminator regulatory protein	identified by match to protein family HMM PF04309	gene	gene3046	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3136
CLM_3137	CLM_3137		CLM_3137	3142309	3145179	-	DNA topoisomerase%2C GyrA/ParC subunit family	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989	gene	gene3047	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3137
CLM_3138	CLM_3138		CLM_3138	3145253	3147208	-	DNA topoisomerase%2C GyrB/ParE subunit family	identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518	gene	gene3048	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3138
CLM_3139	CLM_3139		CLM_3139	3147575	3147952	-	conserved domain protein		gene	gene3049	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3139
CLM_3140	CLM_3140		CLM_3140	3148139	3149311	+	transporter%2C CPA2 family	identified by match to protein family HMM PF00999	gene	gene3050	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3140
CLM_3141	CLM_3141		CLM_3141	3149324	3149674	+	conserved hypothetical protein		gene	gene3051	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3141
CLM_3142	CLM_3142		CLM_3142	3150114	3150350	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3052	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3142
CLM_3143	CLM_3143		CLM_3143	3150370	3151263	+	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene3053	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3143
CLM_3144	CLM_3144		CLM_3144	3151345	3152634	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3054	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3144
CLM_3145	CLM_3145	galE	galE	3152672	3153652	-	UDP-glucose 4-epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179	gene	gene3055	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3145
CLM_3146	CLM_3146		CLM_3146	3153999	3154415	-	flavodoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01753	gene	gene3056	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3146
CLM_3147	CLM_3147		CLM_3147	3154683	3156104	-	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene3057	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3147
CLM_3148	CLM_3148		CLM_3148	3156725	3158791	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene3058	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3148
CLM_3149	CLM_3149		CLM_3149	3159190	3160227	+	LD-carboxypeptidase family protein	identified by match to protein family HMM PF02016	gene	gene3059	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3149
CLM_3150	CLM_3150	glpK	glpK	3160658	3162154	-	glycerol kinase	identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01311	gene	gene3060	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3150
CLM_3151	CLM_3151		CLM_3151	3162407	3163111	-	glycerol uptake facilitator protein	identified by match to protein family HMM PF00230%3B match to protein family HMM TIGR00861	gene	gene3061	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3151
CLM_3152	CLM_3152		CLM_3152	3163645	3163965	+	conserved hypothetical protein	identified by match to protein family HMM PF01906	gene	gene3062	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3152
CLM_3153	CLM_3153		CLM_3153	3164077	3164775	-	membrane protein%2C VanZ family	identified by match to protein family HMM PF04892	gene	gene3063	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3153
CLM_3154	CLM_3154		CLM_3154	3164907	3165983	-	ABC transporter%2C permease protein		gene	gene3064	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3154
CLM_3155	CLM_3155		CLM_3155	3165967	3166863	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3065	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3155
CLM_3156	CLM_3156		CLM_3156	3166869	3167249	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392	gene	gene3066	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3156
CLM_3157	CLM_3157		CLM_3157	3167423	3167938	-	membrane protein%2C VanZ family	identified by match to protein family HMM PF04892	gene	gene3067	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3157
CLM_3158	CLM_3158	hcp	hcp	3168369	3170081	+	hydroxylamine reductase	identified by match to protein family HMM PF03063%3B match to protein family HMM TIGR01703	gene	gene3068	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3158
CLM_3159	CLM_3159		CLM_3159	3170945	3171535	+	membrane-spanning protein		gene	gene3069	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3159
CLM_3160	CLM_3160		CLM_3160	3171840	3173072	+	aminopeptidase II	identified by match to protein family HMM PF02073	gene	gene3070	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3160
CLM_3161	CLM_3161	gerAC	gerAC	3173444	3174577	-	spore germination protein%2C GerAC	identified by match to protein family HMM PF05504%3B match to protein family HMM TIGR02887	gene	gene3071	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3161
CLM_3162	CLM_3162		CLM_3162	3174546	3175664	-	spore germination protein	identified by match to protein family HMM PF03845%3B match to protein family HMM TIGR00912	gene	gene3072	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3162
CLM_3163	CLM_3163	gerAA	gerAA	3175645	3177141	-	spore germination protein%2C GerAA	identified by match to protein family HMM PF03323	gene	gene3073	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3163
CLM_3164	CLM_3164		CLM_3164	3177430	3177639	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3074	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3164
CLM_3165	CLM_3165		CLM_3165	3178025	3178756	-	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene3075	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3165
CLM_3166	CLM_3166		CLM_3166	3178975	3180549	-	ATP-dependent RNA helicase%2C DEAD/DEAH box family	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880	gene	gene3076	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3166
CLM_3167	CLM_3167		CLM_3167	3180626	3180793	-	conserved hypothetical protein		gene	gene3077	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3167
CLM_3168	CLM_3168		CLM_3168	3181225	3181617	+	conserved hypothetical protein		gene	gene3078	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3168
CLM_3169	CLM_3169		CLM_3169	3181706	3183400	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3079	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3169
CLM_3170	CLM_3170		CLM_3170	3183596	3184006	-	universal stress protein family protein	identified by match to protein family HMM PF00582	gene	gene3080	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3170
CLM_3171	CLM_3171		CLM_3171	3184317	3184496	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3081	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3171
CLM_3172	CLM_3172		CLM_3172	3184639	3185280	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene3082	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3172
CLM_3173	CLM_3173		CLM_3173	3185530	3186447	-	glutaminase	identified by match to protein family HMM PF04960	gene	gene3083	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3173
CLM_3174	CLM_3174		CLM_3174	3186842	3187867	-	conserved hypothetical protein	identified by match to protein family HMM PF06725	gene	gene3084	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3174
CLM_3175	CLM_3175		CLM_3175	3188245	3190305	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene3085	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3175
CLM_3176	CLM_3176		CLM_3176	3190824	3191624	-	putative membrane protein		gene	gene3086	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3176
CLM_3177	CLM_3177	nrdB	nrdB	3191969	3192997	-	ribonucleoside-diphosphate reductase%2C beta subunit	identified by match to protein family HMM PF00268	gene	gene3087	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3177
CLM_3178	CLM_3178	nrdA	nrdA	3193193	3195484	-	ribonucleoside-diphosphate reductase%2C alpha subunit	identified by match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM PF03477%3B match to protein family HMM TIGR02506	gene	gene3088	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3178
CLM_3179	CLM_3179		CLM_3179	3196079	3197200	+	conserved hypothetical protein		gene	gene3089	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3179
CLM_3180	CLM_3180		CLM_3180	3197437	3198288	+	conserved hypothetical protein		gene	gene3090	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3180
CLM_3181	CLM_3181	dinB	dinB	3198448	3199497	-	DNA polymerase IV	identified by match to protein family HMM PF00817	gene	gene3091	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3181
CLM_3182	CLM_3182		CLM_3182	3199944	3201179	-	dihydroorotate dehydrogenase family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01180%3B match to protein family HMM TIGR01037	gene	gene3092	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3182
CLM_3183	CLM_3183		CLM_3183	3201179	3202495	-	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene3093	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3183
CLM_3184	CLM_3184	pyrR	pyrR	3202943	3203491	-	pyrimidine operon regulatory protein/uracil phosphoribosyltransferase	identified by match to protein family HMM PF00156	gene	gene3094	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3184
CLM_3185	CLM_3185		CLM_3185	3203819	3204874	-	putative membrane protein	identified by match to protein family HMM PF02698	gene	gene3095	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3185
CLM_3186	CLM_3186		CLM_3186	3205642	3206061	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047%3B match to protein family HMM PF03965	gene	gene3096	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3186
CLM_3187	CLM_3187		CLM_3187	3206079	3208337	-	putative excinuclease ABC%2C A subunit	identified by match to protein family HMM PF00005	gene	gene3097	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3187
CLM_3188	CLM_3188		CLM_3188	3208705	3209013	+	conserved hypothetical protein		gene	gene3098	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3188
CLM_3189	CLM_3189	ligT	ligT	3209125	3209652	-	2'-5' RNA ligase	identified by match to protein family HMM PF02834%3B match to protein family HMM TIGR02258	gene	gene3099	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3189
CLM_3190	CLM_3190		CLM_3190	3209825	3210223	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3100	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3190
CLM_3191	CLM_3191		CLM_3191	3210796	3212508	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3101	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3191
CLM_3193	CLM_3193		CLM_3193	3213229	3213666	-	MutT/NUDIX family protein	identified by match to protein family HMM PF00293	gene	gene3102	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3193
CLM_3194	CLM_3194		CLM_3194	3214290	3214757	+	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene3103	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3194
CLM_3195	CLM_3195		CLM_3195	3214889	3216898	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3104	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3195
CLM_3196	CLM_3196		CLM_3196	3216985	3219204	-	glycosyl hydrolase%2C family 18	identified by match to protein family HMM PF00704	gene	gene3105	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3196
CLM_3197	CLM_3197	nagB	nagB	3219433	3220167	-	glucosamine-6-phosphate deaminase	identified by match to protein family HMM PF01182%3B match to protein family HMM TIGR00502	gene	gene3106	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3197
CLM_3198	CLM_3198	nagA	nagA	3220250	3221392	-	N-acetylglucosamine-6-phosphate deacetylase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR00221	gene	gene3107	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3198
CLM_3199	CLM_3199		CLM_3199	3221553	3222287	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702	gene	gene3108	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3199
CLM_3200	CLM_3200		CLM_3200	3222582	3223439	+	transcriptional antiterminator%2C BglG family	identified by match to protein family HMM PF00874%3B match to protein family HMM PF03123	gene	gene3109	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3200
CLM_3201	CLM_3201	ptbA	ptbA	3223659	3224138	-	PTS system%2C glucose subfamily%2C IIA component	identified by match to protein family HMM PF00358%3B match to protein family HMM TIGR00830	gene	gene3110	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3201
CLM_3202	CLM_3202	nagE	nagE	3224832	3226274	+	PTS system%2C N-acetylglucosamine-specific%2C IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR01998	gene	gene3111	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3202
CLM_3203	CLM_3203		CLM_3203	3226753	3228123	+	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene3112	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3203
CLM_3204	CLM_3204		CLM_3204	3228258	3229178	-	SufBD protein	identified by match to protein family HMM PF01458	gene	gene3113	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3204
CLM_3205	CLM_3205		CLM_3205	3229180	3229899	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3114	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3205
CLM_3206	CLM_3206		CLM_3206	3229989	3230591	-	conserved hypothetical protein		gene	gene3115	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3206
CLM_3207	CLM_3207		CLM_3207	3231137	3231619	+	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene3116	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3207
CLM_3208	CLM_3208		CLM_3208	3231947	3233341	-	MATE efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943%3B match to protein family HMM TIGR00797	gene	gene3117	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3208
CLM_3209	CLM_3209		CLM_3209	3233590	3234789	-	metallo-beta-lactamase family protein/flavodoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM PF00753	gene	gene3118	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3209
CLM_3210	CLM_3210		CLM_3210	3234848	3236755	-	acyl-CoA dehydrogenase family protein/electron transfer protein	identified by match to protein family HMM PF00301%3B match to protein family HMM PF00441%3B match to protein family HMM PF00766%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene3119	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3210
CLM_3211	CLM_3211		CLM_3211	3237112	3237777	-	transposase ISLasa6a%2C IS3 family	identified by match to protein family HMM PF00665	gene	gene3120	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3211
CLM_3212	CLM_3212		CLM_3212	3237999	3238676	-	transposase	identified by match to protein family HMM PF01527	gene	gene3121	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3212
CLM_3214	CLM_3214		CLM_3214	3238906	3239562	+		PTS system sorbose subfamily IIB component%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF03830	pseudogene	gene3122	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3214
CLM_3215	CLM_3215		CLM_3215	3239599	3240405	+	PTS system sorbose-specific iic component	identified by match to protein family HMM PF03609	gene	gene3123	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3215
CLM_3216	CLM_3216		CLM_3216	3240392	3241336	+	PTS system%2C mannose/fructose/sorbose family%2C IID component	identified by match to protein family HMM PF03613%3B match to protein family HMM TIGR00828	gene	gene3124	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3216
CLM_3217	CLM_3217		CLM_3217	3241504	3241878	+	conserved hypothetical protein	identified by match to protein family HMM PF06115	gene	gene3125	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3217
CLM_3218	CLM_3218		CLM_3218	3242454	3243170	+	CoA-transferase%2C A subunit	identified by match to protein family HMM PF01144%3B match to protein family HMM TIGR02429	gene	gene3126	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3218
CLM_3219	CLM_3219		CLM_3219	3243179	3243835	+	CoA-transferase%2C B subunit	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF01144%3B match to protein family HMM TIGR02428	gene	gene3127	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3219
CLM_3220	CLM_3220		CLM_3220	3244417	3244986	-	conserved hypothetical protein		gene	gene3128	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3220
CLM_3221	CLM_3221		CLM_3221	3245205	3245693	-	xanthine dehydrogenase family protein%2C iron-sulfur binding protein	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene3129	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3221
CLM_3222	CLM_3222		CLM_3222	3245698	3246528	-	xanthine dehydrogenase family protein%2C FAD-binding subunit	identified by match to protein family HMM PF00941	gene	gene3130	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3222
CLM_3223	CLM_3223		CLM_3223	3246525	3248855	-	xanthine dehydrogenase family protein%2C molybdopterin-binding subunit	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene3131	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3223
CLM_3224	CLM_3224		CLM_3224	3249037	3249981	+		glycosyl hydrolase%2C family 1%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00232	pseudogene	gene3132	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3224
CLM_3227	CLM_3227		CLM_3227	3250308	3251525	-	transporter%2C CPA2 family	identified by match to protein family HMM PF00999	gene	gene3133	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3227
CLM_3228	CLM_3228		CLM_3228	3251640	3252003	-		transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene3134	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3228
CLM_3229	CLM_3229		CLM_3229	3252643	3253314	-	HAD-superfamily hydrolase%2C subfamily IA	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509	gene	gene3135	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3229
CLM_3230	CLM_3230		CLM_3230	3253344	3253604	-	tfoX domain protein	identified by match to protein family HMM PF04994	gene	gene3136	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3230
CLM_3231	CLM_3231		CLM_3231	3254033	3254479	+	conserved hypothetical protein		gene	gene3137	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3231
CLM_3232	CLM_3232		CLM_3232	3254544	3254690	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3138	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3232
CLM_3233	CLM_3233		CLM_3233	3255396	3255851	-	prophage LambdaCh01%2C N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01510	gene	gene3139	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3233
CLM_3234	CLM_3234		CLM_3234	3256003	3256232	-		conserved hypothetical protein%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene3140	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3234
CLM_3235	CLM_3235		CLM_3235	3256254	3256475	-	conserved hypothetical protein		gene	gene3141	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3235
CLM_3236	CLM_3236		CLM_3236	3256888	3257922	-	florfenicol/chloramphenicol resistance protein	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048	gene	gene3142	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3236
CLM_3237	CLM_3237		CLM_3237	3258085	3259563	-	drug resistance ABC transporter%2C RA2 family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3143	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3237
CLM_3238	CLM_3238		CLM_3238	3260298	3260465	-	conserved hypothetical protein		gene	gene3144	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3238
CLM_3239	CLM_3239		CLM_3239	3261678	3262775	+	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene3145	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3239
CLM_3240	CLM_3240		CLM_3240	3263237	3263845	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene3146	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3240
CLM_3241	CLM_3241		CLM_3241	3263968	3264510	+	ribosomal protein L29		gene	gene3147	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3241
CLM_3242	CLM_3242		CLM_3242	3264659	3265198	-	conjugative transposon protein		gene	gene3148	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3242
CLM_3243	CLM_3243		CLM_3243	3265188	3265373	-	NLP/P60 family protein		gene	gene3149	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3243
CLM_3244	CLM_3244		CLM_3244	3265532	3266236	-	conserved hypothetical protein		gene	gene3150	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3244
CLM_3245	CLM_3245		CLM_3245	3266283	3267059	-	helix-turn-helix- domain containing protein%2C AraC type	identified by match to protein family HMM PF00165	gene	gene3151	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3245
CLM_3246	CLM_3246		CLM_3246	3267034	3267216	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3152	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3246
CLM_3247	CLM_3247		CLM_3247	3267350	3267889	-	acetyltransferase	identified by match to protein family HMM PF00583	gene	gene3153	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3247
CLM_3248	CLM_3248		CLM_3248	3267903	3268394	-	transcriptional regulator%2C TetR family		gene	gene3154	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3248
CLM_3249	CLM_3249		CLM_3249	3269040	3270305	-	peptidase%2C family S8/S53		gene	gene3155	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3249
CLM_3250	CLM_3250		CLM_3250	3270321	3270572	-	conserved hypothetical protein		gene	gene3156	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3250
CLM_3251	CLM_3251		CLM_3251	3270585	3271715	-	conserved hypothetical protein		gene	gene3157	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3251
CLM_3252	CLM_3252		CLM_3252	3271746	3273179	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3158	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3252
CLM_3253	CLM_3253		CLM_3253	3273245	3273427	-	conserved hypothetical protein		gene	gene3159	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3253
CLM_3254	CLM_3254		CLM_3254	3273537	3275234	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF02463	gene	gene3160	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3254
CLM_3255	CLM_3255	rumA	rumA	3275575	3276927	-	23S rRNA (uracil-5-)-methyltransferase RumA	identified by match to protein family HMM PF01938%3B match to protein family HMM PF02475%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479	gene	gene3161	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3255
CLM_3256	CLM_3256		CLM_3256	3277214	3277660	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3162	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3256
CLM_3257	CLM_3257		CLM_3257	3277991	3279850	+	sulfatase family protein	identified by match to protein family HMM PF00884	gene	gene3163	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3257
CLM_3258	CLM_3258		CLM_3258	3279876	3280628	+	putative membrane protein	identified by match to protein family HMM PF01925	gene	gene3164	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3258
CLM_3259	CLM_3259	ribH	ribH	3281038	3281502	-	6%2C7-dimethyl-8-ribityllumazine synthase	identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114	gene	gene3165	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3259
CLM_3260	CLM_3260	ribAB	ribAB	3281534	3282739	-	bifunctional riboflavin biosynthesis protein RibAB	identified by match to protein family HMM PF00925%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00505%3B match to protein family HMM TIGR00506	gene	gene3166	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3260
CLM_3261	CLM_3261	ribE	ribE	3283047	3283733	-	riboflavin synthase%2C alpha subunit	identified by match to protein family HMM PF00677%3B match to protein family HMM TIGR00187	gene	gene3167	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3261
CLM_3262	CLM_3262	ribD	ribD	3283714	3284811	-	riboflavin biosynthesis protein RibD	identified by match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326	gene	gene3168	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3262
CLM_3264	CLM_3264	pepD	pepD	3285215	3286651	-	aminoacyl-histidine dipeptidase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01893	gene	gene3169	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3264
CLM_3265	CLM_3265		CLM_3265	3287040	3287933	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene3170	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3265
CLM_3266	CLM_3266	mgtA	mgtA	3288124	3290769	-	magnesium-importing ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01524	gene	gene3171	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3266
CLM_3268	CLM_3268		CLM_3268	3291642	3292046	-	conserved hypothetical protein		gene	gene3172	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3268
