CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 SUPERFAMILY SSF52540 173 436 4.51E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 Gene3D G3DSA:3.40.50.300 239 439 1.5E-84 T 13-10-2018 CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 Pfam PF17191 RecG wedge domain 7 169 1.5E-20 T 13-10-2018 IPR033454 RecG, wedge domain CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 Gene3D G3DSA:3.40.50.300 440 612 2.8E-58 T 13-10-2018 CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 SMART SM00490 487 572 8.6E-24 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 644 1.4E-215 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 Pfam PF00271 Helicase conserved C-terminal domain 454 571 1.1E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 SUPERFAMILY SSF52540 369 629 8.91E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 SUPERFAMILY SSF50249 2 169 4.71E-31 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 Pfam PF00270 DEAD/DEAH box helicase 258 414 6.2E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 SMART SM00487 252 442 2.5E-36 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2795 6e3a1086f0e3691c68a30c3105b3fe0c 679 Gene3D G3DSA:2.40.50.140 49 137 1.2E-15 T 13-10-2018 CLM_1711 281afa31e596f4da42ebaf553360de65 207 Gene3D G3DSA:1.20.120.910 1 127 7.5E-33 T 13-10-2018 CLM_1711 281afa31e596f4da42ebaf553360de65 207 SUPERFAMILY SSF109635 1 88 5.89E-15 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily CLM_1711 281afa31e596f4da42ebaf553360de65 207 SUPERFAMILY SSF57716 89 121 1.11E-9 T 13-10-2018 CLM_1711 281afa31e596f4da42ebaf553360de65 207 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 87 119 9.0E-12 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CLM_1711 281afa31e596f4da42ebaf553360de65 207 TIGRFAM TIGR02890 bacill_yteA: regulatory protein, yteA family 6 165 1.5E-58 T 13-10-2018 IPR014240 Regulatory protein, YteA family CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 6.5E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 SUPERFAMILY SSF52172 4 188 8.75E-41 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 Gene3D G3DSA:1.10.10.10 133 230 1.6E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 Gene3D G3DSA:3.40.50.2300 1 132 4.0E-36 T 13-10-2018 CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 SMART SM00862 152 228 1.2E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 Pfam PF00072 Response regulator receiver domain 5 113 5.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0718 1bf4506ef14c52ca2a191d9fa3a96984 230 SMART SM00448 3 113 2.7E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1128 43f5ab913166059873d0afb41a4492eb 154 SUPERFAMILY SSF50475 1 153 2.29E-50 T 13-10-2018 CLM_1128 43f5ab913166059873d0afb41a4492eb 154 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 14 152 1.5E-19 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related CLM_1128 43f5ab913166059873d0afb41a4492eb 154 Gene3D G3DSA:2.30.110.10 2 153 1.4E-42 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Gene3D G3DSA:3.40.50.300 1 236 3.1E-80 T 13-10-2018 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Pfam PF00271 Helicase conserved C-terminal domain 433 543 3.8E-18 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Pfam PF02151 UvrB/uvrC motif 622 656 2.2E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 SUPERFAMILY SSF46600 610 656 1.19E-11 T 13-10-2018 IPR036876 UVR domain superfamily CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Pfam PF04851 Type III restriction enzyme, res subunit 10 138 3.8E-13 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Gene3D G3DSA:3.40.50.300 270 412 1.9E-52 T 13-10-2018 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Gene3D G3DSA:3.40.50.300 413 594 1.6E-51 T 13-10-2018 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 SMART SM00487 8 424 1.8E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 657 43.243 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Gene3D G3DSA:4.10.860.10 602 658 1.1E-7 T 13-10-2018 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 SUPERFAMILY SSF52540 36 579 1.43E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 SMART SM00490 458 544 1.2E-20 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 SUPERFAMILY SSF52540 1 413 3.83E-141 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 655 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 CLM_3849 eef77ce1796d022e98fd4db9300f15c0 662 Pfam PF12344 Ultra-violet resistance protein B 550 592 2.6E-21 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain CLM_0343 fa6cb33e98b29c7d43cf854ddf3c3110 201 Pfam PF01323 DSBA-like thioredoxin domain 5 193 9.5E-34 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CLM_0343 fa6cb33e98b29c7d43cf854ddf3c3110 201 Gene3D G3DSA:3.40.30.10 1 196 1.6E-38 T 13-10-2018 CLM_0343 fa6cb33e98b29c7d43cf854ddf3c3110 201 SUPERFAMILY SSF52833 1 196 3.95E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Gene3D G3DSA:3.90.190.20 319 459 2.0E-42 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 SUPERFAMILY SSF53623 107 317 2.75E-50 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 457 33.898 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Gene3D G3DSA:3.40.1390.10 1 78 5.9E-22 T 13-10-2018 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Pfam PF01225 Mur ligase family, catalytic domain 26 103 1.7E-8 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 31 456 1.3E-126 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Pfam PF08245 Mur ligase middle domain 113 299 2.1E-48 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 SUPERFAMILY SSF63418 2 105 7.98E-22 T 13-10-2018 IPR035911 MurE/MurF, N-terminal CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Gene3D G3DSA:3.40.1190.10 89 317 4.6E-64 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 397 1.5E-15 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CLM_1695 84e07b95e53eedd9138ea51001af28cd 462 SUPERFAMILY SSF53244 321 456 2.01E-34 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 SMART SM00091 411 477 0.0037 T 13-10-2018 IPR000014 PAS domain CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 SUPERFAMILY SSF55785 409 490 4.57E-7 T 13-10-2018 IPR035965 PAS domain superfamily CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Gene3D G3DSA:3.30.450.20 415 518 2.4E-8 T 13-10-2018 CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Gene3D G3DSA:1.10.15.40 357 414 3.0E-5 T 13-10-2018 CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Pfam PF12838 4Fe-4S dicluster domain 11 54 7.1E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 SUPERFAMILY SSF54862 10 73 5.23E-17 T 13-10-2018 CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Gene3D G3DSA:3.30.70.20 5 62 1.2E-12 T 13-10-2018 CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Gene3D G3DSA:3.40.950.20 102 332 6.3E-24 T 13-10-2018 CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 84 299 1.4E-50 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 SUPERFAMILY SSF53920 39 322 7.72E-55 T 13-10-2018 IPR009016 Iron hydrogenase CLM_1987 83fb58f72db54368ac46c54c34a0cd81 574 Pfam PF04060 Putative Fe-S cluster 374 402 6.5E-7 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 CLM_0481 6a8c54439885647cc8d07093bdc58546 242 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 4 198 6.2E-45 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CLM_0481 6a8c54439885647cc8d07093bdc58546 242 Gene3D G3DSA:3.40.50.880 15 211 2.7E-10 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0481 6a8c54439885647cc8d07093bdc58546 242 SUPERFAMILY SSF52317 14 192 1.72E-27 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.326 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 Gene3D G3DSA:1.10.455.10 2 156 9.8E-62 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 PIRSF PIRSF002122 4 156 2.8E-58 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 SUPERFAMILY SSF47973 7 149 2.22E-60 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 Pfam PF00177 Ribosomal protein S7p/S5e 2 149 7.7E-66 T 13-10-2018 IPR023798 Ribosomal protein S7 domain CLM_3952 cae8d40f84910e96f578ef896f5430fe 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.9E-68 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Gene3D G3DSA:4.10.780.10 628 668 3.7E-10 T 13-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 SUPERFAMILY SSF52518 784 1191 1.23E-129 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Gene3D G3DSA:3.40.920.10 414 624 5.0E-91 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 978 1089 2.7E-8 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 SMART SM00890 620 679 1.6E-35 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Gene3D G3DSA:3.40.50.970 784 1192 1.4E-172 T 13-10-2018 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Gene3D G3DSA:3.40.50.920 258 413 3.9E-59 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Gene3D G3DSA:3.40.50.970 1 257 1.1E-110 T 13-10-2018 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 19 246 2.0E-80 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 SUPERFAMILY SSF53323 415 668 5.1E-88 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Gene3D G3DSA:3.30.70.20 669 782 1.2E-42 T 13-10-2018 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Pfam PF12838 4Fe-4S dicluster domain 688 755 2.1E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 SUPERFAMILY SSF52922 258 412 1.26E-48 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Pfam PF10371 Domain of unknown function 630 678 3.2E-26 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 743 754 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 268 373 1.1E-16 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 PIRSF PIRSF000159 1 1192 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 SUPERFAMILY SSF54862 665 829 1.88E-22 T 13-10-2018 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 SUPERFAMILY SSF52518 3 257 3.24E-78 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 4 1191 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 CLM_3126 63371ec9ca1e71631c3baa7056921a49 1192 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 424 607 1.1E-31 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 SMART SM00418 262 340 2.1E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 Pfam PF01022 Bacterial regulatory protein, arsR family 269 310 3.6E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 SUPERFAMILY SSF46785 263 337 5.01E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 Gene3D G3DSA:1.10.10.10 257 342 1.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 296 311 1.6E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 264 279 1.6E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0725 a96c33a2fee24bbc1088d1d32450bd81 343 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 311 326 1.6E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_1889 0e64dc47efd069c31f69e987957348e9 359 SMART SM00635 194 271 5.4E-18 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 CLM_1889 0e64dc47efd069c31f69e987957348e9 359 Pfam PF02368 Bacterial Ig-like domain (group 2) 197 272 1.5E-17 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 CLM_1889 0e64dc47efd069c31f69e987957348e9 359 SUPERFAMILY SSF49373 196 274 5.1E-21 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments CLM_1889 0e64dc47efd069c31f69e987957348e9 359 Gene3D G3DSA:2.60.40.1080 194 276 6.2E-27 T 13-10-2018 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 495 504 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 SUPERFAMILY SSF46689 495 589 6.27E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 368 383 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 SUPERFAMILY SSF52540 280 525 4.37E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 Gene3D G3DSA:1.10.8.60 454 535 2.5E-23 T 13-10-2018 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 Gene3D G3DSA:3.30.450.20 164 260 2.2E-9 T 13-10-2018 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 305 318 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 Gene3D G3DSA:1.10.10.60 543 589 1.2E-9 T 13-10-2018 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 SMART SM00382 301 445 7.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 7 115 1.5E-6 T 13-10-2018 IPR039472 Sporulation stage V protein T, GAF domain CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 Gene3D G3DSA:3.40.50.300 267 453 2.3E-65 T 13-10-2018 CLM_2227 98b4458f606b87d22019203fa6df6f7c 591 Pfam PF00158 Sigma-54 interaction domain 281 448 1.8E-68 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 SUPERFAMILY SSF51905 35 391 4.27E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 SUPERFAMILY SSF50022 423 509 1.83E-23 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 Gene3D G3DSA:3.30.9.10 131 342 3.1E-41 T 13-10-2018 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 Gene3D G3DSA:3.50.50.60 38 384 3.1E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 PRINTS PR00162 Rieske 2Fe-2S subunit signature 494 506 4.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 PRINTS PR00162 Rieske 2Fe-2S subunit signature 482 494 4.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 PRINTS PR00162 Rieske 2Fe-2S subunit signature 461 472 4.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 Gene3D G3DSA:2.102.10.10 415 517 3.5E-23 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 Pfam PF00355 Rieske [2Fe-2S] domain 432 509 1.2E-13 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CLM_1741 3ea6aa2a8782fd0d4589fedd2b72d92d 521 Pfam PF01266 FAD dependent oxidoreductase 38 382 7.9E-42 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 SUPERFAMILY SSF52540 151 394 1.6E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 366 375 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 239 254 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 SMART SM00382 172 324 8.6E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 Gene3D G3DSA:3.30.450.20 37 141 2.4E-10 T 13-10-2018 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 SUPERFAMILY SSF46689 366 460 7.62E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 Pfam PF02954 Bacterial regulatory protein, Fis family 417 457 1.4E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 Pfam PF00158 Sigma-54 interaction domain 152 319 8.1E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 Gene3D G3DSA:1.10.8.60 325 403 1.3E-20 T 13-10-2018 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 SUPERFAMILY SSF55785 28 129 2.09E-5 T 13-10-2018 IPR035965 PAS domain superfamily CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 Gene3D G3DSA:1.10.10.60 416 462 2.0E-14 T 13-10-2018 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 Gene3D G3DSA:3.40.50.300 142 324 9.7E-63 T 13-10-2018 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 423 440 7.9E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_0704 a13a28f0bbb604a697fab48fa315e8e2 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 440 460 7.9E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 89 442 5.7E-74 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 PIRSF PIRSF002741 3 525 1.8E-87 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 94 116 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 Gene3D G3DSA:3.40.190.10 68 501 5.3E-105 T 13-10-2018 CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 SUPERFAMILY SSF53850 54 519 9.12E-106 T 13-10-2018 CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 Gene3D G3DSA:3.10.105.10 286 496 5.3E-105 T 13-10-2018 CLM_1912 8d60579b3f6c4fbb1866bda32c922fd5 531 Gene3D G3DSA:3.90.76.10 78 195 5.3E-105 T 13-10-2018 CLM_2052 08c13f05ddb36bb4485dd42c78c97bf4 122 Pfam PF05521 Phage head-tail joining protein 9 118 2.4E-23 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CLM_2052 08c13f05ddb36bb4485dd42c78c97bf4 122 Gene3D G3DSA:2.40.10.270 3 116 9.5E-23 T 13-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily CLM_2052 08c13f05ddb36bb4485dd42c78c97bf4 122 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 8 94 3.1E-14 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CLM_2269 4b23c4dc731b2b35654e377306101325 379 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 22 371 2.9E-95 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_2269 4b23c4dc731b2b35654e377306101325 379 SUPERFAMILY SSF53383 10 375 5.36E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2269 4b23c4dc731b2b35654e377306101325 379 PIRSF PIRSF000390 6 377 4.1E-100 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_2269 4b23c4dc731b2b35654e377306101325 379 Gene3D G3DSA:3.40.640.10 9 377 1.4E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0108 fd4a443b1ce84befb1f34f755846ac9a 203 Pfam PF08876 Domain of unknown function (DUF1836) 26 129 5.4E-25 T 13-10-2018 IPR014975 Protein of unknown function DUF1836 CLM_1247 33a61e3760647f0b86d40294f5900e28 388 Gene3D G3DSA:3.30.70.360 180 294 3.2E-134 T 13-10-2018 CLM_1247 33a61e3760647f0b86d40294f5900e28 388 Pfam PF01546 Peptidase family M20/M25/M40 72 382 2.3E-29 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_1247 33a61e3760647f0b86d40294f5900e28 388 SUPERFAMILY SSF55031 183 289 1.03E-26 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_1247 33a61e3760647f0b86d40294f5900e28 388 SUPERFAMILY SSF53187 2 387 1.47E-80 T 13-10-2018 CLM_1247 33a61e3760647f0b86d40294f5900e28 388 Gene3D G3DSA:3.40.630.10 15 371 3.2E-134 T 13-10-2018 CLM_1247 33a61e3760647f0b86d40294f5900e28 388 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 374 8.6E-109 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 CLM_1247 33a61e3760647f0b86d40294f5900e28 388 Pfam PF07687 Peptidase dimerisation domain 185 277 1.6E-7 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_1247 33a61e3760647f0b86d40294f5900e28 388 PIRSF PIRSF005962 1 388 1.1E-128 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 CLM_1929 7b321b2d6c736ccff45398ddba67042a 319 SUPERFAMILY SSF53613 11 309 1.87E-59 T 13-10-2018 IPR029056 Ribokinase-like CLM_1929 7b321b2d6c736ccff45398ddba67042a 319 Pfam PF00294 pfkB family carbohydrate kinase 9 298 1.9E-47 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CLM_1929 7b321b2d6c736ccff45398ddba67042a 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 253 266 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CLM_1929 7b321b2d6c736ccff45398ddba67042a 319 Gene3D G3DSA:3.40.1190.20 4 318 7.1E-83 T 13-10-2018 IPR029056 Ribokinase-like CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 SMART SM00387 368 473 5.3E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 Gene3D G3DSA:3.30.565.10 325 471 6.9E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 SUPERFAMILY SSF55874 329 462 1.57E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 SUPERFAMILY SSF158472 193 242 6.28E-9 T 13-10-2018 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 SUPERFAMILY SSF47384 245 321 3.53E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 Gene3D G3DSA:1.20.1480.50 153 249 4.6E-15 T 13-10-2018 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 SMART SM00388 258 325 1.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 321 7.5E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 SMART SM00304 191 243 6.8E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 370 469 3.2E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 Pfam PF00672 HAMP domain 193 239 4.7E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0715 07245fe5ee08b530f6da05aa9ad80ded 473 Gene3D G3DSA:1.10.287.130 250 324 3.0E-18 T 13-10-2018 CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 40 281 4.3E-76 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 SUPERFAMILY SSF50249 1 64 2.51E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 Pfam PF03193 RsgA GTPase 60 223 2.9E-58 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 Gene3D G3DSA:3.40.50.300 63 223 1.6E-46 T 13-10-2018 CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 SUPERFAMILY SSF52540 66 284 4.26E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 Pfam PF16745 RsgA N-terminal domain 2 57 7.7E-21 T 13-10-2018 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 Gene3D G3DSA:1.10.40.50 225 291 3.8E-20 T 13-10-2018 CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 Gene3D G3DSA:2.40.50.140 1 62 1.6E-22 T 13-10-2018 CLM_2803 3888fa28c7db4161d729c7e6205a345b 292 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 1 288 37.753 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CLM_0238 fa9e77d26105784c81a6a727287b8953 199 SMART SM00271 1 62 3.6E-22 T 13-10-2018 IPR001623 DnaJ domain CLM_0238 fa9e77d26105784c81a6a727287b8953 199 Gene3D G3DSA:1.25.40.10 92 168 1.4E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0238 fa9e77d26105784c81a6a727287b8953 199 SUPERFAMILY SSF46565 1 78 2.49E-22 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CLM_0238 fa9e77d26105784c81a6a727287b8953 199 Gene3D G3DSA:1.10.287.110 1 91 8.4E-22 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CLM_0238 fa9e77d26105784c81a6a727287b8953 199 PRINTS PR00625 DnaJ domain signature 22 37 4.1E-16 T 13-10-2018 IPR001623 DnaJ domain CLM_0238 fa9e77d26105784c81a6a727287b8953 199 PRINTS PR00625 DnaJ domain signature 42 62 4.1E-16 T 13-10-2018 IPR001623 DnaJ domain CLM_0238 fa9e77d26105784c81a6a727287b8953 199 PRINTS PR00625 DnaJ domain signature 4 22 4.1E-16 T 13-10-2018 IPR001623 DnaJ domain CLM_0238 fa9e77d26105784c81a6a727287b8953 199 Pfam PF00226 DnaJ domain 2 67 2.9E-19 T 13-10-2018 IPR001623 DnaJ domain CLM_0238 fa9e77d26105784c81a6a727287b8953 199 SUPERFAMILY SSF48452 102 150 5.24E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 48 59 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 SUPERFAMILY SSF47323 645 881 7.29E-57 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 SUPERFAMILY SSF47323 952 1033 4.05E-6 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 221 244 6.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 509 522 6.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 41 52 6.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 384 399 6.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 549 558 6.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 7 833 1.1E-292 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 619 6.3E-189 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 Gene3D G3DSA:3.90.740.10 197 390 5.5E-249 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 Pfam PF08264 Anticodon-binding domain of tRNA 676 827 4.8E-37 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 Gene3D G3DSA:1.10.730.10 631 819 5.7E-61 T 13-10-2018 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 Gene3D G3DSA:3.40.50.620 15 615 5.5E-249 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0142 f16fd248d99f15c692b36c801864a450 1038 SUPERFAMILY SSF52374 10 638 7.51E-135 T 13-10-2018 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 3 1038 14.182 T 13-10-2018 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_0142 f16fd248d99f15c692b36c801864a450 1038 SUPERFAMILY SSF50677 199 386 3.53E-51 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Gene3D G3DSA:3.30.450.20 180 306 5.0E-9 T 13-10-2018 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Gene3D G3DSA:1.10.287.130 435 518 3.5E-20 T 13-10-2018 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 671 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 599 613 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 634 652 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 627 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Gene3D G3DSA:3.30.450.20 307 434 9.0E-7 T 13-10-2018 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 563 671 8.5E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 SUPERFAMILY SSF47384 439 516 2.16E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Gene3D G3DSA:3.30.450.20 9 155 6.1E-5 T 13-10-2018 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 SMART SM00387 562 674 3.3E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Pfam PF00512 His Kinase A (phospho-acceptor) domain 449 516 2.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Pfam PF13188 PAS domain 183 214 0.09 T 13-10-2018 IPR000014 PAS domain CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Pfam PF13188 PAS domain 315 379 0.019 T 13-10-2018 IPR000014 PAS domain CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 Gene3D G3DSA:3.30.565.10 519 683 1.8E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 SMART SM00388 448 516 6.4E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_3129 7d09f19d62b1fcaf75c773d541f4556d 702 SUPERFAMILY SSF55874 505 670 5.76E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 SUPERFAMILY SSF56519 55 235 4.71E-44 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Gene3D G3DSA:3.90.1310.30 53 235 1.8E-44 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 SUPERFAMILY SSF54184 668 720 2.88E-9 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 SMART SM00740 600 660 1.5E-17 T 13-10-2018 IPR005543 PASTA domain CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 SMART SM00740 664 723 3.9E-9 T 13-10-2018 IPR005543 PASTA domain CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 SUPERFAMILY SSF56601 187 587 3.59E-99 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Gene3D G3DSA:3.30.10.20 602 661 1.2E-7 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Gene3D G3DSA:3.30.450.330 237 583 5.4E-112 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Pfam PF03717 Penicillin-binding Protein dimerisation domain 59 214 1.4E-22 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 SUPERFAMILY SSF54184 604 659 6.93E-12 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Gene3D G3DSA:3.40.710.10 303 500 5.4E-112 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 TIGRFAM TIGR02214 spoVD_pbp: stage V sporulation protein D 16 660 4.6E-267 T 13-10-2018 IPR011927 Stage V sporulation protein D CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Gene3D G3DSA:3.30.10.20 666 721 3.0E-5 T 13-10-2018 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 575 1.0E-81 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Pfam PF03793 PASTA domain 668 719 1.9E-9 T 13-10-2018 IPR005543 PASTA domain CLM_1693 344a270e4f1a0e631b5edd41c11db5ae 726 Pfam PF03793 PASTA domain 604 659 5.4E-13 T 13-10-2018 IPR005543 PASTA domain CLM_0034 9a5f5339773a97cb053b87f93733faac 145 Pfam PF14437 MafB19-like deaminase 4 145 1.3E-34 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CLM_0034 9a5f5339773a97cb053b87f93733faac 145 SUPERFAMILY SSF53927 3 143 2.84E-44 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_0034 9a5f5339773a97cb053b87f93733faac 145 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 87 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_0034 9a5f5339773a97cb053b87f93733faac 145 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 5 145 45.367 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CLM_0034 9a5f5339773a97cb053b87f93733faac 145 Gene3D G3DSA:3.40.140.10 1 145 7.0E-52 T 13-10-2018 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 SMART SM01193 7 137 3.7E-97 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PRINTS PR00148 Enolase signature 164 177 3.8E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PRINTS PR00148 Enolase signature 40 54 3.8E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PRINTS PR00148 Enolase signature 314 325 3.8E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PRINTS PR00148 Enolase signature 337 351 3.8E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PRINTS PR00148 Enolase signature 366 383 3.8E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PRINTS PR00148 Enolase signature 110 126 3.8E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 SMART SM01192 142 428 1.9E-227 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 7 428 2.4E-212 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 PIRSF PIRSF001400 3 428 7.1E-192 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 Gene3D G3DSA:3.30.390.10 5 130 1.2E-55 T 13-10-2018 IPR029017 Enolase-like, N-terminal CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 143 426 2.1E-136 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 Hamap MF_00318 Enolase [eno]. 5 414 45.179 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 SUPERFAMILY SSF51604 142 428 1.9E-132 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 Pfam PF03952 Enolase, N-terminal domain 7 137 1.1E-60 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 Gene3D G3DSA:3.20.20.120 133 431 6.1E-139 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 SUPERFAMILY SSF54826 6 142 2.57E-57 T 13-10-2018 CLM_0280 b22722de1756d2f3ac1a0f71303ed5ed 431 ProSitePatterns PS00164 Enolase signature. 337 350 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1117 4389b0571b3d26d8cab96244be893246 473 SUPERFAMILY SSF47384 238 321 2.55E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1117 4389b0571b3d26d8cab96244be893246 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 254 316 7.5E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1117 4389b0571b3d26d8cab96244be893246 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 471 3.5E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1117 4389b0571b3d26d8cab96244be893246 473 Gene3D G3DSA:1.10.287.130 194 315 5.7E-18 T 13-10-2018 CLM_1117 4389b0571b3d26d8cab96244be893246 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 455 1.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1117 4389b0571b3d26d8cab96244be893246 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 473 1.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1117 4389b0571b3d26d8cab96244be893246 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 417 1.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1117 4389b0571b3d26d8cab96244be893246 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 431 1.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1117 4389b0571b3d26d8cab96244be893246 473 SMART SM00388 253 321 1.1E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1117 4389b0571b3d26d8cab96244be893246 473 SUPERFAMILY SSF55874 311 473 5.06E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1117 4389b0571b3d26d8cab96244be893246 473 Gene3D G3DSA:3.30.565.10 325 473 2.7E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1117 4389b0571b3d26d8cab96244be893246 473 SMART SM00387 367 473 8.8E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0439 652b89ce1bebdb1e8787a480eced8e1d 200 PIRSF PIRSF006102 1 200 1.9E-74 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CLM_0439 652b89ce1bebdb1e8787a480eced8e1d 200 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 188 5.9E-67 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CLM_0439 652b89ce1bebdb1e8787a480eced8e1d 200 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 198 26.296 T 13-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 CLM_0439 652b89ce1bebdb1e8787a480eced8e1d 200 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 8 195 3.0E-81 T 13-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 SUPERFAMILY SSF53686 2 302 3.27E-106 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 Gene3D G3DSA:3.40.50.1100 5 298 3.1E-123 T 13-10-2018 CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 Gene3D G3DSA:3.40.50.1100 44 143 3.1E-123 T 13-10-2018 CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 302 5.4E-130 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 34 47 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 290 8.2E-73 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_0255 11ca63a3f6cc225e7c325f88828990d0 304 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 302 1.0E-132 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CLM_1332 48f6513bdbcad9415d0986eabd432d55 274 Gene3D G3DSA:3.40.190.10 41 265 7.7E-64 T 13-10-2018 CLM_1332 48f6513bdbcad9415d0986eabd432d55 274 SMART SM00062 39 267 5.5E-64 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1332 48f6513bdbcad9415d0986eabd432d55 274 Gene3D G3DSA:3.40.190.10 108 228 7.7E-64 T 13-10-2018 CLM_1332 48f6513bdbcad9415d0986eabd432d55 274 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 266 9.2E-60 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1332 48f6513bdbcad9415d0986eabd432d55 274 SUPERFAMILY SSF53850 8 267 1.98E-64 T 13-10-2018 CLM_0972 8b83dc14236cb60bce59e8290a51f5a2 83 Pfam PF13684 Dihydroxyacetone kinase family 3 79 8.7E-20 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Gene3D G3DSA:3.40.50.300 1032 1192 2.2E-49 T 13-10-2018 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1176 5.3E-49 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Gene3D G3DSA:3.40.50.300 1 255 5.7E-60 T 13-10-2018 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Gene3D G3DSA:1.20.1060.20 499 685 8.4E-65 T 13-10-2018 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 SUPERFAMILY SSF57997 293 489 2.55E-7 T 13-10-2018 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 SUPERFAMILY SSF75553 486 693 4.58E-52 T 13-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 SMART SM00968 526 642 2.0E-37 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1183 0.0 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Pfam PF06470 SMC proteins Flexible Hinge Domain 530 642 8.5E-28 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 PIRSF PIRSF005719 1 1191 4.6E-302 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 SUPERFAMILY SSF52540 1 1169 1.15E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1185 22.947 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CLM_2745 26757a9c1eef7598e4a02502789e01f0 1193 Gene3D G3DSA:3.30.70.1620 586 671 8.4E-65 T 13-10-2018 CLM_1798 ef9aa4532d183c2358ab4bd5895e19d0 219 SUPERFAMILY SSF52402 3 212 4.85E-67 T 13-10-2018 CLM_1798 ef9aa4532d183c2358ab4bd5895e19d0 219 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 206 1.1E-82 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CLM_1798 ef9aa4532d183c2358ab4bd5895e19d0 219 Pfam PF06508 Queuosine biosynthesis protein QueC 5 212 1.5E-85 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CLM_1798 ef9aa4532d183c2358ab4bd5895e19d0 219 PIRSF PIRSF006293 2 216 2.4E-77 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CLM_1798 ef9aa4532d183c2358ab4bd5895e19d0 219 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 217 48.544 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CLM_1798 ef9aa4532d183c2358ab4bd5895e19d0 219 Gene3D G3DSA:3.40.50.620 2 218 7.1E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2770 1811a84a008c58958c57b06428395bfe 335 Gene3D G3DSA:3.10.310.10 6 334 2.7E-136 T 13-10-2018 CLM_2770 1811a84a008c58958c57b06428395bfe 335 PIRSF PIRSF029792 1 335 8.4E-143 T 13-10-2018 IPR008794 Proline racemase family CLM_2770 1811a84a008c58958c57b06428395bfe 335 SUPERFAMILY SSF54506 1 332 8.3E-112 T 13-10-2018 CLM_2770 1811a84a008c58958c57b06428395bfe 335 Pfam PF05544 Proline racemase 10 333 5.0E-129 T 13-10-2018 IPR008794 Proline racemase family CLM_2770 1811a84a008c58958c57b06428395bfe 335 Gene3D G3DSA:3.10.310.10 146 311 2.7E-136 T 13-10-2018 CLM_3378 bc11aafbb76fd91268e79e2be334ab4b 189 SMART SM00471 15 143 4.6E-7 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3378 bc11aafbb76fd91268e79e2be334ab4b 189 SUPERFAMILY SSF109604 4 181 2.14E-30 T 13-10-2018 CLM_3378 bc11aafbb76fd91268e79e2be334ab4b 189 Pfam PF01966 HD domain 19 132 1.1E-9 T 13-10-2018 IPR006674 HD domain CLM_3378 bc11aafbb76fd91268e79e2be334ab4b 189 TIGRFAM TIGR00277 HDIG: HDIG domain 17 96 3.4E-7 T 13-10-2018 IPR006675 HDIG domain CLM_3378 bc11aafbb76fd91268e79e2be334ab4b 189 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 11 182 5.2E-48 T 13-10-2018 IPR005249 Conserved hypothetical protein CHP00488 CLM_3378 bc11aafbb76fd91268e79e2be334ab4b 189 Gene3D G3DSA:1.10.3210.10 1 188 2.3E-57 T 13-10-2018 CLM_0601 71a1c257bb045c5171e2e9573e487718 264 SMART SM00448 11 122 4.3E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0601 71a1c257bb045c5171e2e9573e487718 264 Gene3D G3DSA:3.40.50.2300 3 139 6.8E-32 T 13-10-2018 CLM_0601 71a1c257bb045c5171e2e9573e487718 264 SUPERFAMILY SSF52172 8 136 5.55E-33 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0601 71a1c257bb045c5171e2e9573e487718 264 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 150 258 3.2E-22 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 CLM_0601 71a1c257bb045c5171e2e9573e487718 264 Pfam PF00072 Response regulator receiver domain 13 123 8.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 SUPERFAMILY SSF55205 10 432 2.94E-98 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 430 2.6E-103 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 Gene3D G3DSA:3.65.10.10 14 430 8.9E-119 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 10 430 1.4E-90 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 PIRSF PIRSF000505 3 437 3.4E-107 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 Gene3D G3DSA:3.65.10.10 22 240 8.9E-119 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 ProSitePatterns PS00104 EPSP synthase signature 1. 88 102 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CLM_1710 39ac07a7e4c00c0472679965c2779e5f 442 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 441 28.725 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Gene3D G3DSA:2.40.50.100 5 101 9.3E-27 T 13-10-2018 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Gene3D G3DSA:4.10.320.10 114 165 4.5E-15 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Gene3D G3DSA:4.10.320.10 166 206 5.8E-9 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 SUPERFAMILY SSF47005 117 162 9.02E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Pfam PF02817 e3 binding domain 167 199 3.1E-7 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Pfam PF02817 e3 binding domain 123 157 1.8E-11 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 SUPERFAMILY SSF52777 216 436 4.27E-78 T 13-10-2018 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 215 435 2.7E-79 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Pfam PF00364 Biotin-requiring enzyme 7 76 5.2E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 SUPERFAMILY SSF47005 162 203 5.75E-6 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 SUPERFAMILY SSF51230 6 88 1.96E-23 T 13-10-2018 IPR011053 Single hybrid motif CLM_1874 ea1265718e5734df5ea8b21511cc9419 436 Gene3D G3DSA:3.30.559.10 207 434 7.2E-86 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 SMART SM00342 26 109 1.2E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 Gene3D G3DSA:1.10.10.60 63 118 1.2E-17 T 13-10-2018 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 78 93 1.1E-8 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 93 109 1.1E-8 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 SUPERFAMILY SSF46689 63 115 6.27E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 Gene3D G3DSA:1.10.10.60 3 62 1.6E-8 T 13-10-2018 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 63 105 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_0842 5f206e1299b547375846b0e34fee6da9 321 Pfam PF12833 Helix-turn-helix domain 32 110 4.3E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2102 f959908f0b9f99319c31c993bb8ec070 401 Pfam PF13742 OB-fold nucleic acid binding domain 6 100 6.5E-31 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 CLM_2102 f959908f0b9f99319c31c993bb8ec070 401 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 3 396 26.405 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CLM_2102 f959908f0b9f99319c31c993bb8ec070 401 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 7 395 5.9E-147 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CLM_2102 f959908f0b9f99319c31c993bb8ec070 401 Pfam PF02601 Exonuclease VII, large subunit 124 343 5.3E-74 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 CLM_2102 f959908f0b9f99319c31c993bb8ec070 401 Pfam PF02601 Exonuclease VII, large subunit 326 392 2.8E-10 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 SUPERFAMILY SSF46894 131 228 9.07E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 Pfam PF00072 Response regulator receiver domain 5 113 1.0E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 7.7E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 Gene3D G3DSA:3.40.50.2300 1 124 6.6E-32 T 13-10-2018 CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 SUPERFAMILY SSF52172 3 119 1.71E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 Gene3D G3DSA:1.10.10.10 125 230 7.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 SMART SM00862 152 227 4.7E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1569 1cdd4da01a997f978b458da1b05ac2da 233 SMART SM00448 3 113 2.3E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 328 8.4E-57 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 330 7.8E-128 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 5.6E-47 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 295 318 2.4E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 275 2.4E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 2.4E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 2.4E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 331 81.932 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 Gene3D G3DSA:3.40.50.1370 150 317 5.9E-142 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 Gene3D G3DSA:3.40.50.1370 4 327 5.9E-142 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 228 238 3.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 3.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 3.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 3.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 309 320 3.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CLM_2900 c483fb0efdc4ea66a9f38b343e1748f9 333 SUPERFAMILY SSF53671 1 332 4.19E-103 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 Gene3D G3DSA:1.10.10.10 12 96 2.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 PIRSF PIRSF019345 4 193 5.2E-54 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 Pfam PF04079 Segregation and condensation complex subunit ScpB 23 181 2.6E-56 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 Hamap MF_01804 Segregation and condensation protein B [scpB]. 11 193 31.087 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 SUPERFAMILY SSF46785 18 94 1.65E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 Gene3D G3DSA:1.10.10.10 97 193 2.9E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 SUPERFAMILY SSF46785 99 172 3.43E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2016 95e73dd36c53cc8f8c17b7aed3eba2f3 193 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 20 188 9.4E-47 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CLM_2912 1ba4c9e4a081e98aca830f8945d2c4a9 230 Gene3D G3DSA:1.10.150.650 51 122 1.2E-50 T 13-10-2018 CLM_2912 1ba4c9e4a081e98aca830f8945d2c4a9 230 Gene3D G3DSA:3.20.20.140 4 197 1.2E-50 T 13-10-2018 CLM_2912 1ba4c9e4a081e98aca830f8945d2c4a9 230 SUPERFAMILY SSF89550 3 204 8.83E-23 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_0391 36f2e398a719ebf36663a59799db8bf8 135 SUPERFAMILY SSF81301 7 97 9.82E-16 T 13-10-2018 CLM_0391 36f2e398a719ebf36663a59799db8bf8 135 Pfam PF01909 Nucleotidyltransferase domain 9 74 8.4E-12 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CLM_0391 36f2e398a719ebf36663a59799db8bf8 135 Gene3D G3DSA:3.30.460.10 1 107 2.2E-20 T 13-10-2018 CLM_3077 357dbe40ff9600bfb9f4c0f03e2bcc9f 394 Gene3D G3DSA:3.40.50.2000 203 376 1.9E-26 T 13-10-2018 CLM_3077 357dbe40ff9600bfb9f4c0f03e2bcc9f 394 Gene3D G3DSA:3.40.50.2000 17 202 1.2E-13 T 13-10-2018 CLM_3077 357dbe40ff9600bfb9f4c0f03e2bcc9f 394 Pfam PF00534 Glycosyl transferases group 1 199 369 3.7E-17 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_3077 357dbe40ff9600bfb9f4c0f03e2bcc9f 394 Pfam PF13439 Glycosyltransferase Family 4 24 191 1.4E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_3077 357dbe40ff9600bfb9f4c0f03e2bcc9f 394 SUPERFAMILY SSF53756 22 393 1.78E-49 T 13-10-2018 CLM_3960 3a5b63db378766b972c6803994116afb 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 4.6E-31 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal CLM_3960 3a5b63db378766b972c6803994116afb 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 2.0E-15 T 13-10-2018 CLM_3960 3a5b63db378766b972c6803994116afb 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 140 1.7E-65 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3960 3a5b63db378766b972c6803994116afb 141 SUPERFAMILY SSF46906 67 140 1.44E-27 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CLM_3960 3a5b63db378766b972c6803994116afb 141 SMART SM00649 9 140 3.2E-86 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CLM_3960 3a5b63db378766b972c6803994116afb 141 Gene3D G3DSA:1.10.10.250 72 140 1.1E-29 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CLM_3960 3a5b63db378766b972c6803994116afb 141 Gene3D G3DSA:3.30.1550.10 2 71 1.2E-34 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CLM_3960 3a5b63db378766b972c6803994116afb 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.829 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CLM_3960 3a5b63db378766b972c6803994116afb 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 1.2E-26 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CLM_3960 3a5b63db378766b972c6803994116afb 141 SUPERFAMILY SSF54747 3 72 8.11E-31 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Pfam PF00158 Sigma-54 interaction domain 327 494 6.5E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 594 611 2.0E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 611 631 2.0E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 541 550 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 SMART SM00382 347 491 1.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Gene3D G3DSA:1.10.10.60 574 629 1.6E-17 T 13-10-2018 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Gene3D G3DSA:3.30.450.20 188 312 2.2E-11 T 13-10-2018 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 414 429 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 351 364 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Gene3D G3DSA:3.30.450.40 3 187 8.8E-56 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Pfam PF13426 PAS domain 216 306 4.8E-6 T 13-10-2018 IPR000014 PAS domain CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 SUPERFAMILY SSF46689 541 630 7.77E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Pfam PF02954 Bacterial regulatory protein, Fis family 588 628 4.2E-15 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Gene3D G3DSA:3.40.50.300 316 498 1.6E-64 T 13-10-2018 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 SUPERFAMILY SSF52540 327 557 3.02E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 Gene3D G3DSA:1.10.8.60 499 565 2.1E-19 T 13-10-2018 CLM_2154 5ea21324a7599bf09dc36d7eb6581d07 631 SUPERFAMILY SSF55785 190 304 1.24E-8 T 13-10-2018 IPR035965 PAS domain superfamily CLM_0880 c1d6870670592874ff0bdb4569f80711 87 Pfam PF01381 Helix-turn-helix 10 56 1.1E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0880 c1d6870670592874ff0bdb4569f80711 87 SUPERFAMILY SSF47413 6 55 6.76E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0880 c1d6870670592874ff0bdb4569f80711 87 SMART SM00530 7 59 3.0E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0880 c1d6870670592874ff0bdb4569f80711 87 Gene3D G3DSA:1.10.260.40 6 84 4.7E-9 T 13-10-2018 CLM_4080 51a7f3ce1265814cba871d370f8942a6 161 PIRSF PIRSF030140 1 161 5.2E-59 T 13-10-2018 IPR016947 Uncharacterised phage-associated protein UCP030140 CLM_4080 51a7f3ce1265814cba871d370f8942a6 161 Pfam PF08761 dUTPase 2 161 2.6E-49 T 13-10-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 CLM_4080 51a7f3ce1265814cba871d370f8942a6 161 SUPERFAMILY SSF101386 2 161 1.18E-47 T 13-10-2018 CLM_4080 51a7f3ce1265814cba871d370f8942a6 161 Gene3D G3DSA:1.10.4010.10 1 161 4.8E-14 T 13-10-2018 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 Pfam PF00037 4Fe-4S binding domain 191 212 6.3E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 Pfam PF00037 4Fe-4S binding domain 161 183 1.7E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 139 155 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 SUPERFAMILY SSF54862 161 217 2.43E-17 T 13-10-2018 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 Gene3D G3DSA:3.30.70.20 159 213 2.2E-12 T 13-10-2018 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 SUPERFAMILY SSF55124 6 98 1.21E-19 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 SUPERFAMILY SSF56014 91 283 5.76E-37 T 13-10-2018 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 Gene3D G3DSA:3.30.70.3340 16 93 6.3E-6 T 13-10-2018 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 20 82 3.8E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1934 ec3c196c106a17bdf456a7d9c283e368 284 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 93 283 2.2E-29 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Gene3D G3DSA:3.40.50.1000 300 635 8.6E-300 T 13-10-2018 IPR023214 HAD superfamily CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Pfam PF00122 E1-E2 ATPase 99 283 7.7E-57 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 305 311 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 SUPERFAMILY SSF81660 309 500 1.37E-47 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 SUPERFAMILY SSF81665 6 842 8.24E-131 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 SUPERFAMILY SSF81653 102 203 3.01E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Pfam PF00689 Cation transporting ATPase, C-terminus 674 843 2.0E-49 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Pfam PF00702 haloacid dehalogenase-like hydrolase 301 604 9.1E-24 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Gene3D G3DSA:1.20.1110.10 43 842 8.6E-300 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 303 317 5.2E-39 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 614 626 5.2E-39 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 488 499 5.2E-39 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 150 164 5.2E-39 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 590 609 5.2E-39 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 510 520 5.2E-39 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Gene3D G3DSA:3.40.1110.10 313 495 8.6E-300 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Pfam PF00690 Cation transporter/ATPase, N-terminus 7 60 7.0E-18 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 TIGRFAM TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 5 833 2.1E-161 T 13-10-2018 IPR006408 P-type ATPase, subfamily IIB GO:0005388|GO:0005524|GO:0016020|GO:0070588 Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 TIGRFAM TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 42 840 7.9E-213 T 13-10-2018 IPR005782 P-type ATPase, subfamily IIA, SERCA-type GO:0005388|GO:0006816|GO:0016021 Reactome: R-HSA-1912420|Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 Gene3D G3DSA:2.70.150.10 6 206 8.6E-300 T 13-10-2018 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 SUPERFAMILY SSF56784 301 695 1.73E-55 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 562 578 1.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 622 647 1.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 590 606 1.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 450 468 1.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 562 680 1.8E-33 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 71 326 2.1E-52 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 393 535 7.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3000 c6125e748b78a63a930aead5ca2d52c9 848 SMART SM00831 2 65 7.8E-18 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_3655 9e19ef56b9851f01f02814d6ba7bb2c8 252 Gene3D G3DSA:3.30.420.40 93 231 4.7E-71 T 13-10-2018 CLM_3655 9e19ef56b9851f01f02814d6ba7bb2c8 252 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 4 247 8.9E-76 T 13-10-2018 IPR008275 CoA enzyme activase CLM_3655 9e19ef56b9851f01f02814d6ba7bb2c8 252 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 4 247 1.4E-54 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_3655 9e19ef56b9851f01f02814d6ba7bb2c8 252 Gene3D G3DSA:3.30.420.40 4 247 4.7E-71 T 13-10-2018 CLM_3655 9e19ef56b9851f01f02814d6ba7bb2c8 252 SUPERFAMILY SSF53067 2 247 6.51E-42 T 13-10-2018 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 Gene3D G3DSA:1.20.20.10 1 78 7.7E-28 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 Pfam PF00137 ATP synthase subunit C 13 75 7.3E-18 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 21 77 1.2E-20 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 PRINTS PR00124 ATP synthase C subunit signature 13 32 2.0E-24 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 PRINTS PR00124 ATP synthase C subunit signature 51 76 2.0E-24 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 PRINTS PR00124 ATP synthase C subunit signature 34 49 2.0E-24 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 76 15.741 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 41 62 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0195 d22f9ce81c627341bace1f4eb7ded38b 79 SUPERFAMILY SSF81333 6 78 8.24E-21 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Hamap MF_00953 DNA topoisomerase 3 [topB]. 3 640 60.51 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 186 204 3.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 386 402 3.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 514 528 3.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 304 313 3.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 100 113 3.9E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Gene3D G3DSA:2.70.20.10 210 480 1.0E-152 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Gene3D G3DSA:3.40.50.140 4 154 1.2E-51 T 13-10-2018 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 SMART SM00493 3 126 2.3E-15 T 13-10-2018 IPR006171 TOPRIM domain CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 SUPERFAMILY SSF56712 3 601 5.89E-180 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 298 313 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 TIGRFAM TIGR01056 topB: DNA topoisomerase III 4 729 8.5E-248 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 SMART SM00437 261 551 5.5E-91 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Gene3D G3DSA:1.10.460.10 160 595 1.0E-152 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Gene3D G3DSA:1.10.290.10 270 400 1.0E-152 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Pfam PF01131 DNA topoisomerase 152 584 7.8E-128 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 Pfam PF01751 Toprim domain 4 133 1.4E-13 T 13-10-2018 IPR006171 TOPRIM domain CLM_1448 b93b72669b9debec2b6405fc4c921b78 731 SMART SM00436 126 216 1.1E-40 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CLM_0591 569b43fff9b159e92492005a588a7740 217 Gene3D G3DSA:3.40.50.150 1 216 4.2E-66 T 13-10-2018 CLM_0591 569b43fff9b159e92492005a588a7740 217 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 26 210 9.6E-46 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CLM_0591 569b43fff9b159e92492005a588a7740 217 SUPERFAMILY SSF53335 27 213 1.33E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0591 569b43fff9b159e92492005a588a7740 217 Pfam PF02390 Putative methyltransferase 38 210 5.9E-40 T 13-10-2018 CLM_0591 569b43fff9b159e92492005a588a7740 217 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 217 25.327 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CLM_4135 2830e4d1dca0e24100c5c11d3eaee9d3 65 Pfam PF06107 Bacterial protein of unknown function (DUF951) 5 58 3.2E-31 T 13-10-2018 IPR009296 Protein of unknown function DUF951 CLM_4135 2830e4d1dca0e24100c5c11d3eaee9d3 65 PIRSF PIRSF037263 1 65 1.9E-34 T 13-10-2018 IPR009296 Protein of unknown function DUF951 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 39 377 1.4E-49 T 13-10-2018 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 Gene3D G3DSA:2.60.40.1180 35 440 3.4E-111 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 PRINTS PR00843 Glycosyl hydrolase family 30 signature 29 49 2.0E-6 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 PRINTS PR00843 Glycosyl hydrolase family 30 signature 65 91 2.0E-6 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 PRINTS PR00843 Glycosyl hydrolase family 30 signature 93 121 2.0E-6 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 PRINTS PR00843 Glycosyl hydrolase family 30 signature 160 177 2.0E-6 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 380 439 8.7E-12 T 13-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 Gene3D G3DSA:3.20.20.80 37 381 3.4E-111 T 13-10-2018 CLM_1353 4cafb23af8ef322e2ac99c7ddfbff7cb 442 SUPERFAMILY SSF51445 39 381 4.15E-71 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 642 55.251 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Pfam PF01751 Toprim domain 5 113 7.8E-31 T 13-10-2018 IPR006171 TOPRIM domain CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 SUPERFAMILY SSF57783 616 649 8.5E-5 T 13-10-2018 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Pfam PF01131 DNA topoisomerase 128 547 2.8E-136 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Gene3D G3DSA:1.10.460.10 135 550 2.9E-166 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 SUPERFAMILY SSF57783 573 613 4.59E-14 T 13-10-2018 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 611 3.6E-249 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Gene3D G3DSA:3.40.50.140 1 134 1.5E-53 T 13-10-2018 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Gene3D G3DSA:1.10.290.10 252 387 2.9E-166 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 SMART SM00437 244 510 1.5E-120 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Gene3D G3DSA:2.70.20.10 184 457 2.9E-166 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 SUPERFAMILY SSF56712 4 589 8.89E-199 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 295 304 1.2E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 473 487 1.2E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 1.2E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 1.2E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 372 388 1.2E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 SMART SM00493 3 103 2.5E-32 T 13-10-2018 IPR006171 TOPRIM domain CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 SMART SM00436 104 192 1.3E-49 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 577 612 1.2E-13 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 658 694 1.1E-4 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 617 655 4.8E-16 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 Gene3D G3DSA:3.30.65.10 559 617 2.2E-15 T 13-10-2018 CLM_2730 d364197d2f4d96fdc3d25dd6436961b7 696 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 281 304 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 1.7E-7 T 13-10-2018 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 PRINTS PR00173 Glutamate-aspartate symporter signature 46 66 1.7E-7 T 13-10-2018 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 1.7E-7 T 13-10-2018 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 PRINTS PR00173 Glutamate-aspartate symporter signature 273 299 1.7E-7 T 13-10-2018 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 SUPERFAMILY SSF118215 6 381 1.44E-78 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 Gene3D G3DSA:1.10.3860.10 1 385 9.8E-51 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_3702 e7e45209fc4fd766ab584d3a9e89385b 403 Pfam PF00375 Sodium:dicarboxylate symporter family 6 381 5.3E-73 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:2.40.50.140 222 319 5.6E-25 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 SMART SM00479 417 582 8.1E-53 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:1.10.150.870 1280 1416 2.3E-52 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Hamap MF_00356 DNA polymerase III PolC-type [polC]. 1 1432 401.594 T 13-10-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 SMART SM00481 333 400 4.7E-29 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:3.30.1900.20 966 1088 1.2E-57 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 415 629 4.6E-44 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 SUPERFAMILY SSF50249 237 312 2.4E-6 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Pfam PF11490 DNA polymerase III polC-type N-terminus II 89 200 2.3E-20 T 13-10-2018 IPR024754 DNA polymerase III polC-like, N-terminal domain II KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:1.10.100.20 988 1035 1.2E-57 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 TIGRFAM TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type 231 1430 0.0 T 13-10-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 819 1234 1.0E-89 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:3.30.420.10 413 554 2.9E-46 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:1.10.150.700 1228 1279 1.4E-13 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:1.10.150.700 1089 1181 1.2E-33 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Pfam PF00929 Exonuclease 419 573 5.3E-39 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 SUPERFAMILY SSF53098 417 870 5.16E-105 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Pfam PF14579 Helix-hairpin-helix motif 1342 1424 4.3E-13 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Pfam PF02811 PHP domain 334 690 8.0E-52 T 13-10-2018 IPR004013 PHP domain GO:0003824 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:3.20.20.140 555 796 4.6E-57 T 13-10-2018 CLM_2716 624568cd1f624b58f5df7d195cbab9ca 1432 Gene3D G3DSA:3.20.20.140 332 412 3.0E-27 T 13-10-2018 CLM_0390 f2cc4fc55a5266e8ef86647682547d8c 620 PIRSF PIRSF018968 1 616 3.0E-123 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 CLM_0390 f2cc4fc55a5266e8ef86647682547d8c 620 Pfam PF02687 FtsX-like permease family 85 174 1.9E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0977 cedbc774e4a55345868a005fecaf80a8 373 Gene3D G3DSA:3.90.1150.10 251 373 1.6E-41 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0977 cedbc774e4a55345868a005fecaf80a8 373 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 367 8.9E-115 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_0977 cedbc774e4a55345868a005fecaf80a8 373 SUPERFAMILY SSF53383 17 372 9.85E-113 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0977 cedbc774e4a55345868a005fecaf80a8 373 Gene3D G3DSA:3.40.640.10 1 249 6.3E-84 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0977 cedbc774e4a55345868a005fecaf80a8 373 PIRSF PIRSF000390 2 373 7.9E-103 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_0505 66d0ed9ce2a66722d70b66281578e1d9 275 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 3 264 44.431 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CLM_0505 66d0ed9ce2a66722d70b66281578e1d9 275 Gene3D G3DSA:3.20.20.60 2 274 1.2E-119 T 13-10-2018 CLM_0505 66d0ed9ce2a66722d70b66281578e1d9 275 SUPERFAMILY SSF51621 3 264 2.0E-110 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CLM_0505 66d0ed9ce2a66722d70b66281578e1d9 275 PIRSF PIRSF000388 1 267 3.2E-115 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CLM_0505 66d0ed9ce2a66722d70b66281578e1d9 275 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 260 3.4E-119 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CLM_0505 66d0ed9ce2a66722d70b66281578e1d9 275 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 4 265 9.0E-108 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CLM_3873 7b336155bddcc0cf21b5cbc055b9b6c7 279 SUPERFAMILY SSF102215 5 257 1.11E-40 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 CLM_3873 7b336155bddcc0cf21b5cbc055b9b6c7 279 Gene3D G3DSA:3.40.50.10310 1 259 2.5E-50 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 CLM_3873 7b336155bddcc0cf21b5cbc055b9b6c7 279 Pfam PF02633 Creatinine amidohydrolase 8 253 1.2E-44 T 13-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 82 295 3.3E-89 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 4 508 1.9E-227 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 SUPERFAMILY SSF53649 3 508 1.83E-77 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 PIRSF PIRSF001492 1 509 9.0E-216 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 4 509 51.464 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 Gene3D G3DSA:3.40.1450.10 77 309 4.7E-233 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 SUPERFAMILY SSF64158 77 307 1.23E-87 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 Gene3D G3DSA:3.40.720.10 5 508 4.7E-233 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CLM_0279 b6faa4161eb4e7e0695cee21e9fdc50f 509 Pfam PF01676 Metalloenzyme superfamily 4 497 1.3E-80 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CLM_2839 7603851df8219cac2666336f0c71977b 369 Pfam PF12327 FtsZ family, C-terminal domain 222 316 2.0E-37 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal CLM_2839 7603851df8219cac2666336f0c71977b 369 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 359 39.298 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 CLM_2839 7603851df8219cac2666336f0c71977b 369 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 173 7.5E-43 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 Gene3D G3DSA:3.30.1330.20 221 335 1.2E-42 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CLM_2839 7603851df8219cac2666336f0c71977b 369 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 332 1.1E-137 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 CLM_2839 7603851df8219cac2666336f0c71977b 369 SMART SM00864 13 205 4.0E-116 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 SMART SM00865 207 324 2.0E-59 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 PRINTS PR00423 Cell division protein FtsZ signature 98 118 8.2E-51 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 PRINTS PR00423 Cell division protein FtsZ signature 212 233 8.2E-51 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 PRINTS PR00423 Cell division protein FtsZ signature 126 147 8.2E-51 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 PRINTS PR00423 Cell division protein FtsZ signature 189 211 8.2E-51 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 SUPERFAMILY SSF52490 12 208 1.03E-71 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 Gene3D G3DSA:3.40.50.1440 4 219 3.5E-83 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 CLM_2839 7603851df8219cac2666336f0c71977b 369 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CLM_2839 7603851df8219cac2666336f0c71977b 369 SUPERFAMILY SSF55307 204 319 1.56E-45 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 CLM_0226 e3ee9798b3667bfb1f9c815b23ffb7f2 197 Gene3D G3DSA:1.10.1760.20 3 197 2.2E-57 T 13-10-2018 CLM_0226 e3ee9798b3667bfb1f9c815b23ffb7f2 197 PIRSF PIRSF037778 2 197 1.2E-51 T 13-10-2018 IPR025720 ECF transporter, Riboflavin transporter RibU GO:0005886|GO:0032217|GO:0032218 CLM_0226 e3ee9798b3667bfb1f9c815b23ffb7f2 197 Pfam PF12822 ECF transporter, substrate-specific component 7 186 9.6E-31 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 Gene3D G3DSA:2.30.170.50 1 69 1.5E-32 T 13-10-2018 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.0E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.0E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.0E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 1.5E-31 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 Pfam PF01197 Ribosomal protein L31 1 65 1.1E-32 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 28.868 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_0178 ecd50257711350dd1d2bdf446f9d6c18 72 SUPERFAMILY SSF143800 1 66 7.06E-27 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1419 6568856d319d073bf43bf9e87a9eb9cd 106 Gene3D G3DSA:3.40.30.10 1 105 1.8E-25 T 13-10-2018 CLM_1419 6568856d319d073bf43bf9e87a9eb9cd 106 Pfam PF00085 Thioredoxin 3 104 9.3E-23 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CLM_1419 6568856d319d073bf43bf9e87a9eb9cd 106 PIRSF PIRSF000077 1 105 4.0E-23 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CLM_1419 6568856d319d073bf43bf9e87a9eb9cd 106 SUPERFAMILY SSF52833 4 104 1.33E-27 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_1419 6568856d319d073bf43bf9e87a9eb9cd 106 ProSitePatterns PS00194 Thioredoxin family active site. 21 39 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CLM_0857 12f1563e67cb51bd58b1389b547e95ce 488 Gene3D G3DSA:1.10.287.950 186 488 6.5E-49 T 13-10-2018 CLM_0857 12f1563e67cb51bd58b1389b547e95ce 488 SUPERFAMILY SSF58104 220 485 4.97E-50 T 13-10-2018 CLM_0857 12f1563e67cb51bd58b1389b547e95ce 488 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 282 414 8.6E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0857 12f1563e67cb51bd58b1389b547e95ce 488 SMART SM00283 216 463 2.2E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 Gene3D G3DSA:3.40.50.620 1 223 1.4E-88 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3759 92cc01b710920195798d0de33af5e6ea 407 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 2 406 44.082 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 SUPERFAMILY SSF52374 3 319 1.43E-105 T 13-10-2018 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 Gene3D G3DSA:1.10.240.10 224 325 1.4E-36 T 13-10-2018 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 50 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 Pfam PF00579 tRNA synthetases class I (W and Y) 30 319 3.1E-84 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 Pfam PF01479 S4 domain 343 385 1.3E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 3 406 4.7E-137 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 SUPERFAMILY SSF55174 303 406 2.22E-18 T 13-10-2018 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 Gene3D G3DSA:3.10.290.10 326 407 3.0E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 214 226 5.0E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 44 66 5.0E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 181 203 5.0E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_3759 92cc01b710920195798d0de33af5e6ea 407 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 160 175 5.0E-25 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_2103 cd305624c4217fff7105f596a34c34f1 143 Gene3D G3DSA:1.10.940.10 1 143 3.6E-44 T 13-10-2018 IPR035926 NusB-like superfamily CLM_2103 cd305624c4217fff7105f596a34c34f1 143 SUPERFAMILY SSF48013 2 142 7.19E-38 T 13-10-2018 IPR035926 NusB-like superfamily CLM_2103 cd305624c4217fff7105f596a34c34f1 143 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 1 143 21.58 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 CLM_2103 cd305624c4217fff7105f596a34c34f1 143 Pfam PF01029 NusB family 4 142 2.0E-42 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CLM_2103 cd305624c4217fff7105f596a34c34f1 143 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 2 142 1.0E-44 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 152 301 3.9E-30 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 SUPERFAMILY SSF53671 2 305 9.82E-101 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 259 268 4.8E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 4.8E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 48 67 4.8E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 4.8E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 5 304 5.7E-104 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 38 60 8.4E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 77 86 8.4E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 8.4E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 224 233 8.4E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 131 148 8.4E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 263 268 8.4E-37 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 4 306 35.767 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 Gene3D G3DSA:3.40.50.1370 5 301 1.1E-109 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 144 9.9E-47 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 Gene3D G3DSA:3.40.50.1370 132 291 1.1E-109 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_3653 2f55afa1abca72d17349c01d88ef8c74 307 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 48 55 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_2733 d5fbe434eda3b429b37660fddd8c3c8b 123 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 6 119 1.2E-24 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CLM_2733 d5fbe434eda3b429b37660fddd8c3c8b 123 Pfam PF02021 Uncharacterised protein family UPF0102 12 103 2.3E-28 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CLM_2733 d5fbe434eda3b429b37660fddd8c3c8b 123 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 116 22.948 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CLM_2733 d5fbe434eda3b429b37660fddd8c3c8b 123 SUPERFAMILY SSF52980 11 109 1.05E-24 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CLM_2733 d5fbe434eda3b429b37660fddd8c3c8b 123 Gene3D G3DSA:3.40.1350.10 11 123 4.9E-31 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CLM_2181 eab71c3bfe3e8130ac42c01b16ea50c8 389 Gene3D G3DSA:3.40.640.10 68 290 2.0E-139 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2181 eab71c3bfe3e8130ac42c01b16ea50c8 389 Gene3D G3DSA:3.90.1150.10 13 382 2.0E-139 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2181 eab71c3bfe3e8130ac42c01b16ea50c8 389 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 386 2.7E-140 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 CLM_2181 eab71c3bfe3e8130ac42c01b16ea50c8 389 Pfam PF00155 Aminotransferase class I and II 95 381 7.6E-32 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_2181 eab71c3bfe3e8130ac42c01b16ea50c8 389 SUPERFAMILY SSF53383 1 388 1.63E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2324 1149dcfca8fdd98a6739b85f0cab2ef4 117 SUPERFAMILY SSF143414 45 109 1.83E-15 T 13-10-2018 IPR037233 CcmK-like superfamily CLM_2324 1149dcfca8fdd98a6739b85f0cab2ef4 117 Pfam PF00936 BMC domain 46 106 2.5E-15 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2324 1149dcfca8fdd98a6739b85f0cab2ef4 117 SMART SM00877 45 117 3.3E-21 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2324 1149dcfca8fdd98a6739b85f0cab2ef4 117 Gene3D G3DSA:3.30.70.1710 4 117 2.8E-47 T 13-10-2018 CLM_2324 1149dcfca8fdd98a6739b85f0cab2ef4 117 PIRSF PIRSF012296 3 117 2.4E-53 T 13-10-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 2547 2810 8.89E-55 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.300.30 2175 2276 9.0E-31 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.300.30 667 767 8.4E-31 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.300.30 3199 3299 8.4E-31 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF13193 AMP-binding enzyme C-terminal domain 3212 3285 3.8E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF13193 AMP-binding enzyme C-terminal domain 2188 2261 8.0E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF13193 AMP-binding enzyme C-terminal domain 680 753 3.8E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 ProSitePatterns PS00455 Putative AMP-binding domain signature. 412 423 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.30 2541 2785 4.5E-139 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2312 2327 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.10 2375 2734 4.5E-139 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 16 236 8.34E-19 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.10 3380 3558 2.2E-53 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.10 848 1026 1.6E-52 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 1044 1288 2.45E-33 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF47336 3306 3376 5.76E-16 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 294 696 6.8E-132 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1812 2204 8.4E-124 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2846 3228 1.9E-130 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.30 1027 1293 3.1E-61 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.30 3559 3825 3.4E-61 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3336 3351 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00501 AMP-binding enzyme 2825 3204 1.1E-99 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00501 AMP-binding enzyme 273 672 2.9E-99 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00501 AMP-binding enzyme 1791 2180 3.0E-92 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF47336 2280 2353 2.62E-18 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF56801 1750 2301 3.79E-144 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 3397 3568 9.34E-29 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 865 1036 2.56E-28 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 1513 1777 1.11E-43 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 3576 3819 3.45E-33 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.30 17 258 2.4E-25 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:1.10.1200.10 2277 2359 1.1E-23 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:1.10.1200.10 3301 3379 5.9E-19 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:1.10.1200.10 769 847 5.9E-19 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.10 1329 1702 2.2E-119 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF56801 2788 3325 3.53E-152 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 ProSitePatterns PS00012 Phosphopantetheine attachment site. 804 819 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00550 Phosphopantetheine attachment site 2289 2353 3.7E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00550 Phosphopantetheine attachment site 3315 3376 1.5E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00550 Phosphopantetheine attachment site 783 844 1.5E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.30.559.30 1508 1767 2.2E-119 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1928 1939 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF56801 231 793 2.88E-148 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00668 Condensation domain 2370 2805 1.7E-126 T 13-10-2018 IPR001242 Condensation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00668 Condensation domain 858 1304 1.4E-107 T 13-10-2018 IPR001242 Condensation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00668 Condensation domain 1324 1771 8.7E-119 T 13-10-2018 IPR001242 Condensation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00668 Condensation domain 14 253 1.9E-24 T 13-10-2018 IPR001242 Condensation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Pfam PF00668 Condensation domain 3390 3834 1.2E-107 T 13-10-2018 IPR001242 Condensation domain CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1164 1311 3.5E-48 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3696 3842 1.7E-48 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2962 2973 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF47336 774 844 5.76E-16 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 1329 1506 1.09E-40 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.40.50.12780 1776 2174 1.1E-126 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.40.50.12780 2810 3198 6.0E-130 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 Gene3D G3DSA:3.40.50.12780 259 666 1.6E-128 T 13-10-2018 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SMART SM00823 Phosphopantetheine attachment site 3312 3380 0.064 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SMART SM00823 Phosphopantetheine attachment site 780 848 0.064 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CLM_0374 f020020b9371cf752fe880d59df3ec6e 3852 SUPERFAMILY SSF52777 2376 2537 7.67E-37 T 13-10-2018 CLM_0539 4798018eb0fc4569a5077ebb9951fa41 245 Gene3D G3DSA:3.40.50.300 1 241 1.4E-62 T 13-10-2018 CLM_0539 4798018eb0fc4569a5077ebb9951fa41 245 SUPERFAMILY SSF52540 3 239 3.52E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0539 4798018eb0fc4569a5077ebb9951fa41 245 Pfam PF00005 ABC transporter 20 167 6.1E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0539 4798018eb0fc4569a5077ebb9951fa41 245 SMART SM00382 28 216 2.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0539 4798018eb0fc4569a5077ebb9951fa41 245 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 217 239 7.9E-7 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 SUPERFAMILY SSF54999 5 102 9.16E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 SMART SM01403 7 101 4.4E-57 T 13-10-2018 IPR027486 Ribosomal protein S10 domain CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 Gene3D G3DSA:3.30.70.600 1 102 9.2E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.3E-45 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.3E-19 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.3E-19 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.3E-19 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 8.8E-35 T 13-10-2018 IPR027486 Ribosomal protein S10 domain CLM_3949 bcf3b02927b249e48e3ad930c34eb497 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.709 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 Gene3D G3DSA:1.10.220.30 1 86 6.3E-20 T 13-10-2018 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 229 249 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 251 271 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 36 62 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 275 301 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 198 223 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 117 140 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PRINTS PR00954 Flagellar motor switch protein FliG signature 7 23 3.4E-74 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 SUPERFAMILY SSF48029 117 328 3.01E-66 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 Gene3D G3DSA:1.10.220.30 105 197 4.9E-32 T 13-10-2018 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 Pfam PF01706 FliG C-terminal domain 220 327 9.2E-41 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 Pfam PF14841 FliG middle domain 118 191 7.7E-30 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 5 337 1.5E-128 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 PIRSF PIRSF003161 1 337 7.2E-117 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 Pfam PF14842 FliG N-terminal domain 6 109 2.7E-32 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 SUPERFAMILY SSF48029 8 107 1.96E-20 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical CLM_3027 9f5eb2eb827f34997cc760880e2a7dd8 337 Gene3D G3DSA:1.10.220.30 198 337 7.9E-47 T 13-10-2018 CLM_2650 33bf22ebcfe5bf119a6ebdb16089d015 154 SUPERFAMILY SSF69279 7 148 2.89E-47 T 13-10-2018 CLM_2650 33bf22ebcfe5bf119a6ebdb16089d015 154 Gene3D G3DSA:2.30.110.40 3 147 1.3E-51 T 13-10-2018 IPR038628 XkdM-like superfamily CLM_2650 33bf22ebcfe5bf119a6ebdb16089d015 154 Pfam PF09393 Phage tail tube protein 4 145 5.2E-52 T 13-10-2018 IPR018989 Phage tail tube protein CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 SUPERFAMILY SSF52172 3 128 1.21E-38 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 Gene3D G3DSA:3.40.50.2300 1 130 1.6E-36 T 13-10-2018 CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 SMART SM00448 4 115 1.1E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 2.6E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 Pfam PF00072 Response regulator receiver domain 6 116 1.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 SUPERFAMILY SSF46894 132 231 3.97E-30 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 Gene3D G3DSA:1.10.10.10 135 233 8.2E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2139 d9566c4c72f4aac0a525a238e8b2d3d1 233 SMART SM00862 155 231 2.1E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 Gene3D G3DSA:3.20.20.10 31 288 7.2E-151 T 13-10-2018 IPR029066 PLP-binding barrel CLM_3780 445894ce5524f248debd51e21e80d4cd 422 SUPERFAMILY SSF50621 270 422 2.3E-47 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 Gene3D G3DSA:2.40.37.10 10 418 7.2E-151 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 4 422 9.8E-143 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 189 202 1.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 278 297 1.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 1.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 379 392 1.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 1.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 12 422 38.448 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 307 325 4.0E-22 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 389 411 4.0E-22 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 72 89 4.0E-22 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 161 170 4.0E-22 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 SUPERFAMILY SSF51419 24 290 1.26E-79 T 13-10-2018 IPR029066 PLP-binding barrel CLM_3780 445894ce5524f248debd51e21e80d4cd 422 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 289 379 2.2E-16 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CLM_3780 445894ce5524f248debd51e21e80d4cd 422 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 34 288 2.9E-63 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 Gene3D G3DSA:3.30.70.980 85 237 1.3E-54 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 Gene3D G3DSA:3.30.70.980 134 204 1.3E-54 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 Pfam PF01709 Transcriptional regulator 5 238 1.0E-97 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 36.785 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 Gene3D G3DSA:1.10.10.200 1 80 7.4E-32 T 13-10-2018 IPR017856 Integrase-like, N-terminal CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 239 1.2E-99 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CLM_3478 4add6c8e5b044ff40037ce6885f07138 246 SUPERFAMILY SSF75625 3 244 2.88E-96 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CLM_3578 d6c9310adbdad1ab14918eb24ee70bc7 251 SMART SM00382 38 226 3.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3578 d6c9310adbdad1ab14918eb24ee70bc7 251 Gene3D G3DSA:3.40.50.300 1 251 2.1E-61 T 13-10-2018 CLM_3578 d6c9310adbdad1ab14918eb24ee70bc7 251 SUPERFAMILY SSF52540 4 235 2.15E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3578 d6c9310adbdad1ab14918eb24ee70bc7 251 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3578 d6c9310adbdad1ab14918eb24ee70bc7 251 Pfam PF00005 ABC transporter 30 177 3.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Gene3D G3DSA:3.80.10.10 321 461 1.3E-24 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SUPERFAMILY SSF69304 1259 1337 7.06E-5 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 677 698 71.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 919 943 11.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 354 375 220.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 181 202 2.2 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 225 246 190.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 611 632 5.9 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 633 654 56.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 699 727 250.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 655 676 190.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 247 267 120.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 270 289 110.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 897 918 200.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00365 203 224 110.0 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SUPERFAMILY SSF52058 581 753 2.72E-32 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SUPERFAMILY SSF52058 353 548 6.21E-27 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Gene3D G3DSA:3.80.10.10 117 318 1.1E-42 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Gene3D G3DSA:3.80.10.10 761 999 3.4E-30 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Gene3D G3DSA:3.80.10.10 558 760 5.0E-42 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Pfam PF07532 Bacterial Ig-like domain (group 4) 1011 1068 6.4E-18 T 13-10-2018 IPR011081 Bacterial Ig-related CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SUPERFAMILY SSF52058 812 974 1.45E-22 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SUPERFAMILY SSF52058 159 316 8.84E-29 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Pfam PF12799 Leucine Rich repeats (2 copies) 635 674 5.3E-7 T 13-10-2018 IPR025875 Leucine rich repeat 4 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Pfam PF12799 Leucine Rich repeats (2 copies) 270 301 1.3E-7 T 13-10-2018 IPR025875 Leucine rich repeat 4 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Pfam PF16472 Domain of unknown function (DUF5050) 1088 1349 7.5E-50 T 13-10-2018 IPR032485 Domain of unknown function DUF5050 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 897 918 270.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 461 481 81.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 655 676 92.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 699 722 260.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 203 224 99.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 611 636 31.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 376 397 290.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 677 698 34.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SMART SM00369 919 944 86.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Gene3D G3DSA:2.120.10.30 1145 1350 7.1E-9 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 SUPERFAMILY SSF69304 1091 1280 1.57E-12 T 13-10-2018 CLM_1940 ec346d5f292df127cc3d0712d7e84a06 1355 Gene3D G3DSA:3.80.10.10 462 557 2.7E-12 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_1269 4e696d78d2e0b39b55b033d59709e159 319 SUPERFAMILY SSF55729 2 142 6.36E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1269 4e696d78d2e0b39b55b033d59709e159 319 Gene3D G3DSA:3.40.630.30 4 299 1.3E-93 T 13-10-2018 CLM_1269 4e696d78d2e0b39b55b033d59709e159 319 SUPERFAMILY SSF55729 143 300 1.48E-49 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1269 4e696d78d2e0b39b55b033d59709e159 319 PIRSF PIRSF018688 1 303 9.4E-84 T 13-10-2018 IPR016732 Uncharacterised conserved protein UCP018688 CLM_1269 4e696d78d2e0b39b55b033d59709e159 319 Gene3D G3DSA:3.40.630.30 130 296 1.3E-93 T 13-10-2018 CLM_1269 4e696d78d2e0b39b55b033d59709e159 319 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 26 300 2.1E-44 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 SUPERFAMILY SSF53254 1 195 2.75E-55 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 Gene3D G3DSA:3.40.50.1240 1 202 2.3E-58 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 PIRSF PIRSF000709 1 177 8.2E-21 T 13-10-2018 CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 193 4.5E-53 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 3 186 1.6E-63 T 13-10-2018 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 SMART SM00855 2 161 1.3E-20 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CLM_0961 8087bf2df7e4682c5fe33fa485b882f8 204 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 CLM_1999 8a2d73b25f4956c880a091da37d673c0 233 Pfam PF05857 TraX protein 5 229 1.8E-43 T 13-10-2018 IPR008875 TraX CLM_0412 4d5f7fd1151e2f7554627366719473a0 360 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 130 2.4E-13 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 CLM_0412 4d5f7fd1151e2f7554627366719473a0 360 SUPERFAMILY SSF53092 3 130 2.27E-12 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_0412 4d5f7fd1151e2f7554627366719473a0 360 Pfam PF00557 Metallopeptidase family M24 138 343 2.3E-58 T 13-10-2018 IPR000994 Peptidase M24 CLM_0412 4d5f7fd1151e2f7554627366719473a0 360 Gene3D G3DSA:3.90.230.10 131 360 7.5E-74 T 13-10-2018 CLM_0412 4d5f7fd1151e2f7554627366719473a0 360 SUPERFAMILY SSF55920 133 360 3.01E-70 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CLM_0412 4d5f7fd1151e2f7554627366719473a0 360 Gene3D G3DSA:3.40.350.10 1 130 4.7E-20 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_1868 230dc69d9b33b334c273fdebca145794 482 Pfam PF13786 Domain of unknown function (DUF4179) 53 142 3.3E-21 T 13-10-2018 IPR025436 Domain of unknown function DUF4179 CLM_1868 230dc69d9b33b334c273fdebca145794 482 Gene3D G3DSA:2.60.40.1630 83 233 1.1E-17 T 13-10-2018 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 Pfam PF00005 ABC transporter 20 191 5.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 Pfam PF00005 ABC transporter 341 469 1.6E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 SUPERFAMILY SSF52540 4 246 3.53E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 Gene3D G3DSA:3.40.50.300 289 515 1.3E-42 T 13-10-2018 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 Gene3D G3DSA:3.40.50.300 3 285 1.3E-66 T 13-10-2018 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 Pfam PF12848 ABC transporter 230 315 1.5E-21 T 13-10-2018 IPR032781 ABC-transporter extension domain CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 SUPERFAMILY SSF52540 307 505 3.0E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 SMART SM00382 28 238 1.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2006 2f9a6153f7932dbf810fb92b84a27baf 518 SMART SM00382 349 518 2.3E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SUPERFAMILY SSF54106 7 52 5.36E-12 T 13-10-2018 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Gene3D G3DSA:3.10.50.10 403 458 7.8E-74 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SUPERFAMILY SSF51445 193 494 1.79E-42 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SUPERFAMILY SSF54106 54 97 4.71E-11 T 13-10-2018 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 ProSitePatterns PS01095 Chitinases family 18 active site. 288 296 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Pfam PF01476 LysM domain 9 51 9.2E-16 T 13-10-2018 IPR018392 LysM domain CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Pfam PF01476 LysM domain 55 97 2.3E-13 T 13-10-2018 IPR018392 LysM domain CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Pfam PF08239 Bacterial SH3 domain 109 155 1.0E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SMART SM00636 170 487 1.2E-7 T 13-10-2018 IPR011583 Chitinase II GO:0008061 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Gene3D G3DSA:2.30.30.40 102 163 1.4E-10 T 13-10-2018 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SMART SM00287 99 161 4.2E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SMART SM00257 54 97 2.6E-14 T 13-10-2018 IPR018392 LysM domain CLM_1367 637e2c64661a7ea09d796b9969111c23 504 SMART SM00257 8 51 1.0E-17 T 13-10-2018 IPR018392 LysM domain CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Pfam PF00704 Glycosyl hydrolases family 18 253 486 4.3E-26 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Gene3D G3DSA:3.10.350.10 3 53 1.5E-16 T 13-10-2018 IPR036779 LysM domain superfamily CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Gene3D G3DSA:3.20.20.80 215 492 7.8E-74 T 13-10-2018 CLM_1367 637e2c64661a7ea09d796b9969111c23 504 Gene3D G3DSA:3.10.350.10 54 97 5.1E-15 T 13-10-2018 IPR036779 LysM domain superfamily CLM_2465 96f54c1003bc2146469167a3cdb9fcb8 242 SUPERFAMILY SSF56281 23 238 2.62E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2465 96f54c1003bc2146469167a3cdb9fcb8 242 Pfam PF00753 Metallo-beta-lactamase superfamily 24 224 3.5E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_2465 96f54c1003bc2146469167a3cdb9fcb8 242 Gene3D G3DSA:3.60.15.10 8 242 2.2E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2465 96f54c1003bc2146469167a3cdb9fcb8 242 SMART SM00849 19 224 6.1E-31 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SUPERFAMILY SSF47807 172 288 6.13E-35 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SMART SM00482 632 839 8.6E-115 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SMART SM00475 2 263 1.4E-130 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Gene3D G3DSA:1.10.150.20 175 248 1.5E-103 T 13-10-2018 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 ProSitePatterns PS00447 DNA polymerase family A signature. 701 720 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Gene3D G3DSA:1.20.1060.10 491 603 3.3E-39 T 13-10-2018 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SUPERFAMILY SSF88723 3 171 8.13E-56 T 13-10-2018 IPR029060 PIN-like domain superfamily CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Gene3D G3DSA:3.40.50.1010 6 280 1.5E-103 T 13-10-2018 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 171 3.7E-53 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SUPERFAMILY SSF53098 305 467 1.97E-24 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Gene3D G3DSA:1.10.150.20 656 799 2.1E-106 T 13-10-2018 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Gene3D G3DSA:3.30.70.370 610 871 2.1E-106 T 13-10-2018 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SMART SM00279 174 209 4.6E-17 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 172 264 4.2E-35 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Gene3D G3DSA:3.30.420.10 300 489 5.7E-23 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Pfam PF01612 3'-5' exonuclease 314 440 4.7E-5 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 Pfam PF00476 DNA polymerase family A 500 873 1.2E-153 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 TIGRFAM TIGR00593 pola: DNA polymerase I 6 875 1.7E-302 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 SUPERFAMILY SSF56672 470 875 4.0E-151 T 13-10-2018 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 601 623 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 835 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 760 771 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 624 639 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 647 670 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 701 726 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 677 690 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 738 749 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3411 681f9bbe94e2851b200f084d58ba2340 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 792 808 1.7E-74 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 Pfam PF12848 ABC transporter 226 295 1.5E-12 T 13-10-2018 IPR032781 ABC-transporter extension domain CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 Pfam PF00005 ABC transporter 20 187 8.0E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 Gene3D G3DSA:3.40.50.300 282 555 1.0E-59 T 13-10-2018 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 Pfam PF16326 ABC transporter C-terminal domain 561 626 4.3E-11 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 SUPERFAMILY SSF52540 5 233 1.86E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 Gene3D G3DSA:3.40.50.300 1 281 5.1E-68 T 13-10-2018 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 SMART SM00382 343 513 2.4E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 SMART SM00382 28 232 1.2E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 Pfam PF00005 ABC transporter 336 469 1.1E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1224 75e1d25a74ecbd65c0c4d6b635118c94 639 SUPERFAMILY SSF52540 311 523 5.48E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0956 7b509696dcca60be291999de3371818d 826 SUPERFAMILY SSF53850 345 821 6.15E-102 T 13-10-2018 CLM_0956 7b509696dcca60be291999de3371818d 826 Gene3D G3DSA:1.10.287.950 33 336 3.2E-55 T 13-10-2018 CLM_0956 7b509696dcca60be291999de3371818d 826 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 391 413 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CLM_0956 7b509696dcca60be291999de3371818d 826 Gene3D G3DSA:3.10.105.10 587 801 2.1E-106 T 13-10-2018 CLM_0956 7b509696dcca60be291999de3371818d 826 SMART SM00283 63 324 1.9E-41 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0956 7b509696dcca60be291999de3371818d 826 Gene3D G3DSA:3.90.76.10 358 508 2.1E-106 T 13-10-2018 CLM_0956 7b509696dcca60be291999de3371818d 826 SUPERFAMILY SSF58104 32 334 2.62E-58 T 13-10-2018 CLM_0956 7b509696dcca60be291999de3371818d 826 Gene3D G3DSA:3.40.190.10 509 814 2.1E-106 T 13-10-2018 CLM_0956 7b509696dcca60be291999de3371818d 826 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 385 744 5.0E-67 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CLM_0956 7b509696dcca60be291999de3371818d 826 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 110 290 1.8E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1221 b6a7e5fedc645a794ebfb71b4d9f87b8 268 SUPERFAMILY SSF56281 13 244 1.19E-28 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1221 b6a7e5fedc645a794ebfb71b4d9f87b8 268 Gene3D G3DSA:3.60.15.10 1 264 2.3E-75 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1221 b6a7e5fedc645a794ebfb71b4d9f87b8 268 Pfam PF00753 Metallo-beta-lactamase superfamily 21 93 1.2E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_4008 0840941dea1eda9e6a75316419c19d63 258 Pfam PF03309 Type III pantothenate kinase 2 205 1.9E-74 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CLM_4008 0840941dea1eda9e6a75316419c19d63 258 Gene3D G3DSA:3.30.420.40 89 258 6.1E-58 T 13-10-2018 CLM_4008 0840941dea1eda9e6a75316419c19d63 258 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 258 36.994 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CLM_4008 0840941dea1eda9e6a75316419c19d63 258 SUPERFAMILY SSF53067 123 257 6.26E-35 T 13-10-2018 CLM_4008 0840941dea1eda9e6a75316419c19d63 258 SUPERFAMILY SSF53067 1 121 6.47E-40 T 13-10-2018 CLM_4008 0840941dea1eda9e6a75316419c19d63 258 Gene3D G3DSA:3.30.420.40 1 88 6.7E-35 T 13-10-2018 CLM_4008 0840941dea1eda9e6a75316419c19d63 258 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 253 1.8E-75 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 Gene3D G3DSA:3.30.2350.10 79 313 4.9E-48 T 13-10-2018 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 SUPERFAMILY SSF55174 11 59 1.31E-5 T 13-10-2018 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 Pfam PF01479 S4 domain 12 58 1.6E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 SMART SM00363 12 95 0.0016 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 8 295 2.6E-59 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 Gene3D G3DSA:3.10.290.10 1 64 2.7E-13 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 Pfam PF00849 RNA pseudouridylate synthase 87 246 4.5E-27 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 137 151 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1596 ffc86c8524eb6dc06182b5a42f6df0f8 317 SUPERFAMILY SSF55120 73 292 3.08E-47 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 SUPERFAMILY SSF46785 3 70 1.09E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 SUPERFAMILY SSF53383 62 438 3.39E-66 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 Gene3D G3DSA:3.40.640.10 69 438 1.8E-79 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 Gene3D G3DSA:1.10.10.10 1 68 3.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 SMART SM00345 7 66 3.5E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 Pfam PF00155 Aminotransferase class I and II 98 369 2.3E-21 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_2230 15516b8b32286958027e7a5be75a2a6b 448 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 4.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 Gene3D G3DSA:1.10.8.410 227 275 5.8E-29 T 13-10-2018 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 4.2E-41 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 Gene3D G3DSA:1.20.1330.10 48 226 1.1E-64 T 13-10-2018 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 SUPERFAMILY SSF64518 1 275 1.05E-92 T 13-10-2018 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 PRINTS PR00207 Flagellin signature 35 52 3.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 PRINTS PR00207 Flagellin signature 109 132 3.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 PRINTS PR00207 Flagellin signature 74 93 3.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3097 a3dca5c74a22da4feb05442e3eb60c6e 275 Pfam PF00700 Bacterial flagellin C-terminal helical region 190 274 1.8E-30 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Gene3D G3DSA:2.170.190.11 50 148 3.9E-95 T 13-10-2018 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Pfam PF03454 MoeA C-terminal region (domain IV) 344 406 4.0E-10 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Gene3D G3DSA:2.40.340.10 337 408 1.6E-16 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 184 321 4.2E-32 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 174 1.7E-38 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 260 295 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 SMART SM00852 187 326 6.0E-39 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 SUPERFAMILY SSF53218 184 330 1.09E-37 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Gene3D G3DSA:3.40.980.10 182 324 3.9E-95 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Pfam PF00994 Probable molybdopterin binding domain 187 323 8.1E-25 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 Gene3D G3DSA:3.90.105.10 27 181 3.9E-95 T 13-10-2018 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 SUPERFAMILY SSF63882 6 182 1.07E-46 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2159 bbe4a775f74283b4c973187a7180c9ce 408 SUPERFAMILY SSF63867 337 408 1.44E-12 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_1820 1d61f4c7d4e22f0b4f5f1b543893b886 416 PRINTS PR00175 Sodium/alanine symporter signature 188 207 4.8E-6 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1820 1d61f4c7d4e22f0b4f5f1b543893b886 416 PRINTS PR00175 Sodium/alanine symporter signature 385 405 4.8E-6 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1820 1d61f4c7d4e22f0b4f5f1b543893b886 416 PRINTS PR00175 Sodium/alanine symporter signature 328 350 4.8E-6 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1820 1d61f4c7d4e22f0b4f5f1b543893b886 416 PRINTS PR00175 Sodium/alanine symporter signature 68 90 4.8E-6 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1820 1d61f4c7d4e22f0b4f5f1b543893b886 416 Pfam PF01235 Sodium:alanine symporter family 37 406 2.2E-25 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1902 30cd9202cec6e434f101c57bdff1a920 446 Pfam PF00860 Permease family 34 403 4.9E-29 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_1735 238d7b46fe00dd38a280532efe891b73 320 SMART SM00382 26 230 5.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1735 238d7b46fe00dd38a280532efe891b73 320 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1735 238d7b46fe00dd38a280532efe891b73 320 Pfam PF00005 ABC transporter 17 165 3.1E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1735 238d7b46fe00dd38a280532efe891b73 320 SMART SM00930 247 320 1.7E-4 T 13-10-2018 IPR018449 NIL domain CLM_1735 238d7b46fe00dd38a280532efe891b73 320 SUPERFAMILY SSF52540 1 227 2.42E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1735 238d7b46fe00dd38a280532efe891b73 320 SUPERFAMILY SSF55021 244 319 2.86E-6 T 13-10-2018 CLM_1735 238d7b46fe00dd38a280532efe891b73 320 Gene3D G3DSA:3.40.50.300 1 268 6.3E-75 T 13-10-2018 CLM_1735 238d7b46fe00dd38a280532efe891b73 320 Pfam PF09383 NIL domain 260 317 3.9E-5 T 13-10-2018 IPR018449 NIL domain CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 Pfam PF00106 short chain dehydrogenase 3 189 4.9E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 5.6E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 5.6E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 5.6E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 5.6E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.6E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 1.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 1.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 Gene3D G3DSA:3.40.50.720 4 261 2.3E-48 T 13-10-2018 CLM_2443 27272fdfa00a4ced7ef7da97f7c92a0f 265 SUPERFAMILY SSF51735 3 247 4.32E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3182 e3cbe3a467afaddc43188044355eb055 411 SUPERFAMILY SSF54862 128 400 7.18E-21 T 13-10-2018 CLM_3182 e3cbe3a467afaddc43188044355eb055 411 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 378 389 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3182 e3cbe3a467afaddc43188044355eb055 411 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 6 319 1.4E-58 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CLM_3182 e3cbe3a467afaddc43188044355eb055 411 Gene3D G3DSA:3.30.70.20 309 409 2.2E-21 T 13-10-2018 CLM_3182 e3cbe3a467afaddc43188044355eb055 411 Pfam PF01180 Dihydroorotate dehydrogenase 6 302 9.7E-33 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CLM_3182 e3cbe3a467afaddc43188044355eb055 411 SUPERFAMILY SSF51395 3 320 3.13E-65 T 13-10-2018 CLM_3182 e3cbe3a467afaddc43188044355eb055 411 Pfam PF14697 4Fe-4S dicluster domain 339 394 3.1E-19 T 13-10-2018 CLM_3182 e3cbe3a467afaddc43188044355eb055 411 Gene3D G3DSA:3.20.20.70 6 308 8.7E-94 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3380 e450db87b30834ef1a45096a5de87759 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 2 96 2.9E-25 T 13-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 CLM_3380 e450db87b30834ef1a45096a5de87759 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 85 7.7E-22 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CLM_3380 e450db87b30834ef1a45096a5de87759 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 95 7.0E-29 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CLM_3380 e450db87b30834ef1a45096a5de87759 97 Gene3D G3DSA:3.30.110.60 1 97 1.5E-34 T 13-10-2018 IPR035920 YhbY-like superfamily CLM_3380 e450db87b30834ef1a45096a5de87759 97 SUPERFAMILY SSF75471 1 95 5.49E-30 T 13-10-2018 IPR035920 YhbY-like superfamily CLM_3380 e450db87b30834ef1a45096a5de87759 97 SMART SM01103 2 85 2.2E-39 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CLM_0846 bb3f6599cadac2316d69d2fc976747ad 69 Pfam PF01381 Helix-turn-helix 7 61 7.1E-18 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0846 bb3f6599cadac2316d69d2fc976747ad 69 SUPERFAMILY SSF47413 5 65 1.1E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0846 bb3f6599cadac2316d69d2fc976747ad 69 SMART SM00530 6 61 9.2E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0846 bb3f6599cadac2316d69d2fc976747ad 69 Gene3D G3DSA:1.10.260.40 2 67 1.1E-27 T 13-10-2018 CLM_1514 01b6f5e1af06c3c01e4d4c2424184acf 304 Pfam PF01497 Periplasmic binding protein 56 277 8.8E-34 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_1514 01b6f5e1af06c3c01e4d4c2424184acf 304 Gene3D G3DSA:3.40.50.1980 52 166 5.6E-33 T 13-10-2018 CLM_1514 01b6f5e1af06c3c01e4d4c2424184acf 304 SUPERFAMILY SSF53807 37 300 4.32E-63 T 13-10-2018 CLM_1514 01b6f5e1af06c3c01e4d4c2424184acf 304 Gene3D G3DSA:3.40.50.1980 167 300 4.4E-30 T 13-10-2018 CLM_3391 be6a5300ae4fa938cdc3d8cfd2762648 372 Pfam PF01098 Cell cycle protein 20 368 1.8E-98 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3391 be6a5300ae4fa938cdc3d8cfd2762648 372 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 10 370 24.891 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3391 be6a5300ae4fa938cdc3d8cfd2762648 372 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 325 349 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3391 be6a5300ae4fa938cdc3d8cfd2762648 372 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 16 368 1.3E-116 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 ProSitePatterns PS00177 DNA topoisomerase II signature. 443 451 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 333 349 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 211 224 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 196 211 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 491 500 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 610 622 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 237 259 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 626 642 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 395 415 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 11 21 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR01159 DNA gyrase subunit B signature 381 395 9.7E-45 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 SUPERFAMILY SSF56719 421 648 1.26E-73 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 SMART SM00433 40 650 1.4E-261 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 586 645 1.6E-27 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 SMART SM00387 36 191 7.8E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 190 2.9E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3138 d296b8af0bacede7bedf081a435a8534 651 SUPERFAMILY SSF55874 12 233 4.06E-61 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3138 d296b8af0bacede7bedf081a435a8534 651 SUPERFAMILY SSF54211 238 411 4.55E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Pfam PF00204 DNA gyrase B 238 411 3.8E-52 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Gene3D G3DSA:3.40.50.670 427 651 2.8E-86 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Gene3D G3DSA:3.30.565.10 22 239 1.2E-81 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 40 55 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 75 88 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 589 605 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 441 455 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 525 542 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 118 132 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 507 523 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 545 557 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 PRINTS PR00418 DNA topoisomerase II family signature 289 302 1.8E-67 T 13-10-2018 CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Pfam PF01751 Toprim domain 441 549 1.6E-16 T 13-10-2018 IPR006171 TOPRIM domain CLM_3138 d296b8af0bacede7bedf081a435a8534 651 Gene3D G3DSA:3.30.230.10 240 419 5.0E-56 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 SMART SM00283 395 670 2.3E-66 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 Gene3D G3DSA:1.10.287.950 379 670 1.9E-63 T 13-10-2018 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 SMART SM00304 314 366 1.5E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 Gene3D G3DSA:1.20.1480.50 278 372 3.3E-14 T 13-10-2018 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 SUPERFAMILY SSF58104 334 670 4.19E-68 T 13-10-2018 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 Pfam PF02743 Cache domain 36 277 2.0E-30 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 Gene3D G3DSA:3.30.450.20 156 277 5.9E-25 T 13-10-2018 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 473 624 2.9E-39 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2763 7a2fa99e51189d9181163fb4f1fc5f07 672 Pfam PF00672 HAMP domain 315 359 4.7E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 Gene3D G3DSA:2.40.50.140 1 96 2.3E-23 T 13-10-2018 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 TIGRFAM TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase 15 429 3.6E-135 T 13-10-2018 IPR004523 Aspartate-tRNA synthetase, type 2 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 344 360 4.3E-19 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 197 210 4.3E-19 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 180 192 4.3E-19 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 384 398 4.3E-19 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 SUPERFAMILY SSF50249 5 98 1.69E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 SUPERFAMILY SSF55681 98 427 5.19E-82 T 13-10-2018 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 Hamap MF_02075 Aspartate--tRNA(Asp) ligase [aspS]. 1 429 39.71 T 13-10-2018 IPR004523 Aspartate-tRNA synthetase, type 2 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 Gene3D G3DSA:3.30.930.10 98 418 5.7E-104 T 13-10-2018 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 Pfam PF01336 OB-fold nucleic acid binding domain 17 90 1.4E-12 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CLM_1174 1166c56b6d093cae4bb1c2a40db94a2c 429 Pfam PF00152 tRNA synthetases class II (D, K and N) 111 419 3.9E-79 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3519 be578ad84211d8b08bf72ecfedc624fd 298 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 263 5.1E-126 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 CLM_3519 be578ad84211d8b08bf72ecfedc624fd 298 Gene3D G3DSA:3.90.550.10 1 290 3.0E-95 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3519 be578ad84211d8b08bf72ecfedc624fd 298 SUPERFAMILY SSF53448 1 276 3.55E-69 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3519 be578ad84211d8b08bf72ecfedc624fd 298 Pfam PF00483 Nucleotidyl transferase 5 266 1.1E-33 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CLM_1737 a63e1efcd67a8fe515ed8e7525de884a 272 SUPERFAMILY SSF53850 43 272 8.33E-47 T 13-10-2018 CLM_1737 a63e1efcd67a8fe515ed8e7525de884a 272 Gene3D G3DSA:3.40.190.10 126 229 2.7E-61 T 13-10-2018 CLM_1737 a63e1efcd67a8fe515ed8e7525de884a 272 Gene3D G3DSA:3.40.190.10 47 270 2.7E-61 T 13-10-2018 CLM_1737 a63e1efcd67a8fe515ed8e7525de884a 272 Pfam PF03180 NLPA lipoprotein 43 271 1.1E-50 T 13-10-2018 IPR004872 Lipoprotein NlpA family CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Pfam PF04122 Putative cell wall binding repeat 2 33 119 9.4E-21 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Pfam PF04122 Putative cell wall binding repeat 2 226 313 1.9E-17 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Pfam PF04122 Putative cell wall binding repeat 2 132 217 5.9E-22 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Pfam PF16800 IseA DL-endopeptidase inhibitor 323 466 5.2E-42 T 13-10-2018 IPR031841 DL-endopeptidase inhibitor IseA CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Gene3D G3DSA:3.40.50.12090 155 244 8.7E-9 T 13-10-2018 CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Gene3D G3DSA:3.40.50.12090 55 151 1.2E-9 T 13-10-2018 CLM_0526 d173ad745770ff94c22feeb7c1d6adf3 471 Gene3D G3DSA:3.10.450.420 323 468 5.4E-7 T 13-10-2018 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Gene3D G3DSA:3.40.50.300 815 1016 5.0E-44 T 13-10-2018 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Gene3D G3DSA:3.40.50.300 494 814 1.0E-49 T 13-10-2018 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 479 5.6E-79 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 SUPERFAMILY SSF52980 1067 1272 5.9E-38 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Gene3D G3DSA:3.40.50.300 285 492 8.7E-28 T 13-10-2018 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Gene3D G3DSA:3.40.50.300 1 173 1.5E-38 T 13-10-2018 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 SUPERFAMILY SSF52540 4 941 1.25E-111 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Gene3D G3DSA:3.90.320.10 1044 1278 2.6E-76 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Pfam PF13361 UvrD-like helicase C-terminal domain 491 936 2.7E-34 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 TIGRFAM TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit 450 1277 6.4E-265 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Hamap MF_01451 ATP-dependent helicase/nuclease subunit A [addA]. 3 1278 19.528 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 CLM_0518 2902725f811f7ccde849cac1dfb25f50 1279 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1097 1263 1.9E-10 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLM_1856 3c3b68d14c7ddf9ba7161525929777f1 68 Pfam PF04284 Protein of unknown function (DUF441) 5 64 6.3E-8 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame CLM_0629 1aa6efd7f928e98359fa238ccd99da88 457 Pfam PF13520 Amino acid permease 11 411 3.9E-57 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0629 1aa6efd7f928e98359fa238ccd99da88 457 Gene3D G3DSA:1.20.1740.10 6 455 7.3E-94 T 13-10-2018 CLM_0629 1aa6efd7f928e98359fa238ccd99da88 457 PIRSF PIRSF006060 1 453 2.7E-72 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 SMART SM00382 276 461 2.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 SMART SM00382 27 223 1.6E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 SUPERFAMILY SSF52540 2 218 1.06E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 Pfam PF00005 ABC transporter 267 412 1.6E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 Gene3D G3DSA:3.40.50.300 2 247 7.4E-57 T 13-10-2018 CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 Gene3D G3DSA:3.40.50.300 248 476 8.1E-64 T 13-10-2018 CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 Pfam PF00005 ABC transporter 19 169 5.2E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2189 51b2fd07d9e4823a32e0e599d5aca34c 477 SUPERFAMILY SSF52540 239 474 8.15E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3014 83b54fe51e872fc1063973afb6575992 258 Pfam PF00813 FliP family 61 253 2.6E-83 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 179 191 9.7E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 129 143 9.7E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 117 129 9.7E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 57 66 9.7E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 157 169 9.7E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 247 257 9.7E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 234 246 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 186 201 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 61 257 4.2E-88 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 207 228 1.3E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 59 78 1.3E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 231 256 1.3E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 78 98 1.3E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 186 206 1.3E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3014 83b54fe51e872fc1063973afb6575992 258 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 98 117 1.3E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Pfam PF06480 FtsH Extracellular 18 104 6.8E-9 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 ProSitePatterns PS00674 AAA-protein family signature. 303 321 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 13 617 35.077 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 114 601 1.8E-208 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Gene3D G3DSA:1.20.58.760 414 621 2.1E-72 T 13-10-2018 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 SMART SM00382 197 335 6.2E-25 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 SUPERFAMILY SSF52540 162 416 1.83E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Gene3D G3DSA:2.40.50.920 34 114 1.3E-6 T 13-10-2018 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Gene3D G3DSA:3.40.50.300 149 334 9.0E-69 T 13-10-2018 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Gene3D G3DSA:1.10.8.60 335 411 4.7E-25 T 13-10-2018 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 332 1.4E-45 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 SUPERFAMILY SSF140990 414 605 1.23E-70 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CLM_3787 189c7ad882da7b59ef54a04013a462b8 658 Pfam PF01434 Peptidase family M41 394 600 6.9E-72 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CLM_3652 b20293e9caa1770b749c9767408d780c 146 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 4 92 1.0E-26 T 13-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal CLM_3652 b20293e9caa1770b749c9767408d780c 146 Gene3D G3DSA:2.30.30.20 94 146 6.5E-15 T 13-10-2018 CLM_3652 b20293e9caa1770b749c9767408d780c 146 SUPERFAMILY SSF54893 1 93 8.89E-32 T 13-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily CLM_3652 b20293e9caa1770b749c9767408d780c 146 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 95 142 6.3E-16 T 13-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal CLM_3652 b20293e9caa1770b749c9767408d780c 146 SUPERFAMILY SSF57825 95 143 7.72E-16 T 13-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily CLM_3652 b20293e9caa1770b749c9767408d780c 146 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 2 90 4.9E-29 T 13-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal CLM_3652 b20293e9caa1770b749c9767408d780c 146 Gene3D G3DSA:3.30.70.140 1 93 7.0E-29 T 13-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily CLM_3652 b20293e9caa1770b749c9767408d780c 146 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 1 145 27.525 T 13-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 CLM_4132 7b64796cd5658b433dcf938bd7840960 148 Hamap MF_00984 Single-stranded DNA-binding protein. 1 106 34.547 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CLM_4132 7b64796cd5658b433dcf938bd7840960 148 Pfam PF00436 Single-strand binding protein family 1 102 3.7E-36 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CLM_4132 7b64796cd5658b433dcf938bd7840960 148 PIRSF PIRSF002070 1 147 1.4E-38 T 13-10-2018 CLM_4132 7b64796cd5658b433dcf938bd7840960 148 Gene3D G3DSA:2.40.50.140 1 111 1.6E-42 T 13-10-2018 CLM_4132 7b64796cd5658b433dcf938bd7840960 148 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 125 1.3E-36 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CLM_4132 7b64796cd5658b433dcf938bd7840960 148 SUPERFAMILY SSF50249 1 148 5.14E-48 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1215 eb7c8ee8cfe7fcd65fc45e67fe999880 680 Gene3D G3DSA:3.40.30.10 4 175 1.5E-75 T 13-10-2018 CLM_1215 eb7c8ee8cfe7fcd65fc45e67fe999880 680 Gene3D G3DSA:1.50.10.10 385 584 1.9E-9 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CLM_1215 eb7c8ee8cfe7fcd65fc45e67fe999880 680 Pfam PF03190 Protein of unknown function, DUF255 6 167 7.3E-79 T 13-10-2018 IPR004879 Domain of unknown function DUF255 CLM_1215 eb7c8ee8cfe7fcd65fc45e67fe999880 680 PIRSF PIRSF006402 1 679 1.0E-246 T 13-10-2018 IPR024705 Spermatogenesis-associated protein 20 CLM_1215 eb7c8ee8cfe7fcd65fc45e67fe999880 680 SUPERFAMILY SSF48208 185 535 2.99E-84 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CLM_1215 eb7c8ee8cfe7fcd65fc45e67fe999880 680 SUPERFAMILY SSF52833 6 145 1.26E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_3265 d85830e48e908706298f707f5208170b 297 Pfam PF00753 Metallo-beta-lactamase superfamily 18 204 1.1E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3265 d85830e48e908706298f707f5208170b 297 Gene3D G3DSA:3.60.15.10 1 230 1.1E-33 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3265 d85830e48e908706298f707f5208170b 297 SUPERFAMILY SSF56281 3 250 1.44E-38 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3265 d85830e48e908706298f707f5208170b 297 SMART SM00849 16 204 3.2E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0571 0a5efb82317f646dc315ca4b10941e43 338 Gene3D G3DSA:2.130.10.10 23 172 6.9E-7 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CLM_0571 0a5efb82317f646dc315ca4b10941e43 338 Gene3D G3DSA:2.120.10.30 203 337 1.7E-6 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_0571 0a5efb82317f646dc315ca4b10941e43 338 SUPERFAMILY SSF82171 49 262 4.32E-10 T 13-10-2018 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 SUPERFAMILY SSF56784 2 227 1.95E-45 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 Gene3D G3DSA:1.10.150.240 16 100 5.5E-71 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 111 124 2.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 189 202 2.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 158 2.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 2.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 225 4.1E-70 T 13-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 199 1.9E-28 T 13-10-2018 CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 Gene3D G3DSA:3.40.50.1000 5 223 5.5E-71 T 13-10-2018 IPR023214 HAD superfamily CLM_1123 e9982dc9adf03f626e82bf61068606e9 230 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 194 1.6E-14 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1870 afe461f67bca076370552a9ca7f9b398 123 Pfam PF09585 Conserved hypothetical protein (Lin0512_fam) 8 120 3.1E-38 T 13-10-2018 IPR011719 Conserved hypothetical protein CHP02058 CLM_1870 afe461f67bca076370552a9ca7f9b398 123 TIGRFAM TIGR02058 lin0512_fam: conserved hypothetical protein 7 120 3.0E-25 T 13-10-2018 IPR011719 Conserved hypothetical protein CHP02058 CLM_1870 afe461f67bca076370552a9ca7f9b398 123 Gene3D G3DSA:3.30.1330.20 4 123 2.4E-39 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 CLM_0540 cb158567abb2a2c4a440dbfed135cf76 233 SMART SM00382 26 212 6.6E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0540 cb158567abb2a2c4a440dbfed135cf76 233 Gene3D G3DSA:3.40.50.300 1 233 8.7E-57 T 13-10-2018 CLM_0540 cb158567abb2a2c4a440dbfed135cf76 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0540 cb158567abb2a2c4a440dbfed135cf76 233 Pfam PF00005 ABC transporter 17 161 6.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0540 cb158567abb2a2c4a440dbfed135cf76 233 SUPERFAMILY SSF52540 3 227 6.91E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 SUPERFAMILY SSF52540 5 555 6.25E-249 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 2 557 48.958 T 13-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 329 340 - T 13-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 Gene3D G3DSA:3.30.1510.10 130 248 1.2E-210 T 13-10-2018 CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 Pfam PF01268 Formate--tetrahydrofolate ligase 3 557 3.0E-274 T 13-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 104 114 - T 13-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 Gene3D G3DSA:3.10.410.10 444 533 6.2E-37 T 13-10-2018 CLM_4009 1b0f2acc8319c6dad5302f313d20adb2 557 Gene3D G3DSA:3.40.50.300 7 439 1.2E-210 T 13-10-2018 CLM_0368 51f776497bf2ba33bb8d54fefcfe99cd 433 Pfam PF14501 GHKL domain 328 429 7.5E-27 T 13-10-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain CLM_0368 51f776497bf2ba33bb8d54fefcfe99cd 433 Gene3D G3DSA:3.30.565.10 283 432 6.5E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0368 51f776497bf2ba33bb8d54fefcfe99cd 433 SUPERFAMILY SSF55874 297 424 2.19E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0368 51f776497bf2ba33bb8d54fefcfe99cd 433 SUPERFAMILY SSF55890 236 303 4.32E-11 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 CLM_0368 51f776497bf2ba33bb8d54fefcfe99cd 433 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 235 291 2.4E-13 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Gene3D G3DSA:1.10.1420.10 398 534 5.3E-105 T 13-10-2018 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 SUPERFAMILY SSF48334 264 565 7.59E-92 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Pfam PF05192 MutS domain III 266 558 1.5E-45 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 3 920 25.355 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 SUPERFAMILY SSF52540 566 801 4.87E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Pfam PF00488 MutS domain V 611 800 1.2E-87 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Gene3D G3DSA:3.40.1170.10 1 117 4.6E-46 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 PIRSF PIRSF037677 844 930 49.0 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 PIRSF PIRSF037677 1 846 8.1E-179 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Pfam PF05188 MutS domain II 124 249 6.9E-12 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 SMART SM00533 281 590 8.2E-106 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 SUPERFAMILY SSF53150 113 277 9.94E-31 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Gene3D G3DSA:3.40.50.300 567 886 7.2E-105 T 13-10-2018 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Pfam PF01624 MutS domain I 4 115 3.1E-43 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 SMART SM00534 608 797 7.1E-124 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Gene3D G3DSA:1.10.1420.10 263 558 5.3E-105 T 13-10-2018 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Gene3D G3DSA:3.30.420.110 123 257 1.3E-19 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 689 705 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 Pfam PF05190 MutS family domain IV 426 517 4.9E-31 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 SUPERFAMILY SSF55271 2 111 7.19E-41 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CLM_1957 488db16c70d0ada155b9c21fc701f806 932 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 3 817 4.8E-303 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 196 42.268 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 Gene3D G3DSA:3.30.230.40 1 91 1.3E-34 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 SUPERFAMILY SSF54211 6 88 3.04E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 SUPERFAMILY SSF54211 89 181 4.55E-37 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 6.3E-66 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CLM_1809 33bdfcd1de565da1d495f0b84ac4149b 196 Gene3D G3DSA:3.30.230.40 92 196 4.2E-39 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 SUPERFAMILY SSF51011 539 687 3.24E-22 T 13-10-2018 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Gene3D G3DSA:3.20.20.80 330 468 3.2E-12 T 13-10-2018 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Pfam PF01229 Glycosyl hydrolases family 39 481 659 4.5E-9 T 13-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Gene3D G3DSA:1.10.10.60 172 220 9.1E-10 T 13-10-2018 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 255 1.7E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 271 1.7E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 SUPERFAMILY SSF51182 23 98 2.22E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Pfam PF12833 Helix-turn-helix domain 195 272 7.4E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Gene3D G3DSA:1.10.10.60 221 278 7.2E-20 T 13-10-2018 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 SUPERFAMILY SSF51445 331 551 2.99E-12 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Pfam PF07883 Cupin domain 24 75 1.7E-6 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Gene3D G3DSA:2.60.120.10 4 85 7.2E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 SMART SM00342 188 271 6.5E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 225 267 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 Gene3D G3DSA:2.60.40.1500 534 686 9.4E-27 T 13-10-2018 CLM_3148 e42bc2dae4580bcec2770b7103ada587 688 SUPERFAMILY SSF46689 225 275 1.39E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1256 28c9970b882bc69b25e78bcdb56d1135 214 SUPERFAMILY SSF109604 29 206 2.01E-19 T 13-10-2018 CLM_1256 28c9970b882bc69b25e78bcdb56d1135 214 SMART SM00471 63 198 4.8E-4 T 13-10-2018 IPR003607 HD/PDEase domain CLM_1256 28c9970b882bc69b25e78bcdb56d1135 214 Pfam PF01966 HD domain 68 186 1.1E-10 T 13-10-2018 IPR006674 HD domain CLM_1256 28c9970b882bc69b25e78bcdb56d1135 214 Gene3D G3DSA:1.10.3210.10 48 213 4.9E-12 T 13-10-2018 CLM_1256 28c9970b882bc69b25e78bcdb56d1135 214 TIGRFAM TIGR00277 HDIG: HDIG domain 66 144 1.1E-8 T 13-10-2018 IPR006675 HDIG domain CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 48 1123 28.202 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SUPERFAMILY SSF52540 16 364 2.46E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Gene3D G3DSA:3.40.50.300 499 1009 1.8E-245 T 13-10-2018 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Gene3D G3DSA:3.40.50.300 563 802 1.8E-245 T 13-10-2018 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Pfam PF00270 DEAD/DEAH box helicase 626 785 1.1E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Pfam PF03461 TRCF domain 1025 1114 2.2E-26 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 157 1098 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SUPERFAMILY SSF52540 803 1010 3.13E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Gene3D G3DSA:3.40.50.11180 38 336 2.4E-68 T 13-10-2018 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Pfam PF02559 CarD-like/TRCF domain 501 596 1.1E-32 T 13-10-2018 IPR003711 CarD-like/TRCF domain CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Pfam PF00271 Helicase conserved C-terminal domain 827 930 4.4E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SUPERFAMILY SSF141259 494 569 1.96E-24 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SUPERFAMILY SSF52540 380 488 7.21E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SMART SM00982 1024 1123 9.4E-34 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Gene3D G3DSA:3.30.2060.10 140 225 2.4E-68 T 13-10-2018 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Gene3D G3DSA:2.30.30.840 504 562 1.8E-245 T 13-10-2018 CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 Gene3D G3DSA:3.90.1150.50 1020 1168 8.8E-34 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SMART SM00487 621 811 3.1E-37 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SUPERFAMILY SSF143517 1011 1164 1.19E-33 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SMART SM01058 500 597 5.3E-49 T 13-10-2018 IPR003711 CarD-like/TRCF domain CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SMART SM00490 847 931 6.2E-20 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_4031 a4f59a32afb6a7efacec5e8cf4420822 1168 SUPERFAMILY SSF52540 544 804 8.46E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0056 35a1fd3000f1d75028d280dd9020653b 198 Pfam PF03167 Uracil DNA glycosylase superfamily 29 191 4.6E-36 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0056 35a1fd3000f1d75028d280dd9020653b 198 SMART SM00986 28 189 4.9E-24 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0056 35a1fd3000f1d75028d280dd9020653b 198 SMART SM00987 28 189 4.9E-24 T 13-10-2018 CLM_0056 35a1fd3000f1d75028d280dd9020653b 198 Gene3D G3DSA:3.40.470.10 2 198 6.6E-45 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0056 35a1fd3000f1d75028d280dd9020653b 198 SUPERFAMILY SSF52141 16 196 8.83E-42 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_2987 411218c941e77da91008fb31ae8ee827 216 Pfam PF01813 ATP synthase subunit D 11 205 1.7E-62 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2987 411218c941e77da91008fb31ae8ee827 216 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 4 210 1.9E-53 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2987 411218c941e77da91008fb31ae8ee827 216 Hamap MF_00271 V-type ATP synthase subunit D [atpD]. 2 211 22.33 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 Gene3D G3DSA:3.40.630.40 1 173 2.1E-58 T 13-10-2018 CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 168 1.6E-32 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 SUPERFAMILY SSF53187 1 169 3.77E-44 T 13-10-2018 CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 Pfam PF08239 Bacterial SH3 domain 200 251 2.4E-11 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 SMART SM00287 192 252 1.9E-8 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 SMART SM00646 65 168 1.6E-19 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2036 863ef8eab1518f509bf07d1a1f346f56 252 Gene3D G3DSA:2.30.30.40 191 250 6.0E-16 T 13-10-2018 CLM_0694 9448f6b67bb1b857de693b927c316120 570 SUPERFAMILY SSF52540 330 565 7.01E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0694 9448f6b67bb1b857de693b927c316120 570 SUPERFAMILY SSF90123 8 317 7.85E-65 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0694 9448f6b67bb1b857de693b927c316120 570 Pfam PF00664 ABC transporter transmembrane region 21 289 5.0E-48 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_0694 9448f6b67bb1b857de693b927c316120 570 SMART SM00382 359 543 5.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0694 9448f6b67bb1b857de693b927c316120 570 Pfam PF00005 ABC transporter 351 497 6.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0694 9448f6b67bb1b857de693b927c316120 570 Gene3D G3DSA:3.40.50.300 330 570 3.8E-72 T 13-10-2018 CLM_0694 9448f6b67bb1b857de693b927c316120 570 Gene3D G3DSA:1.20.1560.10 1 321 4.0E-65 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0694 9448f6b67bb1b857de693b927c316120 570 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3597 3f37baeabcf925554f7252063b47b29b 189 Gene3D G3DSA:2.60.120.10 71 179 7.3E-23 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_3597 3f37baeabcf925554f7252063b47b29b 189 SMART SM00530 8 63 1.5E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3597 3f37baeabcf925554f7252063b47b29b 189 SUPERFAMILY SSF47413 3 67 5.35E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_3597 3f37baeabcf925554f7252063b47b29b 189 SUPERFAMILY SSF51182 56 184 7.68E-23 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_3597 3f37baeabcf925554f7252063b47b29b 189 Gene3D G3DSA:1.10.260.40 1 70 8.7E-18 T 13-10-2018 CLM_3597 3f37baeabcf925554f7252063b47b29b 189 Pfam PF01381 Helix-turn-helix 9 63 3.9E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3597 3f37baeabcf925554f7252063b47b29b 189 Pfam PF07883 Cupin domain 122 178 3.4E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_2272 07687dd0b473d186d33ae2cdd260b220 326 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 313 2.3E-84 T 13-10-2018 IPR016040 NAD(P)-binding domain CLM_2272 07687dd0b473d186d33ae2cdd260b220 326 Gene3D G3DSA:3.40.50.720 4 312 1.3E-126 T 13-10-2018 CLM_2272 07687dd0b473d186d33ae2cdd260b220 326 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 325 2.9E-141 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CLM_2272 07687dd0b473d186d33ae2cdd260b220 326 SUPERFAMILY SSF51735 1 325 2.94E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2272 07687dd0b473d186d33ae2cdd260b220 326 Gene3D G3DSA:3.90.25.10 199 321 1.3E-126 T 13-10-2018 CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 Gene3D G3DSA:3.40.640.10 16 257 7.2E-157 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 5 386 2.2E-188 T 13-10-2018 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 SUPERFAMILY SSF53383 4 378 1.86E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 PIRSF PIRSF005572 2 384 2.3E-132 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 Pfam PF00266 Aminotransferase class-V 5 369 2.9E-84 T 13-10-2018 IPR000192 Aminotransferase class V domain CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 56.427 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 Gene3D G3DSA:3.90.1150.10 5 376 7.2E-157 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2875 fa11bd583623d9b44533405bf9ab0796 397 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_1905 459e51816594be0fd454f3e578066730 668 Gene3D G3DSA:3.30.450.20 51 274 2.6E-38 T 13-10-2018 CLM_1905 459e51816594be0fd454f3e578066730 668 SUPERFAMILY SSF103190 117 183 3.53E-14 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_1905 459e51816594be0fd454f3e578066730 668 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 457 619 4.2E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1905 459e51816594be0fd454f3e578066730 668 SMART SM00283 392 667 9.1E-60 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1905 459e51816594be0fd454f3e578066730 668 Pfam PF02743 Cache domain 47 268 5.1E-27 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_1905 459e51816594be0fd454f3e578066730 668 Gene3D G3DSA:1.10.287.950 306 667 7.3E-66 T 13-10-2018 CLM_1905 459e51816594be0fd454f3e578066730 668 Gene3D G3DSA:3.30.450.20 63 174 2.6E-38 T 13-10-2018 CLM_1905 459e51816594be0fd454f3e578066730 668 SUPERFAMILY SSF58104 331 666 5.67E-66 T 13-10-2018 CLM_3975 36cbf196ff5e8ea3edd4788189a08645 229 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 224 1.1E-75 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CLM_3975 36cbf196ff5e8ea3edd4788189a08645 229 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 3 225 40.629 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CLM_3975 36cbf196ff5e8ea3edd4788189a08645 229 SUPERFAMILY SSF53448 4 226 6.07E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3975 36cbf196ff5e8ea3edd4788189a08645 229 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 226 3.0E-63 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CLM_3975 36cbf196ff5e8ea3edd4788189a08645 229 Gene3D G3DSA:3.90.550.10 1 228 7.0E-78 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3975 36cbf196ff5e8ea3edd4788189a08645 229 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 102 109 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Pfam PF00158 Sigma-54 interaction domain 356 522 3.1E-70 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Pfam PF00989 PAS fold 221 268 4.9E-9 T 13-10-2018 IPR013767 PAS fold GO:0006355 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SUPERFAMILY SSF55785 225 315 8.9E-12 T 13-10-2018 IPR035965 PAS domain superfamily CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SUPERFAMILY SSF55785 107 210 6.6E-13 T 13-10-2018 IPR035965 PAS domain superfamily CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Pfam PF00381 PTS HPr component phosphorylation site 4 88 1.1E-10 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SUPERFAMILY SSF46689 610 664 8.51E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Gene3D G3DSA:1.10.10.60 594 666 1.6E-6 T 13-10-2018 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Pfam PF13426 PAS domain 121 211 2.0E-7 T 13-10-2018 IPR000014 PAS domain CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 218 272 1.6E-8 T 13-10-2018 IPR000014 PAS domain CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 111 212 6.6E-10 T 13-10-2018 IPR000014 PAS domain CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Gene3D G3DSA:1.10.8.60 527 593 2.7E-26 T 13-10-2018 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Gene3D G3DSA:3.30.450.20 213 319 7.6E-13 T 13-10-2018 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SUPERFAMILY SSF52540 355 599 1.45E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 380 393 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 569 578 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SUPERFAMILY SSF55594 1 89 1.31E-7 T 13-10-2018 IPR035895 HPr-like superfamily CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Gene3D G3DSA:3.40.50.300 344 526 1.2E-64 T 13-10-2018 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SMART SM00091 220 286 1.3E-6 T 13-10-2018 IPR000014 PAS domain CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SMART SM00091 110 177 7.4E-7 T 13-10-2018 IPR000014 PAS domain CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Gene3D G3DSA:3.30.1340.10 1 92 7.5E-9 T 13-10-2018 IPR035895 HPr-like superfamily CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 SMART SM00382 376 520 1.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 Gene3D G3DSA:3.30.450.20 113 212 1.1E-16 T 13-10-2018 CLM_3906 4c0b75a63cbc71a4579c05753de894e0 669 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 442 457 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3518 6757640c4d22c39efdfee6bff8dc9e75 1154 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 1008 1136 7.8E-13 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CLM_3518 6757640c4d22c39efdfee6bff8dc9e75 1154 SMART SM00047 995 1149 3.0E-38 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CLM_3518 6757640c4d22c39efdfee6bff8dc9e75 1154 Gene3D G3DSA:1.10.530.10 1004 1142 2.9E-8 T 13-10-2018 CLM_3518 6757640c4d22c39efdfee6bff8dc9e75 1154 SUPERFAMILY SSF117281 396 742 2.88E-5 T 13-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 CLM_3518 6757640c4d22c39efdfee6bff8dc9e75 1154 SUPERFAMILY SSF117281 191 428 1.44E-6 T 13-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 613 7.3E-238 T 13-10-2018 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 Gene3D G3DSA:3.30.1360.60 1 77 1.9E-28 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 SUPERFAMILY SSF51261 467 611 7.85E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 Gene3D G3DSA:2.70.70.10 454 612 4.3E-51 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 469 588 2.9E-41 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 468 592 3.0E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 Pfam PF00367 phosphotransferase system, EIIB 9 41 1.7E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 SUPERFAMILY SSF55604 6 80 1.57E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0768 58c0a1d16fc63c4cb38821f4bbb71c98 613 Pfam PF02378 Phosphotransferase system, EIIC 108 385 7.7E-33 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_0263 2866ca712d29eddc87beb17f9919e354 344 Gene3D G3DSA:3.40.630.10 15 341 4.4E-116 T 13-10-2018 CLM_0263 2866ca712d29eddc87beb17f9919e354 344 Gene3D G3DSA:2.40.30.40 77 172 4.4E-116 T 13-10-2018 IPR023367 Peptidase M42, domain 2 CLM_0263 2866ca712d29eddc87beb17f9919e354 344 SUPERFAMILY SSF53187 8 343 3.14E-54 T 13-10-2018 CLM_0263 2866ca712d29eddc87beb17f9919e354 344 Pfam PF05343 M42 glutamyl aminopeptidase 49 337 9.3E-81 T 13-10-2018 IPR008007 Peptidase M42 CLM_0263 2866ca712d29eddc87beb17f9919e354 344 SUPERFAMILY SSF101821 74 187 2.14E-28 T 13-10-2018 CLM_0263 2866ca712d29eddc87beb17f9919e354 344 PIRSF PIRSF001123 5 344 2.6E-39 T 13-10-2018 IPR008007 Peptidase M42 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 Gene3D G3DSA:1.10.8.280 148 259 2.2E-166 T 13-10-2018 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 Gene3D G3DSA:1.20.1580.10 545 583 6.2E-106 T 13-10-2018 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 ProSitePatterns PS00211 ABC transporters family signature. 337 351 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 Pfam PF00005 ABC transporter 468 671 4.3E-15 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 Gene3D G3DSA:1.20.1580.10 94 337 2.2E-166 T 13-10-2018 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 SUPERFAMILY SSF52540 13 419 5.85E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 SUPERFAMILY SSF52540 458 720 6.03E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 ProSitePatterns PS00211 ABC transporters family signature. 644 658 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 Gene3D G3DSA:3.40.50.300 9 438 2.2E-166 T 13-10-2018 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 Gene3D G3DSA:3.40.50.300 463 747 6.2E-106 T 13-10-2018 CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 SMART SM00382 477 717 0.011 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3187 9ae52b91180319776c1c07ca4afdb874 752 SMART SM00382 26 414 3.1 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3970 cdd499fe4d5caa3aa3948c6687586d39 250 Gene3D G3DSA:3.30.1360.170 1 215 7.1E-70 T 13-10-2018 CLM_3970 cdd499fe4d5caa3aa3948c6687586d39 250 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 1 223 31.274 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 CLM_3970 cdd499fe4d5caa3aa3948c6687586d39 250 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 2 214 3.0E-60 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 CLM_3970 cdd499fe4d5caa3aa3948c6687586d39 250 Pfam PF02511 Thymidylate synthase complementing protein 4 209 7.4E-72 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 CLM_3970 cdd499fe4d5caa3aa3948c6687586d39 250 SUPERFAMILY SSF69796 1 224 4.97E-67 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 SUPERFAMILY SSF158472 184 231 3.53E-8 T 13-10-2018 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 SMART SM00387 368 479 7.1E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 477 5.7E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 SUPERFAMILY SSF55874 314 476 1.44E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 322 4.5E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 Pfam PF00672 HAMP domain 185 231 2.9E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 SUPERFAMILY SSF47384 243 323 1.02E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 SMART SM00388 257 323 7.3E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 SMART SM00304 183 235 3.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 Gene3D G3DSA:1.10.287.130 250 324 1.0E-15 T 13-10-2018 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 Gene3D G3DSA:3.30.565.10 328 478 2.6E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 Gene3D G3DSA:1.20.1480.50 150 241 1.5E-10 T 13-10-2018 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 1.1E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 1.1E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 1.1E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2185 fc16edfd0d0b172cc74177d8e983e110 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 1.1E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Gene3D G3DSA:1.10.287.130 238 311 1.7E-21 T 13-10-2018 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 306 6.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Gene3D G3DSA:3.30.450.20 34 167 3.9E-5 T 13-10-2018 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SUPERFAMILY SSF47384 226 310 9.22E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Pfam PF00672 HAMP domain 191 238 5.8E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SUPERFAMILY SSF103190 73 156 4.71E-5 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_0421 a6a775509488f4a94f213cd22bff708e 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 9.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 9.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 9.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SMART SM00388 243 309 1.8E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SUPERFAMILY SSF158472 191 238 5.89E-9 T 13-10-2018 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Gene3D G3DSA:3.30.565.10 312 463 1.8E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SMART SM00304 190 242 2.0E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Gene3D G3DSA:1.10.8.500 189 237 3.5E-8 T 13-10-2018 CLM_0421 a6a775509488f4a94f213cd22bff708e 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 461 1.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SUPERFAMILY SSF55874 299 461 2.23E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0421 a6a775509488f4a94f213cd22bff708e 464 SMART SM00387 355 463 2.1E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2096 e9efed2a24fcea9e818ef048d263bb06 281 Hamap MF_00361 NAD kinase [nadK]. 2 273 31.667 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CLM_2096 e9efed2a24fcea9e818ef048d263bb06 281 Pfam PF01513 ATP-NAD kinase 23 257 3.6E-58 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CLM_2096 e9efed2a24fcea9e818ef048d263bb06 281 SUPERFAMILY SSF111331 17 276 6.93E-80 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLM_2096 e9efed2a24fcea9e818ef048d263bb06 281 Gene3D G3DSA:3.40.50.10330 25 273 7.1E-83 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 CLM_2096 e9efed2a24fcea9e818ef048d263bb06 281 Gene3D G3DSA:2.60.200.30 116 250 7.1E-83 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CLM_1493 a376f80dc52d09537953b69085d94b54 455 SUPERFAMILY SSF51735 228 359 3.23E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1493 a376f80dc52d09537953b69085d94b54 455 Gene3D G3DSA:3.30.70.1450 137 227 4.1E-20 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1493 a376f80dc52d09537953b69085d94b54 455 Pfam PF02254 TrkA-N domain 230 346 3.6E-21 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CLM_1493 a376f80dc52d09537953b69085d94b54 455 Pfam PF02254 TrkA-N domain 3 122 1.6E-30 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CLM_1493 a376f80dc52d09537953b69085d94b54 455 Gene3D G3DSA:3.40.50.720 229 360 6.0E-32 T 13-10-2018 CLM_1493 a376f80dc52d09537953b69085d94b54 455 SUPERFAMILY SSF51735 1 149 3.68E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1493 a376f80dc52d09537953b69085d94b54 455 Pfam PF02080 TrkA-C domain 153 221 3.0E-12 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_1493 a376f80dc52d09537953b69085d94b54 455 Pfam PF02080 TrkA-C domain 383 449 2.2E-11 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_1493 a376f80dc52d09537953b69085d94b54 455 Gene3D G3DSA:3.30.70.1450 370 451 3.4E-17 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1493 a376f80dc52d09537953b69085d94b54 455 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.6E-17 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CLM_1493 a376f80dc52d09537953b69085d94b54 455 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.6E-17 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CLM_1493 a376f80dc52d09537953b69085d94b54 455 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.6E-17 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CLM_1493 a376f80dc52d09537953b69085d94b54 455 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.6E-17 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CLM_1493 a376f80dc52d09537953b69085d94b54 455 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.6E-17 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CLM_1493 a376f80dc52d09537953b69085d94b54 455 Gene3D G3DSA:3.40.50.720 2 136 3.4E-47 T 13-10-2018 CLM_1493 a376f80dc52d09537953b69085d94b54 455 SUPERFAMILY SSF116726 375 449 2.22E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1493 a376f80dc52d09537953b69085d94b54 455 SUPERFAMILY SSF116726 134 221 4.71E-14 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1409 c9666caabe7978909aceb2075ab1cb5a 248 Pfam PF17115 N-terminal domain of toast_rack, DUF2154 48 139 1.4E-34 T 13-10-2018 IPR031346 Uncharacterised protein DUF2154, N-terminal CLM_1409 c9666caabe7978909aceb2075ab1cb5a 248 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 140 245 3.0E-9 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 SUPERFAMILY SSF52540 8 141 4.2E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 SUPERFAMILY SSF57716 142 190 3.99E-16 T 13-10-2018 CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 Pfam PF00265 Thymidine kinase 8 187 8.1E-60 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 Gene3D G3DSA:3.40.50.300 1 141 1.9E-59 T 13-10-2018 CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 Hamap MF_00124 Thymidine kinase [tdk]. 7 190 37.8 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 PIRSF PIRSF035805 5 191 6.0E-69 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 Gene3D G3DSA:3.30.60.20 142 191 1.7E-24 T 13-10-2018 CLM_0179 faa029cd4cc2b75a7262193e2873ce63 191 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 174 187 - T 13-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 SUPERFAMILY SSF52540 326 568 2.19E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 Pfam PF00005 ABC transporter 349 498 1.4E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 Gene3D G3DSA:3.40.50.300 319 570 5.6E-80 T 13-10-2018 CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 Gene3D G3DSA:1.20.1560.10 2 318 1.9E-56 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 SUPERFAMILY SSF90123 5 316 1.57E-54 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 SMART SM00382 358 544 5.7E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3778 929135fdcdf498e511ffa6dafea982d5 577 Pfam PF00664 ABC transporter transmembrane region 23 287 9.0E-29 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 Pfam PF02867 Ribonucleotide reductase, barrel domain 236 747 1.6E-149 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 160 750 7.9E-179 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 PRINTS PR01183 Ribonucleotide reductase large chain signature 311 330 2.6E-38 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 PRINTS PR01183 Ribonucleotide reductase large chain signature 505 528 2.6E-38 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 PRINTS PR01183 Ribonucleotide reductase large chain signature 571 594 2.6E-38 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 PRINTS PR01183 Ribonucleotide reductase large chain signature 632 659 2.6E-38 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 PRINTS PR01183 Ribonucleotide reductase large chain signature 543 565 2.6E-38 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 PRINTS PR01183 Ribonucleotide reductase large chain signature 451 462 2.6E-38 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 SUPERFAMILY SSF48168 8 234 1.7E-62 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 SUPERFAMILY SSF51998 235 762 5.19E-164 T 13-10-2018 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 157 231 1.9E-20 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 Gene3D G3DSA:3.20.70.20 88 757 3.7E-206 T 13-10-2018 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 621 643 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3178 34e86af4ea5b6c60f97ee9aa93b31282 763 Pfam PF03477 ATP cone domain 3 102 8.1E-21 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CLM_0365 686a07000bdcc32c5e22815148b9858b 240 Gene3D G3DSA:3.90.470.20 21 228 7.4E-75 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_0365 686a07000bdcc32c5e22815148b9858b 240 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 111 214 1.2E-16 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_0365 686a07000bdcc32c5e22815148b9858b 240 SUPERFAMILY SSF56214 29 104 1.31E-20 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_0365 686a07000bdcc32c5e22815148b9858b 240 SUPERFAMILY SSF56214 111 234 3.66E-28 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_0365 686a07000bdcc32c5e22815148b9858b 240 Gene3D G3DSA:3.90.470.20 112 215 7.4E-75 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_0365 686a07000bdcc32c5e22815148b9858b 240 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 109 223 8.3E-14 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 SUPERFAMILY SSF55031 161 283 6.73E-15 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 SUPERFAMILY SSF53187 7 397 6.79E-59 T 13-10-2018 CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 Pfam PF01546 Peptidase family M20/M25/M40 77 393 1.8E-27 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 Gene3D G3DSA:3.40.630.10 24 387 1.5E-71 T 13-10-2018 CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 TIGRFAM TIGR03526 selenium_YgeY: putative selenium metabolism hydrolase 7 400 5.1E-228 T 13-10-2018 IPR017706 Peptidase M20/DapE, YgeY CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 Gene3D G3DSA:3.30.70.360 185 299 1.5E-71 T 13-10-2018 CLM_3278 9c99e1a165c2aa901fdfa5683a26edfe 405 Pfam PF07687 Peptidase dimerisation domain 182 286 6.0E-19 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_0817 ccef711e7214f93cc9d86b78617e0a20 446 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 2 446 48.465 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 CLM_0817 ccef711e7214f93cc9d86b78617e0a20 446 SUPERFAMILY SSF53383 3 446 1.01E-111 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0817 ccef711e7214f93cc9d86b78617e0a20 446 Gene3D G3DSA:3.40.640.10 83 348 5.2E-168 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0817 ccef711e7214f93cc9d86b78617e0a20 446 Pfam PF02347 Glycine cleavage system P-protein 4 442 6.2E-142 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CLM_0817 ccef711e7214f93cc9d86b78617e0a20 446 Gene3D G3DSA:3.90.1150.10 72 442 5.2E-168 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0817 ccef711e7214f93cc9d86b78617e0a20 446 PIRSF PIRSF006815 2 446 9.7E-195 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 Gene3D G3DSA:2.40.30.10 132 209 2.5E-14 T 13-10-2018 CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 5 204 5.0E-87 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 SUPERFAMILY SSF50447 2 208 1.06E-81 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 Pfam PF00297 Ribosomal protein L3 96 180 1.8E-17 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 Gene3D G3DSA:2.40.50.620 32 97 2.0E-18 T 13-10-2018 CLM_3948 091cc87acce4011ba8b4cc4de65068a3 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 207 38.588 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Gene3D G3DSA:3.40.120.10 32 188 1.6E-45 T 13-10-2018 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 324 451 5.0E-25 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 SUPERFAMILY SSF53738 29 236 4.32E-42 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 SUPERFAMILY SSF53738 212 315 4.32E-17 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Gene3D G3DSA:3.30.310.50 484 572 1.0E-6 T 13-10-2018 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 222 312 2.0E-19 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Gene3D G3DSA:3.40.120.10 324 452 2.4E-40 T 13-10-2018 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 SUPERFAMILY SSF55957 444 573 8.24E-14 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Gene3D G3DSA:3.40.120.10 205 323 3.0E-21 T 13-10-2018 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 501 558 1.0E-8 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 SUPERFAMILY SSF53738 304 455 2.28E-33 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3521 a3e94eb7ad65d4242273871086043c9f 575 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 42 179 1.1E-38 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 Gene3D G3DSA:3.40.1010.10 1 117 1.3E-12 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 205 3.5E-28 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 TIGRFAM TIGR00444 mazG: MazG family protein 235 479 1.5E-93 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 SUPERFAMILY SSF101386 227 328 8.34E-25 T 13-10-2018 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 SUPERFAMILY SSF101386 360 453 2.06E-25 T 13-10-2018 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 SUPERFAMILY SSF53790 1 253 3.34E-33 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 Gene3D G3DSA:1.10.287.1080 226 348 9.4E-42 T 13-10-2018 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 387 448 2.0E-8 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 251 324 5.2E-29 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 Gene3D G3DSA:1.10.287.1080 355 481 5.6E-43 T 13-10-2018 CLM_4027 4ae2314fe2871703725296b7f2f350e0 481 PIRSF PIRSF002845 1 481 8.9E-224 T 13-10-2018 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted CLM_0145 9f48c2699eb76cd5a62b7a04e4a24276 355 SUPERFAMILY SSF53448 2 278 4.9E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0145 9f48c2699eb76cd5a62b7a04e4a24276 355 Pfam PF00483 Nucleotidyl transferase 4 279 7.0E-47 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CLM_0145 9f48c2699eb76cd5a62b7a04e4a24276 355 Gene3D G3DSA:3.90.550.10 2 348 1.3E-110 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0145 9f48c2699eb76cd5a62b7a04e4a24276 355 SUPERFAMILY SSF159283 285 346 4.58E-14 T 13-10-2018 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 135 152 6.1E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 82 93 6.1E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 162 175 6.1E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 299 387 3.1E-9 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 Gene3D G3DSA:3.40.710.10 23 323 1.7E-93 T 13-10-2018 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 SUPERFAMILY SSF56601 8 299 9.5E-80 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 SMART SM00936 299 388 1.2E-11 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CLM_2020 5c8a68f6cb20df6054fdc963f6fbdb48 407 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 51 279 2.2E-76 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 SUPERFAMILY SSF55073 261 418 1.26E-46 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 SMART SM00267 245 417 1.1E-54 T 13-10-2018 IPR000160 GGDEF domain CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 SMART SM00091 138 204 2.3E-6 T 13-10-2018 IPR000014 PAS domain CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 Gene3D G3DSA:3.30.450.20 133 247 1.9E-17 T 13-10-2018 CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 254 416 8.9E-46 T 13-10-2018 IPR000160 GGDEF domain CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 SUPERFAMILY SSF55785 123 243 5.23E-18 T 13-10-2018 IPR035965 PAS domain superfamily CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 Pfam PF13426 PAS domain 38 124 0.09 T 13-10-2018 IPR000014 PAS domain CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 Pfam PF13426 PAS domain 149 244 1.6E-9 T 13-10-2018 IPR000014 PAS domain CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 Pfam PF00990 Diguanylate cyclase, GGDEF domain 256 413 3.9E-50 T 13-10-2018 IPR000160 GGDEF domain CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 Gene3D G3DSA:3.30.70.270 250 419 3.1E-57 T 13-10-2018 CLM_1368 166c78fe74405b9104f65bb7dc4a501c 419 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 138 248 8.1E-18 T 13-10-2018 IPR000014 PAS domain CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 Gene3D G3DSA:3.40.50.300 136 275 3.1E-18 T 13-10-2018 CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 Gene3D G3DSA:3.40.50.300 2 64 5.8E-8 T 13-10-2018 CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 250 3.0E-16 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 SUPERFAMILY SSF52540 3 273 4.25E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 Pfam PF00037 4Fe-4S binding domain 58 80 5.4E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 Pfam PF00037 4Fe-4S binding domain 92 110 2.9E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 SUPERFAMILY SSF54862 47 119 6.02E-17 T 13-10-2018 CLM_2428 f422f84485a669d9bcdf4211c22d1e03 276 Gene3D G3DSA:3.30.70.20 65 125 1.1E-9 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.10 2095 2451 2.8E-134 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF47336 2001 2073 8.51E-18 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0373 617cb406c2c657698d3c78c616328343 3582 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2563 2964 3.1E-134 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 488 890 4.2E-112 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1528 1924 3.5E-134 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF13193 AMP-binding enzyme C-terminal domain 874 947 2.2E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF13193 AMP-binding enzyme C-terminal domain 2948 3021 1.8E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF13193 AMP-binding enzyme C-terminal domain 1909 1982 4.2E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.40.50.12780 2534 2933 5.3E-136 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.40.50.12780 459 859 9.9E-111 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.30 1225 1471 7.8E-136 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.40.50.12780 1492 1895 1.2E-136 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.10 1060 1416 7.8E-136 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 18 192 2.11E-35 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00668 Condensation domain 2091 2522 3.1E-121 T 13-10-2018 IPR001242 Condensation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00668 Condensation domain 1056 1487 3.9E-125 T 13-10-2018 IPR001242 Condensation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00668 Condensation domain 3130 3564 4.7E-125 T 13-10-2018 IPR001242 Condensation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00668 Condensation domain 13 446 1.0E-82 T 13-10-2018 IPR001242 Condensation domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF56801 1464 2021 1.05E-151 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.10 18 378 3.4E-92 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 2096 2256 7.0E-37 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.30 194 442 3.4E-92 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 1061 1221 1.11E-36 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 2262 2528 2.45E-53 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF47336 965 1039 2.09E-19 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0373 617cb406c2c657698d3c78c616328343 3582 ProSitePatterns PS00455 Putative AMP-binding domain signature. 607 618 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF56801 2501 3061 3.27E-163 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.30 2260 2506 2.8E-134 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.10 3135 3494 2.0E-137 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 1228 1493 1.02E-55 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF56801 424 986 3.92E-148 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1646 1657 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 3136 3297 7.34E-37 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00550 Phosphopantetheine attachment site 3050 3113 5.1E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00550 Phosphopantetheine attachment site 975 1038 1.3E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00550 Phosphopantetheine attachment site 2011 2073 2.5E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF47336 3040 3114 6.15E-18 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.300.30 1896 1996 2.2E-31 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.300.30 861 961 9.4E-35 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 197 453 6.78E-34 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2681 2692 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.559.30 3301 3550 2.0E-137 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00501 AMP-binding enzyme 2542 2940 2.2E-104 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00501 AMP-binding enzyme 1507 1901 4.0E-101 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Pfam PF00501 AMP-binding enzyme 467 866 4.2E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0373 617cb406c2c657698d3c78c616328343 3582 SUPERFAMILY SSF52777 3307 3552 7.78E-52 T 13-10-2018 CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:1.10.1200.10 1997 2080 3.4E-22 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:1.10.1200.10 962 1044 1.0E-24 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:1.10.1200.10 3038 3121 5.0E-24 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0373 617cb406c2c657698d3c78c616328343 3582 Gene3D G3DSA:3.30.300.30 2934 3037 1.1E-31 T 13-10-2018 CLM_4078 5ba6f985df37c331816367dd4350b8c9 414 SUPERFAMILY SSF53756 6 343 2.3E-52 T 13-10-2018 CLM_4078 5ba6f985df37c331816367dd4350b8c9 414 Gene3D G3DSA:3.40.50.2000 207 345 8.7E-47 T 13-10-2018 CLM_4078 5ba6f985df37c331816367dd4350b8c9 414 Pfam PF13439 Glycosyltransferase Family 4 16 210 3.8E-9 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_4078 5ba6f985df37c331816367dd4350b8c9 414 Gene3D G3DSA:3.40.50.2000 80 206 8.7E-47 T 13-10-2018 CLM_4078 5ba6f985df37c331816367dd4350b8c9 414 Pfam PF00534 Glycosyl transferases group 1 214 344 4.0E-24 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_1532 61291ad0727f60d9e37c3fe37f2b688b 266 SUPERFAMILY SSF161098 61 250 1.18E-24 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1532 61291ad0727f60d9e37c3fe37f2b688b 266 Gene3D G3DSA:1.10.3720.10 57 264 6.6E-20 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1532 61291ad0727f60d9e37c3fe37f2b688b 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 261 6.4E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 Pfam PF01476 LysM domain 75 118 1.9E-12 T 13-10-2018 IPR018392 LysM domain CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 SUPERFAMILY SSF54106 73 118 3.14E-10 T 13-10-2018 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 Pfam PF01471 Putative peptidoglycan binding domain 9 65 7.4E-19 T 13-10-2018 IPR002477 Peptidoglycan binding-like CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 154 166 7.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 173 187 7.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 329 342 7.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 271 279 7.3E-5 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 SUPERFAMILY SSF53187 123 418 2.9E-57 T 13-10-2018 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 SMART SM00631 129 412 4.0E-22 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 Pfam PF00246 Zinc carboxypeptidase 136 415 1.2E-38 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 SUPERFAMILY SSF47090 2 66 5.23E-22 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 Gene3D G3DSA:3.40.630.10 126 421 1.5E-59 T 13-10-2018 CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 Gene3D G3DSA:3.10.350.10 73 118 1.3E-18 T 13-10-2018 IPR036779 LysM domain superfamily CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 SMART SM00257 74 118 1.8E-15 T 13-10-2018 IPR018392 LysM domain CLM_1547 f93cb53c140c2040e8579daaddbc7ff4 423 Gene3D G3DSA:1.10.101.10 1 72 2.2E-26 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CLM_1980 220c45452d251c2e0c082dfc4661f06e 477 SUPERFAMILY SSF116726 393 473 6.15E-12 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1980 220c45452d251c2e0c082dfc4661f06e 477 Gene3D G3DSA:1.20.1530.20 5 397 1.4E-64 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_1980 220c45452d251c2e0c082dfc4661f06e 477 Pfam PF02080 TrkA-C domain 407 473 1.5E-13 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_1980 220c45452d251c2e0c082dfc4661f06e 477 Pfam PF00999 Sodium/hydrogen exchanger family 10 385 8.5E-58 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CLM_1980 220c45452d251c2e0c082dfc4661f06e 477 Gene3D G3DSA:3.30.70.1450 398 474 9.1E-14 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 SUPERFAMILY SSF52738 170 352 1.14E-60 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 354 36.927 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 SMART SM00448 4 128 1.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 Pfam PF01339 CheB methylesterase 174 349 4.6E-59 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 Pfam PF00072 Response regulator receiver domain 6 112 4.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 Gene3D G3DSA:3.40.50.2300 2 142 2.7E-33 T 13-10-2018 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 PIRSF PIRSF000876 1 354 2.2E-125 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 SUPERFAMILY SSF52172 2 111 3.7E-29 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3116 2871765d0dfbd035ad722cf804f4a007 354 Gene3D G3DSA:3.40.50.180 164 354 2.2E-66 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 Gene3D G3DSA:3.40.50.12740 5 216 2.8E-64 T 13-10-2018 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 SUPERFAMILY SSF46894 149 216 1.16E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 Pfam PF00072 Response regulator receiver domain 6 114 8.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 SUPERFAMILY SSF52172 3 133 3.27E-32 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 SMART SM00421 153 210 5.6E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 SMART SM00448 4 117 7.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.9E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.9E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.9E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1553 da0ef6e389de24a517a46c396bdf350c 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 6.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_2334 6f410ff62da565664cf3446826134861 437 PIRSF PIRSF006603 1 435 2.0E-63 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2334 6f410ff62da565664cf3446826134861 437 Pfam PF01554 MatE 15 174 3.6E-20 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2334 6f410ff62da565664cf3446826134861 437 Pfam PF01554 MatE 236 394 1.1E-17 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2334 6f410ff62da565664cf3446826134861 437 TIGRFAM TIGR00797 matE: MATE efflux family protein 15 408 2.1E-47 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0418 f414ac198889d6aa188d882511da411d 175 Pfam PF01569 PAP2 superfamily 62 173 1.4E-27 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLM_0418 f414ac198889d6aa188d882511da411d 175 SUPERFAMILY SSF48317 4 172 1.31E-42 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLM_0418 f414ac198889d6aa188d882511da411d 175 Gene3D G3DSA:1.20.144.10 6 90 1.8E-8 T 13-10-2018 CLM_0418 f414ac198889d6aa188d882511da411d 175 Gene3D G3DSA:1.20.144.10 91 174 6.3E-22 T 13-10-2018 CLM_0418 f414ac198889d6aa188d882511da411d 175 SMART SM00014 57 167 3.0E-25 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 SUPERFAMILY SSF55136 128 290 1.02E-31 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 SMART SM00871 128 288 9.8E-36 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 Pfam PF06445 GyrI-like small molecule binding domain 128 287 5.3E-28 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 SUPERFAMILY SSF46689 57 108 9.86E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 Gene3D G3DSA:1.10.10.60 58 117 1.5E-13 T 13-10-2018 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 1.5E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 1.5E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 Gene3D G3DSA:3.20.80.10 128 290 3.7E-40 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 Pfam PF12833 Helix-turn-helix domain 28 104 4.3E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 SMART SM00342 21 104 3.4E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 Gene3D G3DSA:1.10.10.60 2 57 6.4E-15 T 13-10-2018 CLM_0874 f5deaf6a45fbf52102f9f13eef94380d 290 SUPERFAMILY SSF46689 5 55 3.85E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1816 5d363deb25d0f6a473c1ba0fbdfd4f10 231 Pfam PF04143 Sulphur transport 66 225 9.5E-31 T 13-10-2018 IPR007272 Sulphur transport domain CLM_0613 7dd1494efbd97ce9d2cace25343a295c 279 Pfam PF00753 Metallo-beta-lactamase superfamily 24 85 2.9E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0613 7dd1494efbd97ce9d2cace25343a295c 279 SUPERFAMILY SSF56281 11 259 7.34E-28 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0613 7dd1494efbd97ce9d2cace25343a295c 279 Gene3D G3DSA:3.60.15.10 1 279 3.7E-76 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 Gene3D G3DSA:3.30.420.40 33 273 3.1E-103 T 13-10-2018 CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 SUPERFAMILY SSF53067 144 273 7.01E-27 T 13-10-2018 CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 Gene3D G3DSA:3.30.420.40 146 259 3.1E-103 T 13-10-2018 CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 Pfam PF11104 Type IV pilus assembly protein PilM; 142 257 1.7E-11 T 13-10-2018 IPR005883 Type IV pilus assembly protein PilM CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 147 160 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 SUPERFAMILY SSF53067 34 136 2.07E-12 T 13-10-2018 CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 TIGRFAM TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein 36 274 1.7E-98 T 13-10-2018 IPR013366 Ethanolamine utilisation EutJ CLM_2321 f9c82caa7ca41dd1282e66f638a7a268 281 SMART SM00842 34 140 0.0086 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 5 404 8.5E-138 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 Gene3D G3DSA:3.50.50.60 6 400 5.9E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 SUPERFAMILY SSF160996 189 352 4.97E-43 T 13-10-2018 CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 Pfam PF03486 HI0933-like protein 4 404 1.5E-128 T 13-10-2018 CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 SUPERFAMILY SSF51905 4 406 1.41E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 Gene3D G3DSA:1.10.8.260 269 334 5.9E-127 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily CLM_4118 b8135a25e479e5ac26e68ed5ac83b4e1 409 Gene3D G3DSA:2.40.30.10 188 351 5.9E-127 T 13-10-2018 CLM_1280 efd89b5fcb1340dc2267bd1176912be3 259 SUPERFAMILY SSF52151 14 208 4.19E-7 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_1280 efd89b5fcb1340dc2267bd1176912be3 259 Gene3D G3DSA:3.40.1090.10 11 92 5.3E-6 T 13-10-2018 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF07532 Bacterial Ig-like domain (group 4) 841 888 1.9E-4 T 13-10-2018 IPR011081 Bacterial Ig-related CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Gene3D G3DSA:3.40.50.12090 58 154 7.1E-11 T 13-10-2018 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF13306 Leucine rich repeats (6 copies) 605 727 1.7E-30 T 13-10-2018 IPR026906 Leucine rich repeat 5 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF13306 Leucine rich repeats (6 copies) 998 1107 1.5E-23 T 13-10-2018 IPR026906 Leucine rich repeat 5 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF13306 Leucine rich repeats (6 copies) 1472 1598 3.5E-21 T 13-10-2018 IPR026906 Leucine rich repeat 5 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF04122 Putative cell wall binding repeat 2 37 123 1.5E-17 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF04122 Putative cell wall binding repeat 2 239 329 4.2E-14 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Pfam PF04122 Putative cell wall binding repeat 2 137 227 6.8E-12 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 SUPERFAMILY SSF52058 1018 1203 8.75E-5 T 13-10-2018 CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Gene3D G3DSA:3.80.10.10 1440 1622 1.1E-24 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Gene3D G3DSA:3.80.10.10 556 838 7.3E-46 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Gene3D G3DSA:3.80.10.10 1122 1339 1.9E-22 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_0449 c300022ddce7f17690410cbe0c191d92 1634 Gene3D G3DSA:3.80.10.10 913 1121 4.2E-29 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 SUPERFAMILY SSF47413 2 70 1.35E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 Gene3D G3DSA:1.10.260.40 1 73 6.6E-20 T 13-10-2018 CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 Pfam PF07883 Cupin domain 126 175 1.0E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 Gene3D G3DSA:2.60.120.10 90 183 3.0E-24 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 SMART SM00530 10 65 1.9E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 Pfam PF01381 Helix-turn-helix 11 63 5.1E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0732 a04fbda51fbc6a44de54b616a9961dfe 183 SUPERFAMILY SSF51182 58 182 7.6E-21 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Gene3D G3DSA:1.10.8.10 149 195 1.1E-12 T 13-10-2018 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 SUPERFAMILY SSF50249 2 63 7.42E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Gene3D G3DSA:1.10.150.20 67 133 4.9E-23 T 13-10-2018 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Pfam PF07499 RuvA, C-terminal domain 156 196 1.5E-14 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 SUPERFAMILY SSF47781 65 132 1.0E-18 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Pfam PF01330 RuvA N terminal domain 2 62 1.1E-15 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Pfam PF14520 Helix-hairpin-helix domain 72 130 7.7E-17 T 13-10-2018 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 SUPERFAMILY SSF46929 153 196 1.57E-9 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Gene3D G3DSA:2.40.50.140 1 65 2.8E-17 T 13-10-2018 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 196 29.651 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CLM_3476 775b787fda9403fb7b0ba36abfc6e8a8 197 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 3 196 5.1E-43 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 Pfam PF01938 TRAM domain 8 62 1.9E-6 T 13-10-2018 IPR002792 TRAM domain CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 Gene3D G3DSA:3.40.1350.30 134 290 1.9E-125 T 13-10-2018 CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 Gene3D G3DSA:3.40.50.150 85 453 1.9E-125 T 13-10-2018 CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 22 451 2.5E-156 T 13-10-2018 CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 SUPERFAMILY SSF53335 72 457 5.19E-86 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 441 451 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 SUPERFAMILY SSF50249 2 63 1.43E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 Gene3D G3DSA:2.40.50.140 1 63 1.0E-18 T 13-10-2018 CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 278 458 2.9E-19 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CLM_3829 47d1d3c1366d0e495432ed833e253a0d 461 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 389 420 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 SUPERFAMILY SSF53218 1 204 1.01E-41 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 409 173.47 T 13-10-2018 IPR008135 Competence-induced protein CinA CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 PIRSF PIRSF006728 1 409 4.4E-160 T 13-10-2018 IPR008135 Competence-induced protein CinA CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 Gene3D G3DSA:3.40.980.10 1 171 2.1E-57 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 262 408 8.4E-45 T 13-10-2018 IPR008136 CinA, C-terminal CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 1 165 3.7E-31 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 Pfam PF00994 Probable molybdopterin binding domain 5 170 3.4E-37 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 SUPERFAMILY SSF142433 250 408 1.96E-54 T 13-10-2018 IPR036653 CinA-like, C-terminal CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 Gene3D G3DSA:3.90.950.20 241 408 4.2E-55 T 13-10-2018 IPR036653 CinA-like, C-terminal CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 408 1.0E-129 T 13-10-2018 IPR008135 Competence-induced protein CinA CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 SMART SM00852 4 170 1.2E-42 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_0261 8bd214dcfe3a321a002bca7c36b10bd3 409 Pfam PF02464 Competence-damaged protein 257 408 6.8E-56 T 13-10-2018 IPR008136 CinA, C-terminal CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 SUPERFAMILY SSF51735 6 246 1.89E-86 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 244 2.0E-67 T 13-10-2018 CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.3E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.3E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.3E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 Gene3D G3DSA:3.40.50.720 5 247 6.3E-86 T 13-10-2018 CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 6.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 6.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 6.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 6.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_0594 39863eb8d61389b22f3825c0341c7d65 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 6.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_2406 83cd4bd672abbefcbf0f7f3284713c2a 197 Pfam PF00583 Acetyltransferase (GNAT) family 46 177 4.3E-9 T 13-10-2018 IPR000182 GNAT domain CLM_2406 83cd4bd672abbefcbf0f7f3284713c2a 197 SUPERFAMILY SSF55729 1 184 6.15E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_2406 83cd4bd672abbefcbf0f7f3284713c2a 197 Gene3D G3DSA:3.40.630.30 5 197 3.9E-34 T 13-10-2018 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 SUPERFAMILY SSF48208 2366 2881 6.05E-95 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 SUPERFAMILY SSF74650 2094 2357 2.67E-70 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2387 2813 1.7E-139 T 13-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 SMART SM01068 2094 2159 1.8E-33 T 13-10-2018 IPR009342 Putative carbohydrate binding domain CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 SMART SM01068 1592 1651 7.3E-16 T 13-10-2018 IPR009342 Putative carbohydrate binding domain CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Gene3D G3DSA:1.50.10.140 1305 1579 1.5E-7 T 13-10-2018 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Gene3D G3DSA:1.50.10.10 2401 2813 1.4E-196 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Gene3D G3DSA:2.70.98.40 1597 1895 3.8E-78 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Gene3D G3DSA:2.70.98.40 2096 2392 1.7E-82 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Gene3D G3DSA:1.50.10.140 991 1128 7.8E-17 T 13-10-2018 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 SUPERFAMILY SSF74650 1602 1864 1.85E-69 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Gene3D G3DSA:2.60.420.10 2396 2870 1.4E-196 T 13-10-2018 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Pfam PF10091 Putative glucoamylase 1350 1564 3.3E-17 T 13-10-2018 IPR019282 Domain of unknown function DUF2329 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Pfam PF06165 Glycosyltransferase family 36 2117 2356 4.2E-78 T 13-10-2018 IPR010383 Glycosyl hydrolase 94 CLM_3779 23fb3965c209db5bbac3d248ff08a948 2882 Pfam PF06165 Glycosyltransferase family 36 1614 1860 2.3E-70 T 13-10-2018 IPR010383 Glycosyl hydrolase 94 CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 Gene3D G3DSA:3.40.50.2020 76 271 3.2E-50 T 13-10-2018 CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 15 73 7.0E-21 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 Gene3D G3DSA:1.10.10.10 2 74 9.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 Pfam PF00156 Phosphoribosyl transferase domain 112 261 4.7E-21 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 TIGRFAM TIGR01743 purR_Bsub: pur operon repressor PurR 4 263 5.0E-109 T 13-10-2018 IPR010078 Pur operon repressor GO:0003677|GO:0045892|GO:0045982 CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 Pfam PF09182 Bacterial purine repressor, N-terminal 6 73 3.6E-29 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 SUPERFAMILY SSF53271 93 254 2.98E-35 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_4039 a0f2a9111f3545291c98dbdff7b60072 271 SUPERFAMILY SSF46785 3 73 2.04E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 Gene3D G3DSA:3.40.47.10 126 389 9.0E-167 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 Pfam PF00108 Thiolase, N-terminal domain 4 262 1.0E-109 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 SUPERFAMILY SSF53901 270 391 1.13E-45 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 2.4E-156 T 13-10-2018 IPR002155 Thiolase GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 3.5E-53 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 PIRSF PIRSF000429 1 392 1.1E-141 T 13-10-2018 IPR002155 Thiolase GO:0016747 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 Gene3D G3DSA:3.40.47.10 6 275 9.0E-167 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_3612 4c142533b8a3ad30b2fa0f1e9f905f54 392 SUPERFAMILY SSF53901 3 269 1.48E-94 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_1510 c7c64f5833370f2f77a9ded5e21a1751 226 SUPERFAMILY SSF90123 8 102 2.09E-10 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1510 c7c64f5833370f2f77a9ded5e21a1751 226 Pfam PF00005 ABC transporter 132 221 1.5E-16 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1510 c7c64f5833370f2f77a9ded5e21a1751 226 SUPERFAMILY SSF52540 110 226 2.86E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1510 c7c64f5833370f2f77a9ded5e21a1751 226 Gene3D G3DSA:3.40.50.300 103 226 3.0E-31 T 13-10-2018 CLM_1510 c7c64f5833370f2f77a9ded5e21a1751 226 Gene3D G3DSA:1.20.1560.10 2 102 2.3E-9 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0508 17aa10ab5af829d85c5f2aba4765f9c4 216 SUPERFAMILY SSF48452 81 212 2.09E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0508 17aa10ab5af829d85c5f2aba4765f9c4 216 Gene3D G3DSA:1.25.40.10 5 214 1.2E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0508 17aa10ab5af829d85c5f2aba4765f9c4 216 Pfam PF00515 Tetratricopeptide repeat 127 154 7.2E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CLM_0508 17aa10ab5af829d85c5f2aba4765f9c4 216 SMART SM00028 168 202 36.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0508 17aa10ab5af829d85c5f2aba4765f9c4 216 SMART SM00028 127 160 5.6E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 Gene3D G3DSA:3.40.50.720 4 325 1.5E-107 T 13-10-2018 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 1.5E-28 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 318 334 6.4E-6 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 2 15 6.4E-6 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 121 135 6.4E-6 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 59 75 6.4E-6 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 SUPERFAMILY SSF51735 1 176 6.27E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 143 240 7.3E-8 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 SUPERFAMILY SSF55347 139 288 2.35E-35 T 13-10-2018 CLM_3513 cb97bbd6bfee6cc0ee9a9d5a185c2d65 369 Gene3D G3DSA:3.30.360.10 139 342 1.5E-107 T 13-10-2018 CLM_3118 e7117ae4f672338361f87b1dd70d4853 148 SMART SM00260 3 140 1.0E-34 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_3118 e7117ae4f672338361f87b1dd70d4853 148 Pfam PF01584 CheW-like domain 8 143 6.2E-33 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_3118 e7117ae4f672338361f87b1dd70d4853 148 Gene3D G3DSA:2.40.50.180 26 135 1.9E-37 T 13-10-2018 CLM_3118 e7117ae4f672338361f87b1dd70d4853 148 Gene3D G3DSA:2.30.30.40 9 134 1.9E-37 T 13-10-2018 CLM_3118 e7117ae4f672338361f87b1dd70d4853 148 SUPERFAMILY SSF50341 3 146 1.22E-34 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 9.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 Gene3D G3DSA:3.90.1150.10 106 466 4.2E-98 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 SMART SM00345 19 78 9.3E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 Gene3D G3DSA:3.40.640.10 141 359 4.2E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 Pfam PF00155 Aminotransferase class I and II 124 457 1.6E-24 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 SUPERFAMILY SSF46785 11 82 1.09E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 SUPERFAMILY SSF53383 95 469 8.47E-84 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3481 a2146e5a0ed665e9ba82b1a755646f38 472 Gene3D G3DSA:1.10.10.10 8 79 4.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1946 2d9ade1645073653edb254218e301cb8 67 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 23 32 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 CLM_1946 2d9ade1645073653edb254218e301cb8 67 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 46 60 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 CLM_1946 2d9ade1645073653edb254218e301cb8 67 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 8 67 9.6E-27 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 CLM_1946 2d9ade1645073653edb254218e301cb8 67 Gene3D G3DSA:1.10.8.910 8 67 7.1E-24 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily CLM_3459 960f7d800e44ed864983503d9d6a5101 593 SUPERFAMILY SSF55681 117 589 5.16E-103 T 13-10-2018 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 ProDom PD609240 SUBUNIT E AMIDOTRANSFERASE 6.3.5.- LIGASE GLUTAMYL-TRNAGLN GLU-ADT BIOSYNTHESIS TRANSFERASE B 301 420 0.004 T 13-10-2018 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Gene3D G3DSA:2.40.50.140 8 115 1.2E-29 T 13-10-2018 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 SUPERFAMILY SSF55261 298 424 8.67E-46 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Pfam PF01336 OB-fold nucleic acid binding domain 26 109 5.6E-16 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Gene3D G3DSA:3.30.1360.30 281 424 1.1E-194 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Pfam PF00152 tRNA synthetases class II (D, K and N) 126 563 4.8E-109 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 216 229 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 199 211 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 523 537 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 479 495 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 9 589 1.1E-237 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 SUPERFAMILY SSF50249 8 116 5.52E-31 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Pfam PF02938 GAD domain 317 409 5.4E-27 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 9 589 33.38 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CLM_3459 960f7d800e44ed864983503d9d6a5101 593 Gene3D G3DSA:3.30.930.10 125 587 1.1E-194 T 13-10-2018 CLM_3934 6825f377136eac4eabcc6af8109233ea 132 Gene3D G3DSA:3.30.1490.10 75 132 1.3E-27 T 13-10-2018 CLM_3934 6825f377136eac4eabcc6af8109233ea 132 Pfam PF00410 Ribosomal protein S8 5 132 1.3E-50 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3934 6825f377136eac4eabcc6af8109233ea 132 Gene3D G3DSA:3.30.1370.30 4 74 1.4E-26 T 13-10-2018 CLM_3934 6825f377136eac4eabcc6af8109233ea 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3934 6825f377136eac4eabcc6af8109233ea 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 32.769 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3934 6825f377136eac4eabcc6af8109233ea 132 SUPERFAMILY SSF56047 2 132 7.46E-48 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3465 fbc814425984658d7dbf8cdbc206f18c 172 Gene3D G3DSA:3.40.50.2020 1 171 6.4E-65 T 13-10-2018 CLM_3465 fbc814425984658d7dbf8cdbc206f18c 172 SUPERFAMILY SSF53271 2 171 1.7E-52 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3465 fbc814425984658d7dbf8cdbc206f18c 172 Pfam PF00156 Phosphoribosyl transferase domain 36 148 1.2E-16 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_3465 fbc814425984658d7dbf8cdbc206f18c 172 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 38.904 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 CLM_3465 fbc814425984658d7dbf8cdbc206f18c 172 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 170 1.3E-72 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 SUPERFAMILY SSF55874 188 353 3.41E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 245 353 1.5E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 SUPERFAMILY SSF47384 121 198 1.53E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 SMART SM00388 131 198 5.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 Gene3D G3DSA:3.30.565.10 200 358 2.6E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 SMART SM00387 244 355 1.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 Gene3D G3DSA:1.10.287.130 124 199 2.8E-19 T 13-10-2018 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 299 309 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 334 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0719 6985e872e7a1b7a0487e510dfa3d1c25 360 Pfam PF00512 His Kinase A (phospho-acceptor) domain 132 197 6.8E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Gene3D G3DSA:3.30.420.40 194 348 2.8E-89 T 13-10-2018 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Pfam PF14450 Cell division protein FtsA 204 365 1.2E-18 T 13-10-2018 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 SUPERFAMILY SSF53067 196 366 2.52E-31 T 13-10-2018 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Gene3D G3DSA:3.90.640.10 232 296 2.8E-89 T 13-10-2018 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Gene3D G3DSA:3.30.1490.110 80 166 2.8E-89 T 13-10-2018 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 5 368 2.1E-93 T 13-10-2018 IPR020823 Cell division protein FtsA CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 SMART SM00842 5 193 5.8E-69 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 PIRSF PIRSF003101 1 417 1.3E-109 T 13-10-2018 IPR020823 Cell division protein FtsA CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Pfam PF02491 SHS2 domain inserted in FTSA 86 158 1.5E-22 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 SUPERFAMILY SSF53067 3 194 1.19E-45 T 13-10-2018 CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Hamap MF_02033 Cell division protein FtsA [ftsA]. 1 417 26.217 T 13-10-2018 IPR020823 Cell division protein FtsA CLM_2840 676d892e5ad4d53b32dbf9529f47207b 417 Gene3D G3DSA:3.30.420.40 8 353 2.8E-89 T 13-10-2018 CLM_0530 da15fdf9209bfca35993530bd307c311 403 Pfam PF00563 EAL domain 8 193 5.1E-18 T 13-10-2018 IPR001633 EAL domain CLM_0530 da15fdf9209bfca35993530bd307c311 403 SUPERFAMILY SSF109604 184 401 2.42E-36 T 13-10-2018 CLM_0530 da15fdf9209bfca35993530bd307c311 403 Pfam PF08668 HDOD domain 209 322 4.7E-12 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD CLM_0530 da15fdf9209bfca35993530bd307c311 403 Gene3D G3DSA:3.20.20.450 2 196 2.4E-20 T 13-10-2018 IPR035919 EAL domain superfamily CLM_0530 da15fdf9209bfca35993530bd307c311 403 SUPERFAMILY SSF141868 4 201 5.89E-29 T 13-10-2018 IPR035919 EAL domain superfamily CLM_0530 da15fdf9209bfca35993530bd307c311 403 Gene3D G3DSA:1.10.3210.10 197 327 1.4E-16 T 13-10-2018 CLM_0530 da15fdf9209bfca35993530bd307c311 403 SMART SM00052 1 198 9.8E-6 T 13-10-2018 IPR001633 EAL domain CLM_0530 da15fdf9209bfca35993530bd307c311 403 PIRSF PIRSF003180 1 403 6.5E-122 T 13-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 Gene3D G3DSA:3.90.45.10 1 147 4.8E-55 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 PRINTS PR01576 Peptide deformylase signature 86 97 3.2E-35 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 PRINTS PR01576 Peptide deformylase signature 98 116 3.2E-35 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 PRINTS PR01576 Peptide deformylase signature 117 146 3.2E-35 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 PRINTS PR01576 Peptide deformylase signature 33 62 3.2E-35 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 SUPERFAMILY SSF56420 2 145 1.23E-54 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 PIRSF PIRSF004749 1 147 2.6E-48 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 144 3.0E-48 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 Pfam PF01327 Polypeptide deformylase 4 144 2.9E-49 T 13-10-2018 IPR023635 Peptide deformylase CLM_2810 7184e403e5639d9d6af5b330ac951ed5 147 Hamap MF_00163 Peptide deformylase [def]. 2 147 28.071 T 13-10-2018 IPR023635 Peptide deformylase CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Pfam PF00675 Insulinase (Peptidase family M16) 59 136 8.2E-7 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 SUPERFAMILY SSF63411 261 522 2.85E-64 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Gene3D G3DSA:3.30.830.10 531 780 2.3E-153 T 13-10-2018 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Gene3D G3DSA:3.30.830.10 497 949 2.3E-153 T 13-10-2018 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Pfam PF08367 Peptidase M16C associated 465 713 5.3E-79 T 13-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Pfam PF05193 Peptidase M16 inactive domain 207 389 6.5E-23 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Gene3D G3DSA:3.30.830.10 256 487 3.4E-69 T 13-10-2018 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 SMART SM01264 464 714 2.4E-101 T 13-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 SUPERFAMILY SSF63411 524 772 2.93E-66 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 SUPERFAMILY SSF63411 8 252 1.03E-50 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 Gene3D G3DSA:3.30.830.10 1 255 1.1E-89 T 13-10-2018 CLM_3745 9ca43ff17cb3b111c618a81c16d564ad 975 SUPERFAMILY SSF63411 783 974 2.62E-37 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 447 2.4E-36 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.0E-33 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 1.0E-33 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 274 1.0E-33 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 189 1.0E-33 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.0E-33 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 400 415 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 422 442 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 273 1.1E-69 T 13-10-2018 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 36 46 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 PIRSF PIRSF000350 1 457 4.6E-93 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 321 5.7E-63 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 Gene3D G3DSA:3.30.390.30 338 462 4.1E-44 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 457 8.0E-158 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 SUPERFAMILY SSF55424 337 457 4.81E-40 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 Gene3D G3DSA:3.50.50.60 149 271 1.1E-106 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 Gene3D G3DSA:3.50.50.60 3 328 1.1E-106 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0819 4ef4ab9f683d7ddcd02a3b575a7d8537 462 SUPERFAMILY SSF51905 3 315 2.59E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 SUPERFAMILY SSF52283 32 119 1.06E-12 T 13-10-2018 CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 Gene3D G3DSA:3.40.50.720 97 282 5.6E-80 T 13-10-2018 CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 217 233 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 12 310 1.0E-11 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 277 1.3E-51 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 SUPERFAMILY SSF51735 98 279 7.53E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_4085 ca42c65538a811ff28e6fecc83bfbc0c 315 Gene3D G3DSA:3.40.50.720 31 307 5.6E-80 T 13-10-2018 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Pfam PF03448 MgtE intracellular N domain 23 125 2.3E-28 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Pfam PF01769 Divalent cation transporter 313 435 4.1E-32 T 13-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 SMART SM00924 23 127 1.6E-32 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Gene3D G3DSA:1.25.60.10 1 122 1.3E-25 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 SUPERFAMILY SSF161093 270 442 7.32E-53 T 13-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Gene3D G3DSA:3.10.580.10 123 251 1.2E-42 T 13-10-2018 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 SUPERFAMILY SSF158791 2 124 2.09E-27 T 13-10-2018 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 SMART SM00116 134 187 53.0 T 13-10-2018 IPR000644 CBS domain CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 SMART SM00116 198 246 3.3E-5 T 13-10-2018 IPR000644 CBS domain CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 SUPERFAMILY SSF54631 127 266 4.3E-31 T 13-10-2018 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Gene3D G3DSA:1.10.357.20 265 442 3.7E-62 T 13-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 TIGRFAM TIGR00400 mgtE: magnesium transporter 3 444 1.1E-157 T 13-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Pfam PF00571 CBS domain 191 245 3.6E-8 T 13-10-2018 IPR000644 CBS domain CLM_1281 390e16a971d3e803b42a2e1ac5772ffb 444 Pfam PF00571 CBS domain 127 183 1.2E-5 T 13-10-2018 IPR000644 CBS domain CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 151 6.0E-22 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 SMART SM00662 20 227 5.9E-94 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 SUPERFAMILY SSF56553 50 171 7.06E-40 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 20 312 3.5E-120 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Gene3D G3DSA:2.170.120.12 50 170 1.4E-87 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Gene3D G3DSA:3.30.1360.10 16 220 1.4E-87 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 SUPERFAMILY SSF55257 4 225 9.03E-33 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 313 36.418 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 253 311 8.0E-23 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Gene3D G3DSA:1.10.150.20 237 314 6.6E-32 T 13-10-2018 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 221 6.6E-26 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 SUPERFAMILY SSF47789 247 311 2.35E-23 T 13-10-2018 CLM_3919 bf3eafaac6e45c455c2d6d264c3b3474 315 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 240 304 8.0E-28 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 SUPERFAMILY SSF111369 68 232 4.97E-9 T 13-10-2018 CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 352 1.9E-34 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 Gene3D G3DSA:2.40.30.170 47 278 3.3E-43 T 13-10-2018 CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 238 2.9E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 Gene3D G3DSA:1.10.287.470 91 160 3.3E-43 T 13-10-2018 CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 Gene3D G3DSA:2.40.420.20 42 337 3.3E-43 T 13-10-2018 CLM_0128 1a99efcdff3e5432a71b29b93549079b 353 Gene3D G3DSA:2.40.50.100 58 195 3.3E-43 T 13-10-2018 CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 Pfam PF03054 tRNA methyl transferase 3 354 4.2E-125 T 13-10-2018 CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 Gene3D G3DSA:3.40.50.620 1 212 6.2E-85 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 Gene3D G3DSA:2.40.30.10 276 356 1.6E-26 T 13-10-2018 CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 355 41.102 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 354 6.5E-114 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 Gene3D G3DSA:2.30.30.280 217 275 1.5E-16 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CLM_1336 dbc823ac89ffd5cca05f8b1f32ec5f9c 356 SUPERFAMILY SSF52402 2 246 1.68E-59 T 13-10-2018 CLM_2662 a86607a59d74b733c967fc9068882019 483 TIGRFAM TIGR01538 portal_SPP1: phage portal protein, SPP1 family 20 457 2.3E-58 T 13-10-2018 IPR006428 Portal protein, SPP1-type CLM_2662 a86607a59d74b733c967fc9068882019 483 Pfam PF05133 Phage portal protein, SPP1 Gp6-like 31 461 7.3E-89 T 13-10-2018 IPR021145 Portal protein CLM_3959 24aa586355096b4616c150807e00f803 229 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 1 227 44.82 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CLM_3959 24aa586355096b4616c150807e00f803 229 Pfam PF00687 Ribosomal protein L1p/L10e family 28 218 1.3E-59 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CLM_3959 24aa586355096b4616c150807e00f803 229 ProSitePatterns PS01199 Ribosomal protein L1 signature. 118 137 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3959 24aa586355096b4616c150807e00f803 229 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 2 224 2.4E-106 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CLM_3959 24aa586355096b4616c150807e00f803 229 Gene3D G3DSA:3.40.50.790 65 157 4.9E-90 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CLM_3959 24aa586355096b4616c150807e00f803 229 SUPERFAMILY SSF56808 3 224 5.62E-87 T 13-10-2018 IPR023674 Ribosomal protein L1-like CLM_3959 24aa586355096b4616c150807e00f803 229 Gene3D G3DSA:3.30.190.20 18 223 4.9E-90 T 13-10-2018 CLM_3959 24aa586355096b4616c150807e00f803 229 PIRSF PIRSF002155 1 224 3.9E-82 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 82 346 2.1E-45 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 580 700 6.4E-33 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Gene3D G3DSA:1.20.1110.10 54 859 6.4E-285 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 SMART SM00831 3 76 1.3E-18 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Gene3D G3DSA:3.40.1110.10 334 514 6.4E-285 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Pfam PF00702 haloacid dehalogenase-like hydrolase 321 623 2.3E-24 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 SUPERFAMILY SSF81665 2 865 1.7E-115 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Pfam PF00690 Cation transporter/ATPase, N-terminus 5 71 1.0E-17 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Pfam PF00689 Cation transporting ATPase, C-terminus 693 862 9.1E-41 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 666 2.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 581 597 2.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 467 485 2.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 609 625 2.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 SUPERFAMILY SSF56784 322 714 2.82E-60 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 326 332 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 609 628 3.2E-39 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 645 3.2E-39 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 539 3.2E-39 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 518 3.2E-39 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 161 175 3.2E-39 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 324 338 3.2E-39 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Gene3D G3DSA:3.40.50.1000 321 654 6.4E-285 T 13-10-2018 IPR023214 HAD superfamily CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Gene3D G3DSA:2.70.150.10 19 227 6.4E-285 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 SUPERFAMILY SSF81653 113 224 3.53E-33 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 Pfam PF00122 E1-E2 ATPase 110 303 1.8E-59 T 13-10-2018 CLM_1780 3c16c0a3d75bca3b9b13c1fc156b0247 878 SUPERFAMILY SSF81660 330 518 3.71E-51 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Gene3D G3DSA:3.40.50.10490 446 593 3.4E-146 T 13-10-2018 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Pfam PF13522 Glutamine amidotransferase domain 64 191 2.6E-21 T 13-10-2018 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 SUPERFAMILY SSF56235 2 234 5.66E-74 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Gene3D G3DSA:3.60.20.10 2 239 1.1E-78 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 608 40.468 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 608 2.1E-248 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Gene3D G3DSA:3.40.50.10490 246 607 3.4E-146 T 13-10-2018 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Pfam PF01380 SIS domain 461 590 4.2E-24 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 Pfam PF01380 SIS domain 291 415 2.1E-31 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_3875 5790ca5dca1f37ff1393dde1551db77a 608 SUPERFAMILY SSF53697 245 608 8.91E-108 T 13-10-2018 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 Gene3D G3DSA:3.30.565.10 148 303 2.1E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 SUPERFAMILY SSF47384 75 144 2.35E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 299 2.5E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 262 280 2.5E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 227 241 2.5E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 245 255 2.5E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 SUPERFAMILY SSF55874 134 300 1.26E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 Gene3D G3DSA:1.10.287.130 71 144 2.1E-16 T 13-10-2018 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 190 301 1.2E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 SMART SM00388 78 144 3.2E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 Pfam PF00512 His Kinase A (phospho-acceptor) domain 80 142 6.9E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2592 a394a229ec7faf42637f5dfafd61d6a4 303 SMART SM00387 190 302 9.3E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0891 25424803048a9cb41d4174b66785c34d 490 Pfam PF06597 Clostridium P-47 protein 5 483 7.5E-68 T 13-10-2018 IPR010567 Clostridium P47 protein CLM_1610 417a9383e01208973660fbe0235b2bb2 278 SUPERFAMILY SSF54675 1 107 4.32E-29 T 13-10-2018 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 19 106 5.3E-30 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 Gene3D G3DSA:3.20.20.70 122 264 1.2E-110 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 10 273 4.3E-106 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 Gene3D G3DSA:3.90.1170.20 11 272 1.2E-110 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 SUPERFAMILY SSF51690 108 273 8.24E-61 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 PIRSF PIRSF006250 2 276 5.4E-98 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 CLM_1610 417a9383e01208973660fbe0235b2bb2 278 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 108 273 1.6E-63 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 Pfam PF06483 Chitinase C 469 597 3.0E-7 T 13-10-2018 IPR009470 Chitinase, C-terminal KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 SUPERFAMILY SSF54556 338 422 5.04E-19 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 ProSitePatterns PS01095 Chitinases family 18 active site. 189 197 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 Gene3D G3DSA:3.20.20.80 55 451 2.9E-98 T 13-10-2018 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 Gene3D G3DSA:2.60.40.290 500 606 8.8E-10 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 SUPERFAMILY SSF49384 504 608 1.46E-12 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 Gene3D G3DSA:3.10.50.10 337 422 2.9E-98 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 Pfam PF00704 Glycosyl hydrolases family 18 54 451 2.5E-84 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 SMART SM00636 52 451 5.0E-116 T 13-10-2018 IPR011583 Chitinase II GO:0008061 CLM_0871 a68288f4dbab7ef27dc8121fa1c5c77e 617 SUPERFAMILY SSF51445 51 453 6.32E-80 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.9E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 1.4E-221 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 SUPERFAMILY SSF50447 207 304 2.75E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Gene3D G3DSA:3.40.50.300 1 205 2.4E-72 T 13-10-2018 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 SUPERFAMILY SSF50465 305 396 1.81E-34 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Gene3D G3DSA:2.40.30.10 341 395 2.4E-27 T 13-10-2018 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Gene3D G3DSA:2.40.30.10 208 337 1.8E-52 T 13-10-2018 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 4.9E-60 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 SUPERFAMILY SSF52540 4 216 2.36E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 1.3E-31 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 60.003 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3964 8ded8c8d9980985f6d6f32c2f162b99e 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 1.5E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.9E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 1.4E-221 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 SUPERFAMILY SSF50447 207 304 2.75E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Gene3D G3DSA:3.40.50.300 1 205 2.4E-72 T 13-10-2018 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 SUPERFAMILY SSF50465 305 396 1.81E-34 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Gene3D G3DSA:2.40.30.10 341 395 2.4E-27 T 13-10-2018 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Gene3D G3DSA:2.40.30.10 208 337 1.8E-52 T 13-10-2018 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 4.9E-60 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 SUPERFAMILY SSF52540 4 216 2.36E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 1.3E-31 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.6E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 60.003 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3950 8ded8c8d9980985f6d6f32c2f162b99e 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 1.5E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 SMART SM00419 170 218 1.6E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 Pfam PF13545 Crp-like helix-turn-helix domain 152 224 2.2E-16 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 Gene3D G3DSA:2.60.120.1460 18 226 5.6E-50 T 13-10-2018 CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 SMART SM00100 14 131 2.8E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 Pfam PF00027 Cyclic nucleotide-binding domain 34 116 1.4E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 SUPERFAMILY SSF51206 9 143 3.01E-29 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CLM_1106 2452625a2fe9bf70e58dc43b2410c1d0 229 SUPERFAMILY SSF46785 149 226 4.93E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3272 c074920cf99646eac0e48df0031b60eb 331 Gene3D G3DSA:3.30.1330.10 2 164 2.1E-67 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_3272 c074920cf99646eac0e48df0031b60eb 331 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 2 331 45.127 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3272 c074920cf99646eac0e48df0031b60eb 331 Pfam PF00586 AIR synthase related protein, N-terminal domain 60 157 7.1E-15 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CLM_3272 c074920cf99646eac0e48df0031b60eb 331 Gene3D G3DSA:3.90.650.10 165 331 2.0E-58 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_3272 c074920cf99646eac0e48df0031b60eb 331 Pfam PF02769 AIR synthase related protein, C-terminal domain 171 327 1.8E-30 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CLM_3272 c074920cf99646eac0e48df0031b60eb 331 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 2 323 1.5E-131 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3272 c074920cf99646eac0e48df0031b60eb 331 SUPERFAMILY SSF55326 2 164 1.35E-50 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_3272 c074920cf99646eac0e48df0031b60eb 331 SUPERFAMILY SSF56042 165 328 1.11E-50 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 SUPERFAMILY SSF109604 239 403 1.06E-30 T 13-10-2018 CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 SMART SM00471 243 378 2.1E-10 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 SMART SM00471 39 165 0.75 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 SUPERFAMILY SSF109604 34 193 2.51E-22 T 13-10-2018 CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 Gene3D G3DSA:1.10.3210.10 196 394 4.1E-48 T 13-10-2018 CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 Gene3D G3DSA:1.10.3210.10 33 195 8.6E-30 T 13-10-2018 CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 Pfam PF01966 HD domain 44 153 2.1E-8 T 13-10-2018 IPR006674 HD domain CLM_3755 aba8a884f5c161a3edf82a127f0085e4 413 Pfam PF01966 HD domain 248 368 4.0E-18 T 13-10-2018 IPR006674 HD domain CLM_2641 dde99e50c75da33c61ee968d285d5c17 364 Pfam PF04865 Baseplate J-like protein 64 319 1.1E-52 T 13-10-2018 IPR006949 Baseplate protein J-like CLM_2385 e3999a18ed3538256ce09aa512ba48ba 148 SMART SM00530 6 61 7.6E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2385 e3999a18ed3538256ce09aa512ba48ba 148 SUPERFAMILY SSF47413 1 66 2.3E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2385 e3999a18ed3538256ce09aa512ba48ba 148 Pfam PF01381 Helix-turn-helix 9 61 1.0E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2385 e3999a18ed3538256ce09aa512ba48ba 148 Gene3D G3DSA:1.10.260.40 1 65 6.4E-23 T 13-10-2018 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 SUPERFAMILY SSF53920 39 326 4.05E-62 T 13-10-2018 IPR009016 Iron hydrogenase CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 423 522 2.4E-7 T 13-10-2018 IPR000014 PAS domain CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 SUPERFAMILY SSF54862 5 80 1.59E-18 T 13-10-2018 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Gene3D G3DSA:1.10.15.40 367 421 2.5E-5 T 13-10-2018 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Gene3D G3DSA:3.40.950.20 109 320 7.7E-24 T 13-10-2018 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Pfam PF12838 4Fe-4S dicluster domain 11 54 9.3E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Pfam PF04060 Putative Fe-S cluster 381 409 4.9E-7 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 72 299 3.0E-51 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 SMART SM00091 418 484 0.0066 T 13-10-2018 IPR000014 PAS domain CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Gene3D G3DSA:3.30.450.20 422 518 2.0E-8 T 13-10-2018 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 Gene3D G3DSA:3.30.70.20 3 78 1.6E-12 T 13-10-2018 CLM_1989 fe7f137a02ce602d85f55ee44b65fda6 579 SUPERFAMILY SSF55785 423 518 7.23E-6 T 13-10-2018 IPR035965 PAS domain superfamily CLM_0353 ab9687053ab5352e333886590d0ec459 224 SUPERFAMILY SSF52172 2 126 1.42E-33 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0353 ab9687053ab5352e333886590d0ec459 224 SMART SM00448 3 113 1.2E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0353 ab9687053ab5352e333886590d0ec459 224 Pfam PF00072 Response regulator receiver domain 5 111 3.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0353 ab9687053ab5352e333886590d0ec459 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 221 3.4E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0353 ab9687053ab5352e333886590d0ec459 224 SMART SM00862 150 221 1.6E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0353 ab9687053ab5352e333886590d0ec459 224 SUPERFAMILY SSF46894 131 222 9.92E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0353 ab9687053ab5352e333886590d0ec459 224 Gene3D G3DSA:3.40.50.2300 3 128 4.4E-32 T 13-10-2018 CLM_0353 ab9687053ab5352e333886590d0ec459 224 Gene3D G3DSA:1.10.10.10 129 224 6.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1740 5a20b0fff203ea6a9ebf630051e3c225 340 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 16 336 52.12 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CLM_1740 5a20b0fff203ea6a9ebf630051e3c225 340 PIRSF PIRSF001555 12 340 6.3E-167 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CLM_1740 5a20b0fff203ea6a9ebf630051e3c225 340 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 26 334 7.8E-122 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CLM_1740 5a20b0fff203ea6a9ebf630051e3c225 340 Gene3D G3DSA:3.30.930.10 18 336 2.5E-152 T 13-10-2018 CLM_1740 5a20b0fff203ea6a9ebf630051e3c225 340 Pfam PF03590 Aspartate-ammonia ligase 25 250 3.0E-113 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CLM_1740 5a20b0fff203ea6a9ebf630051e3c225 340 SUPERFAMILY SSF55681 20 334 4.56E-101 T 13-10-2018 CLM_0769 928d8f4360eaf95ece33ca8be32b0583 272 Pfam PF02811 PHP domain 5 145 2.2E-10 T 13-10-2018 IPR004013 PHP domain GO:0003824 CLM_0769 928d8f4360eaf95ece33ca8be32b0583 272 Gene3D G3DSA:1.10.150.650 99 172 2.5E-59 T 13-10-2018 CLM_0769 928d8f4360eaf95ece33ca8be32b0583 272 Gene3D G3DSA:3.20.20.140 5 248 2.5E-59 T 13-10-2018 CLM_0769 928d8f4360eaf95ece33ca8be32b0583 272 SMART SM00481 4 69 1.1E-14 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_0769 928d8f4360eaf95ece33ca8be32b0583 272 SUPERFAMILY SSF89550 1 260 4.05E-43 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_2761 d4f8065f7e28773a3a7a244476a0ac89 372 Gene3D G3DSA:3.40.50.11540 89 237 2.6E-18 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2761 d4f8065f7e28773a3a7a244476a0ac89 372 Pfam PF13375 RnfC Barrel sandwich hybrid domain 3 62 7.8E-14 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2761 d4f8065f7e28773a3a7a244476a0ac89 372 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 85 227 3.2E-44 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2761 d4f8065f7e28773a3a7a244476a0ac89 372 TIGRFAM TIGR04481 PR_assoc_PrdC: proline reductase-associated electron transfer protein PrdC 6 371 7.4E-158 T 13-10-2018 IPR031001 Proline reductase-associated electron transfer protein PrdC CLM_2761 d4f8065f7e28773a3a7a244476a0ac89 372 SUPERFAMILY SSF142019 42 245 9.55E-52 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 SUPERFAMILY SSF51395 40 336 2.15E-61 T 13-10-2018 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 Gene3D G3DSA:3.20.20.70 36 337 7.9E-79 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 PIRSF PIRSF000138 185 337 2.9E-61 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 PIRSF PIRSF000138 2 196 4.1E-18 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 Pfam PF01070 FMN-dependent dehydrogenase 37 180 5.0E-12 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 Pfam PF01070 FMN-dependent dehydrogenase 194 336 8.8E-59 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 CLM_3526 592f7e35d68770d458e49af3eb81477e 337 SMART SM01240 143 337 0.0016 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF02389 Cornifin (SPRR) family 538 634 7.7E-7 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF05257 CHAP domain 53 137 4.3E-13 T 13-10-2018 IPR007921 CHAP domain CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Gene3D G3DSA:3.90.1720.10 582 771 1.3E-57 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Gene3D G3DSA:2.30.30.40 335 406 1.1E-17 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Gene3D G3DSA:2.30.30.40 269 326 4.7E-19 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Gene3D G3DSA:2.30.30.40 186 244 1.2E-16 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF08239 Bacterial SH3 domain 194 244 9.6E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF08239 Bacterial SH3 domain 434 485 2.3E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF08239 Bacterial SH3 domain 356 406 8.2E-14 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF08239 Bacterial SH3 domain 276 327 4.5E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 SUPERFAMILY SSF54001 36 163 2.55E-18 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Pfam PF00877 NlpC/P60 family 677 764 6.3E-28 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Gene3D G3DSA:2.30.30.40 425 496 1.7E-18 T 13-10-2018 CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 SUPERFAMILY SSF54001 662 765 1.71E-42 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 SMART SM00287 267 330 7.6E-11 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 SMART SM00287 347 409 1.4E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 SMART SM00287 186 248 7.3E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 SMART SM00287 424 488 8.7E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_0596 6ced5e2d98951a8749bcbd09b360145b 774 Gene3D G3DSA:3.90.1720.10 46 163 8.7E-22 T 13-10-2018 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 SUPERFAMILY SSF55681 93 339 5.97E-80 T 13-10-2018 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 SUPERFAMILY SSF46589 16 99 2.25E-19 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 21 86 1.9E-23 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 339 46.696 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 339 2.2E-104 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 Gene3D G3DSA:3.30.930.10 8 339 5.9E-123 T 13-10-2018 CLM_3538 fd8a267babc1e10c29717fd4a6b54a4c 339 Pfam PF01409 tRNA synthetases class II core domain (F) 93 339 5.8E-105 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 CLM_3810 4f09e1c0abd2104ee922feaa2f43c58e 199 SUPERFAMILY SSF56349 7 192 1.41E-38 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_3810 4f09e1c0abd2104ee922feaa2f43c58e 199 Gene3D G3DSA:1.10.443.10 4 199 3.0E-40 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_3810 4f09e1c0abd2104ee922feaa2f43c58e 199 Pfam PF00589 Phage integrase family 10 179 9.2E-33 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 Gene3D G3DSA:1.20.1480.50 157 253 6.7E-9 T 13-10-2018 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 Gene3D G3DSA:3.30.565.10 334 486 1.8E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2142 b70daafd1b8e882188c6788e134a655f 487 SMART SM00304 200 252 3.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 SMART SM00388 260 327 8.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 SUPERFAMILY SSF55874 317 484 4.85E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2142 b70daafd1b8e882188c6788e134a655f 487 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 326 8.9E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 SUPERFAMILY SSF158472 201 250 9.68E-9 T 13-10-2018 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 Gene3D G3DSA:1.10.287.130 254 330 1.2E-17 T 13-10-2018 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 441 7.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 427 7.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 466 7.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 SMART SM00387 376 487 3.9E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2142 b70daafd1b8e882188c6788e134a655f 487 SUPERFAMILY SSF47384 246 328 3.34E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2142 b70daafd1b8e882188c6788e134a655f 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 485 1.1E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 230 3.5E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 SUPERFAMILY SSF52172 2 130 3.98E-40 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 Gene3D G3DSA:1.10.10.10 132 235 5.3E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 SMART SM00862 154 230 1.7E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 Pfam PF00072 Response regulator receiver domain 6 115 5.5E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 Gene3D G3DSA:3.40.50.2300 1 131 3.2E-38 T 13-10-2018 CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 SUPERFAMILY SSF46894 132 231 4.25E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_2593 969b10bd23b3881e6fc0ec0eb191a6ab 235 SMART SM00448 4 114 3.4E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 Gene3D G3DSA:1.10.1060.10 2 138 6.5E-43 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 PRINTS PR00419 Adrenodoxin reductase family signature 140 162 5.6E-19 T 13-10-2018 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 PRINTS PR00419 Adrenodoxin reductase family signature 206 216 5.6E-19 T 13-10-2018 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 PRINTS PR00419 Adrenodoxin reductase family signature 163 176 5.6E-19 T 13-10-2018 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 PRINTS PR00419 Adrenodoxin reductase family signature 281 295 5.6E-19 T 13-10-2018 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 14 457 2.8E-182 T 13-10-2018 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 139 445 1.1E-34 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 SUPERFAMILY SSF46548 5 149 1.57E-35 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 SUPERFAMILY SSF51971 138 390 1.59E-67 T 13-10-2018 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 17 127 2.3E-45 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 Gene3D G3DSA:3.50.50.60 139 276 1.7E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3738 1346d5fb68c310e622db05d34d05cca1 460 Gene3D G3DSA:3.50.50.60 277 460 2.5E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 SUPERFAMILY SSF54211 470 638 4.55E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 TIGRFAM TIGR02903 spore_lon_C: ATP-dependent protease, Lon family 28 639 0.0 T 13-10-2018 IPR014252 Sporulation protease LonC CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 SMART SM00382 199 378 5.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 SUPERFAMILY SSF52540 164 443 3.69E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 598 616 1.3E-31 T 13-10-2018 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 470 486 1.3E-31 T 13-10-2018 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 207 226 1.3E-31 T 13-10-2018 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 545 564 1.3E-31 T 13-10-2018 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 575 594 1.3E-31 T 13-10-2018 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 548 556 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 Gene3D G3DSA:3.30.230.10 459 639 9.9E-53 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 442 637 5.5E-34 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 375 9.6E-16 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_4126 ebcffd6cf24edd5113609facb035df4d 639 Gene3D G3DSA:3.40.50.300 161 376 6.2E-36 T 13-10-2018 CLM_1102 4e20f7b4aa9c6c1e2c58945c8d6d1e05 162 Pfam PF12822 ECF transporter, substrate-specific component 4 150 5.6E-19 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 CLM_1102 4e20f7b4aa9c6c1e2c58945c8d6d1e05 162 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 65 0.008 T 13-10-2018 CLM_1102 4e20f7b4aa9c6c1e2c58945c8d6d1e05 162 Gene3D G3DSA:1.10.1760.20 1 160 2.0E-22 T 13-10-2018 CLM_1911 b46d9a2c4f051d435848d213c5a36435 174 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 12 121 2.5E-33 T 13-10-2018 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain CLM_1911 b46d9a2c4f051d435848d213c5a36435 174 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 140 172 2.0E-6 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CLM_1911 b46d9a2c4f051d435848d213c5a36435 174 SUPERFAMILY SSF143555 3 137 5.23E-46 T 13-10-2018 CLM_1911 b46d9a2c4f051d435848d213c5a36435 174 Gene3D G3DSA:3.30.1330.130 1 132 4.5E-41 T 13-10-2018 CLM_1911 b46d9a2c4f051d435848d213c5a36435 174 PIRSF PIRSF006578 98 173 5.4E-19 T 13-10-2018 IPR026328 Formylmethanofuran dehydrogenase, subunit E CLM_1911 b46d9a2c4f051d435848d213c5a36435 174 PIRSF PIRSF006578 2 110 9.0E-46 T 13-10-2018 IPR026328 Formylmethanofuran dehydrogenase, subunit E CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 Gene3D G3DSA:3.40.50.300 288 582 1.2E-68 T 13-10-2018 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 SMART SM00533 9 311 1.5E-9 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 Pfam PF00488 MutS domain V 325 506 4.7E-34 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 Gene3D G3DSA:1.10.1420.10 113 223 3.5E-6 T 13-10-2018 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 404 420 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 PIRSF PIRSF005814 1 631 1.4E-191 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 Gene3D G3DSA:1.10.1420.10 21 276 3.5E-6 T 13-10-2018 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 SUPERFAMILY SSF52540 289 508 1.81E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 SMART SM00534 322 507 2.8E-59 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_0739 b85ea60e0945d0ea9a8e22b5986df13c 631 SUPERFAMILY SSF48334 21 284 4.84E-21 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_2233 182a87d3df24e109cb20169d06fef1ab 240 SMART SM00382 26 221 2.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2233 182a87d3df24e109cb20169d06fef1ab 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2233 182a87d3df24e109cb20169d06fef1ab 240 Pfam PF00005 ABC transporter 17 165 4.0E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2233 182a87d3df24e109cb20169d06fef1ab 240 Gene3D G3DSA:3.40.50.300 1 240 3.2E-80 T 13-10-2018 CLM_2233 182a87d3df24e109cb20169d06fef1ab 240 SUPERFAMILY SSF52540 1 235 8.87E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2233 182a87d3df24e109cb20169d06fef1ab 240 PIRSF PIRSF039085 1 240 7.8E-120 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SMART SM00387 456 568 8.8E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Pfam PF00672 HAMP domain 180 225 4.2E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Gene3D G3DSA:3.30.450.20 239 339 2.2E-14 T 13-10-2018 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SMART SM00304 178 230 2.0E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SUPERFAMILY SSF55785 231 319 1.86E-8 T 13-10-2018 IPR035965 PAS domain superfamily CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Gene3D G3DSA:1.10.287.130 340 415 4.6E-25 T 13-10-2018 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 234 345 2.0E-7 T 13-10-2018 IPR000014 PAS domain CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Pfam PF16736 Single Cache-like 30 134 3.1E-7 T 13-10-2018 IPR031967 PhoR, single Cache-like domain CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 507 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 546 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 565 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 521 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SUPERFAMILY SSF47384 331 411 6.47E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 458 567 2.3E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Pfam PF00512 His Kinase A (phospho-acceptor) domain 346 410 3.9E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SMART SM00388 346 411 4.4E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SUPERFAMILY SSF55874 400 566 3.14E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Gene3D G3DSA:1.20.1480.50 141 236 3.8E-11 T 13-10-2018 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SUPERFAMILY SSF158472 180 227 5.1E-10 T 13-10-2018 CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 SMART SM00091 237 302 6.5E-6 T 13-10-2018 IPR000014 PAS domain CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Gene3D G3DSA:3.30.565.10 416 568 5.4E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2831 09ad27f033b170ca44fe1205a664ef0d 569 Pfam PF13188 PAS domain 238 288 8.7E-6 T 13-10-2018 IPR000014 PAS domain CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Pfam PF00012 Hsp70 protein 79 576 1.2E-221 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Pfam PF00012 Hsp70 protein 4 78 1.3E-30 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 SUPERFAMILY SSF100934 479 577 5.49E-14 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 SUPERFAMILY SSF53067 2 159 1.08E-59 T 13-10-2018 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Gene3D G3DSA:1.20.1270.10 497 579 1.0E-24 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 168 181 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Gene3D G3DSA:2.60.34.10 355 496 6.3E-62 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 441 457 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 360 379 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 337 357 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 3 16 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 54 62 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 31 43 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 174 184 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 306 322 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 PRINTS PR00301 70kDa heat shock protein signature 114 134 5.2E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 SUPERFAMILY SSF100920 356 512 1.27E-60 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 SUPERFAMILY SSF53067 163 354 9.86E-68 T 13-10-2018 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Gene3D G3DSA:3.90.640.10 201 288 6.2E-145 T 13-10-2018 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Gene3D G3DSA:3.30.420.40 5 351 6.2E-145 T 13-10-2018 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 309 323 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 620 37.267 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 576 3.2E-289 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 CLM_3354 3b6a59d4692d8193acbad584f05f8c10 623 Gene3D G3DSA:3.30.420.40 156 338 6.2E-145 T 13-10-2018 CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 Hamap MF_02058 Choline trimethylamine-lyase [cutC]. 54 846 57.663 T 13-10-2018 IPR030897 Choline trimethylamine-lyase GO:0016829 MetaCyc: PWY-7167 CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 Pfam PF02901 Pyruvate formate lyase-like 58 707 2.3E-232 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 TIGRFAM TIGR04394 choline_CutC: choline trimethylamine-lyase 58 846 0.0 T 13-10-2018 IPR030897 Choline trimethylamine-lyase GO:0016829 MetaCyc: PWY-7167 CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 Pfam PF01228 Glycine radical 724 827 9.0E-26 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 Gene3D G3DSA:3.20.70.40 44 846 0.0 T 13-10-2018 CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 ProSitePatterns PS00850 Glycine radical domain signature. 816 824 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CLM_2326 c731ae4378ab6532ede32d500ef1cc64 846 SUPERFAMILY SSF51998 58 843 1.19E-235 T 13-10-2018 CLM_0762 88d9e1674b9e66253f930a60ede9d1c5 416 SUPERFAMILY SSF55874 22 188 1.95E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0762 88d9e1674b9e66253f930a60ede9d1c5 416 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 95 3.5E-7 T 13-10-2018 CLM_0762 88d9e1674b9e66253f930a60ede9d1c5 416 Gene3D G3DSA:3.30.565.10 21 187 1.9E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2002 63870c90e161d68a5ffda7639807f198 349 Pfam PF00117 Glutamine amidotransferase class-I 173 346 1.5E-47 T 13-10-2018 IPR017926 Glutamine amidotransferase CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00097 Anthranilate synthase component II signature 213 222 1.3E-7 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00097 Anthranilate synthase component II signature 323 336 1.3E-7 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00097 Anthranilate synthase component II signature 240 251 1.3E-7 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 240 256 4.1E-35 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 210 224 4.1E-35 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 257 274 4.1E-35 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 293 4.1E-35 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 171 185 4.1E-35 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 348 46.859 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2002 63870c90e161d68a5ffda7639807f198 349 Gene3D G3DSA:3.50.30.20 1 148 2.7E-56 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2002 63870c90e161d68a5ffda7639807f198 349 Gene3D G3DSA:3.40.50.880 171 348 3.2E-37 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00096 Glutamine amidotransferase superfamily signature 323 336 1.3E-12 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00096 Glutamine amidotransferase superfamily signature 213 222 1.3E-12 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 PRINTS PR00096 Glutamine amidotransferase superfamily signature 240 251 1.3E-12 T 13-10-2018 CLM_2002 63870c90e161d68a5ffda7639807f198 349 SUPERFAMILY SSF52021 1 146 4.45E-56 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2002 63870c90e161d68a5ffda7639807f198 349 SMART SM01097 1 131 1.5E-85 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2002 63870c90e161d68a5ffda7639807f198 349 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 3 130 1.4E-52 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2002 63870c90e161d68a5ffda7639807f198 349 SUPERFAMILY SSF52317 145 348 1.02E-60 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2002 63870c90e161d68a5ffda7639807f198 349 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 3 346 1.4E-145 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 Pfam PF04397 LytTr DNA-binding domain 150 240 1.2E-16 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 SMART SM00850 148 241 4.2E-12 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 SMART SM00448 3 122 5.9E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 Gene3D G3DSA:2.40.50.1020 138 245 3.6E-15 T 13-10-2018 CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 SUPERFAMILY SSF52172 3 127 6.55E-20 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 Gene3D G3DSA:3.40.50.2300 1 137 1.2E-24 T 13-10-2018 CLM_0367 367ee5a35e963eb6e95d24ded16ad457 246 Pfam PF00072 Response regulator receiver domain 5 120 1.7E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0855 16fec9ce554500419fdca298da84b04d 658 SUPERFAMILY SSF52540 1 371 1.45E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0855 16fec9ce554500419fdca298da84b04d 658 Pfam PF13175 AAA ATPase domain 18 369 6.2E-19 T 13-10-2018 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Pfam PF01300 Telomere recombination 252 427 2.5E-52 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Gene3D G3DSA:3.30.110.120 296 414 6.1E-139 T 13-10-2018 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Gene3D G3DSA:3.30.420.360 428 789 4.8E-125 T 13-10-2018 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 PIRSF PIRSF006256 10 801 4.9E-268 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 207 789 2.1E-159 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Pfam PF07503 HypF finger 117 150 1.3E-12 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Pfam PF07503 HypF finger 167 199 1.1E-12 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 SUPERFAMILY SSF55821 187 433 2.44E-43 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Pfam PF00708 Acylphosphatase 17 98 3.8E-19 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 ProSitePatterns PS00150 Acylphosphatase signature 1. 19 29 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Gene3D G3DSA:3.30.420.350 523 777 4.8E-125 T 13-10-2018 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 SUPERFAMILY SSF54975 11 99 1.7E-22 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CLM_1993 b04b1fadbd434441cea9a3bc7c4ef782 812 Gene3D G3DSA:3.90.870.50 17 405 6.1E-139 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 SUPERFAMILY SSF51971 367 459 4.12E-6 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 SUPERFAMILY SSF46548 9 149 1.62E-34 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_1886 719d599495014f2d4c9063922180acbe 460 SUPERFAMILY SSF51971 138 391 8.24E-69 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 139 447 3.5E-36 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1886 719d599495014f2d4c9063922180acbe 460 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 17 127 9.0E-45 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CLM_1886 719d599495014f2d4c9063922180acbe 460 Gene3D G3DSA:1.10.1060.10 2 138 1.4E-42 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_1886 719d599495014f2d4c9063922180acbe 460 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 14 458 1.6E-178 T 13-10-2018 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 CLM_1886 719d599495014f2d4c9063922180acbe 460 PRINTS PR00419 Adrenodoxin reductase family signature 140 162 6.4E-19 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 PRINTS PR00419 Adrenodoxin reductase family signature 206 216 6.4E-19 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 PRINTS PR00419 Adrenodoxin reductase family signature 282 296 6.4E-19 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 PRINTS PR00419 Adrenodoxin reductase family signature 163 176 6.4E-19 T 13-10-2018 CLM_1886 719d599495014f2d4c9063922180acbe 460 Gene3D G3DSA:3.50.50.60 278 460 1.1E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1886 719d599495014f2d4c9063922180acbe 460 Gene3D G3DSA:3.50.50.60 139 277 3.5E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2909 be2d5f57ab616f63c0798a93ff32084a 1621 Pfam PF01467 Cytidylyltransferase-like 922 1082 3.1E-6 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CLM_2909 be2d5f57ab616f63c0798a93ff32084a 1621 SUPERFAMILY SSF52374 919 1113 1.06E-19 T 13-10-2018 CLM_2909 be2d5f57ab616f63c0798a93ff32084a 1621 SUPERFAMILY SSF48371 393 854 1.61E-13 T 13-10-2018 IPR016024 Armadillo-type fold CLM_2909 be2d5f57ab616f63c0798a93ff32084a 1621 SUPERFAMILY SSF109604 163 314 7.18E-10 T 13-10-2018 CLM_2909 be2d5f57ab616f63c0798a93ff32084a 1621 Gene3D G3DSA:3.40.50.620 917 1115 5.6E-24 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 Gene3D G3DSA:1.10.10.60 104 154 5.4E-17 T 13-10-2018 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 Pfam PF12833 Helix-turn-helix domain 129 206 2.3E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 189 205 4.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 174 189 4.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 SMART SM00342 122 205 3.0E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 SUPERFAMILY SSF46689 158 208 3.94E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 159 201 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 SUPERFAMILY SSF46689 105 154 2.4E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1200 3cba3f0b57d84d99eb4158527c6ef3dc 212 Gene3D G3DSA:1.10.10.60 155 208 3.3E-19 T 13-10-2018 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 SUPERFAMILY SSF53738 3 181 5.89E-47 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Gene3D G3DSA:3.40.120.10 257 340 4.2E-70 T 13-10-2018 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 SUPERFAMILY SSF55957 358 448 1.31E-20 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 254 1.1E-16 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 447 44.147 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 368 1.1E-34 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 445 5.2E-173 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Gene3D G3DSA:3.40.120.10 174 363 4.2E-70 T 13-10-2018 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.0E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.0E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.0E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 SUPERFAMILY SSF53738 258 365 1.06E-31 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Gene3D G3DSA:3.40.120.10 3 154 2.9E-53 T 13-10-2018 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 374 445 1.3E-14 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 SUPERFAMILY SSF53738 158 257 3.81E-28 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Gene3D G3DSA:3.30.310.50 371 449 2.2E-25 T 13-10-2018 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_3886 5b0a0b55e0d5dc53137e8b20bffb4729 449 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 133 5.8E-44 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_0633 c46898b71617c73500c766525054cf83 872 TIGRFAM TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 52 868 2.2E-212 T 13-10-2018 IPR005782 P-type ATPase, subfamily IIA, SERCA-type GO:0005388|GO:0006816|GO:0016021 Reactome: R-HSA-1912420|Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 SUPERFAMILY SSF81660 331 511 1.73E-52 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 Pfam PF00690 Cation transporter/ATPase, N-terminus 2 70 9.6E-22 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 160 174 1.1E-42 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 518 1.1E-42 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 539 1.1E-42 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 609 628 1.1E-42 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 645 1.1E-42 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 324 338 1.1E-42 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 Gene3D G3DSA:3.40.50.1000 321 654 0.0 T 13-10-2018 IPR023214 HAD superfamily CLM_0633 c46898b71617c73500c766525054cf83 872 Gene3D G3DSA:2.70.150.10 14 227 0.0 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 SMART SM00831 1 75 3.5E-29 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 TIGRFAM TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 11 864 1.9E-161 T 13-10-2018 IPR006408 P-type ATPase, subfamily IIB GO:0005388|GO:0005524|GO:0016020|GO:0070588 Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 Gene3D G3DSA:1.20.1110.10 53 865 0.0 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 Pfam PF00122 E1-E2 ATPase 110 303 1.7E-53 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 SUPERFAMILY SSF81665 2 870 3.01E-139 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 Pfam PF00689 Cation transporting ATPase, C-terminus 693 866 2.2E-50 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 215 351 2.8E-28 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 82 176 1.5E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 580 693 1.3E-36 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 SUPERFAMILY SSF81653 113 224 1.83E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 Pfam PF00702 haloacid dehalogenase-like hydrolase 320 623 1.1E-21 T 13-10-2018 CLM_0633 c46898b71617c73500c766525054cf83 872 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 326 332 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 666 5.7E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 581 597 5.7E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 467 485 5.7E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 609 625 5.7E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 Gene3D G3DSA:3.40.1110.10 334 514 0.0 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_0633 c46898b71617c73500c766525054cf83 872 SUPERFAMILY SSF56784 322 713 3.46E-62 T 13-10-2018 IPR036412 HAD-like superfamily CLM_0633 c46898b71617c73500c766525054cf83 872 TIGRFAM TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type 7 871 5.8E-243 T 13-10-2018 IPR006413 P-type ATPase, subfamily IIA, PMR1-type GO:0005388|GO:0006816|GO:0016021 Reactome: R-HSA-936837 CLM_1311 3fae5f69698033cfb05535c412f6da83 139 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 10 123 1.1E-26 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CLM_1311 3fae5f69698033cfb05535c412f6da83 139 PIRSF PIRSF003230 2 139 3.6E-34 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CLM_1311 3fae5f69698033cfb05535c412f6da83 139 SUPERFAMILY SSF54637 2 131 9.89E-35 T 13-10-2018 IPR029069 HotDog domain superfamily CLM_1311 3fae5f69698033cfb05535c412f6da83 139 Gene3D G3DSA:3.10.129.10 5 138 5.3E-34 T 13-10-2018 CLM_1311 3fae5f69698033cfb05535c412f6da83 139 Pfam PF13279 Thioesterase-like superfamily 13 117 4.6E-11 T 13-10-2018 CLM_3105 4f1efced737c69c4a05be8055813279b 320 Pfam PF00700 Bacterial flagellin C-terminal helical region 237 319 1.3E-8 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3105 4f1efced737c69c4a05be8055813279b 320 Gene3D G3DSA:1.20.1330.10 40 266 1.2E-42 T 13-10-2018 CLM_3105 4f1efced737c69c4a05be8055813279b 320 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 138 1.3E-21 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3105 4f1efced737c69c4a05be8055813279b 320 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 176 2.1E-43 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 CLM_3105 4f1efced737c69c4a05be8055813279b 320 SUPERFAMILY SSF64518 2 320 5.49E-63 T 13-10-2018 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 Gene3D G3DSA:3.40.50.150 9 235 5.0E-41 T 13-10-2018 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 PIRSF PIRSF000398 3 267 9.4E-36 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 177 189 3.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 11 27 3.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 55 68 3.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 32 46 3.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 11 237 3.7E-23 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 Gene3D G3DSA:1.10.1020.10 62 157 5.0E-41 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 CLM_2538 325fdbe89bab57b790250635a67cad0b 275 SUPERFAMILY SSF53335 7 263 2.91E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0790 b0af4287b49c2546dea82703bf996157 154 SUPERFAMILY SSF46557 2 76 5.89E-20 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CLM_0790 b0af4287b49c2546dea82703bf996157 154 SUPERFAMILY SSF54534 80 153 7.06E-15 T 13-10-2018 CLM_0790 b0af4287b49c2546dea82703bf996157 154 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 1.7E-19 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CLM_0790 b0af4287b49c2546dea82703bf996157 154 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 153 5.3E-42 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 CLM_0790 b0af4287b49c2546dea82703bf996157 154 Gene3D G3DSA:3.10.50.30 76 154 3.8E-16 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CLM_0790 b0af4287b49c2546dea82703bf996157 154 PIRSF PIRSF006092 1 154 5.4E-47 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CLM_0790 b0af4287b49c2546dea82703bf996157 154 Hamap MF_00105 Transcription elongation factor GreA [greA]. 1 154 27.964 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CLM_0790 b0af4287b49c2546dea82703bf996157 154 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 153 3.5E-19 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CLM_0790 b0af4287b49c2546dea82703bf996157 154 Gene3D G3DSA:1.10.287.180 1 75 8.3E-23 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CLM_3982 df98be9711ffb1ad5fcb99a0678cff29 175 PIRSF PIRSF015034 1 175 1.2E-60 T 13-10-2018 IPR025542 YacH protein CLM_3982 df98be9711ffb1ad5fcb99a0678cff29 175 SUPERFAMILY SSF46600 137 170 6.02E-6 T 13-10-2018 IPR036876 UVR domain superfamily CLM_3982 df98be9711ffb1ad5fcb99a0678cff29 175 Pfam PF02151 UvrB/uvrC motif 137 170 1.0E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 SUPERFAMILY SSF52954 282 403 6.49E-32 T 13-10-2018 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Gene3D G3DSA:3.30.930.10 7 286 2.8E-104 T 13-10-2018 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Gene3D G3DSA:3.30.110.30 405 478 9.5E-25 T 13-10-2018 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 SUPERFAMILY SSF64586 406 478 1.84E-23 T 13-10-2018 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 SUPERFAMILY SSF55681 16 279 2.24E-76 T 13-10-2018 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 411 478 2.7E-25 T 13-10-2018 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Gene3D G3DSA:3.40.50.800 287 387 1.6E-30 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Hamap MF_01571 Proline--tRNA ligase [proS]. 11 478 44.052 T 13-10-2018 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 TIGRFAM TIGR00408 proS_fam_I: proline--tRNA ligase 14 478 1.1E-183 T 13-10-2018 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 104 274 1.9E-19 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 Pfam PF03129 Anticodon binding domain 293 384 6.4E-21 T 13-10-2018 IPR004154 Anticodon-binding CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 SMART SM00946 411 478 5.5E-34 T 13-10-2018 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 PRINTS PR01046 Prolyl-tRNA synthetase signature 69 87 2.3E-9 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 PRINTS PR01046 Prolyl-tRNA synthetase signature 140 148 2.3E-9 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 PRINTS PR01046 Prolyl-tRNA synthetase signature 149 160 2.3E-9 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CLM_3789 5c5fce740559d8ceb2686faec9d3b3a7 478 PRINTS PR01046 Prolyl-tRNA synthetase signature 110 121 2.3E-9 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CLM_3585 800d56d0da6a54924027b958edbba55c 391 SMART SM00460 304 366 2.3E-19 T 13-10-2018 IPR002931 Transglutaminase-like CLM_3585 800d56d0da6a54924027b958edbba55c 391 Pfam PF01841 Transglutaminase-like superfamily 253 364 1.2E-21 T 13-10-2018 IPR002931 Transglutaminase-like CLM_3585 800d56d0da6a54924027b958edbba55c 391 Gene3D G3DSA:3.10.620.30 203 381 1.3E-29 T 13-10-2018 CLM_3585 800d56d0da6a54924027b958edbba55c 391 SUPERFAMILY SSF54001 171 366 4.05E-32 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 Gene3D G3DSA:3.20.20.450 593 843 2.9E-95 T 13-10-2018 IPR035919 EAL domain superfamily CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 SMART SM00267 412 581 2.1E-51 T 13-10-2018 IPR000160 GGDEF domain CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 Pfam PF05228 CHASE4 domain 4 151 1.3E-27 T 13-10-2018 IPR007892 CHASE4 CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 422 580 2.4E-40 T 13-10-2018 IPR000160 GGDEF domain CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 Gene3D G3DSA:3.30.70.270 417 592 4.9E-56 T 13-10-2018 CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 Pfam PF00563 EAL domain 597 831 8.1E-76 T 13-10-2018 IPR001633 EAL domain CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 SUPERFAMILY SSF55073 428 582 5.41E-43 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 Pfam PF00990 Diguanylate cyclase, GGDEF domain 423 575 3.8E-43 T 13-10-2018 IPR000160 GGDEF domain CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 SMART SM00304 234 287 0.0087 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 Gene3D G3DSA:3.30.450.20 316 412 5.9E-6 T 13-10-2018 CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 SMART SM00052 591 836 1.1E-105 T 13-10-2018 IPR001633 EAL domain CLM_0425 1f8252c6622b1b7f350ee7f13637b8f1 843 SUPERFAMILY SSF141868 596 840 8.89E-88 T 13-10-2018 IPR035919 EAL domain superfamily CLM_0835 89deb3fe5152f3535d2a7e91edccfb4f 243 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0835 89deb3fe5152f3535d2a7e91edccfb4f 243 SUPERFAMILY SSF52540 3 218 1.21E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0835 89deb3fe5152f3535d2a7e91edccfb4f 243 SMART SM00382 28 206 5.4E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0835 89deb3fe5152f3535d2a7e91edccfb4f 243 Pfam PF00005 ABC transporter 20 157 2.5E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0835 89deb3fe5152f3535d2a7e91edccfb4f 243 Gene3D G3DSA:3.40.50.300 1 232 1.7E-57 T 13-10-2018 CLM_2856 9e60ef49c88ca2ed0bd85bd7d05b7db2 276 Gene3D G3DSA:3.90.320.10 9 276 1.2E-87 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CLM_2856 9e60ef49c88ca2ed0bd85bd7d05b7db2 276 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 28 264 3.0E-86 T 13-10-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 SUPERFAMILY SSF55920 1 247 7.33E-87 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 Pfam PF00557 Metallopeptidase family M24 12 238 7.7E-50 T 13-10-2018 IPR000994 Peptidase M24 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 1.0E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 1.0E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 1.0E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 1.0E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 Gene3D G3DSA:3.90.230.10 1 248 3.4E-103 T 13-10-2018 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 5.7E-98 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 166 184 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_3926 b76c74782cddc6ceb4fc6dc6d667c2f1 249 Hamap MF_01974 Methionine aminopeptidase [map]. 