CLM_3269	CLM_3269	purD	purD	3292373	3293614	-	phosphoribosylamine--glycine ligase	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02655%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877	gene	gene3173	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3269
CLM_3270	CLM_3270	purH	purH	3293763	3295262	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	identified by match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355	gene	gene3174	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3270
CLM_3271	CLM_3271	purN	purN	3295476	3296093	-	phosphoribosylglycinamide formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639	gene	gene3175	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3271
CLM_3272	CLM_3272	purM	purM	3296220	3297215	-	phosphoribosylformylglycinamidine cyclo-ligase	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878	gene	gene3176	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3272
CLM_3273	CLM_3273	purF	purF	3297276	3298724	-	amidophosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134	gene	gene3177	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3273
CLM_3274	CLM_3274	purC	purC	3298816	3299520	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	identified by match to protein family HMM PF01259%3B match to protein family HMM TIGR00081	gene	gene3178	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3274
CLM_3275	CLM_3275	purE	purE	3299520	3299999	-	phosphoribosylaminoimidazole carboxylase%2C catalytic subunit	identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162	gene	gene3179	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3275
CLM_3277	CLM_3277		CLM_3277	3300628	3303183	-	xanthine dehydrogenase family protein%2C molybdopterin-binding subunit	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01315%3B match to protein family HMM PF01799%3B match to protein family HMM PF02738%3B match to protein family HMM TIGR03311	gene	gene3180	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3277
CLM_3278	CLM_3278		CLM_3278	3303558	3304775	-	peptidase%2C M20/M25/M40 family	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR03320%3B match to protein family HMM TIGR03526	gene	gene3181	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3278
CLM_3279	CLM_3279		CLM_3279	3304801	3306129	-	amidohydrolase family protein	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR03314	gene	gene3182	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3279
CLM_3280	CLM_3280		CLM_3280	3306160	3309177	-	putative selenate reductase%2C YgfK subunit	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR03315	gene	gene3183	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3280
CLM_3281	CLM_3281		CLM_3281	3309213	3310409	-	aspartate/ornithine carbamoyltransferase family protein	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR03316	gene	gene3184	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3281
CLM_3282	CLM_3282	hydA	hydA	3310751	3312145	-	dihydropyrimidinase	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR02033	gene	gene3185	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3282
CLM_3283	CLM_3283		CLM_3283	3312195	3313601	-	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801%3B match to protein family HMM TIGR03173	gene	gene3186	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3283
CLM_3284	CLM_3284	dpaL	dpaL	3313623	3314834	-	diaminopropionate ammonia-lyase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01747%3B match to protein family HMM TIGR03528	gene	gene3187	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3284
CLM_3285	CLM_3285		CLM_3285	3315118	3316881	-	sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene3188	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3285
CLM_3286	CLM_3286		CLM_3286	3317245	3317982	+	conserved hypothetical protein TIGR03172	identified by match to protein family HMM TIGR03172	gene	gene3189	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3286
CLM_3287	CLM_3287		CLM_3287	3317997	3318611	+	molybdenum hydroxylase accessory protein%2C YgfJ family	identified by match to protein family HMM TIGR03310	gene	gene3190	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3287
CLM_3288	CLM_3288		CLM_3288	3318592	3319440	+	selenium-dependent molybdenum hydroxylase system protein%2C YqeB family	identified by match to protein family HMM TIGR03309	gene	gene3191	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3288
CLM_3289	CLM_3289		CLM_3289	3319422	3320231	+	putative xanthine dehydrogenase accessory factor	identified by match to protein family HMM PF02625	gene	gene3192	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3289
CLM_3290	CLM_3290		CLM_3290	3320257	3320802	+	conserved hypothetical protein		gene	gene3193	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3290
CLM_3291	CLM_3291		CLM_3291	3320799	3321767	+	iron chelate uptake ABC transporter%2C FeCT family%2C permease protein	identified by match to protein family HMM PF00950%3B match to protein family HMM PF01032	gene	gene3194	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3291
CLM_3292	CLM_3292		CLM_3292	3321764	3322558	+	iron chelate uptake ABC transporter%2C FeCT family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3195	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3292
CLM_3293	CLM_3293		CLM_3293	3322933	3323799	+	putative iron chelate uptake ABC transporter%2C solute-binding protein	identified by match to protein family HMM PF01497	gene	gene3196	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3293
CLM_3294	CLM_3294		CLM_3294	3323937	3324269	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3197	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3294
CLM_3295	CLM_3295		CLM_3295	3324397	3324969	+	lipase/acylhydrolase%2C GDSL family	identified by match to protein family HMM PF00657	gene	gene3198	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3295
CLM_3296	CLM_3296		CLM_3296	3325080	3325676	-	conserved hypothetical protein	identified by match to protein family HMM PF02698	gene	gene3199	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3296
CLM_3297	CLM_3297		CLM_3297	3326250	3327692	-	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860	gene	gene3200	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3297
CLM_3299	CLM_3299		CLM_3299	3328212	3329564	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene3201	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3299
CLM_3300	CLM_3300		CLM_3300	3330514	3332805	-	putative helicase		gene	gene3202	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3300
CLM_3301	CLM_3301	trmU	trmU	3333313	3334374	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF03054%3B match to protein family HMM TIGR00420	gene	gene3203	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3301
CLM_3302	CLM_3302		CLM_3302	3334547	3335155	-	chap domain containing protein	identified by match to protein family HMM PF05257	gene	gene3204	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3302
CLM_3303	CLM_3303		CLM_3303	3335561	3337192	-	peptidase%2C M20/M25/M40 family	identified by match to protein family HMM PF01546	gene	gene3205	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3303
CLM_3304	CLM_3304		CLM_3304	3337192	3337689	-	conserved hypothetical protein		gene	gene3206	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3304
CLM_3305	CLM_3305		CLM_3305	3338023	3339348	+	transporter%2C HlyC/CorC family	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471	gene	gene3207	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3305
CLM_3306	CLM_3306		CLM_3306	3339701	3339991	-	conserved hypothetical protein	identified by match to protein family HMM PF01910	gene	gene3208	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3306
CLM_3307	CLM_3307	thiC	thiC	3340010	3341323	-	thiamine biosynthesis protein ThiC	identified by match to protein family HMM PF01964%3B match to protein family HMM TIGR00190	gene	gene3209	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3307
CLM_3308	CLM_3308	purF	purF	3341534	3342910	-	amidophosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134	gene	gene3210	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3308
CLM_3310	CLM_3310		CLM_3310	3343173	3343454	-	conserved hypothetical protein	identified by match to protein family HMM PF04456	gene	gene3211	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3310
CLM_3311	CLM_3311		CLM_3311	3343510	3344199	-	putative membrane protein		gene	gene3212	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3311
CLM_3312	CLM_3312		CLM_3312	3344201	3344374	-	putative membrane protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene3213	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3312
CLM_3313	CLM_3313		CLM_3313	3344479	3344850	-	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene3214	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3313
CLM_3314	CLM_3314		CLM_3314	3344857	3345714	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3215	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3314
CLM_3315	CLM_3315		CLM_3315	3345921	3346292	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392	gene	gene3216	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3315
CLM_3316	CLM_3316		CLM_3316	3346930	3347442	+	putative membrane protein		gene	gene3217	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3316
CLM_3317	CLM_3317		CLM_3317	3347713	3348456	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene3218	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3317
CLM_3318	CLM_3318		CLM_3318	3348562	3349239	+	cyclic nucleotide-binding protein	identified by match to protein family HMM PF00027	gene	gene3219	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3318
CLM_3319	CLM_3319		CLM_3319	3349328	3349771	+	putative cell wall hydrolase	identified by match to protein family HMM PF07486	gene	gene3220	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3319
CLM_3320	CLM_3320		CLM_3320	3349794	3350333	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3221	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3320
CLM_3321	CLM_3321		CLM_3321	3350597	3350941	-	conserved hypothetical protein	identified by match to protein family HMM PF07883	gene	gene3222	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3321
CLM_3322	CLM_3322		CLM_3322	3351060	3353219	-	putative phage infection protein	identified by match to protein family HMM PF01061%3B match to protein family HMM TIGR03061%3B match to protein family HMM TIGR03062	gene	gene3223	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3322
CLM_3323	CLM_3323		CLM_3323	3353528	3354280	-	glycerophosphoryl diester phosphodiesterase family protein	identified by match to protein family HMM PF03009	gene	gene3224	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3323
CLM_3324	CLM_3324		CLM_3324	3354660	3355622	-	TPR domain protein		gene	gene3225	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3324
CLM_3325	CLM_3325		CLM_3325	3356099	3357352	+	decarboxylase family protein	identified by match to protein family HMM PF00282	gene	gene3226	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3325
CLM_3326	CLM_3326		CLM_3326	3357443	3358762	-	CBS/transporter-associated domain protein	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471	gene	gene3227	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3326
CLM_3327	CLM_3327		CLM_3327	3358994	3359295	-	Bacterial RNase P class A		gene	gene3228	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3327
CLM_3328	CLM_3328		CLM_3328	3359405	3360139	-	conserved hypothetical protein	identified by match to protein family HMM PF02591	gene	gene3229	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3328
CLM_3329	CLM_3329		CLM_3329	3360278	3361081	-	conserved hypothetical protein TIGR00486	identified by match to protein family HMM PF01784%3B match to protein family HMM TIGR00486	gene	gene3230	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3329
CLM_3330	CLM_3330		CLM_3330	3361072	3361761	-	conserved hypothetical protein	identified by match to protein family HMM PF04816	gene	gene3231	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3330
CLM_3331	CLM_3331		CLM_3331	3361837	3362724	-	putative membrane protein		gene	gene3232	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3331
CLM_3332	CLM_3332	rpoD	rpoD	3362799	3363884	-	RNA polymerase sigma factor RpoD	identified by match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF04967%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937	gene	gene3233	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3332
CLM_3333	CLM_3333	dnaG	dnaG	3363909	3365681	-	DNA primase	identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM PF08275%3B match to protein family HMM TIGR01391	gene	gene3234	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3333
CLM_3334	CLM_3334		CLM_3334	3365964	3366992	-	deoxynucleotide triphosphohydrolase family protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR01353	gene	gene3235	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3334
CLM_3335	CLM_3335		CLM_3335	3367134	3368204	+	spore coat protein homolog	identified by match to protein family HMM TIGR02906	gene	gene3236	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3335
CLM_3336	CLM_3336	ppdK	ppdK	3368257	3370890	-	pyruvate%2C phosphate dikinase	identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01828	gene	gene3237	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3336
CLM_3337	CLM_3337		CLM_3337	3370970	3371611	-	CBS domain protein	identified by match to protein family HMM PF00571%3B match to protein family HMM PF08279	gene	gene3238	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3337
CLM_3338	CLM_3338		CLM_3338	3372128	3372748	-	UBA/TS-N domain protein	identified by match to protein family HMM PF00627	gene	gene3239	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3338
CLM_3339	CLM_3339		CLM_3339	3372751	3373128	-		DNA repair protein RecO%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated	pseudogene	gene3240	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3339
CLM_3340	CLM_3340	era	era	3373516	3374406	-	GTP-binding protein Era	identified by match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436	gene	gene3241	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3340
CLM_3341	CLM_3341	cdd	cdd	3374422	3374820	-	cytidine deaminase	identified by match to protein family HMM PF00383%3B match to protein family HMM TIGR01354	gene	gene3242	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3341
CLM_3342	CLM_3342		CLM_3342	3374904	3375602	-	diacylglycerol kinase/PAP2 family protein	identified by match to protein family HMM PF01219%3B match to protein family HMM PF01569	gene	gene3243	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3342
CLM_3343	CLM_3343		CLM_3343	3375643	3376143	-	conserved hypothetical protein TIGR00043	identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043	gene	gene3244	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3343
CLM_3344	CLM_3344		CLM_3344	3376140	3378227	-	putative hydrolase	identified by match to protein family HMM PF01966%3B match to protein family HMM PF07697%3B match to protein family HMM PF07698%3B match to protein family HMM TIGR00277	gene	gene3245	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3344
CLM_3345	CLM_3345		CLM_3345	3378250	3379410	-	sporulation protein YqfD	identified by match to protein family HMM PF06898%3B match to protein family HMM TIGR02876	gene	gene3246	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3345
CLM_3346	CLM_3346	yqfC	yqfC	3379400	3379696	-	sporulation protein YqfC	identified by match to protein family HMM PF07241%3B match to protein family HMM TIGR02856	gene	gene3247	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3346
CLM_3347	CLM_3347		CLM_3347	3379810	3380256	-	GatB/Yqey domain protein	identified by match to protein family HMM PF09424	gene	gene3248	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3347
CLM_3348	CLM_3348	rpsU	rpsU	3380299	3380475	-	ribosomal protein S21	identified by match to protein family HMM PF01165%3B match to protein family HMM TIGR00030	gene	gene3249	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3348
CLM_3349	CLM_3349		CLM_3349	3380612	3380956	-	HIT family protein	identified by match to protein family HMM PF01230	gene	gene3250	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3349
CLM_3350	CLM_3350		CLM_3350	3381013	3382311	-	RNA modification enzyme%2C MiaB family	identified by match to protein family HMM PF00919%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01579	gene	gene3251	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3350
CLM_3351	CLM_3351		CLM_3351	3382311	3383069	-	conserved hypothetical protein TIGR00046	identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046	gene	gene3252	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3351
CLM_3352	CLM_3352	prmA	prmA	3383167	3384105	-	ribosomal protein L11 methyltransferase	identified by match to protein family HMM PF02475%3B match to protein family HMM PF05175%3B match to protein family HMM PF06325%3B match to protein family HMM PF08241%3B match to protein family HMM TIGR00406	gene	gene3253	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3352
CLM_3353	CLM_3353	dnaJ	dnaJ	3384281	3385426	-	chaperone protein DnaJ	identified by match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349	gene	gene3254	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3353
CLM_3354	CLM_3354	dnaK	dnaK	3385569	3387440	-	chaperone protein DnaK	identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350	gene	gene3255	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3354
CLM_3355	CLM_3355	grpE	grpE	3387495	3388139	-	co-chaperone GrpE	identified by match to protein family HMM PF01025	gene	gene3256	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3355
CLM_3356	CLM_3356	hrcA	hrcA	3388166	3389197	-	heat-inducible transcription repressor HrcA	identified by match to protein family HMM PF01628%3B match to protein family HMM TIGR00331	gene	gene3257	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3356
CLM_3357	CLM_3357		CLM_3357	3389398	3390540	-	oxygen-independent coproporphyrinogen III oxidase	identified by similarity to SP:P54304%3B match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539	gene	gene3258	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3357
CLM_3358	CLM_3358	lepA	lepA	3390567	3392375	-	GTP-binding protein LepA	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393	gene	gene3259	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3358
CLM_3359	CLM_3359		CLM_3359	3392516	3392911	-	conserved hypothetical protein		gene	gene3260	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3359
CLM_3360	CLM_3360		CLM_3360	3392982	3394073	-	stage II sporulation protein	identified by match to protein family HMM PF07454%3B match to protein family HMM TIGR02867	gene	gene3261	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3360
CLM_3361	CLM_3361	gpr	gpr	3394258	3395232	-	spore protease	identified by match to protein family HMM PF03418%3B match to protein family HMM TIGR01441	gene	gene3262	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3361
CLM_3362	CLM_3362	rpsT	rpsT	3395442	3395708	+	ribosomal protein S20	identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029	gene	gene3263	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3362
CLM_3363	CLM_3363	holA	holA	3395743	3396774	-	DNA polymerase III%2C delta subunit	identified by match to protein family HMM PF06144%3B match to protein family HMM TIGR01128	gene	gene3264	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3363
CLM_3364	CLM_3364		CLM_3364	3396803	3398590	-	ComEC/Rec2 family protein	identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360	gene	gene3265	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3364
CLM_3365	CLM_3365		CLM_3365	3398602	3398832	-	conserved hypothetical protein		gene	gene3266	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3365
CLM_3366	CLM_3366		CLM_3366	3398937	3401531	-	putative cation transporting ATPase	identified by match to protein family HMM PF00122	gene	gene3267	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3366
CLM_3367	CLM_3367		CLM_3367	3402039	3403553	-	putative membrane protein	identified by match to protein family HMM PF07556	gene	gene3268	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3367
CLM_3369	CLM_3369		CLM_3369	3404403	3404499	-	tRNA-Sec		tRNA	gene3269	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3369
CLM_3370	CLM_3370	selB	selB	3405062	3406969	-	selenocysteine-specific translation elongation factor	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM PF09106%3B match to protein family HMM PF09107%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00475	gene	gene3270	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3370
CLM_3371	CLM_3371	selA	selA	3406988	3408376	-	L-seryl-tRNA selenium transferase	identified by match to protein family HMM PF01053%3B match to protein family HMM PF03841%3B match to protein family HMM TIGR00474	gene	gene3271	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3371
CLM_3372	CLM_3372	selD	selD	3408443	3409408	-	selenide%2C water dikinase%2C selenocysteine-containing	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00476	gene	gene3272	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3372
CLM_3373	CLM_3373		CLM_3373	3409628	3410236	-	putative comE operon protein 1	identified by match to protein family HMM PF00633%3B match to protein family HMM TIGR00426	gene	gene3273	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3373
CLM_3374	CLM_3374		CLM_3374	3410425	3411672	+	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF00768	gene	gene3274	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3374
CLM_3375	CLM_3375		CLM_3375	3411780	3412682	-	pseudouridine synthase%2C RluA family	identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR00005	gene	gene3275	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3375
CLM_3376	CLM_3376		CLM_3376	3413008	3413388	-	putative endoribonuclease L-PSP	identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004	gene	gene3276	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3376
CLM_3377	CLM_3377		CLM_3377	3413404	3414678	-	putative cell envelope-related function transcriptional attenuator	identified by match to protein family HMM PF03816%3B match to protein family HMM TIGR00350	gene	gene3277	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3377
CLM_3378	CLM_3378		CLM_3378	3414689	3415258	-	HDIG domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277%3B match to protein family HMM TIGR00488	gene	gene3278	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3378
CLM_3379	CLM_3379	nadD	nadD	3415341	3415946	-	nicotinate nucleotide adenylyltransferase	identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482	gene	gene3279	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3379
CLM_3380	CLM_3380		CLM_3380	3416189	3416482	-	putative RNA-binding protein	identified by match to protein family HMM PF01985%3B match to protein family HMM TIGR00253	gene	gene3280	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3380
CLM_3381	CLM_3381	obg	obg	3416509	3417783	-	Spo0B-associated GTP-binding protein	identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM PF09269%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR02729%3B match to protein family HMM TIGR03595	gene	gene3281	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3381
CLM_3382	CLM_3382	rpmA	rpmA	3418162	3418464	-	ribosomal protein L27	identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062	gene	gene3282	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3382
CLM_3383	CLM_3383		CLM_3383	3418467	3418793	-	conserved hypothetical protein	identified by match to protein family HMM PF04327	gene	gene3283	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3383
CLM_3384	CLM_3384	rplU	rplU	3418796	3419110	-	ribosomal protein L21	identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061	gene	gene3284	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3384
CLM_3386	CLM_3386		CLM_3386	3419234	3420673	-	ribonuclease%2C Rne/Rng family	identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757	gene	gene3285	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3386
CLM_3387	CLM_3387		CLM_3387	3420712	3421425	-	conserved hypothetical protein		gene	gene3286	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3387
CLM_3388	CLM_3388		CLM_3388	3421403	3423253	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3287	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3388
CLM_3389	CLM_3389		CLM_3389	3423366	3424217	-	putative metalloprotease	identified by match to protein family HMM PF02163	gene	gene3288	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3389
CLM_3390	CLM_3390		CLM_3390	3424272	3425057	-	peptidase%2C family M23/M37	identified by match to protein family HMM PF01551	gene	gene3289	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3390
CLM_3391	CLM_3391	rodA	rodA	3425377	3426495	-	rod shape-determining protein RodA	identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02210	gene	gene3290	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3391
CLM_3392	CLM_3392	minE	minE	3426594	3426857	-	cell division topological specificity factor MinE	identified by match to protein family HMM PF03776%3B match to protein family HMM TIGR01215	gene	gene3291	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3392
CLM_3393	CLM_3393	minD	minD	3426871	3427668	-	septum site-determining protein MinD	identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR01968	gene	gene3292	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3393
CLM_3394	CLM_3394	minC	minC	3427686	3428315	-	septum site-determining protein MinC	identified by match to protein family HMM PF03775%3B match to protein family HMM TIGR01222	gene	gene3293	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3394
CLM_3395	CLM_3395		CLM_3395	3428490	3431264	-	penicillin-binding protein	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717	gene	gene3294	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3395
CLM_3396	CLM_3396	mreD	mreD	3431284	3431775	-	rod shape-determining protein MreD	identified by match to protein family HMM PF04093%3B match to protein family HMM TIGR03426	gene	gene3295	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3396
CLM_3397	CLM_3397	mreC	mreC	3431786	3432643	-	rod shape-determining protein MreC	identified by match to protein family HMM PF04085%3B match to protein family HMM TIGR00219	gene	gene3296	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3397
CLM_3398	CLM_3398		CLM_3398	3432650	3433660	-	rod shape-determining protein MreB	identified by match to protein family HMM PF02491%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904	gene	gene3297	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3398
CLM_3399	CLM_3399		CLM_3399	3433689	3434375	-	DNA repair protein%2C RadC family	identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608	gene	gene3298	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3399
CLM_3400	CLM_3400	maf	maf	3434390	3434974	-	septum formation protein Maf	identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172	gene	gene3299	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3400
CLM_3401	CLM_3401		CLM_3401	3434990	3435247	-	conserved hypothetical protein		gene	gene3300	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3401
CLM_3402	CLM_3402		CLM_3402	3435357	3436058	-	conserved hypothetical protein		gene	gene3301	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3402
CLM_3403	CLM_3403		CLM_3403	3436284	3436823	-	conserved hypothetical protein		gene	gene3302	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3403
CLM_3404	CLM_3404		CLM_3404	3437206	3437760	+	conserved domain protein	identified by match to protein family HMM PF02567	gene	gene3303	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3404
CLM_3405	CLM_3405	pheB	pheB	3437819	3438256	-	ACT domain protein pheB		gene	gene3304	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3405
CLM_3406	CLM_3406		CLM_3406	3438313	3438447	-	conserved hypothetical protein		gene	gene3305	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3406
CLM_3407	CLM_3407		CLM_3407	3438437	3438629	-	6S / SsrS RNA		ncRNA	gene3306	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3407
CLM_3408	CLM_3408		CLM_3408	3438812	3438896	-	tRNA-Leu		tRNA	gene3307	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3408
CLM_3409	CLM_3409		CLM_3409	3438991	3439536	-	transglycosylase SLT domain protein	identified by match to protein family HMM PF01464	gene	gene3308	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3409
CLM_3410	CLM_3410	coaE	coaE	3439554	3440192	-	dephospho-CoA kinase	identified by match to protein family HMM PF01121%3B match to protein family HMM TIGR00152	gene	gene3309	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3410
CLM_3411	CLM_3411	polA	polA	3440204	3442831	-	DNA polymerase I	identified by match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593	gene	gene3310	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3411
CLM_3412	CLM_3412	aroC	aroC	3442849	3443973	-	chorismate synthase	identified by match to protein family HMM PF01264%3B match to protein family HMM TIGR00033	gene	gene3311	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3412
CLM_3413	CLM_3413		CLM_3413	3444372	3445151	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF08239	gene	gene3312	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3413
CLM_3414	CLM_3414		CLM_3414	3445298	3445492	-	conserved hypothetical protein		gene	gene3313	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3414
CLM_3415	CLM_3415		CLM_3415	3445511	3445765	-	conserved hypothetical protein		gene	gene3314	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3415
CLM_3416	CLM_3416		CLM_3416	3445917	3446726	-	contains cell adhesion domain protein		gene	gene3315	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3416
CLM_3417	CLM_3417		CLM_3417	3446778	3448121	-	contains cell adhesion domain protein		gene	gene3316	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3417
CLM_3418	CLM_3418		CLM_3418	3448135	3449055	-		contains cell adhesion domain%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene3317	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3418
CLM_3419	CLM_3419		CLM_3419	3449057	3449764	-	contains cell adhesion domain protein	identified by similarity to GB:ABS41377.1	gene	gene3318	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3419
CLM_3420	CLM_3420		CLM_3420	3450034	3450840	-	conserved domain protein	identified by similarity to GB:AAO35690.1	gene	gene3319	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3420
CLM_3421	CLM_3421		CLM_3421	3450894	3451682	-	conserved domain protein	identified by similarity to GB:AAO35690.1	gene	gene3320	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3421
CLM_3422	CLM_3422		CLM_3422	3451696	3452703	-	contains cell adhesion domain protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF02210	gene	gene3321	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3422
CLM_3423	CLM_3423		CLM_3423	3452706	3453488	-	conserved hypothetical protein		gene	gene3322	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3423
CLM_3424	CLM_3424		CLM_3424	3453579	3454664	-	conserved hypothetical protein		gene	gene3323	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3424
CLM_3425	CLM_3425		CLM_3425	3454676	3455674	-	conserved hypothetical protein		gene	gene3324	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3425
CLM_3426	CLM_3426		CLM_3426	3455686	3455940	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3325	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3426
CLM_3427	CLM_3427		CLM_3427	3455946	3457841	-	conserved hypothetical protein		gene	gene3326	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3427
CLM_3428	CLM_3428		CLM_3428	3457856	3459091	-	conserved hypothetical protein		gene	gene3327	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3428
CLM_3429	CLM_3429		CLM_3429	3459114	3460091	-	conserved hypothetical protein		gene	gene3328	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3429
CLM_3430	CLM_3430		CLM_3430	3460093	3461442	-	conserved domain protein	identified by match to protein family HMM PF00656	gene	gene3329	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3430
CLM_3431	CLM_3431		CLM_3431	3461457	3461798	-	conserved hypothetical protein		gene	gene3330	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3431
CLM_3432	CLM_3432		CLM_3432	3461811	3462896	-	conserved hypothetical protein		gene	gene3331	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3432
CLM_3433	CLM_3433		CLM_3433	3462883	3463317	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3332	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3433
CLM_3434	CLM_3434		CLM_3434	3463330	3464871	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3333	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3434
CLM_3435	CLM_3435		CLM_3435	3465056	3465223	-	conserved hypothetical protein		gene	gene3334	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3435
CLM_3436	CLM_3436		CLM_3436	3465258	3465674	-	conserved hypothetical protein		gene	gene3335	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3436
CLM_3437	CLM_3437		CLM_3437	3465689	3466576	-	conserved hypothetical protein		gene	gene3336	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3437
CLM_3438	CLM_3438		CLM_3438	3466581	3467000	-	conserved hypothetical protein		gene	gene3337	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3438
CLM_3439	CLM_3439		CLM_3439	3467006	3467353	-	conserved hypothetical protein		gene	gene3338	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3439
CLM_3440	CLM_3440		CLM_3440	3467358	3467723	-	conserved hypothetical protein		gene	gene3339	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3440
CLM_3441	CLM_3441		CLM_3441	3467723	3468007	-	conserved hypothetical protein		gene	gene3340	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3441
CLM_3442	CLM_3442		CLM_3442	3468674	3469195	-	conserved hypothetical protein		gene	gene3341	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3442
CLM_3443	CLM_3443		CLM_3443	3469308	3469628	-	conserved domain protein		gene	gene3342	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3443
CLM_3444	CLM_3444		CLM_3444	3469685	3470485	-	putative DNA replication protein		gene	gene3343	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3444
CLM_3445	CLM_3445		CLM_3445	3470475	3471380	-	putative phage replisome organizer	identified by match to protein family HMM PF09681%3B match to protein family HMM TIGR01714	gene	gene3344	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3445
CLM_3446	CLM_3446		CLM_3446	3471474	3471686	-	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene3345	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3446
CLM_3447	CLM_3447		CLM_3447	3471748	3471957	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene3346	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3447
CLM_3448	CLM_3448		CLM_3448	3472149	3472559	+	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene3347	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3448
CLM_3449	CLM_3449		CLM_3449	3472861	3473010	+	conserved hypothetical protein		gene	gene3348	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3449
CLM_3450	CLM_3450		CLM_3450	3473562	3473650	-	tRNA-Leu		tRNA	gene3349	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3450
CLM_3451	CLM_3451		CLM_3451	3474078	3475565	+	alginate O-acetyltransferase AlgI	identified by similarity to SP:Q51392%3B match to protein family HMM PF03062	gene	gene3350	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3451
CLM_3452	CLM_3452		CLM_3452	3475578	3477029	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3351	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3452
CLM_3453	CLM_3453		CLM_3453	3477196	3477399	-	small%2C acid-soluble spore protein	identified by match to protein family HMM PF00269	gene	gene3352	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3453
CLM_3454	CLM_3454		CLM_3454	3477563	3477703	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3353	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3454
CLM_3455	CLM_3455		CLM_3455	3477943	3478062	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3354	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3455
CLM_3456	CLM_3456		CLM_3456	3478119	3478409	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3355	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3456
CLM_3457	CLM_3457		CLM_3457	3478550	3478678	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3356	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3457
CLM_3458	CLM_3458		CLM_3458	3478851	3479279	+	sigma-E factor regulator%2C RseC/MucC family	identified by match to protein family HMM PF04246	gene	gene3357	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3458
CLM_3459	CLM_3459	aspS	aspS	3479314	3481095	-	aspartate--tRNA ligase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459	gene	gene3358	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3459
CLM_3460	CLM_3460	hisS	hisS	3481135	3482382	-	histidine--tRNA ligase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442	gene	gene3359	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3460
CLM_3461	CLM_3461		CLM_3461	3482401	3483831	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3360	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3461
CLM_3462	CLM_3462		CLM_3462	3483869	3484468	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene3361	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3462
CLM_3463	CLM_3463	dtd	dtd	3484529	3484978	-	D-tyrosyl-tRNA(Tyr) deacylase	identified by match to protein family HMM PF02580%3B match to protein family HMM TIGR00256	gene	gene3362	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3463
CLM_3464	CLM_3464	relA	relA	3485021	3487192	-	GTP pyrophosphokinase	identified by match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691	gene	gene3363	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3464
CLM_3465	CLM_3465	apt	apt	3487317	3487835	-	adenine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01090	gene	gene3364	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3465
CLM_3466	CLM_3466		CLM_3466	3487944	3488822	-	DHH domain protein	identified by match to protein family HMM PF01368	gene	gene3365	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3466
CLM_3467	CLM_3467	secF	secF	3489051	3489914	-	protein-export membrane protein SecF	identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966	gene	gene3366	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3467
CLM_3468	CLM_3468	secD	secD	3489916	3491184	-	protein-export membrane protein SecD	identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129	gene	gene3367	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3468
CLM_3469	CLM_3469		CLM_3469	3491278	3492645	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3368	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3469
CLM_3470	CLM_3470		CLM_3470	3492802	3492939	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3369	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3470
CLM_3471	CLM_3471		CLM_3471	3493029	3493397	-	conserved hypothetical protein		gene	gene3370	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3471
CLM_3472	CLM_3472	yajC	yajC	3493452	3493787	-	preprotein translocase%2C YajC subunit	identified by match to protein family HMM PF02699%3B match to protein family HMM TIGR00739	gene	gene3371	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3472
CLM_3473	CLM_3473	tgt	tgt	3493967	3495097	-	tRNA-guanine transglycosylase	identified by match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449	gene	gene3372	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3473
CLM_3474	CLM_3474	queA	queA	3495153	3496178	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	identified by match to protein family HMM PF02547%3B match to protein family HMM TIGR00113	gene	gene3373	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3474
CLM_3475	CLM_3475	ruvB	ruvB	3496212	3497240	-	Holliday junction DNA helicase RuvB	identified by similarity to SP:O32055%3B match to protein family HMM PF00004%3B match to protein family HMM PF00308%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00635	gene	gene3374	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3475
CLM_3476	CLM_3476	ruvA	ruvA	3497260	3497853	-	Holliday junction DNA helicase RuvA	identified by match to protein family HMM PF01330%3B match to protein family HMM PF07499%3B match to protein family HMM TIGR00084	gene	gene3375	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3476
CLM_3477	CLM_3477		CLM_3477	3498035	3498646	-	conserved hypothetical protein		gene	gene3376	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3477
CLM_3478	CLM_3478		CLM_3478	3499024	3499764	-	conserved hypothetical protein TIGR01033	identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033	gene	gene3377	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3478
CLM_3479	CLM_3479		CLM_3479	3499915	3500565	-	conserved hypothetical protein TIGR00257	identified by match to protein family HMM PF01205%3B match to protein family HMM PF09186%3B match to protein family HMM TIGR00257	gene	gene3378	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3479
CLM_3480	CLM_3480		CLM_3480	3500581	3501243	-	PBS lyase HEAT-like repeat protein	identified by match to protein family HMM PF03130	gene	gene3379	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3480
CLM_3481	CLM_3481		CLM_3481	3501331	3502749	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene3380	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3481
CLM_3482	CLM_3482		CLM_3482	3503034	3503927	-	nucleotidyltransferase domain protein	identified by match to protein family HMM PF01909	gene	gene3381	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3482
CLM_3483	CLM_3483		CLM_3483	3504077	3504298	-	conserved hypothetical protein		gene	gene3382	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3483
CLM_3484	CLM_3484		CLM_3484	3504471	3504629	-	rubredoxin	identified by match to protein family HMM PF00301	gene	gene3383	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3484
CLM_3485	CLM_3485		CLM_3485	3504758	3506542	-	GTP-binding protein	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR03156	gene	gene3384	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3485
CLM_3486	CLM_3486	hpt	hpt	3506684	3507208	+	hypoxanthine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203	gene	gene3385	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3486
CLM_3487	CLM_3487		CLM_3487	3507245	3507799	-	sporulation protein YunB	identified by match to protein family HMM PF09560%3B match to protein family HMM TIGR02832	gene	gene3386	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3487
CLM_3488	CLM_3488		CLM_3488	3508071	3510566	+	penicillin-binding protein%2C 1A family	identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074	gene	gene3387	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3488
CLM_3489	CLM_3489	spoVAE	spoVAE	3510596	3510952	-	stage V sporulation protein AE	identified by match to protein family HMM PF03862%3B match to protein family HMM TIGR02839	gene	gene3388	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3489
CLM_3490	CLM_3490	spoVAD	spoVAD	3510968	3511975	-	stage V sporulation protein AD	identified by match to protein family HMM PF07451%3B match to protein family HMM TIGR02845	gene	gene3389	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3490
CLM_3491	CLM_3491	spoVAC	spoVAC	3511998	3512453	-	stage V sporulation protein AC	identified by match to protein family HMM PF03862%3B match to protein family HMM TIGR02838	gene	gene3390	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3491
CLM_3492	CLM_3492	sigF	sigF	3512655	3513410	-	RNA polymerase sigma-F factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02885%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02980	gene	gene3391	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3492
CLM_3493	CLM_3493	spoIIAB	spoIIAB	3513429	3513851	-	anti-sigma F factor	identified by match to protein family HMM PF02518%3B match to protein family HMM TIGR01925	gene	gene3392	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3493
CLM_3494	CLM_3494	spoIIAA	spoIIAA	3513868	3514203	-	anti-sigma F factor antagonist	identified by match to protein family HMM PF01740%3B match to protein family HMM TIGR00377%3B match to protein family HMM TIGR02886	gene	gene3393	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3494
CLM_3495	CLM_3495		CLM_3495	3514304	3514474	+	spermidine synthase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene3394	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3495
CLM_3496	CLM_3496		CLM_3496	3514758	3516491	-	modification methylase family protein		gene	gene3395	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3496
CLM_3497	CLM_3497		CLM_3497	3516558	3517532	+	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522%3B match to protein family HMM TIGR02884	gene	gene3396	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3497
CLM_3498	CLM_3498		CLM_3498	3517623	3518339	-	glycosyl transferase%2C WecB/TagA/CpsF family	identified by match to protein family HMM PF03808%3B match to protein family HMM TIGR00696	gene	gene3397	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3498
CLM_3499	CLM_3499		CLM_3499	3518668	3519321	-	bacterial sugar transferase family protein	identified by match to protein family HMM PF02397	gene	gene3398	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3499
CLM_3500	CLM_3500		CLM_3500	3519332	3520756	-	transporter	identified by match to protein family HMM PF01943	gene	gene3399	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3500
CLM_3501	CLM_3501	mviN	mviN	3521154	3522710	-	integral membrane protein MviN	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943%3B match to protein family HMM PF03023%3B match to protein family HMM TIGR01695	gene	gene3400	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3501
CLM_3502	CLM_3502		CLM_3502	3522729	3523832	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene3401	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3502
CLM_3503	CLM_3503		CLM_3503	3523941	3525068	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene3402	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3503
CLM_3504	CLM_3504		CLM_3504	3525183	3526415	-	exopolysaccharide biosynthesis family protein	identified by match to protein family HMM PF04932	gene	gene3403	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3504
CLM_3505	CLM_3505		CLM_3505	3526493	3527719	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene3404	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3505
CLM_3506	CLM_3506		CLM_3506	3527738	3528796	-	UDP-N-acetylglucosamine 2-epimerase	identified by match to protein family HMM PF02350%3B match to protein family HMM TIGR00236	gene	gene3405	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3506
CLM_3507	CLM_3507		CLM_3507	3528796	3529890	-	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene3406	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3507
CLM_3508	CLM_3508		CLM_3508	3529913	3531016	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3407	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3508
CLM_3509	CLM_3509		CLM_3509	3531006	3532424	-	putative membrane protein		gene	gene3408	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3509
CLM_3510	CLM_3510		CLM_3510	3532439	3533533	-	putative internalin	identified by match to protein family HMM PF00560	gene	gene3409	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3510
CLM_3511	CLM_3511		CLM_3511	3533570	3534877	-	polysaccharide biosynthesis protein	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943	gene	gene3410	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3511
CLM_3512	CLM_3512		CLM_3512	3534908	3535654	-	putative acetyltransferase	identified by match to protein family HMM PF00132	gene	gene3411	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3512
CLM_3513	CLM_3513		CLM_3513	3535754	3536863	-	oxidoreductase%2C NAD-binding Rossmann fold family	identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894%3B match to protein family HMM PF03447	gene	gene3412	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3513
CLM_3514	CLM_3514		CLM_3514	3536927	3538243	-	UDP-glucose/GDP-mannose dehydrogenase family	identified by match to protein family HMM PF00984%3B match to protein family HMM PF03446%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026	gene	gene3413	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3514