2 249 41.21 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 428 207.633 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 SMART SM00788 3 424 9.6E-287 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 SUPERFAMILY SSF52540 1 426 2.55E-175 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 Gene3D G3DSA:3.40.440.10 5 260 2.2E-107 T 13-10-2018 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 425 5.5E-175 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 Gene3D G3DSA:3.90.170.10 267 428 3.6E-68 T 13-10-2018 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 Pfam PF00709 Adenylosuccinate synthetase 5 423 4.8E-187 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CLM_4121 9e58b8bc0e19d1614aaacdbea2a73f8e 428 Gene3D G3DSA:1.10.300.10 102 201 2.2E-107 T 13-10-2018 CLM_3647 4cf975e5cabdaab116366be59dbf8dca 191 SUPERFAMILY SSF53271 9 149 8.8E-39 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3647 4cf975e5cabdaab116366be59dbf8dca 191 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 5 188 1.6E-70 T 13-10-2018 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_3647 4cf975e5cabdaab116366be59dbf8dca 191 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 191 25.348 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3647 4cf975e5cabdaab116366be59dbf8dca 191 Gene3D G3DSA:3.40.50.2020 4 191 6.7E-57 T 13-10-2018 CLM_3647 4cf975e5cabdaab116366be59dbf8dca 191 Pfam PF00156 Phosphoribosyl transferase domain 42 164 3.4E-13 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 SUPERFAMILY SSF81665 22 878 4.45E-104 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 283 302 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 834 855 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 266 282 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 784 805 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 729 742 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 749 765 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 387 400 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 679 694 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 PRINTS PR01836 Magnesium-transporting ATPase signature 697 708 1.6E-79 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:3.40.50.1000 529 665 4.1E-83 T 13-10-2018 IPR023214 HAD superfamily CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 SUPERFAMILY SSF81653 144 252 1.57E-27 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:3.40.1110.10 363 374 2.3E-85 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:2.70.150.10 40 255 2.3E-85 T 13-10-2018 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Pfam PF00122 E1-E2 ATPase 140 333 3.3E-46 T 13-10-2018 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 355 361 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 14 880 0.0 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Pfam PF00690 Cation transporter/ATPase, N-terminus 25 90 2.7E-18 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 246 388 4.6E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 588 710 4.4E-32 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 113 207 2.6E-18 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Pfam PF00702 haloacid dehalogenase-like hydrolase 349 635 2.3E-20 T 13-10-2018 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:1.20.1110.10 666 782 4.1E-83 T 13-10-2018 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:3.40.1110.10 412 528 4.1E-83 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:3.40.50.1000 350 362 2.3E-85 T 13-10-2018 IPR023214 HAD superfamily CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 SUPERFAMILY SSF81660 320 525 9.16E-41 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 Gene3D G3DSA:1.20.1110.10 73 349 2.3E-85 T 13-10-2018 CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 SUPERFAMILY SSF56784 341 661 7.05E-40 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3266 a0409f88d8f254f99ae120fecc002f91 881 SMART SM00831 22 95 3.7E-15 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Gene3D G3DSA:3.40.1360.10 232 354 1.1E-38 T 13-10-2018 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 PIRSF PIRSF002811 1 586 4.2E-164 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Pfam PF13155 Toprim-like 252 336 6.1E-21 T 13-10-2018 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Pfam PF01807 CHC2 zinc finger 3 98 3.1E-36 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 SUPERFAMILY SSF56731 109 411 2.75E-97 T 13-10-2018 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Gene3D G3DSA:3.90.580.10 1 100 1.1E-36 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 SUPERFAMILY SSF48024 443 499 6.8E-6 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Hamap MF_00974 DNA primase [dnaG]. 1 581 27.626 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 SMART SM00400 33 87 2.7E-33 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 TIGRFAM TIGR01391 dnaG: DNA primase 2 404 1.2E-139 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 SMART SM00493 249 320 3.5E-22 T 13-10-2018 IPR006171 TOPRIM domain CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Pfam PF08275 DNA primase catalytic core, N-terminal domain 122 241 2.0E-40 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Gene3D G3DSA:3.90.980.10 102 231 9.7E-43 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 Pfam PF10410 DnaB-helicase binding domain of primase 356 408 2.1E-7 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 CLM_3333 4ce9cc2f7c8f023a8d85a3f94f64c2b2 590 SUPERFAMILY SSF57783 2 96 8.67E-32 T 13-10-2018 CLM_3801 a6d5c31ad2db72a960caa00ba71dc765 331 Pfam PF03984 Repeat of unknown function (DUF346) 182 216 9.9E-7 T 13-10-2018 IPR007132 Protein of unknown function DUF346 CLM_3801 a6d5c31ad2db72a960caa00ba71dc765 331 Pfam PF03984 Repeat of unknown function (DUF346) 226 260 4.7E-8 T 13-10-2018 IPR007132 Protein of unknown function DUF346 CLM_3801 a6d5c31ad2db72a960caa00ba71dc765 331 Pfam PF03984 Repeat of unknown function (DUF346) 136 171 2.1E-7 T 13-10-2018 IPR007132 Protein of unknown function DUF346 CLM_3801 a6d5c31ad2db72a960caa00ba71dc765 331 Gene3D G3DSA:2.120.10.70 76 319 2.1E-11 T 13-10-2018 CLM_3801 a6d5c31ad2db72a960caa00ba71dc765 331 SUPERFAMILY SSF89372 61 164 1.57E-24 T 13-10-2018 CLM_3801 a6d5c31ad2db72a960caa00ba71dc765 331 SUPERFAMILY SSF89372 155 330 4.58E-42 T 13-10-2018 CLM_0397 fc0d05be63c271d20c5dd1240de57a6d 183 Pfam PF17248 Family of unknown function (DUF5317) 21 169 3.6E-24 T 13-10-2018 IPR035168 Protein of unknown function DUF5317 CLM_3981 dda0f8b0e07606980ccc7b6b6877b54d 347 ProSitePatterns PS00112 Phosphagen kinase active site signature. 156 162 - T 13-10-2018 IPR022415 ATP:guanido phosphotransferase active site GO:0016301|GO:0016772 Reactome: R-HSA-71288 CLM_3981 dda0f8b0e07606980ccc7b6b6877b54d 347 SUPERFAMILY SSF55931 9 257 2.44E-81 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CLM_3981 dda0f8b0e07606980ccc7b6b6877b54d 347 Hamap MF_00602 Protein-arginine kinase [mcsB]. 3 339 34.555 T 13-10-2018 IPR023660 Protein arginine kinase GO:0016775 CLM_3981 dda0f8b0e07606980ccc7b6b6877b54d 347 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 44 241 5.1E-72 T 13-10-2018 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 CLM_3981 dda0f8b0e07606980ccc7b6b6877b54d 347 Gene3D G3DSA:3.30.590.10 2 251 1.2E-70 T 13-10-2018 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 SUPERFAMILY SSF116734 539 723 3.43E-5 T 13-10-2018 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 Pfam PF07669 Eco57I restriction-modification methylase 371 483 4.9E-9 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 372 384 1.5E-16 T 13-10-2018 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 178 194 1.5E-16 T 13-10-2018 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 412 436 1.5E-16 T 13-10-2018 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 208 222 1.5E-16 T 13-10-2018 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 375 381 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 SUPERFAMILY SSF53335 91 512 1.18E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1425 01390fc1c7df78e202da4be2f7dbddc5 741 Pfam PF12950 TaqI-like C-terminal specificity domain 564 681 1.3E-26 T 13-10-2018 IPR025931 TaqI-like C-terminal specificity domain CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 Gene3D G3DSA:1.10.10.10 5 126 2.0E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 71 2.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 Pfam PF02080 TrkA-C domain 133 203 1.4E-16 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 SMART SM00345 12 71 3.4E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 SUPERFAMILY SSF46785 4 83 2.06E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 SUPERFAMILY SSF116726 123 203 4.05E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_0605 8a8ed35bedd228d9e67c031b708d7f87 206 Gene3D G3DSA:3.30.70.1450 132 204 1.5E-17 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 SUPERFAMILY SSF47384 110 193 1.73E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 Gene3D G3DSA:3.30.565.10 191 345 1.2E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 SMART SM00387 237 347 9.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 128 192 5.4E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 SUPERFAMILY SSF55874 182 343 8.51E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 Gene3D G3DSA:1.10.287.130 72 190 2.3E-12 T 13-10-2018 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 274 288 9.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 344 9.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 325 9.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 302 9.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 239 343 5.1E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0826 7c673d4ed23714282b06760b6cb7274f 349 SMART SM00388 126 192 2.8E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 Pfam PF01546 Peptidase family M20/M25/M40 73 482 1.3E-15 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PIRSF PIRSF016599 2 487 7.7E-173 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 Gene3D G3DSA:3.40.630.10 363 486 2.8E-23 T 13-10-2018 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 SUPERFAMILY SSF53187 12 484 1.2E-52 T 13-10-2018 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 Gene3D G3DSA:3.40.630.10 3 240 5.6E-59 T 13-10-2018 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 207 224 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 160 178 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 102 120 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 252 271 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 81 100 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 430 446 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 452 474 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 PRINTS PR00934 X-His dipeptidase (M25) signature 136 153 1.4E-47 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 Pfam PF07687 Peptidase dimerisation domain 213 290 3.6E-5 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_1562 ebd2e04f4325a7a9a4be70e675066122 487 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 11 484 3.0E-172 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2813 15800664c9bed5b51448a5fe45c789ca 72 SUPERFAMILY SSF63562 5 69 3.66E-24 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CLM_2813 15800664c9bed5b51448a5fe45c789ca 72 SMART SM01409 12 64 4.4E-15 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CLM_2813 15800664c9bed5b51448a5fe45c789ca 72 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 5 62 1.0E-14 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_2813 15800664c9bed5b51448a5fe45c789ca 72 Gene3D G3DSA:3.90.940.10 5 72 7.3E-23 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CLM_2813 15800664c9bed5b51448a5fe45c789ca 72 Pfam PF01192 RNA polymerase Rpb6 13 64 6.6E-16 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CLM_2813 15800664c9bed5b51448a5fe45c789ca 72 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 5 65 15.571 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Gene3D G3DSA:3.30.360.90 364 436 2.1E-26 T 13-10-2018 CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Gene3D G3DSA:3.30.160.610 93 182 4.0E-29 T 13-10-2018 CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 ProDom PD032508 PHAGE-LIKE PBSX XKDK ELEMENT PHAGE LIN1278 SHEATH YQBL RELATED TAIL 311 436 9.0E-22 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Pfam PF17481 Phage tail sheath protein beta-sandwich domain 93 180 5.5E-16 T 13-10-2018 IPR035326 Phage tail sheath protein, beta-sandwich domain CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Gene3D G3DSA:3.30.1490.360 25 92 2.7E-24 T 13-10-2018 CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Gene3D G3DSA:1.10.10.2290 248 326 8.1E-58 T 13-10-2018 CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Gene3D G3DSA:3.40.50.11790 188 354 8.1E-58 T 13-10-2018 CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Pfam PF17482 Phage tail sheath C-terminal domain 335 435 4.8E-24 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CLM_2651 cecc103efdbe24004732b6f9dfbca174 436 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 181 328 5.6E-33 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain CLM_0848 98ea78a95e10745803937e86d95ea815 135 SUPERFAMILY SSF54593 3 130 5.37E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0848 98ea78a95e10745803937e86d95ea815 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 97 5.2E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_0848 98ea78a95e10745803937e86d95ea815 135 Gene3D G3DSA:3.10.180.10 1 134 3.2E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 9.4E-28 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 Gene3D G3DSA:2.40.50.530 1 64 1.1E-24 T 13-10-2018 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.1E-20 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.1E-20 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.1E-20 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 19.936 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 SUPERFAMILY SSF143034 2 64 1.07E-24 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3543 998a0d701676fda7cc58740a95b7fa28 65 Pfam PF01632 Ribosomal protein L35 2 62 3.1E-26 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 Gene3D G3DSA:1.10.8.60 526 600 7.3E-16 T 13-10-2018 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 562 571 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 Pfam PF00158 Sigma-54 interaction domain 354 520 3.8E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 Gene3D G3DSA:3.40.50.300 341 525 1.5E-64 T 13-10-2018 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 SMART SM00382 373 517 8.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 440 455 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 Gene3D G3DSA:1.10.10.10 617 695 1.0E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 377 390 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 Gene3D G3DSA:3.30.450.20 229 330 3.8E-10 T 13-10-2018 CLM_2177 571292b5e2016b103a67ca718fc55ef9 696 SUPERFAMILY SSF52540 352 591 9.46E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3820 6302dc56bc6c2113b05e4cd9bdaff3bf 134 SUPERFAMILY SSF53927 2 132 8.03E-27 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_3820 6302dc56bc6c2113b05e4cd9bdaff3bf 134 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 26 99 1.3E-7 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_3820 6302dc56bc6c2113b05e4cd9bdaff3bf 134 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 95 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_3820 6302dc56bc6c2113b05e4cd9bdaff3bf 134 Gene3D G3DSA:3.40.140.10 3 132 7.0E-32 T 13-10-2018 CLM_0753 e0a0e9ff1cb106fdbc4d329f2c07ce84 396 Gene3D G3DSA:3.30.1330.100 7 116 1.9E-6 T 13-10-2018 CLM_0753 e0a0e9ff1cb106fdbc4d329f2c07ce84 396 SUPERFAMILY SSF144010 6 395 6.54E-49 T 13-10-2018 CLM_0753 e0a0e9ff1cb106fdbc4d329f2c07ce84 396 Pfam PF01996 F420-0:Gamma-glutamyl ligase 11 389 1.8E-85 T 13-10-2018 IPR002847 Coenzyme F420:L-glutamate ligase-like domain KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 Gene3D G3DSA:3.40.50.2000 1 176 1.5E-61 T 13-10-2018 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 Gene3D G3DSA:3.40.50.2000 177 338 1.2E-38 T 13-10-2018 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 4 353 30.417 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 141 9.6E-45 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 2 348 8.4E-85 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 SUPERFAMILY SSF53756 2 351 2.22E-96 T 13-10-2018 CLM_3127 421a0598779815ce5f77ac7acf720a67 354 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 188 345 5.0E-31 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 Gene3D G3DSA:3.40.190.10 167 269 4.8E-35 T 13-10-2018 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 SUPERFAMILY SSF46785 1 112 2.01E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.1E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 Gene3D G3DSA:1.10.10.10 2 90 3.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 Pfam PF03466 LysR substrate binding domain 91 293 1.4E-31 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 Gene3D G3DSA:3.40.190.10 92 293 4.8E-35 T 13-10-2018 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.8E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.8E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.8E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1006 e9d9d9cd3e1f913f420860aa32fd76e5 295 SUPERFAMILY SSF53850 92 293 6.13E-31 T 13-10-2018 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 122 281 7.5E-61 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 SUPERFAMILY SSF53223 1 119 6.81E-27 T 13-10-2018 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 Gene3D G3DSA:3.40.50.10860 7 275 7.9E-94 T 13-10-2018 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 Gene3D G3DSA:3.40.50.720 6 258 7.9E-94 T 13-10-2018 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 282 32.762 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 119 1.9E-29 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 32 54 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 108 129 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 73 100 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 3.1E-56 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CLM_1323 830edf54abc4e4e56c928cca35e18048 282 SUPERFAMILY SSF51735 121 281 1.97E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 Pfam PF02355 Protein export membrane protein 235 399 1.6E-16 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 PRINTS PR00702 Acriflavin resistance protein family signature 249 272 6.3E-9 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 PRINTS PR00702 Acriflavin resistance protein family signature 302 326 6.3E-9 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 PRINTS PR00702 Acriflavin resistance protein family signature 377 400 6.3E-9 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 163 393 1.6E-73 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 134 400 1.2E-102 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 Gene3D G3DSA:3.30.1360.200 82 224 4.5E-31 T 13-10-2018 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 Gene3D G3DSA:1.20.1640.10 225 405 3.2E-11 T 13-10-2018 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 7 413 37.242 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CLM_3468 8a8d3efd66e2718f5207d8c8ebaf7807 422 SUPERFAMILY SSF82866 149 403 2.62E-42 T 13-10-2018 CLM_2151 cef99ac2cd0416a838aad804c66aa3cc 227 Pfam PF00899 ThiF family 4 221 2.2E-46 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CLM_2151 cef99ac2cd0416a838aad804c66aa3cc 227 SUPERFAMILY SSF69572 2 222 1.23E-65 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CLM_2151 cef99ac2cd0416a838aad804c66aa3cc 227 Gene3D G3DSA:3.40.50.720 1 227 2.2E-57 T 13-10-2018 CLM_3871 cfbcf30c0bc4cb64d6bbb4f8406ea8ab 160 SUPERFAMILY SSF47240 10 157 1.79E-27 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_3871 cfbcf30c0bc4cb64d6bbb4f8406ea8ab 160 Pfam PF07875 Coat F domain 98 160 7.3E-24 T 13-10-2018 IPR012851 Spore coat protein CotF-like CLM_3871 cfbcf30c0bc4cb64d6bbb4f8406ea8ab 160 Gene3D G3DSA:1.20.1260.10 7 154 2.7E-10 T 13-10-2018 IPR012347 Ferritin-like CLM_2146 ae7fa67d18094cdba25ffb5fbf59f9c4 247 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2146 ae7fa67d18094cdba25ffb5fbf59f9c4 247 SUPERFAMILY SSF52540 2 228 2.77E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2146 ae7fa67d18094cdba25ffb5fbf59f9c4 247 Gene3D G3DSA:3.40.50.300 1 246 4.1E-63 T 13-10-2018 CLM_2146 ae7fa67d18094cdba25ffb5fbf59f9c4 247 Pfam PF00005 ABC transporter 21 165 4.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2146 ae7fa67d18094cdba25ffb5fbf59f9c4 247 SMART SM00382 29 214 4.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3961 e6be883fecc55dee092604b0990e82d8 174 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 8 173 7.0E-59 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 Gene3D G3DSA:3.30.70.940 1 115 8.1E-42 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 Pfam PF00467 KOW motif 122 148 7.0E-5 T 13-10-2018 IPR005824 KOW CLM_3961 e6be883fecc55dee092604b0990e82d8 174 PRINTS PR00338 Transcription termination factor NUSG signature 131 146 2.5E-17 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 PRINTS PR00338 Transcription termination factor NUSG signature 149 165 2.5E-17 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 PRINTS PR00338 Transcription termination factor NUSG signature 60 72 2.5E-17 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 5 173 23.385 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 ProSitePatterns PS01014 Transcription termination factor nusG signature. 156 165 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CLM_3961 e6be883fecc55dee092604b0990e82d8 174 Gene3D G3DSA:2.30.30.30 116 173 3.6E-24 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 Pfam PF02357 Transcription termination factor nusG 7 108 2.4E-29 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 SMART SM00739 119 146 0.0012 T 13-10-2018 IPR005824 KOW CLM_3961 e6be883fecc55dee092604b0990e82d8 174 SUPERFAMILY SSF82679 6 112 4.32E-39 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 SMART SM00738 5 113 6.3E-43 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CLM_3961 e6be883fecc55dee092604b0990e82d8 174 SUPERFAMILY SSF50104 117 173 5.62E-18 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CLM_3348 89819b866fa675137c093ee9d18d863c 58 Gene3D G3DSA:1.20.5.1150 16 54 2.7E-19 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 23.418 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.5E-14 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.5E-14 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.5E-14 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.5E-14 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 38 8.0E-6 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 Pfam PF01165 Ribosomal protein S21 4 57 3.3E-24 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 58 2.2E-23 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3348 89819b866fa675137c093ee9d18d863c 58 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 13-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3377 f4989feaec448f3649f296d11734dc5c 424 Gene3D G3DSA:1.10.260.150 49 355 1.1E-80 T 13-10-2018 CLM_3377 f4989feaec448f3649f296d11734dc5c 424 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 88 241 1.1E-42 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CLM_3377 f4989feaec448f3649f296d11734dc5c 424 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 334 419 2.0E-12 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain CLM_3377 f4989feaec448f3649f296d11734dc5c 424 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 88 242 6.3E-40 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Gene3D G3DSA:2.40.30.110 285 358 1.1E-28 T 13-10-2018 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 SUPERFAMILY SSF101790 276 366 2.45E-24 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Gene3D G3DSA:3.30.1360.120 7 238 2.0E-93 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Pfam PF01571 Aminomethyltransferase folate-binding domain 13 261 7.3E-98 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Hamap MF_00259 Aminomethyltransferase [gcvT]. 3 365 46.22 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 5 363 7.7E-131 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Gene3D G3DSA:3.30.70.1400 53 139 2.0E-93 T 13-10-2018 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 PIRSF PIRSF006487 1 370 4.3E-108 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 268 358 9.2E-28 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 SUPERFAMILY SSF103025 3 284 6.95E-103 T 13-10-2018 CLM_0815 15edfe73e815f518be7dcd778b68ec32 370 Gene3D G3DSA:4.10.1250.10 240 281 1.5E-17 T 13-10-2018 CLM_3352 432cda194b5038f4fadca6af96dab4cd 312 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 5 304 6.6E-80 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CLM_3352 432cda194b5038f4fadca6af96dab4cd 312 PIRSF PIRSF000401 3 312 5.0E-114 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CLM_3352 432cda194b5038f4fadca6af96dab4cd 312 Gene3D G3DSA:3.40.50.150 118 311 6.5E-63 T 13-10-2018 CLM_3352 432cda194b5038f4fadca6af96dab4cd 312 SUPERFAMILY SSF53335 96 307 5.09E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3352 432cda194b5038f4fadca6af96dab4cd 312 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 4 310 1.7E-104 T 13-10-2018 CLM_3352 432cda194b5038f4fadca6af96dab4cd 312 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 5 311 35.596 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CLM_1483 2f3d796aaba7d9f4efab66ee8b3952cf 223 SUPERFAMILY SSF53187 3 169 8.79E-42 T 13-10-2018 CLM_1483 2f3d796aaba7d9f4efab66ee8b3952cf 223 Gene3D G3DSA:3.40.630.40 1 173 3.4E-56 T 13-10-2018 CLM_1483 2f3d796aaba7d9f4efab66ee8b3952cf 223 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 167 6.6E-31 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_1483 2f3d796aaba7d9f4efab66ee8b3952cf 223 SMART SM00646 65 168 5.0E-15 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 Gene3D G3DSA:1.10.10.410 414 473 5.3E-24 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 Gene3D G3DSA:1.10.150.380 298 411 2.5E-38 T 13-10-2018 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 471 3.0E-179 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 Pfam PF02934 GatB/GatE catalytic domain 5 287 2.6E-115 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 474 39.0 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 SUPERFAMILY SSF89095 295 401 4.32E-33 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 Pfam PF02637 GatB domain 326 471 4.8E-52 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 142 156 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 SUPERFAMILY SSF55931 4 294 1.24E-121 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CLM_3699 8c1064544191e2fc947d0b3bed3a6c0c 476 SMART SM00845 326 473 3.6E-72 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 CLM_0196 a56fbad225a01feec719b2a3b543b695 159 SUPERFAMILY SSF81573 65 122 1.1E-6 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CLM_0196 a56fbad225a01feec719b2a3b543b695 159 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 139 12.631 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CLM_0196 a56fbad225a01feec719b2a3b543b695 159 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 12 157 7.9E-29 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 CLM_0196 a56fbad225a01feec719b2a3b543b695 159 Pfam PF00430 ATP synthase B/B' CF(0) 8 137 8.3E-20 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CLM_1222 f986d3952464e0d4157898348c4ea846 308 Pfam PF04389 Peptidase family M28 102 299 3.8E-37 T 13-10-2018 IPR007484 Peptidase M28 CLM_1222 f986d3952464e0d4157898348c4ea846 308 SUPERFAMILY SSF53187 24 300 9.84E-47 T 13-10-2018 CLM_1222 f986d3952464e0d4157898348c4ea846 308 Gene3D G3DSA:3.40.630.10 2 302 1.3E-53 T 13-10-2018 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 Pfam PF01880 Desulfoferrodoxin 42 123 1.0E-21 T 13-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 Pfam PF06397 Desulfoferrodoxin, N-terminal domain 5 37 4.0E-18 T 13-10-2018 IPR004462 Desulforodoxin domain GO:0005506 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 TIGRFAM TIGR00319 desulf_FeS4: desulfoferrodoxin FeS4 iron-binding domain 2 34 2.5E-17 T 13-10-2018 IPR004462 Desulforodoxin domain GO:0005506 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 SUPERFAMILY SSF49367 40 123 1.96E-33 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 SUPERFAMILY SSF57802 3 37 2.9E-12 T 13-10-2018 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 TIGRFAM TIGR00332 neela_ferrous: desulfoferrodoxin ferrous iron-binding domain 41 123 1.5E-24 T 13-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 Gene3D G3DSA:2.20.28.100 1 39 1.1E-16 T 13-10-2018 IPR038094 Desulforodoxin domain superfamily CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 Gene3D G3DSA:2.60.40.730 40 124 2.1E-33 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 CLM_3769 94ba59f5b5a916c62eff88b5544e5a0e 124 TIGRFAM TIGR00320 dfx_rbo: desulfoferrodoxin 2 123 3.7E-60 T 13-10-2018 IPR004793 Desulfoferrodoxin GO:0005506|GO:0019430 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 SMART SM00342 21 104 2.9E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 SUPERFAMILY SSF46689 57 109 5.82E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 Gene3D G3DSA:3.20.80.10 128 285 4.4E-37 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0929 018104e4b31d164ea4abb5727556fe52 285 Gene3D G3DSA:1.10.10.60 4 57 7.2E-13 T 13-10-2018 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 Pfam PF14526 Integron-associated effector binding protein 131 282 6.9E-23 T 13-10-2018 IPR029441 Integron-associated effector binding protein CLM_0929 018104e4b31d164ea4abb5727556fe52 285 Pfam PF12833 Helix-turn-helix domain 27 105 8.3E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 SMART SM00871 128 283 1.2E-26 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_0929 018104e4b31d164ea4abb5727556fe52 285 SUPERFAMILY SSF46689 7 56 2.37E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 1.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 1.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0929 018104e4b31d164ea4abb5727556fe52 285 SUPERFAMILY SSF55136 131 285 2.28E-24 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0929 018104e4b31d164ea4abb5727556fe52 285 Gene3D G3DSA:1.10.10.60 58 115 3.8E-14 T 13-10-2018 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 Gene3D G3DSA:3.40.630.10 13 461 5.5E-171 T 13-10-2018 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 Pfam PF01546 Peptidase family M20/M25/M40 81 459 7.9E-36 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 SUPERFAMILY SSF53187 3 462 3.14E-66 T 13-10-2018 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 112 151 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 Pfam PF07687 Peptidase dimerisation domain 257 365 1.5E-5 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 SUPERFAMILY SSF55031 182 376 1.45E-51 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 Gene3D G3DSA:3.30.70.360 182 377 5.5E-171 T 13-10-2018 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 Gene3D G3DSA:3.30.70.360 201 288 5.5E-171 T 13-10-2018 CLM_3788 d224e68804b61afb80c3e5ef5efce467 463 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 11 458 8.6E-166 T 13-10-2018 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 SUPERFAMILY SSF53623 101 324 1.57E-71 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 414 4.1E-21 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 SUPERFAMILY SSF53244 327 482 2.22E-46 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 480 35.202 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Pfam PF08245 Mur ligase middle domain 110 306 6.4E-53 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Gene3D G3DSA:3.90.190.20 332 483 3.4E-60 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 SUPERFAMILY SSF63418 1 101 2.22E-22 T 13-10-2018 IPR035911 MurE/MurF, N-terminal CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Gene3D G3DSA:3.40.1190.10 101 331 1.3E-84 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Pfam PF01225 Mur ligase family, catalytic domain 22 98 1.4E-13 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 20 480 4.4E-165 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CLM_1694 2fc8988d5b4347925c9084b97e405e90 483 Gene3D G3DSA:3.40.1390.10 1 100 2.5E-27 T 13-10-2018 CLM_0192 8d995f5530dfdf16d216d3a41d4d182d 385 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 24 367 5.9E-121 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CLM_0192 8d995f5530dfdf16d216d3a41d4d182d 385 SUPERFAMILY SSF53756 3 375 2.46E-134 T 13-10-2018 CLM_0192 8d995f5530dfdf16d216d3a41d4d182d 385 Gene3D G3DSA:3.40.50.2000 7 365 2.1E-145 T 13-10-2018 CLM_0192 8d995f5530dfdf16d216d3a41d4d182d 385 Gene3D G3DSA:3.40.50.2000 192 354 2.1E-145 T 13-10-2018 CLM_0192 8d995f5530dfdf16d216d3a41d4d182d 385 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 5 370 6.7E-159 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Gene3D G3DSA:3.30.420.40 417 560 5.1E-83 T 13-10-2018 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 906 1226 9.5E-57 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 673 891 3.9E-79 T 13-10-2018 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Gene3D G3DSA:3.30.420.40 323 577 5.1E-83 T 13-10-2018 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Gene3D G3DSA:3.30.420.40 98 242 2.9E-69 T 13-10-2018 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 323 577 9.5E-37 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 7 255 6.5E-20 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 SUPERFAMILY SSF53067 322 577 1.73E-54 T 13-10-2018 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 SUPERFAMILY SSF53067 6 255 1.61E-56 T 13-10-2018 CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 323 576 1.4E-39 T 13-10-2018 IPR008275 CoA enzyme activase CLM_1286 4e80cd5216e6e669d9319ae2ee8a52d1 1429 Gene3D G3DSA:3.30.420.40 7 255 2.9E-69 T 13-10-2018 CLM_2344 10de4388a4034c34e698f6cdfdf3c092 212 TIGRFAM TIGR01076 sortase_fam: sortase 86 205 1.6E-27 T 13-10-2018 IPR005754 Sortase family CLM_2344 10de4388a4034c34e698f6cdfdf3c092 212 Gene3D G3DSA:2.40.260.10 71 212 1.0E-40 T 13-10-2018 IPR023365 Sortase domain superfamily CLM_2344 10de4388a4034c34e698f6cdfdf3c092 212 SUPERFAMILY SSF63817 74 210 5.76E-35 T 13-10-2018 IPR023365 Sortase domain superfamily CLM_2344 10de4388a4034c34e698f6cdfdf3c092 212 Pfam PF04203 Sortase family 90 209 3.3E-27 T 13-10-2018 IPR005754 Sortase family CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Gene3D G3DSA:3.40.50.720 11 98 1.6E-32 T 13-10-2018 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 SUPERFAMILY SSF53244 314 456 1.44E-45 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 SUPERFAMILY SSF51984 10 97 1.44E-27 T 13-10-2018 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Pfam PF08245 Mur ligase middle domain 116 294 4.4E-32 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Gene3D G3DSA:3.40.1190.10 99 312 9.9E-67 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 10 458 38.85 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 12 453 1.5E-145 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Gene3D G3DSA:3.90.190.20 313 458 7.1E-57 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Pfam PF01225 Mur ligase family, catalytic domain 12 110 1.9E-25 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 SUPERFAMILY SSF53623 96 312 9.16E-61 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_4040 f795254d884797ebf533190f5ec4ee10 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 398 7.2E-23 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 7 134 2.0E-9 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 147 282 6.8E-18 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 305 553 2.4E-58 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Gene3D G3DSA:3.40.50.11890 1 120 2.1E-14 T 13-10-2018 CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 303 552 1.4E-73 T 13-10-2018 IPR008275 CoA enzyme activase CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Gene3D G3DSA:3.40.50.11900 147 295 2.2E-27 T 13-10-2018 CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Gene3D G3DSA:3.30.420.40 396 536 4.9E-81 T 13-10-2018 CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 Gene3D G3DSA:3.30.420.40 305 553 4.9E-81 T 13-10-2018 CLM_2403 8e9001f7a9a01950b0b091b2bf5c4b45 563 SUPERFAMILY SSF53067 302 555 1.39E-36 T 13-10-2018 CLM_1618 b8d0d40184f4c17a11fddd1cae2ef39f 66 Pfam PF01381 Helix-turn-helix 7 58 9.3E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1618 b8d0d40184f4c17a11fddd1cae2ef39f 66 SUPERFAMILY SSF47413 1 61 5.36E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1618 b8d0d40184f4c17a11fddd1cae2ef39f 66 SMART SM00530 6 60 1.8E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1618 b8d0d40184f4c17a11fddd1cae2ef39f 66 Gene3D G3DSA:1.10.260.40 1 63 1.1E-13 T 13-10-2018 CLM_0096 d1e5da9843599d1aa1f86083150defe2 482 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 5 368 9.1E-68 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CLM_0096 d1e5da9843599d1aa1f86083150defe2 482 Gene3D G3DSA:3.40.640.10 5 283 3.9E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0096 d1e5da9843599d1aa1f86083150defe2 482 Gene3D G3DSA:3.90.1150.10 318 416 2.6E-5 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0096 d1e5da9843599d1aa1f86083150defe2 482 SUPERFAMILY SSF53383 5 390 2.15E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0096 d1e5da9843599d1aa1f86083150defe2 482 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 412 458 5.0E-7 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CLM_0096 d1e5da9843599d1aa1f86083150defe2 482 Gene3D G3DSA:3.90.105.10 421 478 5.7E-21 T 13-10-2018 CLM_1791 5b6b1593e40b97b8bdc8a7414693d958 314 Pfam PF08279 HTH domain 5 53 1.8E-14 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_1791 5b6b1593e40b97b8bdc8a7414693d958 314 SUPERFAMILY SSF46785 2 52 1.5E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1791 5b6b1593e40b97b8bdc8a7414693d958 314 Pfam PF13280 WYL domain 143 306 1.6E-34 T 13-10-2018 IPR026881 WYL domain CLM_1791 5b6b1593e40b97b8bdc8a7414693d958 314 PIRSF PIRSF016838 1 313 3.1E-25 T 13-10-2018 IPR028349 Protein PafC CLM_1791 5b6b1593e40b97b8bdc8a7414693d958 314 Gene3D G3DSA:1.10.10.10 1 62 1.2E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2221 a23379aae86c963f80d8a47368d6cd6d 354 SUPERFAMILY SSF51735 3 204 3.04E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2221 a23379aae86c963f80d8a47368d6cd6d 354 Gene3D G3DSA:3.40.50.720 6 322 5.1E-122 T 13-10-2018 CLM_2221 a23379aae86c963f80d8a47368d6cd6d 354 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 125 5.2E-25 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CLM_2221 a23379aae86c963f80d8a47368d6cd6d 354 Gene3D G3DSA:3.30.360.10 126 345 5.1E-122 T 13-10-2018 CLM_2221 a23379aae86c963f80d8a47368d6cd6d 354 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 243 7.5E-14 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 CLM_0746 91696b8ed5b1309b4f82ad0c95bf64b2 103 Gene3D G3DSA:1.10.340.30 35 99 1.1E-8 T 13-10-2018 CLM_0746 91696b8ed5b1309b4f82ad0c95bf64b2 103 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 43 95 3.3E-5 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CLM_0746 91696b8ed5b1309b4f82ad0c95bf64b2 103 SUPERFAMILY SSF48150 36 95 2.94E-7 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CLM_3983 c7360b5577a377951f0ab5381b9df1e4 154 Gene3D G3DSA:1.10.1200.150 76 154 8.5E-13 T 13-10-2018 CLM_3983 c7360b5577a377951f0ab5381b9df1e4 154 Gene3D G3DSA:1.10.10.1240 5 75 3.5E-32 T 13-10-2018 CLM_3983 c7360b5577a377951f0ab5381b9df1e4 154 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 6 152 5.0E-54 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 CLM_3983 c7360b5577a377951f0ab5381b9df1e4 154 PIRSF PIRSF010607 2 154 1.3E-56 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 SUPERFAMILY SSF52540 296 559 5.33E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Pfam PF00271 Helicase conserved C-terminal domain 609 712 1.4E-8 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Pfam PF04851 Type III restriction enzyme, res subunit 343 502 2.8E-36 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 236 306 1.1E-6 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 SMART SM00487 340 525 1.6E-15 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Gene3D G3DSA:3.90.1570.30 181 326 1.1E-27 T 13-10-2018 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Gene3D G3DSA:3.40.50.300 327 516 1.9E-55 T 13-10-2018 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Pfam PF08463 EcoEI R protein C-terminal 962 1102 8.9E-15 T 13-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 SUPERFAMILY SSF52540 465 784 1.29E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Pfam PF13643 Domain of unknown function (DUF4145) 23 113 9.4E-10 T 13-10-2018 IPR025285 Domain of unknown function DUF4145 CLM_0795 06a92343548b5cd44455a9e5ae7d5c84 1115 Gene3D G3DSA:3.40.50.300 524 747 4.0E-58 T 13-10-2018 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 Gene3D G3DSA:3.40.50.2300 165 297 2.4E-26 T 13-10-2018 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 SMART SM00260 11 144 3.5E-17 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 SUPERFAMILY SSF50341 5 148 1.31E-31 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 Gene3D G3DSA:2.30.30.40 17 138 7.9E-27 T 13-10-2018 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 SMART SM00448 169 292 7.6E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 PIRSF PIRSF002867 1 297 9.8E-93 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 Pfam PF01584 CheW-like domain 16 146 1.6E-25 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 Gene3D G3DSA:2.40.50.180 32 144 7.9E-27 T 13-10-2018 CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 SUPERFAMILY SSF52172 165 296 1.11E-25 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1935 a33212bed5dee0e90c2d7ae64182a0e8 297 Pfam PF00072 Response regulator receiver domain 171 292 2.6E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 8.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 8.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 8.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 8.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 SMART SM00388 247 311 6.5E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 466 8.7E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 Gene3D G3DSA:3.30.565.10 315 467 2.1E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 SUPERFAMILY SSF158472 195 243 3.79E-6 T 13-10-2018 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 SMART SM00304 193 246 1.4E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 310 5.7E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 Gene3D G3DSA:1.20.1480.50 161 252 2.0E-10 T 13-10-2018 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 SUPERFAMILY SSF55874 300 465 6.29E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 SUPERFAMILY SSF47384 232 310 3.14E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 Gene3D G3DSA:1.10.287.130 253 312 4.3E-11 T 13-10-2018 CLM_1198 cd1b7c12672bd31389d0064f098cfb6b 468 SMART SM00387 356 468 4.6E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3719 8427d78c78ec60085d560133a8848be9 398 Pfam PF00037 4Fe-4S binding domain 35 54 5.0E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3719 8427d78c78ec60085d560133a8848be9 398 Pfam PF00037 4Fe-4S binding domain 3 25 4.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3719 8427d78c78ec60085d560133a8848be9 398 Pfam PF01012 Electron transfer flavoprotein domain 71 250 5.0E-51 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_3719 8427d78c78ec60085d560133a8848be9 398 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 38 49 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3719 8427d78c78ec60085d560133a8848be9 398 SUPERFAMILY SSF52402 69 265 2.16E-60 T 13-10-2018 CLM_3719 8427d78c78ec60085d560133a8848be9 398 SUPERFAMILY SSF52467 271 390 2.04E-48 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_3719 8427d78c78ec60085d560133a8848be9 398 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 272 354 4.0E-34 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CLM_3719 8427d78c78ec60085d560133a8848be9 398 Gene3D G3DSA:3.30.70.20 34 68 4.3E-6 T 13-10-2018 CLM_3719 8427d78c78ec60085d560133a8848be9 398 Gene3D G3DSA:3.30.70.20 1 33 1.5E-5 T 13-10-2018 CLM_3719 8427d78c78ec60085d560133a8848be9 398 Gene3D G3DSA:3.40.50.620 69 268 2.9E-83 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3719 8427d78c78ec60085d560133a8848be9 398 Gene3D G3DSA:3.40.50.1220 269 398 3.1E-57 T 13-10-2018 CLM_3719 8427d78c78ec60085d560133a8848be9 398 SUPERFAMILY SSF54862 3 58 3.43E-19 T 13-10-2018 CLM_3719 8427d78c78ec60085d560133a8848be9 398 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 335 361 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CLM_3719 8427d78c78ec60085d560133a8848be9 398 PIRSF PIRSF000089 67 396 4.2E-122 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CLM_3719 8427d78c78ec60085d560133a8848be9 398 SMART SM00893 71 260 7.5E-59 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 219 235 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 302 2.8E-34 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 SUPERFAMILY SSF52283 15 129 2.46E-33 T 13-10-2018 CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 279 4.5E-59 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 Gene3D G3DSA:3.40.50.720 5 295 1.6E-114 T 13-10-2018 CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 SUPERFAMILY SSF51735 101 280 8.62E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1283 92ce650b086972da115ecc80a7f7e2a8 314 Gene3D G3DSA:3.40.50.720 99 282 1.6E-114 T 13-10-2018 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 467 2.2E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 Gene3D G3DSA:1.10.287.130 252 314 3.5E-18 T 13-10-2018 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 SMART SM00388 247 313 2.0E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 SMART SM00387 359 469 6.1E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 448 1.8E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 467 1.8E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 410 1.8E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 424 1.8E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 Gene3D G3DSA:1.20.1480.50 154 250 3.1E-17 T 13-10-2018 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 Pfam PF00672 HAMP domain 194 242 9.6E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 Gene3D G3DSA:3.30.565.10 318 469 4.2E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 313 1.3E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 SUPERFAMILY SSF47384 230 314 9.61E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 SMART SM00304 194 246 4.6E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 SUPERFAMILY SSF158472 194 243 2.62E-11 T 13-10-2018 CLM_4034 d7a2ceb204f9b512406ffe4a859ceb0b 469 SUPERFAMILY SSF55874 302 467 4.58E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2929 18fbeca1a2b3f42d95d35e8584743176 122 Pfam PF05521 Phage head-tail joining protein 9 118 2.8E-23 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CLM_2929 18fbeca1a2b3f42d95d35e8584743176 122 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 8 95 1.3E-13 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CLM_2929 18fbeca1a2b3f42d95d35e8584743176 122 Gene3D G3DSA:2.40.10.270 3 118 2.3E-22 T 13-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily CLM_0221 14d73ce02843d8a16c77394accfef548 835 SMART SM00957 4 382 1.4E-276 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Gene3D G3DSA:3.40.50.300 14 396 0.0 T 13-10-2018 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Gene3D G3DSA:1.10.3060.10 571 774 0.0 T 13-10-2018 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Hamap MF_01382 Protein translocase subunit SecA [secA]. 3 781 19.907 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 ProSitePatterns PS01312 SecA family signature. 480 495 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 CLM_0221 14d73ce02843d8a16c77394accfef548 835 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 26 496 2.6E-232 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 SUPERFAMILY SSF81886 571 823 5.62E-79 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily CLM_0221 14d73ce02843d8a16c77394accfef548 835 Gene3D G3DSA:3.90.1440.10 227 348 0.0 T 13-10-2018 CLM_0221 14d73ce02843d8a16c77394accfef548 835 SUPERFAMILY SSF52540 2 395 2.76E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0221 14d73ce02843d8a16c77394accfef548 835 SUPERFAMILY SSF52540 397 569 1.08E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0221 14d73ce02843d8a16c77394accfef548 835 SMART SM00958 226 338 1.5E-65 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Pfam PF07516 SecA Wing and Scaffold domain 568 778 3.1E-67 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CLM_0221 14d73ce02843d8a16c77394accfef548 835 SUPERFAMILY SSF81767 225 348 1.57E-45 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Gene3D G3DSA:3.40.50.300 397 570 0.0 T 13-10-2018 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Gene3D G3DSA:1.10.1200.230 621 705 0.0 T 13-10-2018 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Pfam PF02810 SEC-C motif 815 833 4.3E-9 T 13-10-2018 IPR004027 SEC-C motif CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 99 113 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 393 406 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 61 85 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 168 188 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 115 125 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 356 373 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 PRINTS PR00906 SecA protein signature 319 341 1.6E-67 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Pfam PF07517 SecA DEAD-like domain 5 382 2.7E-130 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Gene3D G3DSA:3.10.450.50 775 834 1.2E-9 T 13-10-2018 CLM_0221 14d73ce02843d8a16c77394accfef548 835 Pfam PF01043 SecA preprotein cross-linking domain 230 338 8.7E-41 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 CLM_2903 618a9b6adba0e61a3540c0218dbeb6e2 256 Pfam PF06738 Putative threonine/serine exporter 9 248 1.1E-71 T 13-10-2018 IPR010619 Putative threonine/serine exporter CLM_0563 bd5abd6e37ed67ec7bbfb15fabc5617a 273 SUPERFAMILY SSF54001 27 134 5.89E-44 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0563 bd5abd6e37ed67ec7bbfb15fabc5617a 273 Pfam PF00877 NlpC/P60 family 43 132 8.2E-27 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CLM_0563 bd5abd6e37ed67ec7bbfb15fabc5617a 273 SUPERFAMILY SSF47090 145 208 2.54E-6 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_0563 bd5abd6e37ed67ec7bbfb15fabc5617a 273 Gene3D G3DSA:3.90.1720.10 19 139 3.1E-49 T 13-10-2018 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 Pfam PF01195 Peptidyl-tRNA hydrolase 3 183 4.0E-61 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 176 36.436 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 183 7.0E-65 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 Gene3D G3DSA:3.40.50.1470 1 188 1.3E-70 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 CLM_4032 1ccfdabd9560128a4dd162ac6610ab59 189 SUPERFAMILY SSF53178 1 183 1.44E-67 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 CLM_2391 f2a3224ba7f72cff8ea177b8d0c8195c 440 PIRSF PIRSF006060 1 440 2.3E-61 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2391 f2a3224ba7f72cff8ea177b8d0c8195c 440 Pfam PF13520 Amino acid permease 7 411 1.3E-47 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2391 f2a3224ba7f72cff8ea177b8d0c8195c 440 Gene3D G3DSA:1.20.1740.10 1 440 1.8E-66 T 13-10-2018 CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 Gene3D G3DSA:3.30.2130.30 7 250 8.3E-120 T 13-10-2018 CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 13-10-2018 IPR000241 Putative RNA methylase domain CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 SUPERFAMILY SSF53335 140 370 1.2E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 Pfam PF01170 Putative RNA methylase family UPF0020 162 366 2.4E-56 T 13-10-2018 IPR000241 Putative RNA methylase domain CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 SMART SM00981 57 154 8.2E-7 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 Pfam PF02926 THUMP domain 14 153 3.4E-9 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 298 304 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CLM_1719 cfb5abfe1380fdf13ed482bf766819aa 380 Gene3D G3DSA:3.40.50.150 169 363 8.3E-120 T 13-10-2018 CLM_1101 0371ef94fe5d8a61df47d82959300f60 255 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 252 8.8E-56 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 CLM_1101 0371ef94fe5d8a61df47d82959300f60 255 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 250 9.0E-65 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 CLM_2708 c60de2b4876fac6cde16e374fe6813f7 289 Gene3D G3DSA:3.30.2350.10 1 235 3.1E-93 T 13-10-2018 CLM_2708 c60de2b4876fac6cde16e374fe6813f7 289 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 288 18.891 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2708 c60de2b4876fac6cde16e374fe6813f7 289 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 171 225 2.1E-10 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 CLM_2708 c60de2b4876fac6cde16e374fe6813f7 289 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 209 1.6E-77 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2708 c60de2b4876fac6cde16e374fe6813f7 289 SUPERFAMILY SSF55120 1 225 4.32E-83 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2708 c60de2b4876fac6cde16e374fe6813f7 289 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 170 6.7E-60 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 PIRSF PIRSF000370 1 220 1.6E-55 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 217 36.681 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 Pfam PF04055 Radical SAM superfamily 27 195 5.8E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 TIGRFAM TIGR03963 rSAM_QueE_Clost: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 3 221 7.7E-113 T 13-10-2018 IPR023868 7-carboxy-7-deazaguanine synthase, Clostridial form KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 Pfam PF13353 4Fe-4S single cluster domain 12 108 1.9E-14 T 13-10-2018 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 Gene3D G3DSA:3.20.20.70 2 214 2.4E-37 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1796 eead4f39028f1e8ecbc67999d41efbb2 221 SUPERFAMILY SSF102114 17 203 6.54E-19 T 13-10-2018 CLM_3288 4ff6a554c1d8babbd6c7fb2bd24fd458 282 TIGRFAM TIGR03309 matur_yqeB: selenium-dependent molybdenum hydroxylase system protein, YqeB family 10 265 1.1E-124 T 13-10-2018 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family CLM_3293 45e3bb546b33bb9b41fb9c89c435be57 288 Pfam PF01497 Periplasmic binding protein 40 222 2.3E-17 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_3293 45e3bb546b33bb9b41fb9c89c435be57 288 Gene3D G3DSA:3.40.50.1980 133 230 7.9E-62 T 13-10-2018 CLM_3293 45e3bb546b33bb9b41fb9c89c435be57 288 SUPERFAMILY SSF53807 9 284 6.67E-48 T 13-10-2018 CLM_3293 45e3bb546b33bb9b41fb9c89c435be57 288 Gene3D G3DSA:3.40.50.1980 1 103 8.3E-27 T 13-10-2018 CLM_3293 45e3bb546b33bb9b41fb9c89c435be57 288 Gene3D G3DSA:1.20.58.2180 108 277 7.9E-62 T 13-10-2018 CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 440 1.2E-91 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 PIRSF PIRSF002741 1 527 5.7E-166 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 Gene3D G3DSA:3.40.190.10 56 508 1.1E-163 T 13-10-2018 CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 Gene3D G3DSA:3.90.76.10 70 184 1.1E-163 T 13-10-2018 CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 Gene3D G3DSA:3.10.105.10 278 493 1.1E-163 T 13-10-2018 CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 87 109 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CLM_1530 72eec93f7a8099679b5f7830a5f3ee77 529 SUPERFAMILY SSF53850 40 521 1.99E-133 T 13-10-2018 CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 SUPERFAMILY SSF52540 430 633 2.01E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 Pfam PF00488 MutS domain V 463 620 5.8E-27 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 Gene3D G3DSA:1.10.1420.10 117 203 4.4E-5 T 13-10-2018 CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 PIRSF PIRSF037677 407 634 1.5E-28 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 PIRSF PIRSF037677 119 211 0.0016 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 SUPERFAMILY SSF48334 126 262 6.93E-7 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 SMART SM00534 459 636 2.2E-12 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_1743 4363cd2b958a1bb11c4d0a9f5709d8bb 637 Gene3D G3DSA:3.40.50.300 423 636 6.9E-49 T 13-10-2018 CLM_1389 f4b1f5dc7e2cd04e806060469fda045d 163 Gene3D G3DSA:3.20.90.20 1 159 7.1E-9 T 13-10-2018 IPR038595 LURP-one-related superfamily CLM_1389 f4b1f5dc7e2cd04e806060469fda045d 163 Pfam PF04525 LURP-one-related 3 149 3.3E-15 T 13-10-2018 IPR007612 LURP-one-related CLM_1389 f4b1f5dc7e2cd04e806060469fda045d 163 SUPERFAMILY SSF54518 2 154 2.07E-32 T 13-10-2018 IPR025659 Tubby-like, C-terminal CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 Gene3D G3DSA:1.10.10.60 216 322 4.7E-27 T 13-10-2018 CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 SUPERFAMILY SSF46689 272 321 3.4E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 SMART SM00342 235 318 2.8E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 Pfam PF12833 Helix-turn-helix domain 243 319 4.3E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 287 302 4.4E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 302 318 4.4E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0377 d972b74dc50ba5de4990e3edcb0088a1 323 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 272 314 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_3741 872db013d12a49615bc3a4392afb638a 640 SMART SM00382 28 247 1.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3741 872db013d12a49615bc3a4392afb638a 640 SMART SM00382 357 522 2.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3741 872db013d12a49615bc3a4392afb638a 640 Pfam PF16326 ABC transporter C-terminal domain 575 637 9.7E-8 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CLM_3741 872db013d12a49615bc3a4392afb638a 640 Gene3D G3DSA:3.40.50.300 295 548 2.6E-56 T 13-10-2018 CLM_3741 872db013d12a49615bc3a4392afb638a 640 Pfam PF12848 ABC transporter 234 313 1.4E-21 T 13-10-2018 IPR032781 ABC-transporter extension domain CLM_3741 872db013d12a49615bc3a4392afb638a 640 SUPERFAMILY SSF52540 314 537 3.12E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3741 872db013d12a49615bc3a4392afb638a 640 SUPERFAMILY SSF52540 4 247 3.97E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3741 872db013d12a49615bc3a4392afb638a 640 Pfam PF00005 ABC transporter 349 478 2.0E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3741 872db013d12a49615bc3a4392afb638a 640 Gene3D G3DSA:3.40.50.300 1 289 3.6E-66 T 13-10-2018 CLM_3741 872db013d12a49615bc3a4392afb638a 640 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3741 872db013d12a49615bc3a4392afb638a 640 Pfam PF00005 ABC transporter 19 195 1.9E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 35 45 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PIRSF PIRSF000350 1 461 2.6E-106 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 Gene3D G3DSA:3.50.50.60 151 273 9.9E-119 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 2 460 7.6E-185 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 275 1.8E-35 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 287 309 1.8E-35 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 1.8E-35 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 133 151 1.8E-35 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.8E-35 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 SUPERFAMILY SSF51905 1 316 1.62E-67 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 341 450 1.1E-38 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 Gene3D G3DSA:3.50.50.60 3 329 9.9E-119 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 SUPERFAMILY SSF55424 337 460 6.19E-43 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 322 7.4E-76 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 34 49 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 260 274 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 145 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 302 309 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 337 358 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 2.0E-72 T 13-10-2018 CLM_1875 94200643385fb4156f110f8d51d0bfdd 463 Gene3D G3DSA:3.30.390.30 340 460 3.5E-47 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CLM_2577 087eea389b0d07e59342100bceb2e8ef 453 Pfam PF10544 T5orf172 domain 329 420 3.0E-16 T 13-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding CLM_2577 087eea389b0d07e59342100bceb2e8ef 453 Pfam PF13250 Domain of unknown function (DUF4041) 169 224 5.6E-18 T 13-10-2018 IPR025280 Domain of unknown function DUF4041 CLM_2577 087eea389b0d07e59342100bceb2e8ef 453 SMART SM00974 339 422 3.9E-31 T 13-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 SUPERFAMILY SSF53774 1 328 1.24E-99 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 Gene3D G3DSA:3.40.50.1170 1 206 3.8E-65 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 PIRSF PIRSF001220 1 327 5.8E-93 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 Pfam PF00710 Asparaginase, N-terminal 3 193 2.0E-53 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 PIRSF PIRSF500176 1 328 8.5E-86 T 13-10-2018 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 PRINTS PR00139 Asparaginase/glutaminase family signature 254 272 2.3E-14 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 2.3E-14 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 PRINTS PR00139 Asparaginase/glutaminase family signature 81 99 2.3E-14 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 Gene3D G3DSA:3.40.50.40 207 332 6.3E-35 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 CLM_2817 a09eb4e86b48c5bb8f2a3f05885706db 333 SMART SM00870 3 320 2.0E-137 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 SUPERFAMILY SSF158499 121 187 9.29E-18 T 13-10-2018 IPR034829 DnaD-like domain superfamily CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 PIRSF PIRSF033722 1 328 1.2E-149 T 13-10-2018 IPR017019 Predicted DNA replication protein, bacterial CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 SUPERFAMILY SSF158499 211 274 3.27E-16 T 13-10-2018 IPR034829 DnaD-like domain superfamily CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 Pfam PF07261 Replication initiation and membrane attachment 123 195 2.6E-25 T 13-10-2018 IPR006343 DnaD domain CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 Pfam PF07261 Replication initiation and membrane attachment 223 278 2.3E-14 T 13-10-2018 IPR006343 DnaD domain CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 122 192 3.0E-17 T 13-10-2018 IPR006343 DnaD domain CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 218 278 4.9E-17 T 13-10-2018 IPR006343 DnaD domain CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 Gene3D G3DSA:1.10.10.630 207 279 1.5E-13 T 13-10-2018 IPR034829 DnaD-like domain superfamily CLM_4100 7a592c5830ec1d073cd8aab347d04f89 328 Gene3D G3DSA:1.10.10.630 116 192 1.3E-18 T 13-10-2018 IPR034829 DnaD-like domain superfamily CLM_2467 fbd652af26405fd2f69cab0568f48bd9 227 Pfam PF13500 AAA domain 3 205 6.8E-34 T 13-10-2018 CLM_2467 fbd652af26405fd2f69cab0568f48bd9 227 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 225 24.139 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CLM_2467 fbd652af26405fd2f69cab0568f48bd9 227 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 179 3.3E-38 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CLM_2467 fbd652af26405fd2f69cab0568f48bd9 227 Gene3D G3DSA:3.40.50.300 2 217 1.3E-48 T 13-10-2018 CLM_2467 fbd652af26405fd2f69cab0568f48bd9 227 SUPERFAMILY SSF52540 1 218 8.21E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2467 fbd652af26405fd2f69cab0568f48bd9 227 PIRSF PIRSF006755 1 222 1.3E-51 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CLM_1079 6bb9713fcd63fc7960fe6c6961b413e9 141 Gene3D G3DSA:3.40.630.30 39 141 3.4E-27 T 13-10-2018 CLM_1079 6bb9713fcd63fc7960fe6c6961b413e9 141 SUPERFAMILY SSF55729 1 140 8.67E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1079 6bb9713fcd63fc7960fe6c6961b413e9 141 Pfam PF00583 Acetyltransferase (GNAT) family 45 119 8.9E-12 T 13-10-2018 IPR000182 GNAT domain CLM_3632 2fe1b39217fec24fbc766050f7d88f26 411 Pfam PF01547 Bacterial extracellular solute-binding protein 49 330 6.4E-15 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CLM_3632 2fe1b39217fec24fbc766050f7d88f26 411 Gene3D G3DSA:3.40.190.10 20 411 1.1E-32 T 13-10-2018 CLM_3632 2fe1b39217fec24fbc766050f7d88f26 411 SUPERFAMILY SSF53850 22 407 7.41E-34 T 13-10-2018 CLM_3100 7fefd60a401efdafc452c571c6978a01 129 SUPERFAMILY SSF101116 5 123 2.49E-38 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 CLM_3100 7fefd60a401efdafc452c571c6978a01 129 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 121 9.1E-32 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 CLM_3100 7fefd60a401efdafc452c571c6978a01 129 Pfam PF02561 Flagellar protein FliS 7 120 7.6E-41 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 CLM_3100 7fefd60a401efdafc452c571c6978a01 129 Gene3D G3DSA:1.20.120.340 1 124 2.9E-41 T 13-10-2018 CLM_3100 7fefd60a401efdafc452c571c6978a01 129 PIRSF PIRSF039090 1 129 7.6E-44 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 Pfam PF01514 Secretory protein of YscJ/FliF family 30 217 3.9E-64 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 PRINTS PR01009 Flagellar M-ring protein signature 269 287 7.0E-30 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 PRINTS PR01009 Flagellar M-ring protein signature 150 164 7.0E-30 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 PRINTS PR01009 Flagellar M-ring protein signature 341 365 7.0E-30 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 PRINTS PR01009 Flagellar M-ring protein signature 118 136 7.0E-30 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 PRINTS PR01009 Flagellar M-ring protein signature 193 211 7.0E-30 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 5 524 5.6E-87 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 PIRSF PIRSF004862 1 526 3.9E-131 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 Gene3D G3DSA:3.30.300.30 119 218 1.8E-10 T 13-10-2018 CLM_3028 b6e3607dad6795f4339ecda558cf3334 526 Pfam PF08345 Flagellar M-ring protein C-terminal 256 404 1.9E-33 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF52777 1056 1227 5.0E-29 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.40.50.12780 1967 2355 7.9E-129 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2119 2130 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:1.10.287.490 2651 2712 5.6E-67 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.300.30 2356 2457 1.8E-34 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1355 1502 9.1E-47 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF52777 193 457 5.11E-43 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF52777 9 186 1.33E-41 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF56801 1941 2482 2.22E-155 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 ProSitePatterns PS00012 Phosphopantetheine attachment site. 995 1010 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF52777 1235 1479 3.78E-32 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 492 884 2.4E-135 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2003 2385 4.2E-129 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF56801 430 984 7.2E-155 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.559.10 9 382 8.9E-121 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.40.50.980 629 767 1.2E-39 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.559.10 1039 1217 6.5E-53 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF52777 1704 1950 5.11E-43 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00501 AMP-binding enzyme 471 860 4.3E-101 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00501 AMP-binding enzyme 1982 2361 4.1E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.40.50.1820 2555 2768 5.6E-67 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.559.30 188 447 8.9E-121 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:2.30.38.10 770 850 2.6E-36 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00975 Thioesterase domain 2560 2676 4.1E-19 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.300.30 853 959 1.4E-29 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.559.30 1699 1958 2.0E-120 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00550 Phosphopantetheine attachment site 974 1035 2.3E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00550 Phosphopantetheine attachment site 2470 2534 4.8E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF13193 AMP-binding enzyme C-terminal domain 2369 2442 4.0E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF13193 AMP-binding enzyme C-terminal domain 868 944 1.4E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF52777 1520 1697 1.22E-40 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:1.10.1200.10 2459 2539 7.7E-21 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:1.10.1200.10 960 1038 3.1E-18 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.559.10 1520 1893 2.0E-120 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF47336 965 1035 2.75E-15 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF47336 2462 2535 3.8E-16 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.30.559.30 1218 1484 2.9E-60 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Gene3D G3DSA:3.40.50.980 462 627 4.1E-59 T 13-10-2018 CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00668 Condensation domain 4 451 1.1E-119 T 13-10-2018 IPR001242 Condensation domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00668 Condensation domain 1049 1495 9.9E-106 T 13-10-2018 IPR001242 Condensation domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 Pfam PF00668 Condensation domain 1515 1962 3.9E-119 T 13-10-2018 IPR001242 Condensation domain CLM_0375 1eefb661b5099cba8b724d1708296423 2776 SUPERFAMILY SSF53474 2549 2772 3.31E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0375 1eefb661b5099cba8b724d1708296423 2776 ProSitePatterns PS00455 Putative AMP-binding domain signature. 610 621 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_2825 241b79a639532b7d956d37eeb76365b4 454 Gene3D G3DSA:3.20.20.70 132 330 4.4E-7 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2825 241b79a639532b7d956d37eeb76365b4 454 SUPERFAMILY SSF50156 15 101 1.58E-8 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CLM_2825 241b79a639532b7d956d37eeb76365b4 454 Pfam PF04459 Protein of unknown function (DUF512) 229 437 7.5E-71 T 13-10-2018 IPR007549 Domain of unknown function DUF512 CLM_2825 241b79a639532b7d956d37eeb76365b4 454 SUPERFAMILY SSF102114 89 238 3.73E-10 T 13-10-2018 CLM_2825 241b79a639532b7d956d37eeb76365b4 454 Gene3D G3DSA:2.30.42.10 14 90 2.5E-5 T 13-10-2018 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 Gene3D G3DSA:3.40.50.620 1 329 1.5E-144 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 SUPERFAMILY SSF52374 4 314 2.95E-112 T 13-10-2018 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 5.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 218 5.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 5.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 5.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 204 5.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 4 476 2.9E-162 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 321 4.7E-106 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 4 478 31.757 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 Gene3D G3DSA:1.10.10.350 376 485 1.5E-29 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 SUPERFAMILY SSF48163 315 478 2.75E-35 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CLM_1252 8e6ee26e13cfd6525287ddd8f27bda7e 485 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 SUPERFAMILY SSF53790 7 224 3.4E-80 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 8 226 37.085 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 Gene3D G3DSA:3.30.950.10 116 231 1.7E-40 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 Gene3D G3DSA:3.40.1010.10 2 115 3.1E-45 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 PIRSF PIRSF005917 1 284 1.5E-103 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 8 207 5.1E-31 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 9 281 3.3E-83 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CLM_0104 a35451e4a6bfda1111f5d2eff96b4241 284 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 86 97 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 3 287 40.794 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 Gene3D G3DSA:3.90.226.10 34 288 6.7E-93 T 13-10-2018 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 23 287 1.0E-125 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 Pfam PF01039 Carboxyl transferase domain 69 248 2.5E-23 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 SUPERFAMILY SSF52096 34 287 1.49E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 135 149 1.4E-41 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 206 223 1.4E-41 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 235 246 1.4E-41 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 169 187 1.4E-41 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4087 d2aaa4b0b6b25b59a2798600b5f617be 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 257 266 1.4E-41 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_3935 853dc3c6eb3887041b5ed6cf51e06a87 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 24.636 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z CLM_3935 853dc3c6eb3887041b5ed6cf51e06a87 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 2.0E-26 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3935 853dc3c6eb3887041b5ed6cf51e06a87 61 SUPERFAMILY SSF57716 6 61 4.56E-20 T 13-10-2018 CLM_3935 853dc3c6eb3887041b5ed6cf51e06a87 61 Gene3D G3DSA:4.10.830.10 1 61 8.7E-29 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 SUPERFAMILY SSF81653 301 398 4.84E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Gene3D G3DSA:3.30.70.100 72 135 1.7E-21 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Pfam PF00122 E1-E2 ATPase 299 477 8.4E-60 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 271 777 2.5E-107 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 500 506 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Gene3D G3DSA:2.70.150.20 291 403 2.6E-42 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Gene3D G3DSA:3.40.50.1000 479 749 4.7E-102 T 13-10-2018 IPR023214 HAD superfamily CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 674 691 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 117 137 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 268 287 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 421 435 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 481 496 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 288 306 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 215 234 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00943 Copper-transporting ATPase signature 731 745 1.4E-22 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 SUPERFAMILY SSF81665 242 795 1.31E-15 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Gene3D G3DSA:3.30.70.100 1 69 3.1E-20 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 230 806 4.4E-204 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 212 807 1.1E-190 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Pfam PF00403 Heavy-metal-associated domain 6 66 1.2E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Pfam PF00403 Heavy-metal-associated domain 76 136 4.3E-14 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Gene3D G3DSA:3.40.1110.10 509 629 4.7E-102 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 SUPERFAMILY SSF56784 497 804 7.73E-66 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 Pfam PF00702 haloacid dehalogenase-like hydrolase 496 711 8.8E-47 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 622 633 1.1E-30 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 498 512 1.1E-30 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 348 362 1.1E-30 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 720 732 1.1E-30 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 644 654 1.1E-30 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 697 716 1.1E-30 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00942 Copper-transporting ATPase 1 signature 3 28 3.8E-8 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00942 Copper-transporting ATPase 1 signature 213 238 3.8E-8 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 PRINTS PR00942 Copper-transporting ATPase 1 signature 96 117 3.8E-8 T 13-10-2018 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 SUPERFAMILY SSF55008 72 138 2.62E-20 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 SUPERFAMILY SSF55008 1 70 1.7E-19 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 75 137 8.6E-15 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CLM_1463 3e651b0f829a3abf12d432c5cc5ce2eb 811 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 5 67 4.1E-13 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CLM_0622 98033b903fd2a68efa761019c80198f0 221 SMART SM00382 32 218 1.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0622 98033b903fd2a68efa761019c80198f0 221 Pfam PF00005 ABC transporter 23 169 3.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0622 98033b903fd2a68efa761019c80198f0 221 Gene3D G3DSA:3.40.50.300 1 221 1.1E-65 T 13-10-2018 CLM_0622 98033b903fd2a68efa761019c80198f0 221 SUPERFAMILY SSF52540 3 220 2.35E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0622 98033b903fd2a68efa761019c80198f0 221 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2271 749e2fee87536f1da291d5355635a916 353 Pfam PF00483 Nucleotidyl transferase 2 233 1.2E-54 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CLM_2271 749e2fee87536f1da291d5355635a916 353 Gene3D G3DSA:3.90.550.10 1 239 4.7E-73 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2271 749e2fee87536f1da291d5355635a916 353 Gene3D G3DSA:2.160.10.10 240 349 1.2E-6 T 13-10-2018 CLM_2271 749e2fee87536f1da291d5355635a916 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 247 270 0.0011 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_2271 749e2fee87536f1da291d5355635a916 353 SUPERFAMILY SSF53448 1 303 9.91E-76 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2271 749e2fee87536f1da291d5355635a916 353 TIGRFAM TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase 2 353 1.6E-130 T 13-10-2018 IPR005908 Glucose-1-phosphate thymidylyltransferase, long form CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 SUPERFAMILY SSF52374 6 577 5.35E-143 T 13-10-2018 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 48 59 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 SUPERFAMILY SSF46589 816 880 2.56E-16 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Gene3D G3DSA:1.10.287.380 809 881 1.4E-16 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 TIGRFAM TIGR00422 valS: valine--tRNA ligase 7 862 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Hamap MF_02004 Valine--tRNA ligase [valS]. 7 881 16.03 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Gene3D G3DSA:3.40.50.620 27 528 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 565 7.6E-213 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 816 881 1.1E-18 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Gene3D G3DSA:1.10.730.10 7 743 0.0 T 13-10-2018 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 SUPERFAMILY SSF50677 196 345 1.7E-63 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 PRINTS PR00986 Valyl-tRNA synthetase signature 350 363 2.1E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 2.1E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 PRINTS PR00986 Valyl-tRNA synthetase signature 448 469 2.1E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 PRINTS PR00986 Valyl-tRNA synthetase signature 479 497 2.1E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 PRINTS PR00986 Valyl-tRNA synthetase signature 41 52 2.1E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Pfam PF08264 Anticodon-binding domain of tRNA 610 757 1.9E-46 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 SUPERFAMILY SSF47323 579 831 2.8E-71 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3576 f43ec5e5239e77e43903813a7ba515e1 881 Gene3D G3DSA:3.90.740.10 180 346 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CLM_3490 66e6d4ee4b1dbc60b27673295a18a513 335 SUPERFAMILY SSF53901 57 248 2.98E-15 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_3490 66e6d4ee4b1dbc60b27673295a18a513 335 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 8 334 1.1E-150 T 13-10-2018 IPR010894 Stage V sporulation AD CLM_3490 66e6d4ee4b1dbc60b27673295a18a513 335 Gene3D G3DSA:3.40.47.40 2 335 6.1E-150 T 13-10-2018 IPR038369 Stage V sporulation AD superfamily CLM_3490 66e6d4ee4b1dbc60b27673295a18a513 335 PIRSF PIRSF011570 2 335 4.7E-150 T 13-10-2018 IPR010894 Stage V sporulation AD CLM_3490 66e6d4ee4b1dbc60b27673295a18a513 335 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 6 334 2.6E-163 T 13-10-2018 IPR010894 Stage V sporulation AD CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 127 419 5.8E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 SUPERFAMILY SSF46548 12 135 1.15E-25 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 8 112 1.5E-32 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 Gene3D G3DSA:1.10.1060.10 1 125 8.1E-36 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 Gene3D G3DSA:3.50.50.60 126 255 4.3E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 Gene3D G3DSA:3.50.50.60 256 437 1.1E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 SUPERFAMILY SSF51971 125 355 1.0E-55 T 13-10-2018 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 PRINTS PR00419 Adrenodoxin reductase family signature 294 307 1.4E-22 T 13-10-2018 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 PRINTS PR00419 Adrenodoxin reductase family signature 260 274 1.4E-22 T 13-10-2018 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 PRINTS PR00419 Adrenodoxin reductase family signature 150 163 1.4E-22 T 13-10-2018 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 PRINTS PR00419 Adrenodoxin reductase family signature 192 202 1.4E-22 T 13-10-2018 CLM_3183 11a1b6f771faa66a2877783eceb8c925 438 PRINTS PR00419 Adrenodoxin reductase family signature 127 149 1.4E-22 T 13-10-2018 CLM_0092 51e7d69e612c96645e181c3ed6a0085d 313 SUPERFAMILY SSF143865 1 247 1.83E-50 T 13-10-2018 CLM_0092 51e7d69e612c96645e181c3ed6a0085d 313 SUPERFAMILY SSF144083 248 310 5.62E-15 T 13-10-2018 CLM_0092 51e7d69e612c96645e181c3ed6a0085d 313 Gene3D G3DSA:1.20.58.340 256 312 1.7E-11 T 13-10-2018 CLM_0092 51e7d69e612c96645e181c3ed6a0085d 313 Pfam PF01544 CorA-like Mg2+ transporter protein 24 309 8.5E-51 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CLM_0092 51e7d69e612c96645e181c3ed6a0085d 313 Gene3D G3DSA:1.20.58.340 133 254 2.2E-26 T 13-10-2018 CLM_0092 51e7d69e612c96645e181c3ed6a0085d 313 Gene3D G3DSA:3.30.460.20 1 132 1.9E-24 T 13-10-2018 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 SUPERFAMILY SSF46689 63 116 1.12E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 Pfam PF12833 Helix-turn-helix domain 35 109 5.1E-15 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 SUPERFAMILY SSF46689 10 61 2.24E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 SUPERFAMILY SSF55136 134 288 1.78E-24 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0854 6da72739ad903d77b9e782120d6b3037 290 Gene3D G3DSA:1.10.10.60 61 112 1.8E-12 T 13-10-2018 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 SMART SM00342 27 110 5.3E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 Gene3D G3DSA:1.10.10.60 6 60 1.8E-15 T 13-10-2018 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 SMART SM00871 134 286 6.4E-27 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_0854 6da72739ad903d77b9e782120d6b3037 290 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 64 106 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_0854 6da72739ad903d77b9e782120d6b3037 290 Gene3D G3DSA:3.20.80.10 134 290 1.2E-38 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0854 6da72739ad903d77b9e782120d6b3037 290 Pfam PF06445 GyrI-like small molecule binding domain 134 285 1.2E-20 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_0459 db258e966ff374b9657cb525ea754e5b 483 Gene3D G3DSA:1.20.1740.10 13 481 9.7E-74 T 13-10-2018 CLM_0459 db258e966ff374b9657cb525ea754e5b 483 Pfam PF13520 Amino acid permease 23 440 1.2E-46 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0459 db258e966ff374b9657cb525ea754e5b 483 PIRSF PIRSF006060 2 482 5.3E-89 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2865 cce3920d34802f2da6859bde25759967 608 Pfam PF00009 Elongation factor Tu GTP binding domain 8 199 5.6E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 Gene3D G3DSA:3.30.70.870 310 593 1.4E-132 T 13-10-2018 CLM_2865 cce3920d34802f2da6859bde25759967 608 Gene3D G3DSA:2.40.30.10 204 303 9.0E-36 T 13-10-2018 CLM_2865 cce3920d34802f2da6859bde25759967 608 Gene3D G3DSA:3.30.70.240 393 485 1.4E-132 T 13-10-2018 CLM_2865 cce3920d34802f2da6859bde25759967 608 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 9 602 2.3E-295 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 SUPERFAMILY SSF54980 402 516 6.71E-29 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_2865 cce3920d34802f2da6859bde25759967 608 SUPERFAMILY SSF54980 306 391 1.69E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_2865 cce3920d34802f2da6859bde25759967 608 SMART SM00838 401 487 7.8E-4 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_2865 cce3920d34802f2da6859bde25759967 608 Gene3D G3DSA:2.40.50.250 486 602 1.4E-132 T 13-10-2018 CLM_2865 cce3920d34802f2da6859bde25759967 608 Pfam PF03144 Elongation factor Tu domain 2 223 292 1.1E-9 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_2865 cce3920d34802f2da6859bde25759967 608 Gene3D G3DSA:3.40.50.300 6 202 1.6E-68 T 13-10-2018 CLM_2865 cce3920d34802f2da6859bde25759967 608 SUPERFAMILY SSF52540 5 211 3.13E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2865 cce3920d34802f2da6859bde25759967 608 PRINTS PR00315 GTP-binding elongation factor signature 75 85 4.4E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 PRINTS PR00315 GTP-binding elongation factor signature 55 63 4.4E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 PRINTS PR00315 GTP-binding elongation factor signature 127 136 4.4E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 PRINTS PR00315 GTP-binding elongation factor signature 11 24 4.4E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 151 1.8E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_2865 cce3920d34802f2da6859bde25759967 608 Pfam PF00679 Elongation factor G C-terminus 400 485 1.7E-23 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_2865 cce3920d34802f2da6859bde25759967 608 SUPERFAMILY SSF50447 156 302 8.84E-31 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 PIRSF PIRSF000770 2 250 6.2E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 Gene3D G3DSA:1.10.601.10 2 102 2.6E-24 T 13-10-2018 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 Pfam PF04539 Sigma-70 region 3 121 186 3.2E-6 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 Pfam PF04545 Sigma-70, region 4 198 246 9.0E-12 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 58 71 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 219 245 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 TIGRFAM TIGR02885 spore_sigF: RNA polymerase sigma-F factor 19 249 4.3E-115 T 13-10-2018 IPR014236 RNA polymerase sigma-F type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 SUPERFAMILY SSF88659 106 179 9.16E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 SUPERFAMILY SSF88946 10 102 2.75E-32 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 28 249 5.0E-83 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 Gene3D G3DSA:1.10.10.10 103 155 3.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 Pfam PF04542 Sigma-70 region 2 34 100 1.3E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 SUPERFAMILY SSF88659 168 249 3.55E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 249 1.7E-37 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 PRINTS PR00046 Major sigma-70 factor signature 82 90 7.8E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 PRINTS PR00046 Major sigma-70 factor signature 234 245 7.8E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 PRINTS PR00046 Major sigma-70 factor signature 58 71 7.8E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 PRINTS PR00046 Major sigma-70 factor signature 219 234 7.8E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 PRINTS PR00046 Major sigma-70 factor signature 202 214 7.8E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3492 0dcdfc2996fe864b3b309ac441ebea94 251 Gene3D G3DSA:1.10.10.10 178 250 1.2E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2454 4ba0f0911915328a4a444bedf9a06dbd 180 SUPERFAMILY SSF52949 8 175 1.85E-66 T 13-10-2018 CLM_2454 4ba0f0911915328a4a444bedf9a06dbd 180 Gene3D G3DSA:3.40.220.10 3 179 1.7E-72 T 13-10-2018 CLM_2454 4ba0f0911915328a4a444bedf9a06dbd 180 Pfam PF01661 Macro domain 25 141 4.8E-45 T 13-10-2018 IPR002589 Macro domain CLM_2454 4ba0f0911915328a4a444bedf9a06dbd 180 SMART SM00506 8 141 9.7E-51 T 13-10-2018 IPR002589 Macro domain CLM_3031 af5678b14fb4976658d12025f5baf970 133 Pfam PF00460 Flagella basal body rod protein 20 43 4.4E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CLM_3031 af5678b14fb4976658d12025f5baf970 133 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 14 130 7.6E-27 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 CLM_3031 af5678b14fb4976658d12025f5baf970 133 PIRSF PIRSF002889 4 133 2.2E-34 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 SMART SM00382 363 549 3.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 SUPERFAMILY SSF52540 331 571 1.11E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 Gene3D G3DSA:1.20.1560.10 5 321 4.3E-30 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 SUPERFAMILY SSF90123 6 319 6.67E-41 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 Pfam PF00005 ABC transporter 354 503 2.1E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 Pfam PF00664 ABC transporter transmembrane region 34 294 1.4E-11 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 Gene3D G3DSA:3.40.50.300 329 580 9.2E-89 T 13-10-2018 CLM_2585 a18e27b776b251f97d05a49aa30e97d6 581 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 302 5.3E-86 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 151 1.0E-39 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 Gene3D G3DSA:3.40.50.720 1 176 2.5E-52 T 13-10-2018 CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 179 298 1.3E-37 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 Gene3D G3DSA:1.10.1040.10 178 303 1.6E-39 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 SUPERFAMILY SSF48179 180 301 3.37E-30 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CLM_1321 05adee9de6748a98884b7ea8836ced0f 303 SUPERFAMILY SSF51735 1 160 6.95E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2512 0d4fff7b5077dffe1ebe3268d9076184 992 Pfam PF10145 Phage-related minor tail protein 128 326 1.2E-50 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_2512 0d4fff7b5077dffe1ebe3268d9076184 992 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 92 443 2.9E-81 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 4.4E-14 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 4.4E-14 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 4.4E-14 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 4.4E-14 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 333 432 1.4E-9 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 SUPERFAMILY SSF75169 666 811 1.77E-20 T 13-10-2018 IPR027396 DsrEFH-like CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Pfam PF13686 DsrE/DsrF/DrsH-like family 664 816 1.6E-64 T 13-10-2018 IPR032836 DsrE2-like family CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Pfam PF00581 Rhodanese-like domain 461 542 3.9E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Pfam PF01206 Sulfurtransferase TusA 575 643 4.0E-19 T 13-10-2018 IPR001455 TusA-like domain CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 SUPERFAMILY SSF51905 1 318 6.22E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Gene3D G3DSA:3.50.50.60 115 441 9.5E-180 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 SMART SM00450 454 548 1.3E-15 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 576 600 - T 13-10-2018 IPR001455 TusA-like domain CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 5.5E-26 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 5.5E-26 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 5.5E-26 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 5.5E-26 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 5.5E-26 T 13-10-2018 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Gene3D G3DSA:3.30.110.40 569 645 1.6E-24 T 13-10-2018 IPR036868 TusA-like domain superfamily CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 309 1.3E-63 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 SUPERFAMILY SSF55424 325 447 2.92E-29 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Gene3D G3DSA:3.50.50.60 4 342 9.5E-180 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Gene3D G3DSA:3.40.1260.10 659 817 1.3E-70 T 13-10-2018 IPR027396 DsrEFH-like CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 SUPERFAMILY SSF52821 433 543 1.44E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 SUPERFAMILY SSF64307 571 644 3.66E-19 T 13-10-2018 IPR036868 TusA-like domain superfamily CLM_0231 110ffe20bcccd9e1b6355a0ec8dd5e0e 817 Gene3D G3DSA:3.40.250.10 456 543 8.0E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 5 29 - T 13-10-2018 IPR001455 TusA-like domain CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 SUPERFAMILY SSF75169 95 193 6.08E-15 T 13-10-2018 IPR027396 DsrEFH-like CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 Gene3D G3DSA:3.40.1260.10 81 190 1.8E-5 T 13-10-2018 IPR027396 DsrEFH-like CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 Pfam PF01206 Sulfurtransferase TusA 4 70 1.1E-15 T 13-10-2018 IPR001455 TusA-like domain CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 SUPERFAMILY SSF64307 2 70 5.62E-13 T 13-10-2018 IPR036868 TusA-like domain superfamily CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 Gene3D G3DSA:3.30.110.40 3 80 2.8E-22 T 13-10-2018 IPR036868 TusA-like domain superfamily CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 Pfam PF02635 DsrE/DsrF-like family 132 192 2.8E-5 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CLM_2881 3a289cffcfff1bb38aaf553638bd8c7a 194 TIGRFAM TIGR03527 selenium_YedF: selenium metabolism protein YedF 5 193 1.4E-73 T 13-10-2018 IPR019870 Selenium metabolism protein YedF CLM_2356 45d3389159ff48acd16e0a140d5308da 285 Gene3D G3DSA:3.20.20.150 2 273 2.2E-56 T 13-10-2018 CLM_2356 45d3389159ff48acd16e0a140d5308da 285 Pfam PF01261 Xylose isomerase-like TIM barrel 21 228 4.3E-29 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CLM_2356 45d3389159ff48acd16e0a140d5308da 285 SUPERFAMILY SSF51658 3 275 1.09E-52 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CLM_3546 1814274f0710133132bc46905ab45dad 635 Gene3D G3DSA:3.30.54.20 130 186 7.3E-64 T 13-10-2018 CLM_3546 1814274f0710133132bc46905ab45dad 635 Gene3D G3DSA:3.30.980.10 70 221 7.3E-64 T 13-10-2018 CLM_3546 1814274f0710133132bc46905ab45dad 635 SUPERFAMILY SSF52954 527 632 1.15E-34 T 13-10-2018 CLM_3546 1814274f0710133132bc46905ab45dad 635 Gene3D G3DSA:3.10.20.30 1 64 2.7E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_3546 1814274f0710133132bc46905ab45dad 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 3.3E-52 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 505 518 3.3E-52 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 3.3E-52 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 532 544 3.3E-52 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 462 490 3.3E-52 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 SUPERFAMILY SSF55681 242 524 1.83E-101 T 13-10-2018 CLM_3546 1814274f0710133132bc46905ab45dad 635 Gene3D G3DSA:3.30.930.10 222 529 1.4E-130 T 13-10-2018 CLM_3546 1814274f0710133132bc46905ab45dad 635 Pfam PF03129 Anticodon binding domain 539 628 2.2E-24 T 13-10-2018 IPR004154 Anticodon-binding CLM_3546 1814274f0710133132bc46905ab45dad 635 SUPERFAMILY SSF81271 2 62 4.8E-15 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 SUPERFAMILY SSF55186 65 240 7.85E-64 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CLM_3546 1814274f0710133132bc46905ab45dad 635 Gene3D G3DSA:3.40.50.800 530 635 1.4E-35 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CLM_3546 1814274f0710133132bc46905ab45dad 635 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 323 527 1.9E-39 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3546 1814274f0710133132bc46905ab45dad 635 SMART SM00863 169 218 6.9E-25 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CLM_3546 1814274f0710133132bc46905ab45dad 635 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 4.7E-230 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 Pfam PF02824 TGS domain 2 61 1.1E-10 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CLM_3546 1814274f0710133132bc46905ab45dad 635 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 1.1E-15 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CLM_3546 1814274f0710133132bc46905ab45dad 635 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 632 35.022 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CLM_3563 f2098afef2e93918d7d77659ccc2b83c 560 Gene3D G3DSA:3.10.105.10 300 529 4.8E-165 T 13-10-2018 CLM_3563 f2098afef2e93918d7d77659ccc2b83c 560 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 473 2.6E-79 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CLM_3563 f2098afef2e93918d7d77659ccc2b83c 560 Gene3D G3DSA:3.40.190.10 53 546 4.8E-165 T 13-10-2018 CLM_3563 f2098afef2e93918d7d77659ccc2b83c 560 Gene3D G3DSA:3.90.76.10 72 197 4.8E-165 T 13-10-2018 CLM_3563 f2098afef2e93918d7d77659ccc2b83c 560 SUPERFAMILY SSF53850 35 551 1.66E-116 T 13-10-2018 CLM_3563 f2098afef2e93918d7d77659ccc2b83c 560 PIRSF PIRSF002741 2 557 3.1E-98 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 SMART SM00825 Beta-ketoacyl synthase 5 410 8.4E-16 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 367 1.1E-39 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 Gene3D G3DSA:3.40.47.10 255 399 2.7E-52 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 245 1.1E-60 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 PIRSF PIRSF000447 1 412 7.0E-184 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 408 3.0E-194 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 SUPERFAMILY SSF53901 213 410 6.31E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 Gene3D G3DSA:3.40.47.10 1 253 4.9E-96 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_4091 3475f96db14738c1fc1a80aa4f6ddd2c 412 SUPERFAMILY SSF53901 2 250 3.84E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_0235 2c99e08470414f9da8a7b57c86226dd8 116 Gene3D G3DSA:3.40.250.10 9 114 1.8E-25 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0235 2c99e08470414f9da8a7b57c86226dd8 116 SUPERFAMILY SSF52821 6 105 9.43E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0235 2c99e08470414f9da8a7b57c86226dd8 116 SMART SM00450 19 116 6.7E-12 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0235 2c99e08470414f9da8a7b57c86226dd8 116 Pfam PF00581 Rhodanese-like domain 20 105 6.9E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_2101 439a56c2c08037711958785df9f990ac 71 SUPERFAMILY SSF116842 2 68 1.31E-19 T 13-10-2018 CLM_2101 439a56c2c08037711958785df9f990ac 71 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 7 62 9.8E-22 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CLM_2101 439a56c2c08037711958785df9f990ac 71 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 4 42 3.0E-6 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CLM_2101 439a56c2c08037711958785df9f990ac 71 Pfam PF02609 Exonuclease VII small subunit 8 59 8.0E-19 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CLM_2101 439a56c2c08037711958785df9f990ac 71 Gene3D G3DSA:1.10.287.1040 2 71 1.9E-20 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 CLM_2101 439a56c2c08037711958785df9f990ac 71 PIRSF PIRSF006488 1 71 1.4E-22 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CLM_2101 439a56c2c08037711958785df9f990ac 71 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 7 67 14.445 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 Gene3D G3DSA:3.30.300.160 30 107 5.5E-7 T 13-10-2018 CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 SUPERFAMILY SSF160246 27 106 2.28E-13 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 Gene3D G3DSA:3.30.450.90 110 241 7.2E-43 T 13-10-2018 CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 337 351 - T 13-10-2018 IPR001482 Type II/IV secretion system protein CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 Gene3D G3DSA:3.40.50.300 243 509 1.8E-104 T 13-10-2018 CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 SUPERFAMILY SSF52540 122 470 3.86E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 Pfam PF00437 Type II/IV secretion system protein 147 409 3.4E-80 T 13-10-2018 IPR001482 Type II/IV secretion system protein CLM_2126 11ca5188fc19d9e0d6597dd68801392c 509 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 27 108 3.1E-15 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal CLM_0149 1737c77f3c9a1741784a11aace073ef1 460 SMART SM00729 113 308 0.0074 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_0149 1737c77f3c9a1741784a11aace073ef1 460 Gene3D G3DSA:3.20.20.70 110 385 1.1E-38 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0149 1737c77f3c9a1741784a11aace073ef1 460 Pfam PF13353 4Fe-4S single cluster domain 122 206 1.1E-6 T 13-10-2018 CLM_0149 1737c77f3c9a1741784a11aace073ef1 460 SUPERFAMILY SSF102114 111 394 1.65E-52 T 13-10-2018 CLM_0149 1737c77f3c9a1741784a11aace073ef1 460 Pfam PF04055 Radical SAM superfamily 118 247 5.5E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 Pfam PF01895 PhoU domain 450 534 3.7E-15 T 13-10-2018 IPR026022 PhoU domain CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 Pfam PF01895 PhoU domain 346 430 3.3E-17 T 13-10-2018 IPR026022 PhoU domain CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 SUPERFAMILY SSF109755 332 537 2.41E-53 T 13-10-2018 CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 Gene3D G3DSA:1.20.58.220 447 538 1.6E-17 T 13-10-2018 IPR038078 PhoU-like domain superfamily CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 Gene3D G3DSA:1.20.58.220 340 439 7.9E-20 T 13-10-2018 IPR038078 PhoU-like domain superfamily CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 Pfam PF02690 Na+/Pi-cotransporter 146 258 5.5E-19 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 Pfam PF02690 Na+/Pi-cotransporter 16 151 8.5E-54 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CLM_3911 9f106aa199f55ec947b3ed0c05b27cc9 538 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 6 313 7.3E-76 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 CLM_1025 390ecec767008ac12e2280f0ab44e715 286 Gene3D G3DSA:1.10.260.40 43 111 2.9E-12 T 13-10-2018 CLM_1025 390ecec767008ac12e2280f0ab44e715 286 SUPERFAMILY SSF47413 57 106 3.33E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1025 390ecec767008ac12e2280f0ab44e715 286 Pfam PF01381 Helix-turn-helix 57 103 1.8E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1025 390ecec767008ac12e2280f0ab44e715 286 SMART SM00530 54 108 3.0E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_4147 ceea536e70389233538f8a2765b8028f 625 Gene3D G3DSA:1.10.10.1800 459 549 2.9E-19 T 13-10-2018 CLM_4147 ceea536e70389233538f8a2765b8028f 625 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 623 42.003 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CLM_4147 ceea536e70389233538f8a2765b8028f 625 Gene3D G3DSA:3.50.50.60 1 230 1.3E-78 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4147 ceea536e70389233538f8a2765b8028f 625 Gene3D G3DSA:3.50.50.60 303 458 2.2E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4147 ceea536e70389233538f8a2765b8028f 625 SUPERFAMILY SSF51905 7 261 2.87E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4147 ceea536e70389233538f8a2765b8028f 625 Pfam PF13932 GidA associated domain 401 615 1.8E-77 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 CLM_4147 ceea536e70389233538f8a2765b8028f 625 Gene3D G3DSA:1.10.150.570 569 620 1.9E-22 T 13-10-2018 CLM_4147 ceea536e70389233538f8a2765b8028f 625 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CLM_4147 ceea536e70389233538f8a2765b8028f 625 Pfam PF01134 Glucose inhibited division protein A 9 398 4.3E-163 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CLM_4147 ceea536e70389233538f8a2765b8028f 625 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 161 8.8E-6 T 13-10-2018 CLM_4147 ceea536e70389233538f8a2765b8028f 625 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 8.8E-6 T 13-10-2018 CLM_4147 ceea536e70389233538f8a2765b8028f 625 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CLM_4147 ceea536e70389233538f8a2765b8028f 625 SMART SM01228 545 616 1.8E-40 T 13-10-2018 CLM_4147 ceea536e70389233538f8a2765b8028f 625 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 8 621 1.4E-267 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CLM_0021 876c156855b56256f9661da93745ab6e 117 SUPERFAMILY SSF160148 45 116 6.41E-25 T 13-10-2018 IPR036593 CPE0013-like superfamily CLM_0021 876c156855b56256f9661da93745ab6e 117 Pfam PF07892 Protein of unknown function (DUF1667) 34 113 1.0E-25 T 13-10-2018 IPR012460 Protein of unknown function DUF1667 CLM_0021 876c156855b56256f9661da93745ab6e 117 Gene3D G3DSA:3.10.530.10 44 113 4.9E-32 T 13-10-2018 IPR036593 CPE0013-like superfamily CLM_3008 20fdd0e1051239746799885fea0d1076 219 Gene3D G3DSA:2.40.10.220 95 213 4.0E-10 T 13-10-2018 CLM_3008 20fdd0e1051239746799885fea0d1076 219 Pfam PF07238 PilZ domain 94 210 3.9E-16 T 13-10-2018 IPR009875 PilZ domain GO:0035438 CLM_3008 20fdd0e1051239746799885fea0d1076 219 SUPERFAMILY SSF141371 131 214 1.24E-8 T 13-10-2018 CLM_3008 20fdd0e1051239746799885fea0d1076 219 Pfam PF12945 Flagellar protein YcgR 8 87 1.6E-18 T 13-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal CLM_3461 0c7b87e7ffe64b91619b50a4af926d33 476 Gene3D G3DSA:3.80.30.20 113 470 3.9E-74 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3461 0c7b87e7ffe64b91619b50a4af926d33 476 SUPERFAMILY SSF102114 145 462 9.16E-72 T 13-10-2018 CLM_3461 0c7b87e7ffe64b91619b50a4af926d33 476 SMART SM00729 148 375 1.6E-51 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_3461 0c7b87e7ffe64b91619b50a4af926d33 476 TIGRFAM TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ 67 470 2.8E-170 T 13-10-2018 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ CLM_3461 0c7b87e7ffe64b91619b50a4af926d33 476 Pfam PF04055 Radical SAM superfamily 155 328 2.6E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3325 1b6b0d345c4536ed7601f94f02034cd9 417 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 104 342 2.4E-25 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 CLM_3325 1b6b0d345c4536ed7601f94f02034cd9 417 Gene3D G3DSA:3.40.640.10 75 314 1.7E-54 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3325 1b6b0d345c4536ed7601f94f02034cd9 417 SUPERFAMILY SSF53383 76 413 1.93E-62 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3325 1b6b0d345c4536ed7601f94f02034cd9 417 Gene3D G3DSA:3.90.1150.10 315 412 2.5E-7 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_3410 29dde79d4180c9ae12d04b3f382d8ed0 212 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 7 204 25.199 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CLM_3410 29dde79d4180c9ae12d04b3f382d8ed0 212 Gene3D G3DSA:3.40.50.300 3 209 4.0E-65 T 13-10-2018 CLM_3410 29dde79d4180c9ae12d04b3f382d8ed0 212 Pfam PF01121 Dephospho-CoA kinase 10 187 1.1E-50 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CLM_3410 29dde79d4180c9ae12d04b3f382d8ed0 212 SUPERFAMILY SSF52540 9 198 4.27E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3410 29dde79d4180c9ae12d04b3f382d8ed0 212 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 10 195 7.9E-48 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 Pfam PF04055 Radical SAM superfamily 94 237 1.2E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 SUPERFAMILY SSF102114 87 422 1.83E-45 T 13-10-2018 CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 TIGRFAM TIGR04068 rSAM_ocin_clost: Cys-rich peptide radical SAM maturase CcpM 7 467 3.2E-206 T 13-10-2018 IPR024001 Cysteine-rich peptide, radical SAM maturase, CcpM CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 94 105 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 Pfam PF13353 4Fe-4S single cluster domain 95 216 1.4E-10 T 13-10-2018 CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 Gene3D G3DSA:3.20.20.70 85 463 6.5E-77 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3252 5400ccaa42de02e960a2e63f08879e0f 477 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 357 444 5.1E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_3162 63e3569b1e54ffd4574b5969f7e2905e 372 Gene3D G3DSA:1.20.1740.10 3 369 1.6E-5 T 13-10-2018 CLM_3162 63e3569b1e54ffd4574b5969f7e2905e 372 Pfam PF03845 Spore germination protein 9 319 7.1E-56 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_3162 63e3569b1e54ffd4574b5969f7e2905e 372 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 8 362 2.1E-97 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 ProSitePatterns PS00483 Dihydroorotase signature 2. 278 289 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 Gene3D G3DSA:3.20.20.140 53 338 1.9E-130 T 13-10-2018 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 ProSitePatterns PS00482 Dihydroorotase signature 1. 56 64 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 Pfam PF01979 Amidohydrolase family 49 392 8.2E-28 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 Gene3D G3DSA:2.30.40.10 4 393 1.9E-130 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 19 395 1.6E-103 T 13-10-2018 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 SUPERFAMILY SSF51556 54 338 1.9E-82 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 SUPERFAMILY SSF51338 1 394 1.39E-26 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3651 fea372bcd45fd29dc4b65448465f7e6f 396 Hamap MF_00220_B Dihydroorotase [pyrC]. 4 395 38.177 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 18 195 5.8E-45 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 SUPERFAMILY SSF48179 215 308 1.31E-30 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 SUPERFAMILY SSF51735 18 208 1.48E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 334 426 7.1E-23 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 Gene3D G3DSA:3.40.50.720 1 212 5.8E-69 T 13-10-2018 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 PIRSF PIRSF500136 7 438 2.2E-168 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 SUPERFAMILY SSF52413 318 425 4.58E-26 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 PIRSF PIRSF000124 17 437 6.7E-69 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 Gene3D G3DSA:3.40.50.720 215 437 1.6E-64 T 13-10-2018 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 216 306 3.4E-28 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 SMART SM00984 333 427 1.5E-31 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3514 50fbfd34cb2e85d45aa9446d127bc491 438 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 18 423 3.8E-135 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CLM_3786 f8dcdc43e36f06191e3498f1c53aa1bf 709 Gene3D G3DSA:3.40.50.300 202 378 1.5E-13 T 13-10-2018 CLM_3786 f8dcdc43e36f06191e3498f1c53aa1bf 709 SUPERFAMILY SSF52540 203 703 1.63E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3786 f8dcdc43e36f06191e3498f1c53aa1bf 709 Gene3D G3DSA:3.40.50.300 380 532 2.5E-10 T 13-10-2018 CLM_3786 f8dcdc43e36f06191e3498f1c53aa1bf 709 Gene3D G3DSA:3.40.50.300 558 709 9.6E-34 T 13-10-2018 CLM_3786 f8dcdc43e36f06191e3498f1c53aa1bf 709 Pfam PF13245 AAA domain 218 531 1.2E-12 T 13-10-2018 CLM_2911 df802b4191fdb0003429dc2bda9fbca3 351 SUPERFAMILY SSF52218 165 327 7.94E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2911 df802b4191fdb0003429dc2bda9fbca3 351 Pfam PF03358 NADPH-dependent FMN reductase 165 321 2.1E-14 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_2911 df802b4191fdb0003429dc2bda9fbca3 351 Gene3D G3DSA:3.40.50.360 165 351 4.5E-22 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3235 f02fc89448ee841b5d0f0a50da3b04eb 73 Pfam PF07872 Protein of unknown function (DUF1659) 8 49 1.9E-12 T 13-10-2018 IPR012454 Protein of unknown function DUF1659 CLM_0485 4ae9de2418f1d19391bf7d11115be162 284 Pfam PF02673 Bacitracin resistance protein BacA 7 271 4.0E-84 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CLM_0485 4ae9de2418f1d19391bf7d11115be162 284 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 269 2.8E-73 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CLM_0485 4ae9de2418f1d19391bf7d11115be162 284 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 276 18.074 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 566 618 4.1E-11 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 2.2E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 PRINTS PR01005 Flagellar hook-associated protein signature 134 154 2.2E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 PRINTS PR01005 Flagellar hook-associated protein signature 167 191 2.2E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 Pfam PF00460 Flagella basal body rod protein 8 37 1.9E-8 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 SUPERFAMILY SSF64518 150 620 1.7E-18 T 13-10-2018 CLM_3106 f9ea7e810e45ee373312a499cadc7887 622 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 241 5.5E-67 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CLM_0599 a7d5e13bb1948ea5aa9a9f8e47e46bde 194 Pfam PF01966 HD domain 26 144 4.8E-17 T 13-10-2018 IPR006674 HD domain CLM_0599 a7d5e13bb1948ea5aa9a9f8e47e46bde 194 TIGRFAM TIGR00277 HDIG: HDIG domain 24 114 6.2E-9 T 13-10-2018 IPR006675 HDIG domain CLM_0599 a7d5e13bb1948ea5aa9a9f8e47e46bde 194 SMART SM00471 20 154 1.7E-9 T 13-10-2018 IPR003607 HD/PDEase domain CLM_0599 a7d5e13bb1948ea5aa9a9f8e47e46bde 194 Gene3D G3DSA:1.10.3210.10 3 185 3.7E-58 T 13-10-2018 CLM_0599 a7d5e13bb1948ea5aa9a9f8e47e46bde 194 SUPERFAMILY SSF109604 22 182 2.66E-34 T 13-10-2018 CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 Gene3D G3DSA:1.10.10.60 3 54 1.0E-18 T 13-10-2018 CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 5.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 5.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 Gene3D G3DSA:1.10.357.10 55 207 1.7E-30 T 13-10-2018 CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 SUPERFAMILY SSF48498 83 207 7.11E-30 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 SUPERFAMILY SSF46689 8 75 2.1E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1748 fab8ba56c851bcc655e92c1fdbb0d87b 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 4.7E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0691 e7ce6fb5f58c1e50a96862bbea2aa9ea 450 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 333 415 1.6E-14 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_0691 e7ce6fb5f58c1e50a96862bbea2aa9ea 450 Pfam PF13353 4Fe-4S single cluster domain 100 218 2.0E-12 T 13-10-2018 CLM_0691 e7ce6fb5f58c1e50a96862bbea2aa9ea 450 TIGRFAM TIGR04334 rSAM_Clo7bot: radical SAM/SPASM domain Clo7bot peptide maturase 2 440 4.6E-258 T 13-10-2018 IPR027622 Radical SAM/SPASM domain-containing Clo7bot peptide maturase CLM_0691 e7ce6fb5f58c1e50a96862bbea2aa9ea 450 SUPERFAMILY SSF102114 93 407 8.63E-45 T 13-10-2018 CLM_0691 e7ce6fb5f58c1e50a96862bbea2aa9ea 450 Gene3D G3DSA:3.20.20.70 90 439 2.4E-58 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0691 e7ce6fb5f58c1e50a96862bbea2aa9ea 450 Pfam PF04055 Radical SAM superfamily 97 262 2.7E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 Hamap MF_00109 Shikimate kinase [aroK]. 1 165 24.171 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 PRINTS PR01100 Shikimate kinase family signature 28 41 8.7E-22 T 13-10-2018 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 PRINTS PR01100 Shikimate kinase family signature 74 83 8.7E-22 T 13-10-2018 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 PRINTS PR01100 Shikimate kinase family signature 56 64 8.7E-22 T 13-10-2018 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 PRINTS PR01100 Shikimate kinase family signature 4 19 8.7E-22 T 13-10-2018 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 PRINTS PR01100 Shikimate kinase family signature 95 112 8.7E-22 T 13-10-2018 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 Gene3D G3DSA:3.40.50.300 2 167 1.3E-49 T 13-10-2018 CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 SUPERFAMILY SSF52540 3 159 1.22E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2116 d19a9320e4a65432603ed180f3fa9412 170 Pfam PF01202 Shikimate kinase 12 155 6.9E-41 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 223 244 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 Gene3D G3DSA:1.10.4030.30 38 313 5.1E-50 T 13-10-2018 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 Gene3D G3DSA:3.10.50.40 195 288 5.1E-50 T 13-10-2018 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 SUPERFAMILY SSF109998 36 224 1.61E-32 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 Pfam PF13624 SurA N-terminal domain 4 164 9.6E-21 T 13-10-2018 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 Hamap MF_01145 Foldase protein PrsA [prsA]. 5 336 16.507 T 13-10-2018 IPR023059 Foldase protein PrsA GO:0003755 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 Pfam PF13145 PPIC-type PPIASE domain 174 300 5.4E-22 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 CLM_4030 ab46f43ea16308e82a65c7e47987b12c 336 SUPERFAMILY SSF54534 194 289 6.36E-25 T 13-10-2018 CLM_3808 3b282687c5c98d5b916e460361283759 445 Pfam PF02056 Family 4 glycosyl hydrolase 6 187 2.6E-72 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 SUPERFAMILY SSF56327 173 440 3.41E-93 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_3808 3b282687c5c98d5b916e460361283759 445 Gene3D G3DSA:3.90.110.10 171 443 1.1E-100 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_3808 3b282687c5c98d5b916e460361283759 445 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 4.6E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3808 3b282687c5c98d5b916e460361283759 445 SUPERFAMILY SSF51735 4 168 6.17E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3808 3b282687c5c98d5b916e460361283759 445 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 412 2.0E-50 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CLM_3808 3b282687c5c98d5b916e460361283759 445 Gene3D G3DSA:3.40.50.720 1 170 6.7E-70 T 13-10-2018 CLM_2237 9ad20c4b559746917688edbefadbe7c2 379 Gene3D G3DSA:3.40.640.10 15 260 7.8E-112 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2237 9ad20c4b559746917688edbefadbe7c2 379 SUPERFAMILY SSF53383 2 363 1.42E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2237 9ad20c4b559746917688edbefadbe7c2 379 PIRSF PIRSF000524 1 378 4.0E-94 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 CLM_2237 9ad20c4b559746917688edbefadbe7c2 379 Pfam PF00266 Aminotransferase class-V 29 323 2.3E-31 T 13-10-2018 IPR000192 Aminotransferase class V domain CLM_2237 9ad20c4b559746917688edbefadbe7c2 379 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 182 202 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_2237 9ad20c4b559746917688edbefadbe7c2 379 Gene3D G3DSA:3.90.1150.10 10 367 7.8E-112 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1884 f1ffd532b8d959ed70b69861afbb4848 388 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 256 276 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_1884 f1ffd532b8d959ed70b69861afbb4848 388 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_1884 f1ffd532b8d959ed70b69861afbb4848 388 SUPERFAMILY SSF56796 3 384 1.57E-122 T 13-10-2018 CLM_1884 f1ffd532b8d959ed70b69861afbb4848 388 Pfam PF00465 Iron-containing alcohol dehydrogenase 7 373 3.2E-117 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_1884 f1ffd532b8d959ed70b69861afbb4848 388 Gene3D G3DSA:1.20.1090.10 183 384 6.0E-64 T 13-10-2018 CLM_1884 f1ffd532b8d959ed70b69861afbb4848 388 Gene3D G3DSA:3.40.50.1970 1 182 2.2E-52 T 13-10-2018 CLM_0406 697d64f403bc363c44301645c0b430ea 209 SMART SM00793 6 204 8.2E-17 T 13-10-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CLM_0406 697d64f403bc363c44301645c0b430ea 209 Pfam PF04647 Accessory gene regulator B 8 195 7.1E-40 T 13-10-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SUPERFAMILY SSF50249 318 395 3.77E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Pfam PF12826 Helix-hairpin-helix motif 508 569 1.4E-22 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SMART SM00532 3 445 2.4E-165 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SUPERFAMILY SSF56091 2 315 1.2E-94 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Gene3D G3DSA:1.10.287.610 2 69 1.3E-18 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Gene3D G3DSA:3.30.470.90 70 318 7.3E-73 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SUPERFAMILY SSF47781 404 581 5.93E-57 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Gene3D G3DSA:3.40.50.10190 580 664 7.7E-27 T 13-10-2018 IPR036420 BRCT domain superfamily CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Hamap MF_01588 DNA ligase [ligA]. 1 663 44.679 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SMART SM00278 477 496 510.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SMART SM00278 541 560 3.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SMART SM00278 509 528 160.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SMART SM00278 443 462 0.51 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SMART SM00292 589 664 3.1E-11 T 13-10-2018 IPR001357 BRCT domain CLM_3704 794d8ac7459478737eee37a54ee6e613 664 PIRSF PIRSF001604 1 664 4.2E-232 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 SUPERFAMILY SSF52113 588 662 1.62E-20 T 13-10-2018 IPR036420 BRCT domain superfamily CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 318 5.6E-91 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 321 397 2.5E-29 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 659 1.7E-212 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Pfam PF14520 Helix-hairpin-helix domain 443 498 0.005 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 589 660 1.9E-16 T 13-10-2018 IPR001357 BRCT domain CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Gene3D G3DSA:1.10.150.20 429 502 2.7E-23 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Gene3D G3DSA:1.10.150.20 503 579 2.3E-24 T 13-10-2018 CLM_3704 794d8ac7459478737eee37a54ee6e613 664 Gene3D G3DSA:2.40.50.140 319 404 3.8E-29 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 Gene3D G3DSA:3.30.230.10 222 400 1.0E-72 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_0006 f125d41222df129a928130f4714cc189 637 Pfam PF00204 DNA gyrase B 223 392 3.0E-61 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_0006 f125d41222df129a928130f4714cc189 637 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 37 177 7.5E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0006 f125d41222df129a928130f4714cc189 637 SMART SM00387 34 178 5.0E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0006 f125d41222df129a928130f4714cc189 637 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 9 637 0.0 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 ProSitePatterns PS00177 DNA topoisomerase II signature. 424 432 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_0006 f125d41222df129a928130f4714cc189 637 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 565 626 8.3E-32 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 Gene3D G3DSA:3.40.50.670 401 637 1.6E-111 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 506 523 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 526 538 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 38 53 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 569 585 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 422 436 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 116 130 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 73 86 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 488 504 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR00418 DNA topoisomerase II family signature 270 283 3.7E-73 T 13-10-2018 CLM_0006 f125d41222df129a928130f4714cc189 637 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 6 637 94.431 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 Gene3D G3DSA:3.30.565.10 5 221 7.0E-93 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0006 f125d41222df129a928130f4714cc189 637 SUPERFAMILY SSF55874 9 220 1.44E-76 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0006 f125d41222df129a928130f4714cc189 637 SUPERFAMILY SSF54211 223 393 4.36E-60 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_0006 f125d41222df129a928130f4714cc189 637 SUPERFAMILY SSF56719 396 631 2.07E-93 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CLM_0006 f125d41222df129a928130f4714cc189 637 SMART SM00433 38 630 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_0006 f125d41222df129a928130f4714cc189 637 Pfam PF01751 Toprim domain 421 532 8.5E-18 T 13-10-2018 IPR006171 TOPRIM domain CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 472 481 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 198 211 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 362 376 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 183 198 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 314 330 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 9 19 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 590 602 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 222 244 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 376 396 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_0006 f125d41222df129a928130f4714cc189 637 PRINTS PR01159 DNA gyrase subunit B signature 606 622 8.9E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CLM_1817 6260f6ed6dc7be10a56b3523ba258035 73 Pfam PF01206 Sulfurtransferase TusA 5 73 5.2E-16 T 13-10-2018 IPR001455 TusA-like domain CLM_1817 6260f6ed6dc7be10a56b3523ba258035 73 Gene3D G3DSA:3.30.110.40 1 73 8.7E-15 T 13-10-2018 IPR036868 TusA-like domain superfamily CLM_1817 6260f6ed6dc7be10a56b3523ba258035 73 SUPERFAMILY SSF64307 4 73 6.8E-17 T 13-10-2018 IPR036868 TusA-like domain superfamily CLM_3353 3f66569d9727cb48a36da04862523edb 381 Gene3D G3DSA:2.60.260.20 262 369 2.4E-29 T 13-10-2018 CLM_3353 3f66569d9727cb48a36da04862523edb 381 SUPERFAMILY SSF49493 118 265 8.5E-17 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CLM_3353 3f66569d9727cb48a36da04862523edb 381 Pfam PF01556 DnaJ C terminal domain 124 341 9.1E-45 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal CLM_3353 3f66569d9727cb48a36da04862523edb 381 SUPERFAMILY SSF57938 138 219 3.53E-19 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CLM_3353 3f66569d9727cb48a36da04862523edb 381 SUPERFAMILY SSF49493 267 352 1.44E-23 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CLM_3353 3f66569d9727cb48a36da04862523edb 381 SUPERFAMILY SSF46565 1 106 3.27E-37 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CLM_3353 3f66569d9727cb48a36da04862523edb 381 Pfam PF00684 DnaJ central domain 151 215 2.0E-14 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CLM_3353 3f66569d9727cb48a36da04862523edb 381 Gene3D G3DSA:1.10.287.110 2 117 8.1E-40 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CLM_3353 3f66569d9727cb48a36da04862523edb 381 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 378 40.862 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CLM_3353 3f66569d9727cb48a36da04862523edb 381 Gene3D G3DSA:2.60.260.20 121 257 1.8E-36 T 13-10-2018 CLM_3353 3f66569d9727cb48a36da04862523edb 381 PRINTS PR00625 DnaJ domain signature 62 81 2.9E-29 T 13-10-2018 IPR001623 DnaJ domain CLM_3353 3f66569d9727cb48a36da04862523edb 381 PRINTS PR00625 DnaJ domain signature 25 40 2.9E-29 T 13-10-2018 IPR001623 DnaJ domain CLM_3353 3f66569d9727cb48a36da04862523edb 381 PRINTS PR00625 DnaJ domain signature 7 25 2.9E-29 T 13-10-2018 IPR001623 DnaJ domain CLM_3353 3f66569d9727cb48a36da04862523edb 381 PRINTS PR00625 DnaJ domain signature 42 62 2.9E-29 T 13-10-2018 IPR001623 DnaJ domain CLM_3353 3f66569d9727cb48a36da04862523edb 381 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 358 4.6E-143 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CLM_3353 3f66569d9727cb48a36da04862523edb 381 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 13-10-2018 IPR018253 DnaJ domain, conserved site CLM_3353 3f66569d9727cb48a36da04862523edb 381 Gene3D G3DSA:2.10.230.10 151 215 1.8E-36 T 13-10-2018 CLM_3353 3f66569d9727cb48a36da04862523edb 381 SMART SM00271 4 62 4.5E-34 T 13-10-2018 IPR001623 DnaJ domain CLM_3353 3f66569d9727cb48a36da04862523edb 381 Pfam PF00226 DnaJ domain 5 67 3.2E-29 T 13-10-2018 IPR001623 DnaJ domain CLM_2702 b53890398b05bd79314197eb5e28c01f 401 Gene3D G3DSA:3.30.70.260 265 333 5.9E-26 T 13-10-2018 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 Pfam PF13840 ACT domain 333 393 8.2E-19 T 13-10-2018 IPR027795 CASTOR, ACT domain CLM_2702 b53890398b05bd79314197eb5e28c01f 401 Gene3D G3DSA:3.40.1160.10 1 258 1.3E-78 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_2702 b53890398b05bd79314197eb5e28c01f 401 SUPERFAMILY SSF55021 330 399 2.96E-15 T 13-10-2018 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 SUPERFAMILY SSF55021 254 342 1.98E-5 T 13-10-2018 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 Gene3D G3DSA:3.30.70.260 259 398 5.9E-26 T 13-10-2018 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 Pfam PF00696 Amino acid kinase family 2 235 7.2E-51 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 PIRSF PIRSF000726 1 59 6.5E-9 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 PIRSF PIRSF000726 48 400 1.0E-82 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 SUPERFAMILY SSF53633 4 246 7.99E-67 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_2702 b53890398b05bd79314197eb5e28c01f 401 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_2702 b53890398b05bd79314197eb5e28c01f 401 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 67 397 2.2E-90 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_0265 e51457e04aa73e9a2bbd5b9ea1677770 450 Pfam PF07501 G5 domain 382 449 1.3E-15 T 13-10-2018 IPR011098 G5 domain CLM_0265 e51457e04aa73e9a2bbd5b9ea1677770 450 Pfam PF04294 VanW like protein 236 365 7.4E-50 T 13-10-2018 IPR007391 Vancomycin resistance VanW CLM_0265 e51457e04aa73e9a2bbd5b9ea1677770 450 Gene3D G3DSA:2.20.230.10 378 450 4.1E-13 T 13-10-2018 CLM_0265 e51457e04aa73e9a2bbd5b9ea1677770 450 Pfam PF12229 Putative peptidoglycan binding domain 83 192 4.3E-22 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain CLM_0265 e51457e04aa73e9a2bbd5b9ea1677770 450 SMART SM01208 373 450 2.6E-20 T 13-10-2018 IPR011098 G5 domain CLM_3487 35d148642a1737d5475c31274cb6bb13 184 PIRSF PIRSF021383 1 182 4.6E-54 T 13-10-2018 IPR014197 Sporulation protein YunB CLM_3487 35d148642a1737d5475c31274cb6bb13 184 Pfam PF09560 Sporulation protein YunB (Spo_YunB) 78 167 8.2E-33 T 13-10-2018 IPR014197 Sporulation protein YunB CLM_3487 35d148642a1737d5475c31274cb6bb13 184 TIGRFAM TIGR02832 spo_yunB: sporulation protein YunB 2 170 2.3E-60 T 13-10-2018 IPR014197 Sporulation protein YunB CLM_1309 d437c6043136d16f6fb2b3d0d44bca51 383 Pfam PF13240 zinc-ribbon domain 3 24 1.8E-7 T 13-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 CLM_1309 d437c6043136d16f6fb2b3d0d44bca51 383 Gene3D G3DSA:1.20.58.1690 291 378 8.9E-20 T 13-10-2018 IPR038434 YARHG domain superfamily CLM_1309 d437c6043136d16f6fb2b3d0d44bca51 383 SMART SM01324 297 381 1.3E-30 T 13-10-2018 IPR025582 YARHG domain CLM_1309 d437c6043136d16f6fb2b3d0d44bca51 383 Pfam PF13308 YARHG domain 298 378 2.4E-25 T 13-10-2018 IPR025582 YARHG domain CLM_1582 a1d10169d41e74fa2beb08650a75e7a5 207 Gene3D G3DSA:3.90.79.10 3 201 4.7E-44 T 13-10-2018 CLM_1582 a1d10169d41e74fa2beb08650a75e7a5 207 SUPERFAMILY SSF55811 26 195 1.23E-28 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_1582 a1d10169d41e74fa2beb08650a75e7a5 207 Pfam PF00293 NUDIX domain 47 134 6.0E-13 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_1582 a1d10169d41e74fa2beb08650a75e7a5 207 ProSitePatterns PS00893 Nudix box signature. 