CLM_3515	CLM_3515		CLM_3515	3538373	3540238	-	exopolysaccharide biosynthesis protein	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321	gene	gene3414	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3515
CLM_3516	CLM_3516		CLM_3516	3540418	3543309	-	putative N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF07495	gene	gene3415	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3516
CLM_3517	CLM_3517		CLM_3517	3543504	3546098	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01520%3B match to protein family HMM PF07495	gene	gene3416	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3517
CLM_3518	CLM_3518		CLM_3518	3546276	3549740	-	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01832%3B match to protein family HMM PF07495	gene	gene3417	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3518
CLM_3519	CLM_3519	galU	galU	3549839	3550735	-	UTP-glucose-1-phosphate uridylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01099	gene	gene3418	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3519
CLM_3520	CLM_3520		CLM_3520	3550785	3551861	-	TPR domain protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene3419	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3520
CLM_3521	CLM_3521		CLM_3521	3552006	3553733	-	phosphoglucomutase/phosphomannomutase family protein	identified by match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880	gene	gene3420	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3521
CLM_3522	CLM_3522		CLM_3522	3554374	3554910	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	identified by match to protein family HMM PF01386%3B match to protein family HMM TIGR00731	gene	gene3421	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3522
CLM_3523	CLM_3523		CLM_3523	3555117	3556577	+	Orn/Lys/Arg decarboxylase	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM PF01276%3B match to protein family HMM PF03711%3B match to protein family HMM PF05889	gene	gene3422	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3523
CLM_3524	CLM_3524		CLM_3524	3556763	3557596	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3423	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3524
CLM_3525	CLM_3525		CLM_3525	3557794	3558696	-	phosphate acetyl/butyryl transferase	identified by match to protein family HMM PF01515	gene	gene3424	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3525
CLM_3526	CLM_3526		CLM_3526	3559159	3560172	-	dehydrogenase%2C FMN-dependent	identified by match to protein family HMM PF01070%3B match to protein family HMM PF01180	gene	gene3425	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3526
CLM_3527	CLM_3527		CLM_3527	3560408	3560878	-	conserved hypothetical protein	identified by match to protein family HMM PF04463	gene	gene3426	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3527
CLM_3528	CLM_3528		CLM_3528	3561066	3563432	-	MutS2 family protein	identified by match to protein family HMM PF00488%3B match to protein family HMM PF01713%3B match to protein family HMM TIGR01069	gene	gene3427	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3528
CLM_3529	CLM_3529		CLM_3529	3563565	3565931	-	peptidase%2C U32 family	identified by match to protein family HMM PF01136	gene	gene3428	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3529
CLM_3530	CLM_3530		CLM_3530	3566508	3567380	-	conserved hypothetical protein		gene	gene3429	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3530
CLM_3531	CLM_3531		CLM_3531	3567585	3569360	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3430	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3531
CLM_3532	CLM_3532		CLM_3532	3569531	3569683	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by glimmer%3B putative	gene	gene3431	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3532
CLM_3533	CLM_3533		CLM_3533	3569863	3570129	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3432	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3533
CLM_3535	CLM_3535		CLM_3535	3570503	3570961	+	glycosyl transferase%2C group 2 family		gene	gene3433	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3535
CLM_3536	CLM_3536		CLM_3536	3570983	3571573	-	conserved hypothetical protein	identified by match to protein family HMM PF05164	gene	gene3434	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3536
CLM_3537	CLM_3537	pheT	pheT	3571778	3574159	-	phenylalanyl-tRNA synthetase%2C beta subunit	identified by match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472	gene	gene3435	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3537
CLM_3538	CLM_3538	pheS	pheS	3574320	3575339	-	phenylalanyl-tRNA synthetase%2C alpha subunit	identified by match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468	gene	gene3436	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3538
CLM_3539	CLM_3539		CLM_3539	3575687	3576466	-	RNA methyltransferase%2C TrmH family	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032	gene	gene3437	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3539
CLM_3540	CLM_3540		CLM_3540	3576557	3577219	-	potassium uptake protein%2C TrkA family	identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254	gene	gene3438	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3540
CLM_3541	CLM_3541		CLM_3541	3577230	3578573	-	potassium uptake protein%2C TrkH family	identified by match to protein family HMM PF02386%3B match to protein family HMM TIGR00933	gene	gene3439	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3541
CLM_3542	CLM_3542	rplT	rplT	3578697	3579056	-	ribosomal protein L20	identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032	gene	gene3440	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3542
CLM_3543	CLM_3543	rpmI	rpmI	3579086	3579283	-	ribosomal protein L35	identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001	gene	gene3441	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3543
CLM_3544	CLM_3544	infC	infC	3579305	3579859	-	translation initiation factor IF-3	identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168	gene	gene3442	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3544
CLM_3546	CLM_3546	thrS	thrS	3580114	3582021	-	threonine--tRNA ligase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02824%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418	gene	gene3443	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3546
CLM_3547	CLM_3547		CLM_3547	3582369	3583268	-	putative sporulation protein YtxC	identified by match to protein family HMM PF08812%3B match to protein family HMM TIGR02834	gene	gene3444	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3547
CLM_3548	CLM_3548		CLM_3548	3583423	3584130	+	conserved hypothetical protein		gene	gene3445	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3548
CLM_3549	CLM_3549		CLM_3549	3584338	3585909	-	ABC transporter%2C permease protein		gene	gene3446	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3549
CLM_3550	CLM_3550		CLM_3550	3585911	3586606	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3447	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3550
CLM_3551	CLM_3551		CLM_3551	3586923	3586996	-	tRNA-Cys		tRNA	gene3448	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3551
CLM_3552	CLM_3552		CLM_3552	3587006	3587080	-	tRNA-Gly		tRNA	gene3449	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3552
CLM_3553	CLM_3553		CLM_3553	3587084	3587161	-	tRNA-Phe		tRNA	gene3450	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3553
CLM_3554	CLM_3554		CLM_3554	3587163	3587241	-	tRNA-Asp		tRNA	gene3451	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3554
CLM_3555	CLM_3555		CLM_3555	3587246	3587321	-	tRNA-Val		tRNA	gene3452	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3555
CLM_3556	CLM_3556	hsp33	hsp33	3587386	3588276	-	33 kDa chaperonin	identified by match to protein family HMM PF01430	gene	gene3453	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3556
CLM_3557	CLM_3557		CLM_3557	3588314	3589054	-	conserved hypothetical protein	identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242	gene	gene3454	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3557
CLM_3558	CLM_3558		CLM_3558	3589140	3589412	-	small acid-soluble spore protein		gene	gene3455	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3558
CLM_3559	CLM_3559		CLM_3559	3589722	3590681	-	oligopeptide/dipeptide ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene3456	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3559
CLM_3560	CLM_3560		CLM_3560	3590681	3591700	-	oligopeptide/dipeptide ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727	gene	gene3457	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3560
CLM_3561	CLM_3561		CLM_3561	3591715	3592632	-	oligopeptide/dipeptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3458	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3561
CLM_3562	CLM_3562		CLM_3562	3592648	3593577	-	oligopeptide/dipeptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3459	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3562
CLM_3563	CLM_3563		CLM_3563	3593658	3595340	-	oligopeptide/dipeptide ABC transporter%2C oligopeptide/dipeptide-binding protein	identified by match to protein family HMM PF00496	gene	gene3460	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3563
CLM_3564	CLM_3564	asd	asd	3595824	3596816	+	aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01296	gene	gene3461	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3564
CLM_3565	CLM_3565	dapA	dapA	3596839	3597717	+	dihydrodipicolinate synthase	identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674	gene	gene3462	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3565
CLM_3566	CLM_3566	dapB	dapB	3597940	3598695	+	dihydrodipicolinate reductase	identified by match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036	gene	gene3463	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3566
CLM_3567	CLM_3567		CLM_3567	3599009	3600172	-	aminotransferase%2C classes I and II	identified by similarity to SP:P16524%3B match to protein family HMM PF00155	gene	gene3464	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3567
CLM_3568	CLM_3568		CLM_3568	3600430	3601140	+	putative 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM PF08503%3B match to protein family HMM TIGR03532	gene	gene3465	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3568
CLM_3569	CLM_3569		CLM_3569	3601256	3601957	-	single-strand binding domain protein	identified by match to protein family HMM PF00436	gene	gene3466	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3569
CLM_3570	CLM_3570		CLM_3570	3602035	3602532	-	conserved hypothetical protein		gene	gene3467	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3570
CLM_3571	CLM_3571		CLM_3571	3602731	3603483	-	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522%3B match to protein family HMM TIGR02764	gene	gene3468	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3571
CLM_3572	CLM_3572		CLM_3572	3603647	3604174	+	conserved hypothetical protein		gene	gene3469	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3572
CLM_3573	CLM_3573		CLM_3573	3604177	3605061	-	conserved hypothetical protein		gene	gene3470	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3573
CLM_3574	CLM_3574		CLM_3574	3605201	3605461	+	conserved hypothetical protein		gene	gene3471	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3574
CLM_3575	CLM_3575	folC	folC	3605470	3606759	-	FolC bifunctional protein	identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01499	gene	gene3472	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3575
CLM_3576	CLM_3576	valS	valS	3607205	3609850	-	valine--tRNA ligase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00422	gene	gene3473	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3576
CLM_3577	CLM_3577		CLM_3577	3609871	3610377	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene3474	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3577
CLM_3578	CLM_3578		CLM_3578	3610831	3611586	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3475	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3578
CLM_3579	CLM_3579		CLM_3579	3611589	3614084	-	putative ABC transporter%2C permease protein		gene	gene3476	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3579
CLM_3580	CLM_3580		CLM_3580	3614506	3615534	+	putative ABC transporter%2C substrate-binding protein	identified by match to protein family HMM PF09084	gene	gene3477	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3580
CLM_3581	CLM_3581		CLM_3581	3615895	3620187	-	putative CoA-substrate-specific enzyme activase	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene3478	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3581
CLM_3582	CLM_3582		CLM_3582	3620509	3621270	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3479	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3582
CLM_3583	CLM_3583		CLM_3583	3621267	3622070	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3480	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3583
CLM_3584	CLM_3584		CLM_3584	3622214	3622561	+	TPR domain protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720	gene	gene3481	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3584
CLM_3585	CLM_3585		CLM_3585	3622684	3623859	-	transglutaminase domain protein	identified by match to protein family HMM PF01841	gene	gene3482	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3585
CLM_3586	CLM_3586	recX	recX	3623884	3624819	-	regulatory protein RecX	identified by match to protein family HMM PF02631	gene	gene3483	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3586
CLM_3587	CLM_3587		CLM_3587	3624841	3626070	-	peptidase%2C M16 family	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene3484	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3587
CLM_3589	CLM_3589		CLM_3589	3626291	3626794	+	putative membrane protein	identified by match to protein family HMM PF06177	gene	gene3485	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3589
CLM_3590	CLM_3590		CLM_3590	3626832	3627419	+	putative flavin reductase	identified by match to protein family HMM PF01613	gene	gene3486	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3590
CLM_3591	CLM_3591		CLM_3591	3627477	3628172	+	ErfK/YbiS/YcfS/YnhG family protein	identified by match to protein family HMM PF01471%3B match to protein family HMM PF03734	gene	gene3487	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3591
CLM_3592	CLM_3592		CLM_3592	3628207	3629082	-	putative membrane protein		gene	gene3488	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3592
CLM_3593	CLM_3593		CLM_3593	3629124	3629402	-	conserved hypothetical protein	identified by match to protein family HMM PF06865	gene	gene3489	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3593
CLM_3594	CLM_3594	proC	proC	3629531	3630337	-	pyrroline-5-carboxylate reductase	identified by match to protein family HMM PF03807%3B match to protein family HMM TIGR00112	gene	gene3490	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3594
CLM_3595	CLM_3595		CLM_3595	3630449	3632812	-	formate acetyltransferase	identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901	gene	gene3491	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3595
CLM_3596	CLM_3596		CLM_3596	3632815	3633720	-	glycyl-radical enzyme activating family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR02494	gene	gene3492	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3596
CLM_3597	CLM_3597		CLM_3597	3633772	3634341	-	DNA-binding protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene3493	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3597
CLM_3598	CLM_3598		CLM_3598	3634977	3635705	-	BRCT domain protein	identified by match to protein family HMM PF00533	gene	gene3494	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3598
CLM_3599	CLM_3599		CLM_3599	3635742	3636083	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3495	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3599
CLM_3600	CLM_3600		CLM_3600	3636095	3637831	-	von Willebrand factor type A domain protein	identified by match to protein family HMM PF00092	gene	gene3496	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3600
CLM_3601	CLM_3601		CLM_3601	3637854	3639182	-	ATPase%2C AAA family	identified by match to protein family HMM PF07728	gene	gene3497	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3601
CLM_3602	CLM_3602		CLM_3602	3639805	3640881	+	conserved hypothetical protein		gene	gene3498	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3602
CLM_3603	CLM_3603		CLM_3603	3640950	3642035	+	conserved hypothetical protein		gene	gene3499	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3603
CLM_3604	CLM_3604		CLM_3604	3642214	3642408	-	iron-sulfur cluster-binding protein		gene	gene3500	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3604
CLM_3605	CLM_3605		CLM_3605	3642651	3643544	+	conserved hypothetical protein		gene	gene3501	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3605
CLM_3606	CLM_3606		CLM_3606	3643547	3644644	+	conserved hypothetical protein	identified by similarity to GB:EDK33626.1	gene	gene3502	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3606
CLM_3607	CLM_3607		CLM_3607	3644625	3645599	+	putative CoA-substrate-specific enzyme activase	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene3503	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3607
CLM_3608	CLM_3608		CLM_3608	3645663	3647291	-	sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene3504	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3608
CLM_3609	CLM_3609		CLM_3609	3647649	3648656	-	electron transfer flavoprotein%2C alpha subunit/FixB family protein	identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene3505	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3609
CLM_3610	CLM_3610		CLM_3610	3648669	3649448	-	electron transfer flavoprotein%2C beta subunit/FixA family protein	identified by match to protein family HMM PF01012	gene	gene3506	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3610
CLM_3611	CLM_3611	bcd	bcd	3649460	3650599	-	butyryl-CoA dehydrogenase	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene3507	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3611
CLM_3612	CLM_3612		CLM_3612	3650793	3651971	-	thiolase	identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930	gene	gene3508	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3612
CLM_3613	CLM_3613	hbd	hbd	3651996	3652826	-	3-hydroxybutyryl-CoA dehydrogenase	identified by match to protein family HMM PF00725%3B match to protein family HMM PF02737	gene	gene3509	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3613
CLM_3614	CLM_3614	crt	crt	3652846	3653628	-	3-hydroxybutyryl-CoA dehydratase	identified by match to protein family HMM PF00378	gene	gene3510	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3614
CLM_3615	CLM_3615		CLM_3615	3654044	3654262	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3511	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3615
CLM_3616	CLM_3616		CLM_3616	3654306	3655403	-	GIY-YIG domain protein	identified by match to protein family HMM PF01541	gene	gene3512	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3616
CLM_3617	CLM_3617		CLM_3617	3655679	3656971	-	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860	gene	gene3513	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3617
CLM_3618	CLM_3618		CLM_3618	3657373	3658269	-	HDIG domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene3514	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3618
CLM_3619	CLM_3619		CLM_3619	3658337	3658489	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3515	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3619
CLM_3620	CLM_3620	lgt	lgt	3658877	3659641	-	prolipoprotein diacylglyceryl transferase	identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544	gene	gene3516	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3620
CLM_3621	CLM_3621		CLM_3621	3659850	3660314	-	phosphodiesterase%2C MJ0936 family	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00040	gene	gene3517	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3621
CLM_3622	CLM_3622		CLM_3622	3660357	3660722	-	conserved domain protein		gene	gene3518	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3622
CLM_3623	CLM_3623		CLM_3623	3660853	3661608	+	glycerophosphoryl diester phosphodiesterase family protein	identified by match to protein family HMM PF03009	gene	gene3519	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3623
CLM_3624	CLM_3624		CLM_3624	3661704	3663710	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene3520	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3624
CLM_3625	CLM_3625		CLM_3625	3663905	3664450	-	rubredoxin/rubrerythrin	identified by match to protein family HMM PF00301%3B match to protein family HMM PF02915	gene	gene3521	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3625
CLM_3626	CLM_3626	pflA	pflA	3665092	3665790	-	pyruvate formate-lyase activating enzyme	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR02493	gene	gene3522	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3626
CLM_3627	CLM_3627	pfl	pfl	3665970	3668198	-	formate acetyltransferase 1	identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01255	gene	gene3523	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3627
CLM_3628	CLM_3628		CLM_3628	3668711	3668962	-	conserved hypothetical protein		gene	gene3524	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3628
CLM_3629	CLM_3629		CLM_3629	3669339	3669908	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	identified by match to protein family HMM PF01386%3B match to protein family HMM TIGR00731	gene	gene3525	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3629
CLM_3630	CLM_3630		CLM_3630	3670075	3670689	-	putative lipoprotein		gene	gene3526	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3630
CLM_3631	CLM_3631		CLM_3631	3670915	3671343	+	transcriptional regulator%2C Fur family	identified by match to protein family HMM PF01475	gene	gene3527	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3631
CLM_3632	CLM_3632		CLM_3632	3671412	3672647	-	bacterial extracellular solute-binding protein	identified by match to protein family HMM PF01547	gene	gene3528	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3632
CLM_3633	CLM_3633		CLM_3633	3672748	3673683	+	conserved hypothetical protein		gene	gene3529	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3633
CLM_3634	CLM_3634		CLM_3634	3673843	3674799	-	conserved hypothetical protein	identified by match to protein family HMM PF08279	gene	gene3530	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3634
CLM_3635	CLM_3635		CLM_3635	3675014	3675436	-	conserved hypothetical protein		gene	gene3531	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3635
CLM_3636	CLM_3636		CLM_3636	3675491	3675736	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3532	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3636
CLM_3637	CLM_3637		CLM_3637	3675788	3676216	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3533	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3637
CLM_3638	CLM_3638		CLM_3638	3676435	3677160	-	CAAX amino terminal protease family protein	identified by match to protein family HMM PF02517	gene	gene3534	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3638
CLM_3639	CLM_3639	ysxC	ysxC	3677184	3677768	-	ribosome biogenesis GTP-binding protein YsxC	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR03598	gene	gene3535	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3639
CLM_3640	CLM_3640	lon	lon	3677783	3680104	-	endopeptidase LA	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763	gene	gene3536	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3640
CLM_3641	CLM_3641	lonB	lonB	3680242	3681921	-	ATP-dependent protease LonB	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01078%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02902	gene	gene3537	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3641
CLM_3642	CLM_3642	clpX	clpX	3682049	3683338	-	ATP-dependent Clp protease%2C ATP-binding subunit ClpX	identified by match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382	gene	gene3538	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3642