63 84 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CLM_1466 2c99eb905270734fdef4978e5e758a77 572 SUPERFAMILY SSF52540 322 564 3.48E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1466 2c99eb905270734fdef4978e5e758a77 572 Pfam PF00005 ABC transporter 348 497 4.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1466 2c99eb905270734fdef4978e5e758a77 572 SMART SM00382 357 549 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1466 2c99eb905270734fdef4978e5e758a77 572 Gene3D G3DSA:1.20.1560.10 1 315 1.6E-76 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1466 2c99eb905270734fdef4978e5e758a77 572 Gene3D G3DSA:3.40.50.300 323 571 1.8E-91 T 13-10-2018 CLM_1466 2c99eb905270734fdef4978e5e758a77 572 Pfam PF00664 ABC transporter transmembrane region 19 286 1.2E-40 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_1466 2c99eb905270734fdef4978e5e758a77 572 SUPERFAMILY SSF90123 3 317 1.01E-73 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1466 2c99eb905270734fdef4978e5e758a77 572 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 Gene3D G3DSA:1.20.1480.50 173 271 2.8E-12 T 13-10-2018 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 Gene3D G3DSA:1.10.287.950 272 571 3.4E-53 T 13-10-2018 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 181 2.5E-31 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 SUPERFAMILY SSF58104 241 571 4.01E-54 T 13-10-2018 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 SMART SM00283 281 571 1.8E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 356 523 2.2E-28 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 SMART SM00304 211 266 0.0016 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 420 3.1E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 422 451 3.1E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 3.1E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_1529 b6afcaa4606017485068e77e6e6327f6 572 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 316 345 3.1E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_2968 ca9efee530e365d2d35ebf6ae3995511 311 Gene3D G3DSA:1.20.58.340 235 311 1.3E-26 T 13-10-2018 CLM_2968 ca9efee530e365d2d35ebf6ae3995511 311 Gene3D G3DSA:1.20.58.340 122 233 3.3E-15 T 13-10-2018 CLM_2968 ca9efee530e365d2d35ebf6ae3995511 311 SUPERFAMILY SSF143865 20 245 1.05E-36 T 13-10-2018 CLM_2968 ca9efee530e365d2d35ebf6ae3995511 311 Pfam PF01544 CorA-like Mg2+ transporter protein 21 307 5.6E-68 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CLM_2968 ca9efee530e365d2d35ebf6ae3995511 311 SUPERFAMILY SSF144083 246 309 1.31E-19 T 13-10-2018 CLM_2968 ca9efee530e365d2d35ebf6ae3995511 311 Gene3D G3DSA:3.30.460.20 9 121 1.3E-12 T 13-10-2018 CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 SUPERFAMILY SSF52172 2 127 1.99E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 217 1.2E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 SMART SM00862 144 218 1.8E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 Gene3D G3DSA:3.40.50.2300 1 125 2.2E-30 T 13-10-2018 CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 SMART SM00448 2 111 1.9E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 SUPERFAMILY SSF46894 118 218 6.8E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 Gene3D G3DSA:1.10.10.10 126 219 3.4E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1826 dae8ddbc5dcc2579955887f3e4deb44c 219 Pfam PF00072 Response regulator receiver domain 4 112 1.5E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 Gene3D G3DSA:1.10.560.10 7 519 3.0E-229 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 7.7E-252 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 Hamap MF_00600 60 kDa chaperonin [groL]. 1 540 41.015 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 1.5E-104 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 SUPERFAMILY SSF54849 136 206 3.2E-26 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 Gene3D G3DSA:3.50.7.10 190 371 3.0E-229 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 PRINTS PR00298 60kDa chaperonin signature 82 109 1.7E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 PRINTS PR00298 60kDa chaperonin signature 396 417 1.7E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 PRINTS PR00298 60kDa chaperonin signature 348 373 1.7E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 PRINTS PR00298 60kDa chaperonin signature 266 289 1.7E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 PRINTS PR00298 60kDa chaperonin signature 26 52 1.7E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 SUPERFAMILY SSF48592 6 519 1.08E-77 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 Gene3D G3DSA:3.30.260.10 136 408 3.0E-229 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 SUPERFAMILY SSF52029 183 374 3.89E-82 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CLM_3732 f38b6b35e7b06f4605eaf552e8b6d1fb 541 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 SUPERFAMILY SSF51569 1 290 1.99E-98 T 13-10-2018 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 288 62.055 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 Pfam PF00701 Dihydrodipicolinate synthetase family 4 288 1.8E-90 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 PIRSF PIRSF001365 1 292 5.4E-90 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 Gene3D G3DSA:3.20.20.70 2 292 2.8E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 1.3E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 1.3E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 1.3E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 1.3E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 SMART SM01130 3 290 3.9E-131 T 13-10-2018 IPR002220 DapA-like GO:0016829 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3565 ca1f2e25ef9088a42f1949f830f7b87c 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 288 7.5E-106 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_2243 ab5e9236e860016db6adc3e3bc79c1a2 451 SUPERFAMILY SSF103473 1 430 1.27E-36 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_2243 ab5e9236e860016db6adc3e3bc79c1a2 451 Gene3D G3DSA:1.20.1250.20 2 214 4.4E-41 T 13-10-2018 CLM_2243 ab5e9236e860016db6adc3e3bc79c1a2 451 Gene3D G3DSA:1.20.1250.20 215 449 7.6E-42 T 13-10-2018 CLM_2243 ab5e9236e860016db6adc3e3bc79c1a2 451 Pfam PF07690 Major Facilitator Superfamily 23 392 2.8E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 SMART SM00481 14 81 4.8E-29 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 Pfam PF14579 Helix-hairpin-helix motif 829 917 8.3E-24 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 13 1065 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 Pfam PF02811 PHP domain 15 186 1.3E-53 T 13-10-2018 IPR004013 PHP domain GO:0003824 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 Pfam PF01336 OB-fold nucleic acid binding domain 1028 1106 6.4E-8 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 Gene3D G3DSA:1.10.10.1600 459 536 9.8E-31 T 13-10-2018 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 SUPERFAMILY SSF89550 14 276 1.29E-46 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 Gene3D G3DSA:3.20.20.140 1 282 3.7E-114 T 13-10-2018 CLM_3836 1a94eab416599df92c6023e48176e2bf 1185 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 304 746 2.4E-175 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_1125 e591f589dfd4513507094b1d0c57d58f 124 Pfam PF13545 Crp-like helix-turn-helix domain 49 115 1.1E-13 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_1125 e591f589dfd4513507094b1d0c57d58f 124 SUPERFAMILY SSF46785 48 117 4.9E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1125 e591f589dfd4513507094b1d0c57d58f 124 Gene3D G3DSA:1.10.10.10 17 123 5.2E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 Gene3D G3DSA:1.20.120.140 6 302 7.5E-112 T 13-10-2018 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 Pfam PF00448 SRP54-type protein, GTPase domain 103 303 3.5E-78 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 SMART SM00382 102 260 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 SUPERFAMILY SSF52540 102 302 9.88E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 SUPERFAMILY SSF47364 5 83 7.07E-22 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 SMART SM00963 9 90 4.4E-20 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 SMART SM00962 103 303 1.1E-107 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 Gene3D G3DSA:3.40.50.300 103 292 7.5E-112 T 13-10-2018 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 33 303 59.098 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 277 290 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 34 303 3.5E-109 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CLM_2744 8924fd50028ac84a6790aa9c13dd3619 303 Pfam PF02881 SRP54-type protein, helical bundle domain 20 83 6.8E-13 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 Pfam PF07664 Ferrous iron transport protein B C terminus 458 510 8.6E-21 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 SUPERFAMILY SSF52540 4 169 3.76E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 6.4E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 6.4E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 Pfam PF07670 Nucleoside recognition 515 643 2.3E-31 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 Pfam PF07670 Nucleoside recognition 354 448 6.4E-12 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 156 3.0E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 Gene3D G3DSA:3.40.50.300 4 197 5.3E-44 T 13-10-2018 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 640 9.3E-181 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 CLM_1186 397faba35bbafcfdbc14c42d1bb4a4d9 718 Pfam PF02421 Ferrous iron transport protein B 4 157 1.0E-67 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 CLM_3310 421f418c76abadc951054dde6d263d79 93 SUPERFAMILY SSF103007 1 93 2.75E-32 T 13-10-2018 IPR036746 TT1725-like superfamily CLM_3310 421f418c76abadc951054dde6d263d79 93 Gene3D G3DSA:3.30.70.1120 1 93 2.4E-26 T 13-10-2018 IPR036746 TT1725-like superfamily CLM_3310 421f418c76abadc951054dde6d263d79 93 Pfam PF04456 Protein of unknown function (DUF503) 3 89 1.4E-32 T 13-10-2018 IPR007546 Protein of unknown function DUF503 CLM_1846 75feb3c252e276465fc6f157005c5893 554 SMART SM00642 13 415 3.3E-157 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CLM_1846 75feb3c252e276465fc6f157005c5893 554 Gene3D G3DSA:3.20.20.80 170 476 1.2E-116 T 13-10-2018 CLM_1846 75feb3c252e276465fc6f157005c5893 554 PRINTS PR00110 Alpha-amylase signature 193 204 2.0E-6 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 CLM_1846 75feb3c252e276465fc6f157005c5893 554 PRINTS PR00110 Alpha-amylase signature 316 328 2.0E-6 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 CLM_1846 75feb3c252e276465fc6f157005c5893 554 PRINTS PR00110 Alpha-amylase signature 92 103 2.0E-6 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 CLM_1846 75feb3c252e276465fc6f157005c5893 554 SUPERFAMILY SSF51445 4 473 9.47E-151 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1846 75feb3c252e276465fc6f157005c5893 554 SUPERFAMILY SSF51011 476 552 6.6E-16 T 13-10-2018 CLM_1846 75feb3c252e276465fc6f157005c5893 554 Gene3D G3DSA:3.20.20.80 1 109 3.0E-50 T 13-10-2018 CLM_1846 75feb3c252e276465fc6f157005c5893 554 Pfam PF00128 Alpha amylase, catalytic domain 28 373 3.3E-117 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CLM_1846 75feb3c252e276465fc6f157005c5893 554 Gene3D G3DSA:2.60.40.1180 477 553 2.6E-20 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CLM_1846 75feb3c252e276465fc6f157005c5893 554 Gene3D G3DSA:3.90.400.10 110 169 1.5E-32 T 13-10-2018 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SUPERFAMILY SSF48452 363 454 1.0E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SUPERFAMILY SSF48452 176 337 2.28E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SMART SM00028 421 454 0.087 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SMART SM00028 195 228 0.25 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SMART SM00028 267 300 8.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SMART SM00028 387 420 71.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SMART SM00028 307 340 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Pfam PF00535 Glycosyl transferase family 2 3 122 5.5E-17 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Gene3D G3DSA:1.25.40.10 167 349 4.4E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Gene3D G3DSA:1.25.40.10 362 468 3.9E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 SUPERFAMILY SSF53448 1 141 1.07E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Gene3D G3DSA:3.90.550.10 1 166 1.2E-21 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Pfam PF13181 Tetratricopeptide repeat 311 337 8.4E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Pfam PF13181 Tetratricopeptide repeat 423 452 0.0053 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3092 2c2606808d446f0ebb228cc7a40fc421 473 Pfam PF13181 Tetratricopeptide repeat 197 224 4.6E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 Pfam PF01168 Alanine racemase, N-terminal domain 12 232 1.8E-63 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 262 277 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 205 232 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 279 294 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 300 317 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 66 84 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 127 139 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 162 173 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 356 369 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 PRINTS PR00992 Alanine racemase signature 30 46 9.2E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 TIGRFAM TIGR00492 alr: alanine racemase 6 373 2.0E-123 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 Gene3D G3DSA:3.20.20.10 14 228 6.6E-137 T 13-10-2018 IPR029066 PLP-binding barrel CLM_3860 a9013320cbc819b348fc5ef09741c794 386 SUPERFAMILY SSF50621 239 381 1.29E-53 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 Gene3D G3DSA:2.40.37.10 9 373 6.6E-137 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 SUPERFAMILY SSF51419 12 247 8.34E-66 T 13-10-2018 IPR029066 PLP-binding barrel CLM_3860 a9013320cbc819b348fc5ef09741c794 386 SMART SM01005 246 374 1.4E-72 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 Pfam PF00842 Alanine racemase, C-terminal domain 246 373 9.0E-48 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 35 45 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3860 a9013320cbc819b348fc5ef09741c794 386 Hamap MF_01201 Alanine racemase. 5 374 35.369 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_0286 2ad2745f364df92b47b2a4aa1633c029 136 Gene3D G3DSA:3.10.28.10 1 134 2.9E-18 T 13-10-2018 IPR027434 Homing endonuclease CLM_0286 2ad2745f364df92b47b2a4aa1633c029 136 SUPERFAMILY SSF55608 2 108 6.38E-14 T 13-10-2018 IPR027434 Homing endonuclease CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 591 603 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 SUPERFAMILY SSF55604 429 502 2.62E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 Pfam PF00367 phosphotransferase system, EIIB 432 464 2.7E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 Gene3D G3DSA:3.30.1360.60 425 505 1.3E-28 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 SUPERFAMILY SSF51261 520 672 2.09E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 Pfam PF02378 Phosphotransferase system, EIIC 13 344 1.2E-92 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 404 488 2.7E-21 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 504 2.7E-243 T 13-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 Gene3D G3DSA:2.70.70.10 514 676 5.7E-57 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 528 650 6.4E-51 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_1502 49a96b98bc510bf50eb7033e76eaa236 676 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 530 649 2.2E-45 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 398 45.537 T 13-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 56 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 Pfam PF01479 S4 domain 343 385 1.8E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 Gene3D G3DSA:3.40.50.620 4 221 4.3E-72 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 SUPERFAMILY SSF52374 5 321 2.03E-86 T 13-10-2018 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 5 396 1.1E-116 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 Gene3D G3DSA:1.10.240.10 224 327 2.0E-23 T 13-10-2018 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 SMART SM00363 341 400 1.1E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 Gene3D G3DSA:3.10.290.10 328 397 5.2E-19 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 Pfam PF00579 tRNA synthetases class I (W and Y) 35 322 1.7E-74 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 SUPERFAMILY SSF55174 304 396 8.24E-19 T 13-10-2018 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 2.5E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 2.5E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 2.5E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_1358 c9901573e2cadc422c81f55be24fd0e5 400 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 215 227 2.5E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 SUPERFAMILY SSF51445 54 337 1.17E-21 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 Gene3D G3DSA:2.10.10.20 392 449 2.2E-12 T 13-10-2018 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 Gene3D G3DSA:2.10.10.20 467 527 7.8E-12 T 13-10-2018 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 SMART SM00495 397 441 6.5E-9 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 SMART SM00495 478 522 1.0E-7 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 Gene3D G3DSA:3.20.20.80 50 378 3.9E-93 T 13-10-2018 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 SUPERFAMILY SSF51055 396 447 2.75E-11 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 Pfam PF00704 Glycosyl hydrolases family 18 78 304 3.2E-10 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 CLM_1240 54717ebe56596d1a4857f2db4ca0a55e 527 SUPERFAMILY SSF51055 477 526 2.22E-10 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_0298 5122b4280db50647c215e1af741c8ed5 302 Pfam PF00512 His Kinase A (phospho-acceptor) domain 91 148 1.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0298 5122b4280db50647c215e1af741c8ed5 302 SMART SM00387 195 302 1.6E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0298 5122b4280db50647c215e1af741c8ed5 302 Gene3D G3DSA:1.10.287.130 26 144 1.9E-18 T 13-10-2018 CLM_0298 5122b4280db50647c215e1af741c8ed5 302 SUPERFAMILY SSF47384 81 149 1.12E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0298 5122b4280db50647c215e1af741c8ed5 302 PRINTS PR00344 Bacterial sensor protein C-terminal signature 263 281 1.8E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0298 5122b4280db50647c215e1af741c8ed5 302 PRINTS PR00344 Bacterial sensor protein C-terminal signature 248 258 1.8E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0298 5122b4280db50647c215e1af741c8ed5 302 Gene3D G3DSA:3.30.565.10 155 296 2.1E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0298 5122b4280db50647c215e1af741c8ed5 302 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 196 285 3.8E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0298 5122b4280db50647c215e1af741c8ed5 302 SUPERFAMILY SSF55874 138 284 4.58E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0298 5122b4280db50647c215e1af741c8ed5 302 SMART SM00388 86 149 1.6E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0402 b7304714a1494e5b0ed0d7afea360aa0 169 Pfam PF13302 Acetyltransferase (GNAT) domain 14 146 5.4E-16 T 13-10-2018 IPR000182 GNAT domain CLM_0402 b7304714a1494e5b0ed0d7afea360aa0 169 Gene3D G3DSA:3.40.630.30 1 168 2.5E-25 T 13-10-2018 CLM_0402 b7304714a1494e5b0ed0d7afea360aa0 169 SUPERFAMILY SSF55729 4 155 2.9E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1473 4c8e6c7731c1c4df3be87d81bff4429d 297 Gene3D G3DSA:3.30.1180.10 159 290 9.0E-37 T 13-10-2018 CLM_1473 4c8e6c7731c1c4df3be87d81bff4429d 297 Gene3D G3DSA:2.20.28.50 29 65 1.4E-51 T 13-10-2018 CLM_1473 4c8e6c7731c1c4df3be87d81bff4429d 297 Pfam PF02645 Uncharacterised protein, DegV family COG1307 6 285 3.6E-80 T 13-10-2018 IPR003797 DegV CLM_1473 4c8e6c7731c1c4df3be87d81bff4429d 297 Gene3D G3DSA:3.40.50.10440 6 148 1.4E-51 T 13-10-2018 CLM_1473 4c8e6c7731c1c4df3be87d81bff4429d 297 SUPERFAMILY SSF82549 4 287 4.97E-84 T 13-10-2018 CLM_1473 4c8e6c7731c1c4df3be87d81bff4429d 297 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 6 285 7.2E-95 T 13-10-2018 IPR003797 DegV CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 SUPERFAMILY SSF48008 95 228 1.07E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.1E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 SUPERFAMILY SSF46785 1 76 3.91E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 Pfam PF07729 FCD domain 98 222 3.4E-21 T 13-10-2018 IPR011711 GntR, C-terminal CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 SMART SM00895 98 223 2.2E-17 T 13-10-2018 IPR011711 GntR, C-terminal CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 Gene3D G3DSA:1.20.120.530 96 233 4.9E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 SMART SM00345 14 73 4.8E-23 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1755 cae047e41eaf23c32c70ae545f47a14a 236 Gene3D G3DSA:1.10.10.10 1 73 3.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 465 38.965 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 Pfam PF09190 DALR domain 353 415 2.5E-18 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 Gene3D G3DSA:1.20.120.1910 304 464 5.0E-42 T 13-10-2018 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 464 5.7E-183 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 SUPERFAMILY SSF47323 314 463 1.7E-36 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 17 311 2.1E-135 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 Gene3D G3DSA:3.40.50.620 1 303 1.3E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 SMART SM00840 353 416 3.9E-19 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 SUPERFAMILY SSF52374 2 309 2.49E-102 T 13-10-2018 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 220 241 8.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 8.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 189 207 8.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CLM_3972 1b471d00d891cd76de7a7b77d383bf6f 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 8.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CLM_0976 6b6e23948b0415958eca5a5b616704f5 391 Gene3D G3DSA:3.40.640.10 1 260 2.7E-82 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0976 6b6e23948b0415958eca5a5b616704f5 391 Gene3D G3DSA:3.90.1150.10 262 390 7.5E-28 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0976 6b6e23948b0415958eca5a5b616704f5 391 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 11 382 5.1E-97 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_0976 6b6e23948b0415958eca5a5b616704f5 391 PIRSF PIRSF000390 1 390 1.0E-94 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_0976 6b6e23948b0415958eca5a5b616704f5 391 SUPERFAMILY SSF53383 3 388 6.48E-100 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2639 a67c3093f0166a7c6b515decc3b5241e 414 Pfam PF12571 Phage tail-collar fibre protein 1 150 1.1E-63 T 13-10-2018 IPR022225 Phage tail fibre protein CLM_1538 844356b6e449881e294479d9bacffebf 312 Gene3D G3DSA:3.40.50.1980 23 204 4.2E-57 T 13-10-2018 CLM_1538 844356b6e449881e294479d9bacffebf 312 SUPERFAMILY SSF53807 15 312 2.31E-85 T 13-10-2018 CLM_1538 844356b6e449881e294479d9bacffebf 312 Pfam PF01297 Zinc-uptake complex component A periplasmic 37 309 8.1E-73 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00690 Adhesin family signature 34 52 4.1E-14 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00690 Adhesin family signature 65 78 4.1E-14 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00690 Adhesin family signature 202 223 4.1E-14 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00690 Adhesin family signature 78 95 4.1E-14 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00690 Adhesin family signature 255 273 4.1E-14 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 Gene3D G3DSA:3.40.50.1980 206 312 1.9E-31 T 13-10-2018 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00691 Adhesin B signature 59 77 2.2E-12 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00691 Adhesin B signature 78 97 2.2E-12 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00691 Adhesin B signature 34 55 2.2E-12 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_1538 844356b6e449881e294479d9bacffebf 312 PRINTS PR00691 Adhesin B signature 290 308 2.2E-12 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 Pfam PF02310 B12 binding domain 95 199 4.4E-24 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 Pfam PF02607 B12 binding domain 9 82 1.2E-17 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 TIGRFAM TIGR02370 pyl_corrinoid: methyltransferase cognate corrinoid proteins, Methanosarcina family 11 206 3.0E-65 T 13-10-2018 IPR012741 Methyltransferase cognate corrinoid protein GO:0015948|GO:0031419|GO:0050897 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 SMART SM01018 6 89 1.1E-32 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 Gene3D G3DSA:1.10.1240.10 4 84 1.2E-29 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 SUPERFAMILY SSF47644 6 88 4.97E-24 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 SUPERFAMILY SSF52242 74 217 8.5E-49 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 CLM_1732 795dc072bdb6ddfe2e40a89992831b86 220 Gene3D G3DSA:3.40.50.280 85 219 2.4E-50 T 13-10-2018 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 Gene3D G3DSA:3.40.190.10 399 606 6.4E-107 T 13-10-2018 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 Gene3D G3DSA:1.10.3720.10 7 263 9.0E-57 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 256 7.6E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 SUPERFAMILY SSF53850 294 610 4.35E-84 T 13-10-2018 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 Pfam PF13416 Bacterial extracellular solute-binding protein 309 567 5.0E-33 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 SUPERFAMILY SSF161098 9 258 9.35E-62 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 Gene3D G3DSA:3.40.190.10 297 577 6.4E-107 T 13-10-2018 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 389 405 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 414 428 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 299 315 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 558 584 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 432 451 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 513 532 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 315 336 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 342 356 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 358 371 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0667 b93f3fb51248755ee34a8c10ff8d5e50 614 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 469 488 2.0E-48 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_0531 da480821cee7207049e107c31e111ccb 205 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 200 1.5E-69 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0531 da480821cee7207049e107c31e111ccb 205 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 4 205 27.489 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0531 da480821cee7207049e107c31e111ccb 205 SUPERFAMILY SSF51391 5 201 1.14E-64 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0531 da480821cee7207049e107c31e111ccb 205 Pfam PF02581 Thiamine monophosphate synthase 7 188 7.9E-67 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0531 da480821cee7207049e107c31e111ccb 205 Gene3D G3DSA:3.20.20.70 1 203 1.8E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0338 2d41c1df818fadd63e385506770b5d27 253 Gene3D G3DSA:3.40.50.10490 88 252 2.7E-28 T 13-10-2018 CLM_0338 2d41c1df818fadd63e385506770b5d27 253 Gene3D G3DSA:1.10.10.10 5 76 1.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0338 2d41c1df818fadd63e385506770b5d27 253 Pfam PF01380 SIS domain 118 216 4.1E-12 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_0338 2d41c1df818fadd63e385506770b5d27 253 SUPERFAMILY SSF53697 93 250 6.68E-24 T 13-10-2018 CLM_0338 2d41c1df818fadd63e385506770b5d27 253 SUPERFAMILY SSF46689 13 78 2.69E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0338 2d41c1df818fadd63e385506770b5d27 253 Pfam PF01418 Helix-turn-helix domain, rpiR family 11 72 1.2E-9 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 Gene3D G3DSA:3.50.50.60 3 347 1.1E-120 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 Gene3D G3DSA:3.30.9.10 86 314 1.1E-120 T 13-10-2018 CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 SUPERFAMILY SSF51905 1 371 2.85E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 SUPERFAMILY SSF54373 218 311 7.65E-6 T 13-10-2018 CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 Pfam PF04324 BFD-like [2Fe-2S] binding domain 394 448 1.4E-16 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 Gene3D G3DSA:1.10.10.1100 383 457 7.3E-24 T 13-10-2018 CLM_2451 8c7a5d1070fdef6382486d70c6712322 482 Pfam PF01266 FAD dependent oxidoreductase 3 349 1.1E-67 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CLM_0782 76e3756ba900fe8137f2ddb371ff32be 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0782 76e3756ba900fe8137f2ddb371ff32be 251 Pfam PF00005 ABC transporter 24 176 4.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0782 76e3756ba900fe8137f2ddb371ff32be 251 SUPERFAMILY SSF52540 1 232 3.41E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0782 76e3756ba900fe8137f2ddb371ff32be 251 SMART SM00382 31 224 1.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0782 76e3756ba900fe8137f2ddb371ff32be 251 Gene3D G3DSA:3.40.50.300 1 247 6.4E-57 T 13-10-2018 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 SUPERFAMILY SSF47203 227 378 1.77E-57 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 2.7E-50 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 Gene3D G3DSA:1.20.140.10 235 379 9.4E-54 T 13-10-2018 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 Gene3D G3DSA:1.10.540.10 1 120 4.7E-43 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 PIRSF PIRSF016578 6 118 3.9E-8 T 13-10-2018 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 PIRSF PIRSF016578 126 379 3.1E-16 T 13-10-2018 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 Gene3D G3DSA:2.40.110.10 121 234 6.1E-44 T 13-10-2018 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 9.0E-37 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 SUPERFAMILY SSF56645 2 242 1.13E-87 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CLM_3611 e69520bbdedaacd64cb502687a6aaf63 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 3.3E-25 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CLM_2642 56c1556147b2f1afef58b8c2298ef2fb 135 Pfam PF10934 Protein of unknown function (DUF2634) 27 122 1.2E-32 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 CLM_2642 56c1556147b2f1afef58b8c2298ef2fb 135 SUPERFAMILY SSF160719 39 124 6.67E-10 T 13-10-2018 CLM_2642 56c1556147b2f1afef58b8c2298ef2fb 135 ProDom PD033094 XKDS PHAGE-LIKE PBSX ELEMENT PHAGE LIN1286 RELATED YQBS 26 132 4.0E-26 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 CLM_2642 56c1556147b2f1afef58b8c2298ef2fb 135 Gene3D G3DSA:3.10.450.40 20 132 3.6E-6 T 13-10-2018 CLM_2301 2633357dbed527d023e900a2f3c660e1 209 Pfam PF00239 Resolvase, N terminal domain 2 155 6.1E-26 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CLM_2301 2633357dbed527d023e900a2f3c660e1 209 SUPERFAMILY SSF53041 1 155 4.58E-25 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CLM_2301 2633357dbed527d023e900a2f3c660e1 209 Gene3D G3DSA:3.40.50.1390 1 163 1.3E-27 T 13-10-2018 CLM_2301 2633357dbed527d023e900a2f3c660e1 209 SMART SM00857 2 156 2.4E-29 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CLM_1000 bcf05897f69aed11e18548f2615801c1 102 SUPERFAMILY SSF46785 4 101 5.77E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1000 bcf05897f69aed11e18548f2615801c1 102 Pfam PF01638 HxlR-like helix-turn-helix 16 101 2.0E-33 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type CLM_1000 bcf05897f69aed11e18548f2615801c1 102 Gene3D G3DSA:1.10.10.10 2 102 1.9E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2540 65b799edac93aecd28cb59adb680efe3 331 SUPERFAMILY SSF56349 56 322 5.89E-57 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_2540 65b799edac93aecd28cb59adb680efe3 331 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 70 135 1.5E-9 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CLM_2540 65b799edac93aecd28cb59adb680efe3 331 Gene3D G3DSA:1.10.443.10 154 331 5.8E-52 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_2540 65b799edac93aecd28cb59adb680efe3 331 Gene3D G3DSA:1.10.150.130 50 153 2.4E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_2540 65b799edac93aecd28cb59adb680efe3 331 Pfam PF00589 Phage integrase family 159 319 3.4E-35 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_1157 1aa645c8e3cb39747f5ecd5f1c72173f 201 Pfam PF13353 4Fe-4S single cluster domain 14 148 1.7E-36 T 13-10-2018 CLM_1157 1aa645c8e3cb39747f5ecd5f1c72173f 201 Gene3D G3DSA:3.20.20.70 2 181 1.8E-33 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1157 1aa645c8e3cb39747f5ecd5f1c72173f 201 Pfam PF04055 Radical SAM superfamily 25 109 4.5E-7 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_1157 1aa645c8e3cb39747f5ecd5f1c72173f 201 PIRSF PIRSF000368 1 166 1.2E-46 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CLM_1157 1aa645c8e3cb39747f5ecd5f1c72173f 201 SUPERFAMILY SSF102114 26 102 1.06E-10 T 13-10-2018 CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 SUPERFAMILY SSF53041 4 153 6.02E-34 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 Pfam PF13408 Recombinase zinc beta ribbon domain 328 393 5.6E-13 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 SMART SM00857 4 153 4.3E-49 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 Gene3D G3DSA:3.40.50.1390 1 135 7.0E-34 T 13-10-2018 CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 Pfam PF00239 Resolvase, N terminal domain 4 153 3.8E-35 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 Gene3D G3DSA:1.10.10.2600 137 312 1.2E-10 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily CLM_2578 d31a4f5fbc24c317a1dc25cf1f905625 540 Pfam PF07508 Recombinase 186 309 1.2E-23 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SUPERFAMILY SSF48452 71 219 2.39E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 Gene3D G3DSA:1.25.40.10 69 181 1.6E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 277 310 10.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 395 428 90.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 75 108 58.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 155 188 170.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 197 230 15.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 237 270 23.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00028 355 388 140.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 Pfam PF12844 Helix-turn-helix domain 7 68 5.8E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 Gene3D G3DSA:1.25.40.10 189 429 9.4E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 Gene3D G3DSA:1.10.260.40 4 68 1.3E-16 T 13-10-2018 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SUPERFAMILY SSF48452 346 429 1.95E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 Pfam PF13181 Tetratricopeptide repeat 197 219 0.014 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 Pfam PF13424 Tetratricopeptide repeat 237 309 3.4E-9 T 13-10-2018 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SMART SM00530 9 63 9.0E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SUPERFAMILY SSF47413 4 68 1.1E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0474 56a4c79841a82b24e76ac91a2eeeb1f1 434 SUPERFAMILY SSF48452 176 351 3.03E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Pfam PF00005 ABC transporter 789 860 4.4E-5 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Gene3D G3DSA:3.30.190.20 131 241 4.5E-253 T 13-10-2018 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 SUPERFAMILY SSF52540 614 914 2.5E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Gene3D G3DSA:3.40.50.300 6 596 4.5E-253 T 13-10-2018 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Gene3D G3DSA:1.20.1580.10 693 830 2.4E-146 T 13-10-2018 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 SUPERFAMILY SSF52540 10 571 1.52E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Gene3D G3DSA:1.20.1580.10 91 494 4.5E-253 T 13-10-2018 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Hamap MF_00205 UvrABC system protein A [uvrA]. 2 940 22.874 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Gene3D G3DSA:3.40.50.300 614 936 2.4E-146 T 13-10-2018 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 Gene3D G3DSA:1.10.8.280 286 405 4.5E-253 T 13-10-2018 CLM_3848 4fe27bdb35e0862f343c90c9489a7467 940 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 924 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 302 3.0E-108 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 SUPERFAMILY SSF53686 1 299 8.91E-95 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 TIGRFAM TIGR01139 cysK: cysteine synthase A 7 302 7.4E-107 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 Gene3D G3DSA:3.40.50.1100 9 298 2.8E-116 T 13-10-2018 CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 Gene3D G3DSA:3.40.50.1100 45 146 2.8E-116 T 13-10-2018 CLM_0866 434a81a031213fdd68dfc4fbebc23294 302 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 291 2.5E-68 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_1542 eb0e974e9d15df6b5169c01d294bb4a1 335 Gene3D G3DSA:3.40.190.10 48 330 4.4E-98 T 13-10-2018 CLM_1542 eb0e974e9d15df6b5169c01d294bb4a1 335 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 72 208 2.8E-10 T 13-10-2018 CLM_1542 eb0e974e9d15df6b5169c01d294bb4a1 335 Gene3D G3DSA:3.40.190.10 120 229 4.4E-98 T 13-10-2018 CLM_1542 eb0e974e9d15df6b5169c01d294bb4a1 335 SUPERFAMILY SSF53850 46 317 4.15E-36 T 13-10-2018 CLM_1542 eb0e974e9d15df6b5169c01d294bb4a1 335 PIRSF PIRSF027386 1 334 4.6E-127 T 13-10-2018 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type CLM_2399 4f2f7b282470d34e3134c4ea3151b7b5 410 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 41 400 3.0E-72 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2399 4f2f7b282470d34e3134c4ea3151b7b5 410 Gene3D G3DSA:3.40.50.11890 33 177 1.1E-9 T 13-10-2018 CLM_2399 4f2f7b282470d34e3134c4ea3151b7b5 410 Gene3D G3DSA:3.40.50.11900 296 407 3.5E-5 T 13-10-2018 CLM_2399 4f2f7b282470d34e3134c4ea3151b7b5 410 Gene3D G3DSA:1.20.1270.370 21 197 1.1E-9 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 Pfam PF00344 SecY translocase 69 408 4.5E-109 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 SUPERFAMILY SSF103491 1 415 8.89E-119 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 419 1.3E-115 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 Gene3D G3DSA:1.10.3370.10 1 420 1.9E-157 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 109 132 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 360 378 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 68 88 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 143 168 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 261 280 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 393 411 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 305 327 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 169 192 1.6E-83 T 13-10-2018 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 ProSitePatterns PS00756 Protein secY signature 2. 162 179 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 PIRSF PIRSF004557 1 425 5.2E-119 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 ProSitePatterns PS00755 Protein secY signature 1. 69 88 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3928 803beb419a7ebdb62adeef407b43050d 425 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 424 28.723 T 13-10-2018 IPR026593 Protein translocase subunit SecY CLM_3813 8f519500bfc450372a988b0f08213c1a 398 Gene3D G3DSA:3.40.50.150 105 329 1.2E-63 T 13-10-2018 CLM_3813 8f519500bfc450372a988b0f08213c1a 398 Pfam PF01861 Protein of unknown function DUF43 114 307 8.0E-39 T 13-10-2018 IPR002723 N(4)-bis(aminopropyl)spermidine synthase, C-terminal CLM_3813 8f519500bfc450372a988b0f08213c1a 398 SUPERFAMILY SSF53335 186 273 1.5E-6 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 SMART SM00994 9 48 1.2E-23 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Pfam PF06689 ClpX C4-type zinc finger 11 47 8.6E-21 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 387 4.1E-16 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 SMART SM01086 311 404 8.8E-31 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 2 403 4.9E-207 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 409 53.207 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 SUPERFAMILY SSF57716 10 45 2.0E-11 T 13-10-2018 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 SUPERFAMILY SSF52540 60 397 1.28E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 SMART SM00382 107 260 7.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Gene3D G3DSA:3.40.50.300 53 309 7.3E-110 T 13-10-2018 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Gene3D G3DSA:3.30.50.30 2 49 2.6E-22 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Gene3D G3DSA:1.10.8.60 310 412 2.9E-38 T 13-10-2018 CLM_3642 f9c9f28f90b3bc5c032bf58645bb709f 429 Pfam PF07724 AAA domain (Cdc48 subfamily) 107 305 6.3E-50 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_0296 5d9a3f8ee81b94beb5aa44fe06c44c3c 306 SUPERFAMILY SSF52540 3 228 4.47E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0296 5d9a3f8ee81b94beb5aa44fe06c44c3c 306 Gene3D G3DSA:3.40.50.300 1 238 1.2E-57 T 13-10-2018 CLM_0296 5d9a3f8ee81b94beb5aa44fe06c44c3c 306 SMART SM00382 30 214 1.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0296 5d9a3f8ee81b94beb5aa44fe06c44c3c 306 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0296 5d9a3f8ee81b94beb5aa44fe06c44c3c 306 Pfam PF00005 ABC transporter 21 162 9.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1702 560b9f04d0f38a60915378a58fe5737b 223 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 14 218 4.2E-66 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CLM_1702 560b9f04d0f38a60915378a58fe5737b 223 SUPERFAMILY SSF51419 3 216 3.66E-71 T 13-10-2018 IPR029066 PLP-binding barrel CLM_1702 560b9f04d0f38a60915378a58fe5737b 223 Gene3D G3DSA:3.20.20.10 1 222 6.5E-78 T 13-10-2018 IPR029066 PLP-binding barrel CLM_1702 560b9f04d0f38a60915378a58fe5737b 223 Pfam PF01168 Alanine racemase, N-terminal domain 3 218 3.7E-24 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1702 560b9f04d0f38a60915378a58fe5737b 223 PIRSF PIRSF004848 1 223 7.5E-78 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CLM_1702 560b9f04d0f38a60915378a58fe5737b 223 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 5 217 29.001 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CLM_1808 c073d930338de056072df4becd1a69e8 434 Pfam PF00815 Histidinol dehydrogenase 21 429 9.6E-179 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 SUPERFAMILY SSF53720 26 431 3.14E-85 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CLM_1808 c073d930338de056072df4becd1a69e8 434 PIRSF PIRSF000099 2 432 2.7E-178 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 34 428 4.6E-172 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 Gene3D G3DSA:3.40.50.1980 235 351 5.8E-130 T 13-10-2018 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 202 227 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 253 272 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 322 347 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 231 252 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 172 198 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 PRINTS PR00083 Histidinol dehydrogenase signature 363 381 2.3E-91 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 231 263 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 5 429 43.82 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CLM_1808 c073d930338de056072df4becd1a69e8 434 Gene3D G3DSA:3.40.50.1980 32 233 5.8E-130 T 13-10-2018 CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 Gene3D G3DSA:3.90.1530.30 19 82 1.9E-26 T 13-10-2018 CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 Gene3D G3DSA:1.10.10.2830 83 197 1.9E-34 T 13-10-2018 CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 TIGRFAM TIGR04285 nucleoid_noc: nucleoid occlusion protein 5 258 7.5E-96 T 13-10-2018 IPR023705 Nucleoid occlusion protein CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 2 181 1.3E-54 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 SUPERFAMILY SSF110849 5 137 3.82E-33 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 Pfam PF02195 ParB-like nuclease domain 7 95 7.0E-25 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CLM_4145 e7b69d28e4c44cd2936321f7eec9d712 259 SMART SM00470 6 96 5.8E-31 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Pfam PF02436 Conserved carboxylase domain 823 1022 1.7E-75 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SUPERFAMILY SSF89000 828 1004 7.45E-59 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Pfam PF00289 Biotin carboxylase, N-terminal domain 4 113 1.7E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Gene3D G3DSA:3.10.600.10 505 1055 4.3E-274 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SUPERFAMILY SSF51246 340 458 1.36E-36 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Pfam PF00364 Biotin-requiring enzyme 1078 1143 1.1E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SUPERFAMILY SSF51569 520 831 1.61E-78 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1100 1117 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Gene3D G3DSA:1.10.10.2790 938 973 4.3E-274 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Gene3D G3DSA:2.40.50.100 1068 1144 2.7E-24 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 6 1144 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Pfam PF02785 Biotin carboxylase C-terminal domain 345 453 8.1E-32 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Gene3D G3DSA:3.20.20.70 508 812 4.3E-274 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Gene3D G3DSA:1.10.472.90 813 937 4.3E-274 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SUPERFAMILY SSF56059 86 331 2.47E-68 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SUPERFAMILY SSF52440 3 116 6.4E-45 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 3.2E-78 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SMART SM00878 345 452 1.4E-50 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Pfam PF00682 HMGL-like 529 801 7.1E-32 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 SUPERFAMILY SSF51230 1067 1144 5.76E-22 T 13-10-2018 IPR011053 Single hybrid motif CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 Gene3D G3DSA:3.30.470.130 1 460 2.0E-199 T 13-10-2018 CLM_3746 de52364b9b21c4b4076b81518bf3507f 1144 PIRSF PIRSF001594 1 1144 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CLM_2355 16760f89e12dbcaebe79cb48d196e89a 346 Gene3D G3DSA:3.40.50.720 155 295 2.0E-64 T 13-10-2018 CLM_2355 16760f89e12dbcaebe79cb48d196e89a 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 136 7.2E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CLM_2355 16760f89e12dbcaebe79cb48d196e89a 346 Pfam PF16912 Glucose dehydrogenase C-terminus 149 345 3.4E-12 T 13-10-2018 IPR031640 Glucose dehydrogenase, C-terminal KEGG: 00030+1.1.1.47 CLM_2355 16760f89e12dbcaebe79cb48d196e89a 346 SUPERFAMILY SSF50129 6 180 1.89E-32 T 13-10-2018 IPR011032 GroES-like superfamily CLM_2355 16760f89e12dbcaebe79cb48d196e89a 346 SUPERFAMILY SSF51735 143 311 7.21E-14 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2355 16760f89e12dbcaebe79cb48d196e89a 346 Gene3D G3DSA:3.90.180.10 33 336 2.0E-64 T 13-10-2018 CLM_0281 7ba27de00822153f4e21cf755967fad7 77 Pfam PF03840 Preprotein translocase SecG subunit 6 74 9.5E-20 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CLM_0281 7ba27de00822153f4e21cf755967fad7 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 75 6.6E-22 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CLM_0281 7ba27de00822153f4e21cf755967fad7 77 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.8E-5 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CLM_0281 7ba27de00822153f4e21cf755967fad7 77 PRINTS PR01651 Protein-export SecG membrane protein signature 56 77 2.8E-5 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CLM_0281 7ba27de00822153f4e21cf755967fad7 77 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.8E-5 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 Gene3D G3DSA:3.40.50.2300 2 123 2.0E-40 T 13-10-2018 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 SUPERFAMILY SSF46894 134 229 4.82E-30 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 SMART SM00862 153 229 4.3E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 3.1E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 SMART SM00448 5 115 1.1E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 Pfam PF00072 Response regulator receiver domain 7 116 6.4E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1197 333575af6463d5b55c17fef739bdb98e 233 SUPERFAMILY SSF52172 5 124 1.11E-42 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1197 333575af6463d5b55c17fef739bdb98e 233 Gene3D G3DSA:1.10.10.10 124 232 4.1E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0351 5d92d957920935b6bb927ec5f903370f 334 Gene3D G3DSA:3.40.1190.20 1 334 5.5E-106 T 13-10-2018 IPR029056 Ribokinase-like CLM_0351 5d92d957920935b6bb927ec5f903370f 334 Pfam PF00294 pfkB family carbohydrate kinase 18 306 1.0E-34 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CLM_0351 5d92d957920935b6bb927ec5f903370f 334 SUPERFAMILY SSF53613 1 325 5.17E-68 T 13-10-2018 IPR029056 Ribokinase-like CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 Gene3D G3DSA:1.20.970.10 1 67 1.4E-28 T 13-10-2018 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 SMART SM00941 345 419 2.3E-27 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 13-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 1.1E-20 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 PIRSF PIRSF000478 1 433 3.9E-162 T 13-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 Pfam PF00591 Glycosyl transferase family, a/b domain 78 305 2.7E-41 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 SUPERFAMILY SSF52418 69 329 3.4E-90 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 3 418 8.6E-179 T 13-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 Gene3D G3DSA:3.90.1170.30 331 419 9.4E-146 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 SUPERFAMILY SSF54680 332 433 1.96E-27 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 Gene3D G3DSA:3.40.1030.10 77 330 9.4E-146 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 SUPERFAMILY SSF47648 1 69 2.09E-21 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_2024 75b06591f89ad53f19168c59d6e4480e 434 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 345 418 1.7E-23 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 Gene3D G3DSA:3.40.250.10 311 460 2.7E-42 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 SUPERFAMILY SSF52821 42 162 9.43E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 SMART SM00450 171 295 1.5E-18 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 SMART SM00450 42 159 2.2E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 SMART SM00450 321 450 1.6E-13 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 SUPERFAMILY SSF52821 172 349 8.12E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 Pfam PF00581 Rhodanese-like domain 325 446 9.9E-14 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 Pfam PF00581 Rhodanese-like domain 198 291 2.0E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 Pfam PF00581 Rhodanese-like domain 45 155 3.3E-12 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 SUPERFAMILY SSF52821 315 458 4.58E-30 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 Gene3D G3DSA:3.40.250.10 39 158 8.1E-25 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1297 ed7bb3abb299fd81a7f393284f38983d 460 Gene3D G3DSA:3.40.250.10 164 308 6.5E-40 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 SMART SM00418 21 100 2.6E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 Pfam PF01022 Bacterial regulatory protein, arsR family 28 75 2.8E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 2.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 2.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 2.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 SUPERFAMILY SSF46785 21 98 1.05E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0994 0daf8e9c1d9d1c0baa7188fc88001d1c 108 Gene3D G3DSA:1.10.10.10 7 105 2.8E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3967 e1958853d2c83d24875a4748532daa7c 213 PIRSF PIRSF002939 2 213 1.2E-109 T 13-10-2018 IPR016371 RNA polymerase sigma-H factor GO:0003677|GO:0006351|GO:0016987 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 178 205 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 210 6.1E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 Pfam PF08281 Sigma-70, region 4 171 206 1.6E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 TIGRFAM TIGR02859 spore_sigH: RNA polymerase sigma-H factor 15 211 1.5E-114 T 13-10-2018 IPR014218 RNA polymerase sigma-H type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 SUPERFAMILY SSF88946 19 106 4.32E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 Pfam PF04542 Sigma-70 region 2 38 106 1.1E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3967 e1958853d2c83d24875a4748532daa7c 213 SUPERFAMILY SSF88659 124 212 2.35E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_0953 d5cbee6e9d8be605f53691f0ac10e4f5 389 SUPERFAMILY SSF51338 2 385 2.31E-20 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_0953 d5cbee6e9d8be605f53691f0ac10e4f5 389 Gene3D G3DSA:2.30.40.10 5 379 1.5E-122 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_0953 d5cbee6e9d8be605f53691f0ac10e4f5 389 Gene3D G3DSA:3.20.20.140 56 345 1.5E-122 T 13-10-2018 CLM_0953 d5cbee6e9d8be605f53691f0ac10e4f5 389 SUPERFAMILY SSF51556 55 348 5.75E-43 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_0953 d5cbee6e9d8be605f53691f0ac10e4f5 389 Pfam PF01979 Amidohydrolase family 53 381 2.7E-13 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_0173 538c4c3d92bd741e7a9a88048aba4a79 142 Gene3D G3DSA:2.40.128.20 1 141 2.5E-35 T 13-10-2018 IPR012674 Calycin CLM_0173 538c4c3d92bd741e7a9a88048aba4a79 142 Pfam PF09148 Domain of unknown function (DUF1934) 10 134 5.9E-36 T 13-10-2018 IPR015231 Protein of unknown function DUF1934 CLM_0173 538c4c3d92bd741e7a9a88048aba4a79 142 SUPERFAMILY SSF50814 7 137 6.5E-30 T 13-10-2018 IPR012674 Calycin CLM_3149 e780195e9b817420ab365c5d21bc6d7f 345 SUPERFAMILY SSF52317 2 170 1.83E-41 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_3149 e780195e9b817420ab365c5d21bc6d7f 345 Pfam PF02016 LD-carboxypeptidase 16 330 1.0E-65 T 13-10-2018 IPR003507 Peptidase family S66 CLM_3149 e780195e9b817420ab365c5d21bc6d7f 345 SUPERFAMILY SSF141986 176 336 6.67E-26 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLM_3149 e780195e9b817420ab365c5d21bc6d7f 345 PIRSF PIRSF028757 4 344 6.4E-63 T 13-10-2018 IPR003507 Peptidase family S66 CLM_3149 e780195e9b817420ab365c5d21bc6d7f 345 Gene3D G3DSA:3.50.30.60 168 345 1.2E-54 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLM_3149 e780195e9b817420ab365c5d21bc6d7f 345 Gene3D G3DSA:3.40.50.10740 2 167 9.4E-57 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CLM_1739 6db283bcc35cbe16178e13b512ccc465 339 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 317 2.6E-56 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CLM_1739 6db283bcc35cbe16178e13b512ccc465 339 Gene3D G3DSA:3.20.20.70 1 339 4.3E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1739 6db283bcc35cbe16178e13b512ccc465 339 SUPERFAMILY SSF51395 1 338 9.16E-83 T 13-10-2018 CLM_0181 2c74158fe8559d92d8a198055e073853 283 SUPERFAMILY SSF53335 13 280 1.3E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0181 2c74158fe8559d92d8a198055e073853 283 Gene3D G3DSA:1.10.8.10 3 81 2.1E-17 T 13-10-2018 CLM_0181 2c74158fe8559d92d8a198055e073853 283 Gene3D G3DSA:3.40.50.150 82 283 5.4E-58 T 13-10-2018 CLM_0181 2c74158fe8559d92d8a198055e073853 283 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 278 9.2E-86 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CLM_0181 2c74158fe8559d92d8a198055e073853 283 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 116 130 5.9E-6 T 13-10-2018 CLM_0181 2c74158fe8559d92d8a198055e073853 283 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 195 5.9E-6 T 13-10-2018 CLM_0181 2c74158fe8559d92d8a198055e073853 283 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 222 246 5.9E-6 T 13-10-2018 CLM_0181 2c74158fe8559d92d8a198055e073853 283 Pfam PF05175 Methyltransferase small domain 104 196 4.4E-14 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CLM_0181 2c74158fe8559d92d8a198055e073853 283 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 282 42.338 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CLM_0181 2c74158fe8559d92d8a198055e073853 283 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CLM_0181 2c74158fe8559d92d8a198055e073853 283 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 281 1.2E-68 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CLM_3168 0ccb67e1197bf26d22c7b6f15176743d 130 Gene3D G3DSA:1.20.120.20 27 130 3.9E-8 T 13-10-2018 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Pfam PF02954 Bacterial regulatory protein, Fis family 599 640 8.6E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Gene3D G3DSA:3.40.50.300 323 504 5.3E-65 T 13-10-2018 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 606 623 2.3E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 623 643 2.3E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 357 370 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 SUPERFAMILY SSF52540 333 578 2.08E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Gene3D G3DSA:1.10.10.60 580 642 6.5E-16 T 13-10-2018 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Gene3D G3DSA:3.30.450.40 15 202 1.5E-59 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Gene3D G3DSA:1.10.8.60 505 579 2.6E-23 T 13-10-2018 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 547 556 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Gene3D G3DSA:3.30.450.20 218 322 6.5E-11 T 13-10-2018 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 SUPERFAMILY SSF55781 60 199 3.47E-6 T 13-10-2018 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 Pfam PF00158 Sigma-54 interaction domain 333 500 6.7E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 SMART SM00382 353 498 3.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1869 dd23e2cc7f8457322a93414980756c62 650 SUPERFAMILY SSF46689 547 642 2.42E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1869 dd23e2cc7f8457322a93414980756c62 650 SUPERFAMILY SSF55785 207 296 9.9E-5 T 13-10-2018 IPR035965 PAS domain superfamily CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 SUPERFAMILY SSF54211 79 158 1.69E-25 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 162 9.0E-63 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 Gene3D G3DSA:3.30.230.10 73 165 1.4E-33 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 ProSitePatterns PS00585 Ribosomal protein S5 signature. 27 59 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 SUPERFAMILY SSF54768 7 74 1.67E-23 T 13-10-2018 CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 162 33.14 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 156 2.7E-30 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 Gene3D G3DSA:3.30.160.20 1 72 1.5E-31 T 13-10-2018 CLM_3931 0410bc51f8b24844f239e1962a7c9fa9 165 Pfam PF00333 Ribosomal protein S5, N-terminal domain 10 73 1.5E-30 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 Gene3D G3DSA:3.40.50.10490 2 221 1.8E-82 T 13-10-2018 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 188 205 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 5 298 42.355 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 Gene3D G3DSA:1.10.8.1080 222 300 6.9E-26 T 13-10-2018 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 SUPERFAMILY SSF53697 8 250 3.78E-73 T 13-10-2018 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 Pfam PF13580 SIS domain 40 168 3.0E-7 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_1520 036d2e0e7f92575ab7d4ef29a21ba5df 302 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 9 298 3.6E-129 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 SUPERFAMILY SSF101473 2 200 1.7E-47 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 SMART SM01121 230 541 7.3E-187 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 11 541 1.6E-213 T 13-10-2018 IPR019986 DAK2 domain-containing protein YloV CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 Pfam PF13684 Dihydroxyacetone kinase family 230 541 1.4E-128 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 Pfam PF02734 DAK2 domain 36 198 1.4E-45 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 Gene3D G3DSA:1.25.40.340 6 199 3.4E-13 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_2796 4cc3263df9a57716dccc299c117bdd91 541 SMART SM01120 36 199 8.0E-72 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_1158 6424036c48326c1081c3e81403dae450 557 SUPERFAMILY SSF52540 250 498 1.7E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1158 6424036c48326c1081c3e81403dae450 557 Gene3D G3DSA:1.10.8.60 417 496 2.3E-11 T 13-10-2018 CLM_1158 6424036c48326c1081c3e81403dae450 557 Gene3D G3DSA:3.40.50.300 242 415 5.7E-38 T 13-10-2018 CLM_1158 6424036c48326c1081c3e81403dae450 557 SUPERFAMILY SSF52540 82 232 3.55E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1158 6424036c48326c1081c3e81403dae450 557 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 287 415 3.2E-28 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_1158 6424036c48326c1081c3e81403dae450 557 SMART SM00382 283 418 4.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 Pfam PF00512 His Kinase A (phospho-acceptor) domain 358 425 1.1E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 SUPERFAMILY SSF47384 345 425 7.06E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 SUPERFAMILY SSF55785 203 328 1.79E-9 T 13-10-2018 IPR035965 PAS domain superfamily CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 580 5.6E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 Gene3D G3DSA:3.30.450.20 215 328 4.7E-13 T 13-10-2018 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 SMART SM00388 356 425 1.8E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 Gene3D G3DSA:3.30.565.10 428 587 7.1E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 216 335 2.4E-10 T 13-10-2018 IPR000014 PAS domain CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 Gene3D G3DSA:1.10.287.130 347 427 9.8E-21 T 13-10-2018 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 SMART SM00387 471 583 1.9E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 SUPERFAMILY SSF55874 414 581 7.73E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 522 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 561 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 536 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0408 df22aad0063cc25f29eb613ec29a2d03 617 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 580 7.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2203 b63d7843dbf22672103065aa0e930903 521 SMART SM00534 329 515 6.7E-11 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_2203 b63d7843dbf22672103065aa0e930903 521 SMART SM00533 49 320 0.01 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CLM_2203 b63d7843dbf22672103065aa0e930903 521 Gene3D G3DSA:3.40.50.300 296 520 2.3E-49 T 13-10-2018 CLM_2203 b63d7843dbf22672103065aa0e930903 521 Pfam PF00488 MutS domain V 333 517 9.4E-26 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_2203 b63d7843dbf22672103065aa0e930903 521 SUPERFAMILY SSF48334 55 285 1.11E-6 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_2203 b63d7843dbf22672103065aa0e930903 521 SUPERFAMILY SSF52540 296 518 4.13E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3729 87039f98929685912d211cffe125bc84 484 SUPERFAMILY SSF54631 85 202 1.01E-29 T 13-10-2018 CLM_3729 87039f98929685912d211cffe125bc84 484 SMART SM00116 96 143 1.1E-9 T 13-10-2018 IPR000644 CBS domain CLM_3729 87039f98929685912d211cffe125bc84 484 SMART SM00116 156 204 7.9E-9 T 13-10-2018 IPR000644 CBS domain CLM_3729 87039f98929685912d211cffe125bc84 484 Gene3D G3DSA:3.20.20.70 1 482 1.9E-223 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3729 87039f98929685912d211cffe125bc84 484 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 469 4.2E-165 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CLM_3729 87039f98929685912d211cffe125bc84 484 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 482 85.188 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CLM_3729 87039f98929685912d211cffe125bc84 484 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 449 3.6E-199 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CLM_3729 87039f98929685912d211cffe125bc84 484 SUPERFAMILY SSF51412 2 473 2.09E-129 T 13-10-2018 CLM_3729 87039f98929685912d211cffe125bc84 484 SMART SM01240 7 469 0.0 T 13-10-2018 CLM_3729 87039f98929685912d211cffe125bc84 484 PIRSF PIRSF000130 1 484 9.8E-213 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CLM_3729 87039f98929685912d211cffe125bc84 484 Pfam PF00571 CBS domain 149 199 9.3E-10 T 13-10-2018 IPR000644 CBS domain CLM_3729 87039f98929685912d211cffe125bc84 484 Pfam PF00571 CBS domain 96 139 3.4E-10 T 13-10-2018 IPR000644 CBS domain CLM_3729 87039f98929685912d211cffe125bc84 484 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 13-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 SUPERFAMILY SSF57802 1 51 2.69E-23 T 13-10-2018 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 PIRSF PIRSF000071 1 52 3.1E-27 T 13-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 Gene3D G3DSA:2.20.28.10 1 52 7.2E-28 T 13-10-2018 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 Pfam PF00301 Rubredoxin 3 49 9.0E-25 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 PRINTS PR00163 Rubredoxin signature 33 49 4.3E-12 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CLM_3484 f8e3372bb34a85a6d66ee101b59028dd 52 PRINTS PR00163 Rubredoxin signature 3 19 4.3E-12 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Pfam PF00271 Helicase conserved C-terminal domain 231 339 4.0E-33 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 SUPERFAMILY SSF52540 73 361 1.8E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Pfam PF00270 DEAD/DEAH box helicase 29 196 1.3E-53 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Pfam PF03880 DbpA RNA binding domain 448 519 7.1E-20 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 SMART SM00490 259 340 1.5E-33 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Gene3D G3DSA:3.30.70.330 447 522 4.3E-14 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Gene3D G3DSA:3.40.50.300 1 211 1.5E-76 T 13-10-2018 CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Hamap MF_01493 DEAD-box ATP-dependent RNA helicase CshA [cshA]. 4 523 42.571 T 13-10-2018 IPR030880 DEAD-box ATP-dependent RNA helicase CshA GO:0004004|GO:0005524|GO:0010501 CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 SMART SM00487 23 223 6.9E-61 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_3166 872b0b32cc6ee9fb0418ef19c44baaf6 524 Gene3D G3DSA:3.40.50.300 215 446 1.7E-58 T 13-10-2018 CLM_1933 e563379f72467571729560f220e7b9ee 526 SUPERFAMILY SSF52540 296 512 1.5E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1933 e563379f72467571729560f220e7b9ee 526 Pfam PF12848 ABC transporter 224 307 9.9E-21 T 13-10-2018 IPR032781 ABC-transporter extension domain CLM_1933 e563379f72467571729560f220e7b9ee 526 Pfam PF00005 ABC transporter 335 466 1.3E-10 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1933 e563379f72467571729560f220e7b9ee 526 Pfam PF00005 ABC transporter 18 184 6.6E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1933 e563379f72467571729560f220e7b9ee 526 Gene3D G3DSA:3.40.50.300 1 279 9.5E-61 T 13-10-2018 CLM_1933 e563379f72467571729560f220e7b9ee 526 SUPERFAMILY SSF52540 2 254 5.34E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1933 e563379f72467571729560f220e7b9ee 526 SMART SM00382 26 228 2.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1933 e563379f72467571729560f220e7b9ee 526 Gene3D G3DSA:3.40.50.300 282 526 9.8E-38 T 13-10-2018 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 ProSitePatterns PS00674 AAA-protein family signature. 298 316 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 Pfam PF01434 Peptidase family M41 389 597 9.6E-79 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 SUPERFAMILY SSF52540 151 398 1.97E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4010 3bab7d41e63fdc15814829c46262944f 601 SUPERFAMILY SSF140990 409 600 8.11E-72 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 Gene3D G3DSA:3.40.50.300 146 327 1.3E-71 T 13-10-2018 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 195 326 9.3E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 Gene3D G3DSA:1.20.58.760 409 601 3.5E-75 T 13-10-2018 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 601 37.687 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 106 598 6.3E-237 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CLM_4010 3bab7d41e63fdc15814829c46262944f 601 SMART SM00382 191 330 1.1E-26 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_4010 3bab7d41e63fdc15814829c46262944f 601 Gene3D G3DSA:1.10.8.60 329 406 1.7E-28 T 13-10-2018 CLM_4047 07c74e762262de9d65217c55ee6a405d 310 SUPERFAMILY SSF102114 10 296 4.58E-51 T 13-10-2018 CLM_4047 07c74e762262de9d65217c55ee6a405d 310 SMART SM00729 26 253 1.1E-40 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_4047 07c74e762262de9d65217c55ee6a405d 310 Pfam PF04055 Radical SAM superfamily 46 208 7.9E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_4047 07c74e762262de9d65217c55ee6a405d 310 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 10 308 6.0E-118 T 13-10-2018 IPR005911 Protein YhcC-like GO:0051536 CLM_4047 07c74e762262de9d65217c55ee6a405d 310 Pfam PF16199 Radical_SAM C-terminal domain 214 298 2.0E-27 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 CLM_4047 07c74e762262de9d65217c55ee6a405d 310 Gene3D G3DSA:3.80.30.20 44 242 4.2E-18 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3542 180ee0ccc436da8499d096424659a1ea 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 1.0E-21 T 13-10-2018 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.662 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 Gene3D G3DSA:1.10.720.90 2 55 1.6E-21 T 13-10-2018 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 Pfam PF00453 Ribosomal protein L20 3 109 3.3E-47 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.7E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.7E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.7E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.6E-48 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 Gene3D G3DSA:1.10.1900.20 56 119 1.2E-29 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3542 180ee0ccc436da8499d096424659a1ea 119 SUPERFAMILY SSF74731 3 117 9.42E-48 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 Pfam PF00717 Peptidase S24-like 448 515 5.3E-13 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 SUPERFAMILY SSF51306 407 529 1.46E-27 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 SUPERFAMILY SSF52540 2 260 3.7E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 Gene3D G3DSA:3.40.50.300 194 277 6.5E-6 T 13-10-2018 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 445 455 2.7E-5 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 456 467 2.7E-5 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 484 496 2.7E-5 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 273 1.9E-5 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 Gene3D G3DSA:2.10.109.10 414 530 6.6E-36 T 13-10-2018 CLM_1055 48b3754e18994e25a6acbb6ddce057ee 531 Gene3D G3DSA:3.40.50.300 1 173 1.7E-8 T 13-10-2018 CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 SMART SM00866 97 238 3.4E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 Gene3D G3DSA:3.40.1410.10 80 243 1.0E-44 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 SUPERFAMILY SSF64288 64 243 1.88E-45 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 Gene3D G3DSA:1.10.10.10 11 79 1.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 Pfam PF07702 UTRA domain 98 238 9.5E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 76 1.1E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 SMART SM00345 17 76 1.1E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 SUPERFAMILY SSF46785 6 85 1.73E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 2.0E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3199 c247f9d84db112344ce688bfd5384e5f 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 2.0E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0504 c84759649e61deb7931b71b173d57373 281 Pfam PF02569 Pantoate-beta-alanine ligase 3 277 8.7E-106 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CLM_0504 c84759649e61deb7931b71b173d57373 281 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 79 3.8E-10 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CLM_0504 c84759649e61deb7931b71b173d57373 281 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 278 8.8E-106 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CLM_0504 c84759649e61deb7931b71b173d57373 281 SUPERFAMILY SSF52374 1 279 2.45E-106 T 13-10-2018 CLM_0504 c84759649e61deb7931b71b173d57373 281 Gene3D G3DSA:3.30.1300.10 178 277 6.2E-32 T 13-10-2018 CLM_0504 c84759649e61deb7931b71b173d57373 281 Gene3D G3DSA:3.40.50.620 1 177 3.6E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0504 c84759649e61deb7931b71b173d57373 281 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 39.925 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CLM_2898 2ae1b4632438b2e203c49e4d64e2f10b 397 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 199 370 8.1E-8 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_2898 2ae1b4632438b2e203c49e4d64e2f10b 397 Gene3D G3DSA:3.30.930.10 91 396 2.5E-80 T 13-10-2018 CLM_2898 2ae1b4632438b2e203c49e4d64e2f10b 397 SUPERFAMILY SSF55681 93 373 8.92E-19 T 13-10-2018 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 SMART SM01134 73 232 5.9E-58 T 13-10-2018 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 Pfam PF00455 DeoR C terminal sensor domain 77 231 1.4E-45 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 SUPERFAMILY SSF100950 75 233 1.15E-25 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 Gene3D G3DSA:1.10.10.10 1 58 3.1E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 SMART SM00420 6 58 4.3E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.7E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1858 38d222168c07b2c1ca0d330c7debddc6 255 SUPERFAMILY SSF46785 4 78 1.66E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 SMART SM00478 38 185 1.5E-59 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 38.925 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 Gene3D G3DSA:1.10.340.30 21 132 6.6E-80 T 13-10-2018 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 TIGRFAM TIGR01083 nth: endonuclease III 5 194 1.4E-83 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 SUPERFAMILY SSF48150 4 209 1.08E-72 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 Gene3D G3DSA:1.10.1670.10 16 203 6.6E-80 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.7E-21 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 PIRSF PIRSF001435 2 212 1.2E-61 T 13-10-2018 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 SMART SM00525 186 206 0.0068 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 Pfam PF00633 Helix-hairpin-helix motif 100 127 7.8E-8 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CLM_0259 936c90bd07ba20cc12e0694249ff8bd3 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CLM_1580 ed57e289ea977488258a20ee9b7ac27c 72 Pfam PF12844 Helix-turn-helix domain 4 61 6.4E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1580 ed57e289ea977488258a20ee9b7ac27c 72 SUPERFAMILY SSF47413 3 70 4.15E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1580 ed57e289ea977488258a20ee9b7ac27c 72 Gene3D G3DSA:1.10.260.40 2 72 1.8E-11 T 13-10-2018 CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 SUPERFAMILY SSF53383 131 534 9.94E-42 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 325 338 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 Gene3D G3DSA:3.40.640.10 170 395 5.9E-224 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 Pfam PF00155 Aminotransferase class I and II 165 521 1.6E-21 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 Gene3D G3DSA:1.10.20.110 48 417 5.9E-224 T 13-10-2018 CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 Gene3D G3DSA:3.90.1150.10 41 537 5.9E-224 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1317 8577bfc17d4e786fd005f68d94ed05e7 547 TIGRFAM TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase 18 539 1.6E-269 T 13-10-2018 IPR022518 Aspartate 4-decarboxylase KEGG: 00220+2.6.1.1|KEGG: 00250+4.1.1.12+2.6.1.1|KEGG: 00270+4.1.1.12+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CLM_4141 331fd8cb8fc533d722eb53689153db6d 81 Pfam PF03698 Uncharacterised protein family (UPF0180) 2 73 3.6E-12 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 79 194 8.1E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 92 201 1.5E-12 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 Gene3D G3DSA:3.40.50.1000 5 223 2.2E-71 T 13-10-2018 IPR023214 HAD superfamily CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 158 1.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 189 202 1.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 111 124 1.4E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 227 1.0E-67 T 13-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 Gene3D G3DSA:1.10.150.240 16 100 2.2E-71 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 63 199 1.2E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 199 2.9E-28 T 13-10-2018 CLM_1179 afb3a0e877e9c43437ebd44c375f07c7 229 SUPERFAMILY SSF56784 2 228 4.73E-48 T 13-10-2018 IPR036412 HAD-like superfamily CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 SMART SM00448 1 113 1.2E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 SMART SM00850 133 224 9.0E-29 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 Gene3D G3DSA:3.40.50.2300 1 127 3.0E-17 T 13-10-2018 CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 SUPERFAMILY SSF52172 26 140 1.85E-15 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 Gene3D G3DSA:2.40.50.40 128 193 1.2E-18 T 13-10-2018 CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 Pfam PF04397 LytTr DNA-binding domain 134 223 7.6E-24 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0686 7d9fee4465b993a20bd23f5c561fd6bf 233 Pfam PF00072 Response regulator receiver domain 19 108 4.8E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0166 2e8801ccf0c90994811f655de9a21722 506 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 18 495 3.5E-191 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 CLM_0166 2e8801ccf0c90994811f655de9a21722 506 PIRSF PIRSF005690 5 506 1.2E-176 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 CLM_0467 2501aac5856b31066f6cb9f64280812f 358 TIGRFAM TIGR00277 HDIG: HDIG domain 160 226 2.2E-7 T 13-10-2018 IPR006675 HDIG domain CLM_0467 2501aac5856b31066f6cb9f64280812f 358 Pfam PF01966 HD domain 135 257 1.7E-17 T 13-10-2018 IPR006674 HD domain CLM_0467 2501aac5856b31066f6cb9f64280812f 358 SMART SM00471 131 267 2.4E-10 T 13-10-2018 IPR003607 HD/PDEase domain CLM_0467 2501aac5856b31066f6cb9f64280812f 358 SUPERFAMILY SSF109604 126 295 4.12E-34 T 13-10-2018 CLM_0467 2501aac5856b31066f6cb9f64280812f 358 Gene3D G3DSA:1.10.3210.10 13 299 6.3E-75 T 13-10-2018 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SMART SM00955 244 573 7.4E-183 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 TIGRFAM TIGR02063 RNase_R: ribonuclease R 1 702 1.2E-282 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SUPERFAMILY SSF50249 50 131 2.29E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SMART SM00316 620 702 1.7E-14 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SMART SM00316 131 195 6.7 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Gene3D G3DSA:2.40.50.140 132 199 3.6E-7 T 13-10-2018 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Gene3D G3DSA:2.40.50.140 56 131 4.2E-19 T 13-10-2018 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 54 702 1.4E-225 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SUPERFAMILY SSF50249 122 221 2.95E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Pfam PF00773 RNB domain 244 572 4.6E-118 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SUPERFAMILY SSF50249 620 706 3.43E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Pfam PF08206 Ribonuclease B OB domain 144 197 2.8E-7 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Pfam PF08206 Ribonuclease B OB domain 70 128 2.1E-23 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Pfam PF00575 S1 RNA binding domain 620 691 3.2E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SUPERFAMILY SSF50249 205 619 2.4E-148 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SMART SM00357 134 198 7.3E-8 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 SMART SM00357 69 129 2.4E-13 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Gene3D G3DSA:2.40.50.140 623 724 3.5E-23 T 13-10-2018 CLM_0282 e94d56c251541719b1e39d3bce8449af 725 Hamap MF_01895 Ribonuclease R [rnr]. 21 702 58.754 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CLM_2353 3e66070a3741c956d2314c6a112b0910 81 Gene3D G3DSA:1.10.260.40 4 81 1.1E-8 T 13-10-2018 CLM_2353 3e66070a3741c956d2314c6a112b0910 81 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 66 1.4E-21 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2353 3e66070a3741c956d2314c6a112b0910 81 SUPERFAMILY SSF47413 1 67 6.82E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2353 3e66070a3741c956d2314c6a112b0910 81 SMART SM00530 5 61 2.4E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0132 921c2bd09038c2a46e251d37b94ac00c 63 Gene3D G3DSA:3.30.70.20 1 61 3.2E-15 T 13-10-2018 CLM_0132 921c2bd09038c2a46e251d37b94ac00c 63 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 1.3E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CLM_0132 921c2bd09038c2a46e251d37b94ac00c 63 PRINTS PR00352 3Fe-4S ferredoxin signature 47 59 1.3E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CLM_0132 921c2bd09038c2a46e251d37b94ac00c 63 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 1.3E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CLM_0132 921c2bd09038c2a46e251d37b94ac00c 63 SUPERFAMILY SSF54862 1 60 1.92E-11 T 13-10-2018 CLM_0132 921c2bd09038c2a46e251d37b94ac00c 63 Pfam PF13459 4Fe-4S single cluster domain 3 60 7.4E-11 T 13-10-2018 CLM_4127 825063406fbfc258a40522a5dc98bd88 147 Gene3D G3DSA:3.10.430.100 60 147 2.0E-27 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CLM_4127 825063406fbfc258a40522a5dc98bd88 147 SUPERFAMILY SSF55653 57 146 3.66E-24 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CLM_4127 825063406fbfc258a40522a5dc98bd88 147 SUPERFAMILY SSF55658 1 56 1.5E-18 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CLM_4127 825063406fbfc258a40522a5dc98bd88 147 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 4.7E-24 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4127 825063406fbfc258a40522a5dc98bd88 147 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 26.293 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_4127 825063406fbfc258a40522a5dc98bd88 147 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4127 825063406fbfc258a40522a5dc98bd88 147 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 1.1E-42 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_4127 825063406fbfc258a40522a5dc98bd88 147 Gene3D G3DSA:3.40.5.10 1 59 2.2E-24 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4127 825063406fbfc258a40522a5dc98bd88 147 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 145 9.7E-27 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Pfam PF00679 Elongation factor G C-terminus 524 607 5.5E-17 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 144 3.6E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Pfam PF03764 Elongation factor G, domain IV 409 522 1.7E-19 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SUPERFAMILY SSF54980 524 607 9.59E-16 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Gene3D G3DSA:2.40.30.10 239 335 2.2E-16 T 13-10-2018 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 108 131 5.7E-15 T 13-10-2018 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 205 227 5.7E-15 T 13-10-2018 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 258 284 5.7E-15 T 13-10-2018 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SUPERFAMILY SSF54980 335 409 8.27E-11 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR00315 GTP-binding elongation factor signature 50 58 6.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR00315 GTP-binding elongation factor signature 122 131 6.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR00315 GTP-binding elongation factor signature 70 80 6.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR00315 GTP-binding elongation factor signature 86 97 6.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 PRINTS PR00315 GTP-binding elongation factor signature 4 17 6.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SUPERFAMILY SSF50447 216 333 6.31E-18 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Gene3D G3DSA:3.30.230.10 429 606 2.1E-37 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SUPERFAMILY SSF54211 408 522 1.63E-26 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Gene3D G3DSA:3.30.70.870 336 411 4.4E-6 T 13-10-2018 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Pfam PF00009 Elongation factor Tu GTP binding domain 2 227 2.1E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SMART SM00838 524 613 7.0E-5 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SMART SM00889 408 522 7.1E-21 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Gene3D G3DSA:3.30.70.240 528 598 2.1E-37 T 13-10-2018 CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 SUPERFAMILY SSF52540 2 226 2.97E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2310 9f64ea61cab133254eb071405e5ed0fc 651 Gene3D G3DSA:3.40.50.300 1 238 1.1E-67 T 13-10-2018 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Gene3D G3DSA:1.10.10.650 1 108 1.1E-37 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SUPERFAMILY SSF50249 632 718 1.72E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Pfam PF00575 S1 RNA binding domain 646 717 4.6E-20 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Gene3D G3DSA:1.10.3500.10 111 489 3.8E-152 T 13-10-2018 IPR023323 Tex-like domain superfamily CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SUPERFAMILY SSF158832 1 308 1.44E-112 T 13-10-2018 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SMART SM00316 646 717 1.4E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SUPERFAMILY SSF47781 551 629 4.45E-16 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Gene3D G3DSA:2.40.50.140 633 718 3.7E-28 T 13-10-2018 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SUPERFAMILY SSF53098 309 460 1.37E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Pfam PF16921 Tex protein YqgF-like domain 313 442 1.8E-52 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Gene3D G3DSA:1.10.150.310 490 627 4.4E-47 T 13-10-2018 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Pfam PF12836 Helix-hairpin-helix motif 482 546 4.5E-30 T 13-10-2018 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Pfam PF09371 Tex-like protein N-terminal domain 8 192 1.4E-69 T 13-10-2018 IPR018974 Tex-like protein, N-terminal CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SUPERFAMILY SSF47781 461 547 1.09E-27 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 Gene3D G3DSA:3.30.420.140 312 442 3.8E-152 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 CLM_0224 662fb9c91f929a503a347e9f1369eff8 718 SMART SM00732 313 415 1.6E-36 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 Pfam PF01842 ACT domain 151 211 9.3E-10 T 13-10-2018 IPR002912 ACT domain CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 TIGRFAM TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit 1 208 7.9E-72 T 13-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 PIRSF PIRSF036692 1 222 3.9E-93 T 13-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 Gene3D G3DSA:3.30.70.260 149 222 1.1E-16 T 13-10-2018 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 SUPERFAMILY SSF55021 140 220 1.53E-17 T 13-10-2018 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 SUPERFAMILY SSF143548 19 138 8.89E-32 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 Pfam PF03315 Serine dehydratase beta chain 5 75 6.8E-13 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CLM_1369 f6572b0372c1ce3f23988b9f49a9cdfc 224 Gene3D G3DSA:3.30.1330.90 13 91 1.2E-19 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 SMART SM00382 358 543 3.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 SUPERFAMILY SSF52540 323 568 1.77E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 Gene3D G3DSA:1.20.1560.10 1 314 6.3E-77 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 Pfam PF00005 ABC transporter 349 496 1.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 Pfam PF00664 ABC transporter transmembrane region 16 280 2.1E-38 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 Gene3D G3DSA:3.40.50.300 317 571 4.4E-77 T 13-10-2018 CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2171 0d76879e1fe3210496c75ab2a43c6a6f 576 SUPERFAMILY SSF90123 4 314 1.96E-66 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0973 faa5175c00b3dd7c68397349b6ba04ff 151 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 131 2.1E-45 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CLM_0973 faa5175c00b3dd7c68397349b6ba04ff 151 Gene3D G3DSA:3.30.70.560 1 151 2.0E-62 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CLM_0973 faa5175c00b3dd7c68397349b6ba04ff 151 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 87 98 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CLM_0973 faa5175c00b3dd7c68397349b6ba04ff 151 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 131 6.3E-40 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CLM_0973 faa5175c00b3dd7c68397349b6ba04ff 151 SUPERFAMILY SSF55083 1 150 3.4E-54 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 Gene3D G3DSA:3.30.230.10 1 158 4.3E-49 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 TIGRFAM TIGR00191 thrB: homoserine kinase 2 292 1.3E-83 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 81 92 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 SUPERFAMILY SSF55060 157 275 3.6E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 Pfam PF08544 GHMP kinases C terminal 196 261 9.0E-7 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 PIRSF PIRSF000676 1 295 8.3E-86 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 Gene3D G3DSA:3.30.70.890 159 281 2.9E-37 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 Pfam PF00288 GHMP kinases N terminal domain 74 135 9.9E-12 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 SUPERFAMILY SSF54211 1 146 6.6E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 PRINTS PR00958 Homoserine kinase signature 9 24 1.6E-38 T 13-10-2018 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 PRINTS PR00958 Homoserine kinase signature 122 135 1.6E-38 T 13-10-2018 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 PRINTS PR00958 Homoserine kinase signature 240 255 1.6E-38 T 13-10-2018 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 PRINTS PR00958 Homoserine kinase signature 88 103 1.6E-38 T 13-10-2018 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 PRINTS PR00958 Homoserine kinase signature 161 178 1.6E-38 T 13-10-2018 CLM_1880 e9fdebf1f9f327c23908706447b6b37d 297 Hamap MF_00384 Homoserine kinase [thrB]. 4 293 29.313 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Gene3D G3DSA:3.50.30.10 384 510 6.8E-80 T 13-10-2018 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 451 462 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Gene3D G3DSA:3.20.20.60 533 875 3.9E-155 T 13-10-2018 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 19 298 1.3E-50 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 304 357 4.0E-12 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Gene3D G3DSA:3.30.470.20 245 342 2.5E-44 T 13-10-2018 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 SUPERFAMILY SSF56059 3 380 7.65E-151 T 13-10-2018 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 SUPERFAMILY SSF52009 381 507 1.01E-37 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 762 780 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 4 872 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 519 871 1.6E-92 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Pfam PF00391 PEP-utilising enzyme, mobile domain 423 504 1.1E-28 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 SUPERFAMILY SSF51621 513 873 2.28E-132 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Gene3D G3DSA:3.30.1490.20 12 244 3.9E-109 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Gene3D G3DSA:1.10.189.10 346 530 6.8E-80 T 13-10-2018 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 PIRSF PIRSF000853 3 877 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CLM_3336 b740789cfa3306e42f505460603fc2cc 877 Gene3D G3DSA:1.20.80.30 112 199 3.9E-109 T 13-10-2018 CLM_1916 3e784d6a04e98d94e25f7dfcecc0993d 195 Pfam PF00929 Exonuclease 4 141 2.6E-10 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_1916 3e784d6a04e98d94e25f7dfcecc0993d 195 SMART SM00479 2 195 2.7E-4 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_1916 3e784d6a04e98d94e25f7dfcecc0993d 195 SUPERFAMILY SSF53098 2 190 2.78E-25 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_1916 3e784d6a04e98d94e25f7dfcecc0993d 195 Gene3D G3DSA:3.30.420.10 1 193 2.7E-28 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 SUPERFAMILY SSF50447 175 260 3.93E-25 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 SUPERFAMILY SSF50465 266 364 1.15E-29 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 SUPERFAMILY SSF52540 3 169 6.12E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 SUPERFAMILY SSF46785 584 634 1.5E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 PRINTS PR00315 GTP-binding elongation factor signature 110 119 5.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 PRINTS PR00315 GTP-binding elongation factor signature 73 84 5.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 PRINTS PR00315 GTP-binding elongation factor signature 5 18 5.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 PRINTS PR00315 GTP-binding elongation factor signature 57 67 5.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Pfam PF03144 Elongation factor Tu domain 2 194 260 1.7E-12 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Pfam PF09106 Elongation factor SelB, winged helix 451 505 1.7E-13 T 13-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Gene3D G3DSA:1.10.10.10 577 635 1.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 4 634 9.2E-118 T 13-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 29 44 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Pfam PF00009 Elongation factor Tu GTP binding domain 3 168 9.6E-35 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Gene3D G3DSA:1.10.10.2770 445 574 2.4E-29 T 13-10-2018 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 SUPERFAMILY SSF46785 515 573 6.26E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Gene3D G3DSA:2.40.30.10 176 264 7.8E-30 T 13-10-2018 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 164 4.1E-15 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Gene3D G3DSA:2.40.30.10 272 366 6.5E-6 T 13-10-2018 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 SUPERFAMILY SSF46785 440 512 2.99E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Gene3D G3DSA:3.40.50.300 2 170 1.7E-51 T 13-10-2018 CLM_3370 f3e557bc0a5bf46b5abe91c80c184663 635 Pfam PF09107 Elongation factor SelB, winged helix 589 634 1.9E-20 T 13-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 SUPERFAMILY SSF88659 201 275 4.58E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Gene3D G3DSA:1.10.220.120 10 73 1.3E-11 T 13-10-2018 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 SUPERFAMILY SSF88659 258 360 1.4E-30 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Pfam PF04542 Sigma-70 region 2 128 197 2.9E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Gene3D G3DSA:1.10.10.10 201 276 1.4E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Pfam PF04545 Sigma-70, region 4 296 349 4.2E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 321 347 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 SUPERFAMILY SSF88946 89 198 8.77E-54 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Gene3D G3DSA:1.10.10.10 278 361 3.3E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Gene3D G3DSA:1.10.601.10 88 121 1.3E-11 T 13-10-2018 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Gene3D G3DSA:1.10.601.10 122 200 5.2E-51 T 13-10-2018 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Pfam PF03979 Sigma-70 factor, region 1.1 15 77 3.0E-16 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 13 361 34.559 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 124 360 7.3E-124 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Pfam PF00140 Sigma-70 factor, region 1.2 90 121 7.6E-18 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 126 349 6.5E-40 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 PRINTS PR00046 Major sigma-70 factor signature 321 336 2.1E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 PRINTS PR00046 Major sigma-70 factor signature 300 312 2.1E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 PRINTS PR00046 Major sigma-70 factor signature 176 184 2.1E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 PRINTS PR00046 Major sigma-70 factor signature 152 165 2.1E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 PRINTS PR00046 Major sigma-70 factor signature 336 347 2.1E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 152 165 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3332 082456d000224d4d76d6e10bbcaacf80 361 Pfam PF04539 Sigma-70 region 3 207 283 2.6E-31 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CLM_1162 5eb8202c2b208d25365e24bd7d6257f4 262 Gene3D G3DSA:3.40.50.620 1 261 2.4E-86 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1162 5eb8202c2b208d25365e24bd7d6257f4 262 Pfam PF01012 Electron transfer flavoprotein domain 22 207 2.0E-46 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_1162 5eb8202c2b208d25365e24bd7d6257f4 262 SMART SM00893 22 213 1.9E-59 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_1162 5eb8202c2b208d25365e24bd7d6257f4 262 SUPERFAMILY SSF52402 1 258 9.77E-76 T 13-10-2018 CLM_1162 5eb8202c2b208d25365e24bd7d6257f4 262 PIRSF PIRSF000090 1 262 2.3E-85 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CLM_2835 3bd549cd78cb3d3fb9592206735d6e02 87 Pfam PF05239 PRC-barrel domain 7 80 3.3E-13 T 13-10-2018 IPR027275 PRC-barrel domain CLM_2835 3bd549cd78cb3d3fb9592206735d6e02 87 Gene3D G3DSA:2.30.30.240 7 81 5.6E-6 T 13-10-2018 CLM_2835 3bd549cd78cb3d3fb9592206735d6e02 87 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 9 78 1.1E-23 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH CLM_2835 3bd549cd78cb3d3fb9592206735d6e02 87 SUPERFAMILY SSF50346 6 78 1.6E-12 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CLM_2010 d814fe4d96880b9000b0f9138a6fc8d9 395 Pfam PF00999 Sodium/hydrogen exchanger family 7 378 2.5E-41 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CLM_2010 d814fe4d96880b9000b0f9138a6fc8d9 395 Gene3D G3DSA:1.20.1530.20 2 385 2.8E-31 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 Gene3D G3DSA:1.10.8.260 268 332 1.8E-130 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 2.2E-5 T 13-10-2018 CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 372 379 2.2E-5 T 13-10-2018 CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 Pfam PF03486 HI0933-like protein 3 402 2.5E-135 T 13-10-2018 CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 4 401 2.2E-140 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 SUPERFAMILY SSF160996 191 350 1.44E-47 T 13-10-2018 CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 Gene3D G3DSA:2.40.30.10 190 349 1.8E-130 T 13-10-2018 CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 Gene3D G3DSA:3.50.50.60 5 398 1.8E-130 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1967 0c05a649b276adf6156ae5d8e88f1b28 407 SUPERFAMILY SSF51905 3 404 7.14E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 SUPERFAMILY SSF52540 2 207 2.58E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 SMART SM00487 1 192 1.3E-13 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 Pfam PF00176 SNF2 family N-terminal domain 23 263 1.7E-22 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 Gene3D G3DSA:3.40.50.300 236 455 1.9E-24 T 13-10-2018 CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 Pfam PF00271 Helicase conserved C-terminal domain 304 408 6.8E-5 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 SUPERFAMILY SSF52540 118 451 5.6E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2667 8caf08b3ea5d0249e375f54bd130ec77 456 Gene3D G3DSA:3.40.50.10810 7 224 1.1E-27 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 SUPERFAMILY SSF53067 321 576 5.35E-50 T 13-10-2018 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 906 1224 1.6E-57 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 257 6.8E-21 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 322 576 4.4E-35 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Gene3D G3DSA:3.30.420.40 98 242 3.5E-68 T 13-10-2018 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Gene3D G3DSA:3.30.420.40 322 576 1.7E-82 T 13-10-2018 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Gene3D G3DSA:3.30.420.40 7 257 3.5E-68 T 13-10-2018 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 SUPERFAMILY SSF53067 6 257 8.52E-57 T 13-10-2018 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 672 891 9.8E-83 T 13-10-2018 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 CLM_3581 25d047ce062be326d07d5589eac02bb6 1430 Gene3D G3DSA:3.30.420.40 416 559 1.7E-82 T 13-10-2018 CLM_2211 9f9117956f5086465f7ebd148994c0c6 245 Gene3D G3DSA:3.40.50.10490 81 245 7.2E-26 T 13-10-2018 CLM_2211 9f9117956f5086465f7ebd148994c0c6 245 Gene3D G3DSA:1.10.10.10 2 74 9.0E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2211 9f9117956f5086465f7ebd148994c0c6 245 SUPERFAMILY SSF53697 82 243 2.67E-25 T 13-10-2018 CLM_2211 9f9117956f5086465f7ebd148994c0c6 245 SUPERFAMILY SSF46689 3 70 2.15E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2211 9f9117956f5086465f7ebd148994c0c6 245 Pfam PF01380 SIS domain 112 212 1.3E-16 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_2211 9f9117956f5086465f7ebd148994c0c6 245 Pfam PF01418 Helix-turn-helix domain, rpiR family 11 70 7.6E-12 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_0004 6fa388673b01b1674f2994eac5da059b 364 Gene3D G3DSA:1.20.1050.90 120 304 5.0E-105 T 13-10-2018 CLM_0004 6fa388673b01b1674f2994eac5da059b 364 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CLM_0004 6fa388673b01b1674f2994eac5da059b 364 ProSitePatterns PS00618 RecF protein signature 2. 305 323 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CLM_0004 6fa388673b01b1674f2994eac5da059b 364 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 364 91.017 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CLM_0004 6fa388673b01b1674f2994eac5da059b 364 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 337 1.9E-14 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CLM_0004 6fa388673b01b1674f2994eac5da059b 364 Gene3D G3DSA:3.40.50.300 7 337 5.0E-105 T 13-10-2018 CLM_0004 6fa388673b01b1674f2994eac5da059b 364 SUPERFAMILY SSF52540 1 363 8.24E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0004 6fa388673b01b1674f2994eac5da059b 364 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 360 1.2E-105 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Gene3D G3DSA:3.30.365.10 375 766 3.9E-105 T 13-10-2018 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 SUPERFAMILY SSF56003 115 770 4.19E-165 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 SMART SM01008 19 123 2.4E-45 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Gene3D G3DSA:3.30.365.10 193 288 1.8E-60 T 13-10-2018 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Gene3D G3DSA:3.30.365.10 455 627 3.9E-105 T 13-10-2018 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 712 1.7E-146 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Gene3D G3DSA:3.30.365.10 130 357 1.8E-60 T 13-10-2018 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Gene3D G3DSA:3.90.1170.50 1 123 8.0E-39 T 13-10-2018 CLM_3223 6962f93ba738678093ce0055e9a6a203 776 SUPERFAMILY SSF54665 4 144 1.83E-41 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLM_3223 6962f93ba738678093ce0055e9a6a203 776 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 19 123 2.9E-26 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 Gene3D G3DSA:3.90.550.10 1 239 3.1E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 SUPERFAMILY SSF48452 236 349 4.43E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 Pfam PF00515 Tetratricopeptide repeat 275 304 5.0E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 SUPERFAMILY SSF53448 2 218 1.84E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 Gene3D G3DSA:1.25.40.10 240 371 2.8E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 Pfam PF00535 Glycosyl transferase family 2 3 118 8.6E-35 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 SMART SM00028 307 339 300.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3067 ed6b556dfe63a2a6250fd22ed72b86e1 371 SMART SM00028 273 306 1.7E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1612 b885fc1dc4ecf752baf1db2855c17090 304 Pfam PF02445 Quinolinate synthetase A protein 8 298 1.2E-113 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CLM_1612 b885fc1dc4ecf752baf1db2855c17090 304 Gene3D G3DSA:3.40.50.10800 7 282 2.6E-110 T 13-10-2018 CLM_1612 b885fc1dc4ecf752baf1db2855c17090 304 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 4 299 1.0E-96 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CLM_1612 b885fc1dc4ecf752baf1db2855c17090 304 Gene3D G3DSA:3.40.50.10800 87 298 2.6E-110 T 13-10-2018 CLM_1612 b885fc1dc4ecf752baf1db2855c17090 304 Gene3D G3DSA:3.40.50.10800 171 257 2.6E-110 T 13-10-2018 CLM_1612 b885fc1dc4ecf752baf1db2855c17090 304 SUPERFAMILY SSF142754 4 300 4.18E-109 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 180 3.1E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 SUPERFAMILY SSF52540 6 225 4.08E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Gene3D G3DSA:3.30.70.2570 485 559 1.9E-35 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 SUPERFAMILY SSF54980 404 499 1.82E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Hamap MF_00071 Elongation factor 4 [lepA]. 1 602 304.961 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Gene3D G3DSA:3.30.70.870 291 372 4.6E-35 T 13-10-2018 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Pfam PF06421 GTP-binding protein LepA C-terminus 493 599 3.6E-51 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 TIGRFAM TIGR01393 lepA: elongation factor 4 8 601 0.0 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Gene3D G3DSA:2.40.30.10 191 290 5.6E-38 T 13-10-2018 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Pfam PF00679 Elongation factor G C-terminus 405 491 2.6E-24 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Gene3D G3DSA:3.40.50.300 5 190 1.0E-72 T 13-10-2018 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 SUPERFAMILY SSF54980 298 375 1.15E-19 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 SMART SM00838 402 491 2.3E-4 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Pfam PF03144 Elongation factor Tu domain 2 210 280 7.8E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Gene3D G3DSA:3.30.70.3380 373 484 1.4E-40 T 13-10-2018 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 PRINTS PR00315 GTP-binding elongation factor signature 54 62 1.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3358 633ce98478447d78cf3b8c0b75a45b05 602 Pfam PF00009 Elongation factor Tu GTP binding domain 8 186 3.4E-53 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_1708 dad697025e37959b2f771098d3617851 230 Pfam PF01048 Phosphorylase superfamily 2 227 4.1E-53 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CLM_1708 dad697025e37959b2f771098d3617851 230 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 3 227 5.9E-53 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_1708 dad697025e37959b2f771098d3617851 230 Gene3D G3DSA:3.40.50.1580 1 226 1.6E-66 T 13-10-2018 CLM_1708 dad697025e37959b2f771098d3617851 230 SUPERFAMILY SSF53167 1 227 4.58E-66 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 PIRSF PIRSF000102 4 316 2.6E-109 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 PRINTS PR00086 L-lactate dehydrogenase signature 174 187 2.5E-46 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 PRINTS PR00086 L-lactate dehydrogenase signature 120 140 2.5E-46 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 PRINTS PR00086 L-lactate dehydrogenase signature 144 162 2.5E-46 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 PRINTS PR00086 L-lactate dehydrogenase signature 34 58 2.5E-46 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 PRINTS PR00086 L-lactate dehydrogenase signature 9 33 2.5E-46 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 12 310 9.4E-124 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 Gene3D G3DSA:3.40.50.720 1 148 5.0E-61 T 13-10-2018 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 Gene3D G3DSA:3.90.110.10 149 316 1.5E-59 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 SUPERFAMILY SSF51735 4 146 9.04E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 176 182 - T 13-10-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 146 3.3E-46 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 7 316 42.031 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 149 314 1.0E-34 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 CLM_1754 036f1cda9c8a38e424e3cf2ae34f2efa 318 SUPERFAMILY SSF56327 147 313 3.63E-56 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 SMART SM00388 194 261 4.5E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 Gene3D G3DSA:3.30.565.10 263 416 8.9E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 SUPERFAMILY SSF47384 178 257 1.03E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 SUPERFAMILY SSF55874 250 415 3.27E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 SMART SM00304 122 193 0.0083 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 Pfam PF00512 His Kinase A (phospho-acceptor) domain 195 258 1.6E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 304 415 3.3E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 Gene3D G3DSA:1.10.287.130 126 261 3.3E-24 T 13-10-2018 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 414 3.2E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 395 3.2E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 3.2E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 3.2E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2622 9118793dce49b53eb4430185d02f6e3f 416 SMART SM00387 304 416 1.6E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_4060 01ffaedef3f34373988ec88f35aad044 189 SMART SM00909 81 168 1.2E-24 T 13-10-2018 IPR019606 GerMN domain CLM_4060 01ffaedef3f34373988ec88f35aad044 189 Pfam PF10646 Sporulation and spore germination 54 163 2.8E-19 T 13-10-2018 IPR019606 GerMN domain CLM_0805 8a1c7ae3e895d8080f4b63ba15c39a32 346 Pfam PF01032 FecCD transport family 29 341 1.7E-97 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_0805 8a1c7ae3e895d8080f4b63ba15c39a32 346 SUPERFAMILY SSF81345 11 341 9.15E-85 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_0805 8a1c7ae3e895d8080f4b63ba15c39a32 346 Gene3D G3DSA:1.10.3470.10 16 346 4.5E-99 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 Gene3D G3DSA:2.30.42.10 111 197 1.1E-90 T 13-10-2018 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 Gene3D G3DSA:3.30.750.44 63 346 1.1E-90 T 13-10-2018 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 SMART SM00245 183 371 8.9E-71 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 SUPERFAMILY SSF50156 102 182 4.3E-14 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 SMART SM00228 111 182 6.8E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 Gene3D G3DSA:3.90.226.10 198 368 1.1E-90 T 13-10-2018 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 Pfam PF13180 PDZ domain 113 183 2.3E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 SUPERFAMILY SSF52096 47 388 1.34E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 62 379 1.1E-108 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 CLM_3851 110082a66d764a9976490ec2c95d9a7b 401 Pfam PF03572 Peptidase family S41 208 370 2.0E-51 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CLM_0800 60e7d572f34854ba2593ab9ca1c0c6a2 593 Gene3D G3DSA:3.30.2010.10 146 228 6.5E-6 T 13-10-2018 CLM_0800 60e7d572f34854ba2593ab9ca1c0c6a2 593 Gene3D G3DSA:3.40.710.10 340 593 1.9E-85 T 13-10-2018 CLM_0800 60e7d572f34854ba2593ab9ca1c0c6a2 593 Pfam PF00905 Penicillin binding protein transpeptidase domain 385 587 2.6E-31 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CLM_0800 60e7d572f34854ba2593ab9ca1c0c6a2 593 SUPERFAMILY SSF56601 356 587 4.86E-33 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_0800 60e7d572f34854ba2593ab9ca1c0c6a2 593 Pfam PF05569 BlaR1 peptidase M56 13 308 1.3E-61 T 13-10-2018 IPR008756 Peptidase M56 CLM_3748 c6295f485128e1d35a9efc950e9604e1 209 Gene3D G3DSA:3.30.1330.70 15 128 2.0E-7 T 13-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 CLM_3748 c6295f485128e1d35a9efc950e9604e1 209 SUPERFAMILY SSF103084 12 126 3.14E-20 T 13-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 CLM_3748 c6295f485128e1d35a9efc950e9604e1 209 Pfam PF05866 Endodeoxyribonuclease RusA 11 124 3.6E-18 T 13-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 Gene3D G3DSA:2.40.50.140 1 64 3.9E-29 T 13-10-2018 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 PRINTS PR00050 Cold shock protein signature 3 18 9.9E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 PRINTS PR00050 Cold shock protein signature 23 32 9.9E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 PRINTS PR00050 Cold shock protein signature 38 56 9.9E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 SMART SM00357 2 65 4.9E-30 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 Pfam PF00313 'Cold-shock' DNA-binding domain 1 63 7.3E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 SUPERFAMILY SSF50249 2 64 1.91E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 PIRSF PIRSF002599 1 65 6.6E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CLM_0340 4db2e9e95d2c261a0d78972be34a53fd 65 ProSitePatterns PS00352 'Cold-shock' domain signature. 14 32 - T 13-10-2018 IPR019844 Cold-shock conserved site CLM_0709 95b903e32adc1cd22b56172734da52f2 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 8.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 8.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 Gene3D G3DSA:3.20.80.10 123 295 2.4E-39 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0709 95b903e32adc1cd22b56172734da52f2 295 SMART SM00871 123 293 2.3E-33 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_0709 95b903e32adc1cd22b56172734da52f2 295 Gene3D G3DSA:1.10.10.60 2 54 1.9E-15 T 13-10-2018 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 Gene3D G3DSA:1.10.10.60 55 108 7.0E-11 T 13-10-2018 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 SMART SM00342 21 103 7.9E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 SUPERFAMILY SSF55136 123 295 4.19E-20 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0709 95b903e32adc1cd22b56172734da52f2 295 SUPERFAMILY SSF46689 5 55 3.23E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 99 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 SUPERFAMILY SSF46689 57 105 3.45E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0709 95b903e32adc1cd22b56172734da52f2 295 Pfam PF14526 Integron-associated effector binding protein 127 292 2.1E-23 T 13-10-2018 IPR029441 Integron-associated effector binding protein CLM_0709 95b903e32adc1cd22b56172734da52f2 295 Pfam PF12833 Helix-turn-helix domain 27 103 2.9E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_3247 ea623d66b4a24bb1d2ace99edab23237 179 SUPERFAMILY SSF55729 2 170 1.8E-44 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3247 ea623d66b4a24bb1d2ace99edab23237 179 Gene3D G3DSA:3.40.630.30 1 177 1.2E-51 T 13-10-2018 CLM_3247 ea623d66b4a24bb1d2ace99edab23237 179 Pfam PF13302 Acetyltransferase (GNAT) domain 8 144 4.8E-25 T 13-10-2018 IPR000182 GNAT domain CLM_0156 2f33b6affe078e34d73fc411b63888ba 375 Pfam PF00534 Glycosyl transferases group 1 194 349 2.4E-37 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_0156 2f33b6affe078e34d73fc411b63888ba 375 SUPERFAMILY SSF53756 9 372 1.19E-78 T 13-10-2018 CLM_0156 2f33b6affe078e34d73fc411b63888ba 375 Gene3D G3DSA:3.40.50.2000 181 372 1.5E-47 T 13-10-2018 CLM_0156 2f33b6affe078e34d73fc411b63888ba 375 Gene3D G3DSA:3.40.50.2000 1 180 3.8E-12 T 13-10-2018 CLM_0156 2f33b6affe078e34d73fc411b63888ba 375 Pfam PF13439 Glycosyltransferase Family 4 17 168 9.2E-10 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 175 342 3.4E-29 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 134 2.0E-28 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Pfam PF01926 50S ribosome-binding GTPase 178 296 8.4E-27 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Pfam PF01926 50S ribosome-binding GTPase 6 121 4.0E-29 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 434 3.2E-181 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Gene3D G3DSA:3.40.50.300 1 164 1.6E-47 T 13-10-2018 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 354 434 2.2E-35 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 SUPERFAMILY SSF52540 6 166 2.66E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 SMART SM00382 175 320 2.9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 SMART SM00382 2 167 0.0032 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 2.2E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 74 92 2.2E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 PIRSF PIRSF006485 2 439 2.0E-182 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Gene3D G3DSA:3.30.300.20 354 437 1.4E-34 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Hamap MF_00195 GTPase Der [der]. 3 437 40.891 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 Gene3D G3DSA:3.40.50.300 171 352 5.8E-55 T 13-10-2018 CLM_2824 24103ccb2086bb1caa59b6bbcf4f2153 439 SUPERFAMILY SSF52540 140 438 2.26E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 Pfam PF00664 ABC transporter transmembrane region 49 331 1.1E-59 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 Gene3D G3DSA:1.20.1560.10 16 364 8.1E-106 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 SMART SM00382 403 589 4.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 Pfam PF00005 ABC transporter 395 543 8.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 Gene3D G3DSA:3.40.50.300 374 619 3.1E-89 T 13-10-2018 CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 ProSitePatterns PS00211 ABC transporters family signature. 515 529 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 SUPERFAMILY SSF52540 367 614 1.55E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2148 93a9c76b0617c1101e22b45028fb8d25 620 SUPERFAMILY SSF90123 32 360 4.05E-88 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1376 68792ac24904f64c2c2dc04e8b083807 322 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 3 320 1.1E-94 T 13-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 CLM_1376 68792ac24904f64c2c2dc04e8b083807 322 Gene3D G3DSA:3.20.20.140 1 322 2.5E-105 T 13-10-2018 CLM_1376 68792ac24904f64c2c2dc04e8b083807 322 SUPERFAMILY SSF51556 1 322 2.43E-80 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_0395 6ea9526b7425c1c0869fdc9f5f7a38f2 299 SUPERFAMILY SSF102114 25 212 1.16E-9 T 13-10-2018 CLM_0395 6ea9526b7425c1c0869fdc9f5f7a38f2 299 SMART SM00729 24 244 0.005 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_0395 6ea9526b7425c1c0869fdc9f5f7a38f2 299 Pfam PF04055 Radical SAM superfamily 28 192 4.0E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 182 419 2.2E-66 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 SUPERFAMILY SSF53223 5 184 9.6E-73 T 13-10-2018 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 SUPERFAMILY SSF51735 182 421 2.33E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 215 235 9.2E-34 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 347 358 9.2E-34 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 93 107 9.2E-34 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 173 195 9.2E-34 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 Gene3D G3DSA:3.40.50.10860 38 181 1.0E-64 T 13-10-2018 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 101 114 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 36 163 2.6E-56 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 Gene3D G3DSA:3.40.50.720 182 421 7.4E-83 T 13-10-2018 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 SMART SM00839 184 419 6.2E-90 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CLM_1968 a51546a4a65f8d75601e01bfa2bf8680 421 PIRSF PIRSF000185 3 421 2.3E-160 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CLM_1901 46d022a7560e0566ad46eb898c9676de 490 SUPERFAMILY SSF58104 91 347 1.13E-46 T 13-10-2018 CLM_1901 46d022a7560e0566ad46eb898c9676de 490 Gene3D G3DSA:1.10.287.950 55 355 7.7E-49 T 13-10-2018 CLM_1901 46d022a7560e0566ad46eb898c9676de 490 SMART SM00283 85 332 3.4E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1901 46d022a7560e0566ad46eb898c9676de 490 Gene3D G3DSA:1.20.120.30 362 481 7.3E-7 T 13-10-2018 CLM_1901 46d022a7560e0566ad46eb898c9676de 490 Pfam PF13682 Chemoreceptor zinc-binding domain 379 439 2.7E-7 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain CLM_1901 46d022a7560e0566ad46eb898c9676de 490 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 161 318 4.5E-28 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2872 e5c5ece2ce4afdaef4b0a1b338d5e940 342 Pfam PF01594 AI-2E family transporter 13 337 5.0E-63 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CLM_0981 9d327dbc9eabf74d67dfb79d248b264f 184 Pfam PF01613 Flavin reductase like domain 15 167 1.3E-17 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CLM_0981 9d327dbc9eabf74d67dfb79d248b264f 184 SUPERFAMILY SSF50475 9 171 5.4E-33 T 13-10-2018 CLM_0981 9d327dbc9eabf74d67dfb79d248b264f 184 SMART SM00903 11 145 1.0E-8 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CLM_0981 9d327dbc9eabf74d67dfb79d248b264f 184 Gene3D G3DSA:2.30.110.10 2 184 1.4E-56 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 SUPERFAMILY SSF53756 271 639 1.05E-47 T 13-10-2018 CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 SUPERFAMILY SSF53448 3 226 1.62E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 Gene3D G3DSA:3.40.50.2000 453 620 1.8E-14 T 13-10-2018 CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 Pfam PF00534 Glycosyl transferases group 1 442 614 3.8E-9 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 Pfam PF13439 Glycosyltransferase Family 4 277 431 8.1E-21 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 Gene3D G3DSA:3.90.550.10 1 259 2.7E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 Gene3D G3DSA:3.40.50.2000 264 452 2.0E-29 T 13-10-2018 CLM_2306 9083eeb0125b6bdc10a6383ef3060144 873 Pfam PF00535 Glycosyl transferase family 2 6 171 8.9E-27 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 Gene3D G3DSA:1.10.8.420 6 53 2.0E-19 T 13-10-2018 CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 ProSitePatterns PS01300 RecR protein signature. 58 79 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 105.596 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 Pfam PF13662 Toprim domain 81 171 5.1E-24 T 13-10-2018 IPR006171 TOPRIM domain CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 SUPERFAMILY SSF111304 4 198 1.83E-76 T 13-10-2018 IPR023627 Recombination protein RecR CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 Pfam PF02132 RecR protein 40 79 1.2E-17 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 SMART SM00493 81 165 7.2E-15 T 13-10-2018 IPR006171 TOPRIM domain CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 Gene3D G3DSA:3.40.1360.10 78 198 6.8E-47 T 13-10-2018 CLM_0039 36ccde2f0b9630cacceed3fa9363f75a 198 TIGRFAM TIGR00615 recR: recombination protein RecR 4 195 1.4E-80 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 Pfam PF02863 Arginine repressor, C-terminal domain 79 145 1.8E-21 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 SUPERFAMILY SSF55252 79 146 1.7E-15 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 TIGRFAM TIGR01529 argR_whole: arginine repressor 4 147 2.7E-40 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 Gene3D G3DSA:3.30.1360.40 68 148 2.3E-21 T 13-10-2018 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 91 140 7.0E-11 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 Gene3D G3DSA:1.10.10.10 3 65 6.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 SUPERFAMILY SSF46785 2 74 1.85E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 Hamap MF_00173 Arginine repressor [argR]. 1 150 56.564 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 Pfam PF01316 Arginine repressor, DNA binding domain 2 67 1.1E-23 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 PRINTS PR01467 Bacterial arginine repressor signature 117 132 7.7E-20 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 PRINTS PR01467 Bacterial arginine repressor signature 36 51 7.7E-20 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 PRINTS PR01467 Bacterial arginine repressor signature 20 33 7.7E-20 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CLM_2095 c3c9f806356cbeadd6ae07b295a8e5c8 150 PRINTS PR01467 Bacterial arginine repressor signature 87 100 7.7E-20 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 SUPERFAMILY SSF56042 818 956 1.94E-12 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 SUPERFAMILY SSF55326 636 816 3.14E-42 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 Pfam PF02769 AIR synthase related protein, C-terminal domain 442 591 1.1E-19 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 Gene3D G3DSA:3.90.650.10 429 608 5.2E-42 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 SUPERFAMILY SSF52317 986 1252 3.11E-73 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 SMART SM01211 989 1252 2.6E-122 T 13-10-2018 CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 TIGRFAM TIGR01857 FGAM-synthase: phosphoribosylformylglycinamidine synthase 7 1252 0.0 T 13-10-2018 IPR010141 Phosphoribosylformylglycinamidine synthase, FGAM CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 Gene3D G3DSA:3.40.50.880 988 1253 1.9E-70 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 SUPERFAMILY SSF56042 441 607 4.78E-34 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 Gene3D G3DSA:3.30.1330.10 650 813 2.2E-35 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 SUPERFAMILY SSF55326 206 429 3.03E-32 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 989 1252 1.1E-91 T 13-10-2018 CLM_2887 c3f56c6c56e9a90f56ad9b86e3eba353 1253 Gene3D G3DSA:3.90.650.10 815 959 2.0E-11 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_1721 14ab0b842e27968263b28be8ee279fc8 271 Gene3D G3DSA:3.40.190.10 45 266 3.7E-81 T 13-10-2018 CLM_1721 14ab0b842e27968263b28be8ee279fc8 271 SUPERFAMILY SSF53850 43 267 2.24E-69 T 13-10-2018 CLM_1721 14ab0b842e27968263b28be8ee279fc8 271 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 49 265 6.1E-70 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 CLM_1721 14ab0b842e27968263b28be8ee279fc8 271 Gene3D G3DSA:3.40.190.10 122 229 3.7E-81 T 13-10-2018 CLM_1721 14ab0b842e27968263b28be8ee279fc8 271 PIRSF PIRSF004846 1 270 4.5E-83 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 CLM_1721 14ab0b842e27968263b28be8ee279fc8 271 Pfam PF13531 Bacterial extracellular solute-binding protein 44 266 2.6E-50 T 13-10-2018 CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 SMART SM00729 299 550 1.5E-12 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 SUPERFAMILY SSF102114 297 548 1.06E-14 T 13-10-2018 CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 6 564 1.6E-273 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 6 565 53.941 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 Pfam PF04055 Radical SAM superfamily 304 502 5.1E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 Pfam PF08497 Radical SAM N-terminal 6 302 1.8E-136 T 13-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 Gene3D G3DSA:3.80.30.20 299 568 2.0E-13 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_0251 b31b05adb576c33cb641d5c5aced1d53 645 Pfam PF11842 Domain of unknown function (DUF3362) 518 641 2.5E-35 T 13-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal CLM_0105 8bf7dab4a2360975060c8479ac0a5d87 365 Pfam PF00877 NlpC/P60 family 268 356 6.4E-29 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CLM_0105 8bf7dab4a2360975060c8479ac0a5d87 365 SUPERFAMILY SSF54001 251 357 9.57E-44 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0105 8bf7dab4a2360975060c8479ac0a5d87 365 Gene3D G3DSA:3.90.1720.10 137 364 6.7E-55 T 13-10-2018 CLM_0105 8bf7dab4a2360975060c8479ac0a5d87 365 SUPERFAMILY SSF57997 30 92 7.63E-7 T 13-10-2018 CLM_1230 80635af0dc2577108cf3873823f45680 122 Gene3D G3DSA:3.10.530.10 48 116 1.5E-22 T 13-10-2018 IPR036593 CPE0013-like superfamily CLM_1230 80635af0dc2577108cf3873823f45680 122 Pfam PF07892 Protein of unknown function (DUF1667) 35 116 1.9E-33 T 13-10-2018 IPR012460 Protein of unknown function DUF1667 CLM_1230 80635af0dc2577108cf3873823f45680 122 SUPERFAMILY SSF160148 47 117 7.45E-25 T 13-10-2018 IPR036593 CPE0013-like superfamily CLM_1230 80635af0dc2577108cf3873823f45680 122 SUPERFAMILY SSF53706 6 54 4.24E-6 T 13-10-2018 CLM_3051 f850634709fcc6482bdb1a047a45a687 236 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 19 223 1.2E-71 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 CLM_3051 f850634709fcc6482bdb1a047a45a687 236 Gene3D G3DSA:3.40.50.300 2 229 4.5E-81 T 13-10-2018 CLM_3051 f850634709fcc6482bdb1a047a45a687 236 SUPERFAMILY SSF52540 39 221 1.5E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3051 f850634709fcc6482bdb1a047a45a687 236 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 39 230 1.2E-18 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 Gene3D G3DSA:3.40.50.360 249 389 4.2E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 Pfam PF00258 Flavodoxin 250 371 5.9E-8 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 SUPERFAMILY SSF56281 4 239 9.17E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 SUPERFAMILY SSF52218 247 389 1.62E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 Gene3D G3DSA:3.60.15.10 1 248 6.8E-90 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 PIRSF PIRSF005243 1 389 9.1E-131 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 SMART SM00849 34 220 2.5E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_2982 c0445a8e26601c6b646ee4a2a0cdf139 389 Pfam PF00753 Metallo-beta-lactamase superfamily 35 165 3.0E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 Gene3D G3DSA:1.10.3210.10 406 652 8.8E-21 T 13-10-2018 CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 SUPERFAMILY SSF109604 477 678 4.08E-15 T 13-10-2018 CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 Pfam PF07698 7TM receptor with intracellular HD hydrolase 268 453 5.7E-45 T 13-10-2018 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 Pfam PF01966 HD domain 478 622 1.0E-16 T 13-10-2018 IPR006674 HD domain CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 SMART SM00471 474 632 7.2E-10 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 TIGRFAM TIGR00277 HDIG: HDIG domain 475 573 6.3E-22 T 13-10-2018 IPR006675 HDIG domain CLM_3344 d55a3297554f9fd8b447675f9c1b3c2f 695 Pfam PF07697 7TM-HD extracellular 44 260 9.9E-40 T 13-10-2018 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain CLM_1053 fe3a28128c608648db1f440b991d8c83 215 Gene3D G3DSA:3.50.30.50 1 212 5.1E-61 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_1053 fe3a28128c608648db1f440b991d8c83 215 SUPERFAMILY SSF102198 1 213 5.36E-59 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_1053 fe3a28128c608648db1f440b991d8c83 215 Pfam PF04199 Putative cyclase 4 155 1.7E-28 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 422 2.5E-16 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 SUPERFAMILY SSF52413 313 434 9.02E-21 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 SUPERFAMILY SSF48179 210 300 1.87E-21 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 PIRSF PIRSF000124 6 436 1.5E-64 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 7 418 5.0E-98 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 Gene3D G3DSA:3.40.50.720 1 207 1.2E-55 T 13-10-2018 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 300 3.4E-21 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 SMART SM00984 327 423 1.4E-17 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 SUPERFAMILY SSF51735 7 203 2.57E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 Gene3D G3DSA:3.40.50.720 210 436 1.2E-52 T 13-10-2018 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 PIRSF PIRSF500136 1 436 5.2E-109 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 CLM_3079 2cd3a1e1d74c271f8c6fb1eab0142b32 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 7 191 2.1E-40 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Gene3D G3DSA:1.20.58.1950 230 279 1.5E-13 T 13-10-2018 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Gene3D G3DSA:2.30.24.10 2 74 2.0E-18 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Gene3D G3DSA:1.20.890.100 174 229 3.1E-18 T 13-10-2018 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Pfam PF03123 CAT RNA binding domain 9 63 7.2E-17 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 SUPERFAMILY SSF50151 9 62 7.19E-14 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 SUPERFAMILY SSF63520 179 278 5.23E-26 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 SMART SM01061 9 67 1.0E-21 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Gene3D G3DSA:1.10.1790.10 75 173 2.3E-29 T 13-10-2018 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Pfam PF00874 PRD domain 189 277 5.7E-23 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 Pfam PF00874 PRD domain 83 171 2.5E-23 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_3200 dfb63c306e68c46ac4311cfd8cb85fa9 285 SUPERFAMILY SSF63520 63 174 4.05E-30 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_3916 8cd91480e0b8e771608932cc20e4e079 288 Gene3D G3DSA:3.40.50.300 1 286 7.3E-84 T 13-10-2018 CLM_3916 8cd91480e0b8e771608932cc20e4e079 288 Pfam PF00005 ABC transporter 24 173 8.