CLM_3643	CLM_3643	clpP_1	clpP_1	3683358	3683942	-	ATP-dependent Clp protease%2C proteolytic subunit ClpP	identified by match to protein family HMM PF00574%3B match to protein family HMM TIGR00493	gene	gene3539	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3643
CLM_3644	CLM_3644	tig	tig	3684068	3685360	-	trigger factor	identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115	gene	gene3540	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3644
CLM_3645	CLM_3645		CLM_3645	3685538	3686323	-	AP endonuclease%2C family 2	identified by match to protein family HMM PF01261	gene	gene3541	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3645
CLM_3646	CLM_3646		CLM_3646	3686430	3687242	-	conserved hypothetical protein		gene	gene3542	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3646
CLM_3647	CLM_3647	pyrE	pyrE	3687456	3688031	-	orotate phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01367	gene	gene3543	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3647
CLM_3648	CLM_3648	pyrD	pyrD	3688065	3688961	-	dihydroorotate oxidase	identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01037	gene	gene3544	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3648
CLM_3649	CLM_3649	pyrK	pyrK	3688961	3689716	-	dihydroorotate dehydrogenase%2C electron transfer subunit	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene3545	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3649
CLM_3650	CLM_3650	pyrF	pyrF	3689861	3690712	-	orotidine 5'-phosphate decarboxylase	identified by match to protein family HMM PF00215%3B match to protein family HMM TIGR02127	gene	gene3546	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3650
CLM_3651	CLM_3651	pyrC	pyrC	3690736	3691926	-	dihydroorotase%2C multifunctional complex type	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00857	gene	gene3547	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3651
CLM_3652	CLM_3652	pyrI	pyrI	3691948	3692388	-	aspartate carbamoyltransferase%2C regulatory subunit	identified by match to protein family HMM PF01948	gene	gene3548	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3652
CLM_3653	CLM_3653	pyrB	pyrB	3692390	3693313	-	aspartate carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670	gene	gene3549	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3653
CLM_3655	CLM_3655	hgdC_2	hgdC_2	3693568	3694326	-	(R)-hydroxyglutaryl-CoA dehydratase activator	identified by similarity to SP:P11568%3B match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene3550	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3655
CLM_3656	CLM_3656		CLM_3656	3694349	3694546	-	conserved hypothetical protein		gene	gene3551	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3656
CLM_3657	CLM_3657		CLM_3657	3694906	3696165	-	2-hydroxyglutaryl-CoA dehydratase%2C D-component	identified by match to protein family HMM PF06050	gene	gene3552	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3657
CLM_3658	CLM_3658		CLM_3658	3696294	3697442	-	2-hydroxyglutaryl-CoA dehydratase%2C D-component	identified by match to protein family HMM PF06050	gene	gene3553	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3658
CLM_3659	CLM_3659		CLM_3659	3697554	3697886	-	conserved hypothetical protein		gene	gene3554	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3659
CLM_3660	CLM_3660		CLM_3660	3698053	3698811	-	nitrate transport ATP-binding protein NrtD	identified by match to protein family HMM PF00005	gene	gene3555	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3660
CLM_3661	CLM_3661		CLM_3661	3698811	3698948	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3556	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3661
CLM_3662	CLM_3662		CLM_3662	3698988	3699629	-	ABC transporter%2C permease protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF00528	gene	gene3557	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3662
CLM_3663	CLM_3663		CLM_3663	3699578	3700114	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by glimmer%3B putative	gene	gene3558	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3663
CLM_3664	CLM_3664		CLM_3664	3700166	3700384	-	hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by glimmer%3B putative	gene	gene3559	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3664
CLM_3665	CLM_3665		CLM_3665	3700393	3700533	-	conserved hypothetical protein		gene	gene3560	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3665
CLM_3666	CLM_3666		CLM_3666	3700540	3701106	-	conserved domain protein		gene	gene3561	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3666
CLM_3667	CLM_3667		CLM_3667	3701134	3702234	-	putative lipoprotein		gene	gene3562	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3667
CLM_3668	CLM_3668		CLM_3668	3702252	3702716	-	putative lipoprotein		gene	gene3563	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3668
CLM_3669	CLM_3669		CLM_3669	3702732	3703823	-	putative permease	identified by match to protein family HMM PF03773	gene	gene3564	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3669
CLM_3670	CLM_3670		CLM_3670	3703823	3704083	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3565	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3670
CLM_3671	CLM_3671		CLM_3671	3704487	3704563	-	tRNA-Arg		tRNA	gene3566	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3671
CLM_3672	CLM_3672		CLM_3672	3704589	3704662	-	tRNA-Gly		tRNA	gene3567	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3672
CLM_3673	CLM_3673		CLM_3673	3704691	3704768	-	tRNA-Pro		tRNA	gene3568	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3673
CLM_3674	CLM_3674		CLM_3674	3704794	3704869	-	tRNA-Lys		tRNA	gene3569	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3674
CLM_3675	CLM_3675		CLM_3675	3704874	3704952	-	tRNA-Arg		tRNA	gene3570	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3675
CLM_3676	CLM_3676		CLM_3676	3704958	3705031	-	tRNA-Gly		tRNA	gene3571	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3676
CLM_3677	CLM_3677		CLM_3677	3705040	3705114	-	tRNA-Gly		tRNA	gene3572	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3677
CLM_3678	CLM_3678		CLM_3678	3705180	3705265	-	tRNA-Leu		tRNA	gene3573	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3678
CLM_3679	CLM_3679		CLM_3679	3705279	3705356	-	tRNA-Lys		tRNA	gene3574	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3679
CLM_3680	CLM_3680		CLM_3680	3705358	3705434	-	tRNA-Gln		tRNA	gene3575	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3680
CLM_3681	CLM_3681		CLM_3681	3705437	3705514	-	tRNA-His		tRNA	gene3576	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3681
CLM_3682	CLM_3682		CLM_3682	3705529	3705604	-	tRNA-Lys		tRNA	gene3577	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3682
CLM_3683	CLM_3683		CLM_3683	3705609	3705687	-	tRNA-Arg		tRNA	gene3578	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3683
CLM_3684	CLM_3684		CLM_3684	3705693	3705766	-	tRNA-Gly		tRNA	gene3579	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3684
CLM_3685	CLM_3685		CLM_3685	3705775	3705849	-	tRNA-Gly		tRNA	gene3580	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3685
CLM_3687	CLM_3687		CLM_3687	3705915	3706000	-	tRNA-Leu		tRNA	gene3581	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3687
CLM_3688	CLM_3688		CLM_3688	3706014	3706091	-	tRNA-Lys		tRNA	gene3582	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3688
CLM_3689	CLM_3689		CLM_3689	3706093	3706169	-	tRNA-Gln		tRNA	gene3583	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3689
CLM_3690	CLM_3690		CLM_3690	3706172	3706249	-	tRNA-His		tRNA	gene3584	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3690
CLM_3691	CLM_3691		CLM_3691	3706255	3706333	-	tRNA-Arg		tRNA	gene3585	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3691
CLM_3692	CLM_3692		CLM_3692	3706339	3706412	-	tRNA-Gly		tRNA	gene3586	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3692
CLM_3693	CLM_3693		CLM_3693	3706419	3706496	-	tRNA-Pro		tRNA	gene3587	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3693
CLM_3694	CLM_3694		CLM_3694	3706641	3707111	-	phosphodiesterase%2C MJ0936 family	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00040	gene	gene3588	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3694
CLM_3695	CLM_3695		CLM_3695	3707128	3707727	-	non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family	identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042	gene	gene3589	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3695
CLM_3696	CLM_3696		CLM_3696	3707831	3709204	+	conserved hypothetical protein		gene	gene3590	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3696
CLM_3697	CLM_3697		CLM_3697	3709317	3709472	+	conserved hypothetical protein		gene	gene3591	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3697
CLM_3698	CLM_3698		CLM_3698	3709475	3711037	-	bacterial extracellular solute-binding protein%2C family 5	identified by match to protein family HMM PF00496	gene	gene3592	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3698
CLM_3699	CLM_3699	gatB	gatB	3711191	3712621	-	glutamyl-tRNA(Gln) amidotransferase%2C B subunit	identified by match to protein family HMM PF01162%3B match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133	gene	gene3593	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3699
CLM_3700	CLM_3700	gatA	gatA	3712657	3714114	-	glutamyl-tRNA(Gln) amidotransferase%2C A subunit	identified by match to protein family HMM PF01425%3B match to protein family HMM TIGR00132	gene	gene3594	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3700
CLM_3701	CLM_3701	gatC	gatC	3714151	3714438	-	glutamyl-tRNA(Gln) amidotransferase%2C C subunit	identified by match to protein family HMM PF02686%3B match to protein family HMM TIGR00135	gene	gene3595	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3701
CLM_3702	CLM_3702		CLM_3702	3714573	3715784	-	sodium:dicarboxylate symporter family protein	identified by match to protein family HMM PF00375	gene	gene3596	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3702
CLM_3703	CLM_3703		CLM_3703	3716169	3716438	-	putative membrane protein		gene	gene3597	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3703
CLM_3704	CLM_3704	ligA	ligA	3716539	3718533	-	DNA ligase%2C NAD-dependent	identified by match to protein family HMM PF00533%3B match to protein family HMM PF00633%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575	gene	gene3598	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3704
CLM_3705	CLM_3705	pcrA	pcrA	3718545	3720761	-	ATP-dependent DNA helicase PcrA	identified by match to protein family HMM PF00580	gene	gene3599	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3705
CLM_3706	CLM_3706		CLM_3706	3720888	3721187	-	TrpR homolog%2C YerC/YecD family	identified by match to protein family HMM PF01371%3B match to protein family HMM TIGR02531	gene	gene3600	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3706
CLM_3707	CLM_3707		CLM_3707	3721485	3722201	-	RNA pseudouridine synthase family protein	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093	gene	gene3601	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3707
CLM_3708	CLM_3708		CLM_3708	3722285	3723001	-	transglycosylase%2C SLT family	identified by match to protein family HMM PF01464	gene	gene3602	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3708
CLM_3709	CLM_3709		CLM_3709	3723015	3725018	-	two component regulator three Y motif protein	identified by match to protein family HMM PF07495	gene	gene3603	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3709
CLM_3710	CLM_3710		CLM_3710	3725152	3725319	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3604	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3710
CLM_3711	CLM_3711		CLM_3711	3725483	3725917	-	YaiI/YqxD family protein	identified by match to protein family HMM PF02639	gene	gene3605	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3711
CLM_3712	CLM_3712	pgi	pgi	3725928	3727280	-	glucose-6-phosphate isomerase	identified by match to protein family HMM PF00342	gene	gene3606	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3712
CLM_3713	CLM_3713		CLM_3713	3727364	3727534	-	conserved hypothetical protein		gene	gene3607	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3713
CLM_3714	CLM_3714		CLM_3714	3727865	3728509	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene3608	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3714
CLM_3715	CLM_3715		CLM_3715	3728740	3729273	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene3609	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3715
CLM_3716	CLM_3716	ldhA	ldhA	3729817	3730821	+	D-lactate dehydrogenase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene3610	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3716
CLM_3717	CLM_3717	ldhA	ldhA	3730996	3731991	-	D-lactate dehydrogenase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift%3B identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene3611	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3717
CLM_3718	CLM_3718		CLM_3718	3732805	3733983	-	putative membrane protein		gene	gene3612	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3718
CLM_3719	CLM_3719		CLM_3719	3734199	3735395	-	electron transfer flavoprotein%2C alpha subunit/FixB family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene3613	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3719
CLM_3720	CLM_3720		CLM_3720	3735413	3736207	-	electron transfer flavoprotein%2C beta subunit/FixA family protein	identified by match to protein family HMM PF01012	gene	gene3614	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3720
CLM_3721	CLM_3721		CLM_3721	3736220	3737353	-	acyl-CoA dehydrogenase family protein	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene3615	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3721
CLM_3722	CLM_3722	fldC	fldC	3737520	3738644	-	R-phenyllactate dehydratase%2C C subunit	identified by match to protein family HMM PF06050	gene	gene3616	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3722
CLM_3723	CLM_3723	fldB	fldB	3738646	3739869	-	R-phenyllactate dehydratase%2C B subunit	identified by match to protein family HMM PF06050	gene	gene3617	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3723
CLM_3724	CLM_3724	fldI	fldI	3739874	3740668	-	R-phenyllactate dehydratase activator	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene3618	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3724
CLM_3725	CLM_3725	fldA	fldA	3740668	3741906	-	E-cinnamoyl-CoA:R-phenyllactate CoA transferase	identified by match to protein family HMM PF02515	gene	gene3619	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3725
CLM_3726	CLM_3726		CLM_3726	3741960	3743591	-	AMP-binding enzyme	identified by match to protein family HMM PF00501	gene	gene3620	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3726
CLM_3727	CLM_3727		CLM_3727	3744057	3745397	-	branched-chain amino acid transport system II carrier protein	identified by match to protein family HMM PF05525%3B match to protein family HMM TIGR00796	gene	gene3621	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3727
CLM_3728	CLM_3728	guaA	guaA	3745855	3747387	-	GMP synthase	identified by match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888	gene	gene3622	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3728
CLM_3729	CLM_3729	guaB	guaB	3747400	3748854	-	inosine-5'-monophosphate dehydrogenase	identified by match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302	gene	gene3623	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3729
CLM_3731	CLM_3731		CLM_3731	3749295	3750044	+	PP-loop family protein	identified by match to protein family HMM PF01171	gene	gene3624	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3731
CLM_3732	CLM_3732	groL	groL	3750123	3751748	-	chaperonin GroEL	identified by match to protein family HMM PF00118%3B match to protein family HMM TIGR02348	gene	gene3625	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3732
CLM_3733	CLM_3733	groES	groES	3751778	3752065	-	chaperonin%2C 10 kDa	identified by match to protein family HMM PF00166	gene	gene3626	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3733
CLM_3734	CLM_3734		CLM_3734	3753020	3753754	-	putative membrane protein	identified by match to protein family HMM PF09335	gene	gene3628	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3734
CLM_3735	CLM_3735		CLM_3735	3752381	3753025	+	integral membrane protein TIGR01906	identified by match to protein family HMM PF07314%3B match to protein family HMM TIGR01906	gene	gene3627	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3735
CLM_3736	CLM_3736		CLM_3736	3754207	3755700	-	[Fe] hydrogenase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02906	gene	gene3629	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3736
CLM_3737	CLM_3737		CLM_3737	3755873	3756790	-	putative 8-oxoguanine DNA glycosylase	identified by match to protein family HMM PF00730%3B match to protein family HMM PF07934	gene	gene3630	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3737
CLM_3738	CLM_3738	gltA	gltA	3756940	3758322	-	glutamate synthase (NADPH)%2C homotetrameric	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01316	gene	gene3631	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3738
CLM_3739	CLM_3739		CLM_3739	3758322	3759212	-	oxidoreductase%2C NAD-binding	identified by match to protein family HMM PF00175	gene	gene3632	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3739
CLM_3740	CLM_3740		CLM_3740	3759442	3760074	-	transcriptional regulator%2C Rex family	identified by match to protein family HMM PF02629%3B match to protein family HMM PF06971	gene	gene3633	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3740
CLM_3741	CLM_3741		CLM_3741	3760274	3762196	+	putative drug resistance ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3634	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3741
CLM_3742	CLM_3742		CLM_3742	3762537	3763301	-	DNA-binding response regulator%2C LytTr family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene3635	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3742
CLM_3743	CLM_3743		CLM_3743	3763302	3764936	-	sensor histidine kinase	identified by match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694	gene	gene3636	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3743
CLM_3744	CLM_3744	cstA	cstA	3765172	3766590	+	carbon starvation protein CstA	identified by match to protein family HMM PF02554	gene	gene3637	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3744
CLM_3745	CLM_3745		CLM_3745	3766641	3769568	-	peptidase family protein	identified by match to protein family HMM PF05193%3B match to protein family HMM PF08367	gene	gene3638	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3745
CLM_3746	CLM_3746	pyc	pyc	3770080	3773514	-	pyruvate carboxylase	identified by match to protein family HMM PF00289%3B match to protein family HMM PF00364%3B match to protein family HMM PF00682%3B match to protein family HMM PF02436%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR01235	gene	gene3639	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3746
CLM_3747	CLM_3747		CLM_3747	3773974	3774996	-	metalloendopeptidase%2C glycoprotease family protein	identified by match to protein family HMM PF00814%3B match to protein family HMM TIGR00329	gene	gene3640	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3747
CLM_3748	CLM_3748		CLM_3748	3775220	3775849	+	endodeoxyribonuclease RusA family protein	identified by match to protein family HMM PF05866	gene	gene3641	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3748
CLM_3749	CLM_3749		CLM_3749	3776085	3776216	+	conserved hypothetical protein		gene	gene3642	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3749
CLM_3750	CLM_3750		CLM_3750	3776226	3777482	-	pyridine nucleotide-disulfide oxidoreductase	identified by match to protein family HMM PF07992	gene	gene3643	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3750
CLM_3751	CLM_3751		CLM_3751	3777722	3777799	-	tRNA-Trp		tRNA	gene3644	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3751
CLM_3752	CLM_3752		CLM_3752	3777850	3778236	-	conserved hypothetical protein		gene	gene3645	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3752
CLM_3753	CLM_3753		CLM_3753	3778299	3779189	-	conserved hypothetical protein		gene	gene3646	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3753
CLM_3754	CLM_3754		CLM_3754	3779205	3780113	-	manganese/zinc/iron chelate uptake ABC transporter%2C Mzt family%2C substrate-binding protein	identified by match to protein family HMM PF01297	gene	gene3647	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3754
CLM_3755	CLM_3755		CLM_3755	3780311	3781552	+	HDIG domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene3648	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3755
CLM_3756	CLM_3756		CLM_3756	3781690	3782148	+	conserved hypothetical protein TIGR00150	identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150	gene	gene3649	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3756
CLM_3757	CLM_3757		CLM_3757	3782145	3782858	+	glycoprotease family protein	identified by match to protein family HMM PF00814	gene	gene3650	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3757
CLM_3758	CLM_3758	rimI	rimI	3782851	3783309	+	ribosomal-protein-alanine acetyltransferase	identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR01575	gene	gene3651	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3758
CLM_3759	CLM_3759	tyrS	tyrS	3783667	3784890	-	tyrosine--tRNA ligase	identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234	gene	gene3652	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3759
CLM_3760	CLM_3760		CLM_3760	3785123	3785530	-	conserved hypothetical protein		gene	gene3653	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3760
CLM_3761	CLM_3761		CLM_3761	3785666	3786823	-	putative ATP-binding protein	identified by match to protein family HMM PF04326	gene	gene3654	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3761
CLM_3762	CLM_3762		CLM_3762	3786971	3787534	-	conserved hypothetical protein		gene	gene3655	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3762
CLM_3763	CLM_3763		CLM_3763	3787615	3787776	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3656	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3763
CLM_3764	CLM_3764		CLM_3764	3788039	3789031	+	PAP2 family protein	identified by match to protein family HMM PF01569	gene	gene3657	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3764
CLM_3765	CLM_3765	prfC	prfC	3789120	3790709	-	peptide chain release factor 3	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00503	gene	gene3658	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3765
CLM_3766	CLM_3766		CLM_3766	3791214	3792020	+	HAD hydrolase%2C IIB family	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene3659	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3766
CLM_3767	CLM_3767	trpS	trpS	3792240	3793238	-	tryptophan--tRNA ligase	identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233	gene	gene3660	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3767
CLM_3768	CLM_3768		CLM_3768	3793416	3793553	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3661	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3768
CLM_3769	CLM_3769		CLM_3769	3793850	3794224	-	superoxide reductase	identified by match to protein family HMM PF01880%3B match to protein family HMM PF06397%3B match to protein family HMM TIGR00319%3B match to protein family HMM TIGR00320%3B match to protein family HMM TIGR00332	gene	gene3662	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3769
CLM_3770	CLM_3770		CLM_3770	3794407	3794601	+	conserved hypothetical protein		gene	gene3663	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3770
CLM_3771	CLM_3771		CLM_3771	3795028	3796470	-	nisin leader peptide-processing serine protease NisP	identified by match to protein family HMM PF00082	gene	gene3664	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3771
CLM_3772	CLM_3772		CLM_3772	3797196	3798332	-	putative membrane protein		gene	gene3665	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3772
CLM_3773	CLM_3773		CLM_3773	3798325	3799260	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3666	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3773
CLM_3774	CLM_3774		CLM_3774	3799434	3799709	-	conserved hypothetical protein		gene	gene3667	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3774