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3916 8cd91480e0b8e771608932cc20e4e079 288 SMART SM00382 32 222 3.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3916 8cd91480e0b8e771608932cc20e4e079 288 TIGRFAM TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase 3 278 2.1E-123 T 13-10-2018 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 CLM_3916 8cd91480e0b8e771608932cc20e4e079 288 SUPERFAMILY SSF52540 3 236 6.69E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3916 8cd91480e0b8e771608932cc20e4e079 288 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2645 5e9c5202680cec66b30d31a86fdd356b 226 Gene3D G3DSA:3.10.350.10 176 224 1.1E-15 T 13-10-2018 IPR036779 LysM domain superfamily CLM_2645 5e9c5202680cec66b30d31a86fdd356b 226 SMART SM00257 177 226 3.3E-7 T 13-10-2018 IPR018392 LysM domain CLM_2645 5e9c5202680cec66b30d31a86fdd356b 226 SUPERFAMILY SSF54106 175 226 1.1E-8 T 13-10-2018 CLM_2645 5e9c5202680cec66b30d31a86fdd356b 226 Pfam PF01476 LysM domain 178 226 1.0E-11 T 13-10-2018 IPR018392 LysM domain CLM_2400 e0701d3cdde58d50549a1ae39b133859 404 Gene3D G3DSA:3.40.50.10540 8 397 1.1E-101 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CLM_2400 e0701d3cdde58d50549a1ae39b133859 404 Pfam PF02515 CoA-transferase family III 8 380 4.4E-92 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 CLM_2400 e0701d3cdde58d50549a1ae39b133859 404 Gene3D G3DSA:3.30.1540.10 232 332 1.1E-101 T 13-10-2018 CLM_2400 e0701d3cdde58d50549a1ae39b133859 404 SUPERFAMILY SSF89796 6 403 1.57E-99 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 1 362 1.0E-131 T 13-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 Gene3D G3DSA:3.40.50.720 131 252 3.0E-25 T 13-10-2018 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 SUPERFAMILY SSF51971 1 357 2.0E-47 T 13-10-2018 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 Gene3D G3DSA:3.40.50.720 1 121 1.0E-32 T 13-10-2018 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 Gene3D G3DSA:3.40.50.720 253 366 2.1E-20 T 13-10-2018 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 71 2.4E-18 T 13-10-2018 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 SUPERFAMILY SSF54373 245 313 2.55E-26 T 13-10-2018 CLM_3049 97f6a41c7a800458f51f07ca5d32f7fc 366 Pfam PF03275 UDP-galactopyranose mutase 146 346 6.3E-84 T 13-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CLM_2141 43a425941d908f4dd8ce79744fea7178 157 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 157 37.307 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_2141 43a425941d908f4dd8ce79744fea7178 157 SUPERFAMILY SSF55068 1 155 3.53E-70 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_2141 43a425941d908f4dd8ce79744fea7178 157 Gene3D G3DSA:3.30.1060.10 1 157 4.6E-71 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_2141 43a425941d908f4dd8ce79744fea7178 157 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 2 152 7.8E-65 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_2141 43a425941d908f4dd8ce79744fea7178 157 Pfam PF01625 Peptide methionine sulfoxide reductase 3 153 2.8E-65 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 442 3.8E-161 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 Pfam PF01235 Sodium:alanine symporter family 60 454 1.0E-166 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PRINTS PR00175 Sodium/alanine symporter signature 187 205 2.7E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PRINTS PR00175 Sodium/alanine symporter signature 97 119 2.7E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PRINTS PR00175 Sodium/alanine symporter signature 306 324 2.7E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PRINTS PR00175 Sodium/alanine symporter signature 411 431 2.7E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PRINTS PR00175 Sodium/alanine symporter signature 215 234 2.7E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PRINTS PR00175 Sodium/alanine symporter signature 351 373 2.7E-61 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PIRSF PIRSF006060 289 457 5.0 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PIRSF PIRSF006060 52 269 3.5E-11 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 PIRSF PIRSF006060 1 49 38.0 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1404 96a892b7d8c8ab984d62f47e0f61aaa8 478 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 97 112 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3013 af34c9f699de4ca96af40576db6c3a83 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.1E-29 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CLM_3013 af34c9f699de4ca96af40576db6c3a83 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 1.2E-29 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 CLM_3013 af34c9f699de4ca96af40576db6c3a83 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 4.0E-23 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CLM_3013 af34c9f699de4ca96af40576db6c3a83 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 4.0E-23 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CLM_3013 af34c9f699de4ca96af40576db6c3a83 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 4.0E-23 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CLM_3013 af34c9f699de4ca96af40576db6c3a83 89 PIRSF PIRSF004669 1 89 4.6E-32 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 TIGRFAM TIGR03497 FliI_clade2: flagellar protein export ATPase FliI 25 436 2.8E-213 T 13-10-2018 IPR022425 Flagellar export ATPase FliI, clade 2 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 Gene3D G3DSA:3.40.50.12240 18 438 6.2E-153 T 13-10-2018 CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 SUPERFAMILY SSF52540 95 361 1.21E-93 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 90 8.6E-7 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 SMART SM00382 159 340 1.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 7 436 5.7E-192 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3025 728bff9ddbc766f4e6219b6e1e803804 438 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 356 8.1E-78 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_1505 6a7fdca2c71740d0497b62e04a01da71 137 Gene3D G3DSA:1.10.10.10 1 137 3.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1505 6a7fdca2c71740d0497b62e04a01da71 137 SUPERFAMILY SSF46785 2 134 8.16E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1505 6a7fdca2c71740d0497b62e04a01da71 137 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site CLM_1505 6a7fdca2c71740d0497b62e04a01da71 137 Pfam PF02082 Transcriptional regulator 1 83 4.5E-23 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_1505 6a7fdca2c71740d0497b62e04a01da71 137 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 2.7E-30 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_3007 694fa289164e08b275318ac2905f44ad 242 Pfam PF04542 Sigma-70 region 2 15 85 1.9E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 236 3.3E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 SUPERFAMILY SSF88659 150 238 7.48E-24 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3007 694fa289164e08b275318ac2905f44ad 242 PRINTS PR00046 Major sigma-70 factor signature 41 54 3.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 PRINTS PR00046 Major sigma-70 factor signature 206 221 3.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 PRINTS PR00046 Major sigma-70 factor signature 65 73 3.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 PRINTS PR00046 Major sigma-70 factor signature 189 201 3.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 PRINTS PR00046 Major sigma-70 factor signature 221 232 3.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 Pfam PF04545 Sigma-70, region 4 185 234 4.0E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 PIRSF PIRSF000770 5 241 8.3E-39 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 14 236 1.4E-80 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CLM_3007 694fa289164e08b275318ac2905f44ad 242 SUPERFAMILY SSF88659 88 163 7.85E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3007 694fa289164e08b275318ac2905f44ad 242 Gene3D G3DSA:1.20.140.160 87 239 1.8E-39 T 13-10-2018 CLM_3007 694fa289164e08b275318ac2905f44ad 242 SUPERFAMILY SSF88946 4 85 1.73E-25 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 Gene3D G3DSA:1.10.1740.10 3 83 2.6E-29 T 13-10-2018 CLM_3007 694fa289164e08b275318ac2905f44ad 242 Pfam PF04539 Sigma-70 region 3 94 172 9.1E-10 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CLM_3007 694fa289164e08b275318ac2905f44ad 242 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 41 54 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_0536 8b189610469642ba64d0f2b600a35256 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 59 75 9.0E-13 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CLM_0536 8b189610469642ba64d0f2b600a35256 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 265 283 9.0E-13 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CLM_0536 8b189610469642ba64d0f2b600a35256 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 37 53 9.0E-13 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CLM_0536 8b189610469642ba64d0f2b600a35256 380 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 78 96 9.0E-13 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CLM_0536 8b189610469642ba64d0f2b600a35256 380 Gene3D G3DSA:3.40.50.2300 38 356 1.3E-101 T 13-10-2018 CLM_0536 8b189610469642ba64d0f2b600a35256 380 Pfam PF13458 Periplasmic binding protein 36 357 1.0E-76 T 13-10-2018 IPR028081 Leucine-binding protein domain CLM_0536 8b189610469642ba64d0f2b600a35256 380 SUPERFAMILY SSF53822 35 377 2.66E-95 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CLM_0536 8b189610469642ba64d0f2b600a35256 380 Gene3D G3DSA:3.40.50.2300 155 283 1.3E-101 T 13-10-2018 CLM_2396 8022d83b0c7bcf93ac64ed4af764dc1b 261 SMART SM00893 22 213 2.1E-67 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_2396 8022d83b0c7bcf93ac64ed4af764dc1b 261 Gene3D G3DSA:3.40.50.620 1 261 6.4E-101 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2396 8022d83b0c7bcf93ac64ed4af764dc1b 261 PIRSF PIRSF000090 1 261 3.9E-98 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CLM_2396 8022d83b0c7bcf93ac64ed4af764dc1b 261 SUPERFAMILY SSF52402 1 256 1.53E-83 T 13-10-2018 CLM_2396 8022d83b0c7bcf93ac64ed4af764dc1b 261 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 157 177 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CLM_2396 8022d83b0c7bcf93ac64ed4af764dc1b 261 Pfam PF01012 Electron transfer flavoprotein domain 23 208 6.2E-54 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_0830 6b06ac3b25ce3debceb3703cca20dd5b 195 SUPERFAMILY SSF52218 1 185 5.54E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0830 6b06ac3b25ce3debceb3703cca20dd5b 195 Gene3D G3DSA:3.40.50.360 1 185 3.7E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0830 6b06ac3b25ce3debceb3703cca20dd5b 195 Pfam PF03358 NADPH-dependent FMN reductase 1 107 4.4E-23 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_0005 a349eaea7f1b5da1063596b251762734 87 Pfam PF04025 Domain of unknown function (DUF370) 2 79 1.7E-8 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A CLM_1577 69b48db64646e1eadaf4a97d3361b744 272 Gene3D G3DSA:3.40.190.10 126 227 3.1E-61 T 13-10-2018 CLM_1577 69b48db64646e1eadaf4a97d3361b744 272 SUPERFAMILY SSF53850 6 267 8.76E-59 T 13-10-2018 CLM_1577 69b48db64646e1eadaf4a97d3361b744 272 SMART SM00062 44 267 1.8E-52 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1577 69b48db64646e1eadaf4a97d3361b744 272 Gene3D G3DSA:3.40.190.10 48 264 3.1E-61 T 13-10-2018 CLM_1577 69b48db64646e1eadaf4a97d3361b744 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 265 2.7E-53 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 SUPERFAMILY SSF142019 146 386 2.75E-92 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 488 499 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 SUPERFAMILY SSF54862 579 629 3.01E-14 T 13-10-2018 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 SUPERFAMILY SSF52833 40 130 1.23E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 613 624 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 SUPERFAMILY SSF142984 387 470 4.05E-27 T 13-10-2018 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Gene3D G3DSA:3.40.30.10 39 135 5.7E-29 T 13-10-2018 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 194 365 1.9E-47 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Gene3D G3DSA:3.40.50.11540 199 377 5.5E-78 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 38 116 3.9E-9 T 13-10-2018 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Gene3D G3DSA:1.20.1440.230 473 573 3.0E-34 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 SMART SM00928 475 520 9.6E-23 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Gene3D G3DSA:3.30.70.20 576 631 3.4E-14 T 13-10-2018 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Pfam PF00037 4Fe-4S binding domain 607 628 5.0E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 476 560 4.6E-32 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Gene3D G3DSA:3.10.20.600 378 472 6.4E-36 T 13-10-2018 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 Pfam PF10531 SLBB domain 389 437 3.4E-8 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2008 4727c5ee1577ad6105e4da8c861685a5 631 SUPERFAMILY SSF140490 471 573 6.54E-38 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_1003 4c1698ab88b2cf81001932c86908b201 402 Gene3D G3DSA:2.60.120.10 20 383 8.3E-149 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_1003 4c1698ab88b2cf81001932c86908b201 402 TIGRFAM TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family 25 386 1.1E-156 T 13-10-2018 IPR017774 Bicupin, oxalate decarboxylase/oxidase GO:0033609 KEGG: 00630+4.1.1.2|MetaCyc: PWY-6698 CLM_1003 4c1698ab88b2cf81001932c86908b201 402 SMART SM00835 240 380 2.5E-20 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 CLM_1003 4c1698ab88b2cf81001932c86908b201 402 SMART SM00835 62 204 7.3E-18 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 CLM_1003 4c1698ab88b2cf81001932c86908b201 402 Gene3D G3DSA:2.60.120.10 68 241 8.3E-149 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_1003 4c1698ab88b2cf81001932c86908b201 402 Pfam PF00190 Cupin 241 358 3.9E-18 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 CLM_1003 4c1698ab88b2cf81001932c86908b201 402 Pfam PF00190 Cupin 72 201 1.7E-18 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 CLM_1003 4c1698ab88b2cf81001932c86908b201 402 SUPERFAMILY SSF51182 21 385 1.34E-94 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Pfam PF01926 50S ribosome-binding GTPase 160 283 7.9E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 SUPERFAMILY SSF102741 357 422 1.83E-18 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 SUPERFAMILY SSF52540 149 337 1.44E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 160 325 4.8E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 PIRSF PIRSF002401 1 372 1.4E-139 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Gene3D G3DSA:2.40.240.60 355 423 7.0E-15 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Hamap MF_01454 GTPase Obg [obg]. 1 331 47.478 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 3.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 3.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 3.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 3.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Pfam PF01018 GTP1/OBG 3 157 2.3E-61 T 13-10-2018 IPR006169 GTP1/OBG domain CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 357 422 1.3E-22 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 SUPERFAMILY SSF82051 2 157 4.58E-56 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Pfam PF09269 Domain of unknown function (DUF1967) 356 422 1.4E-21 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Gene3D G3DSA:2.70.210.12 1 157 3.5E-60 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 Gene3D G3DSA:3.40.50.300 158 338 1.8E-54 T 13-10-2018 CLM_3381 ef3dbd55594a5e92f0e73f928c5f9bbb 424 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 330 1.6E-142 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 SUPERFAMILY SSF52540 43 353 3.64E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Gene3D G3DSA:3.40.50.300 91 285 2.6E-130 T 13-10-2018 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 SMART SM00962 101 296 2.0E-118 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 6 448 34.859 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Pfam PF00448 SRP54-type protein, GTPase domain 102 296 2.0E-78 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 431 3.3E-189 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 SMART SM00963 2 87 1.8E-34 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 SUPERFAMILY SSF47446 327 430 1.41E-35 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Gene3D G3DSA:1.10.260.30 327 446 8.4E-41 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 PRINTS PR00364 Disease resistance protein signature 265 279 4.8E-5 T 13-10-2018 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 PRINTS PR00364 Disease resistance protein signature 356 372 4.8E-5 T 13-10-2018 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 PRINTS PR00364 Disease resistance protein signature 103 118 4.8E-5 T 13-10-2018 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Pfam PF02978 Signal peptide binding domain 327 429 6.3E-34 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Pfam PF02881 SRP54-type protein, helical bundle domain 6 83 7.6E-23 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 SMART SM00382 100 247 2.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 Gene3D G3DSA:1.20.120.140 6 306 2.6E-130 T 13-10-2018 CLM_2742 0f7b24ba25a8bcb2013631af27a6bbad 449 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 SUPERFAMILY SSF51306 31 201 1.71E-42 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 ProSitePatterns PS00761 Signal peptidases I signature 3. 160 173 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 ProSitePatterns PS00760 Signal peptidases I lysine active site. 111 123 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 Pfam PF10502 Signal peptidase, peptidase S26 96 188 1.9E-10 T 13-10-2018 IPR019533 Peptidase S26 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 Gene3D G3DSA:2.10.109.10 89 201 2.4E-30 T 13-10-2018 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 13 196 5.1E-44 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 Gene3D G3DSA:2.10.109.10 32 78 6.2E-6 T 13-10-2018 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 155 174 1.7E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 30 46 1.7E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_0685 0208306d6d8ebb42f3ea5cd5b5582654 202 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 109 121 1.7E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_1991 e197761d5929e4ab62f360b8f838ebe5 357 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 6 355 1.3E-122 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 CLM_1991 e197761d5929e4ab62f360b8f838ebe5 357 Gene3D G3DSA:3.40.50.11750 8 250 2.2E-104 T 13-10-2018 CLM_1991 e197761d5929e4ab62f360b8f838ebe5 357 Gene3D G3DSA:1.10.10.2140 304 355 1.6E-22 T 13-10-2018 CLM_1991 e197761d5929e4ab62f360b8f838ebe5 357 Gene3D G3DSA:3.40.50.11740 53 290 2.2E-104 T 13-10-2018 CLM_1991 e197761d5929e4ab62f360b8f838ebe5 357 PIRSF PIRSF005622 1 357 2.3E-130 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 CLM_1991 e197761d5929e4ab62f360b8f838ebe5 357 Pfam PF01924 Hydrogenase formation hypA family 7 353 3.6E-134 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 CLM_2885 7268c8ac8a008c48b4ff8d0dc06db99c 217 Pfam PF14344 Domain of unknown function (DUF4397) 21 135 7.0E-27 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 CLM_2885 7268c8ac8a008c48b4ff8d0dc06db99c 217 Pfam PF14344 Domain of unknown function (DUF4397) 120 207 4.4E-19 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 CLM_1521 86ada8f121ae9c9935c83e5d62b69098 451 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1521 86ada8f121ae9c9935c83e5d62b69098 451 Pfam PF02378 Phosphotransferase system, EIIC 121 392 6.3E-32 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_1521 86ada8f121ae9c9935c83e5d62b69098 451 SUPERFAMILY SSF55604 7 83 3.79E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1521 86ada8f121ae9c9935c83e5d62b69098 451 Pfam PF00367 phosphotransferase system, EIIB 9 39 1.7E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1521 86ada8f121ae9c9935c83e5d62b69098 451 Gene3D G3DSA:3.30.1360.60 1 79 1.7E-26 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 Pfam PF07729 FCD domain 98 222 3.7E-23 T 13-10-2018 IPR011711 GntR, C-terminal CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 Gene3D G3DSA:1.20.120.530 95 229 7.9E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 Gene3D G3DSA:1.10.10.10 3 80 1.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 SUPERFAMILY SSF46785 4 77 5.96E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 7.9E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 SMART SM00345 14 73 3.5E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 SMART SM00895 98 223 6.7E-17 T 13-10-2018 IPR011711 GntR, C-terminal CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 3.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 3.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1249 d3c2e4005aebe6e82cd39aac2c97b9b5 230 SUPERFAMILY SSF48008 96 227 2.04E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 SUPERFAMILY SSF55447 180 282 8.9E-20 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 7 171 4.0E-46 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 SMART SM01092 181 283 1.2E-20 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 Gene3D G3DSA:3.30.390.50 180 285 2.1E-23 T 13-10-2018 CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 Gene3D G3DSA:3.30.465.10 4 175 3.7E-53 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 183 282 2.8E-16 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal CLM_1445 52ef9f2391ac0276a0cabab49fb54c80 294 SUPERFAMILY SSF56176 7 171 4.53E-46 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 4 321 35.909 T 13-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Gene3D G3DSA:3.30.930.10 65 266 4.4E-60 T 13-10-2018 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 82 320 2.1E-56 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 SUPERFAMILY SSF55681 68 257 3.98E-54 T 13-10-2018 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Pfam PF03099 Biotin/lipoate A/B protein ligase family 87 208 7.8E-15 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Gene3D G3DSA:2.30.30.100 275 323 5.1E-13 T 13-10-2018 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 SUPERFAMILY SSF46785 4 57 3.26E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1275 809b72a89f0c3029a9413305c23c064a 327 SUPERFAMILY SSF50037 276 322 9.61E-8 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Gene3D G3DSA:1.10.10.10 1 61 6.7E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Pfam PF02237 Biotin protein ligase C terminal domain 275 321 5.4E-10 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_1275 809b72a89f0c3029a9413305c23c064a 327 Pfam PF08279 HTH domain 3 56 1.2E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 446 464 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 Gene3D G3DSA:3.50.30.10 5 232 2.5E-81 T 13-10-2018 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 4 538 4.1E-219 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 183 194 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 SUPERFAMILY SSF52009 124 245 2.35E-38 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 SUPERFAMILY SSF47831 23 142 1.1E-35 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 SUPERFAMILY SSF51621 248 538 6.28E-112 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 292 311 1.9E-32 T 13-10-2018 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 499 511 1.9E-32 T 13-10-2018 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 463 478 1.9E-32 T 13-10-2018 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 446 461 1.9E-32 T 13-10-2018 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 125 2.5E-34 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 537 4.5E-125 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 Pfam PF00391 PEP-utilising enzyme, mobile domain 151 224 5.9E-25 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 PIRSF PIRSF000732 1 539 6.1E-222 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 Gene3D G3DSA:3.20.20.60 233 539 3.4E-126 T 13-10-2018 CLM_3905 45ab98d662d1c7bd22469d922186a7d9 539 Gene3D G3DSA:1.10.274.10 22 145 2.5E-81 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 SMART SM00028 90 123 34.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 SMART SM00028 56 89 6.0E-8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 SMART SM00028 124 157 170.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 SMART SM00028 158 191 1.6E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 SMART SM00028 192 225 0.015 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 Gene3D G3DSA:1.25.40.10 9 82 8.7E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 Gene3D G3DSA:1.25.40.10 83 155 2.3E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 Pfam PF00515 Tetratricopeptide repeat 57 89 1.5E-9 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 SUPERFAMILY SSF48439 39 236 1.67E-33 T 13-10-2018 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 Gene3D G3DSA:1.25.40.10 156 248 4.0E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_2200 36e38801b0b7a775fbe00ab80337310e 251 Pfam PF13414 TPR repeat 168 204 2.1E-7 T 13-10-2018 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 Gene3D G3DSA:1.10.10.60 41 94 9.6E-14 T 13-10-2018 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 95 137 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 Gene3D G3DSA:1.10.10.60 95 147 4.7E-14 T 13-10-2018 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 SUPERFAMILY SSF46689 94 146 1.08E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 SMART SM00342 58 141 1.0E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 125 141 8.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 110 125 8.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 Pfam PF12833 Helix-turn-helix domain 64 142 1.6E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1017 dbb6b001a5d28c81bcbf301460acf030 412 SUPERFAMILY SSF46689 43 92 2.69E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2529 f2edc86f64ed3e9b3008a72c815e2a7a 451 Gene3D G3DSA:3.30.420.280 246 416 5.7E-35 T 13-10-2018 CLM_2529 f2edc86f64ed3e9b3008a72c815e2a7a 451 TIGRFAM TIGR01547 phage_term_2: phage terminase, large subunit, PBSX family 21 421 9.5E-93 T 13-10-2018 IPR006437 Bacteriophage terminase, large subunit GO:0006323 CLM_2529 f2edc86f64ed3e9b3008a72c815e2a7a 451 Pfam PF04466 Phage terminase large subunit 21 232 9.1E-75 T 13-10-2018 IPR035412 Phage terminase large subunit, N-terminal CLM_2529 f2edc86f64ed3e9b3008a72c815e2a7a 451 Gene3D G3DSA:3.40.50.300 6 233 2.0E-57 T 13-10-2018 CLM_2529 f2edc86f64ed3e9b3008a72c815e2a7a 451 Pfam PF17288 Terminase RNAseH like domain 269 410 1.7E-38 T 13-10-2018 IPR035413 Phage terminase large subunit, C-terminal CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 480 504 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Pfam PF08443 RimK-like ATP-grasp domain 212 315 9.4E-8 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Pfam PF08443 RimK-like ATP-grasp domain 384 466 6.2E-5 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Pfam PF02875 Mur ligase family, glutamate ligase domain 717 791 2.0E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Gene3D G3DSA:3.90.190.20 721 869 9.3E-24 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Gene3D G3DSA:3.30.470.20 206 362 5.5E-14 T 13-10-2018 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 SUPERFAMILY SSF56059 213 474 7.58E-32 T 13-10-2018 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Gene3D G3DSA:3.30.470.20 373 470 1.7E-13 T 13-10-2018 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 2 859 0.0 T 13-10-2018 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 SUPERFAMILY SSF53244 717 845 2.56E-25 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Gene3D G3DSA:3.40.1190.10 471 713 2.3E-42 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Gene3D G3DSA:3.30.1490.20 228 294 5.5E-14 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 Pfam PF08245 Mur ligase middle domain 482 692 9.0E-34 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_0163 16e3a8d89e09a53ba5a2c0d385cf155e 873 SUPERFAMILY SSF53623 441 728 9.03E-48 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 SUPERFAMILY SSF52402 11 207 3.14E-61 T 13-10-2018 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 Pfam PF01012 Electron transfer flavoprotein domain 13 192 2.8E-50 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 213 296 1.2E-35 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 Gene3D G3DSA:3.40.50.1220 210 342 5.6E-55 T 13-10-2018 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 SMART SM00893 13 202 2.4E-59 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 Gene3D G3DSA:3.40.50.620 8 209 3.8E-81 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 PIRSF PIRSF000089 9 337 1.9E-121 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CLM_2395 94d8a35e41288fe8f6755042bdd118ab 349 SUPERFAMILY SSF52467 211 333 2.18E-47 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_2208 793c8eda1786d04dde8eba81842f071e 465 Gene3D G3DSA:3.40.50.2300 1 105 3.0E-40 T 13-10-2018 CLM_2208 793c8eda1786d04dde8eba81842f071e 465 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 125 456 1.1E-113 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 CLM_2208 793c8eda1786d04dde8eba81842f071e 465 Pfam PF02378 Phosphotransferase system, EIIC 137 404 7.1E-16 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_2208 793c8eda1786d04dde8eba81842f071e 465 SUPERFAMILY SSF52794 3 103 1.43E-36 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CLM_2208 793c8eda1786d04dde8eba81842f071e 465 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 95 4.9E-16 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CLM_2208 793c8eda1786d04dde8eba81842f071e 465 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 87 7.0E-31 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 CLM_0329 b3bb6e428a562416b3089fc0001911e4 259 Gene3D G3DSA:1.10.10.10 4 74 8.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0329 b3bb6e428a562416b3089fc0001911e4 259 SUPERFAMILY SSF46689 7 73 5.2E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0329 b3bb6e428a562416b3089fc0001911e4 259 SUPERFAMILY SSF53697 87 252 2.67E-24 T 13-10-2018 CLM_0329 b3bb6e428a562416b3089fc0001911e4 259 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 74 1.3E-15 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_0329 b3bb6e428a562416b3089fc0001911e4 259 Pfam PF01380 SIS domain 117 223 1.4E-11 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_0329 b3bb6e428a562416b3089fc0001911e4 259 Gene3D G3DSA:3.40.50.10490 85 257 1.3E-29 T 13-10-2018 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 SMART SM00388 413 479 8.4E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 SMART SM00387 527 636 3.7E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 Gene3D G3DSA:3.30.565.10 479 636 1.0E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 SUPERFAMILY SSF47384 402 480 4.9E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 Pfam PF00512 His Kinase A (phospho-acceptor) domain 414 479 3.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 528 621 1.1E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 592 3.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 567 3.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 PRINTS PR00344 Bacterial sensor protein C-terminal signature 599 617 3.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 SUPERFAMILY SSF55874 468 620 7.07E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2140 2871b8bbc8c8aafef2c9d8c4c7f7dd01 637 Gene3D G3DSA:1.10.287.130 406 478 4.5E-20 T 13-10-2018 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 131 343 3.3E-68 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 334 343 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 SUPERFAMILY SSF52540 78 348 1.98E-95 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 Hamap MF_01347 ATP synthase subunit beta [atpB]. 2 461 58.202 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 7 74 1.9E-19 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 Gene3D G3DSA:2.40.10.170 3 76 7.3E-28 T 13-10-2018 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 SUPERFAMILY SSF47917 346 461 3.4E-52 T 13-10-2018 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 Gene3D G3DSA:3.40.50.300 77 345 7.4E-117 T 13-10-2018 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 SMART SM00382 143 328 2.6E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 4 461 1.4E-252 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 SUPERFAMILY SSF50615 3 75 1.57E-23 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0200 e81e8b68d348009588f136d10f3fd0e8 463 Gene3D G3DSA:1.10.1140.10 346 463 6.3E-56 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0991 921a90850af902a009c9c08749a537db 217 Pfam PF13599 Pentapeptide repeats (9 copies) 92 162 1.5E-10 T 13-10-2018 IPR001646 Pentapeptide repeat CLM_0991 921a90850af902a009c9c08749a537db 217 SUPERFAMILY SSF141571 38 215 9.81E-38 T 13-10-2018 CLM_0991 921a90850af902a009c9c08749a537db 217 Pfam PF00805 Pentapeptide repeats (8 copies) 57 89 1.5E-5 T 13-10-2018 IPR001646 Pentapeptide repeat CLM_0991 921a90850af902a009c9c08749a537db 217 Gene3D G3DSA:2.160.20.100 3 216 1.4E-40 T 13-10-2018 CLM_3362 b3375e1f7e466eb25b3a6313f46a4358 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 5.3E-25 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3362 b3375e1f7e466eb25b3a6313f46a4358 88 Gene3D G3DSA:1.20.58.110 1 87 2.2E-27 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3362 b3375e1f7e466eb25b3a6313f46a4358 88 SUPERFAMILY SSF46992 3 86 8.76E-28 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3362 b3375e1f7e466eb25b3a6313f46a4358 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.305 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3362 b3375e1f7e466eb25b3a6313f46a4358 88 Pfam PF01649 Ribosomal protein S20 2 84 1.2E-26 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3362 b3375e1f7e466eb25b3a6313f46a4358 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 19 88 8.0E-17 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 445 1.6E-170 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 SUPERFAMILY SSF54211 250 452 3.26E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 SUPERFAMILY SSF52540 62 286 5.73E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 SMART SM00382 85 239 6.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 Pfam PF13481 AAA domain 60 217 1.7E-14 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 Pfam PF13541 Subunit ChlI of Mg-chelatase 341 426 1.1E-9 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 Gene3D G3DSA:3.40.50.300 57 281 2.1E-44 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 Hamap MF_01498 DNA repair protein RadA [radA]. 21 452 41.418 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 Gene3D G3DSA:3.30.230.10 296 452 1.7E-15 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 169 193 1.3E-90 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 119 136 1.3E-90 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 10 34 1.3E-90 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 243 269 1.3E-90 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 317 340 1.3E-90 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 77 105 1.3E-90 T 13-10-2018 CLM_3979 451cb14d43471d4c9440299cab92d5ad 452 PRINTS PR01874 DNA repair protein radA signature 208 236 1.3E-90 T 13-10-2018 CLM_3614 8fc54d7d2e31fbaf070304fa245971db 260 Gene3D G3DSA:3.90.226.10 1 201 2.1E-74 T 13-10-2018 CLM_3614 8fc54d7d2e31fbaf070304fa245971db 260 Gene3D G3DSA:1.10.12.10 203 257 8.7E-24 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal CLM_3614 8fc54d7d2e31fbaf070304fa245971db 260 SUPERFAMILY SSF52096 3 256 6.42E-92 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_3614 8fc54d7d2e31fbaf070304fa245971db 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 CLM_3614 8fc54d7d2e31fbaf070304fa245971db 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 257 3.5E-76 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 SUPERFAMILY SSF63862 133 207 4.05E-6 T 13-10-2018 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 145 204 1.5E-12 T 13-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 18 127 1.0E-27 T 13-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 5 207 1.3E-55 T 13-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 SUPERFAMILY SSF63999 1 131 7.06E-36 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 SMART SM00983 138 205 5.3E-18 T 13-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2801 a03abbe2092f35b33d9f9fc5b6b19961 214 Gene3D G3DSA:3.40.50.10240 2 213 9.2E-66 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 Pfam PF00271 Helicase conserved C-terminal domain 396 500 3.8E-8 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 SUPERFAMILY SSF52540 143 511 1.96E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 SMART SM00490 408 500 5.6E-11 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 Pfam PF00270 DEAD/DEAH box helicase 133 265 6.2E-13 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 Gene3D G3DSA:3.40.50.300 325 526 6.1E-34 T 13-10-2018 CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 Gene3D G3DSA:3.40.50.300 110 307 3.4E-17 T 13-10-2018 CLM_2298 43575ad5452c9b22fa98f7fb0c5a2a5e 846 SMART SM00487 128 321 1.2E-13 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 Pfam PF00188 Cysteine-rich secretory protein family 93 208 3.7E-16 T 13-10-2018 IPR014044 CAP domain CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 Pfam PF01476 LysM domain 35 79 2.3E-12 T 13-10-2018 IPR018392 LysM domain CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 Gene3D G3DSA:3.40.33.10 80 211 2.7E-39 T 13-10-2018 IPR035940 CAP superfamily CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 SMART SM00257 34 79 7.4E-14 T 13-10-2018 IPR018392 LysM domain CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 Gene3D G3DSA:3.10.350.10 33 78 3.5E-13 T 13-10-2018 IPR036779 LysM domain superfamily CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 SUPERFAMILY SSF54106 33 79 3.79E-9 T 13-10-2018 CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 SUPERFAMILY SSF55797 85 209 2.09E-22 T 13-10-2018 IPR035940 CAP superfamily CLM_1930 ead7ef8b929944a601f83d7cc468d751 211 TIGRFAM TIGR02899 spore_safA: spore coat assembly protein SafA 37 79 2.6E-20 T 13-10-2018 IPR014248 Spore coat assembly protein SafA CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 6 245 1.4E-93 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 407 426 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 203 220 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 26 40 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 327 339 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 220 230 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 150 162 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 171 188 1.2E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 Gene3D G3DSA:3.40.50.800 368 462 2.5E-32 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 164 343 3.1E-10 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 SUPERFAMILY SSF55681 6 375 2.87E-128 T 13-10-2018 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 SUPERFAMILY SSF52954 359 461 6.34E-35 T 13-10-2018 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 4 462 52.375 T 13-10-2018 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 CLM_4003 1cd1fe2b5403d020963174beeffa553f 463 Pfam PF03129 Anticodon binding domain 372 459 7.0E-25 T 13-10-2018 IPR004154 Anticodon-binding CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 PIRSF PIRSF000106 20 390 3.5E-88 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 SUPERFAMILY SSF51735 160 389 2.88E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 Gene3D G3DSA:3.40.50.10380 1 157 1.2E-75 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 SMART SM00919 160 383 1.0E-131 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 Pfam PF03949 Malic enzyme, NAD binding domain 162 382 3.4E-29 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 SMART SM01274 15 148 7.3E-84 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 SUPERFAMILY SSF53223 6 158 2.16E-57 T 13-10-2018 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 Pfam PF00390 Malic enzyme, N-terminal domain 26 148 2.3E-29 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CLM_0260 ebf32ac09ed5a19163f4ae563c0cb04a 390 Gene3D G3DSA:3.40.50.720 158 389 4.9E-89 T 13-10-2018 CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 Gene3D G3DSA:1.10.10.10 5 139 1.4E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 3.1E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 3.1E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 3.1E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 3.1E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 SMART SM00347 25 125 6.0E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 SUPERFAMILY SSF46785 7 134 8.86E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 ProSitePatterns PS01117 MarR-type HTH domain signature. 65 98 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_1260 02e6cf153e0357b9e7162e6c804cb251 145 Pfam PF01047 MarR family 38 89 8.6E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2308 53e5fd7cf78f327a381bc9249a1c0805 198 Pfam PF11193 Protein of unknown function (DUF2812) 15 148 8.8E-31 T 13-10-2018 IPR021359 Protein of unknown function DUF2812 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 Pfam PF03466 LysR substrate binding domain 90 281 1.4E-13 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 Gene3D G3DSA:3.40.190.290 89 288 1.8E-11 T 13-10-2018 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 3.5E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 SUPERFAMILY SSF53850 90 281 4.21E-15 T 13-10-2018 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 Gene3D G3DSA:1.10.10.10 1 82 1.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1126 d45a751cac04c442f3c27fe47842fea2 292 SUPERFAMILY SSF46785 2 85 1.73E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2719 7c6be4a2064ead975be685991249dce7 385 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 229 2.8E-40 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_2719 7c6be4a2064ead975be685991249dce7 385 SUPERFAMILY SSF69055 291 381 3.4E-28 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_2719 7c6be4a2064ead975be685991249dce7 385 Gene3D G3DSA:1.10.1740.10 303 383 1.1E-23 T 13-10-2018 CLM_2719 7c6be4a2064ead975be685991249dce7 385 Pfam PF13288 DXP reductoisomerase C-terminal domain 261 377 4.2E-42 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_2719 7c6be4a2064ead975be685991249dce7 385 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 7.0E-42 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_2719 7c6be4a2064ead975be685991249dce7 385 SUPERFAMILY SSF55347 126 264 2.94E-61 T 13-10-2018 CLM_2719 7c6be4a2064ead975be685991249dce7 385 PIRSF PIRSF006205 1 384 8.6E-161 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_2719 7c6be4a2064ead975be685991249dce7 385 Gene3D G3DSA:3.40.50.720 1 150 9.7E-50 T 13-10-2018 CLM_2719 7c6be4a2064ead975be685991249dce7 385 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 379 6.7E-153 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_2719 7c6be4a2064ead975be685991249dce7 385 SUPERFAMILY SSF51735 2 150 3.64E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2719 7c6be4a2064ead975be685991249dce7 385 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 382 47.233 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 SUPERFAMILY SSF55781 49 187 3.92E-5 T 13-10-2018 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 SUPERFAMILY SSF55785 192 301 6.63E-13 T 13-10-2018 IPR035965 PAS domain superfamily CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 SUPERFAMILY SSF46689 540 636 3.88E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 617 636 2.9E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 600 617 2.9E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 350 363 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 540 549 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 SMART SM00091 200 268 2.4E-6 T 13-10-2018 IPR000014 PAS domain CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 413 428 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Pfam PF00158 Sigma-54 interaction domain 326 494 3.7E-70 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Gene3D G3DSA:1.10.10.60 592 636 8.8E-16 T 13-10-2018 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Gene3D G3DSA:1.10.8.60 499 582 5.3E-18 T 13-10-2018 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Gene3D G3DSA:3.30.450.20 188 304 9.3E-20 T 13-10-2018 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 SUPERFAMILY SSF52540 325 561 5.33E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 202 261 6.3E-7 T 13-10-2018 IPR000014 PAS domain CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Pfam PF02954 Bacterial regulatory protein, Fis family 593 634 6.8E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Pfam PF13188 PAS domain 202 257 4.8E-7 T 13-10-2018 IPR000014 PAS domain CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Gene3D G3DSA:3.30.450.40 3 187 3.7E-55 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 Gene3D G3DSA:3.40.50.300 312 498 1.7E-68 T 13-10-2018 CLM_1883 a8ae606c994cfc5b6f54abfa1de205c6 636 SMART SM00382 346 490 3.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1109 1c0b586a6671766f20a978d598d96781 265 PIRSF PIRSF006816 6 264 1.1E-72 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 CLM_1109 1c0b586a6671766f20a978d598d96781 265 Gene3D G3DSA:3.40.50.80 95 225 1.8E-21 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_1109 1c0b586a6671766f20a978d598d96781 265 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 228 257 1.2E-6 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_1109 1c0b586a6671766f20a978d598d96781 265 Gene3D G3DSA:2.40.30.10 8 94 2.8E-9 T 13-10-2018 CLM_1109 1c0b586a6671766f20a978d598d96781 265 Pfam PF00175 Oxidoreductase NAD-binding domain 109 209 3.7E-14 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CLM_1109 1c0b586a6671766f20a978d598d96781 265 SUPERFAMILY SSF52343 91 257 2.49E-29 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_1109 1c0b586a6671766f20a978d598d96781 265 SUPERFAMILY SSF63380 7 96 2.87E-17 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_1109 1c0b586a6671766f20a978d598d96781 265 PRINTS PR00406 Cytochrome B5 reductase signature 145 156 3.3E-6 T 13-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CLM_1109 1c0b586a6671766f20a978d598d96781 265 PRINTS PR00406 Cytochrome B5 reductase signature 196 204 3.3E-6 T 13-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CLM_1109 1c0b586a6671766f20a978d598d96781 265 PRINTS PR00406 Cytochrome B5 reductase signature 83 97 3.3E-6 T 13-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CLM_1109 1c0b586a6671766f20a978d598d96781 265 PRINTS PR00406 Cytochrome B5 reductase signature 107 126 3.3E-6 T 13-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CLM_1109 1c0b586a6671766f20a978d598d96781 265 TIGRFAM TIGR02911 sulfite_red_B: sulfite reductase, subunit B 5 265 3.6E-149 T 13-10-2018 IPR014260 Sulphite reductase, subunit B CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 437 4.6E-149 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 Pfam PF04055 Radical SAM superfamily 152 322 3.6E-27 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 Gene3D G3DSA:3.80.30.20 145 378 4.9E-86 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 Gene3D G3DSA:2.40.50.140 379 445 7.4E-19 T 13-10-2018 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 SUPERFAMILY SSF102114 142 369 2.62E-57 T 13-10-2018 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 150 170 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 Gene3D G3DSA:3.40.50.12160 4 138 9.5E-39 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 SMART SM00729 146 364 3.7E-53 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 Pfam PF00919 Uncharacterized protein family UPF0004 5 103 9.0E-26 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 437 1.2E-132 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CLM_2699 c93c9d809958fc45ceee78ec1216845a 445 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 439 66.144 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 CLM_1972 0b80af3b5a381276c2c16f06e6a06e68 426 PIRSF PIRSF006054 1 425 5.3E-122 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CLM_1972 0b80af3b5a381276c2c16f06e6a06e68 426 Pfam PF03313 Serine dehydratase alpha chain 171 419 2.4E-49 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CLM_1972 0b80af3b5a381276c2c16f06e6a06e68 426 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 2 423 33.484 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CLM_2304 b700d5fe1f8a09ad0ef98153218b1f6c 307 Gene3D G3DSA:3.90.25.10 172 299 3.5E-105 T 13-10-2018 CLM_2304 b700d5fe1f8a09ad0ef98153218b1f6c 307 SUPERFAMILY SSF51735 1 305 6.92E-95 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2304 b700d5fe1f8a09ad0ef98153218b1f6c 307 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 297 3.1E-56 T 13-10-2018 IPR016040 NAD(P)-binding domain CLM_2304 b700d5fe1f8a09ad0ef98153218b1f6c 307 Gene3D G3DSA:3.40.50.720 3 234 3.5E-105 T 13-10-2018 CLM_2245 6cae2a4c566cd31e38e44fe91d548f8c 362 Gene3D G3DSA:3.90.230.10 132 358 9.5E-73 T 13-10-2018 CLM_2245 6cae2a4c566cd31e38e44fe91d548f8c 362 Pfam PF01321 Creatinase/Prolidase N-terminal domain 6 131 2.8E-14 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 CLM_2245 6cae2a4c566cd31e38e44fe91d548f8c 362 SUPERFAMILY SSF55920 130 358 3.79E-70 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CLM_2245 6cae2a4c566cd31e38e44fe91d548f8c 362 Pfam PF00557 Metallopeptidase family M24 140 342 4.1E-57 T 13-10-2018 IPR000994 Peptidase M24 CLM_2245 6cae2a4c566cd31e38e44fe91d548f8c 362 SUPERFAMILY SSF53092 4 130 5.06E-15 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2245 6cae2a4c566cd31e38e44fe91d548f8c 362 Gene3D G3DSA:3.40.350.10 3 131 5.3E-21 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_3498 4da69b44919972b7e56de1498fb34f58 238 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 57 220 4.5E-58 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 CLM_3498 4da69b44919972b7e56de1498fb34f58 238 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 56 227 5.2E-54 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 CLM_3498 4da69b44919972b7e56de1498fb34f58 238 Hamap MF_02070 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase. 1 236 59.071 T 13-10-2018 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase GO:0047244 MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 Gene3D G3DSA:1.20.120.160 307 414 3.2E-10 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 Pfam PF08448 PAS fold 20 132 7.8E-8 T 13-10-2018 IPR013656 PAS fold-4 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 SMART SM00448 168 281 1.9E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 Pfam PF00072 Response regulator receiver domain 170 281 1.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 Gene3D G3DSA:3.40.50.2300 153 296 1.6E-38 T 13-10-2018 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 Gene3D G3DSA:3.30.450.20 8 144 5.6E-8 T 13-10-2018 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 Pfam PF01627 Hpt domain 334 380 4.0E-5 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 SUPERFAMILY SSF47226 264 399 7.33E-14 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CLM_0598 bf57f3d93f36dc27c05b41c2605c26f8 415 SUPERFAMILY SSF52172 169 300 4.7E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0404 d06d26cc519187aa1c06850825e1278f 615 SMART SM00388 361 429 1.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 SUPERFAMILY SSF55785 213 333 8.17E-8 T 13-10-2018 IPR035965 PAS domain superfamily CLM_0404 d06d26cc519187aa1c06850825e1278f 615 Gene3D G3DSA:3.30.565.10 436 591 2.8E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0404 d06d26cc519187aa1c06850825e1278f 615 Gene3D G3DSA:3.30.450.20 210 333 8.2E-10 T 13-10-2018 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 Gene3D G3DSA:1.10.287.130 352 434 7.3E-21 T 13-10-2018 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 SUPERFAMILY SSF47384 350 429 1.33E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 222 340 2.7E-9 T 13-10-2018 IPR000014 PAS domain CLM_0404 d06d26cc519187aa1c06850825e1278f 615 SMART SM00387 475 587 2.3E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0404 d06d26cc519187aa1c06850825e1278f 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 526 7.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 540 7.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 584 7.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 565 7.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 SUPERFAMILY SSF55874 418 587 8.25E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0404 d06d26cc519187aa1c06850825e1278f 615 Pfam PF13188 PAS domain 227 268 6.3E-4 T 13-10-2018 IPR000014 PAS domain CLM_0404 d06d26cc519187aa1c06850825e1278f 615 Pfam PF00512 His Kinase A (phospho-acceptor) domain 363 429 6.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0404 d06d26cc519187aa1c06850825e1278f 615 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 584 6.9E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Pfam PF13604 AAA domain 320 505 9.9E-48 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 SUPERFAMILY SSF52540 312 711 1.05E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 1 735 28.7 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 SMART SM00278 180 199 320.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 SMART SM00278 116 135 0.047 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 SMART SM00278 81 102 920.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 SUPERFAMILY SSF47781 80 156 4.45E-11 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Pfam PF14520 Helix-hairpin-helix domain 88 133 2.1E-8 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Pfam PF13538 UvrD-like helicase C-terminal domain 659 706 6.2E-18 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Pfam PF14490 Helix-hairpin-helix containing domain 138 228 9.6E-33 T 13-10-2018 IPR029493 RecD helicase-like helix-hairpin-helix domain CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 4 728 1.9E-211 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Gene3D G3DSA:3.40.50.300 306 727 2.7E-146 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Gene3D G3DSA:1.10.10.2220 179 274 2.5E-18 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Gene3D G3DSA:2.30.30.940 571 659 2.7E-146 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Gene3D G3DSA:3.40.50.300 481 722 2.7E-146 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 Gene3D G3DSA:1.10.150.20 75 136 5.5E-12 T 13-10-2018 CLM_0217 4e5d132fc6c9145f928309c985cb7546 744 SMART SM00382 332 451 4.7E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 Gene3D G3DSA:1.20.1560.10 3 319 1.6E-33 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 SUPERFAMILY SSF52540 326 563 4.31E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 Gene3D G3DSA:3.40.50.300 324 573 1.3E-86 T 13-10-2018 CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 ProSitePatterns PS00211 ABC transporters family signature. 468 482 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 SMART SM00382 356 548 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 Pfam PF00005 ABC transporter 348 496 4.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 SUPERFAMILY SSF90123 10 316 3.01E-41 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1843 53d75b0ee47f5138daf5d6feef0f9080 574 Pfam PF00664 ABC transporter transmembrane region 21 280 4.0E-21 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_1790 28b5db5054fafaa410a553966c4b6f35 240 SUPERFAMILY SSF55136 90 240 6.28E-22 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1790 28b5db5054fafaa410a553966c4b6f35 240 Gene3D G3DSA:3.20.80.10 86 240 2.8E-38 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1790 28b5db5054fafaa410a553966c4b6f35 240 Pfam PF14526 Integron-associated effector binding protein 91 239 1.0E-26 T 13-10-2018 IPR029441 Integron-associated effector binding protein CLM_1790 28b5db5054fafaa410a553966c4b6f35 240 SMART SM00871 87 240 5.3E-32 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_1790 28b5db5054fafaa410a553966c4b6f35 240 Pfam PF12674 Putative zinc ribbon domain 5 83 1.9E-27 T 13-10-2018 IPR025868 Putative zinc ribbon domain CLM_2054 568a54570a15c45235a15756bd8db01c 410 SUPERFAMILY SSF56563 115 397 1.12E-36 T 13-10-2018 CLM_2054 568a54570a15c45235a15756bd8db01c 410 Pfam PF05065 Phage capsid family 122 396 2.5E-29 T 13-10-2018 IPR024455 Phage capsid CLM_2054 568a54570a15c45235a15756bd8db01c 410 Gene3D G3DSA:3.30.2400.10 181 380 5.7E-9 T 13-10-2018 CLM_2054 568a54570a15c45235a15756bd8db01c 410 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 5 399 3.2E-65 T 13-10-2018 IPR024455 Phage capsid CLM_2054 568a54570a15c45235a15756bd8db01c 410 Gene3D G3DSA:3.30.2320.10 253 351 5.7E-9 T 13-10-2018 CLM_3194 dadccf05616efcd291ab54ea78adad6d 155 SUPERFAMILY SSF46785 10 147 5.14E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3194 dadccf05616efcd291ab54ea78adad6d 155 Gene3D G3DSA:3.30.1490.190 98 155 5.9E-14 T 13-10-2018 CLM_3194 dadccf05616efcd291ab54ea78adad6d 155 Gene3D G3DSA:1.10.10.10 4 87 7.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3194 dadccf05616efcd291ab54ea78adad6d 155 Pfam PF01475 Ferric uptake regulator family 15 143 3.5E-24 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CLM_1455 fcb2e5da48420e9fdf96e3b4cf3b1d4d 281 Gene3D G3DSA:3.30.70.270 117 279 1.6E-24 T 13-10-2018 CLM_1455 fcb2e5da48420e9fdf96e3b4cf3b1d4d 281 SMART SM00267 117 279 1.6E-7 T 13-10-2018 IPR000160 GGDEF domain CLM_1455 fcb2e5da48420e9fdf96e3b4cf3b1d4d 281 Pfam PF00990 Diguanylate cyclase, GGDEF domain 130 266 2.4E-22 T 13-10-2018 IPR000160 GGDEF domain CLM_1455 fcb2e5da48420e9fdf96e3b4cf3b1d4d 281 SUPERFAMILY SSF55073 134 275 6.43E-21 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_1455 fcb2e5da48420e9fdf96e3b4cf3b1d4d 281 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 129 277 7.5E-20 T 13-10-2018 IPR000160 GGDEF domain CLM_2778 8986656f1a9d23db3a5624e1910fbf97 372 TIGRFAM TIGR04481 PR_assoc_PrdC: proline reductase-associated electron transfer protein PrdC 5 371 3.0E-162 T 13-10-2018 IPR031001 Proline reductase-associated electron transfer protein PrdC CLM_2778 8986656f1a9d23db3a5624e1910fbf97 372 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 85 227 2.9E-43 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2778 8986656f1a9d23db3a5624e1910fbf97 372 Gene3D G3DSA:3.40.50.11540 89 237 3.7E-18 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2778 8986656f1a9d23db3a5624e1910fbf97 372 Pfam PF13375 RnfC Barrel sandwich hybrid domain 5 61 3.0E-12 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2778 8986656f1a9d23db3a5624e1910fbf97 372 SUPERFAMILY SSF142019 42 245 1.29E-50 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 178 193 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Gene3D G3DSA:1.10.1790.10 444 544 9.0E-23 T 13-10-2018 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Gene3D G3DSA:1.10.1790.10 808 907 3.3E-12 T 13-10-2018 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Pfam PF00158 Sigma-54 interaction domain 83 247 5.9E-45 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 SUPERFAMILY SSF63520 444 544 2.88E-22 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Pfam PF00874 PRD domain 454 540 1.3E-18 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Pfam PF00874 PRD domain 817 904 3.0E-16 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Gene3D G3DSA:3.40.50.300 69 258 2.4E-39 T 13-10-2018 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 SUPERFAMILY SSF52540 76 318 4.78E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 SUPERFAMILY SSF63520 806 904 3.4E-16 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Gene3D G3DSA:3.40.50.510 550 683 9.0E-43 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 SUPERFAMILY SSF53062 553 677 6.8E-21 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 SMART SM00382 105 259 6.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3806 fbe99c88689f61245a8bc965bfab4be5 909 Pfam PF03610 PTS system fructose IIA component 554 653 1.3E-13 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 SUPERFAMILY SSF56601 4 280 1.61E-69 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 137 150 3.2E-12 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 62 73 3.2E-12 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 110 127 3.2E-12 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 283 365 1.5E-5 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 SMART SM00936 280 367 2.4E-4 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 Gene3D G3DSA:3.40.710.10 19 301 7.0E-91 T 13-10-2018 CLM_3374 81af53d492d5674ccbdfc21d14f4293f 415 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 258 8.2E-56 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CLM_3904 cd527684cb94726ffd67a5477680c6b5 246 Gene3D G3DSA:2.40.128.660 71 239 8.9E-54 T 13-10-2018 CLM_3904 cd527684cb94726ffd67a5477680c6b5 246 Pfam PF15525 Domain of unknown function (DUF4652) 33 238 3.2E-83 T 13-10-2018 IPR028102 Protein of unknown function DUF4652 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 SUPERFAMILY SSF51338 33 395 1.44E-20 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 Pfam PF01979 Amidohydrolase family 98 386 4.9E-20 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 Pfam PF13382 Adenine deaminase C-terminal domain 444 609 5.0E-68 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 SUPERFAMILY SSF51556 102 352 1.86E-17 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 Hamap MF_01518 Adenine deaminase [ade]. 46 612 36.605 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 Gene3D G3DSA:2.30.40.10 38 387 5.8E-127 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 TIGRFAM TIGR01178 ade: adenine deaminase 46 613 1.6E-168 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CLM_0352 0cc7a2569c31429f6bf78222d731ae19 617 Gene3D G3DSA:3.20.20.140 102 349 5.8E-127 T 13-10-2018 CLM_0816 f82d08d00d0962f5baac3e9a46f89460 130 Pfam PF01597 Glycine cleavage H-protein 7 125 3.3E-42 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate CLM_0816 f82d08d00d0962f5baac3e9a46f89460 130 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 124 40.444 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CLM_0816 f82d08d00d0962f5baac3e9a46f89460 130 Gene3D G3DSA:2.40.50.100 1 130 1.2E-48 T 13-10-2018 CLM_0816 f82d08d00d0962f5baac3e9a46f89460 130 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 5 125 5.9E-44 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CLM_0816 f82d08d00d0962f5baac3e9a46f89460 130 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CLM_0816 f82d08d00d0962f5baac3e9a46f89460 130 SUPERFAMILY SSF51230 3 125 2.62E-40 T 13-10-2018 IPR011053 Single hybrid motif CLM_2069 248772e1b59ecedcb047d7b23f77fa50 173 Pfam PF01541 GIY-YIG catalytic domain 7 84 2.8E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease CLM_2069 248772e1b59ecedcb047d7b23f77fa50 173 SUPERFAMILY SSF82771 5 86 8.5E-13 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_2069 248772e1b59ecedcb047d7b23f77fa50 173 Gene3D G3DSA:3.40.1440.10 5 97 2.5E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3584 923bdedd657fc4391d8ee6378fd7ef7a 115 SUPERFAMILY SSF48452 3 108 2.55E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3584 923bdedd657fc4391d8ee6378fd7ef7a 115 SMART SM00028 68 100 15.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3584 923bdedd657fc4391d8ee6378fd7ef7a 115 SMART SM00028 34 67 0.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3584 923bdedd657fc4391d8ee6378fd7ef7a 115 SMART SM00028 1 33 0.078 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3584 923bdedd657fc4391d8ee6378fd7ef7a 115 Gene3D G3DSA:1.25.40.10 1 114 2.1E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3584 923bdedd657fc4391d8ee6378fd7ef7a 115 Pfam PF13424 Tetratricopeptide repeat 3 61 3.1E-9 T 13-10-2018 CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 Gene3D G3DSA:3.40.50.300 857 1053 1.2E-81 T 13-10-2018 CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 Pfam PF00176 SNF2 family N-terminal domain 665 916 4.3E-57 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 SUPERFAMILY SSF52540 633 850 4.11E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 Gene3D G3DSA:1.20.120.850 872 1091 1.2E-81 T 13-10-2018 CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 Pfam PF00271 Helicase conserved C-terminal domain 927 1039 1.5E-22 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 SMART SM00490 956 1039 9.4E-26 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 SUPERFAMILY SSF52540 852 1096 2.75E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 Gene3D G3DSA:3.40.50.10810 616 849 2.5E-66 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 SMART SM00487 643 826 1.1E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1838 0a79c0560ce619fdd01c215e053b45d8 1097 Pfam PF08455 Bacterial SNF2 helicase associated 245 640 2.7E-82 T 13-10-2018 IPR013663 Helicase, SWF/SNF/SWI type, bacterial CLM_0346 f2d1c5f27124cabff5bfe1de7eb713db 527 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 461 478 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_0346 f2d1c5f27124cabff5bfe1de7eb713db 527 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 411 508 1.1E-16 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_0346 f2d1c5f27124cabff5bfe1de7eb713db 527 SUPERFAMILY SSF55604 449 523 6.15E-20 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0346 f2d1c5f27124cabff5bfe1de7eb713db 527 Gene3D G3DSA:3.30.1360.60 444 524 2.9E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0346 f2d1c5f27124cabff5bfe1de7eb713db 527 Pfam PF00367 phosphotransferase system, EIIB 452 483 7.7E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_0346 f2d1c5f27124cabff5bfe1de7eb713db 527 Pfam PF02378 Phosphotransferase system, EIIC 14 351 1.5E-66 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 1.6E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 94 25.93 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 SUPERFAMILY SSF50129 1 94 8.67E-33 T 13-10-2018 IPR011032 GroES-like superfamily CLM_3733 4b36266e206ebecb4f641329fd86800e 95 SMART SM00883 2 93 6.1E-51 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 PRINTS PR00297 10kDa chaperonin signature 3 18 1.1E-31 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 PRINTS PR00297 10kDa chaperonin signature 80 93 1.1E-31 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 PRINTS PR00297 10kDa chaperonin signature 59 71 1.1E-31 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 PRINTS PR00297 10kDa chaperonin signature 25 46 1.1E-31 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CLM_3733 4b36266e206ebecb4f641329fd86800e 95 Gene3D G3DSA:2.30.33.40 1 95 5.2E-36 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 Gene3D G3DSA:3.40.190.10 93 289 7.9E-34 T 13-10-2018 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 SUPERFAMILY SSF53850 92 291 1.17E-31 T 13-10-2018 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 Pfam PF03466 LysR substrate binding domain 93 291 5.3E-28 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 Gene3D G3DSA:1.10.10.10 3 87 1.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 Gene3D G3DSA:3.40.190.10 166 267 7.9E-34 T 13-10-2018 CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 SUPERFAMILY SSF46785 4 112 2.57E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0754 99b374fd1de3b5b3a949c2d8c7956b2c 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.3E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1757 6b32332b457f4d7c029249295cf199c7 315 Pfam PF03595 Voltage-dependent anion channel 14 297 4.2E-30 T 13-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 CLM_1757 6b32332b457f4d7c029249295cf199c7 315 Gene3D G3DSA:1.50.10.150 5 302 6.1E-37 T 13-10-2018 IPR038665 Voltage-dependent anion channel superfamily CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 SUPERFAMILY SSF81296 644 735 8.54E-22 T 13-10-2018 IPR014756 Immunoglobulin E-set CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 SMART SM00636 43 424 2.5E-125 T 13-10-2018 IPR011583 Chitinase II GO:0008061 CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Gene3D G3DSA:2.60.40.10 538 633 2.5E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Gene3D G3DSA:2.60.40.10 453 537 9.0E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Gene3D G3DSA:3.10.50.10 315 395 3.5E-114 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Gene3D G3DSA:3.20.20.80 46 425 3.5E-114 T 13-10-2018 CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 SUPERFAMILY SSF81296 548 635 1.11E-13 T 13-10-2018 IPR014756 Immunoglobulin E-set CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Gene3D G3DSA:2.60.40.10 654 735 2.8E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 SUPERFAMILY SSF81296 454 542 2.38E-12 T 13-10-2018 IPR014756 Immunoglobulin E-set CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 SUPERFAMILY SSF51445 42 456 2.21E-93 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Pfam PF08329 Chitinase A, N-terminal domain 660 735 8.9E-6 T 13-10-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 SUPERFAMILY SSF54556 316 395 2.01E-8 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CLM_3196 51bbdf4a4910e2318c2e72be9d2b7f25 739 Pfam PF00704 Glycosyl hydrolases family 18 44 424 6.1E-89 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 Pfam PF01678 Diaminopimelate epimerase 3 126 2.3E-32 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 Pfam PF01678 Diaminopimelate epimerase 156 264 5.6E-17 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 Gene3D G3DSA:3.10.310.10 123 263 1.7E-92 T 13-10-2018 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 Gene3D G3DSA:3.10.310.10 3 269 1.7E-92 T 13-10-2018 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 SUPERFAMILY SSF54506 1 131 8.63E-39 T 13-10-2018 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 271 1.6E-81 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 SUPERFAMILY SSF54506 143 272 3.66E-38 T 13-10-2018 CLM_2129 d809c47ea504f764fc58a7eaf8599336 273 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 273 35.237 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 SUPERFAMILY SSF58104 340 669 4.62E-68 T 13-10-2018 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 SMART SM00283 394 669 1.9E-61 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 Gene3D G3DSA:3.30.450.20 140 273 1.7E-20 T 13-10-2018 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 SUPERFAMILY SSF103190 94 161 7.46E-6 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 SMART SM00304 307 365 0.0013 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 463 607 1.9E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 Pfam PF02743 Cache domain 35 268 1.0E-26 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 Gene3D G3DSA:1.20.1480.50 274 368 1.3E-13 T 13-10-2018 CLM_0810 47d0f8b5350ca810622f2eab29e4b22e 670 Gene3D G3DSA:1.10.287.950 369 669 3.9E-65 T 13-10-2018 CLM_3052 e2d5505d6cfaf56380bd72264a2bbc9e 257 Gene3D G3DSA:3.20.20.140 1 257 2.2E-84 T 13-10-2018 CLM_3052 e2d5505d6cfaf56380bd72264a2bbc9e 257 PIRSF PIRSF016557 1 253 2.5E-81 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 CLM_3052 e2d5505d6cfaf56380bd72264a2bbc9e 257 SUPERFAMILY SSF89550 1 199 4.51E-17 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_0453 62da18359d0c1d1e0e8d27218c6aed5c 503 SUPERFAMILY SSF54001 115 312 2.29E-15 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0453 62da18359d0c1d1e0e8d27218c6aed5c 503 SUPERFAMILY SSF63825 292 459 2.46E-5 T 13-10-2018 CLM_0453 62da18359d0c1d1e0e8d27218c6aed5c 503 Pfam PF16472 Domain of unknown function (DUF5050) 327 387 4.2E-9 T 13-10-2018 IPR032485 Domain of unknown function DUF5050 CLM_0453 62da18359d0c1d1e0e8d27218c6aed5c 503 Gene3D G3DSA:3.10.620.30 115 268 8.5E-10 T 13-10-2018 CLM_1167 7fa74e7440fc50618ad43a826f641dfc 156 SMART SM00347 29 132 2.3E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1167 7fa74e7440fc50618ad43a826f641dfc 156 Gene3D G3DSA:1.10.10.10 4 148 3.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1167 7fa74e7440fc50618ad43a826f641dfc 156 SUPERFAMILY SSF46785 37 151 2.27E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1167 7fa74e7440fc50618ad43a826f641dfc 156 Pfam PF01047 MarR family 39 93 5.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3207 ce001fea9046310312915d8060741549 160 SUPERFAMILY SSF46785 10 152 7.82E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3207 ce001fea9046310312915d8060741549 160 Pfam PF01475 Ferric uptake regulator family 15 148 1.1E-19 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CLM_3207 ce001fea9046310312915d8060741549 160 Gene3D G3DSA:1.10.10.10 3 87 5.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3207 ce001fea9046310312915d8060741549 160 Gene3D G3DSA:3.30.1490.190 98 160 5.0E-14 T 13-10-2018 CLM_1941 a88caee0005b4696a09bca5f83919bfa 309 Gene3D G3DSA:4.10.80.30 203 225 1.1E-38 T 13-10-2018 CLM_1941 a88caee0005b4696a09bca5f83919bfa 309 SMART SM00047 134 299 2.3E-22 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CLM_1941 a88caee0005b4696a09bca5f83919bfa 309 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 158 295 1.1E-19 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CLM_1941 a88caee0005b4696a09bca5f83919bfa 309 Gene3D G3DSA:1.10.530.10 150 296 1.1E-38 T 13-10-2018 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 SUPERFAMILY SSF63520 61 168 1.83E-28 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 Gene3D G3DSA:2.30.24.10 1 67 2.7E-19 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 Pfam PF00874 PRD domain 183 271 2.3E-22 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 Pfam PF00874 PRD domain 77 163 9.0E-25 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 Pfam PF03123 CAT RNA binding domain 4 58 1.8E-18 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 SUPERFAMILY SSF63520 175 271 7.32E-25 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 SMART SM01061 4 61 8.8E-23 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 Gene3D G3DSA:1.10.1790.10 173 274 1.3E-22 T 13-10-2018 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 Gene3D G3DSA:1.10.1790.10 68 167 5.0E-31 T 13-10-2018 CLM_3121 7d0368c183835b3ce5d8eab8cae8e3af 275 SUPERFAMILY SSF50151 4 54 1.83E-14 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 SUPERFAMILY SSF50104 2 113 7.22E-46 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CLM_2737 0f50bda131aaba280e9a68476aa23426 114 Gene3D G3DSA:2.30.30.790 5 114 1.3E-15 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.767 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 5.3E-48 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 PRINTS PR00061 Ribosomal protein L19 signature 4 33 2.1E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 PRINTS PR00061 Ribosomal protein L19 signature 88 113 2.1E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 PRINTS PR00061 Ribosomal protein L19 signature 34 63 2.1E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 Pfam PF01245 Ribosomal protein L19 4 113 1.3E-48 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2737 0f50bda131aaba280e9a68476aa23426 114 PIRSF PIRSF002191 1 114 1.3E-47 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Pfam PF07953 Clostridium neurotoxin, N-terminal receptor binding 814 988 1.6E-56 T 13-10-2018 IPR012928 Clostridium neurotoxin, receptor binding N-terminal GO:0005576|GO:0009405|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 SUPERFAMILY SSF55486 1 476 1.23E-158 T 13-10-2018 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Pfam PF01742 Clostridial neurotoxin zinc protease 1 364 4.7E-89 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Gene3D G3DSA:2.80.10.50 1005 1159 1.1E-81 T 13-10-2018 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 PRINTS PR00760 Bontoxilysin signature 228 244 5.1E-46 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 PRINTS PR00760 Bontoxilysin signature 30 46 5.1E-46 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 PRINTS PR00760 Bontoxilysin signature 63 79 5.1E-46 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 PRINTS PR00760 Bontoxilysin signature 88 110 5.1E-46 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 PRINTS PR00760 Bontoxilysin signature 181 193 5.1E-46 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 PRINTS PR00760 Bontoxilysin signature 6 22 5.1E-46 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 SUPERFAMILY SSF58091 465 796 4.71E-120 T 13-10-2018 IPR036248 Clostridium neurotoxin, translocation domain CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Pfam PF08470 Nontoxic nonhaemagglutinin C-terminal 998 1159 3.0E-88 T 13-10-2018 IPR013677 Nontoxic nonhaemagglutinin C-terminal CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 SUPERFAMILY SSF49899 806 988 1.22E-37 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Gene3D G3DSA:1.20.1120.10 469 799 9.6E-176 T 13-10-2018 IPR036248 Clostridium neurotoxin, translocation domain CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Gene3D G3DSA:3.90.1240.10 1 468 8.8E-199 T 13-10-2018 CLM_0896 d2a273215475cc7cbe52f0e0f83eb9ae 1159 Gene3D G3DSA:2.60.120.200 800 1004 2.2E-46 T 13-10-2018 CLM_0921 fa4a234f6fd463477b382bace4483911 275 Gene3D G3DSA:3.40.1190.20 1 269 6.6E-101 T 13-10-2018 IPR029056 Ribokinase-like CLM_0921 fa4a234f6fd463477b382bace4483911 275 Pfam PF08543 Phosphomethylpyrimidine kinase 11 254 2.6E-95 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CLM_0921 fa4a234f6fd463477b382bace4483911 275 SUPERFAMILY SSF53613 1 264 1.47E-82 T 13-10-2018 IPR029056 Ribokinase-like CLM_0921 fa4a234f6fd463477b382bace4483911 275 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 4 256 2.6E-105 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_1524 085ce85e7d1b2d4f8130d312e859b605 213 SUPERFAMILY SSF100950 11 154 8.16E-5 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_1524 085ce85e7d1b2d4f8130d312e859b605 213 Pfam PF02589 LUD domain 13 207 5.4E-58 T 13-10-2018 IPR003741 LUD domain CLM_1524 085ce85e7d1b2d4f8130d312e859b605 213 PIRSF PIRSF020269 1 213 1.7E-87 T 13-10-2018 IPR009501 Uncharacterised conserved protein UCP020269 CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 SUPERFAMILY SSF46785 5 82 5.73E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 SMART SM00345 12 71 2.3E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 SUPERFAMILY SSF116726 134 203 2.62E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 Gene3D G3DSA:1.10.10.10 4 126 5.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 Gene3D G3DSA:3.30.70.1450 131 206 6.4E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 2.7E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1288 8bccf940ea079dcb3163f8cffbb5a8b7 208 Pfam PF02080 TrkA-C domain 135 203 9.7E-15 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_3446 072d54bdb04b054c732a4599640345b7 70 SMART SM00530 5 61 6.3E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3446 072d54bdb04b054c732a4599640345b7 70 Gene3D G3DSA:1.10.260.40 4 67 5.5E-12 T 13-10-2018 CLM_3446 072d54bdb04b054c732a4599640345b7 70 SUPERFAMILY SSF47413 7 64 6.76E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_3446 072d54bdb04b054c732a4599640345b7 70 Pfam PF01381 Helix-turn-helix 7 61 9.0E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0482 ba5d725727e28e21b1518a8673800e56 453 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 55 79 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CLM_0482 ba5d725727e28e21b1518a8673800e56 453 SUPERFAMILY SSF53623 44 303 3.21E-35 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_0482 ba5d725727e28e21b1518a8673800e56 453 Pfam PF08353 Domain of unknown function (DUF1727) 326 436 1.6E-38 T 13-10-2018 IPR013564 Domain of unknown function DUF1727 CLM_0482 ba5d725727e28e21b1518a8673800e56 453 Pfam PF08245 Mur ligase middle domain 57 286 1.6E-16 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 Pfam PF00455 DeoR C terminal sensor domain 81 237 6.9E-44 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 SMART SM00420 8 60 1.5E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 SMART SM01134 79 239 5.1E-59 T 13-10-2018 CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 SUPERFAMILY SSF46785 8 62 1.53E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 Pfam PF08220 DeoR-like helix-turn-helix domain 8 62 1.7E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 Gene3D G3DSA:1.10.10.10 1 57 4.4E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 SUPERFAMILY SSF100950 80 237 2.2E-28 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 3.7E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1430 a34c4f43f4adf67eb10f6f778c22cb90 264 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 3.7E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 SUPERFAMILY SSF88659 115 172 1.16E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2680 ec70dde2ed554413adcbd00242f23500 183 SUPERFAMILY SSF88946 5 75 3.92E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 Pfam PF04545 Sigma-70, region 4 126 172 8.6E-9 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 PRINTS PR00046 Major sigma-70 factor signature 145 160 4.2E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 PRINTS PR00046 Major sigma-70 factor signature 30 43 4.2E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 PRINTS PR00046 Major sigma-70 factor signature 54 62 4.2E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 PRINTS PR00046 Major sigma-70 factor signature 160 171 4.2E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 Pfam PF04542 Sigma-70 region 2 5 75 1.6E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 Gene3D G3DSA:1.20.140.160 78 177 6.4E-10 T 13-10-2018 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 172 6.8E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 30 43 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2680 ec70dde2ed554413adcbd00242f23500 183 Gene3D G3DSA:1.20.120.1810 2 74 9.8E-20 T 13-10-2018 CLM_0147 241e678f7229e99cff894895c3ad16b7 268 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 6 259 1.8E-83 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 CLM_0147 241e678f7229e99cff894895c3ad16b7 268 SUPERFAMILY SSF52402 18 219 8.6E-34 T 13-10-2018 CLM_0147 241e678f7229e99cff894895c3ad16b7 268 Gene3D G3DSA:3.40.50.620 2 166 9.7E-27 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0147 241e678f7229e99cff894895c3ad16b7 268 PIRSF PIRSF006661 1 268 1.2E-103 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 CLM_0147 241e678f7229e99cff894895c3ad16b7 268 Pfam PF02540 NAD synthase 16 83 2.0E-6 T 13-10-2018 IPR022310 NAD/GMP synthase CLM_2714 4153c8a76374883a934305a48c011b20 457 Pfam PF08529 NusA N-terminal domain 4 127 2.1E-41 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CLM_2714 4153c8a76374883a934305a48c011b20 457 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 397 30.551 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 CLM_2714 4153c8a76374883a934305a48c011b20 457 SUPERFAMILY SSF54814 203 280 2.16E-32 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CLM_2714 4153c8a76374883a934305a48c011b20 457 Gene3D G3DSA:2.40.50.140 140 201 1.5E-21 T 13-10-2018 CLM_2714 4153c8a76374883a934305a48c011b20 457 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 347 3.8E-134 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 CLM_2714 4153c8a76374883a934305a48c011b20 457 Gene3D G3DSA:3.30.300.20 202 280 2.9E-36 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_2714 4153c8a76374883a934305a48c011b20 457 SUPERFAMILY SSF54814 285 346 3.34E-17 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CLM_2714 4153c8a76374883a934305a48c011b20 457 SUPERFAMILY SSF69705 1 129 6.28E-38 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 CLM_2714 4153c8a76374883a934305a48c011b20 457 Gene3D G3DSA:3.30.300.20 283 444 4.5E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_2714 4153c8a76374883a934305a48c011b20 457 SUPERFAMILY SSF50249 136 202 7.61E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2714 4153c8a76374883a934305a48c011b20 457 SMART SM00322 307 398 1.6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CLM_2714 4153c8a76374883a934305a48c011b20 457 SMART SM00322 233 306 1.4 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CLM_2714 4153c8a76374883a934305a48c011b20 457 Gene3D G3DSA:3.30.1480.10 1 132 1.6E-44 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 CLM_2714 4153c8a76374883a934305a48c011b20 457 SMART SM00316 137 203 0.0014 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_2714 4153c8a76374883a934305a48c011b20 457 Pfam PF13184 NusA-like KH domain 233 301 1.7E-27 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 CLM_2386 bea0d6e4a66b67e0ff79a32311efd484 343 SUPERFAMILY SSF53474 70 339 2.36E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2386 bea0d6e4a66b67e0ff79a32311efd484 343 Pfam PF07859 alpha/beta hydrolase fold 110 317 2.4E-69 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 CLM_2386 bea0d6e4a66b67e0ff79a32311efd484 343 Gene3D G3DSA:3.40.50.1820 32 340 1.8E-86 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 20 51 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 Pfam PF03449 Transcription elongation factor, N-terminal 8 77 2.1E-30 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 SUPERFAMILY SSF46557 5 80 3.4E-27 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 158 1.2E-25 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 8 158 2.2E-57 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 PIRSF PIRSF006092 1 160 1.9E-51 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 158 32.288 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 Gene3D G3DSA:1.10.287.180 4 78 5.0E-30 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 SUPERFAMILY SSF54534 84 157 5.23E-22 T 13-10-2018 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 123 139 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CLM_4005 45d1c5b2646b99e9a877e880df6097e9 160 Gene3D G3DSA:3.10.50.30 80 160 5.5E-26 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 Gene3D G3DSA:3.40.50.300 33 274 1.6E-82 T 13-10-2018 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 SUPERFAMILY SSF52540 10 274 9.43E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 Gene3D G3DSA:3.30.250.10 275 349 1.7E-25 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 SMART SM00382 64 235 2.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 11 330 5.3E-173 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 PRINTS PR00142 RecA protein signature 134 163 2.2E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 PRINTS PR00142 RecA protein signature 100 129 2.2E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 PRINTS PR00142 RecA protein signature 217 245 2.2E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 PRINTS PR00142 RecA protein signature 304 321 2.2E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 PRINTS PR00142 RecA protein signature 172 201 2.2E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 PRINTS PR00142 RecA protein signature 250 279 2.2E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 Hamap MF_00268 Protein RecA [recA]. 12 336 51.92 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 ProSitePatterns PS00321 recA signature. 220 228 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 Pfam PF00154 recA bacterial DNA recombination protein 14 275 2.5E-144 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CLM_2697 f661560c65dec9adad42db0d1fad9a51 355 SUPERFAMILY SSF54752 275 332 6.67E-20 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 SMART SM00448 6 121 2.5E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 Gene3D G3DSA:1.10.10.10 154 273 4.2E-54 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 TIGRFAM TIGR02875 spore_0_A: sporulation transcription factor Spo0A 5 272 4.3E-132 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 SUPERFAMILY SSF46894 157 271 5.02E-50 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 Pfam PF00072 Response regulator receiver domain 8 121 5.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 ProDom PD010908 TRANSCRIPTION SPORULATION TWO-COMPONENT DNA-BINDING PHOSPHORYLATION SENSORY REGULATION TRANSDUCTION METAL-BINDING CALCIUM 163 271 4.0E-56 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 SUPERFAMILY SSF52172 5 138 1.57E-33 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 PIRSF PIRSF002937 1 273 1.2E-138 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 Gene3D G3DSA:3.40.50.2300 1 136 1.6E-32 T 13-10-2018 CLM_2088 9a644c32e885ca77e60c923f9cb44c07 273 Pfam PF08769 Sporulation initiation factor Spo0A C terminal 163 266 2.2E-47 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 2.3E-53 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 SUPERFAMILY SSF52283 2 133 1.53E-35 T 13-10-2018 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 SUPERFAMILY SSF51735 102 299 8.35E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 Gene3D G3DSA:3.40.50.720 102 297 1.1E-124 T 13-10-2018 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 175 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 326 2.3E-28 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 Gene3D G3DSA:3.40.50.720 2 318 1.1E-124 T 13-10-2018 CLM_3717 c5aa03bf050f3f5a57896b81461ccdae 331 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 Pfam PF16916 Dimerisation domain of Zinc Transporter 212 289 2.9E-21 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 SUPERFAMILY SSF161111 8 208 1.44E-56 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 290 1.9E-77 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 Pfam PF01545 Cation efflux family 17 207 1.8E-51 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 SUPERFAMILY SSF160240 211 290 3.27E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 Gene3D G3DSA:3.30.70.1350 208 290 1.5E-15 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CLM_1432 25e44f770585a3a129fc6fe9a6a1d6d9 291 Gene3D G3DSA:1.20.1510.10 11 207 2.4E-64 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CLM_0646 a9e927985bf4006d319323d5a9345f31 149 SUPERFAMILY SSF55729 11 142 5.64E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0646 a9e927985bf4006d319323d5a9345f31 149 Pfam PF13508 Acetyltransferase (GNAT) domain 49 129 4.5E-13 T 13-10-2018 IPR000182 GNAT domain CLM_0646 a9e927985bf4006d319323d5a9345f31 149 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 28 112 0.004 T 13-10-2018 CLM_0646 a9e927985bf4006d319323d5a9345f31 149 Gene3D G3DSA:3.40.630.30 8 148 6.4E-19 T 13-10-2018 CLM_0773 48222f3388ad72c45eba4efb60e86fe6 232 Pfam PF04405 Domain of Unknown function (DUF542) 8 60 7.5E-20 T 13-10-2018 IPR019903 Repair of iron centres family CLM_0773 48222f3388ad72c45eba4efb60e86fe6 232 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 11 231 5.6E-76 T 13-10-2018 IPR019903 Repair of iron centres family CLM_0773 48222f3388ad72c45eba4efb60e86fe6 232 SUPERFAMILY SSF140683 1 66 2.22E-6 T 13-10-2018 IPR038062 ScdA-like, N-terminal domain superfamily CLM_0773 48222f3388ad72c45eba4efb60e86fe6 232 Gene3D G3DSA:1.10.3910.10 1 65 5.3E-7 T 13-10-2018 IPR038062 ScdA-like, N-terminal domain superfamily CLM_0773 48222f3388ad72c45eba4efb60e86fe6 232 Gene3D G3DSA:1.20.120.520 74 232 1.4E-17 T 13-10-2018 CLM_0773 48222f3388ad72c45eba4efb60e86fe6 232 Pfam PF01814 Hemerythrin HHE cation binding domain 86 232 7.0E-21 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 Gene3D G3DSA:3.30.450.20 50 277 1.2E-44 T 13-10-2018 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 SMART SM00283 392 667 1.4E-56 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 Gene3D G3DSA:1.10.287.950 308 667 1.0E-64 T 13-10-2018 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 Gene3D G3DSA:3.30.450.20 63 174 1.2E-44 T 13-10-2018 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 460 618 4.9E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 SUPERFAMILY SSF58104 339 666 6.28E-63 T 13-10-2018 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 Pfam PF02743 Cache domain 48 268 2.6E-28 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_3624 1caa63bc2a56e0f4f5188d88ed637a6a 668 SUPERFAMILY SSF103190 71 184 7.85E-14 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 Gene3D G3DSA:3.40.50.2300 2 131 1.3E-42 T 13-10-2018 CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 SMART SM00448 4 117 1.6E-49 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 SUPERFAMILY SSF46894 128 229 6.24E-33 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 Gene3D G3DSA:1.10.10.10 132 232 4.3E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 Pfam PF00072 Response regulator receiver domain 6 117 4.4E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 6.5E-30 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 SMART SM00862 152 228 5.0E-31 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2832 17e52589f3dc755a948e8d2c65bceb7d 232 SUPERFAMILY SSF52172 2 126 1.12E-46 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3850 dd7977f8a2b38036f28f5a933062eb86 431 SMART SM00228 303 377 4.0E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_3850 dd7977f8a2b38036f28f5a933062eb86 431 Gene3D G3DSA:2.30.42.10 302 385 1.2E-9 T 13-10-2018 CLM_3850 dd7977f8a2b38036f28f5a933062eb86 431 Pfam PF13180 PDZ domain 319 362 2.9E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_3850 dd7977f8a2b38036f28f5a933062eb86 431 SUPERFAMILY SSF50156 313 374 6.57E-11 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 SUPERFAMILY SSF140990 403 575 2.62E-51 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 Gene3D G3DSA:3.40.50.300 140 321 2.9E-66 T 13-10-2018 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 Gene3D G3DSA:1.20.58.760 396 576 1.4E-56 T 13-10-2018 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 187 319 3.2E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 Gene3D G3DSA:1.10.8.60 322 395 1.1E-18 T 13-10-2018 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 ProSitePatterns PS00674 AAA-protein family signature. 290 308 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 Pfam PF01434 Peptidase family M41 382 576 9.2E-54 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 576 30.171 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 SMART SM00382 183 322 3.5E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 110 576 3.8E-166 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CLM_0470 a904dd6f95134fea0c869d9348e3c21a 576 SUPERFAMILY SSF52540 145 388 1.18E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2188 160957c307ea5071fbfc5ecb6d941432 251 Pfam PF02361 Cobalt transport protein 8 210 4.3E-19 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component CLM_3891 5349de0c8bb77ded65d6894b918e6994 220 Gene3D G3DSA:3.40.50.300 1 123 9.5E-9 T 13-10-2018 CLM_3891 5349de0c8bb77ded65d6894b918e6994 220 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 12 125 2.3E-6 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_3891 5349de0c8bb77ded65d6894b918e6994 220 SUPERFAMILY SSF52540 3 153 1.13E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3405 d27b8e0f8c4f81918dd82dc06362b1dd 145 Hamap MF_00707 UPF0735 ACT domain-containing protein . 1 145 32.006 T 13-10-2018 IPR008310 UPF0735 ACT domain-containing protein CLM_3405 d27b8e0f8c4f81918dd82dc06362b1dd 145 PIRSF PIRSF025624 1 145 4.2E-58 T 13-10-2018 IPR008310 UPF0735 ACT domain-containing protein CLM_3405 d27b8e0f8c4f81918dd82dc06362b1dd 145 SUPERFAMILY SSF55021 68 140 5.35E-9 T 13-10-2018 CLM_1152 ecb1fccfdcd9282d6956e34433c9861a 181 Gene3D G3DSA:3.60.21.10 1 180 1.3E-67 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_1152 ecb1fccfdcd9282d6956e34433c9861a 181 SUPERFAMILY SSF56300 1 172 2.62E-39 T 13-10-2018 CLM_1152 ecb1fccfdcd9282d6956e34433c9861a 181 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 164 3.9E-31 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 CLM_1152 ecb1fccfdcd9282d6956e34433c9861a 181 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 160 8.4E-25 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 Hamap MF_00494 Probable transaldolase [tal]. 1 214 46.621 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 SUPERFAMILY SSF51569 1 213 1.36E-79 T 13-10-2018 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 208 4.6E-61 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 213 1.4E-98 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_1452 4eaa17b3155e37611bfad2981790fc5a 217 Gene3D G3DSA:3.20.20.70 1 217 5.7E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 1.8E-27 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 Gene3D G3DSA:3.30.160.100 1 95 6.7E-32 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 115 170 6.4E-31 T 13-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 1.2E-28 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 Gene3D G3DSA:3.30.505.50 128 174 1.2E-27 T 13-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 174 24.639 T 13-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid CLM_0220 7e25f9521dccce2cf25606fb992dd753 175 SUPERFAMILY SSF69754 2 108 3.92E-32 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CLM_1140 a9091e337e65bc64d86746ac41574cc7 284 SUPERFAMILY SSF55729 37 215 6.81E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1140 a9091e337e65bc64d86746ac41574cc7 284 Gene3D G3DSA:3.40.630.30 157 283 2.6E-11 T 13-10-2018 CLM_1140 a9091e337e65bc64d86746ac41574cc7 284 Gene3D G3DSA:3.40.630.30 4 156 8.5E-16 T 13-10-2018 CLM_1140 a9091e337e65bc64d86746ac41574cc7 284 SUPERFAMILY SSF55729 193 272 1.15E-7 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1140 a9091e337e65bc64d86746ac41574cc7 284 Pfam PF13673 Acetyltransferase (GNAT) domain 196 273 2.2E-7 T 13-10-2018 IPR000182 GNAT domain CLM_1140 a9091e337e65bc64d86746ac41574cc7 284 Pfam PF00583 Acetyltransferase (GNAT) family 50 133 4.4E-7 T 13-10-2018 IPR000182 GNAT domain CLM_1990 122025d474c020238f98a58884973088 334 Gene3D G3DSA:3.30.1330.10 6 152 9.5E-53 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_1990 122025d474c020238f98a58884973088 334 Pfam PF02769 AIR synthase related protein, C-terminal domain 159 310 1.6E-17 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CLM_1990 122025d474c020238f98a58884973088 334 SUPERFAMILY SSF55326 6 152 3.66E-33 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_1990 122025d474c020238f98a58884973088 334 PIRSF PIRSF005644 1 334 8.2E-120 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE CLM_1990 122025d474c020238f98a58884973088 334 Gene3D G3DSA:3.90.650.10 153 334 2.2E-46 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_1990 122025d474c020238f98a58884973088 334 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 149 2.1E-15 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CLM_1990 122025d474c020238f98a58884973088 334 SUPERFAMILY SSF56042 156 329 6.28E-36 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_1990 122025d474c020238f98a58884973088 334 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 5 334 4.6E-131 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE CLM_1810 7502e639858747a8f06b3ba9daaf05ce 201 SUPERFAMILY SSF52317 2 199 1.43E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1810 7502e639858747a8f06b3ba9daaf05ce 201 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 199 36.469 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CLM_1810 7502e639858747a8f06b3ba9daaf05ce 201 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 198 1.2E-76 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CLM_1810 7502e639858747a8f06b3ba9daaf05ce 201 Pfam PF00117 Glutamine amidotransferase class-I 4 194 2.9E-24 T 13-10-2018 IPR017926 Glutamine amidotransferase CLM_1810 7502e639858747a8f06b3ba9daaf05ce 201 PIRSF PIRSF000495 1 201 1.7E-72 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CLM_1810 7502e639858747a8f06b3ba9daaf05ce 201 Gene3D G3DSA:3.40.50.880 1 200 4.7E-74 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1108 cbc87c4f5853812ae1550eb94d25c4be 342 Pfam PF17179 4Fe-4S dicluster domain 224 320 2.5E-34 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1108 cbc87c4f5853812ae1550eb94d25c4be 342 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 306 317 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1108 cbc87c4f5853812ae1550eb94d25c4be 342 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 225 236 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1108 cbc87c4f5853812ae1550eb94d25c4be 342 SUPERFAMILY SSF46548 222 330 4.88E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_1108 cbc87c4f5853812ae1550eb94d25c4be 342 TIGRFAM TIGR02910 sulfite_red_A: sulfite reductase, subunit A 1 336 2.3E-187 T 13-10-2018 IPR014259 Sulphite reductase, subunit A CLM_1589 faa4e0fce82b992b30f733f9665dbae0 219 SUPERFAMILY SSF161098 13 201 5.23E-48 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1589 faa4e0fce82b992b30f733f9665dbae0 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 110 7.1E-30 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CLM_1589 faa4e0fce82b992b30f733f9665dbae0 219 Gene3D G3DSA:1.10.3720.10 1 217 3.6E-57 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1589 faa4e0fce82b992b30f733f9665dbae0 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 215 1.2E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_3085 15b7e4cc219b362a8cbc771fbfd06dea 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 337 3.0E-141 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CLM_3085 15b7e4cc219b362a8cbc771fbfd06dea 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 323 1.6E-97 T 13-10-2018 IPR016040 NAD(P)-binding domain CLM_3085 15b7e4cc219b362a8cbc771fbfd06dea 354 Gene3D G3DSA:3.90.25.10 203 331 5.6E-129 T 13-10-2018 CLM_3085 15b7e4cc219b362a8cbc771fbfd06dea 354 Gene3D G3DSA:3.40.50.720 4 323 5.6E-129 T 13-10-2018 CLM_3085 15b7e4cc219b362a8cbc771fbfd06dea 354 SUPERFAMILY SSF51735 1 350 5.0E-88 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 200 215 1.1E-8 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 184 200 1.1E-8 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 Pfam PF00027 Cyclic nucleotide-binding domain 40 126 3.6E-21 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 Gene3D G3DSA:1.10.10.10 155 236 1.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 Pfam PF13545 Crp-like helix-turn-helix domain 160 233 1.0E-17 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 SMART SM00100 20 139 1.8E-24 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 SMART SM00419 178 227 2.4E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 SUPERFAMILY SSF51206 15 154 4.58E-37 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 SUPERFAMILY SSF46785 158 235 3.48E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0771 d1715389aa2bdfa785402d4cd6ceb3ba 236 Gene3D G3DSA:2.60.120.10 4 154 3.2E-38 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0249 900cb0ef3db47638604e42b67949ae21 294 Gene3D G3DSA:3.40.50.10330 1 127 6.9E-31 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 CLM_0249 900cb0ef3db47638604e42b67949ae21 294 SMART SM00046 3 130 6.8E-4 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CLM_0249 900cb0ef3db47638604e42b67949ae21 294 Gene3D G3DSA:2.60.200.40 128 285 3.4E-39 T 13-10-2018 CLM_0249 900cb0ef3db47638604e42b67949ae21 294 SUPERFAMILY SSF111331 1 290 9.65E-73 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLM_0249 900cb0ef3db47638604e42b67949ae21 294 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 289 2.2E-57 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase CLM_0249 900cb0ef3db47638604e42b67949ae21 294 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 126 2.0E-29 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CLM_2802 8a49099d8187eb70caec532a5d7cfda1 216 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 200 2.1E-82 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CLM_2802 8a49099d8187eb70caec532a5d7cfda1 216 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CLM_2802 8a49099d8187eb70caec532a5d7cfda1 216 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 3 213 4.3E-91 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CLM_2802 8a49099d8187eb70caec532a5d7cfda1 216 SUPERFAMILY SSF51366 1 214 1.65E-73 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CLM_2802 8a49099d8187eb70caec532a5d7cfda1 216 Gene3D G3DSA:3.20.20.70 1 215 1.0E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2802 8a49099d8187eb70caec532a5d7cfda1 216 PIRSF PIRSF001461 1 216 3.8E-93 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CLM_3347 dac6500a9300514187ebfdc31df65b25 148 Gene3D G3DSA:1.10.10.410 91 147 1.6E-20 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CLM_3347 dac6500a9300514187ebfdc31df65b25 148 Gene3D G3DSA:1.10.1510.10 1 90 1.9E-25 T 13-10-2018 CLM_3347 dac6500a9300514187ebfdc31df65b25 148 Pfam PF09424 Yqey-like protein 4 146 2.8E-49 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 CLM_3347 dac6500a9300514187ebfdc31df65b25 148 SUPERFAMILY SSF89095 1 146 1.41E-38 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 CLM_1864 3377c6a8ae3cee02dbe87c1641b6d458 226 PIRSF PIRSF037984 1 222 8.9E-71 T 13-10-2018 IPR017342 S-adenosyl-L-methionine dependent methionine synthase, predicted CLM_1864 3377c6a8ae3cee02dbe87c1641b6d458 226 Gene3D G3DSA:3.40.109.40 1 199 1.0E-66 T 13-10-2018 CLM_1864 3377c6a8ae3cee02dbe87c1641b6d458 226 SUPERFAMILY SSF56507 15 193 2.22E-28 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 PRINTS PR00982 Lysyl-tRNA synthetase signature 238 251 2.0E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 PRINTS PR00982 Lysyl-tRNA synthetase signature 209 225 2.0E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 PRINTS PR00982 Lysyl-tRNA synthetase signature 256 273 2.0E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 2.0E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 PRINTS PR00982 Lysyl-tRNA synthetase signature 193 203 2.0E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 Pfam PF00152 tRNA synthetases class II (D, K and N) 157 497 9.6E-83 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 Pfam PF01336 OB-fold nucleic acid binding domain 63 139 2.3E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 500 44.728 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 500 6.8E-205 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 Gene3D G3DSA:3.30.930.10 152 504 9.8E-135 T 13-10-2018 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 SUPERFAMILY SSF50249 14 149 1.11E-40 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 Gene3D G3DSA:2.40.50.140 15 149 2.6E-41 T 13-10-2018 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 SUPERFAMILY SSF55681 156 498 4.27E-121 T 13-10-2018 CLM_4004 0e2cc2b306eda25ba20adea215314f6d 504 PIRSF PIRSF039101 2 504 3.4E-200 T 13-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 SUPERFAMILY SSF51161 6 178 1.94E-56 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 PIRSF PIRSF000441 2 195 3.5E-82 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 Gene3D G3DSA:2.160.10.10 70 192 8.5E-38 T 13-10-2018 CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 Gene3D G3DSA:1.10.3130.10 2 69 1.2E-20 T 13-10-2018 CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 129 157 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 120 154 1.4E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 74 111 3.0E-5 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_0256 462021c20d8dc12098b74e8ab43d06eb 198 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 10 169 1.2E-74 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CLM_2818 0d7addebba6a195c0df7165a06d1ed91 53 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 1 53 1.5E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2818 0d7addebba6a195c0df7165a06d1ed91 53 SUPERFAMILY SSF47413 1 52 4.44E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_3603 e028d7ed027de22e1b5c3554986a6585 361 Gene3D G3DSA:3.40.50.10690 119 361 1.7E-86 T 13-10-2018 CLM_3603 e028d7ed027de22e1b5c3554986a6585 361 Gene3D G3DSA:2.40.420.10 16 95 1.5E-11 T 13-10-2018 CLM_0948 be4987066a8085da5b7e9b31e7f090d2 201 SUPERFAMILY SSF47413 2 65 1.05E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0948 be4987066a8085da5b7e9b31e7f090d2 201 SMART SM00530 6 61 5.9E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0948 be4987066a8085da5b7e9b31e7f090d2 201 Pfam PF01381 Helix-turn-helix 7 61 3.7E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0948 be4987066a8085da5b7e9b31e7f090d2 201 Gene3D G3DSA:1.10.260.40 1 86 4.5E-21 T 13-10-2018 CLM_1315 a870f6fc83a78f0def648f75980b068c 264 Pfam PF00005 ABC transporter 23 177 1.1E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1315 a870f6fc83a78f0def648f75980b068c 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1315 a870f6fc83a78f0def648f75980b068c 264 SUPERFAMILY SSF52540 1 232 2.17E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1315 a870f6fc83a78f0def648f75980b068c 264 Gene3D G3DSA:3.40.50.300 1 256 1.9E-58 T 13-10-2018 CLM_1315 a870f6fc83a78f0def648f75980b068c 264 SMART SM00382 31 226 3.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3541 782f4ab8814c9d7694d352539fedf1a7 447 Pfam PF02386 Cation transport protein 39 434 1.6E-60 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CLM_3541 782f4ab8814c9d7694d352539fedf1a7 447 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 30 418 1.1E-110 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 CLM_3541 782f4ab8814c9d7694d352539fedf1a7 447 SUPERFAMILY SSF81324 230 305 4.71E-5 T 13-10-2018 CLM_1107 51c0f5719d81f53a6e72db66c3c60cdb 254 Gene3D G3DSA:1.20.1080.10 1 254 1.0E-85 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CLM_1107 51c0f5719d81f53a6e72db66c3c60cdb 254 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 76 85 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site CLM_1107 51c0f5719d81f53a6e72db66c3c60cdb 254 Pfam PF01226 Formate/nitrite transporter 11 249 8.1E-68 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 CLM_1107 51c0f5719d81f53a6e72db66c3c60cdb 254 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 159 169 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site CLM_3335 e3b5f59ff9f9218f751ebc0afca9e98f 356 Gene3D G3DSA:3.30.200.20 8 112 5.7E-31 T 13-10-2018 CLM_3335 e3b5f59ff9f9218f751ebc0afca9e98f 356 SUPERFAMILY SSF56112 13 339 4.23E-51 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_3335 e3b5f59ff9f9218f751ebc0afca9e98f 356 Pfam PF01636 Phosphotransferase enzyme family 67 271 1.1E-9 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CLM_3335 e3b5f59ff9f9218f751ebc0afca9e98f 356 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 36 339 3.5E-78 T 13-10-2018 IPR014255 Spore coat protein CotS CLM_3335 e3b5f59ff9f9218f751ebc0afca9e98f 356 Gene3D G3DSA:3.90.1200.10 113 350 1.8E-53 T 13-10-2018 CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 SUPERFAMILY SSF52113 217 306 7.29E-10 T 13-10-2018 IPR036420 BRCT domain superfamily CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 SMART SM00479 2 166 3.7E-12 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 Gene3D G3DSA:3.30.420.10 1 170 3.0E-35 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 Gene3D G3DSA:3.40.50.10190 195 307 3.8E-18 T 13-10-2018 IPR036420 BRCT domain superfamily CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 217 290 1.1E-7 T 13-10-2018 IPR001357 BRCT domain CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 Pfam PF00929 Exonuclease 4 156 8.3E-22 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_0308 85a9641052ae99ec1fc450157318dbb3 309 SUPERFAMILY SSF53098 1 189 1.25E-39 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_1156 847f9e871ed677deebdf3fad2ac28fb3 272 Gene3D G3DSA:1.10.150.320 177 252 4.6E-6 T 13-10-2018 CLM_1156 847f9e871ed677deebdf3fad2ac28fb3 272 SUPERFAMILY SSF47781 182 255 4.45E-11 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_1156 847f9e871ed677deebdf3fad2ac28fb3 272 Pfam PF12836 Helix-hairpin-helix motif 190 252 2.6E-10 T 13-10-2018 CLM_0475 108407aa14adf7127080494998457808 417 SUPERFAMILY SSF47413 5 63 6.57E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0475 108407aa14adf7127080494998457808 417 Gene3D G3DSA:1.10.260.40 4 65 4.7E-13 T 13-10-2018 CLM_0475 108407aa14adf7127080494998457808 417 SMART SM00530 9 63 3.4E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0475 108407aa14adf7127080494998457808 417 SMART SM00028 265 298 35.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 SMART SM00028 344 377 250.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 SMART SM00028 148 181 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 SMART SM00028 384 417 0.018 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 SMART SM00028 188 221 300.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 Gene3D G3DSA:1.25.40.10 316 417 1.4E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 SUPERFAMILY SSF48452 143 298 5.24E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 SUPERFAMILY SSF48452 259 416 3.48E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0475 108407aa14adf7127080494998457808 417 Pfam PF12844 Helix-turn-helix domain 7 68 4.3E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3156 c8596d81d9287c5ac628f01ba3e99373 126 SUPERFAMILY SSF46785 5 79 2.73E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3156 c8596d81d9287c5ac628f01ba3e99373 126 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 1.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3156 c8596d81d9287c5ac628f01ba3e99373 126 Gene3D G3DSA:1.10.10.10 8 125 1.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3156 c8596d81d9287c5ac628f01ba3e99373 126 SMART SM00345 16 75 2.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2085 51a158f3cfd9acd2d9766e4715d9dd93 227 Pfam PF00149 Calcineurin-like phosphoesterase 2 161 1.0E-4 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CLM_2085 51a158f3cfd9acd2d9766e4715d9dd93 227 Gene3D G3DSA:3.60.21.10 1 179 1.9E-6 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_2085 51a158f3cfd9acd2d9766e4715d9dd93 227 SUPERFAMILY SSF56300 2 211 1.42E-13 T 13-10-2018 CLM_3300 f5e0744117a19248c0eedf2758d03122 763 SUPERFAMILY SSF52540 202 755 2.8E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3300 f5e0744117a19248c0eedf2758d03122 763 Gene3D G3DSA:1.10.10.160 435 513 1.3E-7 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CLM_3300 f5e0744117a19248c0eedf2758d03122 763 Gene3D G3DSA:3.40.50.300 514 577 1.3E-7 T 13-10-2018 CLM_3300 f5e0744117a19248c0eedf2758d03122 763 Gene3D G3DSA:3.40.50.300 598 763 1.2E-47 T 13-10-2018 CLM_3300 f5e0744117a19248c0eedf2758d03122 763 Gene3D G3DSA:3.40.50.300 201 381 1.1E-14 T 13-10-2018 CLM_3300 f5e0744117a19248c0eedf2758d03122 763 Pfam PF13245 AAA domain 213 574 1.9E-12 T 13-10-2018 CLM_4053 4fa5f38c5a057e5f6b1980f015fa8c87 124 PIRSF PIRSF014543 1 124 3.5E-25 T 13-10-2018 IPR016621 Uncharacterised conserved protein UCP014543 CLM_4053 4fa5f38c5a057e5f6b1980f015fa8c87 124 Pfam PF12646 Domain of unknown function (DUF3783) 64 119 7.8E-17 T 13-10-2018 IPR016621 Uncharacterised conserved protein UCP014543 CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 Gene3D G3DSA:3.30.1340.20 65 172 1.5E-37 T 13-10-2018 IPR035922 3H domain superfamily CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 Pfam PF02829 3H domain 72 168 1.4E-35 T 13-10-2018 IPR004173 3H domain GO:0036094 CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 ProDom PD469575 TRANSCRIPTION DNA-BINDING REGULATION TRANSCRIPTIONAL REGULATOR REPRESSOR FAMILY BIOTIN REGULATOR 3H 76 169 1.0E-28 T 13-10-2018 IPR004173 3H domain GO:0036094 CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 SUPERFAMILY SSF75500 68 170 8.37E-34 T 13-10-2018 IPR035922 3H domain superfamily CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 PIRSF PIRSF037847 1 171 6.2E-71 T 13-10-2018 IPR026043 Transcription repressor NadR CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 Gene3D G3DSA:1.10.10.10 1 61 2.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 Pfam PF08279 HTH domain 6 58 6.7E-14 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_0016 b5b73fc745e31448f408b49b3d3b6c13 173 SUPERFAMILY SSF46785 1 61 1.07E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 209 216 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 Pfam PF00171 Aldehyde dehydrogenase family 9 428 1.5E-81 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 Gene3D G3DSA:3.40.605.10 13 428 7.7E-174 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 Gene3D G3DSA:3.40.309.10 213 408 7.7E-174 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 SUPERFAMILY SSF53720 4 437 3.4E-117 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 237 248 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CLM_1257 8a7f21eef6f4c27102128d5dff8a2cb1 456 PIRSF PIRSF036492 1 456 5.1E-189 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Gene3D G3DSA:3.30.200.20 1 89 2.0E-29 T 13-10-2018 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Pfam PF00069 Protein kinase domain 10 258 2.8E-56 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Gene3D G3DSA:1.10.510.10 91 281 2.8E-55 T 13-10-2018 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 SMART SM00220 10 267 1.8E-72 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Gene3D G3DSA:3.30.10.20 441 508 2.0E-19 T 13-10-2018 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Gene3D G3DSA:3.30.10.20 510 574 6.7E-11 T 13-10-2018 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Gene3D G3DSA:3.30.10.20 371 440 9.9E-15 T 13-10-2018 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 SUPERFAMILY SSF56112 6 264 6.61E-83 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 SMART SM00740 508 576 3.8E-7 T 13-10-2018 IPR005543 PASTA domain CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 SMART SM00740 439 505 5.6E-13 T 13-10-2018 IPR005543 PASTA domain CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 SMART SM00740 372 438 2.4E-16 T 13-10-2018 IPR005543 PASTA domain CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 SUPERFAMILY SSF54184 375 437 3.53E-6 T 13-10-2018 CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Pfam PF03793 PASTA domain 376 437 2.8E-12 T 13-10-2018 IPR005543 PASTA domain CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Pfam PF03793 PASTA domain 442 504 6.9E-15 T 13-10-2018 IPR005543 PASTA domain CLM_2804 b1098e847b50690d5da5b65f68466e4c 654 Pfam PF03793 PASTA domain 513 576 1.7E-12 T 13-10-2018 IPR005543 PASTA domain CLM_0150 740d6f976f4ad43e933d0d13eb157f15 424 Gene3D G3DSA:3.40.190.10 54 353 1.0E-46 T 13-10-2018 CLM_0150 740d6f976f4ad43e933d0d13eb157f15 424 Pfam PF13416 Bacterial extracellular solute-binding protein 54 348 1.0E-19 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CLM_0150 740d6f976f4ad43e933d0d13eb157f15 424 Gene3D G3DSA:3.40.190.10 147 403 1.0E-46 T 13-10-2018 CLM_0150 740d6f976f4ad43e933d0d13eb157f15 424 SUPERFAMILY SSF53850 36 420 4.67E-39 T 13-10-2018 CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 SUPERFAMILY SSF102114 14 297 1.33E-58 T 13-10-2018 CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 SMART SM00729 52 259 3.2E-29 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 Gene3D G3DSA:3.20.20.70 1 344 4.4E-123 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 Pfam PF04055 Radical SAM superfamily 56 214 3.2E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 SMART SM00876 227 320 0.0043 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 TIGRFAM TIGR03956 rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE 4 341 4.4E-169 T 13-10-2018 IPR024021 [FeFe]-hydrogenase maturation HydE, radical SAM CLM_4074 9f0c91e23d0bbbd4a5c4693592bfb824 348 PIRSF PIRSF004762 1 329 9.0E-72 T 13-10-2018 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 PRINTS PR00173 Glutamate-aspartate symporter signature 43 63 4.3E-8 T 13-10-2018 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 PRINTS PR00173 Glutamate-aspartate symporter signature 2 22 4.3E-8 T 13-10-2018 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 PRINTS PR00173 Glutamate-aspartate symporter signature 335 355 4.3E-8 T 13-10-2018 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 PRINTS PR00173 Glutamate-aspartate symporter signature 271 297 4.3E-8 T 13-10-2018 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 PRINTS PR00173 Glutamate-aspartate symporter signature 73 98 4.3E-8 T 13-10-2018 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 Gene3D G3DSA:1.10.3860.10 1 384 2.9E-46 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 SUPERFAMILY SSF118215 8 378 1.18E-69 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_0285 79c6ffeee2b0206c63a85d837b39828d 387 Pfam PF00375 Sodium:dicarboxylate symporter family 8 378 6.0E-73 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CLM_2897 6eef50b906b928cfcebf7bceb6b13ebb 338 SUPERFAMILY SSF52402 56 274 9.78E-22 T 13-10-2018 CLM_2897 6eef50b906b928cfcebf7bceb6b13ebb 338 Gene3D G3DSA:3.40.50.620 29 319 1.7E-17 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2897 6eef50b906b928cfcebf7bceb6b13ebb 338 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 70 133 4.1E-6 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CLM_0984 acc096e14e2215b415b56c5b1c776769 305 SUPERFAMILY SSF52540 3 227 5.11E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0984 acc096e14e2215b415b56c5b1c776769 305 SMART SM00382 29 230 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0984 acc096e14e2215b415b56c5b1c776769 305 Pfam PF00005 ABC transporter 20 164 6.9E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0984 acc096e14e2215b415b56c5b1c776769 305 Gene3D G3DSA:3.40.50.300 1 242 2.3E-62 T 13-10-2018 CLM_0386 9ff549a451f22031752b071cf137bf82 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 8.0E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0386 9ff549a451f22031752b071cf137bf82 230 SUPERFAMILY SSF46894 129 227 1.19E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0386 9ff549a451f22031752b071cf137bf82 230 SMART SM00448 3 113 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0386 9ff549a451f22031752b071cf137bf82 230 Gene3D G3DSA:3.40.50.2300 1 124 2.8E-31 T 13-10-2018 CLM_0386 9ff549a451f22031752b071cf137bf82 230 Pfam PF00072 Response regulator receiver domain 5 113 2.0E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0386 9ff549a451f22031752b071cf137bf82 230 Gene3D G3DSA:1.10.10.10 125 229 1.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0386 9ff549a451f22031752b071cf137bf82 230 SUPERFAMILY SSF52172 2 124 1.34E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0386 9ff549a451f22031752b071cf137bf82 230 SMART SM00862 151 226 2.6E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_3701 8c4c92bf576ae9966f73ed17ecb0d38c 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 22.322 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CLM_3701 8c4c92bf576ae9966f73ed17ecb0d38c 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 1.8E-14 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CLM_3701 8c4c92bf576ae9966f73ed17ecb0d38c 95 SUPERFAMILY SSF141000 2 93 3.79E-27 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 CLM_3701 8c4c92bf576ae9966f73ed17ecb0d38c 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 5.4E-30 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CLM_3701 8c4c92bf576ae9966f73ed17ecb0d38c 95 Gene3D G3DSA:1.10.20.60 1 93 1.9E-25 T 13-10-2018 CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 Gene3D G3DSA:3.40.50.300 4 319 2.7E-101 T 13-10-2018 CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 Pfam PF00005 ABC transporter 28 178 3.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 SUPERFAMILY SSF52540 6 250 9.03E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 297 5.7E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 SMART SM00382 36 228 1.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3559 6bafead3956e854e579ae3a95cbf1981 319 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 229 317 5.3E-29 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CLM_2235 1b340bb5f0b1f05b86c9bea153db40de 272 Gene3D G3DSA:3.40.190.10 137 229 4.1E-74 T 13-10-2018 CLM_2235 1b340bb5f0b1f05b86c9bea153db40de 272 SMART SM00062 46 267 7.8E-54 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_2235 1b340bb5f0b1f05b86c9bea153db40de 272 Gene3D G3DSA:3.40.190.10 44 262 4.1E-74 T 13-10-2018 CLM_2235 1b340bb5f0b1f05b86c9bea153db40de 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 263 2.2E-59 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_2235 1b340bb5f0b1f05b86c9bea153db40de 272 SUPERFAMILY SSF53850 9 263 1.05E-63 T 13-10-2018 CLM_0306 ca926c0caf3ee79642c29d588513f5dc 300 SUPERFAMILY SSF55729 27 247 1.06E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0306 ca926c0caf3ee79642c29d588513f5dc 300 Pfam PF13527 Acetyltransferase (GNAT) domain 29 139 3.5E-13 T 13-10-2018 CLM_0306 ca926c0caf3ee79642c29d588513f5dc 300 Gene3D G3DSA:3.40.630.30 17 179 2.2E-24 T 13-10-2018 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 Gene3D G3DSA:3.40.50.1260 174 387 1.6E-164 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 Pfam PF00162 Phosphoglycerate kinase 10 387 4.7E-166 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 141 163 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 317 342 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 12 28 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 373 390 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 33 55 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 113 128 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 195 214 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 350 361 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PRINTS PR00477 Phosphoglycerate kinase family signature 172 194 3.8E-96 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 17 27 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 Gene3D G3DSA:3.40.50.1260 11 395 1.6E-164 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 PIRSF PIRSF000724 1 398 2.7E-153 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 SUPERFAMILY SSF53748 4 398 1.13E-159 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0277 8eaa8c6815867b939b4f21212ac7655a 398 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 7 397 42.989 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 SUPERFAMILY SSF52777 195 431 1.67E-27 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 SUPERFAMILY SSF52777 1224 1468 7.56E-26 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:3.40.50.12780 449 849 3.6E-125 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:3.30.559.30 1210 1472 1.8E-44 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 SUPERFAMILY SSF47336 956 1025 6.15E-11 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 483 879 3.2E-134 T 13-10-2018 IPR010071 Amino acid adenylation domain CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Pfam PF00550 Phosphopantetheine attachment site 962 1024 2.7E-7 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1344 1492 1.6E-34 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 SUPERFAMILY SSF52777 11 185 1.33E-29 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 ProSitePatterns PS00012 Phosphopantetheine attachment site. 984 999 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Pfam PF00668 Condensation domain 7 439 3.9E-77 T 13-10-2018 IPR001242 Condensation domain CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Pfam PF00668 Condensation domain 1050 1481 1.7E-68 T 13-10-2018 IPR001242 Condensation domain CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Pfam PF13193 AMP-binding enzyme C-terminal domain 863 936 6.0E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 SUPERFAMILY SSF56801 421 973 6.41E-140 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 SUPERFAMILY SSF52777 1047 1219 3.45E-27 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:3.30.559.10 1030 1209 1.5E-37 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Pfam PF00501 AMP-binding enzyme 462 855 1.9E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 ProSitePatterns PS00455 Putative AMP-binding domain signature. 601 612 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:3.30.559.10 12 196 3.1E-28 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:3.30.300.30 850 951 3.0E-27 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:3.30.559.30 197 448 4.2E-33 T 13-10-2018 CLM_0369 b3a92701f3264e7403dc33271de56ee5 1494 Gene3D G3DSA:1.10.1200.10 959 1029 5.3E-13 T 13-10-2018 IPR036736 ACP-like superfamily CLM_0180 1aaafc16b9b7cd0153727a2143d93c36 305 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 54 301 6.0E-88 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 CLM_0180 1aaafc16b9b7cd0153727a2143d93c36 305 Pfam PF07136 Protein of unknown function (DUF1385) 54 297 3.1E-92 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 3.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 3.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.5E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 61 324 2.4E-33 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 Gene3D G3DSA:3.40.50.2300 161 290 3.3E-78 T 13-10-2018 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 Gene3D G3DSA:1.10.260.40 1 60 1.7E-24 T 13-10-2018 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 Gene3D G3DSA:3.40.50.2300 61 306 3.3E-78 T 13-10-2018 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 SUPERFAMILY SSF53822 61 331 2.55E-83 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 SMART SM00354 2 72 4.1E-37 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CLM_0143 c3daaaa38e403b4adb27a0adfe2774d3 332 SUPERFAMILY SSF47413 3 60 8.25E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1375 c2ba246bc8184b6d4da2031843d03689 194 Gene3D G3DSA:3.40.50.1000 1 173 3.7E-13 T 13-10-2018 IPR023214 HAD superfamily CLM_1375 c2ba246bc8184b6d4da2031843d03689 194 PIRSF PIRSF021362 3 193 6.2E-61 T 13-10-2018 IPR009206 Nucleotidase, putative CLM_1375 c2ba246bc8184b6d4da2031843d03689 194 Pfam PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 6 183 1.0E-15 T 13-10-2018 IPR010708 5'(3')-deoxyribonucleotidase GO:0008253|GO:0009264 Reactome: R-HSA-73621 CLM_1375 c2ba246bc8184b6d4da2031843d03689 194 SUPERFAMILY SSF56784 5 164 4.04E-19 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3711 1f3f2a83b57ed6f150052cbe606aff49 144 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 15 142 3.5E-38 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 Gene3D G3DSA:3.30.420.40 150 313 5.6E-135 T 13-10-2018 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 Pfam PF06723 MreB/Mbl protein 8 331 3.8E-157 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 SUPERFAMILY SSF53067 8 144 1.4E-41 T 13-10-2018 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 65 88 1.1E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 183 203 1.1E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 296 322 1.1E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 128 147 1.1E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 45 63 1.1E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 Gene3D G3DSA:3.30.420.40 10 323 5.6E-135 T 13-10-2018 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 SUPERFAMILY SSF53067 145 327 8.82E-52 T 13-10-2018 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 Gene3D G3DSA:3.90.640.10 182 255 5.6E-135 T 13-10-2018 CLM_3398 aaaa4b82b78829788632f4586d5623a9 336 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 331 7.7E-157 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 PRINTS PR00175 Sodium/alanine symporter signature 347 369 4.8E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 PRINTS PR00175 Sodium/alanine symporter signature 180 198 4.8E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 PRINTS PR00175 Sodium/alanine symporter signature 303 321 4.8E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 PRINTS PR00175 Sodium/alanine symporter signature 208 227 4.8E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 PRINTS PR00175 Sodium/alanine symporter signature 406 426 4.8E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 PRINTS PR00175 Sodium/alanine symporter signature 89 111 4.8E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 Pfam PF01235 Sodium:alanine symporter family 52 441 2.8E-140 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 89 104 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2883 48325ae58d780ebb3fd74b0b2a2f03a9 455 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 437 6.0E-148 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_0705 dd486d217335b77d6c9f58f8363f97cb 407 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 1.4E-23 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 CLM_0705 dd486d217335b77d6c9f58f8363f97cb 407 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 196 406 4.1E-78 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 CLM_0705 dd486d217335b77d6c9f58f8363f97cb 407 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 406 1.0E-148 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 CLM_0705 dd486d217335b77d6c9f58f8363f97cb 407 Pfam PF07670 Nucleoside recognition 94 190 2.5E-8 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_0172 8bed0b32639da89663d9b88a08349859 326 Gene3D G3DSA:3.40.50.620 2 212 1.2E-42 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0172 8bed0b32639da89663d9b88a08349859 326 Pfam PF05670 Domain of unknown function (DUF814) 226 305 2.1E-6 T 13-10-2018 IPR008532 Domain of unknown function DUF814 CLM_0172 8bed0b32639da89663d9b88a08349859 326 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 3 140 3.3E-11 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 CLM_0172 8bed0b32639da89663d9b88a08349859 326 SUPERFAMILY SSF52402 2 226 1.17E-32 T 13-10-2018 CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 SMART SM00862 151 226 5.2E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 SUPERFAMILY SSF46894 134 226 4.64E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 Gene3D G3DSA:1.10.10.10 130 227 9.5E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 Gene3D G3DSA:3.40.50.2300 1 129 4.5E-32 T 13-10-2018 CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 SUPERFAMILY SSF52172 2 125 4.41E-37 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 Pfam PF00072 Response regulator receiver domain 5 113 7.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 2.9E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0714 1c02b40a6f9f532f15086009b8c87e1a 227 SMART SM00448 3 113 7.0E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2910 fba9da4478548db79fb8bcd14493af64 407 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 119 261 6.2E-6 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_2910 fba9da4478548db79fb8bcd14493af64 407 SUPERFAMILY SSF51735 114 256 7.89E-13 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2910 fba9da4478548db79fb8bcd14493af64 407 Gene3D G3DSA:3.40.50.720 102 267 4.1E-26 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 SUPERFAMILY SSF51971 447 690 2.3E-57 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Pfam PF00037 4Fe-4S binding domain 830 852 1.4E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Pfam PF00037 4Fe-4S binding domain 286 307 5.3E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 SUPERFAMILY SSF46548 780 853 7.32E-10 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 SUPERFAMILY SSF54862 256 310 1.19E-6 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 355 431 1.2E-20 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Gene3D G3DSA:3.50.50.60 446 574 2.8E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Gene3D G3DSA:3.50.50.60 576 777 4.1E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 292 303 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 PRINTS PR00419 Adrenodoxin reductase family signature 581 595 5.5E-21 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 PRINTS PR00419 Adrenodoxin reductase family signature 472 485 5.5E-21 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 PRINTS PR00419 Adrenodoxin reductase family signature 449 471 5.5E-21 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 PRINTS PR00419 Adrenodoxin reductase family signature 514 524 5.5E-21 T 13-10-2018 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 448 739 4.5E-29 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 SUPERFAMILY SSF46548 332 457 3.77E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Gene3D G3DSA:1.10.1060.10 342 445 3.0E-27 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0512 d314ac204373b89c2dff1b46280b2c2f 892 Gene3D G3DSA:3.30.70.20 269 331 2.1E-6 T 13-10-2018 CLM_2172 fd4f0def249867b32abe0e67350e8529 273 Pfam PF13411 MerR HTH family regulatory protein 6 74 1.1E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2172 fd4f0def249867b32abe0e67350e8529 273 Gene3D G3DSA:1.10.1660.10 4 114 1.7E-24 T 13-10-2018 CLM_2172 fd4f0def249867b32abe0e67350e8529 273 SUPERFAMILY SSF46955 4 108 1.14E-22 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_2172 fd4f0def249867b32abe0e67350e8529 273 Gene3D G3DSA:3.20.80.10 118 269 1.4E-5 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2172 fd4f0def249867b32abe0e67350e8529 273 SMART SM00422 6 75 1.9E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2172 fd4f0def249867b32abe0e67350e8529 273 SUPERFAMILY SSF55136 137 265 9.42E-14 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1607 d24319104574c15c8c0a4028408bde3c 594 Gene3D G3DSA:1.10.390.10 429 586 9.6E-48 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1607 d24319104574c15c8c0a4028408bde3c 594 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 377 397 4.8E-19 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 504 520 4.8E-19 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 436 447 4.8E-19 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 415 431 4.8E-19 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 Gene3D G3DSA:3.10.170.10 260 428 1.0E-41 T 13-10-2018 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 Pfam PF03413 Peptidase propeptide and YPEB domain 148 212 3.9E-8 T 13-10-2018 IPR025711 PepSY domain CLM_1607 d24319104574c15c8c0a4028408bde3c 594 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 85 133 7.3E-8 T 13-10-2018 IPR011096 FTP domain CLM_1607 d24319104574c15c8c0a4028408bde3c 594 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 261 424 4.4E-46 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 SUPERFAMILY SSF55486 259 586 6.96E-77 T 13-10-2018 CLM_1607 d24319104574c15c8c0a4028408bde3c 594 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 427 586 5.2E-50 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00145 Argininosuccinate lyase family signature 192 208 4.4E-61 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00145 Argininosuccinate lyase family signature 230 254 4.4E-61 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00145 Argininosuccinate lyase family signature 101 123 4.4E-61 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00145 Argininosuccinate lyase family signature 274 290 4.4E-61 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00145 Argininosuccinate lyase family signature 309 328 4.4E-61 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00145 Argininosuccinate lyase family signature 141 161 4.4E-61 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 431 1.5E-179 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 Gene3D G3DSA:1.10.40.30 359 431 4.0E-179 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 ProSitePatterns PS00163 Fumarate lyases signature. 274 283 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 Pfam PF00206 Lyase 6 299 1.7E-73 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 428 40.047 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 Gene3D G3DSA:1.20.200.10 119 358 4.0E-179 T 13-10-2018 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 Pfam PF14698 Argininosuccinate lyase C-terminal 362 430 4.7E-22 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 SUPERFAMILY SSF48557 3 430 6.13E-134 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 1.4E-25 T 13-10-2018 IPR000362 Fumarate lyase family CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00149 Fumarate lyase superfamily signature 230 257 1.4E-25 T 13-10-2018 IPR000362 Fumarate lyase family CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00149 Fumarate lyase superfamily signature 274 290 1.4E-25 T 13-10-2018 IPR000362 Fumarate lyase family CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 PRINTS PR00149 Fumarate lyase superfamily signature 146 164 1.4E-25 T 13-10-2018 IPR000362 Fumarate lyase family CLM_3034 fb72a4159529c6cfae509ea135e1ca93 440 Gene3D G3DSA:1.10.275.10 25 228 4.0E-179 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 Pfam PF04055 Radical SAM superfamily 98 239 1.6E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 SMART SM00729 92 297 0.0042 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 Gene3D G3DSA:3.20.20.70 84 389 1.1E-51 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 Pfam PF13394 4Fe-4S single cluster domain 96 200 1.1E-14 T 13-10-2018 CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 PIRSF PIRSF037420 284 406 7.0E-5 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 PIRSF PIRSF037420 78 309 1.3E-35 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 SUPERFAMILY SSF102114 94 382 1.23E-51 T 13-10-2018 CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 Pfam PF13186 Iron-sulfur cluster-binding domain 308 376 6.2E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_0614 33b8f0d54d5e30965f9ecd3f7a00879c 413 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 308 390 3.8E-11 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 36 77 2.0E-16 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 Gene3D G3DSA:2.40.50.100 28 93 5.2E-27 T 13-10-2018 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 9 92 27.66 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 PRINTS PR00063 Ribosomal protein L27 signature 62 86 2.5E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 PRINTS PR00063 Ribosomal protein L27 signature 12 36 2.5E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 PRINTS PR00063 Ribosomal protein L27 signature 37 61 2.5E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 SUPERFAMILY SSF110324 10 91 1.12E-33 T 13-10-2018 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 Pfam PF01016 Ribosomal L27 protein 10 87 2.2E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 ProSitePatterns PS00831 Ribosomal protein L27 signature. 42 56 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3382 868811a9dfb16df491da0bdccbb31ba2 100 TIGRFAM TIGR00062 L27: ribosomal protein bL27 9 90 1.8E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 SUPERFAMILY SSF58014 67 159 1.57E-25 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 Hamap MF_01151 Protein GrpE [grpE]. 22 214 19.156 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 PRINTS PR00773 GrpE protein signature 88 104 2.4E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 PRINTS PR00773 GrpE protein signature 193 212 2.4E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 PRINTS PR00773 GrpE protein signature 116 131 2.4E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 PRINTS PR00773 GrpE protein signature 166 181 2.4E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 Pfam PF01025 GrpE 55 213 1.1E-44 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 ProSitePatterns PS01071 grpE protein signature. 169 212 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 SUPERFAMILY SSF51064 167 213 1.28E-13 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 Gene3D G3DSA:2.30.22.10 159 214 6.3E-17 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CLM_3355 a15800d20e62fe3f1785547e145e56cb 214 Gene3D G3DSA:3.90.20.20 47 158 6.0E-28 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 SUPERFAMILY SSF118215 23 405 9.68E-88 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 Pfam PF00375 Sodium:dicarboxylate symporter family 24 405 3.2E-100 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 PRINTS PR00173 Glutamate-aspartate symporter signature 297 323 8.8E-16 T 13-10-2018 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 8.8E-16 T 13-10-2018 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 PRINTS PR00173 Glutamate-aspartate symporter signature 195 214 8.8E-16 T 13-10-2018 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 8.8E-16 T 13-10-2018 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 PRINTS PR00173 Glutamate-aspartate symporter signature 360 380 8.8E-16 T 13-10-2018 CLM_2180 a15c6a127a37033cc84b68cc90cb63c2 431 Gene3D G3DSA:1.10.3860.10 10 410 9.3E-89 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_2109 247cf092483de25aa959560d7a214585 127 Pfam PF06686 Stage III sporulation protein AC/AD protein family 71 125 1.2E-19 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family CLM_2109 247cf092483de25aa959560d7a214585 127 Pfam PF06686 Stage III sporulation protein AC/AD protein family 3 57 7.2E-12 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family CLM_2109 247cf092483de25aa959560d7a214585 127 TIGRFAM TIGR02849 spore_III_AD: stage III sporulation protein AD 27 127 9.5E-40 T 13-10-2018 IPR014211 Stage III sporulation protein AD CLM_3525 e85e8b392ce7c4c821684bce53365b32 300 Gene3D G3DSA:3.40.718.10 2 299 1.6E-101 T 13-10-2018 CLM_3525 e85e8b392ce7c4c821684bce53365b32 300 PIRSF PIRSF000428 1 300 1.1E-82 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_3525 e85e8b392ce7c4c821684bce53365b32 300 SUPERFAMILY SSF53659 4 297 7.67E-59 T 13-10-2018 CLM_3525 e85e8b392ce7c4c821684bce53365b32 300 Pfam PF01515 Phosphate acetyl/butaryl transferase 76 294 1.5E-45 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.7E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 SMART SM00345 8 67 1.9E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 SUPERFAMILY SSF46785 3 71 5.28E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 Gene3D G3DSA:1.10.10.10 1 67 1.9E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 TIGRFAM TIGR02404 trehalos_R_Bsub: trehalose operon repressor 4 235 3.0E-90 T 13-10-2018 IPR012770 Trehalose operon transcriptional repressor CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 Gene3D G3DSA:3.40.1410.10 87 227 4.2E-33 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 SUPERFAMILY SSF64288 73 232 1.73E-42 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 Pfam PF07702 UTRA domain 90 228 1.2E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 SMART SM00866 89 228 1.1E-28 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 5.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2206 de99f735e5413b4f3d4fd6d62a320065 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 5.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0856 d7a50c0f7e7e26fbc0af2a380187434a 332 Gene3D G3DSA:3.40.47.10 1 194 3.9E-42 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_0856 d7a50c0f7e7e26fbc0af2a380187434a 332 SUPERFAMILY SSF53901 4 332 4.23E-34 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_0856 d7a50c0f7e7e26fbc0af2a380187434a 332 Gene3D G3DSA:3.40.47.10 208 332 1.0E-22 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_0856 d7a50c0f7e7e26fbc0af2a380187434a 332 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 111 188 1.2E-10 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_0856 d7a50c0f7e7e26fbc0af2a380187434a 332 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 243 332 7.1E-19 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 Gene3D G3DSA:3.40.50.150 65 256 1.7E-62 T 13-10-2018 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 SUPERFAMILY SSF47757 2 65 4.58E-13 T 13-10-2018 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 PRINTS PR00996 Glutamate methyltransferase family signature 59 71 3.4E-39 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 PRINTS PR00996 Glutamate methyltransferase family signature 195 209 3.4E-39 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 PRINTS PR00996 Glutamate methyltransferase family signature 22 35 3.4E-39 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 PRINTS PR00996 Glutamate methyltransferase family signature 129 145 3.4E-39 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 PRINTS PR00996 Glutamate methyltransferase family signature 97 117 3.4E-39 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 PRINTS PR00996 Glutamate methyltransferase family signature 214 237 3.4E-39 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 Pfam PF01739 CheR methyltransferase, SAM binding domain 66 242 1.2E-58 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 SUPERFAMILY SSF53335 66 255 1.37E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 Gene3D G3DSA:1.10.155.10 1 64 3.3E-6 T 13-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 SMART SM00138 2 254 7.8E-87 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CLM_3115 74f2b561fbe781432b05ceb4c34b2110 256 Pfam PF03705 CheR methyltransferase, all-alpha domain 2 53 2.8E-14 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CLM_2455 7f51a9ce757fba8dd1fcfd26f912b8c8 101 PIRSF PIRSF002599 5 100 3.4E-12 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CLM_2455 7f51a9ce757fba8dd1fcfd26f912b8c8 101 Pfam PF06961 Protein of unknown function (DUF1294) 26 80 2.3E-25 T 13-10-2018 IPR010718 Protein of unknown function DUF1294 CLM_3725 d52f36a10143967a884e877089038daf 412 Pfam PF02515 CoA-transferase family III 9 382 1.3E-84 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 CLM_3725 d52f36a10143967a884e877089038daf 412 SUPERFAMILY SSF89796 4 406 1.14E-95 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CLM_3725 d52f36a10143967a884e877089038daf 412 Gene3D G3DSA:3.30.1540.10 236 335 1.1E-96 T 13-10-2018 CLM_3725 d52f36a10143967a884e877089038daf 412 Gene3D G3DSA:3.40.50.10540 9 400 1.1E-96 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CLM_3709 ee1b455511d05391a40d30ddfca06fb6 667 Pfam PF07495 Y_Y_Y domain 412 469 2.3E-8 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3709 ee1b455511d05391a40d30ddfca06fb6 667 Pfam PF07495 Y_Y_Y domain 508 572 8.2E-10 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3709 ee1b455511d05391a40d30ddfca06fb6 667 Pfam PF07495 Y_Y_Y domain 217 284 5.7E-12 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3709 ee1b455511d05391a40d30ddfca06fb6 667 Pfam PF07495 Y_Y_Y domain 27 91 3.6E-10 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3709 ee1b455511d05391a40d30ddfca06fb6 667 Pfam PF07495 Y_Y_Y domain 313 377 2.4E-8 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3709 ee1b455511d05391a40d30ddfca06fb6 667 Pfam PF07495 Y_Y_Y domain 126 185 1.5E-6 T 13-10-2018 IPR011123 Two component regulator three Y CLM_1333 73aa7a85f51541606fdb59f2b1906101 376 SUPERFAMILY SSF53383 3 376 6.31E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1333 73aa7a85f51541606fdb59f2b1906101 376 Gene3D G3DSA:3.90.1150.10 5 374 1.4E-148 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1333 73aa7a85f51541606fdb59f2b1906101 376 Gene3D G3DSA:3.40.640.10 16 257 1.4E-148 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1333 73aa7a85f51541606fdb59f2b1906101 376 Pfam PF00266 Aminotransferase class-V 5 365 2.7E-87 T 13-10-2018 IPR000192 Aminotransferase class V domain CLM_1333 73aa7a85f51541606fdb59f2b1906101 376 PIRSF PIRSF005572 2 376 3.2E-127 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CLM_1333 73aa7a85f51541606fdb59f2b1906101 376 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:3.90.1100.10 18 153 4.5E-51 T 13-10-2018 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:3.90.1100.10 411 600 1.6E-75 T 13-10-2018 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:2.40.270.10 994 1060 8.7E-27 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:3.90.1110.10 154 262 1.9E-7 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 ProSitePatterns PS01166 RNA polymerases beta chain signature. 935 947 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF10385 RNA polymerase beta subunit external 1 domain 567 634 3.1E-22 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF04563 RNA polymerase beta subunit 26 475 6.4E-29 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:3.90.1100.10 625 691 9.6E-20 T 13-10-2018 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:2.40.50.150 804 943 1.1E-63 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:3.90.1800.10 1070 1122 2.6E-10 T 13-10-2018 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF04561 RNA polymerase Rpb2, domain 2 140 294 1.6E-24 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF04561 RNA polymerase Rpb2, domain 2 363 430 8.9E-5 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1160 12.545 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:2.40.50.100 694 764 4.8E-27 T 13-10-2018 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 SUPERFAMILY SSF64484 12 1168 0.0 T 13-10-2018 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF00562 RNA polymerase Rpb2, domain 6 696 1082 9.0E-164 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 214 909 1.1E-302 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF04565 RNA polymerase Rpb2, domain 3 489 557 2.8E-31 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Pfam PF04560 RNA polymerase Rpb2, domain 7 1084 1158 2.7E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3956 41aca682b18dfd5cb62365879105c429 1232 Gene3D G3DSA:2.40.270.10 765 803 1.7E-5 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 SUPERFAMILY SSF54862 8 106 1.82E-20 T 13-10-2018 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 Pfam PF00037 4Fe-4S binding domain 50 71 2.7E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3596 de8d6e9332984b86083d0ee06423e453 301 Pfam PF13353 4Fe-4S single cluster domain 84 172 6.9E-8 T 13-10-2018 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 Pfam PF04055 Radical SAM superfamily 92 240 4.8E-24 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 Gene3D G3DSA:3.20.20.70 3 56 2.6E-17 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 PIRSF PIRSF000371 2 300 4.1E-109 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 SUPERFAMILY SSF102114 93 269 4.32E-25 T 13-10-2018 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 Gene3D G3DSA:3.80.30.10 123 300 3.8E-67 T 13-10-2018 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 84 95 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3596 de8d6e9332984b86083d0ee06423e453 301 Gene3D G3DSA:3.30.70.20 57 98 4.4E-9 T 13-10-2018 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CLM_3596 de8d6e9332984b86083d0ee06423e453 301 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3596 de8d6e9332984b86083d0ee06423e453 301 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 6 293 8.6E-115 T 13-10-2018 CLM_4151 9e84b06cc2db8a6a2bcc51e5594e5e67 69 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 69 3.0E-19 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CLM_4151 9e84b06cc2db8a6a2bcc51e5594e5e67 69 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 24.398 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CLM_4151 9e84b06cc2db8a6a2bcc51e5594e5e67 69 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 68 3.3E-30 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CLM_4151 9e84b06cc2db8a6a2bcc51e5594e5e67 69 Pfam PF01809 Haemolytic domain 2 68 1.3E-31 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CLM_4151 9e84b06cc2db8a6a2bcc51e5594e5e67 69 SMART SM01234 1 68 1.8E-43 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 SUPERFAMILY SSF46785 1 83 1.82E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.8E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 Gene3D G3DSA:1.10.10.10 1 89 2.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 Pfam PF03466 LysR substrate binding domain 90 289 9.6E-33 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 SUPERFAMILY SSF53850 88 293 2.71E-29 T 13-10-2018 CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 Gene3D G3DSA:3.40.190.10 164 265 4.1E-32 T 13-10-2018 CLM_1182 daabc75f4ff1824f14e3f1b0b67cab50 297 Gene3D G3DSA:3.40.190.10 90 287 4.1E-32 T 13-10-2018 CLM_3068 780798efc06e98c33a590caef42f9ff5 287 Gene3D G3DSA:3.40.50.720 1 104 8.0E-8 T 13-10-2018 CLM_3068 780798efc06e98c33a590caef42f9ff5 287 SUPERFAMILY SSF53335 105 236 8.13E-12 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3068 780798efc06e98c33a590caef42f9ff5 287 Gene3D G3DSA:3.40.50.150 105 260 6.0E-7 T 13-10-2018 CLM_0001 d049458c24854fe95170b35251752e6a 445 Gene3D G3DSA:3.30.300.180 2 83 8.9E-22 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily CLM_0001 d049458c24854fe95170b35251752e6a 445 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 9 442 8.4E-185 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CLM_0001 d049458c24854fe95170b35251752e6a 445 SMART SM00760 352 421 9.8E-46 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CLM_0001 d049458c24854fe95170b35251752e6a 445 Pfam PF11638 DnaA N-terminal domain 7 67 1.1E-13 T 13-10-2018 IPR024633 DnaA N-terminal domain CLM_0001 d049458c24854fe95170b35251752e6a 445 Gene3D G3DSA:3.40.50.300 89 272 3.5E-55 T 13-10-2018 CLM_0001 d049458c24854fe95170b35251752e6a 445 Gene3D G3DSA:1.10.8.60 274 342 4.6E-31 T 13-10-2018 CLM_0001 d049458c24854fe95170b35251752e6a 445 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 141 161 6.0E-53 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CLM_0001 d049458c24854fe95170b35251752e6a 445 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 239 266 6.0E-53 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CLM_0001 d049458c24854fe95170b35251752e6a 445 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 402 421 6.0E-53 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CLM_0001 d049458c24854fe95170b35251752e6a 445 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 205 219 6.0E-53 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CLM_0001 d049458c24854fe95170b35251752e6a 445 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 173 187 6.0E-53 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CLM_0001 d049458c24854fe95170b35251752e6a 445 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 6 443 35.012 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CLM_0001 d049458c24854fe95170b35251752e6a 445 SUPERFAMILY SSF48295 339 444 2.88E-39 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CLM_0001 d049458c24854fe95170b35251752e6a 445 SMART SM00382 140 268 7.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0001 d049458c24854fe95170b35251752e6a 445 SUPERFAMILY SSF52540 108 320 6.32E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0001 d049458c24854fe95170b35251752e6a 445 Gene3D G3DSA:1.10.1750.10 343 445 2.7E-39 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CLM_0001 d049458c24854fe95170b35251752e6a 445 ProSitePatterns PS01008 DnaA protein signature. 402 421 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CLM_0001 d049458c24854fe95170b35251752e6a 445 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 353 421 2.6E-33 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CLM_0001 d049458c24854fe95170b35251752e6a 445 Pfam PF00308 Bacterial dnaA protein 108 325 8.1E-104 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 Gene3D G3DSA:3.20.20.140 55 348 2.0E-137 T 13-10-2018 CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 SUPERFAMILY SSF51338 2 379 5.86E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 375 4.0E-114 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 PIRSF PIRSF038994 1 380 1.4E-131 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 Gene3D G3DSA:2.30.40.10 9 376 2.0E-137 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 Pfam PF01979 Amidohydrolase family 51 377 4.9E-31 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_3198 9b4740c49fc9fb2bb48b314546c8c2bd 380 SUPERFAMILY SSF51556 55 348 2.61E-93 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_1716 784de0d8fc4df08bc408157faf095a01 447 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 337 357 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CLM_1716 784de0d8fc4df08bc408157faf095a01 447 Pfam PF00860 Permease family 15 390 5.4E-101 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_1716 784de0d8fc4df08bc408157faf095a01 447 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 417 1.6E-122 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:3.30.980.50 637 746 6.9E-42 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:2.60.120.380 1093 1209 7.2E-29 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 SUPERFAMILY SSF89260 841 951 2.88E-17 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:1.10.1740.190 353 496 2.7E-61 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 Pfam PF01752 Collagenase 284 606 3.5E-85 T 13-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:1.10.390.20 497 636 1.0E-58 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 SMART SM00089 756 835 1.3E-22 T 13-10-2018 IPR022409 PKD/Chitinase domain CLM_1861 df983366119209fa204201898a20996f 1209 Pfam PF00801 PKD domain 765 823 1.3E-15 T 13-10-2018 IPR000601 PKD domain CLM_1861 df983366119209fa204201898a20996f 1209 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 139 157 5.4E-27 T 13-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 CLM_1861 df983366119209fa204201898a20996f 1209 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 443 459 5.4E-27 T 13-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 CLM_1861 df983366119209fa204201898a20996f 1209 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 480 498 5.4E-27 T 13-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 CLM_1861 df983366119209fa204201898a20996f 1209 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 426 440 5.4E-27 T 13-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:2.60.40.10 747 834 2.3E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_1861 df983366119209fa204201898a20996f 1209 Pfam PF08453 Peptidase family M9 N-terminal 73 254 1.2E-50 T 13-10-2018 IPR013661 Peptidase M9, collagenase, N-terminal domain CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:2.60.120.380 971 1091 4.5E-17 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 Gene3D G3DSA:2.60.120.380 839 959 2.5E-17 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 SUPERFAMILY SSF89260 1096 1208 1.7E-33 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 1130 1195 1.7E-5 T 13-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial CLM_1861 df983366119209fa204201898a20996f 1209 SUPERFAMILY SSF89260 973 1086 3.66E-13 T 13-10-2018 CLM_1861 df983366119209fa204201898a20996f 1209 SUPERFAMILY SSF49299 763 833 1.44E-19 T 13-10-2018 IPR035986 PKD domain superfamily CLM_3792 51bcfe2fb6d02df8f10d6fedf613bacb 292 SMART SM00382 26 208 9.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3792 51bcfe2fb6d02df8f10d6fedf613bacb 292 Pfam PF00005 ABC transporter 20 161 6.4E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3792 51bcfe2fb6d02df8f10d6fedf613bacb 292 SUPERFAMILY SSF52540 3 224 2.44E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3792 51bcfe2fb6d02df8f10d6fedf613bacb 292 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3792 51bcfe2fb6d02df8f10d6fedf613bacb 292 Gene3D G3DSA:3.40.50.300 1 239 5.8E-60 T 13-10-2018 CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 SUPERFAMILY SSF48008 91 226 2.48E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 SUPERFAMILY SSF46785 4 78 9.67E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 Gene3D G3DSA:1.20.120.530 89 227 3.0E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.1E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.1E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 SMART SM00895 95 219 1.0E-21 T 13-10-2018 IPR011711 GntR, C-terminal CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 1.2E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 SMART SM00345 15 74 1.8E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 Gene3D G3DSA:1.10.10.10 8 74 1.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2336 8fdcdf74e3d1246ced24d9810b1835ce 229 Pfam PF07729 FCD domain 95 217 5.9E-25 T 13-10-2018 IPR011711 GntR, C-terminal CLM_0455 bc91511a9dc664af8f191fb3b87c91b2 287 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 6 285 2.0E-73 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 CLM_0455 bc91511a9dc664af8f191fb3b87c91b2 287 Gene3D G3DSA:1.10.3720.10 61 287 2.7E-27 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0455 bc91511a9dc664af8f191fb3b87c91b2 287 SUPERFAMILY SSF161098 9 281 7.01E-31 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0455 bc91511a9dc664af8f191fb3b87c91b2 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 285 8.8E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_4120 dcb3756f4a92319711943278f05979ea 61 Pfam PF08984 Domain of unknown function (DUF1858) 3 56 1.2E-24 T 13-10-2018 IPR015077 Domain of unknown function DUF1858 CLM_4120 dcb3756f4a92319711943278f05979ea 61 Gene3D G3DSA:1.10.3910.10 1 61 9.5E-29 T 13-10-2018 IPR038062 ScdA-like, N-terminal domain superfamily CLM_4120 dcb3756f4a92319711943278f05979ea 61 SUPERFAMILY SSF140683 1 61 2.22E-20 T 13-10-2018 IPR038062 ScdA-like, N-terminal domain superfamily CLM_4120 dcb3756f4a92319711943278f05979ea 61 TIGRFAM TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain 3 60 7.8E-30 T 13-10-2018 IPR023883 Conserved hypothetical protein CHP03980, redox-disulphide CLM_3641 482e73e2506afd79579a6281ad6dc248 559 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 91 262 1.1E-19 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 Gene3D G3DSA:3.40.50.300 59 276 9.3E-32 T 13-10-2018 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 171 186 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 TIGRFAM TIGR02902 spore_lonB: ATP-dependent protease LonB 5 532 1.4E-273 T 13-10-2018 IPR014251 Sporulation protease LonB CLM_3641 482e73e2506afd79579a6281ad6dc248 559 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 345 533 2.7E-34 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 SUPERFAMILY SSF54211 348 531 6.45E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3641 482e73e2506afd79579a6281ad6dc248 559 SMART SM00382 87 265 2.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3641 482e73e2506afd79579a6281ad6dc248 559 SUPERFAMILY SSF52540 52 326 3.79E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3641 482e73e2506afd79579a6281ad6dc248 559 Gene3D G3DSA:3.30.230.10 345 551 3.6E-52 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3641 482e73e2506afd79579a6281ad6dc248 559 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 469 488 1.5E-31 T 13-10-2018 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 439 458 1.5E-31 T 13-10-2018 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 492 510 1.5E-31 T 13-10-2018 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 95 114 1.5E-31 T 13-10-2018 CLM_3641 482e73e2506afd79579a6281ad6dc248 559 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 350 366 1.5E-31 T 13-10-2018 CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 Gene3D G3DSA:2.30.40.10 4 456 4.9E-171 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 SUPERFAMILY SSF51556 53 383 4.77E-99 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 Gene3D G3DSA:3.20.20.140 53 424 4.9E-171 T 13-10-2018 CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 455 2.0E-175 T 13-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 SUPERFAMILY SSF51338 352 458 5.18E-39 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 Pfam PF01979 Amidohydrolase family 49 436 8.9E-26 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_3282 21840816a4c8964913ebcd34fc85aa3c 464 SUPERFAMILY SSF51338 1 64 6.48E-18 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3917 02be7ffd5d22513a777d3528c256f616 282 SUPERFAMILY SSF52540 4 236 4.33E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3917 02be7ffd5d22513a777d3528c256f616 282 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3917 02be7ffd5d22513a777d3528c256f616 282 Pfam PF00005 ABC transporter 28 175 2.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3917 02be7ffd5d22513a777d3528c256f616 282 Gene3D G3DSA:3.40.50.300 2 281 3.7E-73 T 13-10-2018 CLM_3917 02be7ffd5d22513a777d3528c256f616 282 SMART SM00382 37 223 1.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3917 02be7ffd5d22513a777d3528c256f616 282 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 5 279 3.1E-122 T 13-10-2018 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Pfam PF07724 AAA domain (Cdc48 subfamily) 538 713 3.8E-59 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Gene3D G3DSA:3.40.50.300 491 718 1.1E-90 T 13-10-2018 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 297 309 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 SMART SM00382 202 346 4.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3980 1d10e468632b0b73e445256863df1c0c 811 SMART SM00382 539 685 1.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Gene3D G3DSA:3.40.50.300 152 345 2.9E-74 T 13-10-2018 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Gene3D G3DSA:1.10.8.60 348 483 3.0E-48 T 13-10-2018 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 SUPERFAMILY SSF52540 488 808 3.24E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Gene3D G3DSA:1.10.8.60 719 810 3.4E-29 T 13-10-2018 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Pfam PF02151 UvrB/uvrC motif 419 453 7.3E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Gene3D G3DSA:4.10.860.10 411 469 3.0E-48 T 13-10-2018 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 207 319 3.1E-15 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 SMART SM01086 719 808 1.5E-35 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CLM_3980 1d10e468632b0b73e445256863df1c0c 811 SUPERFAMILY SSF52540 162 473 3.11E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3980 1d10e468632b0b73e445256863df1c0c 811 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 573 591 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 664 4.2E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 543 561 4.2E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 588 606 4.2E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 617 635 4.2E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 719 799 1.3E-27 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CLM_3980 1d10e468632b0b73e445256863df1c0c 811 SUPERFAMILY SSF81923 5 148 4.91E-28 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 66 7.8E-15 T 13-10-2018 IPR004176 Clp, N-terminal CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 141 5.8E-15 T 13-10-2018 IPR004176 Clp, N-terminal CLM_3980 1d10e468632b0b73e445256863df1c0c 811 Gene3D G3DSA:1.10.1780.10 1 150 7.7E-48 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Gene3D G3DSA:3.30.470.20 189 326 1.8E-48 T 13-10-2018 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 SUPERFAMILY SSF56059 102 318 3.36E-52 T 13-10-2018 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 SMART SM01209 101 293 7.6E-116 T 13-10-2018 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 2.7E-72 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 412 9.3E-155 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 329 413 2.1E-25 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 SUPERFAMILY SSF52440 1 101 5.47E-34 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 3.1E-33 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 413 39.686 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Gene3D G3DSA:3.40.50.20 1 93 9.0E-34 T 13-10-2018 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 SMART SM01210 327 412 4.8E-34 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Gene3D G3DSA:3.90.600.10 328 413 3.9E-28 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 Gene3D G3DSA:3.30.1490.20 119 188 2.7E-24 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CLM_3269 e5b8b78711d95916d9c17f982749c8c3 413 SUPERFAMILY SSF51246 327 412 3.37E-25 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CLM_0996 e13f7d1f41d899ceb39cf97796a87a92 205 SUPERFAMILY SSF55729 1 187 5.23E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0996 e13f7d1f41d899ceb39cf97796a87a92 205 Pfam PF00583 Acetyltransferase (GNAT) family 45 175 1.1E-13 T 13-10-2018 IPR000182 GNAT domain CLM_0996 e13f7d1f41d899ceb39cf97796a87a92 205 Gene3D G3DSA:3.40.630.30 2 188 1.6E-26 T 13-10-2018 CLM_0552 78c3d4b1fa6237e195254d925c7f0332 79 Gene3D G3DSA:1.10.260.40 6 79 1.2E-11 T 13-10-2018 CLM_0552 78c3d4b1fa6237e195254d925c7f0332 79 SMART SM00530 6 62 1.5E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0552 78c3d4b1fa6237e195254d925c7f0332 79 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 8.9E-23 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0552 78c3d4b1fa6237e195254d925c7f0332 79 SUPERFAMILY SSF47413 2 70 7.32E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2387 9e6675f764af3895c622da2dce140836 450 Pfam PF01979 Amidohydrolase family 57 412 1.2E-66 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_2387 9e6675f764af3895c622da2dce140836 450 SUPERFAMILY SSF51556 60 365 1.64E-88 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_2387 9e6675f764af3895c622da2dce140836 450 Gene3D G3DSA:2.30.40.10 11 431 5.9E-151 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_2387 9e6675f764af3895c622da2dce140836 450 Gene3D G3DSA:3.20.20.140 61 357 5.9E-151 T 13-10-2018 CLM_2387 9e6675f764af3895c622da2dce140836 450 SUPERFAMILY SSF51338 4 439 7.78E-35 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 Pfam PF01820 D-ala D-ala ligase N-terminus 2 84 1.2E-21 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 Gene3D G3DSA:3.40.50.20 1 82 2.6E-30 T 13-10-2018 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 PIRSF PIRSF039102 1 51 1.8E-10 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 PIRSF PIRSF039102 42 300 2.0E-91 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 61 72 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 239 266 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 1 296 35.126 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 SUPERFAMILY SSF56059 94 292 4.38E-48 T 13-10-2018 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 SUPERFAMILY SSF52440 1 94 1.73E-29 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 Gene3D G3DSA:3.30.1490.20 109 175 1.1E-69 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 Pfam PF07478 D-ala D-ala ligase C-terminus 102 292 2.0E-48 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 Gene3D G3DSA:3.30.470.20 83 292 1.1E-69 T 13-10-2018 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 SMART SM01209 93 263 0.0034 T 13-10-2018 CLM_0535 c729b1d6db81aa458fc296386f52dcf9 300 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 2 294 1.0E-91 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 Pfam PF01799 [2Fe-2S] binding domain 80 149 5.4E-25 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 62 1.4E-5 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 Gene3D G3DSA:1.10.150.120 83 161 9.0E-26 T 13-10-2018 CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 SUPERFAMILY SSF47741 80 155 1.57E-27 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 Gene3D G3DSA:3.10.20.30 5 82 1.4E-27 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 46 54 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CLM_3221 d7ff222909d9fe9710464c7fd829b89a 162 SUPERFAMILY SSF54292 10 94 3.41E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CLM_0102 64805280bbcafe3b1a4e9bf8a88070b1 56 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 38 49 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0102 64805280bbcafe3b1a4e9bf8a88070b1 56 Gene3D G3DSA:3.30.70.20 2 56 4.5E-24 T 13-10-2018 CLM_0102 64805280bbcafe3b1a4e9bf8a88070b1 56 PRINTS PR00354 7Fe ferredoxin signature 17 27 4.7E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 CLM_0102 64805280bbcafe3b1a4e9bf8a88070b1 56 PRINTS PR00354 7Fe ferredoxin signature 33 50 4.7E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 CLM_0102 64805280bbcafe3b1a4e9bf8a88070b1 56 Pfam PF12838 4Fe-4S dicluster domain 8 52 2.0E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0102 64805280bbcafe3b1a4e9bf8a88070b1 56 SUPERFAMILY SSF54862 3 54 2.33E-18 T 13-10-2018 CLM_4036 f90458be389469844d55de21c6f11324 319 Pfam PF14572 Phosphoribosyl synthetase-associated domain 209 317 4.5E-22 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CLM_4036 f90458be389469844d55de21c6f11324 319 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CLM_4036 f90458be389469844d55de21c6f11324 319 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 124 2.3E-51 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CLM_4036 f90458be389469844d55de21c6f11324 319 Gene3D G3DSA:3.40.50.2020 11 306 3.4E-127 T 13-10-2018 CLM_4036 f90458be389469844d55de21c6f11324 319 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 8 318 51.094 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CLM_4036 f90458be389469844d55de21c6f11324 319 Gene3D G3DSA:3.40.50.2020 151 294 3.4E-127 T 13-10-2018 CLM_4036 f90458be389469844d55de21c6f11324 319 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 8 318 4.4E-127 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CLM_4036 f90458be389469844d55de21c6f11324 319 SUPERFAMILY SSF53271 73 309 1.78E-67 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_4036 f90458be389469844d55de21c6f11324 319 SMART SM01400 8 124 1.3E-80 T 13-10-2018 CLM_0435 3cb07771e22ae7470812b231daf08207 471 Pfam PF00474 Sodium:solute symporter family 32 426 4.9E-39 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CLM_0435 3cb07771e22ae7470812b231daf08207 471 Gene3D G3DSA:1.20.1730.10 20 471 6.2E-80 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 474 188.212 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 SUPERFAMILY SSF52540 146 424 1.75E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Pfam PF07498 Rho termination factor, N-terminal domain 5 39 4.8E-11 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 SUPERFAMILY SSF50249 101 170 2.51E-6 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Pfam PF07497 Rho termination factor, RNA-binding domain 109 181 1.0E-31 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 SMART SM00382 223 408 4.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 SMART SM00959 5 47 1.9E-11 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 SUPERFAMILY SSF68912 5 39 2.82E-6 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Gene3D G3DSA:1.10.720.10 4 40 1.9E-5 T 13-10-2018 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 472 1.8E-176 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Gene3D G3DSA:3.40.50.300 187 472 8.9E-119 T 13-10-2018 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Gene3D G3DSA:2.40.50.140 60 184 1.1E-36 T 13-10-2018 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 SMART SM00357 109 174 3.4E-14 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CLM_0177 fd3c4e8e4787ede3e0177beb306c7f05 481 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 213 416 1.2E-18 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3054 b44680ccec3d096aad4b3cd81cac5c4f 320 Gene3D G3DSA:1.10.260.150 56 320 7.9E-77 T 13-10-2018 CLM_3054 b44680ccec3d096aad4b3cd81cac5c4f 320 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 77 234 4.0E-44 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CLM_3054 b44680ccec3d096aad4b3cd81cac5c4f 320 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 77 234 2.6E-33 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 SMART SM00387 342 448 8.6E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 Gene3D G3DSA:3.30.565.10 291 444 6.5E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 SMART SM00388 229 296 1.1E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 293 8.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 435 6.3E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 SUPERFAMILY SSF55874 300 435 5.11E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 SUPERFAMILY SSF47384 212 294 3.92E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 Gene3D G3DSA:1.10.287.130 178 290 3.0E-21 T 13-10-2018 CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 212 226 9.6E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 9.6E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3796 97a9445e3f7dc48faa2af1c82cf05ea5 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 9.6E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3338 e587d854a5a2762e243cabf7331a679d 206 SUPERFAMILY SSF46934 1 44 1.33E-10 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 CLM_3338 e587d854a5a2762e243cabf7331a679d 206 Pfam PF14242 Domain of unknown function (DUF4342) 45 124 9.2E-28 T 13-10-2018 IPR025642 Domain of unknown function DUF4342 CLM_3338 e587d854a5a2762e243cabf7331a679d 206 Gene3D G3DSA:1.10.8.10 1 52 1.8E-6 T 13-10-2018 CLM_0806 3f63869d30c1f5b334df84dc57da0810 261 SUPERFAMILY SSF52540 4 230 5.33E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0806 3f63869d30c1f5b334df84dc57da0810 261 Gene3D G3DSA:3.40.50.300 1 252 5.8E-66 T 13-10-2018 CLM_0806 3f63869d30c1f5b334df84dc57da0810 261 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0806 3f63869d30c1f5b334df84dc57da0810 261 Pfam PF00005 ABC transporter 20 167 2.1E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0806 3f63869d30c1f5b334df84dc57da0810 261 SMART SM00382 28 217 5.7E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1608 5333c180df03ade3ada2550d50bffed3 581 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 420 573 1.7E-50 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 SUPERFAMILY SSF55486 251 573 1.12E-78 T 13-10-2018 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 Gene3D G3DSA:1.10.390.10 422 573 2.1E-46 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1608 5333c180df03ade3ada2550d50bffed3 581 Pfam PF03413 Peptidase propeptide and YPEB domain 148 212 6.8E-8 T 13-10-2018 IPR025711 PepSY domain CLM_1608 5333c180df03ade3ada2550d50bffed3 581 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 429 440 6.0E-20 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 370 390 6.0E-20 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 408 424 6.0E-20 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 491 507 6.0E-20 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 Gene3D G3DSA:3.10.170.10 255 421 6.1E-42 T 13-10-2018 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 256 417 1.0E-45 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 CLM_1608 5333c180df03ade3ada2550d50bffed3 581 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 85 133 1.7E-7 T 13-10-2018 IPR011096 FTP domain CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 1.6E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 1.6E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 1.6E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 1.6E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 SUPERFAMILY SSF55874 281 423 3.67E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 SMART SM00387 307 426 1.5E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 424 1.7E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0722 19a413ea9159ae8f5f489a7ebe8ad4a8 432 Gene3D G3DSA:3.30.565.10 269 428 1.0E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0997 d55a097f6e6caea5360b4b06d634b398 171 Pfam PF04229 GrpB protein 2 162 1.9E-53 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase CLM_0997 d55a097f6e6caea5360b4b06d634b398 171 SUPERFAMILY SSF81301 5 168 2.94E-56 T 13-10-2018 CLM_0997 d55a097f6e6caea5360b4b06d634b398 171 Gene3D G3DSA:3.30.460.10 1 169 2.3E-62 T 13-10-2018 CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 3.4E-26 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 9.0E-29 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 Gene3D G3DSA:3.30.1340.10 1 85 6.2E-30 T 13-10-2018 IPR035895 HPr-like superfamily CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 SUPERFAMILY SSF55594 1 82 1.44E-24 T 13-10-2018 IPR035895 HPr-like superfamily CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 9.4E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 9.4E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CLM_2690 b5c59692397b5b63a9a907a8bfeb5552 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 9.4E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CLM_3071 5b40c987afc24b55c777090c17bfcb49 392 Gene3D G3DSA:3.40.50.2000 1 209 5.9E-10 T 13-10-2018 CLM_3071 5b40c987afc24b55c777090c17bfcb49 392 SUPERFAMILY SSF53756 17 391 1.05E-45 T 13-10-2018 CLM_3071 5b40c987afc24b55c777090c17bfcb49 392 Pfam PF00534 Glycosyl transferases group 1 204 369 2.4E-19 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_3071 5b40c987afc24b55c777090c17bfcb49 392 Gene3D G3DSA:3.40.50.2000 210 380 6.1E-26 T 13-10-2018 CLM_3357 f8c88295f108114a567c4eef4d9a3e61 380 SMART SM00729 9 225 1.8E-58 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_3357 f8c88295f108114a567c4eef4d9a3e61 380 Gene3D G3DSA:3.80.30.20 1 302 4.8E-107 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3357 f8c88295f108114a567c4eef4d9a3e61 380 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 363 3.5E-105 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 CLM_3357 f8c88295f108114a567c4eef4d9a3e61 380 SUPERFAMILY SSF102114 7 379 5.1E-113 T 13-10-2018 CLM_3357 f8c88295f108114a567c4eef4d9a3e61 380 Pfam PF06969 HemN C-terminal domain 305 367 1.7E-12 T 13-10-2018 IPR010723 HemN, C-terminal CLM_3357 f8c88295f108114a567c4eef4d9a3e61 380 Pfam PF04055 Radical SAM superfamily 14 178 1.9E-24 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 417 434 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 Gene3D G3DSA:3.30.1360.60 400 480 9.7E-22 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 369 464 2.6E-16 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 Pfam PF00367 phosphotransferase system, EIIB 406 439 4.1E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 Pfam PF02378 Phosphotransferase system, EIIC 15 312 3.4E-75 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 10 475 6.9E-172 T 13-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 CLM_3202 0ad208895b32f1d533df63e5ba4feee0 480 SUPERFAMILY SSF55604 404 475 7.59E-17 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0325 0bd44c405372bc2aa98fb9b97d187b2d 427 Pfam PF01565 FAD binding domain 27 161 2.2E-27 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CLM_0325 0bd44c405372bc2aa98fb9b97d187b2d 427 SUPERFAMILY SSF56176 12 191 3.88E-47 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_0325 0bd44c405372bc2aa98fb9b97d187b2d 427 Gene3D G3DSA:3.30.465.40 12 426 1.4E-95 T 13-10-2018 CLM_0325 0bd44c405372bc2aa98fb9b97d187b2d 427 Gene3D G3DSA:3.40.462.20 197 409 1.4E-95 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SUPERFAMILY SSF56059 128 399 1.33E-105 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 705 719 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 833 840 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SUPERFAMILY SSF48108 395 548 5.49E-44 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Gene3D G3DSA:3.40.50.20 550 660 5.7E-46 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Gene3D G3DSA:3.40.50.20 1 116 8.5E-49 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Gene3D G3DSA:1.10.1030.10 403 549 1.2E-41 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Gene3D G3DSA:3.40.50.1380 935 1066 2.3E-38 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 4 1049 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SUPERFAMILY SSF56059 669 930 3.54E-93 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SUPERFAMILY SSF52335 939 1051 5.36E-31 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SUPERFAMILY SSF52440 1 126 1.58E-48 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 424 543 1.2E-36 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SMART SM01096 420 543 1.4E-60 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1061 12.905 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Gene3D G3DSA:3.30.470.20 661 932 6.2E-99 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 4.7E-81 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 669 870 2.9E-34 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Gene3D G3DSA:3.30.470.20 119 401 4.3E-123 T 13-10-2018 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SMART SM00851 953 1040 7.8E-29 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1066 13.254 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 Pfam PF02142 MGS-like domain 954 1040 7.0E-20 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CLM_2001 4a1457cf5ba240e6630723537ffe91cf 1068 SUPERFAMILY SSF52440 553 671 1.05E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 Gene3D G3DSA:3.40.50.2300 77 324 9.5E-66 T 13-10-2018 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 Gene3D G3DSA:1.10.260.40 1 60 7.9E-25 T 13-10-2018 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 SUPERFAMILY SSF53822 63 332 1.65E-54 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 2.0E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 Pfam PF13377 Periplasmic binding protein-like domain 174 331 1.5E-25 T 13-10-2018 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 SUPERFAMILY SSF47413 2 60 2.08E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 Gene3D G3DSA:3.40.50.2300 165 330 9.5E-66 T 13-10-2018 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 CLM_1844 587d4a21a6277bdd6fdcbd5cd0f89cc8 333 SMART SM00354 2 72 9.9E-30 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 Pfam PF00696 Amino acid kinase family 3 228 1.2E-47 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 Gene3D G3DSA:3.30.70.260 256 400 1.7E-37 T 13-10-2018 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 SUPERFAMILY SSF53633 4 241 9.56E-66 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_3781 152d426b8afc8f19d8f9d533df845214 400 SUPERFAMILY SSF55021 329 399 8.5E-16 T 13-10-2018 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 PIRSF PIRSF000726 59 400 3.1E-106 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 PIRSF PIRSF000726 1 62 5.9E-21 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 60 398 4.0E-101 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 Gene3D G3DSA:3.30.70.260 261 335 1.7E-37 T 13-10-2018 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 Pfam PF13840 ACT domain 333 392 3.5E-7 T 13-10-2018 IPR027795 CASTOR, ACT domain CLM_3781 152d426b8afc8f19d8f9d533df845214 400 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 SUPERFAMILY SSF55021 252 326 1.51E-13 T 13-10-2018 CLM_3781 152d426b8afc8f19d8f9d533df845214 400 Gene3D G3DSA:3.40.1160.10 1 255 4.6E-83 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 27 469 2.1E-167 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 PIRSF PIRSF000485 23 482 1.6E-180 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 26 468 47.923 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 Pfam PF00156 Phosphoribosyl transferase domain 293 401 1.9E-11 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 Gene3D G3DSA:3.40.50.2020 288 452 9.4E-167 T 13-10-2018 CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 Pfam PF13537 Glutamine amidotransferase domain 107 226 1.2E-20 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 SUPERFAMILY SSF56235 27 254 5.06E-69 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 Gene3D G3DSA:3.60.20.10 27 470 9.4E-167 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3273 50264cffffeb3e94fac06b8300e02d58 482 SUPERFAMILY SSF53271 264 473 4.98E-73 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3131 1bffea56a40998fb1bd389821ce89cca 272 SUPERFAMILY SSF51658 4 271 8.7E-59 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CLM_3131 1bffea56a40998fb1bd389821ce89cca 272 SMART SM00518 1 269 3.9E-55 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CLM_3131 1bffea56a40998fb1bd389821ce89cca 272 Pfam PF01261 Xylose isomerase-like TIM barrel 28 232 5.7E-21 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CLM_3131 1bffea56a40998fb1bd389821ce89cca 272 Gene3D G3DSA:3.20.20.150 17 271 8.3E-37 T 13-10-2018 CLM_2603 d72eca16bc2156877f11ceba027f811c 198 Pfam PF12978 Domain of Unknown Function with PDB structure (DUF3862) 60 197 2.4E-15 T 13-10-2018 IPR024418 Protein of unknown function DUF3862 CLM_2603 d72eca16bc2156877f11ceba027f811c 198 SUPERFAMILY SSF55648 56 197 1.83E-5 T 13-10-2018 IPR024221 Beta-lactamase-inhibitor protein BLIP domain superfamily CLM_2603 d72eca16bc2156877f11ceba027f811c 198 Gene3D G3DSA:3.30.1450.10 126 198 1.8E-6 T 13-10-2018 IPR037873 BamE-like CLM_2603 d72eca16bc2156877f11ceba027f811c 198 Gene3D G3DSA:3.30.1450.10 53 124 7.1E-7 T 13-10-2018 IPR037873 BamE-like CLM_2413 304ccfdffeda948c5586218b421bfc16 297 Pfam PF02517 CAAX protease self-immunity 138 229 4.6E-16 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 17 294 2.3E-77 T 13-10-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 PIRSF PIRSF001327 2 580 1.2E-271 T 13-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 SUPERFAMILY SSF52540 312 544 1.36E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 SUPERFAMILY SSF52540 14 292 3.4E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 Gene3D G3DSA:3.40.50.300 309 576 1.8E-64 T 13-10-2018 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 12 568 1.2E-259 T 13-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 Pfam PF02374 Anion-transporting ATPase 475 573 1.8E-6 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 Pfam PF02374 Anion-transporting ATPase 327 468 7.4E-32 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 Pfam PF02374 Anion-transporting ATPase 13 294 1.6E-78 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 Gene3D G3DSA:3.40.50.300 11 297 4.2E-79 T 13-10-2018 CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 SMART SM00382 325 519 0.33 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0907 bea2016c5456ee50bad208d012fdfdf0 581 SMART SM00382 12 234 3.9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 328 9.3E-141 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 105 4.7E-36 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 3.5E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 3.5E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 3.5E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 3.5E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 3.5E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 Gene3D G3DSA:3.30.360.10 154 318 8.2E-155 T 13-10-2018 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 SUPERFAMILY SSF55347 155 317 1.37E-73 T 13-10-2018 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 SMART SM00846 3 155 9.3E-92 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 1.7E-70 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 Gene3D G3DSA:3.40.50.720 4 332 8.2E-155 T 13-10-2018 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 PIRSF PIRSF000149 1 338 4.2E-139 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_1253 53f9db9a28f598d750d50645fc2c0d15 338 SUPERFAMILY SSF51735 3 171 3.82E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2447 e8d37c992f8e70efe1448994427e733d 154 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 95 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_2447 e8d37c992f8e70efe1448994427e733d 154 SMART SM00347 22 122 3.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2447 e8d37c992f8e70efe1448994427e733d 154 Pfam PF01047 MarR family 31 86 6.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2447 e8d37c992f8e70efe1448994427e733d 154 Gene3D G3DSA:1.10.10.10 4 146 2.0E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2447 e8d37c992f8e70efe1448994427e733d 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 4.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2447 e8d37c992f8e70efe1448994427e733d 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 4.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2447 e8d37c992f8e70efe1448994427e733d 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 4.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2447 e8d37c992f8e70efe1448994427e733d 154 SUPERFAMILY SSF46785 7 141 2.69E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0399 4f9548a58c71e60ce8198e176899ebc6 229 Pfam PF04647 Accessory gene regulator B 8 197 2.3E-41 T 13-10-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CLM_0399 4f9548a58c71e60ce8198e176899ebc6 229 SMART SM00793 6 206 2.5E-22 T 13-10-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 8.3E-30 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 197 208 8.3E-30 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 8.3E-30 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 8.3E-30 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 224 237 8.3E-30 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Gene3D G3DSA:2.40.30.130 460 551 1.2E-8 T 13-10-2018 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 SUPERFAMILY SSF55681 4 243 4.97E-94 T 13-10-2018 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 SUPERFAMILY SSF101353 244 462 5.23E-66 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 857 4.1E-301 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 655 698 9.8E-20 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 SMART SM00863 655 698 6.4E-23 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Pfam PF01411 tRNA synthetases class II (A) 8 558 1.2E-201 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Gene3D G3DSA:3.30.980.10 558 697 6.0E-52 T 13-10-2018 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Pfam PF02272 DHHA1 domain 740 873 1.0E-25 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 SUPERFAMILY SSF55186 554 718 1.96E-51 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 SUPERFAMILY SSF50447 455 554 9.89E-17 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 173.191 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Gene3D G3DSA:3.10.310.40 766 876 8.6E-34 T 13-10-2018 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Gene3D G3DSA:3.30.930.10 3 239 4.9E-99 T 13-10-2018 CLM_2871 f535534ca840a7b5ae879cbd9761ac66 879 Gene3D G3DSA:3.30.54.20 626 679 6.0E-52 T 13-10-2018 CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 Gene3D G3DSA:3.30.1330.30 1 100 2.1E-23 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 Gene3D G3DSA:3.40.1280.10 108 259 1.6E-49 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 SMART SM00967 29 104 2.4E-10 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 Pfam PF00588 SpoU rRNA Methylase family 112 250 5.8E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 SUPERFAMILY SSF75217 107 257 1.44E-38 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 29 98 2.7E-10 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CLM_3539 9ec3d5dbfb19d565b0bcbc1c93e886f8 259 SUPERFAMILY SSF55315 1 100 9.53E-21 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_1947 f9cd9688a969c7b427a279f8f783b396 66 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 45 59 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 CLM_1947 f9cd9688a969c7b427a279f8f783b396 66 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 7 66 8.5E-26 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 CLM_1947 f9cd9688a969c7b427a279f8f783b396 66 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 22 31 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 CLM_1947 f9cd9688a969c7b427a279f8f783b396 66 Gene3D G3DSA:1.10.8.910 7 66 4.7E-23 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily CLM_0349 5b3d572d2686002818395f5991cc8fcd 571 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 469 480 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CLM_0349 5b3d572d2686002818395f5991cc8fcd 571 Gene3D G3DSA:3.50.30.80 381 530 5.4E-48 T 13-10-2018 CLM_0349 5b3d572d2686002818395f5991cc8fcd 571 SUPERFAMILY SSF52016 382 570 3.53E-49 T 13-10-2018 CLM_0349 5b3d572d2686002818395f5991cc8fcd 571 SUPERFAMILY SSF143975 10 380 4.97E-121 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CLM_0349 5b3d572d2686002818395f5991cc8fcd 571 Pfam PF00920 Dehydratase family 29 567 5.1E-184 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CLM_4093 208fd636c45e333c1f335cf9b350deee 314 SUPERFAMILY SSF52151 4 309 1.78E-74 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_4093 208fd636c45e333c1f335cf9b350deee 314 SUPERFAMILY SSF55048 129 196 9.42E-17 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CLM_4093 208fd636c45e333c1f335cf9b350deee 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 289 1.1E-98 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CLM_4093 208fd636c45e333c1f335cf9b350deee 314 Pfam PF00698 Acyl transferase domain 6 286 4.6E-34 T 13-10-2018 IPR014043 Acyl transferase CLM_4093 208fd636c45e333c1f335cf9b350deee 314 Gene3D G3DSA:3.30.70.250 126 196 3.6E-94 T 13-10-2018 CLM_4093 208fd636c45e333c1f335cf9b350deee 314 PIRSF PIRSF000446 1 310 1.3E-101 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CLM_4093 208fd636c45e333c1f335cf9b350deee 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 306 6.1E-34 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain CLM_4093 208fd636c45e333c1f335cf9b350deee 314 Gene3D G3DSA:3.40.366.10 5 285 3.6E-94 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 CLM_2798 2c26a735127e47b9437b5f47bdad90d9 63 Pfam PF00830 Ribosomal L28 family 3 58 4.0E-22 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2798 2c26a735127e47b9437b5f47bdad90d9 63 Gene3D G3DSA:2.30.170.40 19 63 3.6E-20 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2798 2c26a735127e47b9437b5f47bdad90d9 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 2 56 5.1E-23 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2798 2c26a735127e47b9437b5f47bdad90d9 63 SUPERFAMILY SSF143800 2 61 1.24E-23 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2798 2c26a735127e47b9437b5f47bdad90d9 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 17.774 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2079 9f36f6d85f9c02c0ac62beba7ae868f3 218 SUPERFAMILY SSF47413 11 60 2.02E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2079 9f36f6d85f9c02c0ac62beba7ae868f3 218 Gene3D G3DSA:1.10.260.40 6 82 8.9E-11 T 13-10-2018 CLM_2079 9f36f6d85f9c02c0ac62beba7ae868f3 218 Pfam PF12844 Helix-turn-helix domain 10 58 2.2E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2079 9f36f6d85f9c02c0ac62beba7ae868f3 218 SMART SM00530 3 58 1.1E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0289 a1ee1773e58347add4110b90f1062365 231 Gene3D G3DSA:2.60.120.10 15 155 6.0E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0289 a1ee1773e58347add4110b90f1062365 231 Pfam PF00027 Cyclic nucleotide-binding domain 33 120 7.3E-7 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_0289 a1ee1773e58347add4110b90f1062365 231 Gene3D G3DSA:1.10.10.10 156 226 7.4E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0289 a1ee1773e58347add4110b90f1062365 231 SUPERFAMILY SSF46785 153 223 2.57E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0289 a1ee1773e58347add4110b90f1062365 231 Pfam PF13545 Crp-like helix-turn-helix domain 154 219 1.1E-9 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_0289 a1ee1773e58347add4110b90f1062365 231 SUPERFAMILY SSF51206 20 135 3.27E-12 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CLM_3472 968d070abe783d219baf24187490c479 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 6 26 5.2E-8 T 13-10-2018 IPR003849 Preprotein translocase YajC CLM_3472 968d070abe783d219baf24187490c479 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 44 62 5.2E-8 T 13-10-2018 IPR003849 Preprotein translocase YajC CLM_3472 968d070abe783d219baf24187490c479 111 SMART SM01323 4 87 1.2E-27 T 13-10-2018 IPR003849 Preprotein translocase YajC CLM_3472 968d070abe783d219baf24187490c479 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 10 87 3.2E-18 T 13-10-2018 IPR003849 Preprotein translocase YajC CLM_3472 968d070abe783d219baf24187490c479 111 Pfam PF02699 Preprotein translocase subunit 10 83 1.9E-23 T 13-10-2018 IPR003849 Preprotein translocase YajC CLM_0461 2b244aee1621af6d70740efc4aacb852 274 TIGRFAM TIGR04398 SLAP_DUP: SLAP domain 149 272 1.2E-38 T 13-10-2018 IPR030910 SLAP domain, Bacillus-type CLM_0461 2b244aee1621af6d70740efc4aacb852 274 TIGRFAM TIGR04398 SLAP_DUP: SLAP domain 17 139 7.1E-38 T 13-10-2018 IPR030910 SLAP domain, Bacillus-type CLM_0158 2d742f053721fb7c8ab0e0af0b069b99 300 PIRSF PIRSF011575 1 300 1.1E-133 T 13-10-2018 IPR008764 Peptidase U57, YabG CLM_0158 2d742f053721fb7c8ab0e0af0b069b99 300 ProDom PD127708 YABG PROTEASE SPORULATION-SPECIFIC PEPTIDASE U57 BH0058 ORTHOLOG SPORE FAMILY B.SUBTILIS 1 288 1.0E-89 T 13-10-2018 IPR008764 Peptidase U57, YabG CLM_0158 2d742f053721fb7c8ab0e0af0b069b99 300 TIGRFAM TIGR02855 spore_yabG: sporulation peptidase YabG 3 296 2.3E-127 T 13-10-2018 IPR008764 Peptidase U57, YabG CLM_0158 2d742f053721fb7c8ab0e0af0b069b99 300 Pfam PF05582 YabG peptidase U57 3 295 1.6E-122 T 13-10-2018 IPR008764 Peptidase U57, YabG CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 Pfam PF00486 Transcriptional regulatory protein, C terminal 175 250 3.0E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 Pfam PF00072 Response regulator receiver domain 30 138 4.4E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 SUPERFAMILY SSF46894 151 251 1.67E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 Gene3D G3DSA:1.10.10.10 151 257 3.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 Gene3D G3DSA:3.40.50.2300 27 150 1.9E-28 T 13-10-2018 CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 SMART SM00862 175 250 1.4E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 SMART SM00448 28 138 1.6E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0331 ab1f4a44400858b4d9fdc116862c66a9 258 SUPERFAMILY SSF52172 29 144 5.27E-32 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 SMART SM00450 58 179 8.8E-19 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 SMART SM00450 201 320 4.1E-21 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 Pfam PF00581 Rhodanese-like domain 61 175 1.4E-20 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 Pfam PF00581 Rhodanese-like domain 205 316 2.8E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 ProSitePatterns PS00380 Rhodanese signature 1. 83 94 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 Gene3D G3DSA:3.40.250.10 41 197 4.2E-37 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 SUPERFAMILY SSF52821 198 323 5.11E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 Gene3D G3DSA:3.40.250.10 198 324 2.2E-32 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_2978 1a8fb39dd1078b4afcb3709ccdfe395b 324 SUPERFAMILY SSF52821 52 194 1.23E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 5 266 4.3E-86 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 PIRSF PIRSF000193 2 268 3.2E-84 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 99 1.1E-18 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 Gene3D G3DSA:3.40.50.720 1 163 5.6E-49 T 13-10-2018 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 Gene3D G3DSA:1.10.3730.10 164 268 4.1E-41 T 13-10-2018 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 3 266 27.542 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 SUPERFAMILY SSF51735 5 160 1.05E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 SUPERFAMILY SSF48179 161 268 1.68E-39 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CLM_3594 74b26817aab5aa99e194425d1cacc6ad 268 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 266 6.3E-41 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CLM_3571 95dcfb07cc2b3801e277274ad86e305e 250 TIGRFAM TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB 46 234 4.0E-75 T 13-10-2018 IPR014132 Sporulation polysaccharide deacetylase, PdaB CLM_3571 95dcfb07cc2b3801e277274ad86e305e 250 Pfam PF01522 Polysaccharide deacetylase 47 167 2.1E-35 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_3571 95dcfb07cc2b3801e277274ad86e305e 250 SUPERFAMILY SSF88713 13 234 7.34E-64 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_3571 95dcfb07cc2b3801e277274ad86e305e 250 Gene3D G3DSA:3.20.20.370 23 243 1.2E-69 T 13-10-2018 CLM_3029 5bc246c3362bc65100208ef06b91acba 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 14 103 2.6E-23 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CLM_3029 5bc246c3362bc65100208ef06b91acba 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 22 104 6.6E-28 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CLM_3029 5bc246c3362bc65100208ef06b91acba 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 5 104 17.94 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CLM_3029 5bc246c3362bc65100208ef06b91acba 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 4.6E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CLM_3029 5bc246c3362bc65100208ef06b91acba 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 34 50 4.6E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CLM_3029 5bc246c3362bc65100208ef06b91acba 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 4.6E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 Gene3D G3DSA:3.40.50.150 65 273 1.7E-83 T 13-10-2018 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 SUPERFAMILY SSF55174 5 71 7.95E-12 T 13-10-2018 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 Pfam PF01479 S4 domain 6 50 2.0E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 Gene3D G3DSA:3.10.290.10 1 64 3.9E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 Pfam PF01728 FtsJ-like methyltransferase 62 241 2.1E-18 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 PIRSF PIRSF005578 1 265 5.1E-103 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 7 238 1.3E-86 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 CLM_2097 ae293c52fc2d8871238d685c357f6459 273 SUPERFAMILY SSF53335 55 249 8.31E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2097 ae293c52fc2d8871238d685c357f6459 273 SMART SM00363 6 69 7.6E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_2089 0367fb5b7a9c7ad1df6e4d8443d08b58 408 Pfam PF05580 SpoIVB peptidase S55 190 399 1.4E-88 T 13-10-2018 IPR008763 Peptidase S55, SpoIVB CLM_2089 0367fb5b7a9c7ad1df6e4d8443d08b58 408 Gene3D G3DSA:2.30.42.10 124 200 1.2E-16 T 13-10-2018 CLM_2089 0367fb5b7a9c7ad1df6e4d8443d08b58 408 TIGRFAM TIGR02860 spore_IV_B: stage IV sporulation protein B 4 404 1.8E-158 T 13-10-2018 IPR014219 Peptidase S55, sporulation stage IV, protein B CLM_2089 0367fb5b7a9c7ad1df6e4d8443d08b58 408 SUPERFAMILY SSF50156 127 207 9.2E-12 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CLM_2089 0367fb5b7a9c7ad1df6e4d8443d08b58 408 Pfam PF13180 PDZ domain 125 181 1.8E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_2089 0367fb5b7a9c7ad1df6e4d8443d08b58 408 SMART SM00228 99 174 0.0017 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 SUPERFAMILY SSF110455 1 114 3.92E-32 T 13-10-2018 CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 Hamap MF_01469 Ribonuclease M5 [rnmV]. 2 175 29.856 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 Gene3D G3DSA:3.40.1360.20 1 118 1.5E-22 T 13-10-2018 CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 TIGRFAM TIGR00334 5S_RNA_mat_M5: ribonuclease M5 2 173 2.4E-46 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 Pfam PF01751 Toprim domain 4 80 3.8E-8 T 13-10-2018 IPR006171 TOPRIM domain CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 Pfam PF13331 Domain of unknown function (DUF4093) 89 173 1.5E-27 T 13-10-2018 IPR025156 Ribonuclease M5, C-terminal domain CLM_0123 79211ef692f2ad506735d4f50f7e2238 181 SMART SM00493 3 76 1.2E-8 T 13-10-2018 IPR006171 TOPRIM domain CLM_3208 1feb2a0c8eef21b782f19877c543aa5d 464 PIRSF PIRSF006603 1 458 1.6E-103 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3208 1feb2a0c8eef21b782f19877c543aa5d 464 TIGRFAM TIGR00797 matE: MATE efflux family protein 26 416 2.6E-69 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3208 1feb2a0c8eef21b782f19877c543aa5d 464 Pfam PF01554 MatE 248 409 1.2E-24 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3208 1feb2a0c8eef21b782f19877c543aa5d 464 Pfam PF01554 MatE 26 187 5.0E-29 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0585 82b90dcebf22d042125f23ddae3dc3be 311 Gene3D G3DSA:3.40.50.300 1 234 4.6E-72 T 13-10-2018 CLM_0585 82b90dcebf22d042125f23ddae3dc3be 311 SMART SM00382 28 213 5.5E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0585 82b90dcebf22d042125f23ddae3dc3be 311 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0585 82b90dcebf22d042125f23ddae3dc3be 311 SUPERFAMILY SSF52540 3 222 6.01E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0585 82b90dcebf22d042125f23ddae3dc3be 311 Pfam PF00005 ABC transporter 19 162 4.5E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3858 94f13f9c4f2decdaf6e209e060dca690 117 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 113 1.0E-34 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 CLM_3858 94f13f9c4f2decdaf6e209e060dca690 117 SUPERFAMILY SSF50118 5 116 9.97E-41 T 13-10-2018 CLM_3858 94f13f9c4f2decdaf6e209e060dca690 117 Gene3D G3DSA:2.30.30.110 1 117 1.3E-51 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CLM_3858 94f13f9c4f2decdaf6e209e060dca690 117 PIRSF PIRSF033490 4 116 3.9E-37 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 CLM_3604 7610f5e5467d045291c235625c90c71c 64 SUPERFAMILY SSF54862 1 63 2.79E-13 T 13-10-2018 CLM_3604 7610f5e5467d045291c235625c90c71c 64 Gene3D G3DSA:3.30.70.20 1 64 2.0E-21 T 13-10-2018 CLM_3604 7610f5e5467d045291c235625c90c71c 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 3.9E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CLM_3604 7610f5e5467d045291c235625c90c71c 64 PRINTS PR00352 3Fe-4S ferredoxin signature 49 61 3.9E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CLM_3604 7610f5e5467d045291c235625c90c71c 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 3.9E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CLM_3604 7610f5e5467d045291c235625c90c71c 64 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 63 9.3E-20 T 13-10-2018 CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 SUPERFAMILY SSF52172 1 181 6.97E-42 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 Gene3D G3DSA:3.40.50.2300 1 117 4.7E-38 T 13-10-2018 CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 Gene3D G3DSA:1.10.10.10 118 226 4.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 222 3.7E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 SMART SM00862 148 223 4.6E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 SMART SM00448 2 112 2.1E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2623 eb39d3c6e966c0a9052e0b73814479b0 226 Pfam PF00072 Response regulator receiver domain 4 113 1.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1811 e8356754e2623d5281fd4229c34936dd 242 Pfam PF00977 Histidine biosynthesis protein 3 227 7.9E-75 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 CLM_1811 e8356754e2623d5281fd4229c34936dd 242 Gene3D G3DSA:3.20.20.70 2 241 5.2E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1811 e8356754e2623d5281fd4229c34936dd 242 SUPERFAMILY SSF51366 1 236 5.18E-71 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CLM_1811 e8356754e2623d5281fd4229c34936dd 242 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 232 1.6E-85 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CLM_1811 e8356754e2623d5281fd4229c34936dd 242 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 235 35.987 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CLM_1549 6ee713a618dd914a40adac3cd8b23bbb 345 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 3 338 5.9E-91 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 CLM_1549 6ee713a618dd914a40adac3cd8b23bbb 345 Pfam PF12706 Beta-lactamase superfamily domain 239 309 2.2E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1549 6ee713a618dd914a40adac3cd8b23bbb 345 SUPERFAMILY SSF56281 3 341 1.83E-58 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1549 6ee713a618dd914a40adac3cd8b23bbb 345 Pfam PF00753 Metallo-beta-lactamase superfamily 20 86 8.2E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1549 6ee713a618dd914a40adac3cd8b23bbb 345 Hamap MF_01818 Ribonuclease BN [rbn]. 1 341 31.806 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Gene3D G3DSA:3.40.50.300 260 444 2.6E-63 T 13-10-2018 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 SMART SM00382 292 436 1.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Pfam PF02954 Bacterial regulatory protein, Fis family 539 580 2.4E-5 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Gene3D G3DSA:1.10.8.60 445 526 2.6E-20 T 13-10-2018 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Gene3D G3DSA:3.30.450.40 10 142 3.5E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 296 309 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Pfam PF00158 Sigma-54 interaction domain 272 439 4.6E-68 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 SUPERFAMILY SSF46689 486 580 2.75E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 359 374 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 8 118 6.9E-8 T 13-10-2018 IPR039472 Sporulation stage V protein T, GAF domain CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 Gene3D G3DSA:1.10.10.60 533 580 2.5E-13 T 13-10-2018 CLM_3285 af40a44eaa576e96d0d60d3b0a488f47 587 SUPERFAMILY SSF52540 271 516 6.07E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 Gene3D G3DSA:2.40.50.140 1 67 1.0E-28 T 13-10-2018 CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 SUPERFAMILY SSF50249 1 66 1.51E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 SMART SM00357 3 67 8.4E-30 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 PRINTS PR00050 Cold shock protein signature 4 19 2.1E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 PRINTS PR00050 Cold shock protein signature 40 58 2.1E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 PRINTS PR00050 Cold shock protein signature 24 33 2.1E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 PIRSF PIRSF002599 1 67 9.9E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CLM_1561 ca8bfbb493563c7f161f7da59621ad77 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.7E-28 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Pfam PF08676 MutL C terminal dimerisation domain 479 622 3.6E-43 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 SMART SM00853 480 622 1.2E-48 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Gene3D G3DSA:3.30.1370.100 522 619 6.7E-62 T 13-10-2018 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 662 26.282 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Gene3D G3DSA:2.30.42.20 481 664 6.7E-62 T 13-10-2018 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 117 1.7E-13 T 13-10-2018 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 SUPERFAMILY SSF54211 191 326 3.53E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Gene3D G3DSA:3.30.230.10 214 326 5.3E-33 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 SUPERFAMILY SSF118116 478 664 1.44E-53 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 210 326 8.2E-37 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 SUPERFAMILY SSF55874 3 214 9.82E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 306 3.6E-96 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 SMART SM01340 209 327 5.9E-50 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 CLM_1956 aec01b1fc7bd4c51c7e810b73835cceb 666 Gene3D G3DSA:3.30.565.10 3 213 3.1E-63 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3595 d53fed242080a577f6784cb6053ba9f6 787 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 1 784 1.1E-204 T 13-10-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CLM_3595 d53fed242080a577f6784cb6053ba9f6 787 SUPERFAMILY SSF51998 2 785 1.28E-240 T 13-10-2018 CLM_3595 d53fed242080a577f6784cb6053ba9f6 787 Gene3D G3DSA:3.20.70.40 2 786 2.1E-284 T 13-10-2018 CLM_3595 d53fed242080a577f6784cb6053ba9f6 787 Pfam PF02901 Pyruvate formate lyase-like 2 649 4.4E-236 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CLM_3595 d53fed242080a577f6784cb6053ba9f6 787 Pfam PF01228 Glycine radical 665 768 4.1E-33 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 Pfam PF02780 Transketolase, C-terminal domain 182 302 6.6E-36 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 SUPERFAMILY SSF52518 3 172 4.32E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 Gene3D G3DSA:3.40.50.970 1 181 1.3E-72 T 13-10-2018 CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 Pfam PF02779 Transketolase, pyrimidine binding domain 4 168 1.5E-44 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 SMART SM00861 5 170 3.5E-68 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 SUPERFAMILY SSF52922 179 310 1.96E-40 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_3856 452544422ed0d74c4b93a47d4702aae9 313 Gene3D G3DSA:3.40.50.920 182 312 5.5E-45 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_0233 66acef9fcfdf7dde3ba7d402c575c21d 262 SMART SM00954 45 166 5.8E-41 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CLM_0233 66acef9fcfdf7dde3ba7d402c575c21d 262 SUPERFAMILY SSF81301 5 199 3.27E-56 T 13-10-2018 CLM_0233 66acef9fcfdf7dde3ba7d402c575c21d 262 Gene3D G3DSA:1.10.287.860 149 210 1.1E-23 T 13-10-2018 CLM_0233 66acef9fcfdf7dde3ba7d402c575c21d 262 Pfam PF04607 Region found in RelA / SpoT proteins 45 164 1.0E-34 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CLM_0233 66acef9fcfdf7dde3ba7d402c575c21d 262 Gene3D G3DSA:3.30.460.10 2 147 7.7E-50 T 13-10-2018 CLM_4137 5e88a50d0ed715830a742dbd27aaae6d 81 Pfam PF11823 Protein of unknown function (DUF3343) 3 71 3.7E-23 T 13-10-2018 IPR021778 Domain of unknown function DUF3343 CLM_3462 6e913a827dc85a9f9aa52a165b5a7bbb 199 Pfam PF00753 Metallo-beta-lactamase superfamily 12 183 7.9E-27 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3462 6e913a827dc85a9f9aa52a165b5a7bbb 199 SUPERFAMILY SSF56281 1 199 1.44E-52 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3462 6e913a827dc85a9f9aa52a165b5a7bbb 199 SMART SM00849 12 183 7.6E-43 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3462 6e913a827dc85a9f9aa52a165b5a7bbb 199 Gene3D G3DSA:3.60.15.10 1 199 1.0E-63 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3345 fc4ffbb476663dc92c60ee05c2f4bbf2 386 Pfam PF06898 Putative stage IV sporulation protein YqfD 6 371 9.3E-110 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD CLM_3345 fc4ffbb476663dc92c60ee05c2f4bbf2 386 TIGRFAM TIGR02876 spore_yqfD: sporulation protein YqfD 3 373 8.0E-144 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD CLM_3345 fc4ffbb476663dc92c60ee05c2f4bbf2 386 PIRSF PIRSF029895 1 384 9.1E-80 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD CLM_3841 8be4e096be9cae61a02a57791632d3c8 243 Pfam PF02811 PHP domain 6 148 5.4E-6 T 13-10-2018 IPR004013 PHP domain GO:0003824 CLM_3841 8be4e096be9cae61a02a57791632d3c8 243 Gene3D G3DSA:3.20.20.140 3 242 7.0E-64 T 13-10-2018 CLM_3841 8be4e096be9cae61a02a57791632d3c8 243 SUPERFAMILY SSF89550 4 236 2.62E-56 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_3841 8be4e096be9cae61a02a57791632d3c8 243 SMART SM00481 5 79 2.0E-11 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_3841 8be4e096be9cae61a02a57791632d3c8 243 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 2 243 45.847 T 13-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 CLM_3889 9fc44192662d92df0a66a3d3633e8f2b 356 SUPERFAMILY SSF52518 3 239 1.23E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_3889 9fc44192662d92df0a66a3d3633e8f2b 356 Gene3D G3DSA:3.40.50.920 236 353 9.6E-19 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_3889 9fc44192662d92df0a66a3d3633e8f2b 356 Gene3D G3DSA:3.40.50.970 1 189 2.4E-65 T 13-10-2018 CLM_3889 9fc44192662d92df0a66a3d3633e8f2b 356 SUPERFAMILY SSF52922 247 354 1.57E-19 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_3889 9fc44192662d92df0a66a3d3633e8f2b 356 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 250 344 9.5E-21 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CLM_3889 9fc44192662d92df0a66a3d3633e8f2b 356 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 15 237 5.1E-53 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 CLM_2698 6182b3ecf3c8059b14baf174064c0636 194 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 189 1.6E-49 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CLM_2698 6182b3ecf3c8059b14baf174064c0636 194 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 48 70 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CLM_2698 6182b3ecf3c8059b14baf174064c0636 194 PIRSF PIRSF000847 1 194 8.1E-53 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CLM_2698 6182b3ecf3c8059b14baf174064c0636 194 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 70 2.7E-17 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CLM_2698 6182b3ecf3c8059b14baf174064c0636 194 Gene3D G3DSA:1.20.120.1760 3 179 8.3E-11 T 13-10-2018 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 SUPERFAMILY SSF63520 296 398 6.41E-23 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 555 695 4.2E-33 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Gene3D G3DSA:3.40.50.2300 405 491 1.2E-15 T 13-10-2018 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Gene3D G3DSA:1.10.1790.10 188 286 3.1E-21 T 13-10-2018 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Gene3D G3DSA:3.40.930.10 552 697 2.0E-52 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 SUPERFAMILY SSF52794 405 491 4.45E-11 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Pfam PF08279 HTH domain 7 51 3.8E-6 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Pfam PF08279 HTH domain 94 151 8.1E-8 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Pfam PF00874 PRD domain 305 393 4.2E-22 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Pfam PF00874 PRD domain 197 282 2.0E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Gene3D G3DSA:1.10.10.10 81 153 6.5E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 407 483 2.3E-7 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 602 618 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 SUPERFAMILY SSF63520 181 282 1.7E-21 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Gene3D G3DSA:1.10.1790.10 299 396 4.9E-22 T 13-10-2018 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 SUPERFAMILY SSF55804 552 696 5.62E-35 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CLM_2361 4c9402dbf1f1d71a46f3022bae7f8719 697 Gene3D G3DSA:1.10.10.10 2 80 9.4E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0335 7d192805c43f72dc78c815f4d7d5e464 523 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 461 478 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_0335 7d192805c43f72dc78c815f4d7d5e464 523 SUPERFAMILY SSF55604 448 521 1.18E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0335 7d192805c43f72dc78c815f4d7d5e464 523 Gene3D G3DSA:3.30.1360.60 444 523 4.2E-27 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0335 7d192805c43f72dc78c815f4d7d5e464 523 Pfam PF00367 phosphotransferase system, EIIB 452 483 1.7E-13 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_0335 7d192805c43f72dc78c815f4d7d5e464 523 Pfam PF02378 Phosphotransferase system, EIIC 14 348 2.4E-59 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_0335 7d192805c43f72dc78c815f4d7d5e464 523 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 407 507 2.1E-20 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 Gene3D G3DSA:3.40.50.300 1 215 3.4E-87 T 13-10-2018 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 Pfam PF00406 Adenylate kinase 5 190 4.3E-58 T 13-10-2018 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 PRINTS PR00094 Adenylate kinase signature 160 175 1.9E-35 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 PRINTS PR00094 Adenylate kinase signature 32 46 1.9E-35 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 PRINTS PR00094 Adenylate kinase signature 177 191 1.9E-35 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 PRINTS PR00094 Adenylate kinase signature 4 17 1.9E-35 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 PRINTS PR00094 Adenylate kinase signature 81 97 1.9E-35 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 SUPERFAMILY SSF52540 1 213 6.2E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 1.4E-83 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 Pfam PF05191 Adenylate kinase, active site lid 127 162 1.1E-17 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 Hamap MF_00235 Adenylate kinase [adk]. 1 213 53.692 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3927 2384791fa7981f24c69557dccc9d54e8 216 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 Gene3D G3DSA:3.30.930.10 19 439 9.9E-137 T 13-10-2018 CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 SUPERFAMILY SSF55826 231 351 3.92E-25 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 SUPERFAMILY SSF55681 12 452 6.5E-17 T 13-10-2018 CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 Gene3D G3DSA:3.90.960.10 218 363 9.9E-137 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 Pfam PF03129 Anticodon binding domain 451 540 1.8E-15 T 13-10-2018 IPR004154 Anticodon-binding CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 SUPERFAMILY SSF52954 438 542 2.13E-25 T 13-10-2018 CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 Gene3D G3DSA:3.40.50.800 440 532 9.9E-137 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CLM_3974 bb3e4136dc2527e3cc99600bed12f731 545 Pfam PF04073 Aminoacyl-tRNA editing domain 236 350 1.7E-24 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 SMART SM00470 27 116 3.4E-29 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 SUPERFAMILY SSF109709 108 217 4.97E-32 T 13-10-2018 CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 Gene3D G3DSA:3.90.1530.30 40 102 5.9E-26 T 13-10-2018 CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 Gene3D G3DSA:1.10.10.2830 103 217 5.4E-35 T 13-10-2018 CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 SUPERFAMILY SSF110849 27 151 1.22E-30 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 26 202 2.0E-58 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CLM_4143 95b0b0bfcecb433ef53e6c1555608887 282 Pfam PF02195 ParB-like nuclease domain 29 116 8.1E-25 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 Pfam PF13411 MerR HTH family regulatory protein 9 76 1.4E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 21 34 1.3E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 45 65 1.3E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 10 21 1.3E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 SUPERFAMILY SSF53335 194 347 2.13E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 SMART SM00422 9 78 1.3E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 Pfam PF13847 Methyltransferase domain 208 327 4.0E-20 T 13-10-2018 IPR025714 Methyltransferase domain CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 Gene3D G3DSA:3.40.50.150 192 378 2.9E-33 T 13-10-2018 CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 SUPERFAMILY SSF46955 9 129 9.89E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_0975 057262f6ea6b7d08c5c61b951c5fe832 429 Gene3D G3DSA:1.10.1660.10 7 148 2.9E-32 T 13-10-2018 CLM_2452 0f0440e4a030410abcf324bd42476d70 272 SUPERFAMILY SSF55136 120 272 3.66E-20 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2452 0f0440e4a030410abcf324bd42476d70 272 Pfam PF13411 MerR HTH family regulatory protein 3 71 2.7E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2452 0f0440e4a030410abcf324bd42476d70 272 Pfam PF06445 GyrI-like small molecule binding domain 120 270 2.3E-16 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_2452 0f0440e4a030410abcf324bd42476d70 272 SMART SM00422 2 72 2.5E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2452 0f0440e4a030410abcf324bd42476d70 272 Gene3D G3DSA:3.20.80.10 114 272 8.9E-22 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2452 0f0440e4a030410abcf324bd42476d70 272 SUPERFAMILY SSF46955 2 106 1.94E-21 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_2452 0f0440e4a030410abcf324bd42476d70 272 SMART SM00871 119 270 1.4E-28 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_2452 0f0440e4a030410abcf324bd42476d70 272 Gene3D G3DSA:1.10.1660.10 2 110 2.6E-22 T 13-10-2018 CLM_0020 d9b12e96ea62b98cdcd4e7391ab8bae8 465 Gene3D G3DSA:3.30.9.10 86 284 4.8E-52 T 13-10-2018 CLM_0020 d9b12e96ea62b98cdcd4e7391ab8bae8 465 Gene3D G3DSA:1.10.10.1100 369 445 1.7E-19 T 13-10-2018 CLM_0020 d9b12e96ea62b98cdcd4e7391ab8bae8 465 Pfam PF04324 BFD-like [2Fe-2S] binding domain 382 436 7.3E-16 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_0020 d9b12e96ea62b98cdcd4e7391ab8bae8 465 Gene3D G3DSA:3.50.50.60 4 213 4.8E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0020 d9b12e96ea62b98cdcd4e7391ab8bae8 465 Pfam PF01266 FAD dependent oxidoreductase 4 210 3.0E-29 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CLM_0020 d9b12e96ea62b98cdcd4e7391ab8bae8 465 SUPERFAMILY SSF51905 2 360 1.49E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 SUPERFAMILY SSF52540 262 495 1.49E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 Pfam PF00005 ABC transporter 27 175 8.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 SUPERFAMILY SSF52540 9 232 1.73E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 Pfam PF00005 ABC transporter 279 435 2.7E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 Gene3D G3DSA:3.40.50.300 1 244 3.9E-58 T 13-10-2018 CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 Gene3D G3DSA:3.40.50.300 245 502 5.1E-41 T 13-10-2018 CLM_0270 4b55c1a8d3295b16ba2c61ba477744f2 516 SMART SM00382 35 223 4.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 SMART SM00387 220 332 1.6E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 SUPERFAMILY SSF47384 112 174 1.02E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 Gene3D G3DSA:3.30.565.10 174 329 3.7E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 SUPERFAMILY SSF55874 166 330 7.33E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 223 331 3.0E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 310 1.7E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 329 1.7E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 PRINTS PR00344 Bacterial sensor protein C-terminal signature 258 272 1.7E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2346 c61799f63a3b1b286eb40ecb222563cf 339 Gene3D G3DSA:1.10.287.130 128 173 3.7E-30 T 13-10-2018 CLM_3329 5b369b55e35f6e607896a25fba1ac2cd 267 Gene3D G3DSA:3.40.1390.30 102 225 8.2E-75 T 13-10-2018 CLM_3329 5b369b55e35f6e607896a25fba1ac2cd 267 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 243 1.4E-62 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CLM_3329 5b369b55e35f6e607896a25fba1ac2cd 267 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 246 1.7E-81 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CLM_3329 5b369b55e35f6e607896a25fba1ac2cd 267 SUPERFAMILY SSF102705 4 266 3.14E-89 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CLM_3329 5b369b55e35f6e607896a25fba1ac2cd 267 Gene3D G3DSA:3.40.1390.30 10 235 8.2E-75 T 13-10-2018 CLM_0284 2307f0299100e605df2f579dddbd2a53 156 ProSitePatterns PS01317 SsrA-binding protein. 28 40 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site CLM_0284 2307f0299100e605df2f579dddbd2a53 156 Hamap MF_00023 SsrA-binding protein [smpB]. 1 156 76.684 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CLM_0284 2307f0299100e605df2f579dddbd2a53 156 SUPERFAMILY SSF74982 3 133 1.19E-54 T 13-10-2018 IPR023620 Small protein B CLM_0284 2307f0299100e605df2f579dddbd2a53 156 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 11 133 1.0E-60 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CLM_0284 2307f0299100e605df2f579dddbd2a53 156 Pfam PF01668 SmpB protein 11 152 2.4E-63 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CLM_0284 2307f0299100e605df2f579dddbd2a53 156 Gene3D G3DSA:2.40.280.10 2 129 4.4E-53 T 13-10-2018 IPR023620 Small protein B CLM_0284 2307f0299100e605df2f579dddbd2a53 156 TIGRFAM TIGR00086 smpB: SsrA-binding protein 10 151 1.9E-58 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CLM_1392 871be362ad8416f608829845408ea3b6 63 Pfam PF08141 Small acid-soluble spore protein H family 1 57 3.6E-19 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_1392 871be362ad8416f608829845408ea3b6 63 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 58 15.073 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_1392 871be362ad8416f608829845408ea3b6 63 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 1 57 5.6E-26 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_1392 871be362ad8416f608829845408ea3b6 63 ProDom PD052450 H SPORE ACID-SOLUBLE SMALL SASP SPORULATION SMALL PROTEIN-RELATED SOLUBLE RBL04815 1 57 0.002 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 131 148 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 PIRSF PIRSF000097 1 272 1.1E-89 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 SUPERFAMILY SSF51430 6 266 1.1E-90 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_3817 d4929717281c72f06c0f7237b65c3857 281 Gene3D G3DSA:3.20.20.100 1 281 2.3E-113 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_3817 d4929717281c72f06c0f7237b65c3857 281 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 Pfam PF00248 Aldo/keto reductase family 16 267 1.5E-47 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CLM_3817 d4929717281c72f06c0f7237b65c3857 281 PRINTS PR00069 Aldo-keto reductase signature 93 111 2.7E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 PRINTS PR00069 Aldo-keto reductase signature 131 148 2.7E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 PRINTS PR00069 Aldo-keto reductase signature 165 194 2.7E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 PRINTS PR00069 Aldo-keto reductase signature 37 61 2.7E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3817 d4929717281c72f06c0f7237b65c3857 281 PRINTS PR00069 Aldo-keto reductase signature 202 226 2.7E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3785 d8e103c00891d90d2bdfaae571a64e16 363 Gene3D G3DSA:3.40.50.300 8 211 2.7E-7 T 13-10-2018 CLM_3785 d8e103c00891d90d2bdfaae571a64e16 363 SUPERFAMILY SSF52540 11 76 5.58E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3785 d8e103c00891d90d2bdfaae571a64e16 363 SUPERFAMILY SSF52540 116 296 7.53E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 SUPERFAMILY SSF55021 3 67 4.23E-5 T 13-10-2018 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Gene3D G3DSA:3.30.450.20 89 193 3.2E-14 T 13-10-2018 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 SMART SM00382 225 369 4.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 472 517 1.0E-10 T 13-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Gene3D G3DSA:3.30.70.260 1 79 1.8E-19 T 13-10-2018 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 SUPERFAMILY SSF55785 77 180 4.4E-8 T 13-10-2018 IPR035965 PAS domain superfamily CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Gene3D G3DSA:3.40.50.300 194 376 2.4E-64 T 13-10-2018 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Gene3D G3DSA:1.10.8.60 377 447 3.5E-21 T 13-10-2018 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 SUPERFAMILY SSF52540 204 450 4.48E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Pfam PF00158 Sigma-54 interaction domain 205 373 1.2E-67 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 423 432 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 SUPERFAMILY SSF46689 470 517 1.15E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Pfam PF13426 PAS domain 90 185 2.7E-6 T 13-10-2018 IPR000014 PAS domain CLM_0032 0b2ef9aaa04a27f2cdeb1e949be65959 520 Gene3D G3DSA:1.10.10.60 463 518 4.5E-11 T 13-10-2018 CLM_4065 8b8d6ae3c8f6beafffacea2697457e65 408 Pfam PF07690 Major Facilitator Superfamily 38 336 1.8E-32 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_4065 8b8d6ae3c8f6beafffacea2697457e65 408 Gene3D G3DSA:1.20.1250.20 25 402 8.5E-46 T 13-10-2018 CLM_4065 8b8d6ae3c8f6beafffacea2697457e65 408 SUPERFAMILY SSF103473 24 399 4.05E-54 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 9 51 9.4E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 TIGRFAM TIGR02851 spore_V_T: stage V sporulation protein T 2 182 1.0E-89 T 13-10-2018 IPR014213 Sporulation stage V, protein T CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 Gene3D G3DSA:2.10.260.10 1 51 2.9E-23 T 13-10-2018 CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 SUPERFAMILY SSF89447 1 51 3.66E-14 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 SUPERFAMILY SSF55781 96 178 2.35E-7 T 13-10-2018 CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 Gene3D G3DSA:3.30.450.40 56 183 2.2E-40 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 1.6E-14 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 SMART SM00966 8 52 1.6E-9 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 54 182 7.2E-47 T 13-10-2018 IPR039472 Sporulation stage V protein T, GAF domain CLM_4029 a139f907579d15a2f153aa1922a1b1e1 183 PIRSF PIRSF026579 1 183 1.2E-89 T 13-10-2018 IPR014213 Sporulation stage V, protein T CLM_3731 5b9e04e81d7fd4b9d2eb962eb789f5bb 249 Pfam PF01171 PP-loop family 31 211 8.8E-20 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CLM_3731 5b9e04e81d7fd4b9d2eb962eb789f5bb 249 PIRSF PIRSF004976 2 249 3.3E-59 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 CLM_3731 5b9e04e81d7fd4b9d2eb962eb789f5bb 249 SUPERFAMILY SSF52402 8 222 6.4E-48 T 13-10-2018 CLM_3731 5b9e04e81d7fd4b9d2eb962eb789f5bb 249 Gene3D G3DSA:3.40.50.620 3 247 5.2E-52 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 Gene3D G3DSA:3.40.50.12090 58 153 3.4E-16 T 13-10-2018 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 Pfam PF01841 Transglutaminase-like superfamily 915 1021 8.0E-13 T 13-10-2018 IPR002931 Transglutaminase-like CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 SMART SM00460 962 1023 2.3E-7 T 13-10-2018 IPR002931 Transglutaminase-like CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 SUPERFAMILY SSF54001 890 1103 3.93E-26 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 Gene3D G3DSA:3.10.620.30 888 1047 1.4E-18 T 13-10-2018 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 Pfam PF04122 Putative cell wall binding repeat 2 36 122 7.9E-20 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 Pfam PF04122 Putative cell wall binding repeat 2 234 325 2.4E-15 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 Pfam PF04122 Putative cell wall binding repeat 2 135 222 2.3E-14 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 PRINTS PR01217 Proline rich extensin signature 339 360 1.0E-12 T 13-10-2018 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 PRINTS PR01217 Proline rich extensin signature 400 425 1.0E-12 T 13-10-2018 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 PRINTS PR01217 Proline rich extensin signature 378 395 1.0E-12 T 13-10-2018 CLM_0451 b5a22fa173896d7f32b438b4049e7ceb 1170 PRINTS PR01217 Proline rich extensin signature 361 377 1.0E-12 T 13-10-2018 CLM_3173 8d4cc92ff1ea8df9fab03df13b4799dc 305 TIGRFAM TIGR03814 Gln_ase: glutaminase A 5 305 5.4E-128 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CLM_3173 8d4cc92ff1ea8df9fab03df13b4799dc 305 SUPERFAMILY SSF56601 4 305 3.16E-117 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_3173 8d4cc92ff1ea8df9fab03df13b4799dc 305 Pfam PF04960 Glutaminase 19 305 2.6E-122 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CLM_3173 8d4cc92ff1ea8df9fab03df13b4799dc 305 Hamap MF_00313 Glutaminase [glsA]. 1 305 48.21 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CLM_3173 8d4cc92ff1ea8df9fab03df13b4799dc 305 Gene3D G3DSA:3.40.710.10 1 305 4.9E-123 T 13-10-2018 CLM_2090 be207e621263c793468a257210760698 298 SUPERFAMILY SSF52317 21 291 9.16E-83 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2090 be207e621263c793468a257210760698 298 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 49 288 1.0E-77 T 13-10-2018 CLM_2090 be207e621263c793468a257210760698 298 PIRSF PIRSF000450 1 292 3.5E-117 T 13-10-2018 IPR033752 MetA family CLM_2090 be207e621263c793468a257210760698 298 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 30 298 37.606 T 13-10-2018 IPR033752 MetA family CLM_2090 be207e621263c793468a257210760698 298 Gene3D G3DSA:3.40.50.880 1 295 4.6E-111 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2090 be207e621263c793468a257210760698 298 Pfam PF04204 Homoserine O-succinyltransferase 3 289 2.7E-113 T 13-10-2018 IPR033752 MetA family CLM_2090 be207e621263c793468a257210760698 298 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 289 1.5E-110 T 13-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 CLM_1896 ae7ab9d7307a2eed99ebcf493e9a0828 183 Pfam PF11611 Domain of unknown function (DUF4352) 56 176 1.9E-27 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 CLM_1896 ae7ab9d7307a2eed99ebcf493e9a0828 183 Gene3D G3DSA:2.60.40.1240 55 183 3.7E-30 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLM_0955 c72e6de34a94bcdff66763f49aa69fca 438 Pfam PF05525 Branched-chain amino acid transport protein 6 424 5.7E-119 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CLM_0955 c72e6de34a94bcdff66763f49aa69fca 438 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 413 1.1E-102 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CLM_0547 88cdf2c21dd7173c86ef87817180b7ca 286 Pfam PF04536 TPM domain 45 164 1.0E-34 T 13-10-2018 IPR007621 TPM domain CLM_0547 88cdf2c21dd7173c86ef87817180b7ca 286 Gene3D G3DSA:3.10.310.50 30 176 5.1E-45 T 13-10-2018 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 1.7E-82 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 3.0E-37 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 SMART SM00878 336 442 9.2E-60 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 SUPERFAMILY SSF52440 1 111 2.16E-48 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CLM_4088 9f8bd2130c2582379c2d06241673d749 448 SUPERFAMILY SSF51246 331 445 8.37E-43 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 2 446 5.4E-227 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 SUPERFAMILY SSF56059 83 349 5.72E-74 T 13-10-2018 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 3.7E-45 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_4088 9f8bd2130c2582379c2d06241673d749 448 Gene3D G3DSA:3.30.470.130 1 447 7.7E-194 T 13-10-2018 CLM_0827 344941327901d24e3152ac47673a776e 227 Gene3D G3DSA:3.40.50.300 1 227 7.1E-68 T 13-10-2018 CLM_0827 344941327901d24e3152ac47673a776e 227 SMART SM00382 32 219 1.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0827 344941327901d24e3152ac47673a776e 227 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0827 344941327901d24e3152ac47673a776e 227 Pfam PF00005 ABC transporter 23 169 2.1E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0827 344941327901d24e3152ac47673a776e 227 SUPERFAMILY SSF52540 3 225 1.18E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3291 664c0653cd009b154c58fd3fd0285603 322 SUPERFAMILY SSF81345 7 315 7.45E-76 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_3291 664c0653cd009b154c58fd3fd0285603 322 Gene3D G3DSA:1.10.3470.10 3 321 4.9E-95 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_3291 664c0653cd009b154c58fd3fd0285603 322 Pfam PF01032 FecCD transport family 14 315 5.0E-86 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_0652 20a95bf30324662894d3d5a74fe8515c 547 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 376 495 3.3E-38 T 13-10-2018 IPR025299 CstA, C-terminal domain CLM_0652 20a95bf30324662894d3d5a74fe8515c 547 Pfam PF02554 Carbon starvation protein CstA 1 351 5.0E-126 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 CLM_2970 04cec253e314c2ef086f2546477c6eff 307 Gene3D G3DSA:3.40.1390.20 1 127 6.2E-37 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLM_2970 04cec253e314c2ef086f2546477c6eff 307 SUPERFAMILY SSF75138 3 128 3.53E-32 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLM_2970 04cec253e314c2ef086f2546477c6eff 307 Gene3D G3DSA:3.40.50.300 128 307 9.4E-63 T 13-10-2018 CLM_2970 04cec253e314c2ef086f2546477c6eff 307 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 1 303 38.406 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 CLM_2970 04cec253e314c2ef086f2546477c6eff 307 SUPERFAMILY SSF53795 132 291 1.95E-36 T 13-10-2018 CLM_2970 04cec253e314c2ef086f2546477c6eff 307 Pfam PF07475 HPr Serine kinase C-terminal domain 126 288 1.4E-68 T 13-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 CLM_2970 04cec253e314c2ef086f2546477c6eff 307 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 3 298 4.9E-105 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 CLM_2970 04cec253e314c2ef086f2546477c6eff 307 Pfam PF02603 HPr Serine kinase N terminus 2 124 1.6E-38 T 13-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 CLM_2083 635df9679c96976a3d291a2bd6d73234 473 Pfam PF00589 Phage integrase family 287 440 1.4E-10 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_2083 635df9679c96976a3d291a2bd6d73234 473 SUPERFAMILY SSF56349 165 439 1.97E-19 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_2083 635df9679c96976a3d291a2bd6d73234 473 Gene3D G3DSA:1.10.443.10 280 466 6.3E-16 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_2083 635df9679c96976a3d291a2bd6d73234 473 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 58 116 2.0E-6 T 13-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain CLM_2083 635df9679c96976a3d291a2bd6d73234 473 Gene3D G3DSA:1.10.150.130 160 265 5.9E-9 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.9E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.9E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 Gene3D G3DSA:1.10.10.60 1 54 3.5E-20 T 13-10-2018 CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 SUPERFAMILY SSF46689 8 65 1.28E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 SUPERFAMILY SSF48498 92 195 8.9E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_0728 ee90b45d4eca02c82f51a0840b03e08c 205 Gene3D G3DSA:1.10.357.10 56 205 1.8E-30 T 13-10-2018 CLM_2134 2a1050f8c198aabef91e99cdd60c7275 467 Gene3D G3DSA:3.90.1150.160 362 463 2.9E-29 T 13-10-2018 CLM_2134 2a1050f8c198aabef91e99cdd60c7275 467 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 51 382 2.3E-71 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 CLM_2134 2a1050f8c198aabef91e99cdd60c7275 467 SUPERFAMILY SSF53383 12 447 2.2E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2134 2a1050f8c198aabef91e99cdd60c7275 467 Gene3D G3DSA:3.40.640.10 67 361 9.3E-80 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2134 2a1050f8c198aabef91e99cdd60c7275 467 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 22 447 4.7E-200 T 13-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 CLM_3825 2a84e9f28b45cb91d3fe1e2c86633174 68 SUPERFAMILY SSF46785 2 61 8.67E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3825 2a84e9f28b45cb91d3fe1e2c86633174 68 Gene3D G3DSA:1.10.10.10 1 67 8.5E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3822 e308565d5c81757f14eaba8418298fb9 135 Gene3D G3DSA:1.10.10.60 58 109 6.9E-16 T 13-10-2018 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 SUPERFAMILY SSF46689 5 55 1.25E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 7.3E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 7.3E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 Gene3D G3DSA:1.10.10.60 2 57 4.0E-17 T 13-10-2018 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 SUPERFAMILY SSF46689 57 105 9.86E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 Pfam PF12833 Helix-turn-helix domain 27 105 3.3E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_3822 e308565d5c81757f14eaba8418298fb9 135 SMART SM00342 21 104 8.0E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 SUPERFAMILY SSF52540 2 219 8.94E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 SUPERFAMILY SSF48019 234 415 5.67E-66 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 SMART SM00382 37 152 7.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 42 151 7.8E-15 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 Gene3D G3DSA:3.40.50.300 1 151 1.9E-40 T 13-10-2018 CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 Gene3D G3DSA:1.10.3710.10 328 416 5.6E-19 T 13-10-2018 CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 Pfam PF16193 AAA C-terminal domain 174 248 8.0E-18 T 13-10-2018 IPR032423 AAA C-terminal domain CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 Gene3D G3DSA:1.20.272.10 224 327 6.0E-38 T 13-10-2018 CLM_2877 15e8efc3080c2c52ea6b768bb17ac9ae 416 Pfam PF12002 MgsA AAA+ ATPase C terminal 249 413 5.9E-61 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal CLM_0602 39de4823a35522dd3745507dab51ec4a 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 418 6.9E-125 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 Gene3D G3DSA:3.30.930.10 110 425 7.8E-103 T 13-10-2018 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 SUPERFAMILY SSF46589 1 117 2.93E-25 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 225 401 8.9E-27 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 111 2.1E-28 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 PIRSF PIRSF001529 1 425 2.3E-131 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 PRINTS PR00981 Seryl-tRNA synthetase signature 267 279 1.8E-20 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 PRINTS PR00981 Seryl-tRNA synthetase signature 319 332 1.8E-20 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 PRINTS PR00981 Seryl-tRNA synthetase signature 279 292 1.8E-20 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 PRINTS PR00981 Seryl-tRNA synthetase signature 336 352 1.8E-20 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 PRINTS PR00981 Seryl-tRNA synthetase signature 354 370 1.8E-20 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 SUPERFAMILY SSF55681 121 423 1.01E-74 T 13-10-2018 CLM_0602 39de4823a35522dd3745507dab51ec4a 425 Gene3D G3DSA:1.10.287.40 1 109 1.8E-29 T 13-10-2018 CLM_1782 3c30a86caf4aaf40218931c1bb959c5b 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 115 1.6E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_1782 3c30a86caf4aaf40218931c1bb959c5b 120 Gene3D G3DSA:3.10.180.10 6 119 1.2E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_1782 3c30a86caf4aaf40218931c1bb959c5b 120 SUPERFAMILY SSF54593 11 119 1.61E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SMART SM00896 699 792 1.4E-49 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Gene3D G3DSA:3.30.930.10 490 685 3.1E-56 T 13-10-2018 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SUPERFAMILY SSF46955 406 478 3.75E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SMART SM00874 406 474 3.9E-24 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Gene3D G3DSA:3.30.56.10 407 478 3.4E-24 T 13-10-2018 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Pfam PF03484 tRNA synthetase B5 domain 411 474 1.4E-17 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Pfam PF03483 B3/4 domain 217 387 1.8E-67 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SUPERFAMILY SSF50249 41 192 1.49E-42 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SMART SM00873 216 389 4.1E-89 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Gene3D G3DSA:3.50.40.10 200 400 1.9E-83 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 792 9.7E-274 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SUPERFAMILY SSF55681 470 686 1.74E-47 T 13-10-2018 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SUPERFAMILY SSF54991 695 792 2.09E-33 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Pfam PF03147 Ferredoxin-fold anticodon binding domain 699 792 1.2E-32 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Gene3D G3DSA:3.30.70.380 700 793 1.5E-34 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 SUPERFAMILY SSF56037 204 399 3.66E-69 T 13-10-2018 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Gene3D G3DSA:3.30.56.10 5 183 7.4E-66 T 13-10-2018 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 786 42.58 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Pfam PF01588 Putative tRNA binding domain 45 147 2.8E-19 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CLM_3537 d14f4d235da9384e3d6cbea4cdbf04b6 793 Gene3D G3DSA:2.40.50.140 39 156 7.4E-66 T 13-10-2018 CLM_4133 efc7b0ec2a082fa8e56e6ed1bbf20cfc 94 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.0E-29 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4133 efc7b0ec2a082fa8e56e6ed1bbf20cfc 94 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.282 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 CLM_4133 efc7b0ec2a082fa8e56e6ed1bbf20cfc 94 Gene3D G3DSA:3.30.70.60 1 94 3.0E-35 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CLM_4133 efc7b0ec2a082fa8e56e6ed1bbf20cfc 94 SUPERFAMILY SSF54995 1 93 2.75E-35 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4133 efc7b0ec2a082fa8e56e6ed1bbf20cfc 94 Pfam PF01250 Ribosomal protein S6 3 91 2.1E-32 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 Pfam PF04055 Radical SAM superfamily 24 216 1.1E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 Gene3D G3DSA:3.20.20.70 72 276 2.7E-45 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 Gene3D G3DSA:3.20.20.70 2 53 2.1E-14 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 SUPERFAMILY SSF54862 43 94 2.25E-12 T 13-10-2018 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 SUPERFAMILY SSF102114 26 263 8.24E-18 T 13-10-2018 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 Pfam PF13353 4Fe-4S single cluster domain 15 181 5.0E-12 T 13-10-2018 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 4 277 2.4E-119 T 13-10-2018 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW CLM_4072 c792e74061b65e453a27902bf53d5c25 278 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 PIRSF PIRSF000371 1 277 6.5E-74 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CLM_4072 c792e74061b65e453a27902bf53d5c25 278 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 45 56 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0576 76ae0706890633f09472f9920a83fb2e 212 Pfam PF02517 CAAX protease self-immunity 118 206 7.7E-11 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_1139 73f8f2c4de6876058664c3d4b550a9c2 107 Gene3D G3DSA:3.30.1460.30 4 74 2.5E-10 T 13-10-2018 CLM_1139 73f8f2c4de6876058664c3d4b550a9c2 107 SUPERFAMILY SSF159894 6 97 9.68E-23 T 13-10-2018 CLM_1139 73f8f2c4de6876058664c3d4b550a9c2 107 Pfam PF04993 TfoX N-terminal domain 13 69 3.0E-11 T 13-10-2018 IPR007076 TfoX, N-terminal CLM_0829 de53260dad04ce123f6fe05f1ff86b09 162 Pfam PF01047 MarR family 34 91 1.1E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0829 de53260dad04ce123f6fe05f1ff86b09 162 Gene3D G3DSA:1.10.10.10 2 146 3.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0829 de53260dad04ce123f6fe05f1ff86b09 162 SUPERFAMILY SSF46785 16 148 1.07E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0829 de53260dad04ce123f6fe05f1ff86b09 162 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 99 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_0829 de53260dad04ce123f6fe05f1ff86b09 162 SMART SM00347 26 129 1.4E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1412 e9b2506121b34871517f83f1309f9321 313 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 9 306 2.1E-107 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 CLM_1412 e9b2506121b34871517f83f1309f9321 313 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 295 1.3E-44 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 197 213 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 42 57 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 269 287 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 235 256 1.4E-65 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 SUPERFAMILY SSF51905 3 305 9.58E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1412 e9b2506121b34871517f83f1309f9321 313 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CLM_1412 e9b2506121b34871517f83f1309f9321 313 Gene3D G3DSA:3.50.50.60 124 246 4.0E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.0E-36 T 13-10-2018 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.0E-36 T 13-10-2018 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 1.0E-36 T 13-10-2018 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 1.0E-36 T 13-10-2018 CLM_1412 e9b2506121b34871517f83f1309f9321 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 1.0E-36 T 13-10-2018 CLM_1412 e9b2506121b34871517f83f1309f9321 313 Gene3D G3DSA:3.50.50.60 11 305 4.0E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2131 9967e6114007fd68e4a39bb28478e287 246 SUPERFAMILY SSF55120 1 245 6.91E-75 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 4.6E-56 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 Gene3D G3DSA:3.30.70.660 107 244 7.0E-46 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 32.628 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 Gene3D G3DSA:3.30.70.580 1 106 1.3E-30 T 13-10-2018 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 Pfam PF01416 tRNA pseudouridine synthase 9 87 1.9E-5 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 Pfam PF01416 tRNA pseudouridine synthase 144 246 3.7E-25 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_2131 9967e6114007fd68e4a39bb28478e287 246 PIRSF PIRSF001430 1 246 3.3E-73 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 Pfam PF02261 Aspartate decarboxylase 1 114 1.8E-54 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 Gene3D G3DSA:2.40.40.20 1 122 3.6E-54 T 13-10-2018 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 95 1.0E-33 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 1.1E-52 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 127 70.833 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 PIRSF PIRSF006246 1 127 1.8E-55 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0370 70af698bb94828cb0bf7e98d04b36bc0 127 SUPERFAMILY SSF50692 1 121 2.36E-50 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 SUPERFAMILY SSF46689 446 541 1.52E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 SMART SM00382 252 396 2.