CLM_3775	CLM_3775		CLM_3775	3799799	3799963	-	keratin associated protein 5-5		gene	gene3668	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3775
CLM_3776	CLM_3776		CLM_3776	3800055	3800345	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3669	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3776
CLM_3777	CLM_3777		CLM_3777	3800376	3802523	-	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3670	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3777
CLM_3778	CLM_3778		CLM_3778	3802537	3804270	-	putative multidrug export ATP-binding/permease protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene3671	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3778
CLM_3779	CLM_3779	cgs	cgs	3805610	3814258	-	cyclic beta 1-2 glucan synthetase	identified by match to protein family HMM PF06165%3B match to protein family HMM PF06204%3B match to protein family HMM PF06205	gene	gene3672	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3779
CLM_3780	CLM_3780	lysA	lysA	3814523	3815791	-	diaminopimelate decarboxilase	identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048	gene	gene3673	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3780
CLM_3781	CLM_3781	lysC	lysC	3815825	3817027	-	aspartokinase II	identified by match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00657	gene	gene3674	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3781
CLM_3783	CLM_3783		CLM_3783	3817423	3818721	-	zinc metalloprotease%2C aminopeptidase I family	identified by match to protein family HMM PF02127	gene	gene3675	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3783
CLM_3784	CLM_3784		CLM_3784	3818870	3820048	+	cation efflux family protein	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene3676	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3784
CLM_3785	CLM_3785		CLM_3785	3820185	3821276	+	conserved hypothetical protein		gene	gene3677	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3785
CLM_3786	CLM_3786		CLM_3786	3821541	3823670	-	conserved hypothetical protein	identified by similarity to GB:ABK61386.1	gene	gene3678	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3786
CLM_3787	CLM_3787	ftsH	ftsH	3823691	3825667	-	ATP-dependent metalloprotease FtsH	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene3679	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3787
CLM_3788	CLM_3788		CLM_3788	3826084	3827475	-	putative dipeptidase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01887	gene	gene3680	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3788
CLM_3789	CLM_3789	proS	proS	3827676	3829112	-	proline--tRNA ligase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF09180%3B match to protein family HMM TIGR00408	gene	gene3681	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3789
CLM_3790	CLM_3790		CLM_3790	3829536	3829778	-	GIY-YIG domain protein	identified by match to protein family HMM PF01541	gene	gene3682	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3790
CLM_3791	CLM_3791		CLM_3791	3829899	3831122	-	putative membrane protein		gene	gene3683	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3791
CLM_3792	CLM_3792		CLM_3792	3831218	3832096	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3684	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3792
CLM_3793	CLM_3793		CLM_3793	3832254	3833060	-	putative membrane protein		gene	gene3685	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3793
CLM_3794	CLM_3794		CLM_3794	3833035	3833607	-	RNA polymerase sigma factor%2C sigma-70 family	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF04967%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937	gene	gene3686	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3794
CLM_3795	CLM_3795		CLM_3795	3833992	3835650	-	sulfate permease%2C SulP family	identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00815	gene	gene3687	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3795
CLM_3796	CLM_3796		CLM_3796	3835864	3837210	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene3688	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3796
CLM_3797	CLM_3797		CLM_3797	3837233	3837925	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene3689	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3797
CLM_3798	CLM_3798		CLM_3798	3838189	3839397	-	putative membrane protein		gene	gene3690	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3798
CLM_3799	CLM_3799		CLM_3799	3839402	3840307	-	bacitracin ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3691	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3799
CLM_3800	CLM_3800		CLM_3800	3840665	3840868	+	conserved hypothetical protein		gene	gene3692	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3800
CLM_3801	CLM_3801		CLM_3801	3840995	3841990	-	conserved hypothetical protein		gene	gene3693	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3801
CLM_3802	CLM_3802		CLM_3802	3842357	3843442	-	conserved hypothetical protein	identified by match to protein family HMM PF05913	gene	gene3694	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3802
CLM_3803	CLM_3803		CLM_3803	3843750	3844643	-	BadF/BadG/BcrA/BcrD ATPase family protein	identified by match to protein family HMM PF01869	gene	gene3695	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3803
CLM_3804	CLM_3804		CLM_3804	3844703	3844999	-	PTS system%2C lactose/cellobiose-specific family%2C IIA component	identified by match to protein family HMM PF02255	gene	gene3696	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3804
CLM_3805	CLM_3805		CLM_3805	3845238	3845549	-	PTS system%2C lactose/cellobiose-specific family%2C IIB component	identified by match to protein family HMM PF02302	gene	gene3697	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3805
CLM_3806	CLM_3806		CLM_3806	3845669	3848398	-	sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF00874%3B match to protein family HMM PF03610%3B match to protein family HMM PF07728	gene	gene3698	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3806
CLM_3807	CLM_3807		CLM_3807	3848524	3849816	-	PTS system%2C lactose/cellobiose family%2C IIC component	identified by match to protein family HMM PF02378%3B match to protein family HMM TIGR00410	gene	gene3699	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3807
CLM_3808	CLM_3808		CLM_3808	3849897	3851234	-	glycosyl hydrolase%2C family 4	identified by match to protein family HMM PF02056	gene	gene3700	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3808
CLM_3809	CLM_3809		CLM_3809	3851587	3852900	-	putative diguanylate cyclase	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene3701	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3809
CLM_3810	CLM_3810		CLM_3810	3853322	3853921	+	site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589	gene	gene3702	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3810
CLM_3811	CLM_3811	speD	speD	3854232	3854582	-	S-adenosylmethionine decarboxylase	identified by match to protein family HMM PF02675%3B match to protein family HMM TIGR03330	gene	gene3703	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3811
CLM_3812	CLM_3812		CLM_3812	3854642	3854758	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3704	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3812
CLM_3813	CLM_3813		CLM_3813	3854736	3855932	-	conserved hypothetical protein	identified by match to protein family HMM PF01861	gene	gene3705	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3813
CLM_3814	CLM_3814		CLM_3814	3856456	3856731	-	conserved hypothetical protein		gene	gene3706	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3814
CLM_3815	CLM_3815		CLM_3815	3858086	3858622	+	putative flavoredoxin		gene	gene3707	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3815
CLM_3816	CLM_3816		CLM_3816	3859204	3860058	-	conserved hypothetical protein	identified by match to protein family HMM PF05368	gene	gene3708	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3816
CLM_3817	CLM_3817		CLM_3817	3860530	3861375	-	oxidoreductase%2C aldo/keto reductase family	identified by match to protein family HMM PF00248	gene	gene3709	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3817
CLM_3818	CLM_3818		CLM_3818	3861399	3862025	-	multimeric flavodoxin WrbA family protein	identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358	gene	gene3710	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3818
CLM_3819	CLM_3819		CLM_3819	3862237	3862659	+	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene3711	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3819
CLM_3820	CLM_3820		CLM_3820	3862932	3863336	-	cytidine/deoxycytidylate deaminase family protein	identified by match to protein family HMM PF00383	gene	gene3712	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3820
CLM_3821	CLM_3821		CLM_3821	3863487	3864425	-	NAD-dependent epimerase/dehydratase	identified by match to protein family HMM PF01370	gene	gene3713	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3821
CLM_3822	CLM_3822		CLM_3822	3864479	3864886	-	AraC-family transcriptional regulator	identified by match to protein family HMM PF00165	gene	gene3714	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3822
CLM_3823	CLM_3823		CLM_3823	3864962	3865483	-	riboflavin biosynthesis protein RibD C- domain protein	identified by match to protein family HMM PF01872	gene	gene3715	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3823
CLM_3824	CLM_3824	uvrA	uvrA	3865564	3865773	-		excinuclease ABC%2C A subunit%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene3716	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3824
CLM_3825	CLM_3825		CLM_3825	3865896	3866102	-	transcriptional regulator%2C MarR family		gene	gene3717	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3825
CLM_3826	CLM_3826		CLM_3826	3866240	3867184	-	putative membrane protein	identified by match to protein family HMM PF04657	gene	gene3718	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3826
CLM_3827	CLM_3827		CLM_3827	3867429	3867830	-	RRF2 family protein	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene3719	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3827
CLM_3828	CLM_3828		CLM_3828	3868062	3868469	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene3720	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3828
CLM_3829	CLM_3829	rumA	rumA	3868896	3870281	-	23S rRNA (uracil-5-)-methyltransferase RumA	identified by match to protein family HMM PF01938%3B match to protein family HMM PF02475%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479	gene	gene3721	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3829
CLM_3830	CLM_3830		CLM_3830	3870514	3870867	-	conserved hypothetical protein		gene	gene3722	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3830
CLM_3831	CLM_3831		CLM_3831	3870869	3870982	-	conserved hypothetical protein		gene	gene3723	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3831
CLM_3832	CLM_3832		CLM_3832	3870960	3871124	+	hypothetical protein	identified by glimmer%3B putative	gene	gene3724	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3832
CLM_3833	CLM_3833		CLM_3833	3871194	3872204	-	oxidoreductase%2C aldo/keto reductase family	identified by match to protein family HMM PF00037%3B match to protein family HMM PF00248	gene	gene3725	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3833
CLM_3834	CLM_3834	pykA	pykA	3872348	3874105	-	pyruvate kinase	identified by match to protein family HMM PF00224%3B match to protein family HMM PF00391%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064	gene	gene3726	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3834
CLM_3835	CLM_3835	pfkA	pfkA	3874139	3875098	-	6-phosphofructokinase	identified by match to protein family HMM PF00365%3B match to protein family HMM TIGR02482	gene	gene3727	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3835
CLM_3836	CLM_3836	dnaE	dnaE	3875340	3878897	-	DNA polymerase III%2C alpha subunit	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594	gene	gene3728	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3836
CLM_3837	CLM_3837		CLM_3837	3879060	3880007	-	conserved hypothetical protein	identified by match to protein family HMM PF02650%3B match to protein family HMM TIGR00647	gene	gene3729	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3837
CLM_3838	CLM_3838		CLM_3838	3880014	3881351	-	conserved hypothetical protein	identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01826	gene	gene3730	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3838
CLM_3839	CLM_3839		CLM_3839	3881348	3882232	-	conserved hypothetical protein	identified by match to protein family HMM PF03668	gene	gene3731	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3839
CLM_3840	CLM_3840	murB	murB	3882352	3883272	-	UDP-N-acetylmuramate dehydrogenase	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179	gene	gene3732	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3840
CLM_3841	CLM_3841		CLM_3841	3883341	3884072	-	PHP domain protein	identified by match to protein family HMM PF02811	gene	gene3733	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3841
CLM_3842	CLM_3842	uvrC	uvrC	3884121	3885977	-	excinuclease ABC%2C C subunit	identified by match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM PF08459%3B match to protein family HMM TIGR00194	gene	gene3734	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3842
CLM_3843	CLM_3843		CLM_3843	3885991	3886599	-	putative metal-dependent hydrolase%2C membrane-bound	identified by match to protein family HMM PF04307	gene	gene3735	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3843
CLM_3844	CLM_3844		CLM_3844	3886786	3887682	-	HD domain protein	identified by match to protein family HMM PF01336%3B match to protein family HMM PF01966	gene	gene3736	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3844
CLM_3845	CLM_3845		CLM_3845	3887710	3889140	-	penicillin-binding protein	identified by match to protein family HMM PF00905	gene	gene3737	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3845
CLM_3846	CLM_3846		CLM_3846	3889145	3890374	-	cell cycle protein%2C FtsW/RodA/SpoVE family	identified by match to protein family HMM PF01098	gene	gene3738	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3846
CLM_3847	CLM_3847		CLM_3847	3890385	3890822	-	FHA domain protein	identified by match to protein family HMM PF00498	gene	gene3739	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3847
CLM_3848	CLM_3848	uvrA	uvrA	3890921	3893743	-	excinuclease ABC%2C A subunit	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630	gene	gene3740	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3848
CLM_3849	CLM_3849	uvrB	uvrB	3893762	3895750	-	excinuclease ABC%2C B subunit	identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00631	gene	gene3741	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3849
CLM_3850	CLM_3850		CLM_3850	3895752	3897047	-	putative membrane protein		gene	gene3742	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3850
CLM_3851	CLM_3851		CLM_3851	3897136	3898341	-	carboxyl-terminal protease	identified by match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225	gene	gene3743	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3851
CLM_3852	CLM_3852		CLM_3852	3898551	3899441	-	putative cell division protein FtsX	identified by match to protein family HMM PF02687	gene	gene3744	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3852
CLM_3853	CLM_3853		CLM_3853	3899431	3900117	-	putative cell division ATP-binding protein FtsE	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02673	gene	gene3745	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3853
CLM_3854	CLM_3854		CLM_3854	3900273	3901175	-	putative membrane protein	identified by match to protein family HMM PF02588	gene	gene3746	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3854
CLM_3855	CLM_3855		CLM_3855	3901268	3901477	-	hypothetical protein	identified by glimmer%3B putative	gene	gene3747	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3855
CLM_3856	CLM_3856		CLM_3856	3901691	3902632	-	transketolase%2C pyridine binding subunit	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene3748	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3856
CLM_3857	CLM_3857		CLM_3857	3902632	3903456	-	transketolase%2C thiamine diphosphate binding subunit	identified by match to protein family HMM PF00456	gene	gene3749	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3857
CLM_3858	CLM_3858		CLM_3858	3903719	3904072	-	PemK family protein	identified by match to protein family HMM PF02452	gene	gene3750	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3858
CLM_3859	CLM_3859		CLM_3859	3904029	3904352	-	conserved hypothetical protein		gene	gene3751	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3859
CLM_3860	CLM_3860	alr	alr	3904491	3905651	-	alanine racemase	identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492	gene	gene3752	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3860
CLM_3861	CLM_3861		CLM_3861	3905679	3906293	-	conserved hypothetical protein		gene	gene3753	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3861
CLM_3862	CLM_3862		CLM_3862	3906493	3907995	-	carbohydrate kinase family protein	identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197	gene	gene3754	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3862
CLM_3863	CLM_3863	acpS	acpS	3907992	3908372	-	holo-(acyl-carrier-protein) synthase	identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00516%3B match to protein family HMM TIGR00556	gene	gene3755	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3863
CLM_3864	CLM_3864		CLM_3864	3908487	3908849	-	conserved hypothetical protein		gene	gene3756	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3864
CLM_3865	CLM_3865		CLM_3865	3909243	3910568	-	Na+/H+ antiporter family protein	identified by match to protein family HMM PF03553%3B match to protein family HMM PF06808	gene	gene3757	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3865
CLM_3867	CLM_3867		CLM_3867	3910873	3911730	-	YihY family protein	identified by match to protein family HMM PF03631%3B match to protein family HMM TIGR00765	gene	gene3758	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3867
CLM_3868	CLM_3868		CLM_3868	3911890	3912549	-	conserved hypothetical protein		gene	gene3759	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3868
CLM_3869	CLM_3869	rpsD	rpsD	3912765	3913358	-	ribosomal protein S4	identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017	gene	gene3760	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3869
CLM_3870	CLM_3870		CLM_3870	3913804	3914976	+	sodium:dicarboxylate symporter family protein	identified by match to protein family HMM PF00375	gene	gene3761	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3870
CLM_3871	CLM_3871		CLM_3871	3915304	3915786	+	conserved hypothetical protein		gene	gene3762	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3871
CLM_3872	CLM_3872		CLM_3872	3916117	3916911	-	transcriptional regulator	identified by match to protein family HMM PF00376%3B match to protein family HMM PF06445	gene	gene3763	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3872
CLM_3873	CLM_3873		CLM_3873	3916920	3917759	-	creatininase family protein	identified by match to protein family HMM PF02633	gene	gene3764	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3873
CLM_3874	CLM_3874	sodC	sodC	3917961	3918464	-	copper/zinc superoxide dismutase	identified by match to protein family HMM PF00080	gene	gene3765	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3874
CLM_3875	CLM_3875	glmS	glmS	3918734	3920560	-	glutamine-fructose-6-phosphate transaminase (isomerizing)	identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135	gene	gene3766	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3875
CLM_3877	CLM_3877		CLM_3877	3921163	3921840	-	putative transaldolase	identified by match to protein family HMM PF00923	gene	gene3767	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3877
CLM_3878	CLM_3878		CLM_3878	3921859	3922506	-	haloacid dehalogenase%2C IA family protein	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene3768	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3878
CLM_3879	CLM_3879	srlD	srlD	3922530	3923315	-	sorbitol-6-phosphate 2-dehydrogenase	identified by match to protein family HMM PF00106	gene	gene3769	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3879
CLM_3880	CLM_3880		CLM_3880	3923336	3923701	-	PTS system%2C glucitol/sorbitol-specific%2C IIA component	identified by match to protein family HMM PF03829	gene	gene3770	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3880
CLM_3881	CLM_3881		CLM_3881	3923917	3924921	-	PTS system%2C glucitol/sorbitol-specific%2C IIBC component	identified by match to protein family HMM PF03612%3B match to protein family HMM PF07663%3B match to protein family HMM TIGR00825	gene	gene3771	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3881
CLM_3882	CLM_3882		CLM_3882	3924934	3925479	-	PTS system%2C glucitol/sorbitol-specific%2C IIC component	identified by match to protein family HMM PF03608%3B match to protein family HMM TIGR00821	gene	gene3772	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3882
CLM_3883	CLM_3883	gutM	gutM	3925522	3925917	-	glucitol operon activator protein	identified by match to protein family HMM PF06923	gene	gene3773	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3883
CLM_3884	CLM_3884		CLM_3884	3925931	3926980	-	putative L-iditol 2-dehydrogenase	identified by match to protein family HMM PF00107%3B match to protein family HMM PF08240	gene	gene3774	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3884
CLM_3885	CLM_3885		CLM_3885	3927015	3927986	-	putative glucitol operon regulator	identified by match to protein family HMM PF04198	gene	gene3775	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3885
CLM_3886	CLM_3886	glmM	glmM	3928342	3929691	-	phosphoglucosamine mutase	identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880%3B match to protein family HMM TIGR01455	gene	gene3776	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3886
CLM_3887	CLM_3887		CLM_3887	3929826	3930356	-	2-oxoacid:acceptor oxidoreductase%2C gamma subunit%2C pyruvate/2-ketoisovalerate family	identified by match to protein family HMM PF01558	gene	gene3777	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3887
CLM_3888	CLM_3888		CLM_3888	3930358	3931107	-	putative 2-oxoacid:acceptor oxidoreductase%2C beta subunit	identified by match to protein family HMM PF02775	gene	gene3778	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3888
CLM_3889	CLM_3889		CLM_3889	3931107	3932177	-	putative 2-oxoacid:acceptor oxidoreductase%2C alpha subunit	identified by match to protein family HMM PF01855%3B match to protein family HMM PF02780	gene	gene3779	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3889
CLM_3890	CLM_3890		CLM_3890	3932193	3932402	-	putative 2-oxoacid:acceptor oxidoreductase%2C delta subunit	identified by match to protein family HMM PF00037	gene	gene3780	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3890
CLM_3891	CLM_3891		CLM_3891	3932504	3933166	-	conserved hypothetical protein		gene	gene3781	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3891
CLM_3892	CLM_3892	buk	buk	3933429	3934499	-	butyrate kinase	identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR02707	gene	gene3782	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3892
CLM_3893	CLM_3893	ptb	ptb	3934528	3935439	-	phosphate butyryltransferase	identified by match to protein family HMM PF01515%3B match to protein family HMM TIGR02706	gene	gene3783	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3893
CLM_3894	CLM_3894	buk	buk	3935432	3936526	-	butyrate kinase	identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR02707	gene	gene3784	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3894
CLM_3895	CLM_3895		CLM_3895	3936627	3938225	-	oxidoreductase%2C FAD-binding		gene	gene3785	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3895
CLM_3896	CLM_3896		CLM_3896	3938227	3939507	-	conserved hypothetical protein	identified by match to protein family HMM PF07949	gene	gene3786	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3896
CLM_3897	CLM_3897		CLM_3897	3939477	3940325	-	conserved hypothetical protein TIGR00159	identified by match to protein family HMM PF02457%3B match to protein family HMM TIGR00159	gene	gene3787	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3897
CLM_3899	CLM_3899		CLM_3899	3940580	3941113	+	cell wall hydrolase family protein	identified by match to protein family HMM PF07486	gene	gene3788	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3899
CLM_3900	CLM_3900		CLM_3900	3941506	3942369	-	oxidoreductase%2C pyridine nucleotide-disulphide family	identified by match to protein family HMM PF01134%3B match to protein family HMM PF07992	gene	gene3789	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3900
CLM_3901	CLM_3901	trx	trx	3942435	3942752	-	thioredoxin	identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068	gene	gene3790	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3901
CLM_3902	CLM_3902	iadA	iadA	3942861	3944036	-	isoaspartyl dipeptidase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR01975	gene	gene3791	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3902
CLM_3903	CLM_3903		CLM_3903	3944111	3945364	-	tetratricopeptide repeat protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene3792	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3903
CLM_3904	CLM_3904		CLM_3904	3945392	3946132	-	putative lipoprotein		gene	gene3793	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3904
CLM_3905	CLM_3905	ptsI	ptsI	3946238	3947857	-	phosphoenolpyruvate-protein phosphotransferase	identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417	gene	gene3794	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3905
CLM_3906	CLM_3906		CLM_3906	3948175	3950184	+	putative sensory box sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF00989%3B match to protein family HMM PF02954%3B match to protein family HMM TIGR00229	gene	gene3795	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3906
CLM_3907	CLM_3907		CLM_3907	3950322	3951029	-	tetratricopeptide repeat protein	identified by match to protein family HMM PF00515	gene	gene3796	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3907
CLM_3908	CLM_3908		CLM_3908	3951099	3951662	-	hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta region	identified by match to protein family HMM PF05683%3B match to protein family HMM TIGR00723	gene	gene3797	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3908
CLM_3909	CLM_3909		CLM_3909	3951754	3952596	-	hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha region	identified by match to protein family HMM PF05681%3B match to protein family HMM TIGR00722	gene	gene3798	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3909
CLM_3910	CLM_3910	cwlD	cwlD	3952737	3953441	-	N-acetylmuramoyl-L-alanine amidase CwlD	identified by similarity to SP:P50864%3B match to protein family HMM PF01520%3B match to protein family HMM TIGR02883	gene	gene3799	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3910
CLM_3911	CLM_3911		CLM_3911	3953707	3955323	-	Na/Pi-cotransporter family protein/PhoU family protein	identified by match to protein family HMM PF01895%3B match to protein family HMM PF02690%3B match to protein family HMM TIGR00704	gene	gene3800	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3911
CLM_3912	CLM_3912	rpsI	rpsI	3955629	3956021	-	ribosomal protein S9	identified by match to protein family HMM PF00380	gene	gene3801	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3912
CLM_3913	CLM_3913	rplM	rplM	3956047	3956484	-	ribosomal protein L13	identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066	gene	gene3802	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3913
CLM_3914	CLM_3914	truA	truA	3956605	3957345	-	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071	gene	gene3803	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3914
CLM_3915	CLM_3915		CLM_3915	3957345	3958148	-	cobalt transport permease%2C CbiQ family	identified by match to protein family HMM PF02361	gene	gene3804	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3915
CLM_3916	CLM_3916		CLM_3916	3958145	3959011	-	putative cobalt ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3805	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3916
CLM_3917	CLM_3917		CLM_3917	3958996	3959844	-	putative cobalt ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3806	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3917
CLM_3918	CLM_3918	rplQ	rplQ	3959935	3960276	-	ribosomal protein L17	identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059	gene	gene3807	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3918
CLM_3919	CLM_3919	rpoA	rpoA	3960320	3961267	-	DNA-directed RNA polymerase%2C alpha subunit	identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027	gene	gene3808	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3919
CLM_3920	CLM_3920	rpsD	rpsD	3961335	3961955	-	ribosomal protein S4	identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017	gene	gene3809	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3920
CLM_3921	CLM_3921	rpsK	rpsK	3961990	3962388	-	ribosomal protein S11	identified by match to protein family HMM PF00411	gene	gene3810	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3921
CLM_3922	CLM_3922	rpsM	rpsM	3962406	3962777	-	ribosomal protein S13	identified by match to protein family HMM PF00416	gene	gene3811	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3922
CLM_3923	CLM_3923	rpmJ	rpmJ	3962890	3963003	-	ribosomal protein L36	identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022	gene	gene3812	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3923
CLM_3924	CLM_3924	infA	infA	3963020	3963238	-	translation initiation factor IF-1	identified by match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008	gene	gene3813	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3924
CLM_3925	CLM_3925		CLM_3925	3963246	3963527	-	conserved hypothetical protein		gene	gene3814	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3925
CLM_3926	CLM_3926	map	map	3963542	3964291	-	methionine aminopeptidase%2C type I	identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500	gene	gene3815	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3926
CLM_3927	CLM_3927	adk	adk	3964291	3964941	-	adenylate kinase	identified by match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351	gene	gene3816	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3927
CLM_3928	CLM_3928	secY	secY	3964965	3966242	-	preprotein translocase%2C SecY subunit	identified by match to protein family HMM PF00344%3B match to protein family HMM TIGR00967	gene	gene3817	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3928
CLM_3929	CLM_3929	rplO	rplO	3966243	3966683	-	ribosomal protein L15	identified by match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071	gene	gene3818	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3929
CLM_3930	CLM_3930	rpmD	rpmD	3966703	3966882	-	ribosomal protein L30	identified by match to protein family HMM PF00327%3B match to protein family HMM TIGR01308	gene	gene3819	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3930
CLM_3931	CLM_3931	rpsE	rpsE	3966896	3967393	-	ribosomal protein S5	identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021	gene	gene3820	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3931
CLM_3932	CLM_3932	rplR	rplR	3967411	3967770	-	ribosomal protein L18	identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060	gene	gene3821	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3932
CLM_3933	CLM_3933	rplF	rplF	3967789	3968331	-	ribosomal protein L6	identified by match to protein family HMM PF00347	gene	gene3822	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3933
CLM_3934	CLM_3934	rpsH	rpsH	3968355	3968753	-	ribosomal protein S8	identified by match to protein family HMM PF00410	gene	gene3823	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3934
CLM_3935	CLM_3935	rpsN	rpsN	3968783	3968968	-	ribosomal protein S14	identified by match to protein family HMM PF00253	gene	gene3824	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3935
CLM_3936	CLM_3936	rplE	rplE	3968985	3969527	-	ribosomal protein L5	identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673	gene	gene3825	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3936
CLM_3937	CLM_3937	rplX	rplX	3969550	3969867	-	ribosomal protein L24	identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079	gene	gene3826	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3937
CLM_3938	CLM_3938	rplN	rplN	3969891	3970259	-	ribosomal protein L14	identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067	gene	gene3827	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3938
CLM_3939	CLM_3939	rpsQ	rpsQ	3970294	3970548	-	ribosomal protein S17	identified by match to protein family HMM PF00366	gene	gene3828	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3939
CLM_3940	CLM_3940	rpmC	rpmC	3970570	3970782	-	ribosomal protein L29	identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012	gene	gene3829	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3940
CLM_3941	CLM_3941	rplP	rplP	3970772	3971215	-	ribosomal protein L16	identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164	gene	gene3830	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3941
CLM_3942	CLM_3942	rpsC	rpsC	3971233	3971904	-	ribosomal protein S3	identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009	gene	gene3831	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3942
CLM_3943	CLM_3943	rplV	rplV	3971922	3972257	-	ribosomal protein L22	identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044	gene	gene3832	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3943
CLM_3944	CLM_3944	rpsS	rpsS	3972279	3972563	-	ribosomal protein S19	identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050	gene	gene3833	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3944
CLM_3945	CLM_3945	rplB	rplB	3972633	3973466	-	ribosomal protein L2	identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171	gene	gene3834	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3945
CLM_3946	CLM_3946	rplW	rplW	3973521	3973814	-	ribosomal protein L23	identified by match to protein family HMM PF00276	gene	gene3835	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3946
CLM_3947	CLM_3947	rplD	rplD	3973814	3974434	-	ribosomal protein L4	identified by match to protein family HMM PF00573	gene	gene3836	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3947
CLM_3948	CLM_3948	rplC	rplC	3974459	3975088	-	ribosomal protein L3	identified by match to protein family HMM PF00297	gene	gene3837	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3948
CLM_3949	CLM_3949	rpsJ	rpsJ	3975178	3975486	-	ribosomal protein S10	identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049	gene	gene3838	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3949
CLM_3950	CLM_3950	tuf	tuf	3975883	3977076	-	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene3839	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3950
CLM_3951	CLM_3951	fusA	fusA	3977116	3979185	-	translation elongation factor G	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484	gene	gene3840	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3951
CLM_3952	CLM_3952	rpsG	rpsG	3979257	3979727	-	ribosomal protein S7	identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029	gene	gene3841	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3952
CLM_3953	CLM_3953	rpsL	rpsL	3979888	3980265	-	ribosomal protein S12	identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981	gene	gene3842	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3953
CLM_3954	CLM_3954		CLM_3954	3980341	3980583	-	ribosomal protein L7Ae family protein	identified by match to protein family HMM PF01248	gene	gene3843	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3954
CLM_3955	CLM_3955	rpoC	rpoC	3980705	3984241	-	DNA-directed RNA polymerase%2C beta' subunit	identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386	gene	gene3844	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3955
CLM_3956	CLM_3956	rpoB	rpoB	3984262	3987960	-	DNA-directed RNA polymerase%2C beta subunit	identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013	gene	gene3845	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3956
CLM_3957	CLM_3957	rplL	rplL	3988235	3988606	-	ribosomal protein L7/L12	identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855	gene	gene3846	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3957
CLM_3958	CLM_3958	rplJ	rplJ	3988654	3989154	-	ribosomal protein L10	identified by match to protein family HMM PF00466	gene	gene3847	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3958
CLM_3959	CLM_3959	rplA	rplA	3989356	3990045	-	ribosomal protein L1	identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169	gene	gene3848	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3959
CLM_3960	CLM_3960	rplK	rplK	3990102	3990527	-	ribosomal protein L11	identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632	gene	gene3849	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3960
CLM_3961	CLM_3961	nusG	nusG	3990598	3991122	-	transcription termination/antitermination factor NusG	identified by match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922	gene	gene3850	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3961
CLM_3962	CLM_3962	secE	secE	3991169	3991396	-	preprotein translocase%2C SecE subunit	identified by match to protein family HMM PF00584%3B match to protein family HMM TIGR00964	gene	gene3851	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3962
CLM_3963	CLM_3963	rpmG	rpmG	3991446	3991595	-	ribosomal protein L33	identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023	gene	gene3852	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3963
CLM_3964	CLM_3964	tuf	tuf	3991797	3992990	-	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene3853	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3964
CLM_3965	CLM_3965		CLM_3965	3993073	3993148	-	tRNA-Thr		tRNA	gene3854	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3965
CLM_3966	CLM_3966		CLM_3966	3993166	3993242	-	tRNA-Gly		tRNA	gene3855	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3966
CLM_3967	CLM_3967	sigH	sigH	3993306	3993947	-	RNA polymerase sigma-H factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02859%3B match to protein family HMM TIGR02937	gene	gene3856	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3967
CLM_3968	CLM_3968		CLM_3968	3994021	3994530	-	conserved hypothetical protein	identified by match to protein family HMM PF05991	gene	gene3857	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3968
CLM_3969	CLM_3969		CLM_3969	3994533	3995306	-	RNA methyltransferase%2C TrmH family%2C group 3	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186	gene	gene3858	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3969
CLM_3970	CLM_3970	thyX	thyX	3995309	3996061	-	thymidylate synthase%2C flavin-dependent	identified by match to protein family HMM PF02511%3B match to protein family HMM TIGR02170	gene	gene3859	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3970
CLM_3971	CLM_3971		CLM_3971	3996051	3996491	-	RNase3 domain protein	identified by match to protein family HMM PF00636	gene	gene3860	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3971
CLM_3972	CLM_3972	cysS	cysS	3996540	3997937	-	cysteine--tRNA ligase	identified by match to protein family HMM PF01406%3B match to protein family HMM PF09190%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00435	gene	gene3861	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3972
CLM_3973	CLM_3973	ilvA	ilvA	3997966	3999183	-	threonine ammonia-lyase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01127	gene	gene3862	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3973
CLM_3974	CLM_3974		CLM_3974	3999255	4000892	-	putative prolyl-tRNA synthetase	identified by match to protein family HMM PF03129%3B match to protein family HMM PF04073	gene	gene3863	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3974
CLM_3975	CLM_3975	ispD	ispD	4001003	4001692	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	identified by match to protein family HMM PF01128%3B match to protein family HMM TIGR00453	gene	gene3864	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3975
CLM_3976	CLM_3976		CLM_3976	4001694	4002794	-	PIN/TRAM domain protein	identified by match to protein family HMM PF01850%3B match to protein family HMM PF01938	gene	gene3865	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3976
CLM_3977	CLM_3977		CLM_3977	4003199	4003597	+	conserved hypothetical protein		gene	gene3866	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3977
CLM_3978	CLM_3978		CLM_3978	4003629	4004690	-	putative DNA-binding protein	identified by match to protein family HMM PF02457	gene	gene3867	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3978
CLM_3979	CLM_3979	radA	radA	4004709	4006067	-	DNA repair protein RadA	identified by match to protein family HMM TIGR00416	gene	gene3868	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3979
CLM_3980	CLM_3980	clpC	clpC	4006187	4008622	-	negative regulator of genetic competence MecB/ClpC	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02151%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728	gene	gene3869	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3980
CLM_3981	CLM_3981		CLM_3981	4008624	4009667	-	ATP:guanido phosphotransferase domain protein	identified by match to protein family HMM PF00217	gene	gene3870	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3981
CLM_3982	CLM_3982		CLM_3982	4009672	4010199	-	UVR domain protein	identified by match to protein family HMM PF02151	gene	gene3871	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3982
CLM_3983	CLM_3983	ctsR	ctsR	4010222	4010686	-	transciptional repressor CtsR	identified by match to protein family HMM PF05848	gene	gene3872	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3983
CLM_3984	CLM_3984		CLM_3984	4011082	4011312	-	conserved hypothetical protein		gene	gene3873	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3984
CLM_3985	CLM_3985	fusA	fusA	4011659	4013731	-	translation elongation factor G	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484	gene	gene3874	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3985
CLM_3986	CLM_3986		CLM_3986	4013917	4013993	-	tRNA-Asn		tRNA	gene3875	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3986
CLM_3987	CLM_3987		CLM_3987	4014019	4014095	-	tRNA-Asn		tRNA	gene3876	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3987
CLM_3988	CLM_3988	rrf	rrf	4014103	4014219	-	5S ribosomal RNA		rRNA	gene3877	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3988
CLM_3990	CLM_3990		CLM_3990	4014690	4015346	+	conserved hypothetical protein		gene	gene3878	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3990
CLM_3991	CLM_3991		CLM_3991	4015420	4015875	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene3879	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3991
CLM_3992	CLM_3992		CLM_3992	4017285	4017361	-	tRNA-Ile		tRNA	gene3880	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3992
CLM_3993	CLM_3993	rrs	rrs	4017448	4018949	-	16S ribosomal RNA		rRNA	gene3881	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3993
CLM_3994	CLM_3994		CLM_3994	4019175	4019252	-	tRNA-Ala		tRNA	gene3882	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3994
CLM_3995	CLM_3995		CLM_3995	4019254	4019332	-	tRNA-Met		tRNA	gene3883	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3995
CLM_3997	CLM_3997	rrf	rrf	4019339	4019455	-	5S ribosomal RNA		rRNA	gene3884	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3997
CLM_3999	CLM_3999		CLM_3999	4019929	4020585	+	conserved hypothetical protein		gene	gene3885	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_3999
CLM_4000	CLM_4000		CLM_4000	4020659	4021114	+	conserved hypothetical protein	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a frame shift	gene	gene3886	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4000
CLM_4001	CLM_4001	rrs	rrs	4022672	4024173	-	16S ribosomal RNA		rRNA	gene3887	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4001
CLM_4002	CLM_4002	murD	murD	4024744	4026120	-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	identified by match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01087	gene	gene3888	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4002
CLM_4003	CLM_4003	glyS	glyS	4026946	4028337	-	glycine--tRNA ligase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00389	gene	gene3889	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4003
CLM_4004	CLM_4004	lysS	lysS	4028657	4030171	-	lysine--tRNA ligase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499	gene	gene3890	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4004
CLM_4005	CLM_4005	greA	greA	4030190	4030672	-	transcription elongation factor GreA	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462	gene	gene3891	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4005
CLM_4006	CLM_4006		CLM_4006	4030803	4031630	-	conserved hypothetical protein		gene	gene3892	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4006
CLM_4007	CLM_4007		CLM_4007	4031680	4032651	-	dihydrouridine synthase	identified by match to protein family HMM PF01180%3B match to protein family HMM PF01207%3B match to protein family HMM TIGR00737	gene	gene3893	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4007
CLM_4008	CLM_4008	coaX	coaX	4032661	4033437	-	pantothenate kinase%2C type III	identified by match to protein family HMM PF03309%3B match to protein family HMM TIGR00671	gene	gene3894	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4008
CLM_4009	CLM_4009	fhs	fhs	4033592	4035265	-	formate--tetrahydrofolate ligase	identified by match to protein family HMM PF01268	gene	gene3895	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4009
CLM_4010	CLM_4010	ftsH	ftsH	4035468	4037273	-	ATP-dependent metalloprotease FtsH	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene3896	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4010
CLM_4011	CLM_4011	hpt	hpt	4037355	4037900	-	hypoxanthine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203	gene	gene3897	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4011
CLM_4012	CLM_4012	tilS	tilS	4037884	4039290	-	tRNA(Ile)-lysidine synthetase	identified by match to protein family HMM PF01171%3B match to protein family HMM TIGR02432%3B match to protein family HMM TIGR02433	gene	gene3898	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4012
CLM_4013	CLM_4013	spoIIE	spoIIE	4039439	4041826	-	stage II sporulation protein E	identified by match to protein family HMM PF07228%3B match to protein family HMM TIGR02865	gene	gene3899	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4013
CLM_4014	CLM_4014		CLM_4014	4042155	4042233	-	tRNA-Met		tRNA	gene3900	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4014
CLM_4015	CLM_4015		CLM_4015	4042242	4042319	-	tRNA-Met		tRNA	gene3901	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4015
CLM_4016	CLM_4016		CLM_4016	4042371	4042448	-	tRNA-Met		tRNA	gene3902	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4016
CLM_4017	CLM_4017		CLM_4017	4042451	4042541	-	tRNA-Leu		tRNA	gene3903	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4017
CLM_4018	CLM_4018		CLM_4018	4042571	4042649	-	tRNA-Met		tRNA	gene3904	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4018
CLM_4019	CLM_4019		CLM_4019	4042652	4042729	-	tRNA-Met		tRNA	gene3905	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4019
CLM_4020	CLM_4020		CLM_4020	4042732	4042822	-	tRNA-Leu		tRNA	gene3906	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4020
CLM_4021	CLM_4021		CLM_4021	4042963	4043367	-	putative general stress protein	identified by match to protein family HMM PF00575	gene	gene3907	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4021
CLM_4022	CLM_4022		CLM_4022	4043429	4043698	-	putative cell division protein FtsL	identified by match to protein family HMM PF04977	gene	gene3908	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4022
CLM_4023	CLM_4023		CLM_4023	4043793	4044191	-	spore cortex biosynthesis protein YabQ	identified by match to protein family HMM PF09578%3B match to protein family HMM TIGR02893	gene	gene3909	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4023
CLM_4024	CLM_4024	yabP	yabP	4044206	4044496	-	sporulation protein YabP	identified by match to protein family HMM PF07873%3B match to protein family HMM TIGR02892	gene	gene3910	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4024