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 Gene3D G3DSA:1.10.10.60 489 542 4.6E-16 T 13-10-2018 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 SUPERFAMILY SSF52540 231 474 2.13E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 505 522 8.2E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 522 542 8.2E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 446 455 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 Pfam PF00158 Sigma-54 interaction domain 232 399 3.8E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 Gene3D G3DSA:3.40.50.300 216 403 8.8E-65 T 13-10-2018 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 256 269 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 Pfam PF02954 Bacterial regulatory protein, Fis family 499 539 1.0E-11 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 Gene3D G3DSA:1.10.8.60 404 484 1.2E-22 T 13-10-2018 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 Gene3D G3DSA:3.30.450.20 88 195 1.6E-10 T 13-10-2018 CLM_3608 6dd5b3aa9ab8a11c388369a98c298efb 542 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 319 334 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_0733 1cb2219fd7dde01e3491d126fa9020be 196 SUPERFAMILY SSF109604 11 116 2.34E-9 T 13-10-2018 CLM_0733 1cb2219fd7dde01e3491d126fa9020be 196 TIGRFAM TIGR00277 HDIG: HDIG domain 21 89 1.5E-7 T 13-10-2018 IPR006675 HDIG domain CLM_0733 1cb2219fd7dde01e3491d126fa9020be 196 Gene3D G3DSA:1.10.3210.10 2 91 1.5E-6 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 SUPERFAMILY SSF56784 511 663 8.71E-20 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 SUPERFAMILY SSF81665 3 853 5.89E-40 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Gene3D G3DSA:3.40.1110.10 335 525 2.0E-122 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Gene3D G3DSA:2.70.150.10 16 228 2.0E-122 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 620 639 5.1E-8 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 162 176 5.1E-8 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 518 529 5.1E-8 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 325 339 5.1E-8 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 84 368 8.9E-23 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Pfam PF00122 E1-E2 ATPase 113 304 1.5E-35 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 SUPERFAMILY SSF81653 118 222 3.14E-24 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 SUPERFAMILY SSF81660 336 525 2.14E-35 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Pfam PF00690 Cation transporter/ATPase, N-terminus 6 71 8.4E-10 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Gene3D G3DSA:3.40.50.1000 322 663 2.0E-122 T 13-10-2018 IPR023214 HAD superfamily CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Pfam PF13246 Cation transport ATPase (P-type) 376 461 1.6E-15 T 13-10-2018 CLM_3366 018c0d41b0f4168e2f0e3e4b1a5c42ff 864 Gene3D G3DSA:1.20.1110.10 55 853 2.0E-122 T 13-10-2018 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Gene3D G3DSA:1.10.8.60 774 865 7.3E-28 T 13-10-2018 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 207 308 6.3E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 715 729 2.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 608 626 2.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 653 671 2.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 682 700 2.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Gene3D G3DSA:3.40.50.300 557 772 7.6E-85 T 13-10-2018 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 SUPERFAMILY SSF81923 4 160 1.31E-38 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 68 5.2E-13 T 13-10-2018 IPR004176 Clp, N-terminal CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 97 149 1.7E-12 T 13-10-2018 IPR004176 Clp, N-terminal CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Gene3D G3DSA:3.40.50.300 347 551 1.7E-71 T 13-10-2018 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 298 310 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Gene3D G3DSA:1.10.1780.10 1 152 4.0E-33 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 SMART SM01086 774 863 9.3E-36 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Pfam PF07724 AAA domain (Cdc48 subfamily) 603 768 1.5E-55 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 774 853 1.7E-26 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 SMART SM00382 604 756 2.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 SMART SM00382 202 348 4.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 Gene3D G3DSA:3.40.50.300 153 346 2.1E-74 T 13-10-2018 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 638 656 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 SUPERFAMILY SSF52540 162 552 7.38E-100 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 SUPERFAMILY SSF52540 553 856 2.65E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0480 e12fb54d02dcd7cab42754bf89363261 866 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 863 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 CLM_1841 e03ed6bc9f205032a0ca43ee9fd0d24b 329 SMART SM00342 240 323 3.7E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1841 e03ed6bc9f205032a0ca43ee9fd0d24b 329 Gene3D G3DSA:1.10.10.60 274 328 4.1E-17 T 13-10-2018 CLM_1841 e03ed6bc9f205032a0ca43ee9fd0d24b 329 Pfam PF12833 Helix-turn-helix domain 246 324 2.5E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1841 e03ed6bc9f205032a0ca43ee9fd0d24b 329 Gene3D G3DSA:1.10.10.60 214 273 2.4E-11 T 13-10-2018 CLM_1841 e03ed6bc9f205032a0ca43ee9fd0d24b 329 SUPERFAMILY SSF46689 225 274 1.39E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1841 e03ed6bc9f205032a0ca43ee9fd0d24b 329 SUPERFAMILY SSF46689 277 324 3.45E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 SMART SM00421 145 202 4.5E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 SMART SM00448 2 114 1.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 Pfam PF00072 Response regulator receiver domain 4 114 1.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 2.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 Gene3D G3DSA:3.40.50.12740 2 207 2.4E-59 T 13-10-2018 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 SUPERFAMILY SSF46894 146 204 6.12E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 SUPERFAMILY SSF52172 2 132 3.27E-30 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0584 e628ab3952b59063df9713a3038fc2d6 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1458 366e68652d57ea3579199e82d1ee1fb8 698 Gene3D G3DSA:2.60.120.260 326 461 3.2E-23 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CLM_1458 366e68652d57ea3579199e82d1ee1fb8 698 Pfam PF03170 Bacterial cellulose synthase subunit 34 600 9.9E-104 T 13-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 CLM_1458 366e68652d57ea3579199e82d1ee1fb8 698 Gene3D G3DSA:2.60.120.260 25 158 4.4E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CLM_3107 e326576f30ee22630dff85becdaf340c 134 Pfam PF05130 FlgN protein 1 133 2.6E-23 T 13-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 CLM_3107 e326576f30ee22630dff85becdaf340c 134 Gene3D G3DSA:1.20.58.300 1 120 8.9E-6 T 13-10-2018 CLM_3107 e326576f30ee22630dff85becdaf340c 134 SUPERFAMILY SSF140566 3 120 2.09E-17 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 CLM_0350 5045a3ae74f10156c530952b1b0afee6 215 Pfam PF01081 KDPG and KHG aldolase 8 198 1.4E-37 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CLM_0350 5045a3ae74f10156c530952b1b0afee6 215 SUPERFAMILY SSF51569 3 209 4.58E-57 T 13-10-2018 CLM_0350 5045a3ae74f10156c530952b1b0afee6 215 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 8 208 1.3E-48 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CLM_0350 5045a3ae74f10156c530952b1b0afee6 215 Gene3D G3DSA:3.20.20.70 2 214 5.4E-64 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2862 4923c120089fb8c66d8f10e9ce238fa4 408 Pfam PF16325 Peptidase family U32 C-terminal domain 323 404 2.7E-19 T 13-10-2018 IPR032525 Peptidase family U32, C-terminal CLM_2862 4923c120089fb8c66d8f10e9ce238fa4 408 Gene3D G3DSA:2.40.30.10 321 408 8.4E-22 T 13-10-2018 CLM_2862 4923c120089fb8c66d8f10e9ce238fa4 408 ProSitePatterns PS01276 Peptidase family U32 signature. 166 184 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CLM_2862 4923c120089fb8c66d8f10e9ce238fa4 408 Pfam PF01136 Peptidase family U32 80 312 2.4E-102 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CLM_3580 218f941f791679781d5479c88038fbad 342 Gene3D G3DSA:3.40.190.10 45 318 5.4E-48 T 13-10-2018 CLM_3580 218f941f791679781d5479c88038fbad 342 Pfam PF13379 NMT1-like family 45 267 2.0E-23 T 13-10-2018 CLM_3580 218f941f791679781d5479c88038fbad 342 SUPERFAMILY SSF53850 44 263 3.19E-36 T 13-10-2018 CLM_3580 218f941f791679781d5479c88038fbad 342 Gene3D G3DSA:3.40.190.10 120 223 5.4E-48 T 13-10-2018 CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 Gene3D G3DSA:2.10.240.10 209 247 3.2E-15 T 13-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 Gene3D G3DSA:2.40.30.10 5 96 5.0E-26 T 13-10-2018 CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 PIRSF PIRSF006816 5 251 2.3E-69 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 SUPERFAMILY SSF52343 93 245 3.4E-27 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 209 245 1.2E-15 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 Gene3D G3DSA:3.40.50.80 102 208 1.9E-19 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 SUPERFAMILY SSF63380 7 98 1.13E-20 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_3649 b245f46aae4836c3e77a8fb376b76bc9 251 Hamap MF_01211 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [pyrK]. 8 247 35.146 T 13-10-2018 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit CLM_0483 e6d7ae89f3bb0edd57e103d6f5b0a244 326 Pfam PF01238 Phosphomannose isomerase type I 5 103 2.1E-11 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CLM_0483 e6d7ae89f3bb0edd57e103d6f5b0a244 326 PIRSF PIRSF036894 1 310 2.6E-90 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 CLM_0483 e6d7ae89f3bb0edd57e103d6f5b0a244 326 Gene3D G3DSA:2.60.120.10 223 310 2.8E-16 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0483 e6d7ae89f3bb0edd57e103d6f5b0a244 326 Gene3D G3DSA:2.60.120.10 1 219 4.5E-66 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0483 e6d7ae89f3bb0edd57e103d6f5b0a244 326 SUPERFAMILY SSF51182 1 311 2.0E-74 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 34.767 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 Pfam PF01467 Cytidylyltransferase-like 5 133 1.2E-23 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 1.2E-47 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 1.2E-47 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 1.2E-47 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 1.2E-47 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 1.2E-47 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 2.8E-63 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 Gene3D G3DSA:3.40.50.620 1 163 2.0E-60 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 59 8.2E-19 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CLM_2793 7bdcac58ad50c36c77550971e85c3391 164 SUPERFAMILY SSF52374 1 156 6.14E-46 T 13-10-2018 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 472 7.9E-187 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Gene3D G3DSA:3.40.1380.20 335 468 7.5E-194 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 ProSitePatterns PS00110 Pyruvate kinase active site signature. 214 226 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 SUPERFAMILY SSF52935 322 473 4.71E-43 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Gene3D G3DSA:3.50.30.10 474 585 1.6E-25 T 13-10-2018 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Gene3D G3DSA:3.20.20.60 3 334 7.5E-194 T 13-10-2018 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Pfam PF00391 PEP-utilising enzyme, mobile domain 505 575 6.6E-16 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 1.8E-144 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Pfam PF02887 Pyruvate kinase, alpha/beta domain 357 470 6.0E-37 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 SUPERFAMILY SSF51621 1 340 2.16E-99 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 Gene3D G3DSA:2.40.33.10 70 167 7.5E-194 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 SUPERFAMILY SSF52009 465 583 2.49E-25 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 268 292 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 312 328 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 216 242 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 293 311 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 185 199 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 PRINTS PR01050 Pyruvate kinase family signature 243 267 2.8E-79 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CLM_3834 e7ff8ddee23e7ce55ad3d4115ed61030 585 SUPERFAMILY SSF50800 70 166 4.01E-28 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 131 8.4E-20 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 TIGRFAM TIGR00476 selD: selenide, water dikinase 1 289 1.6E-113 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 SUPERFAMILY SSF55326 2 135 3.14E-40 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 Gene3D G3DSA:3.90.650.10 138 321 2.5E-56 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 Hamap MF_00625 Selenide, water dikinase [selD]. 3 321 38.111 T 13-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 PIRSF PIRSF036407 1 321 3.2E-121 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 SUPERFAMILY SSF56042 137 318 1.38E-50 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 Pfam PF02769 AIR synthase related protein, C-terminal domain 143 320 5.4E-29 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CLM_3372 5a9833e6ae8d64b6344464cbc396ba18 321 Gene3D G3DSA:3.30.1330.10 1 137 6.3E-44 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_0889 5e79cb9fbc15c249c7e8f57b017b3702 121 SUPERFAMILY SSF52788 1 110 1.18E-16 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLM_0889 5e79cb9fbc15c249c7e8f57b017b3702 121 SMART SM00226 1 111 1.9E-4 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0889 5e79cb9fbc15c249c7e8f57b017b3702 121 Gene3D G3DSA:3.40.50.2300 1 117 1.8E-19 T 13-10-2018 CLM_0190 eb24a47ccd1ee923d7b477c0c4087c43 162 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 79 124 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_0190 eb24a47ccd1ee923d7b477c0c4087c43 162 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 134 2.1E-18 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_0190 eb24a47ccd1ee923d7b477c0c4087c43 162 PIRSF PIRSF006019 1 161 1.0E-35 T 13-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CLM_0190 eb24a47ccd1ee923d7b477c0c4087c43 162 SUPERFAMILY SSF53927 8 140 2.58E-25 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_0190 eb24a47ccd1ee923d7b477c0c4087c43 162 Gene3D G3DSA:3.40.140.10 1 156 1.5E-31 T 13-10-2018 CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 SUPERFAMILY SSF46955 5 116 1.51E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 SMART SM00422 127 195 3.4E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 SMART SM00422 5 70 9.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 SUPERFAMILY SSF46955 127 214 2.45E-17 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 Pfam PF00376 MerR family regulatory protein 7 43 5.4E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 Pfam PF13411 MerR HTH family regulatory protein 130 194 4.6E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 Gene3D G3DSA:1.10.1660.10 123 249 8.0E-20 T 13-10-2018 CLM_0834 c93ec4e3d5ea1f3ad544255ea1eabb58 254 Gene3D G3DSA:1.10.1660.10 1 122 1.4E-19 T 13-10-2018 CLM_3074 866920aa9be8bff1f7afb75b4fdc9699 482 Gene3D G3DSA:3.20.20.370 187 481 1.8E-14 T 13-10-2018 CLM_3076 d30eeac2aae2b9ac5b6bf9cb1e3c381e 437 Pfam PF13480 Acetyltransferase (GNAT) domain 280 394 5.7E-6 T 13-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 CLM_3076 d30eeac2aae2b9ac5b6bf9cb1e3c381e 437 Gene3D G3DSA:3.40.50.720 18 126 4.1E-8 T 13-10-2018 CLM_3076 d30eeac2aae2b9ac5b6bf9cb1e3c381e 437 SUPERFAMILY SSF53335 8 147 6.98E-7 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3076 d30eeac2aae2b9ac5b6bf9cb1e3c381e 437 Gene3D G3DSA:3.40.630.30 236 428 7.6E-12 T 13-10-2018 CLM_3076 d30eeac2aae2b9ac5b6bf9cb1e3c381e 437 SUPERFAMILY SSF55729 273 432 2.22E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1812 e031778c909ddfb630673c15f260df34 354 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 CLM_1812 e031778c909ddfb630673c15f260df34 354 SUPERFAMILY SSF53383 5 350 1.58E-76 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1812 e031778c909ddfb630673c15f260df34 354 Gene3D G3DSA:3.90.1150.10 21 341 1.1E-105 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1812 e031778c909ddfb630673c15f260df34 354 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 10 350 1.6E-96 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CLM_1812 e031778c909ddfb630673c15f260df34 354 Pfam PF00155 Aminotransferase class I and II 25 347 1.0E-54 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1812 e031778c909ddfb630673c15f260df34 354 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 351 56.182 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CLM_1812 e031778c909ddfb630673c15f260df34 354 Gene3D G3DSA:3.40.640.10 38 259 1.1E-105 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0959 2c970d129247500176b82ee943ef3ccf 507 Pfam PF07670 Nucleoside recognition 181 270 8.9E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_0959 2c970d129247500176b82ee943ef3ccf 507 Pfam PF07670 Nucleoside recognition 353 477 3.0E-15 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_0959 2c970d129247500176b82ee943ef3ccf 507 Pfam PF07664 Ferrous iron transport protein B C terminus 295 343 8.4E-15 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Gene3D G3DSA:1.10.8.60 507 574 1.1E-19 T 13-10-2018 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 SUPERFAMILY SSF46689 549 642 2.83E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 SMART SM00091 209 276 0.0045 T 13-10-2018 IPR000014 PAS domain CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Gene3D G3DSA:1.10.10.60 599 642 2.8E-16 T 13-10-2018 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 422 437 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 SUPERFAMILY SSF55785 201 311 2.28E-9 T 13-10-2018 IPR035965 PAS domain superfamily CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 SUPERFAMILY SSF52540 335 577 1.38E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 359 372 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 SUPERFAMILY SSF55781 62 202 1.24E-5 T 13-10-2018 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Pfam PF00158 Sigma-54 interaction domain 335 503 5.7E-67 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 549 558 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Pfam PF02954 Bacterial regulatory protein, Fis family 600 640 1.0E-15 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Gene3D G3DSA:3.40.50.300 325 506 7.8E-63 T 13-10-2018 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Gene3D G3DSA:3.30.450.40 17 203 4.9E-61 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 SMART SM00382 355 499 4.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 Gene3D G3DSA:3.30.450.20 219 324 1.4E-15 T 13-10-2018 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 623 643 1.0E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1887 a4ce6f75ad7257fb6139ceb97f73031f 654 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 606 623 1.0E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 61 79 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 SMART SM00418 38 116 8.3E-35 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 Gene3D G3DSA:1.10.10.10 4 121 1.1E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 SUPERFAMILY SSF46785 25 117 9.4E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 Pfam PF01022 Bacterial regulatory protein, arsR family 46 90 1.2E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 70 2.3E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 72 87 2.3E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 87 102 2.3E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0560 cf952ebf3e967774129c3ae01bc81552 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 2.3E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_3535 0015f6e59e8916b17208fd7a4fa48ee3 152 SUPERFAMILY SSF53448 1 137 1.2E-20 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3535 0015f6e59e8916b17208fd7a4fa48ee3 152 Gene3D G3DSA:3.90.550.10 1 147 1.9E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3535 0015f6e59e8916b17208fd7a4fa48ee3 152 Pfam PF00535 Glycosyl transferase family 2 1 99 4.5E-16 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_1537 f8663c80fd0e78ee661be6f5758b1217 217 SUPERFAMILY SSF52540 1 201 3.59E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1537 f8663c80fd0e78ee661be6f5758b1217 217 SMART SM00382 28 204 1.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1537 f8663c80fd0e78ee661be6f5758b1217 217 Gene3D G3DSA:3.40.50.300 1 217 7.2E-54 T 13-10-2018 CLM_1537 f8663c80fd0e78ee661be6f5758b1217 217 ProSitePatterns PS00211 ABC transporters family signature. 124 138 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1537 f8663c80fd0e78ee661be6f5758b1217 217 Pfam PF00005 ABC transporter 19 151 1.3E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Pfam PF03454 MoeA C-terminal region (domain IV) 324 394 2.5E-16 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 171 307 2.5E-30 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Gene3D G3DSA:3.40.980.10 169 310 1.3E-78 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Gene3D G3DSA:3.40.190.10 487 566 3.2E-6 T 13-10-2018 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 247 280 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Pfam PF12727 PBP superfamily domain 423 608 7.7E-62 T 13-10-2018 IPR024370 PBP domain CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 SUPERFAMILY SSF53218 172 314 1.44E-38 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 SUPERFAMILY SSF63882 11 169 2.88E-35 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 SUPERFAMILY SSF63867 321 395 8.37E-16 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Pfam PF00994 Probable molybdopterin binding domain 174 310 1.8E-24 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Gene3D G3DSA:2.40.340.10 321 396 6.7E-20 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Gene3D G3DSA:3.90.105.10 35 168 1.3E-78 T 13-10-2018 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Pfam PF03453 MoeA N-terminal region (domain I and II) 12 160 1.0E-27 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 SUPERFAMILY SSF53850 424 623 1.06E-11 T 13-10-2018 CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 SMART SM00852 174 311 5.0E-36 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2158 1e56e41620f64880a7a9ba8faa545396 634 Gene3D G3DSA:2.170.190.11 53 135 1.3E-78 T 13-10-2018 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 SUPERFAMILY SSF52518 5 258 1.68E-79 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 269 374 2.2E-16 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 959 1069 3.0E-9 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 5 1171 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Gene3D G3DSA:3.40.50.970 2 258 7.1E-111 T 13-10-2018 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Gene3D G3DSA:3.40.50.970 786 1172 1.3E-174 T 13-10-2018 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 17 247 8.1E-81 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Gene3D G3DSA:3.40.920.10 415 625 5.9E-94 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 SUPERFAMILY SSF54862 665 832 1.36E-21 T 13-10-2018 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 SUPERFAMILY SSF52518 787 1170 1.3E-135 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 425 608 5.1E-32 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 SUPERFAMILY SSF53323 415 668 1.7E-89 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Pfam PF12838 4Fe-4S dicluster domain 688 757 1.2E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 SUPERFAMILY SSF52922 259 414 1.26E-48 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Gene3D G3DSA:3.30.70.20 669 785 2.7E-43 T 13-10-2018 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 SMART SM00890 621 679 2.1E-31 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Gene3D G3DSA:4.10.780.10 629 668 1.2E-6 T 13-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Pfam PF10371 Domain of unknown function 625 678 4.4E-24 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 Gene3D G3DSA:3.40.50.920 259 413 1.2E-57 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_1345 7fbb3df81ab2d3bd0b8e3121d8ddbac2 1172 PIRSF PIRSF000159 1 1172 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 CLM_3233 4b354bc5ad58d151be9a7bc29a674db6 151 SMART SM00644 5 132 9.5E-12 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CLM_3233 4b354bc5ad58d151be9a7bc29a674db6 151 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 132 5.8E-23 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CLM_3233 4b354bc5ad58d151be9a7bc29a674db6 151 Gene3D G3DSA:3.40.80.10 9 148 9.8E-42 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CLM_3233 4b354bc5ad58d151be9a7bc29a674db6 151 SMART SM00701 6 126 4.9E-6 T 13-10-2018 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CLM_3233 4b354bc5ad58d151be9a7bc29a674db6 151 SUPERFAMILY SSF55846 15 135 3.14E-40 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 Gene3D G3DSA:1.20.58.1830 3 31 7.5E-68 T 13-10-2018 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 4.2E-41 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 PRINTS PR00207 Flagellin signature 35 52 3.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 PRINTS PR00207 Flagellin signature 109 132 3.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 PRINTS PR00207 Flagellin signature 74 93 3.1E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 Pfam PF00700 Bacterial flagellin C-terminal helical region 190 274 1.8E-30 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 Gene3D G3DSA:1.20.1330.10 43 179 7.5E-68 T 13-10-2018 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 Gene3D G3DSA:1.10.8.410 222 275 5.8E-29 T 13-10-2018 CLM_3096 21dfe595895fea862aff8e92cf6966a5 275 SUPERFAMILY SSF64518 1 275 8.24E-93 T 13-10-2018 CLM_1909 c0471bf014dcffb1814534047dc0016c 93 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 92 1.4E-30 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain CLM_1909 c0471bf014dcffb1814534047dc0016c 93 Gene3D G3DSA:2.40.30.70 1 93 6.7E-36 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily CLM_1909 c0471bf014dcffb1814534047dc0016c 93 SUPERFAMILY SSF118196 2 91 3.01E-36 T 13-10-2018 IPR036413 YaeB-like superfamily CLM_1909 c0471bf014dcffb1814534047dc0016c 93 ProSitePatterns PS01318 TsaA-like domain signature. 40 51 - T 13-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site CLM_1909 c0471bf014dcffb1814534047dc0016c 93 Pfam PF01980 Uncharacterised protein family UPF0066 3 90 3.0E-32 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 SUPERFAMILY SSF88946 5 94 3.66E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 179 9.4E-20 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 Gene3D G3DSA:1.10.10.10 106 181 3.3E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 Pfam PF04542 Sigma-70 region 2 27 91 3.4E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 Gene3D G3DSA:1.10.1740.10 4 90 2.6E-11 T 13-10-2018 CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 Pfam PF08281 Sigma-70, region 4 124 174 8.4E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_1867 bb527ee7e81455786b1516ff3394d3a1 190 SUPERFAMILY SSF88659 112 180 5.42E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_0120 47db5fa9edd4f5c31e13910e60438f3c 501 Pfam PF04286 Protein of unknown function (DUF445) 8 501 8.1E-65 T 13-10-2018 IPR007383 Protein of unknown function DUF445 CLM_1228 e8e7470f59d93dbafc0042a14399d3db 472 Gene3D G3DSA:3.50.50.60 3 349 4.2E-124 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1228 e8e7470f59d93dbafc0042a14399d3db 472 Pfam PF04324 BFD-like [2Fe-2S] binding domain 398 452 2.6E-18 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_1228 e8e7470f59d93dbafc0042a14399d3db 472 Gene3D G3DSA:1.10.10.1100 384 461 1.6E-24 T 13-10-2018 CLM_1228 e8e7470f59d93dbafc0042a14399d3db 472 SUPERFAMILY SSF51905 1 406 3.45E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1228 e8e7470f59d93dbafc0042a14399d3db 472 Gene3D G3DSA:3.30.9.10 86 315 4.2E-124 T 13-10-2018 CLM_1228 e8e7470f59d93dbafc0042a14399d3db 472 Pfam PF01266 FAD dependent oxidoreductase 3 354 9.2E-65 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CLM_1340 f701d41c23f93b48db4bde1116a6416c 447 SUPERFAMILY SSF55874 311 429 1.44E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1340 f701d41c23f93b48db4bde1116a6416c 447 Gene3D G3DSA:3.30.565.10 295 446 5.0E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1340 f701d41c23f93b48db4bde1116a6416c 447 Pfam PF14501 GHKL domain 340 444 1.1E-15 T 13-10-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 SUPERFAMILY SSF46894 129 224 1.7E-29 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 Pfam PF00072 Response regulator receiver domain 4 113 7.0E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 SMART SM00448 2 112 3.8E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 224 4.7E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 SUPERFAMILY SSF52172 3 118 1.42E-36 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 Gene3D G3DSA:3.40.50.2300 1 121 2.8E-32 T 13-10-2018 CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 SMART SM00862 148 224 4.0E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1191 906b733fae0a4f6af26cd4cecb162dfa 228 Gene3D G3DSA:1.10.10.10 123 228 5.3E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 SUPERFAMILY SSF51569 1 211 4.92E-85 T 13-10-2018 CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 1 212 35.949 T 13-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 SMART SM01133 2 212 1.2E-99 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 3 211 1.5E-90 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 Pfam PF01791 DeoC/LacD family aldolase 5 207 7.3E-23 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 Gene3D G3DSA:3.20.20.70 1 212 3.9E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1804 a57b430f5b8579fd366d79e432e0f7f1 212 PIRSF PIRSF001357 1 212 2.3E-78 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 Gene3D G3DSA:3.20.20.80 272 478 1.5E-47 T 13-10-2018 CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 SUPERFAMILY SSF47090 207 269 2.25E-13 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 Gene3D G3DSA:1.10.101.10 204 271 5.2E-10 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 SUPERFAMILY SSF51445 276 455 9.69E-36 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 Gene3D G3DSA:1.10.101.10 135 202 1.2E-6 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 SUPERFAMILY SSF47090 71 128 1.65E-5 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 Pfam PF01471 Putative peptidoglycan binding domain 213 265 9.6E-10 T 13-10-2018 IPR002477 Peptidoglycan binding-like CLM_0674 d57f8d2ba7d4e42f15f00187e73ea98e 695 Pfam PF08924 Domain of unknown function (DUF1906) 289 408 2.5E-30 T 13-10-2018 IPR015020 Protein of unknown function DUF1906 CLM_2834 3c948a48cc1c2703ab15fc67592d229a 151 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 2.2E-59 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CLM_2834 3c948a48cc1c2703ab15fc67592d229a 151 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 151 81.374 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CLM_2834 3c948a48cc1c2703ab15fc67592d229a 151 Pfam PF03477 ATP cone domain 50 136 5.1E-19 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CLM_1659 0d395f686e6f4cd58a25f12772ed2224 391 Pfam PF05065 Phage capsid family 120 369 5.9E-18 T 13-10-2018 IPR024455 Phage capsid CLM_1659 0d395f686e6f4cd58a25f12772ed2224 391 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 6 374 2.1E-51 T 13-10-2018 IPR024455 Phage capsid CLM_1659 0d395f686e6f4cd58a25f12772ed2224 391 SUPERFAMILY SSF56563 113 376 2.35E-28 T 13-10-2018 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 Gene3D G3DSA:3.30.360.10 127 233 6.0E-89 T 13-10-2018 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 SUPERFAMILY SSF55347 129 234 1.57E-27 T 13-10-2018 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 264 28.9 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 PIRSF PIRSF000161 1 265 3.0E-72 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 129 263 4.7E-36 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 Gene3D G3DSA:3.40.50.720 2 263 6.0E-89 T 13-10-2018 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 124 1.8E-35 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 264 5.3E-76 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_0942 73b77e2d0ebf71353930a4fd2e6d15f6 265 SUPERFAMILY SSF51735 1 265 2.63E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2377 295e422c0302885e531fac98870d90c9 265 Pfam PF13411 MerR HTH family regulatory protein 3 64 6.3E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2377 295e422c0302885e531fac98870d90c9 265 Gene3D G3DSA:1.10.1660.10 1 131 9.4E-15 T 13-10-2018 CLM_2377 295e422c0302885e531fac98870d90c9 265 SUPERFAMILY SSF46955 3 82 1.56E-12 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_2377 295e422c0302885e531fac98870d90c9 265 SMART SM00422 3 71 1.8E-4 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_3639 cc7953301e37124aecb67152e816faab 194 SUPERFAMILY SSF52540 3 192 5.48E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3639 cc7953301e37124aecb67152e816faab 194 Gene3D G3DSA:3.40.50.300 1 193 1.1E-57 T 13-10-2018 CLM_3639 cc7953301e37124aecb67152e816faab 194 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 8 191 7.6E-76 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CLM_3639 cc7953301e37124aecb67152e816faab 194 Pfam PF01926 50S ribosome-binding GTPase 27 142 3.0E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3639 cc7953301e37124aecb67152e816faab 194 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 13 192 28.113 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CLM_3517 ad1c53170ade1196749a0fb4dd3b1dec 864 Gene3D G3DSA:3.40.630.40 680 862 2.0E-62 T 13-10-2018 CLM_3517 ad1c53170ade1196749a0fb4dd3b1dec 864 SUPERFAMILY SSF117281 190 534 8.11E-9 T 13-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 CLM_3517 ad1c53170ade1196749a0fb4dd3b1dec 864 Gene3D G3DSA:2.60.40.10 33 140 2.0E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_3517 ad1c53170ade1196749a0fb4dd3b1dec 864 SMART SM00646 750 859 1.1E-43 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3517 ad1c53170ade1196749a0fb4dd3b1dec 864 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 684 859 7.3E-56 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3517 ad1c53170ade1196749a0fb4dd3b1dec 864 SUPERFAMILY SSF53187 682 860 1.1E-59 T 13-10-2018 CLM_1008 0baf4ddbe1edca32ea45ccf77281842a 156 Pfam PF12821 Threonine/Serine exporter, ThrE 7 135 2.8E-33 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE CLM_3083 0ed467ad607b54906de5be730f303db3 323 Pfam PF04055 Radical SAM superfamily 23 158 2.5E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3083 0ed467ad607b54906de5be730f303db3 323 SUPERFAMILY SSF102114 15 296 1.31E-41 T 13-10-2018 CLM_3083 0ed467ad607b54906de5be730f303db3 323 Pfam PF13186 Iron-sulfur cluster-binding domain 229 296 3.9E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_0258 46b43627cecd5d4b6fcd15933ecbfa3f 233 Pfam PF01553 Acyltransferase 36 162 2.1E-22 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CLM_0258 46b43627cecd5d4b6fcd15933ecbfa3f 233 SMART SM00563 51 164 2.3E-25 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CLM_0258 46b43627cecd5d4b6fcd15933ecbfa3f 233 SUPERFAMILY SSF69593 19 232 3.4E-47 T 13-10-2018 CLM_1264 6d4fb04bc26ec8cb363917ba0b2fce22 412 Gene3D G3DSA:3.40.190.10 169 338 4.8E-8 T 13-10-2018 CLM_1264 6d4fb04bc26ec8cb363917ba0b2fce22 412 SUPERFAMILY SSF53850 46 365 4.69E-36 T 13-10-2018 CLM_1264 6d4fb04bc26ec8cb363917ba0b2fce22 412 PIRSF PIRSF029172 1 411 5.7E-180 T 13-10-2018 IPR027020 Protein ynjB CLM_1264 6d4fb04bc26ec8cb363917ba0b2fce22 412 Gene3D G3DSA:3.40.190.10 45 168 3.3E-9 T 13-10-2018 CLM_1264 6d4fb04bc26ec8cb363917ba0b2fce22 412 Pfam PF13416 Bacterial extracellular solute-binding protein 68 366 5.6E-35 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CLM_0321 30924a52c6778e42de0311b3ee53ab40 227 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 7 215 6.6E-58 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Gene3D G3DSA:3.30.1490.450 32 120 3.7E-8 T 13-10-2018 CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Gene3D G3DSA:1.10.10.2290 282 358 4.6E-33 T 13-10-2018 CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Gene3D G3DSA:3.40.50.11790 209 388 4.6E-33 T 13-10-2018 CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 204 360 6.9E-37 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Pfam PF17482 Phage tail sheath C-terminal domain 367 467 4.0E-24 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 ProDom PD032508 PHAGE-LIKE PBSX XKDK ELEMENT PHAGE LIN1278 SHEATH YQBL RELATED TAIL 359 442 0.006 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Pfam PF17481 Phage tail sheath protein beta-sandwich domain 95 199 1.5E-10 T 13-10-2018 IPR035326 Phage tail sheath protein, beta-sandwich domain CLM_2516 2ac597ea354d98abfc8b3825676ef5d6 468 Gene3D G3DSA:3.30.360.90 395 467 6.3E-8 T 13-10-2018 CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 Gene3D G3DSA:3.30.1240.10 83 197 1.2E-65 T 13-10-2018 CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 269 9.1E-60 T 13-10-2018 IPR000150 Cof family GO:0016787 CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 SUPERFAMILY SSF56784 2 273 6.99E-66 T 13-10-2018 IPR036412 HAD-like superfamily CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 13-10-2018 CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 Gene3D G3DSA:3.40.50.1000 6 269 1.2E-65 T 13-10-2018 IPR023214 HAD superfamily CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 241 3.7E-26 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CLM_2906 bac93768e7c26b79f9d66da411dd5f72 274 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 269 8.4E-62 T 13-10-2018 CLM_2333 d77fa1ee4f581ff605153ae08d0d92cf 380 Gene3D G3DSA:1.20.1090.10 168 379 4.5E-61 T 13-10-2018 CLM_2333 d77fa1ee4f581ff605153ae08d0d92cf 380 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 156 184 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_2333 d77fa1ee4f581ff605153ae08d0d92cf 380 Gene3D G3DSA:3.40.50.1970 1 167 3.1E-45 T 13-10-2018 CLM_2333 d77fa1ee4f581ff605153ae08d0d92cf 380 SUPERFAMILY SSF56796 3 377 6.8E-107 T 13-10-2018 CLM_2333 d77fa1ee4f581ff605153ae08d0d92cf 380 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 371 9.9E-109 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 5 319 1.5E-111 T 13-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 Gene3D G3DSA:3.30.390.50 243 329 2.2E-26 T 13-10-2018 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 Gene3D G3DSA:3.30.930.10 1 242 4.5E-84 T 13-10-2018 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 SUPERFAMILY SSF55681 1 242 1.07E-81 T 13-10-2018 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 244 327 5.4E-25 T 13-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 SUPERFAMILY SSF82649 244 329 3.4E-23 T 13-10-2018 CLM_1876 ecf680d64c6fdc4497d42fc2e7736aea 331 Pfam PF03099 Biotin/lipoate A/B protein ligase family 46 150 1.1E-10 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CLM_2251 fd3f77c4fd1b5567ea0ff1e369824960 155 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 5 146 2.1E-27 T 13-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CLM_2251 fd3f77c4fd1b5567ea0ff1e369824960 155 Gene3D G3DSA:3.30.1330.40 1 151 4.7E-59 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_2251 fd3f77c4fd1b5567ea0ff1e369824960 155 SUPERFAMILY SSF55298 1 151 1.34E-54 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_3460 6271106628625f43b28a885f02d9260a 415 Pfam PF13393 Histidyl-tRNA synthetase 8 306 3.8E-47 T 13-10-2018 CLM_3460 6271106628625f43b28a885f02d9260a 415 Pfam PF03129 Anticodon binding domain 333 412 3.2E-13 T 13-10-2018 IPR004154 Anticodon-binding CLM_3460 6271106628625f43b28a885f02d9260a 415 Gene3D G3DSA:3.40.50.800 319 411 7.1E-24 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CLM_3460 6271106628625f43b28a885f02d9260a 415 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 403 4.8E-153 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CLM_3460 6271106628625f43b28a885f02d9260a 415 PIRSF PIRSF001549 1 413 1.4E-122 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CLM_3460 6271106628625f43b28a885f02d9260a 415 SUPERFAMILY SSF55681 4 312 2.99E-96 T 13-10-2018 CLM_3460 6271106628625f43b28a885f02d9260a 415 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 413 33.019 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CLM_3460 6271106628625f43b28a885f02d9260a 415 SUPERFAMILY SSF52954 322 411 3.93E-22 T 13-10-2018 CLM_3460 6271106628625f43b28a885f02d9260a 415 Gene3D G3DSA:3.30.930.10 1 318 3.3E-113 T 13-10-2018 CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 SUPERFAMILY SSF56601 232 717 3.22E-98 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 Gene3D G3DSA:3.40.710.10 327 655 9.3E-176 T 13-10-2018 CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 Gene3D G3DSA:1.10.3810.10 75 278 9.3E-176 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 Gene3D G3DSA:3.90.1310.20 59 556 9.3E-176 T 13-10-2018 CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 75 645 1.8E-166 T 13-10-2018 CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 SUPERFAMILY SSF53955 53 264 3.09E-65 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 Pfam PF00905 Penicillin binding protein transpeptidase domain 358 619 3.3E-26 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CLM_3488 6a05bf3ebb13bd7b1ca6147dc26d1ef0 831 Pfam PF00912 Transglycosylase 67 248 4.4E-57 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_0089 3e3f91a4e096917d837c484f0dc20c3e 247 SUPERFAMILY SSF52467 3 246 1.33E-84 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_0089 3e3f91a4e096917d837c484f0dc20c3e 247 Hamap MF_01968 NAD-dependent protein deacetylase [cobB]. 5 244 63.429 T 13-10-2018 IPR028628 Sirtuin, class U GO:0034979|GO:0051287 CLM_0089 3e3f91a4e096917d837c484f0dc20c3e 247 Pfam PF02146 Sir2 family 21 201 4.6E-52 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 CLM_0089 3e3f91a4e096917d837c484f0dc20c3e 247 Gene3D G3DSA:3.30.1600.10 30 171 7.1E-78 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily CLM_0089 3e3f91a4e096917d837c484f0dc20c3e 247 Gene3D G3DSA:3.40.50.1220 12 242 7.1E-78 T 13-10-2018 CLM_0666 3c1812593c510313983aa8c1e2d4426a 319 Gene3D G3DSA:1.10.3720.10 43 310 3.8E-56 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0666 3c1812593c510313983aa8c1e2d4426a 319 SUPERFAMILY SSF161098 44 307 2.43E-56 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0666 3c1812593c510313983aa8c1e2d4426a 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 304 8.1E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_3843 1a28476164d8c4657b3fdbe25eb3806a 202 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 191 9.5E-38 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 PRINTS PR00315 GTP-binding elongation factor signature 63 71 1.4E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.4E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.4E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 PRINTS PR00315 GTP-binding elongation factor signature 13 26 1.4E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.4E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 386 514 6.7E-49 T 13-10-2018 IPR032090 Peptide chain release factor 3, C-terminal CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 SUPERFAMILY SSF54980 392 465 9.35E-14 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 SUPERFAMILY SSF52540 8 273 6.79E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Gene3D G3DSA:3.30.70.3280 389 528 1.6E-45 T 13-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 2 526 1.3E-210 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 146 4.1E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 SUPERFAMILY SSF50447 259 386 1.48E-27 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Pfam PF00009 Elongation factor Tu GTP binding domain 11 274 1.3E-51 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Gene3D G3DSA:3.40.50.300 70 377 4.1E-104 T 13-10-2018 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Pfam PF03144 Elongation factor Tu domain 2 312 378 1.0E-8 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 527 50.067 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_3765 8c6468277c13eaec7caafed13cc2d983 529 Gene3D G3DSA:3.40.50.300 108 273 4.1E-104 T 13-10-2018 CLM_0510 c30fe22a880de8e2f01b2f12f13bb950 202 SUPERFAMILY SSF46689 7 64 2.82E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0510 c30fe22a880de8e2f01b2f12f13bb950 202 Gene3D G3DSA:1.10.357.10 6 192 1.5E-36 T 13-10-2018 CLM_0510 c30fe22a880de8e2f01b2f12f13bb950 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 1.7E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0510 c30fe22a880de8e2f01b2f12f13bb950 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 4.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0510 c30fe22a880de8e2f01b2f12f13bb950 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 4.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0510 c30fe22a880de8e2f01b2f12f13bb950 202 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_1208 b7b77913cf5fd103b872ac080a8a3e08 457 SUPERFAMILY SSF55874 318 446 2.26E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1208 b7b77913cf5fd103b872ac080a8a3e08 457 Gene3D G3DSA:3.30.565.10 305 456 5.2E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1208 b7b77913cf5fd103b872ac080a8a3e08 457 Pfam PF14501 GHKL domain 350 454 1.6E-24 T 13-10-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain CLM_0541 24d6f7d6f9412af41ed58f2f3772d260 258 Pfam PF02596 Uncharacterised ArCR, COG2043 10 216 9.0E-49 T 13-10-2018 IPR003748 Protein of unknown function DUF169 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Gene3D G3DSA:3.40.50.11270 12 98 3.7E-95 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Pfam PF02401 LytB protein 3 275 4.3E-91 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SUPERFAMILY SSF50249 288 397 2.93E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 276 3.0E-96 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Pfam PF00575 S1 RNA binding domain 476 547 3.0E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Pfam PF00575 S1 RNA binding domain 561 633 1.6E-20 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Pfam PF00575 S1 RNA binding domain 302 372 2.4E-11 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Gene3D G3DSA:2.40.50.140 289 385 3.1E-20 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SUPERFAMILY SSF50249 547 635 9.81E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SUPERFAMILY SSF50249 477 564 4.1E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Gene3D G3DSA:2.40.50.140 559 638 8.9E-26 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Gene3D G3DSA:2.40.50.140 474 557 9.9E-29 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 279 32.398 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SMART SM00316 301 372 4.8E-16 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SMART SM00316 388 458 0.33 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SMART SM00316 477 547 3.9E-28 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SMART SM00316 562 633 5.9E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 411 428 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 577 596 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 616 634 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 321 335 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 369 388 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 303 321 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 PRINTS PR00681 Ribosomal protein S1 signature 499 520 2.5E-38 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 SUPERFAMILY SSF50249 379 458 3.63E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Gene3D G3DSA:3.40.1010.20 3 275 3.7E-95 T 13-10-2018 CLM_1964 e8c6136c465f9cd3fb05254c7b357c67 638 Gene3D G3DSA:3.40.1010.20 99 189 3.7E-95 T 13-10-2018 CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 SUPERFAMILY SSF54631 71 208 3.54E-23 T 13-10-2018 CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 Pfam PF00571 CBS domain 80 132 3.3E-5 T 13-10-2018 IPR000644 CBS domain CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 Pfam PF00571 CBS domain 146 205 9.5E-5 T 13-10-2018 IPR000644 CBS domain CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 SUPERFAMILY SSF46785 5 81 4.22E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 Pfam PF08279 HTH domain 9 61 7.4E-11 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 SMART SM00116 86 133 0.68 T 13-10-2018 IPR000644 CBS domain CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 SMART SM00116 152 207 0.0038 T 13-10-2018 IPR000644 CBS domain CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 Gene3D G3DSA:3.10.580.10 64 213 6.3E-48 T 13-10-2018 CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 PIRSF PIRSF026546 4 213 1.2E-94 T 13-10-2018 IPR016842 Protein of unknown function UCP026546, HtH-CBS CLM_3337 305982d35c87902ac95ecfc2c6b3002e 213 Gene3D G3DSA:1.10.10.10 1 63 5.4E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0575 b72a4e23cb936991ee8731a1010eb23e 452 Gene3D G3DSA:1.10.490.140 83 421 3.5E-16 T 13-10-2018 CLM_0575 b72a4e23cb936991ee8731a1010eb23e 452 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 68 421 5.3E-51 T 13-10-2018 IPR003776 YcaO-like domain CLM_0575 b72a4e23cb936991ee8731a1010eb23e 452 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 69 452 1.3E-110 T 13-10-2018 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component CLM_0575 b72a4e23cb936991ee8731a1010eb23e 452 Gene3D G3DSA:3.30.160.660 228 370 3.5E-16 T 13-10-2018 CLM_0575 b72a4e23cb936991ee8731a1010eb23e 452 Gene3D G3DSA:2.40.50.820 101 193 3.5E-16 T 13-10-2018 CLM_2701 30cb66de98d4d249ee47c970d68695d1 230 SUPERFAMILY SSF52096 28 215 6.26E-38 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_2701 30cb66de98d4d249ee47c970d68695d1 230 Pfam PF00574 Clp protease 38 207 8.6E-29 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_2701 30cb66de98d4d249ee47c970d68695d1 230 Gene3D G3DSA:3.90.226.10 35 210 3.3E-32 T 13-10-2018 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 Gene3D G3DSA:3.40.605.10 13 443 1.2E-175 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 SUPERFAMILY SSF56796 446 858 1.44E-125 T 13-10-2018 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 Pfam PF00465 Iron-containing alcohol dehydrogenase 455 847 6.1E-117 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 SUPERFAMILY SSF53720 6 451 8.38E-78 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 Gene3D G3DSA:1.20.1090.10 643 859 6.5E-68 T 13-10-2018 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 630 658 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 Pfam PF00171 Aldehyde dehydrogenase family 5 398 4.9E-23 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 Gene3D G3DSA:3.40.309.10 216 402 1.2E-175 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 PIRSF PIRSF000111 1 862 0.0 T 13-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 718 738 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_0413 a9c22d75474c85eb9435d9b5ebcd0615 862 Gene3D G3DSA:3.40.50.1970 448 641 2.2E-58 T 13-10-2018 CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 Pfam PF01799 [2Fe-2S] binding domain 77 149 4.1E-27 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 43 51 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 56 1.0E-6 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 Gene3D G3DSA:1.10.150.120 79 157 1.6E-28 T 13-10-2018 CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 SUPERFAMILY SSF54292 5 82 1.31E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 Gene3D G3DSA:3.10.20.30 3 78 3.5E-29 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_1446 5dc1999565bb58ac7c23414bfe28fb1c 157 SUPERFAMILY SSF47741 88 153 1.7E-26 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily CLM_2619 c063a6179a27bc5f0f4b8ea317a5476b 104 Pfam PF02517 CAAX protease self-immunity 29 101 3.4E-16 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_1807 8162922957f06b9103498ba948b0c2de 212 Gene3D G3DSA:3.40.190.10 96 179 2.8E-76 T 13-10-2018 CLM_1807 8162922957f06b9103498ba948b0c2de 212 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 4 187 1.2E-62 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CLM_1807 8162922957f06b9103498ba948b0c2de 212 Gene3D G3DSA:3.40.190.10 6 201 2.8E-76 T 13-10-2018 CLM_1807 8162922957f06b9103498ba948b0c2de 212 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 146 167 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 CLM_1807 8162922957f06b9103498ba948b0c2de 212 SUPERFAMILY SSF53850 3 210 1.34E-66 T 13-10-2018 CLM_1807 8162922957f06b9103498ba948b0c2de 212 Pfam PF01634 ATP phosphoribosyltransferase 55 206 8.6E-54 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CLM_1807 8162922957f06b9103498ba948b0c2de 212 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 3 211 56.477 T 13-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 CLM_1579 207440670aec4997ab7e653c0858811b 245 PIRSF PIRSF039085 1 244 4.8E-109 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CLM_1579 207440670aec4997ab7e653c0858811b 245 SUPERFAMILY SSF52540 1 237 1.22E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1579 207440670aec4997ab7e653c0858811b 245 Gene3D G3DSA:3.40.50.300 1 245 1.6E-76 T 13-10-2018 CLM_1579 207440670aec4997ab7e653c0858811b 245 SMART SM00382 26 216 9.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1579 207440670aec4997ab7e653c0858811b 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1579 207440670aec4997ab7e653c0858811b 245 Pfam PF00005 ABC transporter 17 168 5.3E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2788 0fa570ec03fa37f543fd216f0c947081 436 TIGRFAM TIGR04481 PR_assoc_PrdC: proline reductase-associated electron transfer protein PrdC 5 429 3.1E-199 T 13-10-2018 IPR031001 Proline reductase-associated electron transfer protein PrdC CLM_2788 0fa570ec03fa37f543fd216f0c947081 436 SUPERFAMILY SSF142019 62 245 1.44E-50 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2788 0fa570ec03fa37f543fd216f0c947081 436 Gene3D G3DSA:3.40.50.11540 89 234 2.9E-19 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2788 0fa570ec03fa37f543fd216f0c947081 436 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 84 227 1.7E-44 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2788 0fa570ec03fa37f543fd216f0c947081 436 Pfam PF13375 RnfC Barrel sandwich hybrid domain 7 59 4.8E-13 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CLM_3828 449adfc0e4eb7def8e32e98b8e84a5e8 135 Gene3D G3DSA:3.40.630.30 1 120 3.0E-20 T 13-10-2018 CLM_3828 449adfc0e4eb7def8e32e98b8e84a5e8 135 SUPERFAMILY SSF55729 2 134 1.33E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3828 449adfc0e4eb7def8e32e98b8e84a5e8 135 Pfam PF00583 Acetyltransferase (GNAT) family 11 112 1.4E-14 T 13-10-2018 IPR000182 GNAT domain CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Gene3D G3DSA:3.40.50.300 202 333 1.8E-40 T 13-10-2018 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 587 4.0E-233 T 13-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SMART SM00956 406 509 5.0E-44 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 456 2.8E-149 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Pfam PF14493 Helix-turn-helix domain 614 701 1.9E-25 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Gene3D G3DSA:3.40.50.300 1 201 1.2E-76 T 13-10-2018 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SUPERFAMILY SSF52540 58 345 3.38E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Gene3D G3DSA:1.10.150.80 514 594 9.2E-26 T 13-10-2018 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Gene3D G3DSA:1.10.10.10 334 513 1.3E-50 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SUPERFAMILY SSF46785 397 539 2.99E-37 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SMART SM00490 243 324 6.9E-28 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Pfam PF09382 RQC domain 402 512 8.1E-35 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Pfam PF00570 HRDC domain 518 584 1.1E-22 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SMART SM00487 14 211 3.5E-30 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Pfam PF00270 DEAD/DEAH box helicase 20 182 2.1E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Pfam PF00271 Helicase conserved C-terminal domain 218 323 6.3E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SMART SM00341 514 594 9.4E-17 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 SUPERFAMILY SSF47819 516 598 5.45E-24 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 CLM_1150 4d56434e260387368ba7fdb390cdc714 709 Pfam PF16124 RecQ zinc-binding 336 398 2.5E-16 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CLM_1518 123d6f8d952187c626093ebba3ea0423 425 Gene3D G3DSA:3.30.70.20 257 316 3.2E-7 T 13-10-2018 CLM_1518 123d6f8d952187c626093ebba3ea0423 425 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 294 305 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1518 123d6f8d952187c626093ebba3ea0423 425 SUPERFAMILY SSF54862 279 363 1.23E-20 T 13-10-2018 CLM_1518 123d6f8d952187c626093ebba3ea0423 425 PRINTS PR01868 ABC transporter family E signature 299 314 3.0E-5 T 13-10-2018 IPR013283 RLI1 Reactome: R-HSA-909733 CLM_1518 123d6f8d952187c626093ebba3ea0423 425 PRINTS PR01868 ABC transporter family E signature 328 352 3.0E-5 T 13-10-2018 IPR013283 RLI1 Reactome: R-HSA-909733 CLM_1518 123d6f8d952187c626093ebba3ea0423 425 Pfam PF12838 4Fe-4S dicluster domain 293 345 4.0E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1518 123d6f8d952187c626093ebba3ea0423 425 Gene3D G3DSA:3.30.70.20 317 390 1.1E-6 T 13-10-2018 CLM_3250 02294430057d9a78b28927c83913de61 83 SUPERFAMILY SSF47336 5 81 2.59E-7 T 13-10-2018 IPR036736 ACP-like superfamily CLM_3250 02294430057d9a78b28927c83913de61 83 TIGRFAM TIGR04069 ocin_ACP_rel: peptide maturation system acyl carrier-related protein 3 79 1.8E-33 T 13-10-2018 IPR023972 Conserved hypothetical protein CHP04069, acyl carrier-related CLM_3250 02294430057d9a78b28927c83913de61 83 Gene3D G3DSA:1.10.1200.10 2 83 2.7E-10 T 13-10-2018 IPR036736 ACP-like superfamily CLM_3321 9075abb3897bda6f1d3182133ff72842 114 Gene3D G3DSA:2.60.120.10 5 109 4.2E-38 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_3321 9075abb3897bda6f1d3182133ff72842 114 Pfam PF07883 Cupin domain 44 110 8.0E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_3321 9075abb3897bda6f1d3182133ff72842 114 SUPERFAMILY SSF51182 7 113 8.69E-27 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_0288 f6381cf1104e0e8e653c0fb9161a113c 258 Pfam PF08241 Methyltransferase domain 47 141 1.1E-13 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CLM_0288 f6381cf1104e0e8e653c0fb9161a113c 258 Gene3D G3DSA:3.40.50.150 3 258 5.4E-35 T 13-10-2018 CLM_0288 f6381cf1104e0e8e653c0fb9161a113c 258 SUPERFAMILY SSF53335 1 206 7.02E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0527 15b631ca34ca9b4fb89c0faea9309374 211 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 105 1.0E-28 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CLM_0527 15b631ca34ca9b4fb89c0faea9309374 211 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 209 2.9E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_0527 15b631ca34ca9b4fb89c0faea9309374 211 SUPERFAMILY SSF161098 11 201 2.49E-44 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0527 15b631ca34ca9b4fb89c0faea9309374 211 Gene3D G3DSA:1.10.3720.10 3 210 1.7E-54 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1443 2ee1fcbf7b183cd50641dc0079979265 98 SMART SM00679 21 52 0.0039 T 13-10-2018 IPR006603 PQ-loop repeat CLM_1443 2ee1fcbf7b183cd50641dc0079979265 98 Pfam PF04193 PQ loop repeat 8 65 7.8E-8 T 13-10-2018 IPR006603 PQ-loop repeat CLM_1443 2ee1fcbf7b183cd50641dc0079979265 98 Gene3D G3DSA:1.20.1280.290 5 94 8.5E-11 T 13-10-2018 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 SUPERFAMILY SSF55920 45 289 6.93E-75 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 Hamap MF_01974 Methionine aminopeptidase [map]. 45 291 34.593 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 SUPERFAMILY SSF103642 6 26 1.64E-7 T 13-10-2018 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 Gene3D G3DSA:3.10.450.50 1 22 3.0E-6 T 13-10-2018 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 46 290 2.7E-80 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 Pfam PF02810 SEC-C motif 7 23 8.8E-10 T 13-10-2018 IPR004027 SEC-C motif CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 202 214 1.4E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 109 122 1.4E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 233 245 1.4E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 132 148 1.4E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 Pfam PF00557 Metallopeptidase family M24 55 282 3.1E-48 T 13-10-2018 IPR000994 Peptidase M24 CLM_4069 bdfb44cd9f28975c806a419af26646c6 291 Gene3D G3DSA:3.90.230.10 23 291 2.4E-91 T 13-10-2018 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 PIRSF PIRSF000089 71 397 1.1E-100 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 SUPERFAMILY SSF54862 16 58 5.3E-5 T 13-10-2018 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 SUPERFAMILY SSF52402 72 267 8.37E-56 T 13-10-2018 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 SUPERFAMILY SSF52467 273 391 6.35E-44 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 Gene3D G3DSA:3.40.50.620 70 270 4.4E-72 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 SMART SM00893 74 260 4.0E-43 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 Pfam PF01012 Electron transfer flavoprotein domain 76 248 1.0E-43 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 Gene3D G3DSA:3.40.50.1220 271 398 6.8E-50 T 13-10-2018 CLM_1163 ef37af6c51dc422eef1ec00adaa9a152 400 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 274 355 1.8E-31 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CLM_2552 8d7172fa91dd27b7173c4d230bc2ae49 134 Pfam PF06356 Protein of unknown function (DUF1064) 28 130 3.1E-23 T 13-10-2018 IPR009414 Protein of unknown function DUF1064 CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 SUPERFAMILY SSF52518 1 203 4.39E-69 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 Gene3D G3DSA:3.40.50.920 193 323 1.3E-44 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 Pfam PF02780 Transketolase, C-terminal domain 193 315 9.3E-41 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 Pfam PF02779 Transketolase, pyrimidine binding domain 3 179 5.6E-50 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 SMART SM00861 4 179 1.9E-64 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 Gene3D G3DSA:3.40.50.970 1 192 6.5E-84 T 13-10-2018 CLM_1872 b7c38f6b5fe98a778fd0ef5b4d9a4171 323 SUPERFAMILY SSF52922 190 322 6.15E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_3947 8956f7ab82d711ef428093c729c5a726 206 SUPERFAMILY SSF52166 1 205 5.89E-81 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3947 8956f7ab82d711ef428093c729c5a726 206 Pfam PF00573 Ribosomal protein L4/L1 family 18 203 7.9E-72 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 CLM_3947 8956f7ab82d711ef428093c729c5a726 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 206 36.177 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3947 8956f7ab82d711ef428093c729c5a726 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 18 203 4.3E-81 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3947 8956f7ab82d711ef428093c729c5a726 206 Gene3D G3DSA:3.40.1370.10 3 206 1.4E-80 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 CLM_0275 0c3bcb4d9efd0f7d310f6584ff84eab2 343 SUPERFAMILY SSF100950 89 337 4.47E-68 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_0275 0c3bcb4d9efd0f7d310f6584ff84eab2 343 SUPERFAMILY SSF46785 19 84 1.5E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0275 0c3bcb4d9efd0f7d310f6584ff84eab2 343 Pfam PF04198 Putative sugar-binding domain 90 338 1.1E-64 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 CLM_0275 0c3bcb4d9efd0f7d310f6584ff84eab2 343 Gene3D G3DSA:1.10.10.10 16 91 1.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0275 0c3bcb4d9efd0f7d310f6584ff84eab2 343 Gene3D G3DSA:3.40.50.1360 92 338 9.1E-76 T 13-10-2018 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 PIRSF PIRSF006630 5 638 3.0E-170 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 SUPERFAMILY SSF52402 316 618 2.01E-74 T 13-10-2018 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 SUPERFAMILY SSF56317 9 286 3.01E-40 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CLM_0639 bd5b4808f6346a22370f19f815f11430 638 Pfam PF02540 NAD synthase 339 573 3.7E-31 T 13-10-2018 IPR022310 NAD/GMP synthase CLM_0639 bd5b4808f6346a22370f19f815f11430 638 Gene3D G3DSA:3.40.50.620 314 528 8.0E-70 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0639 bd5b4808f6346a22370f19f815f11430 638 TIGRFAM TIGR00552 nadE: NAD+ synthetase 341 507 3.6E-27 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 8 636 28.06 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 Pfam PF00795 Carbon-nitrogen hydrolase 19 272 2.3E-12 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 Gene3D G3DSA:1.10.10.1140 544 638 4.9E-41 T 13-10-2018 CLM_0639 bd5b4808f6346a22370f19f815f11430 638 Gene3D G3DSA:3.60.110.10 2 308 6.4E-70 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CLM_3082 1f0484e1ba464be81915ce5b0c630247 243 Pfam PF08889 WbqC-like protein family 8 222 1.2E-76 T 13-10-2018 IPR014985 WbqC-like protein family CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 15 89 2.1E-22 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 SMART SM00967 15 90 5.4E-22 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 Pfam PF00588 SpoU rRNA Methylase family 107 247 7.6E-40 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 Gene3D G3DSA:3.40.1280.10 88 254 1.1E-55 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 Gene3D G3DSA:3.30.1330.30 4 86 1.2E-14 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 SUPERFAMILY SSF55315 13 87 1.79E-17 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 14 253 7.8E-81 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 CLM_3969 4d274402fe97451ccb3fba5dcd676517 257 SUPERFAMILY SSF75217 78 254 1.5E-48 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CLM_1170 7a2f304b809422cc63eebcb7a1c3f90c 192 Pfam PF04199 Putative cyclase 3 130 2.7E-12 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_1170 7a2f304b809422cc63eebcb7a1c3f90c 192 SUPERFAMILY SSF102198 26 191 5.75E-33 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_1170 7a2f304b809422cc63eebcb7a1c3f90c 192 Gene3D G3DSA:3.50.30.50 2 191 7.9E-29 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_0002 03d57016926c8b708cc589f002ee9302 367 PIRSF PIRSF000804 1 365 7.7E-114 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CLM_0002 03d57016926c8b708cc589f002ee9302 367 SUPERFAMILY SSF55979 123 242 4.45E-27 T 13-10-2018 CLM_0002 03d57016926c8b708cc589f002ee9302 367 SUPERFAMILY SSF55979 1 117 3.34E-27 T 13-10-2018 CLM_0002 03d57016926c8b708cc589f002ee9302 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 243 363 1.1E-29 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 CLM_0002 03d57016926c8b708cc589f002ee9302 367 Gene3D G3DSA:3.10.150.10 1 240 7.5E-121 T 13-10-2018 CLM_0002 03d57016926c8b708cc589f002ee9302 367 Gene3D G3DSA:3.70.10.10 137 362 7.5E-121 T 13-10-2018 CLM_0002 03d57016926c8b708cc589f002ee9302 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 117 3.5E-30 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 CLM_0002 03d57016926c8b708cc589f002ee9302 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 239 6.8E-29 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 CLM_0002 03d57016926c8b708cc589f002ee9302 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 364 1.9E-95 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CLM_0002 03d57016926c8b708cc589f002ee9302 367 SMART SM00480 17 360 7.0E-114 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CLM_0002 03d57016926c8b708cc589f002ee9302 367 SUPERFAMILY SSF55979 244 364 2.51E-34 T 13-10-2018 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 SUPERFAMILY SSF49265 363 447 5.74E-11 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 SMART SM00060 367 436 1.7E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 Pfam PF00704 Glycosyl hydrolases family 18 38 340 8.1E-30 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 SMART SM00636 36 340 1.5E-6 T 13-10-2018 IPR011583 Chitinase II GO:0008061 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 ProSitePatterns PS01095 Chitinases family 18 active site. 139 147 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 Gene3D G3DSA:2.60.40.10 364 446 4.0E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 SUPERFAMILY SSF51445 33 349 2.57E-56 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 SUPERFAMILY SSF51055 454 497 1.57E-13 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 Gene3D G3DSA:2.10.10.20 455 497 8.6E-17 T 13-10-2018 CLM_1214 8ae52cdf6751cfea02bc81ee77bad3c1 499 Gene3D G3DSA:3.20.20.80 31 360 7.6E-102 T 13-10-2018 CLM_2892 2336cc5a6bf1cf6605ea212f7b0e93fd 336 Gene3D G3DSA:3.40.47.10 1 336 9.4E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_2892 2336cc5a6bf1cf6605ea212f7b0e93fd 336 SUPERFAMILY SSF53901 193 332 6.33E-16 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_2892 2336cc5a6bf1cf6605ea212f7b0e93fd 336 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 255 334 4.6E-17 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_2892 2336cc5a6bf1cf6605ea212f7b0e93fd 336 SUPERFAMILY SSF53901 4 186 9.52E-38 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_2892 2336cc5a6bf1cf6605ea212f7b0e93fd 336 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 111 197 5.7E-18 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_3540 ee6fa538462f6bf3f156760f9daae362 220 Pfam PF02080 TrkA-C domain 151 214 9.1E-14 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_3540 ee6fa538462f6bf3f156760f9daae362 220 Pfam PF02254 TrkA-N domain 6 121 4.2E-29 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CLM_3540 ee6fa538462f6bf3f156760f9daae362 220 Gene3D G3DSA:3.30.70.1450 139 215 1.2E-26 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_3540 ee6fa538462f6bf3f156760f9daae362 220 SUPERFAMILY SSF51735 4 135 1.27E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3540 ee6fa538462f6bf3f156760f9daae362 220 Gene3D G3DSA:3.40.50.720 1 138 1.5E-36 T 13-10-2018 CLM_3540 ee6fa538462f6bf3f156760f9daae362 220 SUPERFAMILY SSF116726 132 214 2.75E-21 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_3015 e5676fbe983ebb5be47fcedd3b4cefd2 135 Pfam PF04347 Flagellar biosynthesis protein, FliO 30 97 8.2E-9 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 CLM_3015 e5676fbe983ebb5be47fcedd3b4cefd2 135 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 13 82 1.9E-17 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 SUPERFAMILY SSF53790 1 251 6.54E-70 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 Pfam PF02602 Uroporphyrinogen-III synthase HemD 263 479 5.8E-49 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 Gene3D G3DSA:3.40.50.10090 399 486 3.5E-16 T 13-10-2018 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 211 2.8E-40 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 Gene3D G3DSA:3.30.950.10 118 266 2.1E-41 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 236 9.6E-91 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 Gene3D G3DSA:3.40.1010.10 1 117 4.3E-37 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 Gene3D G3DSA:3.40.50.10090 294 398 4.2E-22 T 13-10-2018 CLM_1069 146da553e4b53e4cd8c175fbf26ae460 486 SUPERFAMILY SSF69618 249 484 1.24E-49 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 433 443 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 SUPERFAMILY SSF50249 2 56 2.51E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 Gene3D G3DSA:3.40.1350.30 125 285 1.1E-114 T 13-10-2018 CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 87 450 1.9E-26 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 381 412 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 Pfam PF01938 TRAM domain 3 57 8.8E-7 T 13-10-2018 IPR002792 TRAM domain CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 SUPERFAMILY SSF53335 67 449 1.69E-78 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 Gene3D G3DSA:2.40.50.140 1 77 3.6E-17 T 13-10-2018 CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 17 443 3.4E-106 T 13-10-2018 CLM_3255 0f26ac31cd0b3d1c277815c9c2a27ad9 450 Gene3D G3DSA:3.40.50.150 79 445 1.1E-114 T 13-10-2018 CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 6 88 4.4E-30 T 13-10-2018 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 167 200 6.8E-11 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Gene3D G3DSA:3.30.70.250 3 85 1.1E-29 T 13-10-2018 CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 92 120 1.0E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 123 157 5.2E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Gene3D G3DSA:2.160.10.10 86 236 2.8E-46 T 13-10-2018 CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 175 203 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 SUPERFAMILY SSF51161 89 225 1.2E-49 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 3 236 43.19 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 CLM_3568 90275ce421eee6be749d0a547ccc8e81 236 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 9 236 1.0E-118 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 CLM_1188 1f4693369216eb3307e9c72310ef5fbc 145 SUPERFAMILY SSF55729 1 141 3.26E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1188 1f4693369216eb3307e9c72310ef5fbc 145 Gene3D G3DSA:3.40.630.30 1 140 4.6E-21 T 13-10-2018 CLM_1188 1f4693369216eb3307e9c72310ef5fbc 145 Pfam PF13673 Acetyltransferase (GNAT) domain 37 136 1.6E-10 T 13-10-2018 IPR000182 GNAT domain CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 SUPERFAMILY SSF50677 224 408 1.05E-54 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Gene3D G3DSA:1.10.730.10 593 749 6.4E-43 T 13-10-2018 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 219 397 5.6E-66 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Gene3D G3DSA:2.30.210.10 568 582 2.3E-251 T 13-10-2018 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 410 605 1.1E-20 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Gene3D G3DSA:3.10.20.590 751 813 2.7E-18 T 13-10-2018 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Gene3D G3DSA:3.90.740.10 226 408 2.3E-251 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Gene3D G3DSA:3.40.50.620 32 567 2.3E-251 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 213 232 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 553 563 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 520 542 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 PRINTS PR00985 Leucyl-tRNA synthetase signature 481 499 8.9E-50 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 SUPERFAMILY SSF47323 638 812 3.18E-32 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 6 813 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 812 21.736 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 SUPERFAMILY SSF52374 7 618 3.15E-139 T 13-10-2018 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Pfam PF09334 tRNA synthetases class I (M) 40 180 1.4E-17 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0234 6aba93c6ab1b321106f7a645bcb412f6 813 Pfam PF08264 Anticodon-binding domain of tRNA 658 776 2.5E-22 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CLM_0546 732e5f82d03543306f8f2181ba8dc1ad 278 Pfam PF04536 TPM domain 45 165 1.9E-37 T 13-10-2018 IPR007621 TPM domain CLM_0546 732e5f82d03543306f8f2181ba8dc1ad 278 Gene3D G3DSA:3.10.310.50 29 176 5.9E-46 T 13-10-2018 CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 Pfam PF00005 ABC transporter 357 505 2.1E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 Pfam PF00664 ABC transporter transmembrane region 25 294 1.1E-29 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 SUPERFAMILY SSF52540 337 556 3.79E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 SMART SM00382 366 551 4.8E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 Gene3D G3DSA:3.40.50.300 331 564 1.0E-73 T 13-10-2018 CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 SUPERFAMILY SSF90123 11 322 7.32E-56 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_3254 7d2a4383b63c9a814ef303455bc2a6e0 565 Gene3D G3DSA:1.20.1560.10 2 325 1.6E-54 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0332 9355a7045d66020d76e8673556194a08 349 Gene3D G3DSA:3.30.565.10 190 345 5.1E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0332 9355a7045d66020d76e8673556194a08 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 230 340 3.6E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0332 9355a7045d66020d76e8673556194a08 349 SUPERFAMILY SSF55874 188 340 2.88E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0332 9355a7045d66020d76e8673556194a08 349 SMART SM00387 229 344 2.0E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0332 9355a7045d66020d76e8673556194a08 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 298 5.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0332 9355a7045d66020d76e8673556194a08 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 304 322 5.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0332 9355a7045d66020d76e8673556194a08 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 341 5.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0332 9355a7045d66020d76e8673556194a08 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 284 5.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 Pfam PF00072 Response regulator receiver domain 7 115 7.4E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 SMART SM00862 152 228 6.0E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 SUPERFAMILY SSF52172 3 186 4.98E-40 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 SMART SM00448 5 115 1.3E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 Gene3D G3DSA:3.40.50.2300 1 132 6.5E-37 T 13-10-2018 CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 Gene3D G3DSA:1.10.10.10 133 230 1.3E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0926 dd5229dbb379f7185a0ee45abdaa3e22 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 7.5E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2192 57f09d788539cc10ae36d5dd924cf070 361 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 12 359 7.9E-74 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_2192 57f09d788539cc10ae36d5dd924cf070 361 Gene3D G3DSA:1.20.1740.10 9 247 1.2E-8 T 13-10-2018 CLM_2192 57f09d788539cc10ae36d5dd924cf070 361 Pfam PF03845 Spore germination protein 9 322 7.4E-77 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_3343 cca132b12fb0a28ba4e0ac3f28768e3c 166 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 132 142 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site CLM_3343 cca132b12fb0a28ba4e0ac3f28768e3c 166 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 162 4.4E-38 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CLM_3343 cca132b12fb0a28ba4e0ac3f28768e3c 166 Pfam PF02130 Uncharacterized protein family UPF0054 12 162 1.3E-46 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CLM_3343 cca132b12fb0a28ba4e0ac3f28768e3c 166 SUPERFAMILY SSF55486 1 165 9.77E-43 T 13-10-2018 CLM_3343 cca132b12fb0a28ba4e0ac3f28768e3c 166 Gene3D G3DSA:3.40.390.30 1 166 3.6E-42 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 CLM_3343 cca132b12fb0a28ba4e0ac3f28768e3c 166 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 166 23.071 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 Gene3D G3DSA:1.10.10.60 237 288 1.4E-16 T 13-10-2018 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 SUPERFAMILY SSF46689 241 289 7.17E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 308 323 8.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 323 339 8.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 SUPERFAMILY SSF46689 293 341 2.24E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 Gene3D G3DSA:1.10.10.60 289 345 7.9E-18 T 13-10-2018 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 293 335 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 Pfam PF12833 Helix-turn-helix domain 262 340 2.5E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 SMART SM00342 256 339 2.0E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1133 e7311e3ccf095dee658a54569d7cc1a4 345 Pfam PF10114 Sensory domain found in PocR 11 176 1.9E-49 T 13-10-2018 IPR018771 PocR domain CLM_1705 6d7ded46b6f3a04371557090a7c7c0bd 256 Gene3D G3DSA:3.30.70.330 80 165 6.5E-22 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLM_1705 6d7ded46b6f3a04371557090a7c7c0bd 256 SUPERFAMILY SSF55174 74 250 1.88E-18 T 13-10-2018 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 Pfam PF00871 Acetokinase family 2 389 6.7E-169 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 Gene3D G3DSA:3.30.420.40 196 397 7.2E-88 T 13-10-2018 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 TIGRFAM TIGR00016 ackA: acetate kinase 1 394 2.7E-167 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 Hamap MF_00020 Acetate kinase [ackA]. 1 397 202.034 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PRINTS PR00471 Acetate kinase family signature 203 224 5.4E-45 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PRINTS PR00471 Acetate kinase family signature 300 313 5.4E-45 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PRINTS PR00471 Acetate kinase family signature 173 186 5.4E-45 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PRINTS PR00471 Acetate kinase family signature 322 338 5.4E-45 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PRINTS PR00471 Acetate kinase family signature 3 14 5.4E-45 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PRINTS PR00471 Acetate kinase family signature 376 388 5.4E-45 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 SUPERFAMILY SSF53067 1 196 1.29E-74 T 13-10-2018 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 PIRSF PIRSF000722 1 397 5.9E-165 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 SUPERFAMILY SSF53067 157 394 9.72E-95 T 13-10-2018 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_2753 5d152f1d53605d5f88002f3bbb86dcca 397 Gene3D G3DSA:3.30.420.40 1 195 3.6E-81 T 13-10-2018 CLM_2030 f0a769e1783dfd75a584755a7fa65502 178 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 6 170 3.7E-23 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 CLM_2030 f0a769e1783dfd75a584755a7fa65502 178 Pfam PF00293 NUDIX domain 41 153 6.3E-20 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_2030 f0a769e1783dfd75a584755a7fa65502 178 SUPERFAMILY SSF55811 6 172 8.12E-49 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_2030 f0a769e1783dfd75a584755a7fa65502 178 Gene3D G3DSA:3.90.79.10 4 177 1.6E-53 T 13-10-2018 CLM_2030 f0a769e1783dfd75a584755a7fa65502 178 PRINTS PR00502 NUDIX hydrolase family signature 71 85 1.7E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_2030 f0a769e1783dfd75a584755a7fa65502 178 PRINTS PR00502 NUDIX hydrolase family signature 85 100 1.7E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 Pfam PF11734 TilS substrate C-terminal domain 386 453 1.6E-15 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 Pfam PF01171 PP-loop family 20 201 1.4E-51 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 SUPERFAMILY SSF56037 373 457 1.44E-23 T 13-10-2018 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 20 206 9.7E-59 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 SUPERFAMILY SSF52402 8 236 3.96E-55 T 13-10-2018 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 384 429 3.5E-19 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 296 24.263 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 SUPERFAMILY SSF82829 215 319 3.66E-10 T 13-10-2018 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 SMART SM00977 384 456 2.4E-30 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CLM_4012 e9b253ee667b391488e04ac7cd646e91 468 Gene3D G3DSA:3.40.50.620 1 212 4.2E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 TIGRFAM TIGR01250 pro_imino_pep_2: proline-specific peptidase 3 290 2.9E-88 T 13-10-2018 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 SUPERFAMILY SSF53474 12 291 2.57E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 30 38 2.1E-13 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 100 114 2.1E-13 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 57 68 2.1E-13 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 Pfam PF00561 alpha/beta hydrolase fold 28 277 6.7E-31 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 Gene3D G3DSA:3.40.50.1820 1 292 6.3E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2246 cbb918e69eb7693fe2cac73fb946e55d 293 PIRSF PIRSF005539 1 293 9.5E-100 T 13-10-2018 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 Gene3D G3DSA:4.10.950.10 197 276 4.3E-33 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 6.8E-55 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 2.4E-35 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 275 1.6E-134 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 SUPERFAMILY SSF50104 126 273 3.97E-60 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 SUPERFAMILY SSF50249 2 125 4.46E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 PIRSF PIRSF002158 7 276 1.3E-98 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 SMART SM01382 124 253 1.2E-89 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 SMART SM01383 42 118 4.5E-48 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 Gene3D G3DSA:2.40.50.140 1 114 2.2E-47 T 13-10-2018 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 Gene3D G3DSA:2.30.30.30 118 196 1.3E-34 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 47.361 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CLM_3945 36b747db65766e85bd4cb77accff9ccb 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 Gene3D G3DSA:3.30.70.920 60 142 5.1E-32 T 13-10-2018 CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 Pfam PF01037 Lrp/AsnC ligand binding domain 74 146 1.8E-18 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 SMART SM00344 8 115 7.2E-41 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 Gene3D G3DSA:1.10.10.10 6 59 2.0E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 SUPERFAMILY SSF54909 69 151 3.89E-20 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.4E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.4E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.4E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 SUPERFAMILY SSF46785 8 68 5.17E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0627 06f47a44727cc32f98b895d8bb3fb980 154 Pfam PF13404 AsnC-type helix-turn-helix domain 8 49 5.5E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CLM_1863 361d522fa0bd7d042546d63054b437e5 295 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 14 281 3.8E-97 T 13-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 CLM_1863 361d522fa0bd7d042546d63054b437e5 295 Gene3D G3DSA:3.20.20.220 2 292 1.4E-99 T 13-10-2018 CLM_1863 361d522fa0bd7d042546d63054b437e5 295 SUPERFAMILY SSF51730 1 283 3.34E-89 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like CLM_1863 361d522fa0bd7d042546d63054b437e5 295 Pfam PF02219 Methylenetetrahydrofolate reductase 3 281 4.7E-82 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 183 201 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 213 228 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 42 61 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 111 130 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 268 283 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 160 179 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PRINTS PR01469 Bacterial carbamate kinase signature 76 94 7.9E-63 T 13-10-2018 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 PIRSF PIRSF000723 1 314 1.4E-123 T 13-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 SUPERFAMILY SSF53633 1 312 3.14E-81 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 Gene3D G3DSA:3.40.1160.10 1 314 1.9E-121 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 TIGRFAM TIGR00746 arcC: carbamate kinase 1 313 2.0E-120 T 13-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 CLM_2901 ad5f8dfef4608504f23e0611a49cd8ce 314 Pfam PF00696 Amino acid kinase family 1 290 1.1E-29 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CLM_1803 c6190b6c292eeb21100be17271ea3266 312 Gene3D G3DSA:3.40.50.1360 52 311 1.2E-83 T 13-10-2018 CLM_1803 c6190b6c292eeb21100be17271ea3266 312 SUPERFAMILY SSF100950 63 311 1.5E-72 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_1803 c6190b6c292eeb21100be17271ea3266 312 Pfam PF04198 Putative sugar-binding domain 61 310 1.1E-71 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 CLM_1803 c6190b6c292eeb21100be17271ea3266 312 Gene3D G3DSA:1.10.10.60 3 51 1.6E-18 T 13-10-2018 CLM_1803 c6190b6c292eeb21100be17271ea3266 312 SUPERFAMILY SSF88659 12 46 1.05E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_1453 394582dd177a377a8af6581d324e5cb8 554 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 7 552 2.5E-198 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 CLM_1453 394582dd177a377a8af6581d324e5cb8 554 Gene3D G3DSA:3.10.20.580 448 554 8.6E-38 T 13-10-2018 CLM_1453 394582dd177a377a8af6581d324e5cb8 554 Gene3D G3DSA:3.40.50.10710 206 356 1.2E-184 T 13-10-2018 CLM_1453 394582dd177a377a8af6581d324e5cb8 554 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 353 406 6.3E-9 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLM_1453 394582dd177a377a8af6581d324e5cb8 554 Pfam PF00753 Metallo-beta-lactamase superfamily 17 163 7.8E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1453 394582dd177a377a8af6581d324e5cb8 554 PIRSF PIRSF004803 1 554 2.2E-236 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CLM_1453 394582dd177a377a8af6581d324e5cb8 554 Hamap MF_01491 Ribonuclease J [rnj]. 2 554 47.566 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CLM_1453 394582dd177a377a8af6581d324e5cb8 554 Gene3D G3DSA:3.60.15.10 10 441 1.2E-184 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1453 394582dd177a377a8af6581d324e5cb8 554 SUPERFAMILY SSF56281 8 423 2.92E-95 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1453 394582dd177a377a8af6581d324e5cb8 554 SMART SM00849 19 214 1.3E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Gene3D G3DSA:3.30.70.870 408 478 6.6E-18 T 13-10-2018 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Pfam PF14492 Elongation Factor G, domain II 399 470 1.4E-22 T 13-10-2018 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Gene3D G3DSA:3.40.50.300 2 288 1.3E-77 T 13-10-2018 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 PRINTS PR00315 GTP-binding elongation factor signature 10 23 2.6E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 PRINTS PR00315 GTP-binding elongation factor signature 76 86 2.6E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 PRINTS PR00315 GTP-binding elongation factor signature 92 103 2.6E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 PRINTS PR00315 GTP-binding elongation factor signature 128 137 2.6E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 177 8.4E-17 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SUPERFAMILY SSF50447 261 399 3.81E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Gene3D G3DSA:3.30.230.10 479 675 6.3E-84 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SMART SM00889 475 592 1.9E-66 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Gene3D G3DSA:2.40.30.10 289 407 8.0E-37 T 13-10-2018 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Pfam PF00679 Elongation factor G C-terminus 595 674 1.2E-26 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SUPERFAMILY SSF54980 399 477 4.32E-18 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Gene3D G3DSA:3.30.70.240 598 669 6.3E-84 T 13-10-2018 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SUPERFAMILY SSF54211 477 593 1.21E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SUPERFAMILY SSF54980 597 674 6.71E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Pfam PF03764 Elongation factor G, domain IV 474 592 5.0E-45 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 Pfam PF00009 Elongation factor Tu GTP binding domain 7 277 2.9E-40 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 TIGRFAM TIGR00484 EF-G: translation elongation factor G 5 678 6.4E-215 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SUPERFAMILY SSF52540 4 277 5.93E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3985 849e495b226cecb4740b64b5d77d3361 690 SMART SM00838 594 682 3.8E-31 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 SMART SM00646 62 170 3.1E-21 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 Pfam PF05036 Sporulation related domain 182 229 1.9E-5 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 SUPERFAMILY SSF110997 192 231 6.02E-6 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 Gene3D G3DSA:3.40.630.40 2 175 3.0E-41 T 13-10-2018 CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 Gene3D G3DSA:3.30.70.1070 176 232 8.0E-8 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 6 170 2.5E-36 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2289 37b63b1a1ef19c14b6a9041ebcf8316c 234 SUPERFAMILY SSF53187 3 174 5.44E-41 T 13-10-2018 CLM_1239 de8442696bd223ac6bea72d41bc79f38 241 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 4 205 5.7E-61 T 13-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like CLM_1239 de8442696bd223ac6bea72d41bc79f38 241 Gene3D G3DSA:3.40.50.1000 5 207 1.6E-33 T 13-10-2018 IPR023214 HAD superfamily CLM_1239 de8442696bd223ac6bea72d41bc79f38 241 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 194 1.7E-37 T 13-10-2018 CLM_1239 de8442696bd223ac6bea72d41bc79f38 241 Gene3D G3DSA:1.20.1440.100 16 92 1.6E-33 T 13-10-2018 CLM_1239 de8442696bd223ac6bea72d41bc79f38 241 SUPERFAMILY SSF56784 3 227 8.0E-28 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1239 de8442696bd223ac6bea72d41bc79f38 241 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 192 1.8E-19 T 13-10-2018 CLM_0619 50e4e7a035342db294fae83a154679da 569 Gene3D G3DSA:3.40.50.300 323 569 8.7E-78 T 13-10-2018 CLM_0619 50e4e7a035342db294fae83a154679da 569 SMART SM00382 360 561 2.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0619 50e4e7a035342db294fae83a154679da 569 SUPERFAMILY SSF90123 10 316 4.45E-52 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0619 50e4e7a035342db294fae83a154679da 569 Pfam PF00005 ABC transporter 351 500 7.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0619 50e4e7a035342db294fae83a154679da 569 SUPERFAMILY SSF52540 325 568 1.15E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0619 50e4e7a035342db294fae83a154679da 569 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0619 50e4e7a035342db294fae83a154679da 569 Gene3D G3DSA:1.20.1560.10 2 322 3.4E-51 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0619 50e4e7a035342db294fae83a154679da 569 Pfam PF00664 ABC transporter transmembrane region 24 291 2.7E-23 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 Gene3D G3DSA:3.40.50.300 166 444 1.2E-109 T 13-10-2018 CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 SUPERFAMILY SSF48024 6 118 6.67E-34 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 SMART SM00382 200 379 4.6E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 Pfam PF03796 DnaB-like helicase C terminal domain 183 438 4.9E-114 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 Pfam PF00772 DnaB-like helicase N terminal domain 8 109 8.3E-33 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 Gene3D G3DSA:1.10.860.10 4 164 2.0E-54 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 SUPERFAMILY SSF52540 181 431 1.68E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4125 c4013362fa7a7d4e142ffcf3d887a63b 445 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 8 439 3.7E-177 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 CLM_2293 8f56eeeaa2adfd6e288ae9f39614db60 73 Gene3D G3DSA:2.30.31.70 1 73 2.4E-33 T 13-10-2018 CLM_2293 8f56eeeaa2adfd6e288ae9f39614db60 73 PIRSF PIRSF037246 1 73 4.1E-37 T 13-10-2018 IPR017154 Uncharacterised conserved protein UCP037246 CLM_2293 8f56eeeaa2adfd6e288ae9f39614db60 73 Pfam PF02229 Transcriptional Coactivator p15 (PC4) 19 66 4.3E-10 T 13-10-2018 IPR003173 Transcriptional coactivator p15 (PC4) GO:0003677|GO:0006355 CLM_0958 60100eaab708c7f5a88b50aa56fd2fc5 260 Gene3D G3DSA:3.40.50.300 28 217 1.1E-42 T 13-10-2018 CLM_0958 60100eaab708c7f5a88b50aa56fd2fc5 260 Pfam PF02421 Ferrous iron transport protein B 28 180 5.2E-62 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 CLM_0958 60100eaab708c7f5a88b50aa56fd2fc5 260 SUPERFAMILY SSF52540 28 202 1.7E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3219 a58c7eec4e3049c4b8c259ed39131295 218 Gene3D G3DSA:3.40.1080.10 1 214 2.2E-89 T 13-10-2018 CLM_3219 a58c7eec4e3049c4b8c259ed39131295 218 SMART SM00882 6 202 5.1E-58 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 CLM_3219 a58c7eec4e3049c4b8c259ed39131295 218 Pfam PF01144 Coenzyme A transferase 6 201 4.5E-34 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 CLM_3219 a58c7eec4e3049c4b8c259ed39131295 218 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 208 1.6E-85 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 CLM_3219 a58c7eec4e3049c4b8c259ed39131295 218 SUPERFAMILY SSF100950 3 217 6.14E-68 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 SUPERFAMILY SSF46785 15 142 1.22E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 SMART SM00347 29 129 2.9E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 1.4E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 1.4E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.4E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.4E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 Pfam PF01047 MarR family 37 93 2.8E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2150 da2025dd38b74f8841a2fb28403442ac 147 Gene3D G3DSA:1.10.10.10 1 140 7.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3913 3c7ae837594d9c45f051720d9583968e 145 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 6 142 3.3E-59 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3913 3c7ae837594d9c45f051720d9583968e 145 Pfam PF00572 Ribosomal protein L13 15 139 7.7E-56 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CLM_3913 3c7ae837594d9c45f051720d9583968e 145 PIRSF PIRSF002181 1 144 2.0E-47 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CLM_3913 3c7ae837594d9c45f051720d9583968e 145 Gene3D G3DSA:3.90.1180.10 3 144 7.9E-60 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3913 3c7ae837594d9c45f051720d9583968e 145 ProSitePatterns PS00783 Ribosomal protein L13 signature. 106 128 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 CLM_3913 3c7ae837594d9c45f051720d9583968e 145 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 142 27.452 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CLM_3913 3c7ae837594d9c45f051720d9583968e 145 SUPERFAMILY SSF52161 5 143 1.83E-57 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3505 d03348ccba3afd7dd546d9615bf6c3e2 408 Pfam PF13439 Glycosyltransferase Family 4 19 205 6.5E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_3505 d03348ccba3afd7dd546d9615bf6c3e2 408 Gene3D G3DSA:3.40.50.2000 1 228 7.1E-22 T 13-10-2018 CLM_3505 d03348ccba3afd7dd546d9615bf6c3e2 408 SUPERFAMILY SSF53756 2 405 3.77E-54 T 13-10-2018 CLM_3505 d03348ccba3afd7dd546d9615bf6c3e2 408 Gene3D G3DSA:3.40.50.2000 229 394 4.7E-27 T 13-10-2018 CLM_3505 d03348ccba3afd7dd546d9615bf6c3e2 408 Pfam PF00534 Glycosyl transferases group 1 217 382 5.3E-18 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 Gene3D G3DSA:3.30.1490.20 1 183 4.0E-61 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 Pfam PF00391 PEP-utilising enzyme, mobile domain 744 815 4.2E-25 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 SUPERFAMILY SSF52009 714 817 1.12E-30 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 Gene3D G3DSA:3.50.30.10 715 825 1.4E-32 T 13-10-2018 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 328 1.3E-101 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 SUPERFAMILY SSF56059 3 318 4.71E-95 T 13-10-2018 CLM_2889 956f920dc3e454e550cc1820cb0ed43c 825 Gene3D G3DSA:3.30.470.20 185 334 4.6E-41 T 13-10-2018 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 SUPERFAMILY SSF50249 542 642 5.39E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 506 50.855 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Pfam PF09334 tRNA synthetases class I (M) 6 361 9.5E-117 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Gene3D G3DSA:3.40.50.620 6 334 2.0E-153 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 24 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Gene3D G3DSA:2.170.220.10 117 226 2.0E-153 T 13-10-2018 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Gene3D G3DSA:1.10.730.10 338 509 9.8E-52 T 13-10-2018 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Pfam PF08264 Anticodon-binding domain of tRNA 385 537 2.3E-7 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 PRINTS PR01041 Methionyl-tRNA synthetase signature 8 21 3.0E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 PRINTS PR01041 Methionyl-tRNA synthetase signature 349 360 3.0E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 PRINTS PR01041 Methionyl-tRNA synthetase signature 224 235 3.0E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 3.0E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 PRINTS PR01041 Methionyl-tRNA synthetase signature 257 272 3.0E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 3.0E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Pfam PF01588 Putative tRNA binding domain 549 641 3.5E-28 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 Gene3D G3DSA:2.40.50.140 533 644 3.6E-36 T 13-10-2018 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 511 644 9.1E-45 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 508 9.2E-177 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 SUPERFAMILY SSF47323 351 557 2.06E-46 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0119 57a65c11ce8acb824dd3566ae144eb02 645 SUPERFAMILY SSF52374 3 348 1.71E-118 T 13-10-2018 CLM_1973 d867a09a2b64e0d05df4cf3f98e3e799 467 SUPERFAMILY SSF53448 46 325 2.81E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1973 d867a09a2b64e0d05df4cf3f98e3e799 467 Pfam PF13641 Glycosyltransferase like family 2 47 272 6.7E-29 T 13-10-2018 CLM_1973 d867a09a2b64e0d05df4cf3f98e3e799 467 Gene3D G3DSA:3.90.550.10 32 269 4.2E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3317 c8ee43ac00eea15af1448fbe0dffb50a 247 Pfam PF12837 4Fe-4S binding domain 5 28 1.5E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3317 c8ee43ac00eea15af1448fbe0dffb50a 247 SUPERFAMILY SSF54862 7 70 3.74E-17 T 13-10-2018 CLM_3317 c8ee43ac00eea15af1448fbe0dffb50a 247 Gene3D G3DSA:3.30.70.20 4 63 6.0E-13 T 13-10-2018 CLM_2876 71f74f775b63a9ee0ac24456fbbbdbf3 148 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 1.5E-41 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_2876 71f74f775b63a9ee0ac24456fbbbdbf3 148 Pfam PF02082 Transcriptional regulator 1 82 5.0E-29 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_2876 71f74f775b63a9ee0ac24456fbbbdbf3 148 Gene3D G3DSA:1.10.10.10 1 143 3.8E-53 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2876 71f74f775b63a9ee0ac24456fbbbdbf3 148 SUPERFAMILY SSF46785 2 135 3.68E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3334 78d2786a58b1f7e76796bc1a803ffa53 342 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 38 165 2.2E-45 T 13-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 CLM_3334 78d2786a58b1f7e76796bc1a803ffa53 342 Pfam PF13286 Phosphohydrolase-associated domain 247 331 4.0E-14 T 13-10-2018 IPR026875 Phosphohydrolase-associated domain CLM_3334 78d2786a58b1f7e76796bc1a803ffa53 342 Pfam PF01966 HD domain 75 188 1.6E-18 T 13-10-2018 IPR006674 HD domain CLM_3334 78d2786a58b1f7e76796bc1a803ffa53 342 SUPERFAMILY SSF109604 27 339 1.74E-72 T 13-10-2018 CLM_3334 78d2786a58b1f7e76796bc1a803ffa53 342 SMART SM00471 71 199 4.3E-13 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3334 78d2786a58b1f7e76796bc1a803ffa53 342 Gene3D G3DSA:1.10.3210.10 1 335 3.6E-99 T 13-10-2018 CLM_3249 5fa0768461969b274c2f585529b9fee0 421 SUPERFAMILY SSF52743 3 150 1.27E-18 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_3249 5fa0768461969b274c2f585529b9fee0 421 Gene3D G3DSA:3.40.50.200 1 234 4.2E-21 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_0432 df618198f8f0e3fd4a581843ad6b79bc 224 SUPERFAMILY SSF48317 12 194 2.68E-6 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLM_0432 df618198f8f0e3fd4a581843ad6b79bc 224 Pfam PF14378 PAP2 superfamily 51 190 6.9E-9 T 13-10-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 CLM_1438 2c61f5d47e34161582277bac4d2a520d 235 SMART SM00914 192 229 4.0E-9 T 13-10-2018 IPR014957 IDEAL domain CLM_1438 2c61f5d47e34161582277bac4d2a520d 235 Pfam PF08858 IDEAL domain 198 228 2.1E-6 T 13-10-2018 IPR014957 IDEAL domain CLM_1942 36f15c039241aa705f6309bad4b8dba5 171 Pfam PF00210 Ferritin-like domain 7 143 3.0E-42 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CLM_1942 36f15c039241aa705f6309bad4b8dba5 171 SUPERFAMILY SSF47240 1 159 9.42E-60 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_1942 36f15c039241aa705f6309bad4b8dba5 171 Gene3D G3DSA:1.20.1260.10 1 171 1.0E-54 T 13-10-2018 IPR012347 Ferritin-like CLM_4035 77de965a5ffab599563f78720711d99a 228 Pfam PF00072 Response regulator receiver domain 8 117 5.7E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_4035 77de965a5ffab599563f78720711d99a 228 SMART SM00862 151 225 2.5E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_4035 77de965a5ffab599563f78720711d99a 228 SMART SM00448 6 116 1.3E-45 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_4035 77de965a5ffab599563f78720711d99a 228 SUPERFAMILY SSF52172 7 182 4.39E-45 T 13-10-2018 IPR011006 CheY-like superfamily CLM_4035 77de965a5ffab599563f78720711d99a 228 Gene3D G3DSA:3.40.50.2300 2 133 1.2E-40 T 13-10-2018 CLM_4035 77de965a5ffab599563f78720711d99a 228 Gene3D G3DSA:1.10.10.10 134 228 4.5E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4035 77de965a5ffab599563f78720711d99a 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 3.2E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0780 6d06123d1f225b8dc50b398426408d4b 328 SMART SM00849 22 231 7.4E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0780 6d06123d1f225b8dc50b398426408d4b 328 Gene3D G3DSA:3.60.15.10 1 258 3.2E-52 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0780 6d06123d1f225b8dc50b398426408d4b 328 Pfam PF00753 Metallo-beta-lactamase superfamily 24 205 3.2E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0780 6d06123d1f225b8dc50b398426408d4b 328 SUPERFAMILY SSF56281 21 324 1.09E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1638 2aba5169e5e1c2d70927dfb4da63fa27 92 SUPERFAMILY SSF101386 11 80 3.36E-7 T 13-10-2018 CLM_1638 2aba5169e5e1c2d70927dfb4da63fa27 92 Gene3D G3DSA:1.10.287.1080 4 91 1.5E-7 T 13-10-2018 CLM_1638 2aba5169e5e1c2d70927dfb4da63fa27 92 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 16 78 1.2E-4 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLM_2794 cc32bb95aef6349ad79b6bb2ca132b78 185 Pfam PF03602 Conserved hypothetical protein 95 1 181 9.8E-61 T 13-10-2018 CLM_2794 cc32bb95aef6349ad79b6bb2ca132b78 185 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 181 5.3E-48 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CLM_2794 cc32bb95aef6349ad79b6bb2ca132b78 185 SUPERFAMILY SSF53335 1 181 2.77E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2794 cc32bb95aef6349ad79b6bb2ca132b78 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 117 123 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CLM_2794 cc32bb95aef6349ad79b6bb2ca132b78 185 PIRSF PIRSF004553 1 184 1.6E-58 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CLM_2794 cc32bb95aef6349ad79b6bb2ca132b78 185 Gene3D G3DSA:3.40.50.150 1 185 1.5E-59 T 13-10-2018 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 SMART SM00387 302 414 1.6E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 SUPERFAMILY SSF158472 141 189 4.58E-6 T 13-10-2018 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 Gene3D G3DSA:3.30.565.10 262 414 3.7E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 Pfam PF00512 His Kinase A (phospho-acceptor) domain 195 256 4.0E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 SMART SM00388 194 258 4.8E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 411 5.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 367 5.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 353 5.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 392 5.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 SMART SM00304 140 193 0.0054 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 Gene3D G3DSA:1.10.287.130 201 259 7.2E-11 T 13-10-2018 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 Gene3D G3DSA:1.20.1480.50 109 200 9.9E-9 T 13-10-2018 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 SUPERFAMILY SSF47384 177 259 5.49E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 SUPERFAMILY SSF55874 249 412 6.68E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0324 45cbbf8cb7d83195b98742880c05b4a9 417 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 303 411 3.5E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 SMART SM00387 309 419 2.3E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 315 417 3.5E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 Gene3D G3DSA:1.10.287.130 144 264 3.8E-15 T 13-10-2018 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 SMART SM00388 198 264 1.0E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 Gene3D G3DSA:3.30.565.10 266 418 8.4E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 Pfam PF00512 His Kinase A (phospho-acceptor) domain 201 264 2.8E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 SUPERFAMILY SSF47384 186 264 7.85E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 SUPERFAMILY SSF55874 254 415 1.57E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 416 4.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 374 4.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 4.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0937 5bb4d5cae8814eeefdebb1e8ed401b6b 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 360 4.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 Pfam PF07669 Eco57I restriction-modification methylase 182 291 1.0E-7 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 SUPERFAMILY SSF53335 6 321 4.13E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 Pfam PF12950 TaqI-like C-terminal specificity domain 400 543 4.2E-13 T 13-10-2018 IPR025931 TaqI-like C-terminal specificity domain CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 Gene3D G3DSA:3.40.50.150 44 365 5.9E-44 T 13-10-2018 CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 88 102 1.7E-12 T 13-10-2018 CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 182 194 1.7E-12 T 13-10-2018 CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 58 74 1.7E-12 T 13-10-2018 CLM_3496 bfff701fb2fe5443e06073efed7512ca 577 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 218 242 1.7E-12 T 13-10-2018 CLM_2317 92db17a5a3f6c26e7662e8a55019a219 265 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 2 48 8.0E-18 T 13-10-2018 CLM_2317 92db17a5a3f6c26e7662e8a55019a219 265 Gene3D G3DSA:3.30.70.1710 1 114 7.3E-39 T 13-10-2018 CLM_2317 92db17a5a3f6c26e7662e8a55019a219 265 SUPERFAMILY SSF143414 1 96 2.22E-30 T 13-10-2018 IPR037233 CcmK-like superfamily CLM_2317 92db17a5a3f6c26e7662e8a55019a219 265 Pfam PF00936 BMC domain 3 80 7.0E-25 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2317 92db17a5a3f6c26e7662e8a55019a219 265 SMART SM00877 2 80 1.0E-32 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_0662 8266c95f97665d69f035d3bb662a3b0b 231 Pfam PF00005 ABC transporter 20 155 1.9E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0662 8266c95f97665d69f035d3bb662a3b0b 231 SUPERFAMILY SSF52540 4 215 9.59E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0662 8266c95f97665d69f035d3bb662a3b0b 231 SMART SM00382 29 204 2.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0662 8266c95f97665d69f035d3bb662a3b0b 231 Gene3D G3DSA:3.40.50.300 1 230 9.5E-48 T 13-10-2018 CLM_0330 cdba07f4bd1cdd943550fd3aabd693c6 160 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 13 138 2.0E-46 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0330 cdba07f4bd1cdd943550fd3aabd693c6 160 Gene3D G3DSA:2.70.70.10 3 160 1.3E-52 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0330 cdba07f4bd1cdd943550fd3aabd693c6 160 SUPERFAMILY SSF51261 3 159 1.74E-51 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0330 cdba07f4bd1cdd943550fd3aabd693c6 160 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 16 135 1.4E-40 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0330 cdba07f4bd1cdd943550fd3aabd693c6 160 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 77 89 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 Pfam PF01926 50S ribosome-binding GTPase 12 126 8.6E-19 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 Gene3D G3DSA:3.40.50.11410 286 394 2.3E-40 T 13-10-2018 CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 Gene3D G3DSA:3.40.50.300 2 176 1.4E-33 T 13-10-2018 CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 TIGRFAM TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF 3 390 9.3E-163 T 13-10-2018 IPR023873 [FeFe]-hydrogenase H-cluster maturation GTPase HydF CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 139 2.2E-18 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 SUPERFAMILY SSF52540 7 167 9.85E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4076 2b5fc89c1788f20e57d6172f79f2eb89 399 Gene3D G3DSA:3.40.50.11420 178 285 5.8E-42 T 13-10-2018 CLM_3458 a9c3f15bbd2f93a27467d6348a5ab606 142 PIRSF PIRSF004923 1 142 5.9E-20 T 13-10-2018 IPR026268 Protein RseC CLM_3458 a9c3f15bbd2f93a27467d6348a5ab606 142 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 138 1.5E-25 T 13-10-2018 CLM_2258 93b51544c139d7ae2e26f40b5d2fcc06 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 56 3.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_2258 93b51544c139d7ae2e26f40b5d2fcc06 189 Gene3D G3DSA:1.10.357.10 2 181 1.1E-38 T 13-10-2018 CLM_2258 93b51544c139d7ae2e26f40b5d2fcc06 189 SUPERFAMILY SSF46689 4 68 5.82E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 Gene3D G3DSA:2.40.30.20 13 100 4.8E-29 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 13 211 1.8E-70 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 PIRSF PIRSF000498 13 222 2.2E-74 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 SUPERFAMILY SSF63380 13 99 5.53E-25 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_3261 6bea10b03dc1209def43040f01a01d58 228 Gene3D G3DSA:2.40.30.20 113 217 6.2E-33 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 Pfam PF00677 Lumazine binding domain 15 98 1.5E-22 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 Pfam PF00677 Lumazine binding domain 111 195 4.5E-22 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3261 6bea10b03dc1209def43040f01a01d58 228 SUPERFAMILY SSF63380 105 210 1.11E-29 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_1244 1a2a5801552c24b7d411b7632b0453f5 213 SUPERFAMILY SSF161098 4 199 4.97E-44 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1244 1a2a5801552c24b7d411b7632b0453f5 213 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 212 3.7E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1244 1a2a5801552c24b7d411b7632b0453f5 213 Gene3D G3DSA:1.10.3720.10 2 213 2.5E-47 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0970 c4928b34b80874e1a597ebc87dd46fd0 395 SUPERFAMILY SSF51717 125 394 1.7E-99 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_0970 c4928b34b80874e1a597ebc87dd46fd0 395 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 133 391 1.5E-106 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 CLM_0970 c4928b34b80874e1a597ebc87dd46fd0 395 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 168 181 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_0970 c4928b34b80874e1a597ebc87dd46fd0 395 Pfam PF00809 Pterin binding enzyme 135 377 7.7E-90 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_0970 c4928b34b80874e1a597ebc87dd46fd0 395 Gene3D G3DSA:3.20.20.20 107 395 2.2E-111 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 Gene3D G3DSA:3.40.50.10300 184 395 2.9E-78 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 366 9.9E-70 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 Gene3D G3DSA:3.40.50.1950 1 183 1.2E-61 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 Pfam PF02441 Flavoprotein 6 172 1.7E-47 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 SUPERFAMILY SSF52507 2 175 2.75E-61 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 2 391 3.4E-143 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 CLM_2812 b2e2ee8621d277ddc917b8c781123a58 395 SUPERFAMILY SSF102645 182 393 2.35E-72 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CLM_1004 73a336232709155584e86753d24ebd26 192 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 179 9.6E-67 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CLM_1004 73a336232709155584e86753d24ebd26 192 Gene3D G3DSA:3.40.50.450 1 191 2.2E-77 T 13-10-2018 CLM_1004 73a336232709155584e86753d24ebd26 192 SUPERFAMILY SSF102405 1 179 4.43E-58 T 13-10-2018 CLM_1004 73a336232709155584e86753d24ebd26 192 Pfam PF03641 Possible lysine decarboxylase 46 176 6.0E-42 T 13-10-2018 IPR031100 LOG family CLM_1591 cf48b657be138647401bed28d4339c36 670 Gene3D G3DSA:3.40.50.300 269 604 2.2E-80 T 13-10-2018 CLM_1591 cf48b657be138647401bed28d4339c36 670 SUPERFAMILY SSF52540 6 596 2.31E-127 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1591 cf48b657be138647401bed28d4339c36 670 Pfam PF13361 UvrD-like helicase C-terminal domain 264 587 1.8E-48 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CLM_1591 cf48b657be138647401bed28d4339c36 670 Gene3D G3DSA:1.10.10.160 104 175 1.7E-69 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CLM_1591 cf48b657be138647401bed28d4339c36 670 Gene3D G3DSA:3.40.50.300 7 260 1.7E-69 T 13-10-2018 CLM_1591 cf48b657be138647401bed28d4339c36 670 Gene3D G3DSA:1.10.486.10 370 516 2.2E-80 T 13-10-2018 CLM_1591 cf48b657be138647401bed28d4339c36 670 Pfam PF13245 AAA domain 11 244 5.5E-33 T 13-10-2018 CLM_1813 58016a414b7a6511cf545f9d37190d00 253 Pfam PF00977 Histidine biosynthesis protein 5 235 3.6E-90 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 CLM_1813 58016a414b7a6511cf545f9d37190d00 253 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 49.914 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CLM_1813 58016a414b7a6511cf545f9d37190d00 253 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 2 252 2.1E-117 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CLM_1813 58016a414b7a6511cf545f9d37190d00 253 Gene3D G3DSA:3.20.20.70 1 253 5.6E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1813 58016a414b7a6511cf545f9d37190d00 253 SUPERFAMILY SSF51366 3 252 4.0E-81 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CLM_3827 a1d80ccf6e84e967d0fc1f2aea6271d4 133 SUPERFAMILY SSF46785 2 129 4.61E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3827 a1d80ccf6e84e967d0fc1f2aea6271d4 133 Pfam PF02082 Transcriptional regulator 1 83 1.2E-27 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_3827 a1d80ccf6e84e967d0fc1f2aea6271d4 133 Gene3D G3DSA:1.10.10.10 1 132 1.0E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3827 a1d80ccf6e84e967d0fc1f2aea6271d4 133 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 127 1.7E-40 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 ProSitePatterns PS00856 Guanylate kinase-like signature. 38 55 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 182 5.0E-73 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 Pfam PF00625 Guanylate kinase 7 183 8.7E-49 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 SUPERFAMILY SSF52540 3 187 5.41E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 Gene3D G3DSA:3.30.63.10 35 94 1.8E-66 T 13-10-2018 CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 Hamap MF_00328 Guanylate kinase [gmk]. 3 185 36.366 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 Gene3D G3DSA:3.40.50.300 9 181 1.8E-66 T 13-10-2018 CLM_2814 40717c23685eebdb7712d8cb502d72ae 209 SMART SM00072 4 185 5.6E-62 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CLM_3853 862178699b11b328fe575cc58da6483c 228 Pfam PF00005 ABC transporter 18 165 3.4E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3853 862178699b11b328fe575cc58da6483c 228 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3853 862178699b11b328fe575cc58da6483c 228 SMART SM00382 27 214 4.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3853 862178699b11b328fe575cc58da6483c 228 SUPERFAMILY SSF52540 1 219 3.55E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3853 862178699b11b328fe575cc58da6483c 228 Gene3D G3DSA:3.40.50.300 1 224 3.9E-70 T 13-10-2018 CLM_3853 862178699b11b328fe575cc58da6483c 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 2.1E-87 T 13-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 756 802 1.9E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 655 701 3.3E-15 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 706 752 1.8E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 553 597 2.4E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 503 548 3.5E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 608 651 5.2E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 4 804 24.972 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 SUPERFAMILY SSF56719 30 485 3.27E-184 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 SUPERFAMILY SSF101904 496 811 1.2E-109 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 SMART SM00434 10 462 2.0E-288 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 31 469 5.6E-163 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Gene3D G3DSA:1.10.268.10 367 455 7.7E-219 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 7 803 0.0 T 13-10-2018 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Gene3D G3DSA:2.120.10.90 493 804 8.9E-125 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Gene3D G3DSA:3.30.1360.40 235 330 7.7E-219 T 13-10-2018 CLM_0007 2ecd09be6478f6914a15f67838ed73a2 846 Gene3D G3DSA:3.90.199.10 31 484 7.7E-219 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CLM_1952 760341695b03080a2074ef9b9d562477 201 SUPERFAMILY SSF46785 7 71 6.62E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1952 760341695b03080a2074ef9b9d562477 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 128 139 1.2E-10 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CLM_1952 760341695b03080a2074ef9b9d562477 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 117 127 1.2E-10 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CLM_1952 760341695b03080a2074ef9b9d562477 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 168 1.2E-10 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CLM_1952 760341695b03080a2074ef9b9d562477 201 SUPERFAMILY SSF51306 79 199 6.98E-36 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CLM_1952 760341695b03080a2074ef9b9d562477 201 Hamap MF_00015 LexA repressor [lexA]. 4 201 33.639 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CLM_1952 760341695b03080a2074ef9b9d562477 201 Pfam PF00717 Peptidase S24-like 120 185 9.9E-16 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CLM_1952 760341695b03080a2074ef9b9d562477 201 Gene3D G3DSA:1.10.10.10 6 69 1.0E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1952 760341695b03080a2074ef9b9d562477 201 Pfam PF01726 LexA DNA binding domain 7 66 3.2E-21 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 CLM_1952 760341695b03080a2074ef9b9d562477 201 TIGRFAM TIGR00498 lexA: repressor LexA 7 200 2.3E-71 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CLM_1952 760341695b03080a2074ef9b9d562477 201 Gene3D G3DSA:2.10.109.10 85 201 3.2E-42 T 13-10-2018 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PIRSF PIRSF000513 1 265 7.5E-74 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 SUPERFAMILY SSF53613 5 262 1.03E-43 T 13-10-2018 IPR029056 Ribokinase-like CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 12 19 4.3E-27 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 82 99 4.3E-27 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 164 181 4.3E-27 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 113 127 4.3E-27 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 25 46 4.3E-27 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 56 64 4.3E-27 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 2 261 27.34 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 Pfam PF02110 Hydroxyethylthiazole kinase family 6 252 2.2E-60 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2460 9e3173257a53672e23230ccc2f55e580 265 Gene3D G3DSA:3.40.1190.20 1 265 5.0E-83 T 13-10-2018 IPR029056 Ribokinase-like CLM_0205 400fd6e9819f69d7f8db4a8975a612bf 248 SUPERFAMILY SSF51261 61 246 1.41E-27 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0205 400fd6e9819f69d7f8db4a8975a612bf 248 Gene3D G3DSA:2.70.70.10 80 248 9.2E-29 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0205 400fd6e9819f69d7f8db4a8975a612bf 248 Pfam PF01551 Peptidase family M23 143 242 8.8E-22 T 13-10-2018 IPR016047 Peptidase M23 CLM_2453 b39448b4fface42ab621184be54b1ff6 467 Pfam PF13520 Amino acid permease 11 430 2.6E-29 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2453 b39448b4fface42ab621184be54b1ff6 467 PIRSF PIRSF006060 1 466 1.6E-46 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2453 b39448b4fface42ab621184be54b1ff6 467 Gene3D G3DSA:1.20.1740.10 4 466 1.6E-22 T 13-10-2018 CLM_3103 c5741bc2ff9aec80e93210098a23565c 72 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-14 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CLM_3103 c5741bc2ff9aec80e93210098a23565c 72 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 69 5.2E-25 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CLM_3103 c5741bc2ff9aec80e93210098a23565c 72 Gene3D G3DSA:3.30.70.1680 1 62 3.2E-26 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 CLM_3103 c5741bc2ff9aec80e93210098a23565c 72 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 72 17.861 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CLM_3103 c5741bc2ff9aec80e93210098a23565c 72 SUPERFAMILY SSF117130 1 55 9.29E-19 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 CLM_3103 c5741bc2ff9aec80e93210098a23565c 72 Pfam PF02599 Global regulator protein family 1 53 1.0E-24 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CLM_4056 2356f371dc2a453c8f52cd99a3f55713 632 Pfam PF00120 Glutamine synthetase, catalytic domain 168 450 3.2E-37 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CLM_4056 2356f371dc2a453c8f52cd99a3f55713 632 SUPERFAMILY SSF55931 127 533 5.4E-60 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CLM_4056 2356f371dc2a453c8f52cd99a3f55713 632 Gene3D G3DSA:3.30.590.10 131 488 7.4E-56 T 13-10-2018 CLM_4056 2356f371dc2a453c8f52cd99a3f55713 632 SMART SM01230 150 429 1.4E-39 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CLM_1815 49a127b862d2cb49c4f0c71a8cfb5c3c 110 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 4 90 20.825 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CLM_1815 49a127b862d2cb49c4f0c71a8cfb5c3c 110 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 13 93 6.8E-16 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 CLM_1815 49a127b862d2cb49c4f0c71a8cfb5c3c 110 SUPERFAMILY SSF101386 5 94 1.87E-25 T 13-10-2018 CLM_1815 49a127b862d2cb49c4f0c71a8cfb5c3c 110 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 8 90 4.9E-31 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CLM_1815 49a127b862d2cb49c4f0c71a8cfb5c3c 110 Gene3D G3DSA:1.10.287.1080 3 97 5.2E-32 T 13-10-2018 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.5E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 Gene3D G3DSA:1.10.10.10 1 91 5.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 SUPERFAMILY SSF53850 90 291 1.09E-39 T 13-10-2018 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 Pfam PF03466 LysR substrate binding domain 89 291 4.4E-46 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 Gene3D G3DSA:3.40.190.290 92 293 4.1E-48 T 13-10-2018 CLM_4084 6bbeadfb0c4e7859ec57a0600e2a8930 293 SUPERFAMILY SSF46785 1 111 2.2E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 Gene3D G3DSA:3.40.50.300 1 244 1.3E-76 T 13-10-2018 CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 Pfam PF00005 ABC transporter 22 167 9.1E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 Pfam PF00571 CBS domain 314 369 4.7E-10 T 13-10-2018 IPR000644 CBS domain CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 Pfam PF00571 CBS domain 254 304 4.4E-9 T 13-10-2018 IPR000644 CBS domain CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 SMART SM00116 321 369 1.4E-6 T 13-10-2018 IPR000644 CBS domain CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 SMART SM00116 261 309 1.2E-4 T 13-10-2018 IPR000644 CBS domain CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 20 370 1.1E-121 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 Gene3D G3DSA:3.10.580.10 251 373 2.2E-29 T 13-10-2018 CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 SMART SM00382 30 217 3.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 SUPERFAMILY SSF52540 5 246 1.39E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1877 b5ba1df49d86f4a9eecb04228402c3a3 381 SUPERFAMILY SSF54631 252 368 2.02E-28 T 13-10-2018 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 1.6E-143 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 342 164.54 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 SMART SM00382 51 182 8.