CLM_4025	CLM_4025		CLM_4025	4044615	4044854	-	S4 domain protein	identified by match to protein family HMM PF01479	gene	gene3911	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4025
CLM_4026	CLM_4026	hup	hup	4044928	4045206	-	DNA-binding protein HU	identified by match to protein family HMM PF00216	gene	gene3912	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4026
CLM_4027	CLM_4027		CLM_4027	4045334	4046779	-	MazG family protein	identified by match to protein family HMM PF00590%3B match to protein family HMM PF03819%3B match to protein family HMM TIGR00444	gene	gene3913	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4027
CLM_4028	CLM_4028	spoVB	spoVB	4046794	4048329	-	stage V sporulation protein B	identified by match to protein family HMM PF01554%3B match to protein family HMM PF01943%3B match to protein family HMM PF03023	gene	gene3914	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4028
CLM_4029	CLM_4029		CLM_4029	4048462	4049013	-	stage V sporulation protein T	identified by match to protein family HMM PF04014%3B match to protein family HMM TIGR01439%3B match to protein family HMM TIGR02851	gene	gene3915	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4029
CLM_4030	CLM_4030		CLM_4030	4049212	4050222	-	prsA family protein	identified by similarity to SP:Q81U45%3B match to protein family HMM PF00639	gene	gene3916	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4030
CLM_4031	CLM_4031	mfd	mfd	4050306	4053812	-	transcription-repair coupling factor	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580	gene	gene3917	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4031
CLM_4032	CLM_4032	pth	pth	4053840	4054409	-	aminoacyl-tRNA hydrolase	identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447	gene	gene3918	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4032
CLM_4033	CLM_4033		CLM_4033	4054519	4055691	-	putative protease	identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595	gene	gene3919	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4033
CLM_4034	CLM_4034		CLM_4034	4055726	4057135	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene3920	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4034
CLM_4035	CLM_4035		CLM_4035	4057136	4057822	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene3921	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4035
CLM_4036	CLM_4036	prsA	prsA	4058002	4058961	-	ribose-phosphate pyrophosphokinase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251	gene	gene3922	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4036
CLM_4037	CLM_4037	glmU	glmU	4058982	4060355	-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01173	gene	gene3923	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4037
CLM_4038	CLM_4038	spoVG	spoVG	4060517	4060804	-	stage V sporulation protein G	identified by match to protein family HMM PF04026	gene	gene3924	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4038
CLM_4039	CLM_4039	purR	purR	4060907	4061722	-	pur operon repressor	identified by match to protein family HMM PF00156%3B match to protein family HMM PF09182%3B match to protein family HMM TIGR01743	gene	gene3925	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4039
CLM_4040	CLM_4040	murC	murC	4061922	4063298	+	UDP-N-acetylmuramate--alanine ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01082	gene	gene3926	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4040
CLM_4041	CLM_4041		CLM_4041	4063363	4063671	+	putative membrane protein		gene	gene3927	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4041
CLM_4042	CLM_4042		CLM_4042	4063748	4063825	+	tRNA-Pro		tRNA	gene3928	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4042
CLM_4043	CLM_4043		CLM_4043	4063916	4065265	+	[Fe] hydrogenase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02906	gene	gene3929	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4043
CLM_4044	CLM_4044		CLM_4044	4065351	4065995	+	haloacid dehalogenase%2C IA family protein	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509	gene	gene3930	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4044
CLM_4045	CLM_4045		CLM_4045	4066321	4066719	+	conserved hypothetical protein		gene	gene3931	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4045
CLM_4046	CLM_4046		CLM_4046	4066786	4067505	-	putative 2-phosphosulfolactate phosphatase	identified by match to protein family HMM PF04029	gene	gene3932	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4046
CLM_4047	CLM_4047		CLM_4047	4067550	4068482	-	radical SAM protein	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR01212	gene	gene3933	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4047
CLM_4048	CLM_4048		CLM_4048	4068550	4069686	-	putative phage head-tail adaptor		gene	gene3934	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4048
CLM_4049	CLM_4049		CLM_4049	4069825	4070871	+	putative membrane protein		gene	gene3935	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4049
CLM_4050	CLM_4050		CLM_4050	4070904	4071800	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3936	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4050
CLM_4051	CLM_4051		CLM_4051	4071943	4073739	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF07700	gene	gene3937	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4051
CLM_4052	CLM_4052		CLM_4052	4074041	4074703	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene3938	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4052
CLM_4053	CLM_4053		CLM_4053	4074718	4075092	-	conserved hypothetical protein		gene	gene3939	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4053
CLM_4054	CLM_4054		CLM_4054	4075110	4075628	-	putative peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type	identified by match to protein family HMM PF00160	gene	gene3940	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4054
CLM_4055	CLM_4055	murI	murI	4075775	4076548	-	glutamate racemase	identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00067	gene	gene3941	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4055
CLM_4056	CLM_4056		CLM_4056	4076741	4078639	+	putative glutamine synthetase	identified by match to protein family HMM PF00120	gene	gene3942	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4056
CLM_4057	CLM_4057		CLM_4057	4078684	4079232	-	conserved hypothetical protein		gene	gene3943	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4057
CLM_4058	CLM_4058	murA	murA	4079627	4080880	+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072	gene	gene3944	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4058
CLM_4059	CLM_4059		CLM_4059	4080906	4081691	+	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene3945	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4059
CLM_4060	CLM_4060		CLM_4060	4081708	4082277	+	putative lipoprotein		gene	gene3946	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4060
CLM_4061	CLM_4061		CLM_4061	4082292	4082795	+	SEC-C domain protein	identified by match to protein family HMM PF02810	gene	gene3947	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4061
CLM_4062	CLM_4062		CLM_4062	4082974	4083453	+	conserved hypothetical protein TIGR00246	identified by match to protein family HMM PF02590%3B match to protein family HMM TIGR00246	gene	gene3948	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4062
CLM_4064	CLM_4064		CLM_4064	4083678	4084111	-		nitroreductase family protein%3B this region contains one or more premature stops and/or frameshifts	pseudogene	gene3949	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4064
CLM_4065	CLM_4065		CLM_4065	4084410	4085636	-	major facilitator family protein	identified by match to protein family HMM PF07690	gene	gene3950	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4065
CLM_4066	CLM_4066		CLM_4066	4085732	4086307	-	putative NADPH-dependent FMN reductase	an automated process has identified a potential problem with this gene model%3B the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model%3B the current gene model (or a revised gene model) may contain a premature stop%3B identified by match to protein family HMM PF03358	gene	gene3951	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4066
CLM_4067	CLM_4067		CLM_4067	4086600	4087172	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene3952	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4067
CLM_4068	CLM_4068		CLM_4068	4087419	4087808	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene3953	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4068
CLM_4069	CLM_4069	map	map	4087829	4088704	+	methionine aminopeptidase%2C type I	identified by match to protein family HMM PF00557%3B match to protein family HMM PF02810%3B match to protein family HMM TIGR00500	gene	gene3954	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4069
CLM_4070	CLM_4070		CLM_4070	4088794	4089333	-	nitroreductase family protein	identified by match to protein family HMM PF00881	gene	gene3955	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4070
CLM_4071	CLM_4071		CLM_4071	4090034	4091530	+	conserved hypothetical protein		gene	gene3956	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4071
CLM_4072	CLM_4072		CLM_4072	4091523	4092359	+	radical SAM domain protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055	gene	gene3957	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4072
CLM_4073	CLM_4073		CLM_4073	4092775	4093026	+	conserved hypothetical protein		gene	gene3958	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4073
CLM_4074	CLM_4074		CLM_4074	4093029	4094075	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene3959	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4074
CLM_4075	CLM_4075		CLM_4075	4094076	4095452	+	ThiH/BioB family protein	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968	gene	gene3960	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4075
CLM_4076	CLM_4076		CLM_4076	4095461	4096660	+	GTP-binding protein	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231	gene	gene3961	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4076
CLM_4077	CLM_4077		CLM_4077	4096975	4098348	+	sodium:solute symporter family protein	identified by match to protein family HMM PF00474	gene	gene3962	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4077
CLM_4078	CLM_4078		CLM_4078	4098648	4099892	+	glycosyl transferase%2C group 1 family	identified by match to protein family HMM PF00534	gene	gene3963	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4078
CLM_4079	CLM_4079		CLM_4079	4100054	4100731	-	PHP domain protein	identified by match to protein family HMM PF02811	gene	gene3964	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4079
CLM_4080	CLM_4080		CLM_4080	4101027	4101512	+	conserved hypothetical protein	identified by match to protein family HMM PF08761	gene	gene3965	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4080
CLM_4081	CLM_4081		CLM_4081	4101619	4102050	+	putative membrane protein	identified by match to protein family HMM PF04657	gene	gene3966	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4081
CLM_4082	CLM_4082		CLM_4082	4102231	4103136	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3967	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4082
CLM_4083	CLM_4083		CLM_4083	4103224	4104420	+	subtilase family protein	identified by match to protein family HMM PF00082	gene	gene3968	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4083
CLM_4084	CLM_4084		CLM_4084	4104456	4105337	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3969	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4084
CLM_4085	CLM_4085		CLM_4085	4105366	4106313	-	D-isomer specific 2-hydroxyacid dehydrogenase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene3970	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4085
CLM_4086	CLM_4086	accA	accA	4106513	4107352	-	acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit	identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513	gene	gene3971	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4086
CLM_4087	CLM_4087	accD	accD	4107399	4108268	-	acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit	identified by match to protein family HMM TIGR00515	gene	gene3972	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4087
CLM_4088	CLM_4088	accC	accC	4108288	4109634	-	acetyl-CoA carboxylase%2C biotin carboxylase subunit	identified by similarity to SP:P49787%3B match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR00514	gene	gene3973	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4088
CLM_4089	CLM_4089	fabZ	fabZ	4109666	4110100	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01750	gene	gene3974	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4089
CLM_4090	CLM_4090	accB	accB	4110120	4110596	-	acetyl-CoA carboxylase%2C biotin carboxyl carrier protein	identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531	gene	gene3975	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4090
CLM_4091	CLM_4091	fabF	fabF	4110600	4111838	-	3-oxoacyl-(acyl-carrier-protein) synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150	gene	gene3976	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4091
CLM_4092	CLM_4092	fabG	fabG	4111858	4112604	-	3-oxoacyl-[acyl-carrier-protein] reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF08659%3B match to protein family HMM TIGR01830	gene	gene3977	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4092
CLM_4093	CLM_4093	fabD	fabD	4112622	4113566	-	malonyl CoA-acyl carrier protein transacylase	identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128	gene	gene3978	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4093
CLM_4094	CLM_4094		CLM_4094	4113587	4114513	-	oxidoreductase%2C 2-nitropropane dioxygenase family	identified by match to protein family HMM PF03060%3B match to protein family HMM TIGR03151	gene	gene3979	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4094
CLM_4095	CLM_4095	acpP	acpP	4114639	4114863	-	acyl carrier protein	identified by match to protein family HMM PF00550	gene	gene3980	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4095
CLM_4096	CLM_4096	fabH	fabH	4114904	4115884	-	3-oxoacyl-(acyl-carrier-protein) synthase III	identified by match to protein family HMM PF08541%3B match to protein family HMM PF08545%3B match to protein family HMM TIGR00747	gene	gene3981	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4096
CLM_4097	CLM_4097		CLM_4097	4115877	4116353	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047%3B match to protein family HMM PF03965	gene	gene3982	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4097
CLM_4098	CLM_4098		CLM_4098	4116369	4117427	-	oxidoreductase%2C 2-nitropropane dioxygenase family	identified by match to protein family HMM PF03060	gene	gene3983	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4098
CLM_4099	CLM_4099		CLM_4099	4117525	4118460	-	putative peptidase	identified by match to protein family HMM PF01551	gene	gene3984	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4099
CLM_4100	CLM_4100		CLM_4100	4118641	4119627	+	putative DNA replication protein DnaD	identified by match to protein family HMM PF04271%3B match to protein family HMM TIGR01446	gene	gene3985	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4100
CLM_4101	CLM_4101		CLM_4101	4119620	4120597	+	putative DNA replication protein DnaC		gene	gene3986	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4101
CLM_4103	CLM_4103		CLM_4103	4120689	4120764	-	tRNA-Thr		tRNA	gene3987	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4103
CLM_4104	CLM_4104		CLM_4104	4120768	4120846	-	tRNA-Asp		tRNA	gene3988	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4104
CLM_4106	CLM_4106		CLM_4106	4120854	4120931	-	tRNA-Val		tRNA	gene3989	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4106
CLM_4107	CLM_4107		CLM_4107	4120947	4121023	-	tRNA-Glu		tRNA	gene3990	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4107
CLM_4108	CLM_4108		CLM_4108	4121079	4121157	-	tRNA-Asp		tRNA	gene3991	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4108
CLM_4109	CLM_4109		CLM_4109	4121163	4121240	-	tRNA-Val		tRNA	gene3992	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4109
CLM_4110	CLM_4110		CLM_4110	4121257	4121333	-	tRNA-Glu		tRNA	gene3993	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4110
CLM_4113	CLM_4113		CLM_4113	4121417	4121495	-	tRNA-Asp		tRNA	gene3994	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4113
CLM_4114	CLM_4114		CLM_4114	4121503	4121580	-	tRNA-Val		tRNA	gene3995	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4114
CLM_4115	CLM_4115		CLM_4115	4121597	4121671	-	tRNA-Glu		tRNA	gene3996	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4115
CLM_4116	CLM_4116		CLM_4116	4121844	4122653	-	conserved hypothetical protein	identified by match to protein family HMM PF03618	gene	gene3997	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4116
CLM_4117	CLM_4117		CLM_4117	4122666	4123040	-	CoA-binding protein		gene	gene3998	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4117
CLM_4118	CLM_4118		CLM_4118	4123221	4124450	+	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF03486%3B match to protein family HMM TIGR00275	gene	gene3999	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4118
CLM_4119	CLM_4119		CLM_4119	4124552	4125301	-	acyl-ACP thioesterase family protein	identified by match to protein family HMM PF01643	gene	gene4000	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4119
CLM_4120	CLM_4120		CLM_4120	4125404	4125589	-	conserved hypothetical protein		gene	gene4001	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4120
CLM_4121	CLM_4121	purA	purA	4125715	4127001	-	adenylosuccinate synthase	identified by match to protein family HMM PF00709%3B match to protein family HMM TIGR00184	gene	gene4002	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4121
CLM_4122	CLM_4122		CLM_4122	4127233	4128618	-	pyridine nucleotide-disulphide oxidoreductase family protein		gene	gene4003	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4122
CLM_4123	CLM_4123		CLM_4123	4128786	4129001	-	hypothetical protein	identified by glimmer%3B putative	gene	gene4004	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4123
CLM_4124	CLM_4124		CLM_4124	4129194	4130915	-	phosphoglucomutase/phosphomannomutase family protein	identified by match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880	gene	gene4005	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4124
CLM_4125	CLM_4125	dnaB	dnaB	4131157	4132494	-	replicative DNA helicase	identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665	gene	gene4006	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4125
CLM_4126	CLM_4126		CLM_4126	4132525	4134444	-	ATP-dependent protease	identified by match to protein family HMM PF00004%3B match to protein family HMM PF01078%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02903	gene	gene4007	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4126
CLM_4127	CLM_4127	rplI	rplI	4134455	4134898	-	ribosomal protein L9	identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158	gene	gene4008	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4127
CLM_4128	CLM_4128		CLM_4128	4134898	4136883	-	DHH family protein	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272	gene	gene4009	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4128
CLM_4129	CLM_4129		CLM_4129	4136884	4137888	-	putative membrane protein		gene	gene4010	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4129
CLM_4130	CLM_4130		CLM_4130	4137900	4138217	-	conserved hypothetical protein		gene	gene4011	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4130
CLM_4131	CLM_4131	rpsR	rpsR	4138365	4138607	-	ribosomal protein S18	identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165	gene	gene4012	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4131
CLM_4132	CLM_4132	ssb	ssb	4138626	4139072	-	single-strand binding protein	identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621	gene	gene4013	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4132
CLM_4133	CLM_4133	rpsF	rpsF	4139088	4139372	-	ribosomal protein S6	identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166	gene	gene4014	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4133
CLM_4134	CLM_4134		CLM_4134	4139478	4140626	-	2-hydroxyglutaryl-CoA dehydratase%2C D-component	identified by match to protein family HMM PF06050	gene	gene4015	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4134
CLM_4135	CLM_4135		CLM_4135	4140900	4141097	-	conserved hypothetical protein	identified by match to protein family HMM PF06107	gene	gene4016	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4135
CLM_4136	CLM_4136		CLM_4136	4141113	4141982	-	mechanosensitive ion channel family protein	identified by match to protein family HMM PF00924	gene	gene4017	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4136
CLM_4137	CLM_4137		CLM_4137	4141989	4142234	-	conserved hypothetical protein		gene	gene4018	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4137
CLM_4138	CLM_4138		CLM_4138	4142425	4143579	+	cysteine desulfurase family protein	identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01977	gene	gene4019	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4138
CLM_4139	CLM_4139	ytvI	ytvI	4143593	4144648	+	sporulation integral membrane protein YtvI	identified by match to protein family HMM PF01594%3B match to protein family HMM TIGR02872	gene	gene4020	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4139
CLM_4140	CLM_4140		CLM_4140	4144706	4145287	+	putative sporulation protein YyaC	identified by match to protein family HMM PF06866%3B match to protein family HMM TIGR02841	gene	gene4021	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4140
CLM_4141	CLM_4141		CLM_4141	4145289	4145534	-	hypothetical protein	identified by glimmer%3B putative	gene	gene4022	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4141
CLM_4142	CLM_4142		CLM_4142	4145587	4146096	-	conserved hypothetical protein		gene	gene4023	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4142
CLM_4143	CLM_4143		CLM_4143	4146134	4146982	-	stage 0 sporulation protein J	identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180	gene	gene4024	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4143
CLM_4144	CLM_4144	soj	soj	4146998	4147762	-	sporulation initiation inhibitor protein soj	identified by match to protein family HMM PF01656	gene	gene4025	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4144
CLM_4145	CLM_4145		CLM_4145	4147886	4148665	-	parB family protein	identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180	gene	gene4026	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4145
CLM_4146	CLM_4146	gidB	gidB	4148765	4149484	-	methyltransferase GidB	identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138	gene	gene4027	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4146
CLM_4147	CLM_4147	gidA	gidA	4149508	4151385	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00136	gene	gene4028	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4147
CLM_4148	CLM_4148	trmE	trmE	4151394	4152779	-	tRNA modification GTPase TrmE	identified by match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450	gene	gene4029	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4148
CLM_4149	CLM_4149	jag	jag	4152827	4153453	-	jag protein	identified by match to protein family HMM PF01424	gene	gene4030	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4149
CLM_4150	CLM_4150	oxaA	oxaA	4153471	4154124	-	membrane protein OxaA	identified by match to protein family HMM PF02096%3B match to protein family HMM TIGR03592	gene	gene4031	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4150
CLM_4151	CLM_4151		CLM_4151	4154150	4154359	-	conserved hypothetical protein TIGR00278	identified by match to protein family HMM PF01809%3B match to protein family HMM TIGR00278	gene	gene4032	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4151
CLM_4152	CLM_4152	rnpA	rnpA	4154356	4154691	-	ribonuclease P protein component	identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188	gene	gene4033	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4152
CLM_4153	CLM_4153	rpmH	rpmH	4154746	4154880	-	ribosomal protein L34	identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030	gene	gene4034	http://www.ncbi.nlm.nih.gov/gene/?term=CLM_4153