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 Gene3D G3DSA:1.10.8.60 182 255 1.5E-29 T 13-10-2018 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 Gene3D G3DSA:1.10.10.10 257 335 4.0E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 SUPERFAMILY SSF52540 20 251 5.29E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 SUPERFAMILY SSF46785 257 328 8.43E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 6.2E-34 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 11 235 3.7E-115 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 Gene3D G3DSA:3.40.50.300 20 181 1.4E-41 T 13-10-2018 CLM_3475 f8f0367c87ea33bcfbf08ea63d081559 342 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 332 1.0E-31 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CLM_2152 fa5eb2455466ca1579b215e7a78dd0cb 75 Gene3D G3DSA:3.10.20.30 1 75 3.5E-12 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_2152 fa5eb2455466ca1579b215e7a78dd0cb 75 Pfam PF02597 ThiS family 5 75 3.0E-10 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 CLM_2152 fa5eb2455466ca1579b215e7a78dd0cb 75 SUPERFAMILY SSF54285 2 75 2.47E-14 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 Gene3D G3DSA:3.90.1170.10 1 146 3.7E-59 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.4E-53 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 SUPERFAMILY SSF54686 1 140 8.77E-62 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 PRINTS PR00060 Ribosomal protein L16 signature 88 117 6.7E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 PRINTS PR00060 Ribosomal protein L16 signature 58 87 6.7E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 PRINTS PR00060 Ribosomal protein L16 signature 24 36 6.7E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 PRINTS PR00060 Ribosomal protein L16 signature 42 53 6.7E-39 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 3.1E-62 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 41.231 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3941 a032a839a941df8651ff0e839e8c4eb6 147 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 SUPERFAMILY SSF52096 13 277 2.49E-92 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 9 278 6.2E-125 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 10 109 2.2E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 Gene3D G3DSA:3.90.226.10 1 279 1.5E-104 T 13-10-2018 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 74 92 3.6E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 130 143 3.6E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 158 167 3.6E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 49 60 3.6E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 95 111 3.6E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 114 127 3.6E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_4086 35bc38e01037754c24cfb44a01d7d98b 279 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 277 41.013 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CLM_2731 51fb0111366dac446fa2f305e9b05a90 361 Pfam PF02481 DNA recombination-mediator protein A 73 278 1.2E-77 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CLM_2731 51fb0111366dac446fa2f305e9b05a90 361 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 72 285 4.4E-74 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CLM_2731 51fb0111366dac446fa2f305e9b05a90 361 Gene3D G3DSA:3.40.50.450 7 294 8.9E-94 T 13-10-2018 CLM_2731 51fb0111366dac446fa2f305e9b05a90 361 SUPERFAMILY SSF102405 81 287 2.38E-36 T 13-10-2018 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 2 499 43.138 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 SMART SM00851 14 128 3.7E-51 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 SUPERFAMILY SSF53927 203 499 1.4E-122 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 SUPERFAMILY SSF52335 2 191 6.72E-65 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 436 6.8E-117 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 Gene3D G3DSA:3.40.50.1380 1 197 4.8E-85 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 SMART SM00798 133 437 4.0E-181 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 PIRSF PIRSF000414 1 499 2.3E-210 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 Gene3D G3DSA:3.40.140.20 367 499 2.5E-53 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 Gene3D G3DSA:3.40.140.20 199 355 2.4E-61 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 Pfam PF02142 MGS-like domain 14 128 1.3E-24 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CLM_3270 d6d213fff080750ad376e43b4773c1aa 499 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3 499 1.6E-196 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 Pfam PF13361 UvrD-like helicase C-terminal domain 276 612 3.1E-73 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 Gene3D G3DSA:1.10.486.10 382 545 1.3E-123 T 13-10-2018 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 Gene3D G3DSA:3.40.50.300 279 630 1.3E-123 T 13-10-2018 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 Gene3D G3DSA:3.40.50.300 7 273 2.0E-103 T 13-10-2018 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 4 736 1.3E-287 T 13-10-2018 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 SUPERFAMILY SSF52540 4 639 3.66E-178 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 271 1.8E-80 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CLM_3705 0f3dc204793d29abedaa6633cfa4afc2 738 Gene3D G3DSA:1.10.10.160 111 186 2.0E-103 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CLM_1971 4c6393eb49e19ff7f6c2b6712cf77a56 429 Pfam PF09861 Domain of unknown function (DUF2088) 8 204 1.7E-76 T 13-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 CLM_1971 4c6393eb49e19ff7f6c2b6712cf77a56 429 Gene3D G3DSA:3.90.226.30 6 421 2.7E-138 T 13-10-2018 CLM_1971 4c6393eb49e19ff7f6c2b6712cf77a56 429 Gene3D G3DSA:3.40.50.11440 34 275 2.7E-138 T 13-10-2018 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 SUPERFAMILY SSF48557 8 454 1.57E-99 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 SMART SM00998 369 453 3.2E-28 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 Gene3D G3DSA:1.20.200.10 12 449 7.1E-159 T 13-10-2018 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 PRINTS PR00149 Fumarate lyase superfamily signature 280 296 4.4E-9 T 13-10-2018 IPR000362 Fumarate lyase family CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 4.4E-9 T 13-10-2018 IPR000362 Fumarate lyase family CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 PRINTS PR00149 Fumarate lyase superfamily signature 237 264 4.4E-9 T 13-10-2018 IPR000362 Fumarate lyase family CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 9 451 2.3E-118 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 ProSitePatterns PS00163 Fumarate lyases signature. 280 289 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 Pfam PF10397 Adenylosuccinate lyase C-terminus 370 449 2.2E-18 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 Gene3D G3DSA:1.10.275.60 23 234 7.1E-159 T 13-10-2018 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 Gene3D G3DSA:1.10.40.30 367 441 7.1E-159 T 13-10-2018 CLM_2688 6e1ce1a26b45e299fc0e0471ca449deb 476 Pfam PF00206 Lyase 26 303 3.5E-22 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CLM_0015 c68623329fd8948b7d6c7ea8197ad359 150 TIGRFAM TIGR00277 HDIG: HDIG domain 30 132 8.0E-8 T 13-10-2018 IPR006675 HDIG domain CLM_0015 c68623329fd8948b7d6c7ea8197ad359 150 Gene3D G3DSA:1.10.3210.10 15 149 1.0E-12 T 13-10-2018 CLM_0015 c68623329fd8948b7d6c7ea8197ad359 150 Pfam PF01966 HD domain 30 138 1.1E-9 T 13-10-2018 IPR006674 HD domain CLM_0015 c68623329fd8948b7d6c7ea8197ad359 150 SUPERFAMILY SSF109604 27 150 2.9E-10 T 13-10-2018 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 SUPERFAMILY SSF51569 8 308 1.57E-78 T 13-10-2018 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 SMART SM00858 298 355 5.9E-9 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 Gene3D G3DSA:3.90.1210.10 287 355 8.3E-24 T 13-10-2018 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 SUPERFAMILY SSF51269 292 355 1.03E-18 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 Pfam PF03102 NeuB family 42 281 2.1E-80 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 Pfam PF08666 SAF domain 299 353 8.3E-11 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CLM_3044 21a98749b26d8e0879992ef74b60824a 355 Gene3D G3DSA:3.20.20.70 5 281 2.3E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 SMART SM00283 280 528 2.6E-25 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 SUPERFAMILY SSF103190 61 179 1.36E-18 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 Gene3D G3DSA:1.10.287.950 234 563 3.3E-51 T 13-10-2018 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 348 513 1.6E-26 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 414 443 1.0E-16 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 385 412 1.0E-16 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.0E-16 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 SUPERFAMILY SSF58104 233 563 5.14E-53 T 13-10-2018 CLM_3169 371d06fcce4625deca2a4ef1984fd9ee 564 Pfam PF17202 Single cache domain 3 74 176 3.5E-36 T 13-10-2018 IPR033463 Single cache domain 3 CLM_2966 0891942b35e3700236dd3faeda15a7c0 310 Gene3D G3DSA:1.10.150.130 5 110 2.0E-11 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_2966 0891942b35e3700236dd3faeda15a7c0 310 SUPERFAMILY SSF56349 12 281 7.95E-50 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_2966 0891942b35e3700236dd3faeda15a7c0 310 Pfam PF00589 Phage integrase family 118 279 6.1E-28 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_2966 0891942b35e3700236dd3faeda15a7c0 310 Pfam PF13102 Phage integrase SAM-like domain 19 101 2.7E-7 T 13-10-2018 IPR025269 Phage integrase SAM-like domain CLM_2966 0891942b35e3700236dd3faeda15a7c0 310 Gene3D G3DSA:1.10.443.10 111 306 1.9E-36 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_2228 a279e14224a848de3d700629615a8ad4 376 SUPERFAMILY SSF52540 71 356 7.63E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2228 a279e14224a848de3d700629615a8ad4 376 SMART SM00487 21 218 4.3E-60 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2228 a279e14224a848de3d700629615a8ad4 376 SMART SM00490 254 335 1.3E-34 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2228 a279e14224a848de3d700629615a8ad4 376 Gene3D G3DSA:3.40.50.300 208 374 1.2E-51 T 13-10-2018 CLM_2228 a279e14224a848de3d700629615a8ad4 376 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 149 157 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_2228 a279e14224a848de3d700629615a8ad4 376 Pfam PF00270 DEAD/DEAH box helicase 26 192 1.6E-49 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_2228 a279e14224a848de3d700629615a8ad4 376 Gene3D G3DSA:3.40.50.300 1 207 9.9E-73 T 13-10-2018 CLM_2228 a279e14224a848de3d700629615a8ad4 376 Pfam PF00271 Helicase conserved C-terminal domain 227 335 2.2E-32 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 803 821 3.2E-12 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 541 563 3.2E-12 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 665 689 3.2E-12 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 SUPERFAMILY SSF51971 539 775 1.29E-43 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 TIGRFAM TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit 2 1005 0.0 T 13-10-2018 IPR017701 Putative selenate reductase YgfK CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 Gene3D G3DSA:1.10.1060.10 416 542 3.8E-20 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 Gene3D G3DSA:3.50.50.60 636 774 2.7E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 SUPERFAMILY SSF46548 444 550 2.98E-16 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 669 687 3.0E-17 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 793 815 3.0E-17 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 542 561 3.0E-17 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 766 782 3.0E-17 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 540 828 3.0E-35 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 444 520 1.5E-14 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 SUPERFAMILY SSF51395 45 399 1.77E-10 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 Gene3D G3DSA:3.50.50.60 543 831 2.7E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 SUPERFAMILY SSF51971 754 831 8.12E-7 T 13-10-2018 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 SUPERFAMILY SSF46548 871 945 1.52E-7 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3280 9ac917ab53b74e6b647c74e783902e62 1005 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 918 929 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 Hamap MF_00542 Probable butyrate kinase [buk]. 1 356 176.304 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 Gene3D G3DSA:3.30.420.40 5 355 1.9E-162 T 13-10-2018 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 SUPERFAMILY SSF53067 119 348 4.45E-56 T 13-10-2018 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 PRINTS PR00471 Acetate kinase family signature 179 200 2.5E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 PRINTS PR00471 Acetate kinase family signature 274 287 2.5E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 PRINTS PR00471 Acetate kinase family signature 297 313 2.5E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 PRINTS PR00471 Acetate kinase family signature 5 16 2.5E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 SUPERFAMILY SSF53067 3 173 4.75E-76 T 13-10-2018 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 179 196 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 Gene3D G3DSA:3.30.420.40 137 332 1.9E-162 T 13-10-2018 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 PIRSF PIRSF036458 1 356 1.1E-176 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 Pfam PF00871 Acetokinase family 4 352 2.0E-85 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3892 5924bb0b3c0632d3c4e4bb81534fff39 356 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 4 354 3.9E-177 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 CLM_0208 7b52aa98cc9122db4c97eb5149c97a9c 174 SUPERFAMILY SSF53163 8 171 1.07E-44 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CLM_0208 7b52aa98cc9122db4c97eb5149c97a9c 174 Pfam PF06866 Protein of unknown function (DUF1256) 6 163 1.7E-63 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 CLM_0208 7b52aa98cc9122db4c97eb5149c97a9c 174 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 28 165 1.9E-46 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 Gene3D G3DSA:3.90.220.20 243 397 4.5E-67 T 13-10-2018 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 Pfam PF01420 Type I restriction modification DNA specificity domain 239 426 3.6E-11 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 Pfam PF01420 Type I restriction modification DNA specificity domain 118 203 7.3E-5 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 Gene3D G3DSA:1.10.287.1120 171 444 4.5E-67 T 13-10-2018 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 SUPERFAMILY SSF116734 223 449 7.52E-40 T 13-10-2018 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 Gene3D G3DSA:3.90.220.20 20 447 4.5E-67 T 13-10-2018 CLM_2295 0ba8d67c355b3b7333f77bfa8c72a981 450 SUPERFAMILY SSF116734 4 224 3.11E-27 T 13-10-2018 CLM_2124 e88fbd3f94815d9013209f913bffe76a 134 SUPERFAMILY SSF54523 14 121 1.41E-15 T 13-10-2018 CLM_2124 e88fbd3f94815d9013209f913bffe76a 134 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CLM_2124 e88fbd3f94815d9013209f913bffe76a 134 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 33 2.2E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CLM_2124 e88fbd3f94815d9013209f913bffe76a 134 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 33 5.6E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CLM_2124 e88fbd3f94815d9013209f913bffe76a 134 Gene3D G3DSA:3.30.700.10 14 134 3.9E-19 T 13-10-2018 CLM_0328 62ad4b18fc1196d616aa0b68bbae6561 255 Gene3D G3DSA:1.10.10.10 3 74 3.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0328 62ad4b18fc1196d616aa0b68bbae6561 255 SUPERFAMILY SSF53697 95 252 7.97E-26 T 13-10-2018 CLM_0328 62ad4b18fc1196d616aa0b68bbae6561 255 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 73 1.8E-19 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_0328 62ad4b18fc1196d616aa0b68bbae6561 255 Pfam PF01380 SIS domain 118 218 2.4E-13 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_0328 62ad4b18fc1196d616aa0b68bbae6561 255 Gene3D G3DSA:3.40.50.10490 87 254 7.6E-31 T 13-10-2018 CLM_0328 62ad4b18fc1196d616aa0b68bbae6561 255 SUPERFAMILY SSF46689 7 73 1.97E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Gene3D G3DSA:3.40.950.10 278 507 7.4E-158 T 13-10-2018 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 SMART SM00902 519 576 1.9E-27 T 13-10-2018 IPR003149 Iron hydrogenase, small subunit CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 229 513 2.3E-100 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Pfam PF02256 Iron hydrogenase small subunit 523 576 2.3E-25 T 13-10-2018 IPR003149 Iron hydrogenase, small subunit CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Gene3D G3DSA:3.40.50.1780 212 516 7.4E-158 T 13-10-2018 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 196 207 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 90 127 1.9E-17 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Pfam PF13187 4Fe-4S dicluster domain 152 210 3.5E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Gene3D G3DSA:3.30.70.20 149 211 7.4E-158 T 13-10-2018 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 SUPERFAMILY SSF54292 3 90 2.57E-16 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Gene3D G3DSA:3.10.20.740 3 131 7.9E-42 T 13-10-2018 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 82 1.1E-18 T 13-10-2018 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 SUPERFAMILY SSF53920 195 574 2.75E-136 T 13-10-2018 IPR009016 Iron hydrogenase CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 SUPERFAMILY SSF54862 82 220 6.7E-39 T 13-10-2018 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 Gene3D G3DSA:4.10.260.20 520 577 1.4E-20 T 13-10-2018 IPR036991 Iron hydrogenase, small subunit superfamily CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 TIGRFAM TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A 145 517 6.4E-164 T 13-10-2018 IPR013352 Iron hydrogenase, subset GO:0005506|GO:0008901|GO:0051536|GO:0055114 CLM_2007 92076b27182b8de61125cafa57cfa9f4 577 SMART SM00929 90 130 1.1E-18 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 70 2.4E-14 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 3 587 52.872 T 13-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 427 436 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 SUPERFAMILY SSF47917 448 536 1.28E-24 T 13-10-2018 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 213 436 2.9E-93 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Gene3D G3DSA:3.40.50.300 74 436 2.4E-180 T 13-10-2018 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Gene3D G3DSA:2.40.30.20 1 73 1.6E-30 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 SUPERFAMILY SSF52540 181 441 1.13E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 SUPERFAMILY SSF50615 4 73 1.29E-13 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Gene3D G3DSA:1.10.1140.10 437 592 1.7E-53 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Gene3D G3DSA:2.40.50.100 117 186 2.4E-180 T 13-10-2018 CLM_2989 3a8178dd7acd3ed88728a4c093ac1b20 592 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 86 204 3.5E-46 T 13-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2219 7686e3024283264250b8d4b50bd2381f 353 Gene3D G3DSA:3.20.20.10 11 222 4.0E-24 T 13-10-2018 IPR029066 PLP-binding barrel CLM_2219 7686e3024283264250b8d4b50bd2381f 353 SUPERFAMILY SSF51419 8 225 1.81E-26 T 13-10-2018 IPR029066 PLP-binding barrel CLM_2219 7686e3024283264250b8d4b50bd2381f 353 Pfam PF01168 Alanine racemase, N-terminal domain 8 223 3.2E-17 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 Hamap MF_00983 Probable primosomal protein N' [priA]. 10 734 24.099 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 Gene3D G3DSA:1.10.8.630 8 120 8.2E-19 T 13-10-2018 CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 SMART SM00490 495 592 1.7E-9 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 Gene3D G3DSA:3.40.50.300 404 628 9.2E-19 T 13-10-2018 CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 SMART SM00487 197 392 7.4E-22 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 Pfam PF00271 Helicase conserved C-terminal domain 496 591 1.1E-8 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 SUPERFAMILY SSF52540 212 600 1.32E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 Pfam PF00270 DEAD/DEAH box helicase 205 362 8.6E-14 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 Gene3D G3DSA:3.40.50.300 187 379 1.4E-66 T 13-10-2018 CLM_2811 5ddf56fe8c3df3e2f113c0dff449d89a 735 TIGRFAM TIGR00595 priA: primosomal protein N' 221 731 5.4E-204 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CLM_1400 2b5fbfea006162c1c20c2029b6a6ae07 243 Gene3D G3DSA:3.40.50.300 1 235 6.1E-59 T 13-10-2018 CLM_1400 2b5fbfea006162c1c20c2029b6a6ae07 243 SMART SM00382 31 228 1.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1400 2b5fbfea006162c1c20c2029b6a6ae07 243 Pfam PF00005 ABC transporter 22 163 7.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1400 2b5fbfea006162c1c20c2029b6a6ae07 243 SUPERFAMILY SSF52540 4 225 2.0E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1400 2b5fbfea006162c1c20c2029b6a6ae07 243 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0152 dc095103e8e63faf3aa59f06fb674182 336 Gene3D G3DSA:3.90.1200.10 96 335 3.6E-74 T 13-10-2018 CLM_0152 dc095103e8e63faf3aa59f06fb674182 336 Gene3D G3DSA:3.30.200.20 1 94 1.7E-22 T 13-10-2018 CLM_0152 dc095103e8e63faf3aa59f06fb674182 336 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 16 331 1.1E-96 T 13-10-2018 IPR014255 Spore coat protein CotS CLM_0152 dc095103e8e63faf3aa59f06fb674182 336 Pfam PF01636 Phosphotransferase enzyme family 25 248 3.6E-13 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CLM_0152 dc095103e8e63faf3aa59f06fb674182 336 SUPERFAMILY SSF56112 2 332 1.11E-52 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_2359 92e5381bb25e5bb15579f82bf7fcc0f6 255 SMART SM00382 33 221 6.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2359 92e5381bb25e5bb15579f82bf7fcc0f6 255 Pfam PF00005 ABC transporter 25 172 6.1E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2359 92e5381bb25e5bb15579f82bf7fcc0f6 255 Gene3D G3DSA:3.40.50.300 1 244 3.1E-67 T 13-10-2018 CLM_2359 92e5381bb25e5bb15579f82bf7fcc0f6 255 SUPERFAMILY SSF52540 4 225 1.21E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2654 5d6496f732cf0b18cf34fafe024b3400 163 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 13 116 3.2E-27 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 SUPERFAMILY SSF88659 175 256 2.06E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 SUPERFAMILY SSF88946 5 110 1.23E-35 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 227 253 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 TIGRFAM TIGR02850 spore_sigG: RNA polymerase sigma-G factor 4 257 9.5E-154 T 13-10-2018 IPR014212 RNA polymerase sigma-G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 Gene3D G3DSA:1.10.601.10 11 113 4.2E-29 T 13-10-2018 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 Pfam PF04545 Sigma-70, region 4 206 255 3.4E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 36 256 2.7E-83 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 66 79 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 SUPERFAMILY SSF88659 114 189 7.41E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 Pfam PF04539 Sigma-70 region 3 124 176 2.5E-7 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 PIRSF PIRSF000770 11 257 5.1E-36 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 Pfam PF04542 Sigma-70 region 2 42 111 1.6E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 Gene3D G3DSA:1.20.140.160 114 257 2.9E-28 T 13-10-2018 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 PRINTS PR00046 Major sigma-70 factor signature 242 253 2.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 PRINTS PR00046 Major sigma-70 factor signature 210 222 2.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 PRINTS PR00046 Major sigma-70 factor signature 227 242 2.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 PRINTS PR00046 Major sigma-70 factor signature 90 98 2.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 PRINTS PR00046 Major sigma-70 factor signature 66 79 2.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2836 16819af41019ae9df5e9f3769bdd5e16 257 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 38 256 3.3E-37 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_3890 679e428c023555af06d2af82696da412 69 Gene3D G3DSA:3.30.70.20 2 69 1.1E-12 T 13-10-2018 CLM_3890 679e428c023555af06d2af82696da412 69 SUPERFAMILY SSF54862 3 68 2.71E-14 T 13-10-2018 CLM_3890 679e428c023555af06d2af82696da412 69 Pfam PF12838 4Fe-4S dicluster domain 10 61 6.5E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3890 679e428c023555af06d2af82696da412 69 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 50 61 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 Pfam PF00072 Response regulator receiver domain 6 116 7.8E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 Gene3D G3DSA:3.40.50.2300 1 133 2.8E-33 T 13-10-2018 CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 Gene3D G3DSA:3.40.1550.10 134 280 8.6E-26 T 13-10-2018 IPR028976 CheC-like superfamily CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 SMART SM00448 4 116 1.8E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 Pfam PF13690 Chemotaxis phosphatase CheX 170 256 1.4E-14 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 SUPERFAMILY SSF52172 1 128 2.13E-32 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1943 e8f4d41973b9bfa92b5b8145d9b7d9af 284 SUPERFAMILY SSF103039 131 279 2.88E-22 T 13-10-2018 IPR028976 CheC-like superfamily CLM_0724 df8e51ca8d9b54e947033f5692741b20 392 Pfam PF02353 Mycolic acid cyclopropane synthetase 105 373 2.1E-99 T 13-10-2018 CLM_0724 df8e51ca8d9b54e947033f5692741b20 392 PIRSF PIRSF003085 2 392 5.6E-124 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 CLM_0724 df8e51ca8d9b54e947033f5692741b20 392 Gene3D G3DSA:3.40.50.150 112 381 3.7E-97 T 13-10-2018 CLM_0724 df8e51ca8d9b54e947033f5692741b20 392 SUPERFAMILY SSF53335 3 331 1.32E-81 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0462 661944c7106375f7315b63d371330b16 231 Pfam PF01863 Protein of unknown function DUF45 21 225 5.0E-57 T 13-10-2018 IPR002725 Protein of unknown function DUF45 CLM_0462 661944c7106375f7315b63d371330b16 231 Gene3D G3DSA:3.30.2010.10 132 224 1.2E-19 T 13-10-2018 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 17 344 5.5E-156 T 13-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 Pfam PF03102 NeuB family 38 277 7.7E-97 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 SMART SM00858 292 350 6.6E-8 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 Pfam PF08666 SAF domain 293 346 1.4E-8 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 SUPERFAMILY SSF51269 287 349 2.51E-17 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 SUPERFAMILY SSF51569 5 304 4.03E-95 T 13-10-2018 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 Gene3D G3DSA:3.90.1210.10 293 350 2.5E-22 T 13-10-2018 CLM_3086 d27ff5fb2cb485288fed116ad784a5df 350 Gene3D G3DSA:3.20.20.70 4 277 7.6E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0304 87d738cf0e917248c6d89bc736eca879 170 SUPERFAMILY SSF55729 10 163 2.2E-14 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0304 87d738cf0e917248c6d89bc736eca879 170 Gene3D G3DSA:3.40.630.30 4 168 2.1E-27 T 13-10-2018 CLM_0304 87d738cf0e917248c6d89bc736eca879 170 Pfam PF13420 Acetyltransferase (GNAT) domain 32 164 2.6E-7 T 13-10-2018 CLM_0869 422671bbc2a9abdc3771f29fa49f05cf 208 Pfam PF08241 Methyltransferase domain 43 138 4.6E-17 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CLM_0869 422671bbc2a9abdc3771f29fa49f05cf 208 SUPERFAMILY SSF53335 5 183 2.63E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0869 422671bbc2a9abdc3771f29fa49f05cf 208 Gene3D G3DSA:3.40.50.150 2 189 9.9E-34 T 13-10-2018 CLM_3893 584f7dc4e36c38932fc0e8e8e74a490b 303 TIGRFAM TIGR02706 P_butyryltrans: phosphate butyryltransferase 5 298 7.4E-146 T 13-10-2018 IPR014079 Phosphate butyryltransferase GO:0016740|GO:0019605|GO:0050182 KEGG: 00650+2.3.1.19 CLM_3893 584f7dc4e36c38932fc0e8e8e74a490b 303 PIRSF PIRSF000428 1 302 4.7E-98 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_3893 584f7dc4e36c38932fc0e8e8e74a490b 303 SUPERFAMILY SSF53659 4 298 2.54E-68 T 13-10-2018 CLM_3893 584f7dc4e36c38932fc0e8e8e74a490b 303 Gene3D G3DSA:3.40.718.10 2 300 5.5E-109 T 13-10-2018 CLM_3893 584f7dc4e36c38932fc0e8e8e74a490b 303 Pfam PF01515 Phosphate acetyl/butaryl transferase 76 295 6.6E-66 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 5 329 3.7E-110 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 SUPERFAMILY SSF52374 7 329 3.82E-98 T 13-10-2018 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 5 330 42.084 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 Gene3D G3DSA:3.40.50.620 8 328 2.2E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 Pfam PF00579 tRNA synthetases class I (W and Y) 5 284 5.8E-80 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 Gene3D G3DSA:1.10.240.10 188 297 2.2E-136 T 13-10-2018 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 1.0E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 18 34 1.0E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 197 207 1.0E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 1.0E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CLM_3767 7575e45c79cb1b0b3e7a25ef6120f414 332 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 23 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_3932 d49d5ddbc844314380738e853a7c803a 119 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 8 119 2.7E-42 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3932 d49d5ddbc844314380738e853a7c803a 119 SUPERFAMILY SSF53137 7 117 1.0E-51 T 13-10-2018 CLM_3932 d49d5ddbc844314380738e853a7c803a 119 Gene3D G3DSA:3.30.420.100 5 119 1.3E-43 T 13-10-2018 CLM_3932 d49d5ddbc844314380738e853a7c803a 119 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 6 119 29.503 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3932 d49d5ddbc844314380738e853a7c803a 119 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 6 119 1.2E-47 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 1.2E-38 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 Gene3D G3DSA:1.10.150.300 111 198 1.8E-161 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 Gene3D G3DSA:3.10.20.30 46 363 1.8E-161 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 Pfam PF01926 50S ribosome-binding GTPase 3 113 1.9E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 SUPERFAMILY SSF81271 281 362 1.05E-34 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 SUPERFAMILY SSF52540 1 303 7.54E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 1 365 44.641 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 68 83 8.4E-37 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 3 23 8.4E-37 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 85 103 8.4E-37 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 24 42 8.4E-37 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 Gene3D G3DSA:3.40.50.300 1 280 1.8E-161 T 13-10-2018 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 2 365 5.6E-157 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CLM_1689 9d870d66cfe1b159bcbf2593791218d2 365 PIRSF PIRSF006641 1 365 1.7E-161 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CLM_3394 30ca8830c80002cf6f5b262e9e923885 209 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 5 202 1.7E-30 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CLM_3394 30ca8830c80002cf6f5b262e9e923885 209 Gene3D G3DSA:2.160.20.70 82 205 1.3E-37 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 CLM_3394 30ca8830c80002cf6f5b262e9e923885 209 SUPERFAMILY SSF63848 100 203 6.93E-32 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 CLM_3394 30ca8830c80002cf6f5b262e9e923885 209 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 102 199 4.9E-31 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 CLM_3394 30ca8830c80002cf6f5b262e9e923885 209 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 4 204 22.945 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 Pfam PF00082 Subtilase family 157 466 6.6E-46 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 SUPERFAMILY SSF52743 136 477 1.06E-67 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 PRINTS PR00723 Subtilisin serine protease family (S8) signature 205 218 1.6E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 PRINTS PR00723 Subtilisin serine protease family (S8) signature 156 175 1.6E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 PRINTS PR00723 Subtilisin serine protease family (S8) signature 417 433 1.6E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 209 219 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 418 428 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 Gene3D G3DSA:3.40.50.200 121 480 8.9E-83 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_3771 e1e9a1e9d3b32fe966489c3dc0dca3e2 480 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 161 172 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 139 153 2.9E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 294 309 2.9E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 227 246 2.9E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 SUPERFAMILY SSF53738 29 234 5.1E-48 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Gene3D G3DSA:3.40.120.10 31 187 2.5E-50 T 13-10-2018 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 SUPERFAMILY SSF55957 441 570 2.09E-15 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Gene3D G3DSA:3.30.310.50 467 565 3.3E-10 T 13-10-2018 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 507 553 1.2E-9 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 314 6.3E-22 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 SUPERFAMILY SSF53738 210 316 1.73E-19 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 SUPERFAMILY SSF53738 302 452 3.92E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 43 180 2.8E-43 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Gene3D G3DSA:3.40.120.10 324 449 3.1E-35 T 13-10-2018 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 322 447 1.0E-19 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CLM_4124 d07dd1ffaa0b9ebda1b99b2437fde584 573 Gene3D G3DSA:3.40.120.10 209 323 1.6E-22 T 13-10-2018 CLM_0909 3af80067e8be2d70a145b6e1586a5507 356 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 12 342 6.4E-118 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 CLM_0909 3af80067e8be2d70a145b6e1586a5507 356 PIRSF PIRSF005508 1 356 1.2E-132 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 CLM_0909 3af80067e8be2d70a145b6e1586a5507 356 Pfam PF01758 Sodium Bile acid symporter family 57 254 7.4E-47 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 CLM_0909 3af80067e8be2d70a145b6e1586a5507 356 Gene3D G3DSA:1.20.1530.20 5 342 1.0E-28 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 Gene3D G3DSA:3.30.160.40 216 290 6.7E-14 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 289 3.4E-100 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 PRINTS PR00151 Porphobilinogen deaminase signature 41 61 6.2E-40 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 PRINTS PR00151 Porphobilinogen deaminase signature 139 156 6.2E-40 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 PRINTS PR00151 Porphobilinogen deaminase signature 72 91 6.2E-40 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 PRINTS PR00151 Porphobilinogen deaminase signature 120 137 6.2E-40 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 PRINTS PR00151 Porphobilinogen deaminase signature 225 242 6.2E-40 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 SUPERFAMILY SSF53850 3 205 1.41E-72 T 13-10-2018 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 2 290 34.247 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 SUPERFAMILY SSF54782 215 289 4.71E-18 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 PIRSF PIRSF001438 1 290 1.9E-104 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 Gene3D G3DSA:3.40.190.10 5 204 3.6E-75 T 13-10-2018 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 221 288 9.9E-15 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 206 5.5E-71 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CLM_1068 2dfe3d96ea552b24c67a8411fd439bca 290 Gene3D G3DSA:3.40.190.10 99 198 3.6E-75 T 13-10-2018 CLM_3592 cb204d868bcdb24e79c018ef53de3cc5 291 Pfam PF01925 Sulfite exporter TauE/SafE 169 283 3.1E-8 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_3592 cb204d868bcdb24e79c018ef53de3cc5 291 Pfam PF01925 Sulfite exporter TauE/SafE 7 146 1.7E-8 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 Gene3D G3DSA:3.40.50.300 214 403 5.5E-50 T 13-10-2018 CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 Pfam PF00271 Helicase conserved C-terminal domain 233 340 1.6E-27 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 SMART SM00487 20 223 1.3E-59 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 SUPERFAMILY SSF52540 76 361 6.44E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 SMART SM00490 259 340 4.9E-32 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 Pfam PF00270 DEAD/DEAH box helicase 25 197 1.5E-51 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_0749 edeab45df2f89c9a8fa79f0a79dd93bd 425 Gene3D G3DSA:3.40.50.300 1 211 2.5E-76 T 13-10-2018 CLM_1391 1e87355ea70208b44ac79bdfa0f26968 208 Pfam PF00692 dUTPase 15 98 3.5E-14 T 13-10-2018 IPR029054 dUTPase-like CLM_1391 1e87355ea70208b44ac79bdfa0f26968 208 Pfam PF00692 dUTPase 163 206 3.4E-5 T 13-10-2018 IPR029054 dUTPase-like CLM_1391 1e87355ea70208b44ac79bdfa0f26968 208 SUPERFAMILY SSF51283 5 207 1.55E-32 T 13-10-2018 IPR036157 dUTPase-like superfamily CLM_2352 3491a73214afe75012f56a6990b1d567 361 Gene3D G3DSA:3.50.50.60 2 351 7.0E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2352 3491a73214afe75012f56a6990b1d567 361 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 1.1E-14 T 13-10-2018 CLM_2352 3491a73214afe75012f56a6990b1d567 361 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 296 1.1E-14 T 13-10-2018 CLM_2352 3491a73214afe75012f56a6990b1d567 361 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 265 280 1.1E-14 T 13-10-2018 CLM_2352 3491a73214afe75012f56a6990b1d567 361 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.1E-14 T 13-10-2018 CLM_2352 3491a73214afe75012f56a6990b1d567 361 SUPERFAMILY SSF51905 4 319 4.92E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3758 33834da9bbba5c66cb1031dcc76e3516 152 Pfam PF00583 Acetyltransferase (GNAT) family 17 127 9.3E-22 T 13-10-2018 IPR000182 GNAT domain CLM_3758 33834da9bbba5c66cb1031dcc76e3516 152 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 15 147 1.1E-43 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 CLM_3758 33834da9bbba5c66cb1031dcc76e3516 152 SUPERFAMILY SSF55729 5 149 1.05E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3758 33834da9bbba5c66cb1031dcc76e3516 152 Gene3D G3DSA:3.40.630.30 8 151 6.0E-40 T 13-10-2018 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 Pfam PF16657 Maltogenic Amylase, C-terminal domain 473 545 2.6E-7 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 Pfam PF00128 Alpha amylase, catalytic domain 26 369 6.3E-118 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 4 551 5.0E-270 T 13-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 Gene3D G3DSA:3.90.400.10 108 167 3.0E-24 T 13-10-2018 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 Gene3D G3DSA:3.20.20.80 168 473 2.1E-117 T 13-10-2018 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 Gene3D G3DSA:2.60.40.1180 474 555 8.3E-24 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 SUPERFAMILY SSF51445 4 470 8.75E-148 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 Gene3D G3DSA:3.20.20.80 2 107 4.4E-45 T 13-10-2018 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 SMART SM00642 11 412 2.8E-142 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CLM_2205 a27c288cc2e6e9817637299074c1b0f2 555 SUPERFAMILY SSF51011 473 552 1.2E-18 T 13-10-2018 CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 13-10-2018 IPR019808 Histidine triad, conserved site CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 Gene3D G3DSA:3.30.428.10 1 114 1.1E-45 T 13-10-2018 IPR036265 HIT-like superfamily CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 SUPERFAMILY SSF54197 1 113 1.84E-41 T 13-10-2018 IPR036265 HIT-like superfamily CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 PRINTS PR00332 Histidine triad family signature 5 21 2.3E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 PRINTS PR00332 Histidine triad family signature 94 104 2.3E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 PRINTS PR00332 Histidine triad family signature 26 44 2.3E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_3349 428b867e1d1acba610e4d0ad31af86e3 114 Pfam PF01230 HIT domain 11 108 6.5E-30 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_1859 e3fa6b173e11b3e21cf08b185bf3a680 179 Pfam PF04542 Sigma-70 region 2 28 78 1.7E-4 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_1859 e3fa6b173e11b3e21cf08b185bf3a680 179 Pfam PF08281 Sigma-70, region 4 123 174 1.5E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_1859 e3fa6b173e11b3e21cf08b185bf3a680 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 178 3.5E-26 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_1859 e3fa6b173e11b3e21cf08b185bf3a680 179 Gene3D G3DSA:1.10.10.10 42 179 6.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1859 e3fa6b173e11b3e21cf08b185bf3a680 179 SUPERFAMILY SSF88946 4 79 3.53E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_1859 e3fa6b173e11b3e21cf08b185bf3a680 179 SUPERFAMILY SSF88659 106 178 7.66E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3244 60fa8ab7014537fdddc29a8ca3820d0a 234 Gene3D G3DSA:3.10.620.30 1 143 6.0E-16 T 13-10-2018 CLM_3244 60fa8ab7014537fdddc29a8ca3820d0a 234 Pfam PF01841 Transglutaminase-like superfamily 25 132 6.4E-16 T 13-10-2018 IPR002931 Transglutaminase-like CLM_3244 60fa8ab7014537fdddc29a8ca3820d0a 234 SUPERFAMILY SSF54001 16 148 4.63E-21 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0141 39ae1f7c55bab68881666fa0bf5bcf85 212 SUPERFAMILY SSF56281 1 185 9.42E-24 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0141 39ae1f7c55bab68881666fa0bf5bcf85 212 Pfam PF13483 Beta-lactamase superfamily domain 2 162 2.1E-44 T 13-10-2018 CLM_0141 39ae1f7c55bab68881666fa0bf5bcf85 212 Gene3D G3DSA:3.60.15.10 1 211 7.9E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0999 a42044984786c2a977d476ecf2c93e7c 233 Gene3D G3DSA:2.60.120.10 8 229 1.2E-77 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0999 a42044984786c2a977d476ecf2c93e7c 233 PIRSF PIRSF006232 1 231 1.0E-53 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CLM_0999 a42044984786c2a977d476ecf2c93e7c 233 SUPERFAMILY SSF51182 4 229 4.33E-66 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_0999 a42044984786c2a977d476ecf2c93e7c 233 Pfam PF02678 Pirin 15 118 1.2E-31 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CLM_0999 a42044984786c2a977d476ecf2c93e7c 233 Gene3D G3DSA:2.60.120.10 11 134 1.2E-77 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_1914 9fa7823c1e725a2ae943b9b47ac748ab 273 SUPERFAMILY SSF161098 67 262 1.13E-24 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1914 9fa7823c1e725a2ae943b9b47ac748ab 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 265 9.9E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1914 9fa7823c1e725a2ae943b9b47ac748ab 273 Gene3D G3DSA:1.10.3720.10 70 272 2.1E-19 T 13-10-2018 IPR035906 MetI-like superfamily CLM_4066 f42de9bfe5dbe819246383a216aaa68a 191 Pfam PF03358 NADPH-dependent FMN reductase 1 156 1.2E-30 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_4066 f42de9bfe5dbe819246383a216aaa68a 191 Gene3D G3DSA:3.40.50.360 1 187 6.8E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_4066 f42de9bfe5dbe819246383a216aaa68a 191 SUPERFAMILY SSF52218 1 189 6.68E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1138 4ba936fab138aaf14bda995854ce0877 281 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 228 243 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PIRSF PIRSF000097 1 120 1.9E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PIRSF PIRSF000097 116 277 1.3E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 SUPERFAMILY SSF51430 6 267 3.67E-96 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1138 4ba936fab138aaf14bda995854ce0877 281 Pfam PF00248 Aldo/keto reductase family 19 260 5.5E-57 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CLM_1138 4ba936fab138aaf14bda995854ce0877 281 Gene3D G3DSA:3.20.20.100 2 274 2.2E-117 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PRINTS PR00069 Aldo-keto reductase signature 158 187 1.5E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PRINTS PR00069 Aldo-keto reductase signature 124 141 1.5E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PRINTS PR00069 Aldo-keto reductase signature 195 219 1.5E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PRINTS PR00069 Aldo-keto reductase signature 95 113 1.5E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 PRINTS PR00069 Aldo-keto reductase signature 39 63 1.5E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_1138 4ba936fab138aaf14bda995854ce0877 281 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 124 141 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CLM_2362 e8cedb855324f64c627065b37a88e1d4 454 Pfam PF03611 PTS system sugar-specific permease component 11 405 4.8E-134 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CLM_0645 f93e4f021d6606048620c3dc499e8908 67 Pfam PF01381 Helix-turn-helix 8 62 1.9E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0645 f93e4f021d6606048620c3dc499e8908 67 SUPERFAMILY SSF47413 4 66 2.95E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0645 f93e4f021d6606048620c3dc499e8908 67 Gene3D G3DSA:1.10.260.40 3 67 1.4E-26 T 13-10-2018 CLM_0645 f93e4f021d6606048620c3dc499e8908 67 SMART SM00530 7 62 1.6E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1153 7d2bd9a8cd136411dba16fb9c65079a7 127 Pfam PF00072 Response regulator receiver domain 8 121 4.6E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1153 7d2bd9a8cd136411dba16fb9c65079a7 127 Gene3D G3DSA:3.40.50.2300 4 127 7.3E-26 T 13-10-2018 CLM_1153 7d2bd9a8cd136411dba16fb9c65079a7 127 SMART SM00448 6 121 1.2E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1153 7d2bd9a8cd136411dba16fb9c65079a7 127 SUPERFAMILY SSF52172 5 125 1.71E-24 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 Gene3D G3DSA:2.40.110.10 120 232 6.9E-40 T 13-10-2018 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 2.8E-27 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 SUPERFAMILY SSF56645 2 238 1.57E-79 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 PIRSF PIRSF016578 127 377 6.3E-21 T 13-10-2018 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 PIRSF PIRSF016578 3 92 5.3E-8 T 13-10-2018 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 Gene3D G3DSA:1.10.540.10 1 117 1.1E-38 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 Gene3D G3DSA:1.20.140.10 233 377 6.0E-59 T 13-10-2018 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 3.1E-35 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 SUPERFAMILY SSF47203 225 377 9.18E-61 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CLM_3721 c96fb9f470b8abd394e0f4c9236295c0 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 9.1E-55 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CLM_1533 55fa4c7d2c5a4ff665fc6db8524e05f9 264 SMART SM00382 30 229 1.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1533 55fa4c7d2c5a4ff665fc6db8524e05f9 264 Pfam PF00005 ABC transporter 23 179 1.3E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1533 55fa4c7d2c5a4ff665fc6db8524e05f9 264 SUPERFAMILY SSF52540 14 251 1.15E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1533 55fa4c7d2c5a4ff665fc6db8524e05f9 264 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1533 55fa4c7d2c5a4ff665fc6db8524e05f9 264 Gene3D G3DSA:3.40.50.300 1 261 1.6E-63 T 13-10-2018 CLM_3047 fe2230eb10d1b0540ea2b1d6066f7dd8 317 Gene3D G3DSA:3.40.50.11110 202 312 6.7E-6 T 13-10-2018 CLM_1469 abce6b5dbdf883dd48f302581166787f 230 Pfam PF00072 Response regulator receiver domain 4 113 1.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1469 abce6b5dbdf883dd48f302581166787f 230 SMART SM00448 2 112 5.7E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1469 abce6b5dbdf883dd48f302581166787f 230 SUPERFAMILY SSF52172 1 177 9.68E-37 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1469 abce6b5dbdf883dd48f302581166787f 230 Gene3D G3DSA:1.10.10.10 126 229 3.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1469 abce6b5dbdf883dd48f302581166787f 230 Gene3D G3DSA:3.40.50.2300 1 122 4.3E-35 T 13-10-2018 CLM_1469 abce6b5dbdf883dd48f302581166787f 230 SMART SM00862 146 223 3.9E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1469 abce6b5dbdf883dd48f302581166787f 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 222 1.9E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 Gene3D G3DSA:3.40.950.20 260 480 5.9E-44 T 13-10-2018 CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 220 454 3.2E-65 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 SUPERFAMILY SSF54862 131 209 1.47E-19 T 13-10-2018 CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 Gene3D G3DSA:3.30.70.20 162 208 2.9E-13 T 13-10-2018 CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 Pfam PF00037 4Fe-4S binding domain 135 156 1.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 Gene3D G3DSA:3.30.70.20 103 161 5.3E-12 T 13-10-2018 CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 TIGRFAM TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3 4 459 5.8E-189 T 13-10-2018 IPR027631 [FeFe] hydrogenase, group B1/B3 CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 Pfam PF12838 4Fe-4S dicluster domain 163 202 9.1E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3736 82a0a12c023ba5313dc95792dba09c0a 497 SUPERFAMILY SSF53920 187 460 4.97E-71 T 13-10-2018 IPR009016 Iron hydrogenase CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 TIGRFAM TIGR02869 spore_SleB: spore cortex-lytic enzyme 34 231 3.9E-99 T 13-10-2018 IPR014224 Spore cortex-lytic enzyme SleB GO:0003824|GO:0009847 CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 SUPERFAMILY SSF47090 40 103 4.71E-21 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 Gene3D G3DSA:1.10.101.10 33 110 8.0E-22 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 Gene3D G3DSA:2.40.10.420 196 231 7.9E-20 T 13-10-2018 CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 Gene3D G3DSA:1.10.10.2520 116 195 1.6E-31 T 13-10-2018 CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 Pfam PF01471 Putative peptidoglycan binding domain 46 101 5.8E-18 T 13-10-2018 IPR002477 Peptidoglycan binding-like CLM_0254 97461f5b57ce4560436a8ee7e09fb88f 231 Pfam PF07486 Cell Wall Hydrolase 132 230 2.3E-28 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 SUPERFAMILY SSF46955 2 104 2.71E-25 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 Gene3D G3DSA:3.20.80.10 126 263 5.5E-16 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 Gene3D G3DSA:1.10.1660.10 1 125 8.3E-26 T 13-10-2018 CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 Pfam PF13411 MerR HTH family regulatory protein 2 70 4.7E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 SMART SM00871 121 262 4.4E-9 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 Pfam PF06445 GyrI-like small molecule binding domain 121 261 3.8E-10 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 SUPERFAMILY SSF55136 122 248 1.12E-11 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_3872 f5de127511d3c9ed285175f6fd3de319 264 SMART SM00422 2 72 1.1E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 SMART SM00342 201 283 2.3E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 283 4.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 267 4.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 Gene3D G3DSA:1.10.10.60 178 234 2.0E-17 T 13-10-2018 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 Gene3D G3DSA:1.10.10.60 235 288 5.2E-15 T 13-10-2018 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 SUPERFAMILY SSF51215 31 167 1.06E-12 T 13-10-2018 IPR037923 Transcription regulator HTH-like CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 Pfam PF02311 AraC-like ligand binding domain 26 99 3.2E-7 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 SUPERFAMILY SSF46689 238 287 3.54E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 Gene3D G3DSA:2.60.120.10 8 107 8.6E-12 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 SUPERFAMILY SSF46689 184 236 3.4E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0668 eabe5dcba77f73c0423e363bd30d1782 289 Pfam PF12833 Helix-turn-helix domain 208 284 1.8E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 180 19.729 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 Pfam PF01386 Ribosomal L25p family 6 89 3.5E-13 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 Gene3D G3DSA:2.170.120.20 94 186 2.7E-14 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 SUPERFAMILY SSF50715 12 178 1.01E-38 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 Gene3D G3DSA:2.40.240.10 4 92 6.0E-16 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 92 4.0E-8 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 98 177 3.0E-15 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain CLM_3629 6bf7c354d7341c5bf4e9113482ea69a6 189 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 14 177 2.9E-30 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_1382 1112540b5ad185591f6a27f53867f8b5 317 Gene3D G3DSA:1.10.3720.10 85 307 1.0E-25 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1382 1112540b5ad185591f6a27f53867f8b5 317 SUPERFAMILY SSF161098 90 301 9.81E-22 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1382 1112540b5ad185591f6a27f53867f8b5 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 313 1.0E-47 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 SUPERFAMILY SSF51445 37 500 6.74E-135 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1356 f0afd3edc3a77090f49095b385df047f 542 Gene3D G3DSA:3.20.20.80 36 449 2.8E-145 T 13-10-2018 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 Gene3D G3DSA:2.60.40.10 450 542 2.0E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 90 108 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 373 395 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 69 83 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 336 359 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 112 133 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 268 287 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 324 335 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 305 321 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 194 216 1.7E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00841 Bacterial beta-amylase signature 244 261 2.6E-28 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00841 Bacterial beta-amylase signature 135 154 2.6E-28 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00841 Bacterial beta-amylase signature 228 243 2.6E-28 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 PRINTS PR00841 Bacterial beta-amylase signature 411 432 2.6E-28 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 SMART SM01065 448 541 1.8E-17 T 13-10-2018 IPR002044 Carbohydrate binding module family 20 GO:2001070 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 Pfam PF00686 Starch binding domain 449 538 8.4E-16 T 13-10-2018 IPR002044 Carbohydrate binding module family 20 GO:2001070 CLM_1356 f0afd3edc3a77090f49095b385df047f 542 Pfam PF01373 Glycosyl hydrolase family 14 45 440 1.3E-161 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 26 37 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 TIGRFAM TIGR04119 CXXX_matur: CXXX repeat peptide maturase 496 701 1.3E-80 T 13-10-2018 IPR026401 CXXX repeat peptide maturase CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 TIGRFAM TIGR04115 rSAM_Cxxx_rpt: radical SAM peptide maturase, CXXX-repeat target family 21 377 2.9E-156 T 13-10-2018 IPR026412 Radical SAM peptide maturase, CXXX-repeat target CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 270 357 1.6E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 SUPERFAMILY SSF102114 22 340 2.62E-33 T 13-10-2018 CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 Gene3D G3DSA:3.20.20.70 455 675 3.3E-5 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 Gene3D G3DSA:3.20.20.70 19 378 6.9E-57 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 Pfam PF04055 Radical SAM superfamily 26 179 5.8E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3777 0b935e23f403aec96ee1d3e88c127559 715 Pfam PF13353 4Fe-4S single cluster domain 22 163 1.8E-8 T 13-10-2018 CLM_4096 722bfd2e598448310495496d676a0238 326 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 324 9.5E-31 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_4096 722bfd2e598448310495496d676a0238 326 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 6.7E-30 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_4096 722bfd2e598448310495496d676a0238 326 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 323 1.5E-114 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_4096 722bfd2e598448310495496d676a0238 326 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 324 67.67 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_4096 722bfd2e598448310495496d676a0238 326 SUPERFAMILY SSF53901 4 324 1.81E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_4096 722bfd2e598448310495496d676a0238 326 Gene3D G3DSA:3.40.47.10 2 326 8.0E-125 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Gene3D G3DSA:3.30.230.70 1 228 1.8E-71 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Pfam PF00013 KH domain 555 613 2.7E-6 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 693 29.004 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF54211 290 486 1.42E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 691 4.9E-290 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Gene3D G3DSA:2.40.50.140 622 692 3.4E-26 T 13-10-2018 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Pfam PF03725 3' exoribonuclease family, domain 2 145 207 3.3E-13 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF55666 136 228 2.49E-25 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Pfam PF01138 3' exoribonuclease family, domain 1 12 142 5.5E-14 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Pfam PF01138 3' exoribonuclease family, domain 1 320 453 1.4E-19 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 239 317 2.0E-18 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SMART SM00316 620 690 3.6E-23 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF50249 609 693 1.11E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 PIRSF PIRSF005499 1 702 1.4E-277 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF54791 551 629 4.17E-15 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Gene3D G3DSA:3.30.230.70 232 548 1.1E-115 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SMART SM00322 551 617 1.4E-9 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF55666 447 548 9.03E-25 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Gene3D G3DSA:3.30.1370.10 549 621 1.2E-15 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF46915 237 317 3.14E-19 T 13-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 SUPERFAMILY SSF54211 4 142 2.43E-40 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2705 93b3fee157d4fbf1b066a584c17bf8b1 702 Pfam PF00575 S1 RNA binding domain 621 690 9.1E-18 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_2232 d4af3075a22d8eddadca9e2054eee00e 383 Gene3D G3DSA:3.90.1150.10 24 381 8.1E-119 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2232 d4af3075a22d8eddadca9e2054eee00e 383 SUPERFAMILY SSF53383 17 383 2.15E-104 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2232 d4af3075a22d8eddadca9e2054eee00e 383 Gene3D G3DSA:3.40.640.10 49 286 8.1E-119 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2232 d4af3075a22d8eddadca9e2054eee00e 383 Pfam PF00155 Aminotransferase class I and II 30 379 1.7E-68 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 Gene3D G3DSA:3.90.550.10 2 126 1.5E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3095 a27357a3040f9fda8db4791585683f7b 641 SUPERFAMILY SSF53448 6 107 3.31E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3095 a27357a3040f9fda8db4791585683f7b 641 Gene3D G3DSA:1.25.40.10 183 398 2.5E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 SUPERFAMILY SSF48452 201 358 1.61E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 SMART SM00028 248 281 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 SMART SM00028 282 315 41.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 SMART SM00028 592 625 280.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 SMART SM00028 208 241 18.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3095 a27357a3040f9fda8db4791585683f7b 641 Pfam PF00535 Glycosyl transferase family 2 12 100 9.7E-15 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_1325 8a7b6fc4fea04322474a01b3ad1cfd88 168 Pfam PF00583 Acetyltransferase (GNAT) family 44 133 3.4E-14 T 13-10-2018 IPR000182 GNAT domain CLM_1325 8a7b6fc4fea04322474a01b3ad1cfd88 168 SUPERFAMILY SSF55729 25 143 3.49E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1325 8a7b6fc4fea04322474a01b3ad1cfd88 168 Gene3D G3DSA:3.40.630.30 48 146 1.4E-22 T 13-10-2018 CLM_1176 c4745ca7cf527cacf52f456577a5537b 187 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 56 78 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CLM_1176 c4745ca7cf527cacf52f456577a5537b 187 Pfam PF01066 CDP-alcohol phosphatidyltransferase 7 78 1.9E-13 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CLM_1176 c4745ca7cf527cacf52f456577a5537b 187 PIRSF PIRSF000847 2 187 7.9E-24 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CLM_1176 c4745ca7cf527cacf52f456577a5537b 187 Gene3D G3DSA:1.20.120.1760 4 186 2.8E-13 T 13-10-2018 CLM_2725 962efe4f6990cb4096f9da37144552ae 184 SUPERFAMILY SSF55194 3 182 2.35E-70 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 CLM_2725 962efe4f6990cb4096f9da37144552ae 184 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 184 1.4E-69 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CLM_2725 962efe4f6990cb4096f9da37144552ae 184 Gene3D G3DSA:1.10.132.20 12 181 3.9E-68 T 13-10-2018 CLM_2725 962efe4f6990cb4096f9da37144552ae 184 Gene3D G3DSA:3.30.1360.40 31 105 3.9E-68 T 13-10-2018 CLM_2725 962efe4f6990cb4096f9da37144552ae 184 Pfam PF01765 Ribosome recycling factor 20 182 1.2E-66 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CLM_2725 962efe4f6990cb4096f9da37144552ae 184 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 184 27.765 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CLM_4095 6b1ac9e98eedb14c1989b5eb17bd7caf 74 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 71 4.0E-22 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CLM_4095 6b1ac9e98eedb14c1989b5eb17bd7caf 74 SUPERFAMILY SSF47336 2 73 3.01E-18 T 13-10-2018 IPR036736 ACP-like superfamily CLM_4095 6b1ac9e98eedb14c1989b5eb17bd7caf 74 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 33 72 2.0E-8 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CLM_4095 6b1ac9e98eedb14c1989b5eb17bd7caf 74 Hamap MF_01217 Acyl carrier protein [acpP]. 1 72 18.322 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CLM_4095 6b1ac9e98eedb14c1989b5eb17bd7caf 74 Pfam PF00550 Phosphopantetheine attachment site 4 68 1.1E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_4095 6b1ac9e98eedb14c1989b5eb17bd7caf 74 Gene3D G3DSA:1.10.1200.10 1 74 3.5E-21 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2086 e27ed0c05a1d2ed66398a371f17c167e 162 Gene3D G3DSA:1.10.10.10 10 108 2.0E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2086 e27ed0c05a1d2ed66398a371f17c167e 162 SUPERFAMILY SSF46785 28 76 2.44E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2086 e27ed0c05a1d2ed66398a371f17c167e 162 Pfam PF13730 Helix-turn-helix domain 17 70 2.2E-7 T 13-10-2018 CLM_0454 60a3ce4a938dd838d3a8a74174df9761 303 Gene3D G3DSA:3.40.190.10 44 300 6.5E-59 T 13-10-2018 CLM_0454 60a3ce4a938dd838d3a8a74174df9761 303 Gene3D G3DSA:3.40.190.10 129 265 6.5E-59 T 13-10-2018 CLM_0454 60a3ce4a938dd838d3a8a74174df9761 303 Pfam PF12849 PBP superfamily domain 33 288 5.7E-30 T 13-10-2018 IPR024370 PBP domain CLM_0454 60a3ce4a938dd838d3a8a74174df9761 303 SUPERFAMILY SSF53850 43 302 4.43E-58 T 13-10-2018 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 685 17.225 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 107 686 6.9E-261 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 SUPERFAMILY SSF50447 359 442 6.09E-28 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 SUPERFAMILY SSF52156 465 594 1.16E-38 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Gene3D G3DSA:2.40.30.10 589 686 1.5E-32 T 13-10-2018 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 110 158 5.8E-11 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 2 49 1.4E-15 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Pfam PF00009 Elongation factor Tu GTP binding domain 189 347 3.1E-35 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 SUPERFAMILY SSF52540 171 359 1.08E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Pfam PF11987 Translation-initiation factor 2 472 577 2.5E-38 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Gene3D G3DSA:1.10.10.2480 1 68 3.7E-22 T 13-10-2018 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Gene3D G3DSA:3.40.50.300 184 358 3.8E-74 T 13-10-2018 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 SUPERFAMILY SSF50447 589 685 5.61E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 ProSitePatterns PS01176 Initiation factor 2 signature. 638 660 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 191 346 3.0E-36 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Gene3D G3DSA:3.40.50.10050 481 588 2.4E-39 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CLM_2711 cee8184cc8df0c146ebc28228455cb15 688 Gene3D G3DSA:2.40.30.10 359 476 1.7E-43 T 13-10-2018 CLM_2160 ed610611da031e96e1ed60fabb113627 162 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 65 78 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CLM_2160 ed610611da031e96e1ed60fabb113627 162 Gene3D G3DSA:3.40.980.10 1 162 4.8E-58 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_2160 ed610611da031e96e1ed60fabb113627 162 SMART SM00852 5 149 4.1E-31 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2160 ed610611da031e96e1ed60fabb113627 162 PIRSF PIRSF006443 1 156 1.6E-41 T 13-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 CLM_2160 ed610611da031e96e1ed60fabb113627 162 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 142 3.3E-38 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2160 ed610611da031e96e1ed60fabb113627 162 Pfam PF00994 Probable molybdopterin binding domain 5 148 1.7E-36 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_2160 ed610611da031e96e1ed60fabb113627 162 SUPERFAMILY SSF53218 2 152 3.01E-46 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_4131 b48581c832fb9841519b63039df35f0c 80 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 28 80 3.0E-23 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 Pfam PF01084 Ribosomal protein S18 25 75 1.9E-28 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 PRINTS PR00974 Ribosomal protein S18 family signature 53 67 3.6E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 PRINTS PR00974 Ribosomal protein S18 family signature 35 45 3.6E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 PRINTS PR00974 Ribosomal protein S18 family signature 45 52 3.6E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 PRINTS PR00974 Ribosomal protein S18 family signature 67 77 3.6E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 TIGRFAM TIGR00165 S18: ribosomal protein bS18 13 79 5.9E-34 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 Gene3D G3DSA:4.10.640.10 2 80 2.3E-32 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 4 80 22.89 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 ProSitePatterns PS00057 Ribosomal protein S18 signature. 28 51 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4131 b48581c832fb9841519b63039df35f0c 80 SUPERFAMILY SSF46911 7 79 4.84E-30 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2059 ab26fb03854a46121e00606c22a21f53 153 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 41 148 3.5E-18 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CLM_2059 ab26fb03854a46121e00606c22a21f53 153 Pfam PF05119 Phage terminase, small subunit 51 139 3.8E-13 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CLM_2762 73d33eb092bb063523e13a7287a3a7de 298 Pfam PF01925 Sulfite exporter TauE/SafE 4 147 5.5E-12 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_2762 73d33eb092bb063523e13a7287a3a7de 298 Pfam PF01925 Sulfite exporter TauE/SafE 173 284 2.3E-8 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_0310 e4c6665a03a9932bb65f86cdd138465a 224 Gene3D G3DSA:3.40.50.850 42 110 2.3E-6 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CLM_0310 e4c6665a03a9932bb65f86cdd138465a 224 Gene3D G3DSA:3.40.50.850 111 213 2.3E-19 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CLM_0310 e4c6665a03a9932bb65f86cdd138465a 224 Pfam PF00857 Isochorismatase family 65 202 1.8E-28 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CLM_0310 e4c6665a03a9932bb65f86cdd138465a 224 SUPERFAMILY SSF52499 46 203 5.1E-29 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CLM_0240 22212793b3f8c8464c2569803bcd9aeb 179 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 23 140 7.0E-40 T 13-10-2018 CLM_0240 22212793b3f8c8464c2569803bcd9aeb 179 Pfam PF01928 CYTH domain 2 167 3.1E-22 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CLM_0240 22212793b3f8c8464c2569803bcd9aeb 179 Gene3D G3DSA:2.40.320.10 3 174 1.2E-24 T 13-10-2018 CLM_0240 22212793b3f8c8464c2569803bcd9aeb 179 SUPERFAMILY SSF55154 3 173 6.54E-30 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 CLM_0240 22212793b3f8c8464c2569803bcd9aeb 179 SMART SM01118 1 175 2.8E-7 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CLM_3607 3728eda59174d71ff8be16fd599ab053 324 SUPERFAMILY SSF53067 2 254 4.95E-37 T 13-10-2018 CLM_3607 3728eda59174d71ff8be16fd599ab053 324 Gene3D G3DSA:3.30.420.40 97 237 7.0E-85 T 13-10-2018 CLM_3607 3728eda59174d71ff8be16fd599ab053 324 Gene3D G3DSA:3.30.420.40 4 254 7.0E-85 T 13-10-2018 CLM_3607 3728eda59174d71ff8be16fd599ab053 324 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 3 253 1.3E-51 T 13-10-2018 IPR008275 CoA enzyme activase CLM_3607 3728eda59174d71ff8be16fd599ab053 324 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 254 1.6E-40 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_1594 19e479fb09b36d251382f0635326b24f 392 Pfam PF01546 Peptidase family M20/M25/M40 73 385 3.1E-34 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_1594 19e479fb09b36d251382f0635326b24f 392 Gene3D G3DSA:3.30.70.360 183 297 2.0E-132 T 13-10-2018 CLM_1594 19e479fb09b36d251382f0635326b24f 392 SUPERFAMILY SSF55031 188 292 3.14E-30 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_1594 19e479fb09b36d251382f0635326b24f 392 Pfam PF07687 Peptidase dimerisation domain 188 284 8.1E-14 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_1594 19e479fb09b36d251382f0635326b24f 392 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 378 3.1E-108 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 CLM_1594 19e479fb09b36d251382f0635326b24f 392 SUPERFAMILY SSF53187 8 391 5.97E-78 T 13-10-2018 CLM_1594 19e479fb09b36d251382f0635326b24f 392 PIRSF PIRSF005962 2 392 2.0E-122 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 CLM_1594 19e479fb09b36d251382f0635326b24f 392 Gene3D G3DSA:3.40.630.10 17 375 2.0E-132 T 13-10-2018 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 Gene3D G3DSA:3.30.1490.110 88 179 9.2E-40 T 13-10-2018 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 SUPERFAMILY SSF53067 13 206 1.6E-24 T 13-10-2018 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 Gene3D G3DSA:3.30.420.40 207 352 9.2E-40 T 13-10-2018 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 SUPERFAMILY SSF53067 215 382 1.3E-26 T 13-10-2018 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 Gene3D G3DSA:3.30.420.40 15 355 9.2E-40 T 13-10-2018 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 Pfam PF06723 MreB/Mbl protein 201 353 1.2E-11 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 SMART SM00842 12 206 1.3E-48 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CLM_1593 373cb31454499ca6cf0a3a5490167cb1 742 Gene3D G3DSA:3.90.640.10 245 301 9.2E-40 T 13-10-2018 CLM_3567 c7a3fa5905b94c5f3c82e1503110d0ab 387 Gene3D G3DSA:3.90.1150.10 33 380 9.8E-121 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_3567 c7a3fa5905b94c5f3c82e1503110d0ab 387 Pfam PF00155 Aminotransferase class I and II 33 379 5.1E-67 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_3567 c7a3fa5905b94c5f3c82e1503110d0ab 387 SUPERFAMILY SSF53383 10 384 3.82E-111 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3567 c7a3fa5905b94c5f3c82e1503110d0ab 387 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CLM_3567 c7a3fa5905b94c5f3c82e1503110d0ab 387 Gene3D G3DSA:3.40.640.10 63 283 9.8E-121 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 SUPERFAMILY SSF53850 51 342 2.57E-63 T 13-10-2018 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 Gene3D G3DSA:3.40.190.10 142 326 2.4E-85 T 13-10-2018 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 62 83 3.1E-6 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 159 173 3.1E-6 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 255 274 3.1E-6 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 Pfam PF13343 Bacterial extracellular solute-binding protein 89 299 1.0E-39 T 13-10-2018 CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 PIRSF PIRSF002825 1 346 1.3E-100 T 13-10-2018 IPR026045 Ferric binding protein CLM_1305 ea7bbc30d329be95bca33188faba5b99 348 Gene3D G3DSA:3.40.190.10 50 314 2.4E-85 T 13-10-2018 CLM_4062 e215a886b2790109646fd1471cc8b353 159 SUPERFAMILY SSF75217 1 157 3.09E-60 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CLM_4062 e215a886b2790109646fd1471cc8b353 159 Pfam PF02590 Predicted SPOUT methyltransferase 1 158 3.4E-61 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CLM_4062 e215a886b2790109646fd1471cc8b353 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 31.754 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CLM_4062 e215a886b2790109646fd1471cc8b353 159 PIRSF PIRSF004505 1 159 5.3E-59 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CLM_4062 e215a886b2790109646fd1471cc8b353 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 159 6.1E-54 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CLM_4062 e215a886b2790109646fd1471cc8b353 159 Gene3D G3DSA:3.40.1280.10 1 159 7.7E-67 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_1892 d8ec9c19c07082014f2956fab21c7587 53 Gene3D G3DSA:3.30.160.160 5 47 1.4E-11 T 13-10-2018 CLM_1892 d8ec9c19c07082014f2956fab21c7587 53 SUPERFAMILY SSF160113 6 45 7.33E-10 T 13-10-2018 IPR036913 YegP-like superfamily CLM_1892 d8ec9c19c07082014f2956fab21c7587 53 Pfam PF07411 Domain of unknown function (DUF1508) 13 42 4.8E-6 T 13-10-2018 IPR010879 Domain of unknown function DUF1508 CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 185 213 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 2.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 2.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 2.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 59 289 1.6E-59 T 13-10-2018 CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 Gene3D G3DSA:3.40.50.720 6 292 6.3E-83 T 13-10-2018 CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 236 9.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 188 9.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 137 9.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 51 68 9.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 253 273 9.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 217 9.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_1904 6974e4a8aae1cd2811b8ed6c021e01aa 294 SUPERFAMILY SSF51735 49 291 5.59E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 Gene3D G3DSA:1.10.3090.10 152 442 8.3E-64 T 13-10-2018 CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 SUPERFAMILY SSF81301 6 149 1.63E-40 T 13-10-2018 CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 SUPERFAMILY SSF81891 150 449 7.85E-54 T 13-10-2018 CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 179 240 6.9E-17 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 Pfam PF01743 Poly A polymerase head domain 29 152 3.1E-36 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 302 446 2.6E-10 T 13-10-2018 IPR032810 CCA-adding enzyme, C-terminal CLM_2616 2cbc28d2435240cd78eaf293e9040c6c 450 Gene3D G3DSA:3.30.460.10 10 151 1.4E-48 T 13-10-2018 CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 SMART SM01134 73 233 1.6E-66 T 13-10-2018 CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 Gene3D G3DSA:1.10.10.10 1 62 3.5E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 6.8E-52 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 SMART SM00420 6 58 7.7E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 SUPERFAMILY SSF100950 75 234 3.24E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 SUPERFAMILY SSF46785 5 78 2.84E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2411 56670eab7722d4c0db4c06a229e22ec9 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 1.2E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CLM_1837 295459cda530fcaa310f3351b9de96a0 112 Pfam PF12788 YmaF family 10 104 3.4E-40 T 13-10-2018 IPR024307 YmaF CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 Gene3D G3DSA:3.40.50.1860 97 208 4.7E-73 T 13-10-2018 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 205 2.2E-26 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 Gene3D G3DSA:3.40.50.1860 7 243 4.7E-73 T 13-10-2018 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 TIGRFAM TIGR00067 glut_race: glutamate racemase 8 242 4.3E-66 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 SUPERFAMILY SSF53681 111 255 1.87E-22 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 181 191 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 Hamap MF_00258 Glutamate racemase [murI]. 6 257 32.695 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 SUPERFAMILY SSF53681 7 107 8.5E-35 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4055 d7f9c40fb8416c4b018c27676842de57 257 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 72 80 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_2878 cbbb6b7af5bbafa501c5e65f8e8bc406 255 Pfam PF02811 PHP domain 3 185 7.8E-7 T 13-10-2018 IPR004013 PHP domain GO:0003824 CLM_2878 cbbb6b7af5bbafa501c5e65f8e8bc406 255 Gene3D G3DSA:3.20.20.140 1 252 3.2E-54 T 13-10-2018 CLM_2878 cbbb6b7af5bbafa501c5e65f8e8bc406 255 SUPERFAMILY SSF89550 1 252 1.22E-35 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_2878 cbbb6b7af5bbafa501c5e65f8e8bc406 255 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 2 228 1.1E-32 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 CLM_1049 ae08dd72d74e74467fb866225627ab10 223 Gene3D G3DSA:3.40.50.12740 2 140 8.8E-41 T 13-10-2018 CLM_1049 ae08dd72d74e74467fb866225627ab10 223 SMART SM00862 146 220 9.9E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1049 ae08dd72d74e74467fb866225627ab10 223 SUPERFAMILY SSF52172 1 179 2.7E-42 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1049 ae08dd72d74e74467fb866225627ab10 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 2.5E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1049 ae08dd72d74e74467fb866225627ab10 223 SMART SM00448 2 113 2.8E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1049 ae08dd72d74e74467fb866225627ab10 223 Pfam PF00072 Response regulator receiver domain 4 113 1.6E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1049 ae08dd72d74e74467fb866225627ab10 223 Gene3D G3DSA:1.10.10.10 141 223 1.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 ProSitePatterns PS00211 ABC transporters family signature. 669 683 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 SUPERFAMILY SSF52540 525 767 1.27E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 Gene3D G3DSA:1.20.1560.10 229 511 4.6E-66 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 Pfam PF00664 ABC transporter transmembrane region 257 484 9.7E-31 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 Pfam PF00005 ABC transporter 548 695 9.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 SMART SM00382 557 743 1.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 Gene3D G3DSA:3.40.50.300 522 773 2.5E-84 T 13-10-2018 CLM_2149 7e718b68ced9b87356a33dbbe25a9d20 775 SUPERFAMILY SSF90123 4 516 3.4E-67 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Gene3D G3DSA:1.10.8.60 447 523 5.6E-23 T 13-10-2018 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Gene3D G3DSA:1.10.10.60 524 584 9.9E-16 T 13-10-2018 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Gene3D G3DSA:3.30.450.20 137 259 3.0E-15 T 13-10-2018 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SUPERFAMILY SSF54631 9 135 3.28E-23 T 13-10-2018 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 361 376 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SMART SM00382 295 447 6.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Pfam PF00158 Sigma-54 interaction domain 275 442 4.9E-65 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SMART SM00091 137 203 8.5E-7 T 13-10-2018 IPR000014 PAS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SUPERFAMILY SSF46689 488 583 2.82E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 547 564 5.4E-9 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 564 584 5.4E-9 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SUPERFAMILY SSF55785 133 232 3.32E-12 T 13-10-2018 IPR035965 PAS domain superfamily CLM_2789 74afcc62857ab0eff07e932ba18528af 584 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 241 4.3E-8 T 13-10-2018 IPR000014 PAS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Pfam PF13426 PAS domain 148 240 3.1E-10 T 13-10-2018 IPR000014 PAS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Gene3D G3DSA:3.10.580.10 8 135 7.4E-23 T 13-10-2018 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Pfam PF02954 Bacterial regulatory protein, Fis family 542 581 1.2E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SMART SM00116 18 66 2.1 T 13-10-2018 IPR000644 CBS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SMART SM00116 82 129 1.4E-7 T 13-10-2018 IPR000644 CBS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 SUPERFAMILY SSF52540 275 518 4.11E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Pfam PF00571 CBS domain 80 124 3.3E-7 T 13-10-2018 IPR000644 CBS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Pfam PF00571 CBS domain 11 63 1.0E-5 T 13-10-2018 IPR000644 CBS domain CLM_2789 74afcc62857ab0eff07e932ba18528af 584 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 299 312 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLM_2789 74afcc62857ab0eff07e932ba18528af 584 Gene3D G3DSA:3.40.50.300 260 446 1.7E-63 T 13-10-2018 CLM_1192 19477f0230d6253ab533c40ef4943152 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 288 3.7E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1192 19477f0230d6253ab533c40ef4943152 451 SMART SM00387 341 451 1.4E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1192 19477f0230d6253ab533c40ef4943152 451 SMART SM00388 230 294 5.3E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1192 19477f0230d6253ab533c40ef4943152 451 SUPERFAMILY SSF55874 305 448 7.2E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1192 19477f0230d6253ab533c40ef4943152 451 SUPERFAMILY SSF47384 215 293 1.67E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1192 19477f0230d6253ab533c40ef4943152 451 Gene3D G3DSA:3.30.565.10 300 451 1.6E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1192 19477f0230d6253ab533c40ef4943152 451 Gene3D G3DSA:1.10.287.130 174 286 2.2E-15 T 13-10-2018 CLM_1192 19477f0230d6253ab533c40ef4943152 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 392 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1192 19477f0230d6253ab533c40ef4943152 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 406 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1192 19477f0230d6253ab533c40ef4943152 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1192 19477f0230d6253ab533c40ef4943152 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1192 19477f0230d6253ab533c40ef4943152 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 448 1.5E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3819 5801447c0b8accdcffee0fc25230d368 140 SMART SM00422 3 72 1.3E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_3819 5801447c0b8accdcffee0fc25230d368 140 SUPERFAMILY SSF46955 3 117 1.25E-31 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_3819 5801447c0b8accdcffee0fc25230d368 140 Pfam PF13411 MerR HTH family regulatory protein 3 68 5.5E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_3819 5801447c0b8accdcffee0fc25230d368 140 Gene3D G3DSA:1.10.1660.10 1 128 1.3E-34 T 13-10-2018 CLM_2392 58c3eda94cb67c573cbe6424ccd36d68 244 Pfam PF00069 Protein kinase domain 21 170 8.8E-27 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CLM_2392 58c3eda94cb67c573cbe6424ccd36d68 244 Gene3D G3DSA:1.10.510.10 6 212 8.7E-30 T 13-10-2018 CLM_2392 58c3eda94cb67c573cbe6424ccd36d68 244 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 27 48 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 CLM_2392 58c3eda94cb67c573cbe6424ccd36d68 244 SMART SM00220 21 236 3.3E-10 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CLM_2392 58c3eda94cb67c573cbe6424ccd36d68 244 SUPERFAMILY SSF56112 17 209 1.04E-33 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_3756 bc567591b018dfc26765315002a9fa71 152 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 7 124 1.7E-37 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CLM_3756 bc567591b018dfc26765315002a9fa71 152 SUPERFAMILY SSF52540 18 121 1.54E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3756 bc567591b018dfc26765315002a9fa71 152 Gene3D G3DSA:3.40.50.300 2 148 5.0E-40 T 13-10-2018 CLM_3756 bc567591b018dfc26765315002a9fa71 152 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 127 4.7E-38 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CLM_3805 68625d44abd73be08be6e07d18e5025d 103 SUPERFAMILY SSF52794 1 102 1.1E-36 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CLM_3805 68625d44abd73be08be6e07d18e5025d 103 TIGRFAM TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component 2 95 4.2E-33 T 13-10-2018 IPR013012 Phosphotransferase system, EIIB component, type 3 GO:0008982|GO:0009401 CLM_3805 68625d44abd73be08be6e07d18e5025d 103 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 94 2.4E-23 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CLM_3805 68625d44abd73be08be6e07d18e5025d 103 Gene3D G3DSA:3.40.50.2300 2 103 3.5E-38 T 13-10-2018 CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 Gene3D G3DSA:3.30.300.20 58 141 2.1E-27 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 Pfam PF13083 KH domain 62 131 8.4E-21 T 13-10-2018 CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 SMART SM00393 127 206 5.4E-19 T 13-10-2018 IPR001374 R3H domain GO:0003676 CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 SMART SM01245 5 57 1.3E-25 T 13-10-2018 IPR032782 Jag, N-terminal CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 Gene3D G3DSA:3.30.1370.50 142 208 9.1E-31 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 Gene3D G3DSA:3.30.30.80 1 57 7.1E-21 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 Pfam PF14804 Jag N-terminus 7 55 2.6E-21 T 13-10-2018 IPR032782 Jag, N-terminal CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 Pfam PF01424 R3H domain 145 204 5.5E-18 T 13-10-2018 IPR001374 R3H domain GO:0003676 CLM_4149 df0c13eb9e92f82e18cba66d29a4f79d 208 SUPERFAMILY SSF82708 148 203 5.62E-9 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 CLM_3631 a4f47ea482d5105981484d311ab11dea 142 Gene3D G3DSA:1.10.10.10 1 82 1.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3631 a4f47ea482d5105981484d311ab11dea 142 Pfam PF01475 Ferric uptake regulator family 10 128 7.5E-32 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CLM_3631 a4f47ea482d5105981484d311ab11dea 142 Gene3D G3DSA:3.30.1490.190 83 142 6.1E-14 T 13-10-2018 CLM_3631 a4f47ea482d5105981484d311ab11dea 142 SUPERFAMILY SSF46785 4 132 1.4E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3726 d3620eaa669d89da73689af9a9b68aeb 543 ProSitePatterns PS00455 Putative AMP-binding domain signature. 189 200 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_3726 d3620eaa669d89da73689af9a9b68aeb 543 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 523 2.1E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CLM_3726 d3620eaa669d89da73689af9a9b68aeb 543 Gene3D G3DSA:3.30.300.30 435 538 2.5E-31 T 13-10-2018 CLM_3726 d3620eaa669d89da73689af9a9b68aeb 543 SUPERFAMILY SSF56801 4 534 1.14E-135 T 13-10-2018 CLM_3726 d3620eaa669d89da73689af9a9b68aeb 543 Pfam PF00501 AMP-binding enzyme 13 439 4.5E-94 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_3726 d3620eaa669d89da73689af9a9b68aeb 543 Gene3D G3DSA:3.40.50.12780 3 434 1.1E-103 T 13-10-2018 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 SMART SM00278 149 168 6.0E-4 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 SMART SM00278 179 198 5.6 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 Pfam PF10531 SLBB domain 61 114 3.4E-14 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 SUPERFAMILY SSF47781 136 198 9.0E-25 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 Gene3D G3DSA:1.10.150.310 149 202 1.4E-13 T 13-10-2018 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 Pfam PF12836 Helix-hairpin-helix motif 139 197 2.3E-21 T 13-10-2018 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 Gene3D G3DSA:3.10.560.10 36 148 3.4E-7 T 13-10-2018 CLM_3373 ede77d15cd1c84bf086c65ee6ed3d79c 202 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 139 198 2.0E-16 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain CLM_3035 1d211a3a6ce219f96c000c3129369989 397 Hamap MF_00005 Argininosuccinate synthase [argG]. 2 397 51.434 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 116 127 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 Pfam PF00764 Arginosuccinate synthase 6 391 2.1E-158 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 Gene3D G3DSA:3.90.1260.10 63 349 4.7E-150 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 Gene3D G3DSA:3.40.50.620 5 172 4.7E-150 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3035 1d211a3a6ce219f96c000c3129369989 397 TIGRFAM TIGR00032 argG: argininosuccinate synthase 4 391 6.5E-150 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 SUPERFAMILY SSF52402 2 203 6.84E-44 T 13-10-2018 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 8 16 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 SUPERFAMILY SSF69864 171 395 5.76E-89 T 13-10-2018 CLM_3035 1d211a3a6ce219f96c000c3129369989 397 Gene3D G3DSA:1.20.5.470 373 396 6.2E-6 T 13-10-2018 CLM_3550 642de963816c67fb91c440d926e000a0 231 Pfam PF00005 ABC transporter 17 155 1.4E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3550 642de963816c67fb91c440d926e000a0 231 Gene3D G3DSA:3.40.50.300 1 230 2.3E-58 T 13-10-2018 CLM_3550 642de963816c67fb91c440d926e000a0 231 SMART SM00382 26 213 2.6E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3550 642de963816c67fb91c440d926e000a0 231 SUPERFAMILY SSF52540 2 219 4.88E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3550 642de963816c67fb91c440d926e000a0 231 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2525 dfb5a513416a45537521eb80e3b6ffb0 204 Pfam PF06810 Phage minor structural protein GP20 32 165 9.5E-39 T 13-10-2018 IPR009636 Capsid assembly scaffolding protein GO:0019069 CLM_2464 b042013a6a6c2901a011714497dfd252 145 Pfam PF13673 Acetyltransferase (GNAT) domain 47 140 1.0E-15 T 13-10-2018 IPR000182 GNAT domain CLM_2464 b042013a6a6c2901a011714497dfd252 145 Gene3D G3DSA:3.40.630.30 1 139 2.4E-25 T 13-10-2018 CLM_2464 b042013a6a6c2901a011714497dfd252 145 SUPERFAMILY SSF55729 1 140 3.49E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0313 364d3fdb116b39d6b0c2d394812fedd8 163 Gene3D G3DSA:3.30.465.10 4 75 1.7E-7 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_0313 364d3fdb116b39d6b0c2d394812fedd8 163 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 61 5.5E-5 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CLM_0313 364d3fdb116b39d6b0c2d394812fedd8 163 SUPERFAMILY SSF56176 1 71 2.13E-8 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 PIRSF PIRSF005023 1 628 1.3E-234 T 13-10-2018 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 SUPERFAMILY SSF56821 20 627 3.05E-155 T 13-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 Pfam PF03063 Prismane/CO dehydrogenase family 47 608 1.6E-144 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 10 627 2.0E-253 T 13-10-2018 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 Gene3D G3DSA:1.20.1270.30 61 232 1.7E-49 T 13-10-2018 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 Gene3D G3DSA:3.40.50.2030 234 411 1.5E-45 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_1506 2b50692e2ae7dab6ccdbb454efe1a533 628 Gene3D G3DSA:3.40.50.2030 413 628 1.1E-68 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 SUPERFAMILY SSF55620 3 192 2.45E-58 T 13-10-2018 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 4 195 34.838 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 73 89 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 Gene3D G3DSA:1.10.286.10 1 51 9.4E-19 T 13-10-2018 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 Pfam PF01227 GTP cyclohydrolase I 8 193 2.2E-68 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 Gene3D G3DSA:3.30.1130.10 64 196 5.5E-45 T 13-10-2018 CLM_1797 0b380712e6f6736e496910323c36ce4e 196 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 8 184 1.0E-57 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CLM_0209 05cae1ef0d8c22cf5992591876f5bb3d 240 Pfam PF01171 PP-loop family 24 200 2.9E-20 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CLM_0209 05cae1ef0d8c22cf5992591876f5bb3d 240 SUPERFAMILY SSF52402 2 214 2.18E-51 T 13-10-2018 CLM_0209 05cae1ef0d8c22cf5992591876f5bb3d 240 PIRSF PIRSF004976 1 240 9.1E-65 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 CLM_0209 05cae1ef0d8c22cf5992591876f5bb3d 240 Gene3D G3DSA:3.40.50.620 1 237 3.0E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3601 8b0426866724692936e5e6fa80d50a1f 442 Pfam PF07728 AAA domain (dynein-related subfamily) 87 214 4.2E-19 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 CLM_3601 8b0426866724692936e5e6fa80d50a1f 442 SUPERFAMILY SSF52540 46 338 4.01E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3601 8b0426866724692936e5e6fa80d50a1f 442 Gene3D G3DSA:3.40.50.300 51 267 4.1E-50 T 13-10-2018 CLM_3601 8b0426866724692936e5e6fa80d50a1f 442 SMART SM00382 84 222 0.0016 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 SUPERFAMILY SSF48310 210 603 6.28E-140 T 13-10-2018 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 SMART SM00790 4 206 4.5E-119 T 13-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 6 204 2.9E-79 T 13-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 SUPERFAMILY SSF56228 1 209 3.27E-75 T 13-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 224 600 3.9E-142 T 13-10-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 Gene3D G3DSA:1.10.569.10 241 427 4.8E-144 T 13-10-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 Gene3D G3DSA:3.60.9.10 1 210 6.4E-86 T 13-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily CLM_2153 6d58e25ef2c008b876743c2b7e57a6f8 605 Gene3D G3DSA:1.10.599.10 239 600 4.8E-144 T 13-10-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 74 9.8E-35 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 Pfam PF00550 Phosphopantetheine attachment site 4 71 3.4E-17 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 30 45 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 Hamap MF_01217 Acyl carrier protein [acpP]. 1 75 23.244 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 33 74 7.0E-11 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 Gene3D G3DSA:1.10.1200.10 1 77 2.5E-30 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2749 f72527e4dbc0517de67145be9db81ab1 77 SUPERFAMILY SSF47336 2 74 5.5E-24 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2425 a99ea0e91865c6428e20844ee727dedc 212 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 32 193 4.1E-28 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CLM_2425 a99ea0e91865c6428e20844ee727dedc 212 PIRSF PIRSF005624 1 211 9.5E-77 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 CLM_2425 a99ea0e91865c6428e20844ee727dedc 212 SUPERFAMILY SSF52540 2 210 4.7E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2425 a99ea0e91865c6428e20844ee727dedc 212 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 2 210 2.8E-73 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 CLM_2425 a99ea0e91865c6428e20844ee727dedc 212 Gene3D G3DSA:3.40.50.300 12 212 8.1E-58 T 13-10-2018 CLM_2425 a99ea0e91865c6428e20844ee727dedc 212 SMART SM00382 29 184 0.0012 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1120 03542acbce6a48ffc1cc38e1ba8908b0 340 Pfam PF01497 Periplasmic binding protein 76 311 3.5E-25 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_1120 03542acbce6a48ffc1cc38e1ba8908b0 340 Gene3D G3DSA:3.40.50.1980 166 339 1.9E-52 T 13-10-2018 CLM_1120 03542acbce6a48ffc1cc38e1ba8908b0 340 Gene3D G3DSA:3.40.50.1980 49 164 3.2E-35 T 13-10-2018 CLM_1120 03542acbce6a48ffc1cc38e1ba8908b0 340 SUPERFAMILY SSF53807 63 340 1.26E-45 T 13-10-2018 CLM_1814 20c587445f95ea47dfdb98f24c99f4e4 110 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 106 7.0E-20 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CLM_1814 20c587445f95ea47dfdb98f24c99f4e4 110 Gene3D G3DSA:3.10.20.400 2 97 1.5E-41 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 CLM_1814 20c587445f95ea47dfdb98f24c99f4e4 110 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 106 1.3E-36 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CLM_1814 20c587445f95ea47dfdb98f24c99f4e4 110 SUPERFAMILY SSF141734 6 108 6.54E-49 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 CLM_1814 20c587445f95ea47dfdb98f24c99f4e4 110 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 110 31.046 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CLM_1597 85b1975d072a6c4f1ce57a22f6646172 535 PIRSF PIRSF038958 1 525 5.2E-101 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLM_1597 85b1975d072a6c4f1ce57a22f6646172 535 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 358 508 4.5E-20 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_1597 85b1975d072a6c4f1ce57a22f6646172 535 Pfam PF01943 Polysaccharide biosynthesis protein 7 305 4.0E-28 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 143 159 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 SUPERFAMILY SSF55124 5 80 8.83E-17 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 SUPERFAMILY SSF56014 101 305 2.62E-34 T 13-10-2018 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 SUPERFAMILY SSF54862 145 226 6.77E-18 T 13-10-2018 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 20 79 2.8E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 204 215 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 PRINTS PR00397 Sirohaem Fe-binding site signature 102 120 7.4E-7 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 PRINTS PR00397 Sirohaem Fe-binding site signature 143 161 7.4E-7 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 98 300 2.9E-28 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 Pfam PF13187 4Fe-4S dicluster domain 171 218 1.0E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 Gene3D G3DSA:3.90.480.20 4 102 4.2E-10 T 13-10-2018 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 Gene3D G3DSA:3.30.70.20 167 221 7.3E-11 T 13-10-2018 CLM_1110 f2598e2468a79e8240f62d0ce4163d4b 321 TIGRFAM TIGR02912 sulfite_red_C: sulfite reductase, subunit C 2 315 5.9E-185 T 13-10-2018 IPR014261 Sulphite reductase, subunit C CLM_3283 b2035a1fe66c1942153a796a28e5463b 468 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 353 373 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CLM_3283 b2035a1fe66c1942153a796a28e5463b 468 TIGRFAM TIGR03173 pbuX: xanthine permease 24 438 7.0E-163 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 CLM_3283 b2035a1fe66c1942153a796a28e5463b 468 Pfam PF00860 Permease family 20 405 6.8E-102 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_3283 b2035a1fe66c1942153a796a28e5463b 468 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 18 435 4.8E-114 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CLM_0933 56053a31fb97f69a1928c8dfb4d06bc5 230 SMART SM00382 32 218 4.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0933 56053a31fb97f69a1928c8dfb4d06bc5 230 Gene3D G3DSA:3.40.50.300 1 228 2.4E-69 T 13-10-2018 CLM_0933 56053a31fb97f69a1928c8dfb4d06bc5 230 Pfam PF00005 ABC transporter 23 169 1.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0933 56053a31fb97f69a1928c8dfb4d06bc5 230 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0933 56053a31fb97f69a1928c8dfb4d06bc5 230 SUPERFAMILY SSF52540 3 221 1.27E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0573 a4a5039b9273ab5bb54d8489dd988beb 318 SUPERFAMILY SSF55469 121 315 2.92E-22 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_0573 a4a5039b9273ab5bb54d8489dd988beb 318 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 139 314 1.7E-60 T 13-10-2018 IPR020051 SagB-type dehydrogenase domain CLM_0573 a4a5039b9273ab5bb54d8489dd988beb 318 Pfam PF00881 Nitroreductase family 124 314 7.8E-27 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_0573 a4a5039b9273ab5bb54d8489dd988beb 318 Gene3D G3DSA:3.40.109.10 89 314 3.9E-48 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_1216 c45fd05883406b076c2147b1ff3ecf72 331 Pfam PF11728 Putative aromatic acid exporter C-terminal domain 146 311 3.2E-53 T 13-10-2018 IPR021062 Putative aromatic acid exporter, C-terminal CLM_1216 c45fd05883406b076c2147b1ff3ecf72 331 Gene3D G3DSA:1.20.120.940 141 316 5.7E-54 T 13-10-2018 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily CLM_1216 c45fd05883406b076c2147b1ff3ecf72 331 Pfam PF06081 Aromatic acid exporter family member 1 3 142 1.4E-49 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 CLM_3598 cf06e4ce813d05553f37c3f865d03510 242 SUPERFAMILY SSF52113 160 232 3.18E-10 T 13-10-2018 IPR036420 BRCT domain superfamily CLM_3598 cf06e4ce813d05553f37c3f865d03510 242 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 164 230 1.6E-7 T 13-10-2018 IPR001357 BRCT domain CLM_3598 cf06e4ce813d05553f37c3f865d03510 242 SMART SM00292 158 234 0.0012 T 13-10-2018 IPR001357 BRCT domain CLM_3598 cf06e4ce813d05553f37c3f865d03510 242 Gene3D G3DSA:3.40.50.10190 154 241 9.5E-14 T 13-10-2018 IPR036420 BRCT domain superfamily CLM_3598 cf06e4ce813d05553f37c3f865d03510 242 SUPERFAMILY SSF47781 6 136 3.78E-21 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3598 cf06e4ce813d05553f37c3f865d03510 242 Gene3D G3DSA:1.10.150.20 4 75 5.7E-10 T 13-10-2018 CLM_1541 3c69d2b3425fdcc0fc4580b43b6c42b3 182 Gene3D G3DSA:3.30.70.270 16 182 6.9E-39 T 13-10-2018 CLM_1541 3c69d2b3425fdcc0fc4580b43b6c42b3 182 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 28 179 2.0E-37 T 13-10-2018 IPR000160 GGDEF domain CLM_1541 3c69d2b3425fdcc0fc4580b43b6c42b3 182 SMART SM00267 18 182 2.5E-22 T 13-10-2018 IPR000160 GGDEF domain CLM_1541 3c69d2b3425fdcc0fc4580b43b6c42b3 182 Pfam PF00990 Diguanylate cyclase, GGDEF domain 29 180 1.0E-34 T 13-10-2018 IPR000160 GGDEF domain CLM_1541 3c69d2b3425fdcc0fc4580b43b6c42b3 182 SUPERFAMILY SSF55073 34 179 1.57E-34 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 25 103 2.0E-33 T 13-10-2018 CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 18 104 23.123 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 Pfam PF00312 Ribosomal protein S15 23 103 1.9E-39 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 SUPERFAMILY SSF47060 18 104 1.32E-37 T 13-10-2018 IPR009068 S15/NS1, RNA-binding CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 20 104 4.6E-39 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 Gene3D G3DSA:1.10.287.10 17 104 3.8E-36 T 13-10-2018 CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 SMART SM01387 23 103 1.3E-55 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2706 2d48b5cc33dca1f54e436a036b776cbb 104 ProSitePatterns PS00362 Ribosomal protein S15 signature. 54 84 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3376 38d38542261d4c12472b85bd51908837 126 Pfam PF01042 Endoribonuclease L-PSP 8 125 8.1E-47 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CLM_3376 38d38542261d4c12472b85bd51908837 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 5 125 5.9E-55 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 CLM_3376 38d38542261d4c12472b85bd51908837 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 CLM_3376 38d38542261d4c12472b85bd51908837 126 SUPERFAMILY SSF55298 1 126 7.23E-48 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_3376 38d38542261d4c12472b85bd51908837 126 Gene3D G3DSA:3.30.1330.40 1 126 3.8E-55 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 305 375 2.0E-25 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 SUPERFAMILY SSF103039 40 230 2.7E-46 T 13-10-2018 IPR028976 CheC-like superfamily CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 Pfam PF04509 CheC-like family 142 175 4.3E-11 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 Pfam PF04509 CheC-like family 44 79 1.1E-12 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 Gene3D G3DSA:2.30.330.10 292 386 8.4E-35 T 13-10-2018 IPR036429 SpoA-like superfamily CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 302 377 1.7E-30 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 PRINTS PR00956 Flagellar motor switch protein FliN signature 351 366 1.0E-24 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 PRINTS PR00956 Flagellar motor switch protein FliN signature 338 351 1.0E-24 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 PRINTS PR00956 Flagellar motor switch protein FliN signature 322 338 1.0E-24 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 PRINTS PR00956 Flagellar motor switch protein FliN signature 305 321 1.0E-24 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 SUPERFAMILY SSF101801 301 383 8.76E-25 T 13-10-2018 IPR036429 SpoA-like superfamily CLM_3109 de4529abb5857cfcde1c38b2f43278ed 386 Gene3D G3DSA:3.40.1550.10 39 237 6.8E-48 T 13-10-2018 IPR028976 CheC-like superfamily CLM_0528 182fe930979380d967a00c33d667666d 267 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 63 76 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CLM_0528 182fe930979380d967a00c33d667666d 267 Gene3D G3DSA:3.40.190.10 42 261 3.3E-78 T 13-10-2018 CLM_0528 182fe930979380d967a00c33d667666d 267 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 262 5.5E-70 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_0528 182fe930979380d967a00c33d667666d 267 Gene3D G3DSA:3.40.190.10 126 219 3.3E-78 T 13-10-2018 CLM_0528 182fe930979380d967a00c33d667666d 267 SUPERFAMILY SSF53850 1 263 1.6E-75 T 13-10-2018 CLM_0528 182fe930979380d967a00c33d667666d 267 SMART SM00062 40 263 9.4E-75 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_0528 182fe930979380d967a00c33d667666d 267 SMART SM00079 40 262 1.7E-5 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CLM_1534 b373d30bfc0516ec7fef03c02af5a7ad 270 SUPERFAMILY SSF52540 1 237 4.53E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1534 b373d30bfc0516ec7fef03c02af5a7ad 270 Pfam PF00005 ABC transporter 29 179 1.8E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1534 b373d30bfc0516ec7fef03c02af5a7ad 270 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1534 b373d30bfc0516ec7fef03c02af5a7ad 270 Gene3D G3DSA:3.40.50.300 1 269 2.1E-73 T 13-10-2018 CLM_1534 b373d30bfc0516ec7fef03c02af5a7ad 270 SMART SM00382 37 230 4.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0342 bba0e30b8274b5f3f0abc53bd6cafdb1 143 SUPERFAMILY SSF46785 2 137 1.79E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0342 bba0e30b8274b5f3f0abc53bd6cafdb1 143 Pfam PF02082 Transcriptional regulator 1 81 2.4E-24 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_0342 bba0e30b8274b5f3f0abc53bd6cafdb1 143 Gene3D G3DSA:1.10.10.10 1 143 7.0E-57 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 188 738 3.3E-152 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 SUPERFAMILY SSF56784 437 734 2.83E-55 T 13-10-2018 IPR036412 HAD-like superfamily CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Gene3D G3DSA:3.30.70.100 4 85 6.9E-11 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 SUPERFAMILY SSF55008 2 72 8.38E-11 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00941 Cadmium-transporting ATPase signature 7 16 6.1E-8 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00941 Cadmium-transporting ATPase signature 222 242 6.1E-8 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00941 Cadmium-transporting ATPase signature 322 336 6.1E-8 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00941 Cadmium-transporting ATPase signature 303 319 6.1E-8 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 441 447 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Gene3D G3DSA:3.40.1110.10 450 561 2.1E-78 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 SUPERFAMILY SSF81665 188 712 1.57E-10 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Pfam PF00403 Heavy-metal-associated domain 10 62 4.6E-12 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 SUPERFAMILY SSF81653 240 335 6.15E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 208 712 2.2E-71 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 652 4.2E-19 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 287 301 4.2E-19 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 657 669 4.2E-19 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 577 587 4.2E-19 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 439 453 4.2E-19 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Gene3D G3DSA:2.70.150.20 230 342 7.5E-30 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Pfam PF00702 haloacid dehalogenase-like hydrolase 436 647 7.6E-33 T 13-10-2018 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Gene3D G3DSA:3.40.50.1000 420 686 2.1E-78 T 13-10-2018 IPR023214 HAD superfamily CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 188 735 1.9E-168 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_0561 a5ce7c6896cfe32b06e7e1d58172a1c3 738 Pfam PF00122 E1-E2 ATPase 238 419 5.7E-51 T 13-10-2018 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 5 77 3.0E-30 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 81 25.204 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 Pfam PF00366 Ribosomal protein S17 11 78 3.0E-33 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 PRINTS PR00973 Ribosomal protein S17 family signature 57 67 2.3E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 PRINTS PR00973 Ribosomal protein S17 family signature 25 48 2.3E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 PRINTS PR00973 Ribosomal protein S17 family signature 67 74 2.3E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 SUPERFAMILY SSF50249 5 83 7.71E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3939 65f696882a654cc6ba5f653317482e8b 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 77 1.3E-36 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3939 65f696882a654cc6ba5f653317482e8b 84 Gene3D G3DSA:2.40.50.140 5 84 2.5E-35 T 13-10-2018 CLM_0097 c60648bf9918de4f0e2862e6ea45c139 231 SUPERFAMILY SSF52540 1 228 4.1E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0097 c60648bf9918de4f0e2862e6ea45c139 231 Pfam PF02223 Thymidylate kinase 9 190 8.4E-17 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 CLM_0097 c60648bf9918de4f0e2862e6ea45c139 231 Gene3D G3DSA:3.40.50.300 6 220 1.2E-46 T 13-10-2018 CLM_1343 179eafae9676469bce2b6ac66205b740 628 Pfam PF10110 Membrane domain of glycerophosphoryl diester phosphodiesterase 19 361 1.2E-83 T 13-10-2018 IPR018476 Glycerophosphoryl diester phosphodiesterase, membrane domain CLM_1343 179eafae9676469bce2b6ac66205b740 628 SUPERFAMILY SSF51695 374 603 5.23E-67 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CLM_1343 179eafae9676469bce2b6ac66205b740 628 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 379 597 1.2E-33 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CLM_1343 179eafae9676469bce2b6ac66205b740 628 Gene3D G3DSA:3.20.20.190 365 608 8.8E-70 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 SUPERFAMILY SSF47413 1 67 3.94E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 SMART SM00530 6 61 2.1E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 Pfam PF07883 Cupin domain 118 169 4.1E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 Gene3D G3DSA:2.60.120.10 88 176 4.7E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 Pfam PF01381 Helix-turn-helix 7 60 3.5E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 SUPERFAMILY SSF51182 54 174 7.79E-17 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_1395 572c07ec568f6eb68e0abfa4d27c21ec 177 Gene3D G3DSA:1.10.260.40 1 87 4.7E-18 T 13-10-2018 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 PIRSF PIRSF019549 1 256 1.8E-114 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 PIRSF PIRSF019549 248 324 9.9E-21 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 ProDom PD041835 PROTEASE GERMINATION HYDROLASE SPORE GPR ENDOPEPTIDASE PROTEINASE ZYMOGEN PRECURSOR PEPTIDASE 3 302 2.0E-99 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 TIGRFAM TIGR01441 GPR: GPR endopeptidase 3 249 3.5E-105 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 Pfam PF03418 Germination protease 9 253 1.0E-87 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 Hamap MF_00626 Germination protease [gpr]. 1 324 159.147 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 SUPERFAMILY SSF53163 1 324 1.75E-117 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CLM_3361 def4fcc90fcadf5d5842bb66db4a9af7 324 Gene3D G3DSA:3.40.50.1450 1 324 3.4E-122 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Pfam PF09285 Elongation factor P, C-terminal 129 184 1.3E-27 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 1.2E-77 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 5.1E-26 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 2.0E-21 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Hamap MF_00141 Elongation factor P [efp]. 1 185 51.683 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Gene3D G3DSA:2.40.50.140 64 127 5.3E-26 T 13-10-2018 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 SUPERFAMILY SSF50249 65 129 7.71E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 SMART SM00841 129 184 4.2E-34 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 SMART SM01185 67 121 3.6E-25 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 SUPERFAMILY SSF50104 1 62 3.79E-20 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 SUPERFAMILY SSF50249 128 185 2.57E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Gene3D G3DSA:2.40.50.140 128 185 2.8E-28 T 13-10-2018 CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 PIRSF PIRSF005901 1 185 1.1E-68 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP CLM_2114 4a5e26ffa85a208d6286843dd5f2530d 185 Gene3D G3DSA:2.30.30.30 1 63 5.2E-27 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 SUPERFAMILY SSF52833 2 105 4.23E-37 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_3901 9f9192e126ecabf8d23be9605a808535 105 Gene3D G3DSA:3.40.30.10 1 105 2.1E-36 T 13-10-2018 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 Pfam PF00085 Thioredoxin 2 104 1.4E-33 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 104 1.7E-40 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 PRINTS PR00421 Thioredoxin family signature 21 29 1.7E-8 T 13-10-2018 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 PRINTS PR00421 Thioredoxin family signature 29 38 1.7E-8 T 13-10-2018 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 PRINTS PR00421 Thioredoxin family signature 69 80 1.7E-8 T 13-10-2018 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CLM_3901 9f9192e126ecabf8d23be9605a808535 105 PIRSF PIRSF000077 1 105 9.0E-42 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CLM_1955 7d7825b534a453e31119f8547e7ae784 311 Gene3D G3DSA:1.10.20.140 111 183 2.1E-107 T 13-10-2018 CLM_1955 7d7825b534a453e31119f8547e7ae784 311 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 5 292 2.3E-103 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CLM_1955 7d7825b534a453e31119f8547e7ae784 311 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 4 302 30.944 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CLM_1955 7d7825b534a453e31119f8547e7ae784 311 SUPERFAMILY SSF52540 5 147 2.21E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1955 7d7825b534a453e31119f8547e7ae784 311 Gene3D G3DSA:3.40.50.300 8 290 2.1E-107 T 13-10-2018 CLM_1955 7d7825b534a453e31119f8547e7ae784 311 SUPERFAMILY SSF52540 5 311 1.74E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1955 7d7825b534a453e31119f8547e7ae784 311 Pfam PF01715 IPP transferase 37 285 1.7E-81 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CLM_0124 56a30a98fca9047e5533447cea008aac 275 Gene3D G3DSA:3.40.50.150 1 204 4.8E-74 T 13-10-2018 CLM_0124 56a30a98fca9047e5533447cea008aac 275 SUPERFAMILY SSF53335 9 273 1.28E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0124 56a30a98fca9047e5533447cea008aac 275 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 12 269 2.9E-86 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CLM_0124 56a30a98fca9047e5533447cea008aac 275 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 12 272 54.766 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CLM_0124 56a30a98fca9047e5533447cea008aac 275 Gene3D G3DSA:1.10.8.100 208 273 1.2E-22 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 CLM_0124 56a30a98fca9047e5533447cea008aac 275 SMART SM00650 28 200 4.1E-79 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 CLM_0124 56a30a98fca9047e5533447cea008aac 275 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 44 71 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 CLM_0124 56a30a98fca9047e5533447cea008aac 275 Pfam PF00398 Ribosomal RNA adenine dimethylase 12 270 3.9E-69 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CLM_3375 491538c57a9c5d6eaf001050b84d1a87 300 SUPERFAMILY SSF55174 20 65 2.16E-5 T 13-10-2018 CLM_3375 491538c57a9c5d6eaf001050b84d1a87 300 SUPERFAMILY SSF55120 72 298 2.06E-69 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3375 491538c57a9c5d6eaf001050b84d1a87 300 Pfam PF00849 RNA pseudouridylate synthase 88 240 7.9E-33 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3375 491538c57a9c5d6eaf001050b84d1a87 300 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 21 299 4.3E-84 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3375 491538c57a9c5d6eaf001050b84d1a87 300 Gene3D G3DSA:3.10.290.10 17 71 2.0E-5 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_3375 491538c57a9c5d6eaf001050b84d1a87 300 Gene3D G3DSA:3.30.2350.10 80 300 4.2E-73 T 13-10-2018 CLM_3838 48d2e506010c8180bd057850c74fd744 445 Pfam PF01933 Uncharacterised protein family UPF0052 104 392 1.6E-111 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CLM_3838 48d2e506010c8180bd057850c74fd744 445 Gene3D G3DSA:3.40.50.12300 99 427 2.0E-129 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily CLM_3838 48d2e506010c8180bd057850c74fd744 445 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 104 414 9.6E-121 T 13-10-2018 IPR010119 Gluconeogenesis factor CLM_3838 48d2e506010c8180bd057850c74fd744 445 SUPERFAMILY SSF142338 101 412 7.46E-103 T 13-10-2018 CLM_3838 48d2e506010c8180bd057850c74fd744 445 Hamap MF_00973 Gluconeogenesis factor. 100 417 35.201 T 13-10-2018 IPR010119 Gluconeogenesis factor CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 Gene3D G3DSA:3.30.450.20 464 559 7.4E-20 T 13-10-2018 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 SMART SM00283 156 417 3.2E-57 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 195 376 1.0E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 Pfam PF02743 Cache domain 423 559 1.1E-13 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 1.3E-11 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 184 213 1.3E-11 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 331 360 1.3E-11 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 SUPERFAMILY SSF103190 463 549 9.16E-11 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 Gene3D G3DSA:1.10.287.950 114 431 1.2E-61 T 13-10-2018 CLM_0519 df6eb4e609b3310b49f76dd5f18dd16f 563 SUPERFAMILY SSF58104 162 430 5.67E-62 T 13-10-2018 CLM_1854 a488d0594a548647b79fc0e80725887b 230 SMART SM00448 4 114 6.7E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1854 a488d0594a548647b79fc0e80725887b 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 5.4E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1854 a488d0594a548647b79fc0e80725887b 230 Gene3D G3DSA:1.10.10.10 132 230 2.9E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1854 a488d0594a548647b79fc0e80725887b 230 SMART SM00862 152 228 7.7E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1854 a488d0594a548647b79fc0e80725887b 230 Pfam PF00072 Response regulator receiver domain 6 115 8.0E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1854 a488d0594a548647b79fc0e80725887b 230 Gene3D G3DSA:3.40.50.2300 2 131 3.1E-39 T 13-10-2018 CLM_1854 a488d0594a548647b79fc0e80725887b 230 SUPERFAMILY SSF52172 4 127 9.53E-42 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1854 a488d0594a548647b79fc0e80725887b 230 SUPERFAMILY SSF46894 129 228 1.47E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_2280 c821724b126d7153f149c55c73a725a4 101 Gene3D G3DSA:2.10.260.10 12 52 2.7E-10 T 13-10-2018 CLM_2280 c821724b126d7153f149c55c73a725a4 101 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 14 49 1.5E-8 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_2280 c821724b126d7153f149c55c73a725a4 101 SMART SM00966 14 58 9.8E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_2280 c821724b126d7153f149c55c73a725a4 101 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 14 55 1.4E-14 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_2280 c821724b126d7153f149c55c73a725a4 101 SUPERFAMILY SSF89447 10 55 4.84E-11 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily CLM_0726 c66812f1e376fb5532884778cb292d15 559 SUPERFAMILY SSF52540 319 558 1.61E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0726 c66812f1e376fb5532884778cb292d15 559 SUPERFAMILY SSF90123 3 304 1.14E-51 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0726 c66812f1e376fb5532884778cb292d15 559 Gene3D G3DSA:3.40.50.300 318 558 7.9E-70 T 13-10-2018 CLM_0726 c66812f1e376fb5532884778cb292d15 559 Pfam PF00005 ABC transporter 342 488 3.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0726 c66812f1e376fb5532884778cb292d15 559 Gene3D G3DSA:1.20.1560.10 1 309 5.4E-45 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0726 c66812f1e376fb5532884778cb292d15 559 ProSitePatterns PS00211 ABC transporters family signature. 461 475 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0726 c66812f1e376fb5532884778cb292d15 559 SMART SM00382 350 536 5.4E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0726 c66812f1e376fb5532884778cb292d15 559 Pfam PF00664 ABC transporter transmembrane region 12 282 1.3E-32 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_3305 9374e5d995d45143a861496f98d7fada 441 SUPERFAMILY SSF54631 219 356 8.42E-29 T 13-10-2018 CLM_3305 9374e5d995d45143a861496f98d7fada 441 Pfam PF01595 Domain of unknown function DUF21 10 209 7.1E-46 T 13-10-2018 IPR002550 CNNM, transmembrane domain CLM_3305 9374e5d995d45143a861496f98d7fada 441 Pfam PF03471 Transporter associated domain 362 439 1.3E-21 T 13-10-2018 IPR005170 Transporter-associated domain CLM_3305 9374e5d995d45143a861496f98d7fada 441 SMART SM01091 361 441 2.0E-23 T 13-10-2018 IPR005170 Transporter-associated domain CLM_3305 9374e5d995d45143a861496f98d7fada 441 Gene3D G3DSA:3.30.465.10 362 441 4.7E-23 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3305 9374e5d995d45143a861496f98d7fada 441 SUPERFAMILY SSF56176 359 439 1.28E-20 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_3305 9374e5d995d45143a861496f98d7fada 441 Gene3D G3DSA:3.10.580.10 205 361 1.4E-51 T 13-10-2018 CLM_3305 9374e5d995d45143a861496f98d7fada 441 Pfam PF00571 CBS domain 225 281 2.3E-6 T 13-10-2018 IPR000644 CBS domain CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Gene3D G3DSA:3.10.350.10 26 71 2.4E-13 T 13-10-2018 IPR036779 LysM domain superfamily CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Pfam PF01476 LysM domain 75 117 2.0E-12 T 13-10-2018 IPR018392 LysM domain CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Pfam PF01476 LysM domain 29 71 1.6E-11 T 13-10-2018 IPR018392 LysM domain CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 SUPERFAMILY SSF54106 29 71 4.05E-10 T 13-10-2018 CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Pfam PF07486 Cell Wall Hydrolase 158 257 2.0E-24 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Gene3D G3DSA:3.10.350.10 72 128 3.7E-14 T 13-10-2018 IPR036779 LysM domain superfamily CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 SMART SM00257 28 71 4.4E-10 T 13-10-2018 IPR018392 LysM domain CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 SMART SM00257 74 117 1.4E-13 T 13-10-2018 IPR018392 LysM domain CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Gene3D G3DSA:2.40.10.420 225 259 2.4E-10 T 13-10-2018 CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 Gene3D G3DSA:1.10.10.2520 141 224 1.1E-29 T 13-10-2018 CLM_1498 d6c8d57edd469b478e9bc05cb47ea696 259 SUPERFAMILY SSF54106 73 117 1.44E-10 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 TIGRFAM TIGR00763 lon: endopeptidase La 9 769 5.3E-298 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CLM_3640 0652968904866b866c43d251574be9cd 773 Hamap MF_01973 Lon protease [lon]. 8 770 69.589 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 CLM_3640 0652968904866b866c43d251574be9cd 773 Gene3D G3DSA:2.30.130.40 2 113 4.8E-31 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 SUPERFAMILY SSF88697 7 199 8.45E-40 T 13-10-2018 IPR015947 PUA-like superfamily CLM_3640 0652968904866b866c43d251574be9cd 773 Gene3D G3DSA:1.10.8.60 490 582 5.7E-28 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 SUPERFAMILY SSF54211 593 768 5.69E-53 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3640 0652968904866b866c43d251574be9cd 773 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 674 682 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 CLM_3640 0652968904866b866c43d251574be9cd 773 SUPERFAMILY SSF52540 307 589 1.82E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3640 0652968904866b866c43d251574be9cd 773 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 350 487 1.5E-22 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CLM_3640 0652968904866b866c43d251574be9cd 773 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 7 199 1.3E-38 T 13-10-2018 IPR003111 Lon, substrate-binding domain CLM_3640 0652968904866b866c43d251574be9cd 773 PIRSF PIRSF001174 1 773 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CLM_3640 0652968904866b866c43d251574be9cd 773 SMART SM00382 346 493 2.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3640 0652968904866b866c43d251574be9cd 773 Gene3D G3DSA:3.30.230.10 591 773 8.5E-80 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3640 0652968904866b866c43d251574be9cd 773 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 568 770 2.8E-95 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CLM_3640 0652968904866b866c43d251574be9cd 773 SMART SM00464 7 200 9.1E-60 T 13-10-2018 IPR003111 Lon, substrate-binding domain CLM_3640 0652968904866b866c43d251574be9cd 773 Gene3D G3DSA:3.40.50.300 311 489 1.1E-66 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 354 373 2.1E-54 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 671 690 2.1E-54 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 701 720 2.1E-54 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 593 609 2.1E-54 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 724 742 2.1E-54 T 13-10-2018 CLM_3640 0652968904866b866c43d251574be9cd 773 Gene3D G3DSA:1.20.58.1480 119 243 8.7E-36 T 13-10-2018 CLM_2163 2f8defdbcc9b9b90da75f25452b34d84 283 Gene3D G3DSA:3.40.190.10 115 229 8.2E-92 T 13-10-2018 CLM_2163 2f8defdbcc9b9b90da75f25452b34d84 283 Gene3D G3DSA:3.40.190.10 40 265 8.2E-92 T 13-10-2018 CLM_2163 2f8defdbcc9b9b90da75f25452b34d84 283 Pfam PF12849 PBP superfamily domain 29 259 4.5E-34 T 13-10-2018 IPR024370 PBP domain CLM_2163 2f8defdbcc9b9b90da75f25452b34d84 283 SUPERFAMILY SSF53850 40 269 8.59E-33 T 13-10-2018 CLM_2275 edd9706409a4f1a86ad05c7b9cf87100 97 Pfam PF14242 Domain of unknown function (DUF4342) 7 75 2.2E-18 T 13-10-2018 IPR025642 Domain of unknown function DUF4342 CLM_0129 9ae19646cf28d869be044d7fa3cd274b 231 Pfam PF00005 ABC transporter 21 169 1.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0129 9ae19646cf28d869be044d7fa3cd274b 231 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0129 9ae19646cf28d869be044d7fa3cd274b 231 SUPERFAMILY SSF52540 1 223 1.08E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0129 9ae19646cf28d869be044d7fa3cd274b 231 Gene3D G3DSA:3.40.50.300 1 229 2.9E-67 T 13-10-2018 CLM_0129 9ae19646cf28d869be044d7fa3cd274b 231 SMART SM00382 30 217 4.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3616 78b5bb52a55cb8294401080d126c4934 365 SUPERFAMILY SSF82771 13 95 2.88E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3616 78b5bb52a55cb8294401080d126c4934 365 SUPERFAMILY SSF46600 187 234 2.22E-5 T 13-10-2018 IPR036876 UVR domain superfamily CLM_3616 78b5bb52a55cb8294401080d126c4934 365 SMART SM00465 13 95 2.8E-17 T 13-10-2018 IPR000305 GIY-YIG endonuclease CLM_3616 78b5bb52a55cb8294401080d126c4934 365 Gene3D G3DSA:3.40.1440.10 1 99 1.1E-29 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3616 78b5bb52a55cb8294401080d126c4934 365 Pfam PF01541 GIY-YIG catalytic domain 15 90 7.6E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease CLM_3616 78b5bb52a55cb8294401080d126c4934 365 Pfam PF02151 UvrB/uvrC motif 199 227 2.6E-4 T 13-10-2018 IPR001943 UVR domain GO:0005515 CLM_1065 f557937224e1055196033760b74b8ac8 99 Pfam PF02553 Cobalt transport protein component CbiN 5 73 3.8E-30 T 13-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 CLM_1065 f557937224e1055196033760b74b8ac8 99 TIGRFAM TIGR01165 cbiN: cobalt transport protein 2 87 6.2E-33 T 13-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 CLM_1065 f557937224e1055196033760b74b8ac8 99 Hamap MF_00330 Cobalt transport protein CbiN [cbiN]. 1 99 42.125 T 13-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 CLM_1865 93add8afab69ca14d0105b901530daca 792 SUPERFAMILY SSF51717 314 570 6.28E-84 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 SUPERFAMILY SSF82282 2 355 1.29E-105 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 CLM_1865 93add8afab69ca14d0105b901530daca 792 SUPERFAMILY SSF47644 587 663 1.16E-13 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 Gene3D G3DSA:3.20.20.20 312 574 3.7E-97 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 Gene3D G3DSA:1.10.1240.10 575 664 1.5E-15 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 Pfam PF02310 B12 binding domain 672 776 4.9E-23 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CLM_1865 93add8afab69ca14d0105b901530daca 792 SUPERFAMILY SSF52242 666 789 5.1E-41 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 CLM_1865 93add8afab69ca14d0105b901530daca 792 Pfam PF00809 Pterin binding enzyme 316 536 4.5E-34 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 Pfam PF02574 Homocysteine S-methyltransferase 12 281 6.8E-58 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CLM_1865 93add8afab69ca14d0105b901530daca 792 SMART SM01018 582 664 5.8E-24 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 Pfam PF02607 B12 binding domain 588 656 3.2E-13 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_1865 93add8afab69ca14d0105b901530daca 792 Gene3D G3DSA:3.20.20.330 1 297 6.3E-91 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 CLM_1865 93add8afab69ca14d0105b901530daca 792 PIRSF PIRSF037472 1 791 0.0 T 13-10-2018 IPR017215 5-methyltetrahydrofolate-homocysteine S-methyltransferase, bacterial CLM_1865 93add8afab69ca14d0105b901530daca 792 Gene3D G3DSA:3.40.50.280 669 791 8.5E-46 T 13-10-2018 CLM_1746 ff3f60a494c484449757b3b0393d9b66 232 Pfam PF00005 ABC transporter 22 165 1.9E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1746 ff3f60a494c484449757b3b0393d9b66 232 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1746 ff3f60a494c484449757b3b0393d9b66 232 Gene3D G3DSA:3.40.50.300 1 230 3.1E-64 T 13-10-2018 CLM_1746 ff3f60a494c484449757b3b0393d9b66 232 SMART SM00382 31 214 8.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1746 ff3f60a494c484449757b3b0393d9b66 232 SUPERFAMILY SSF52540 3 223 1.86E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2236 277b6085752666f2d4c5fc88d19f58bb 426 Gene3D G3DSA:3.90.226.30 6 414 1.7E-131 T 13-10-2018 CLM_2236 277b6085752666f2d4c5fc88d19f58bb 426 Pfam PF09861 Domain of unknown function (DUF2088) 8 207 1.3E-72 T 13-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 CLM_2236 277b6085752666f2d4c5fc88d19f58bb 426 Gene3D G3DSA:3.40.50.11440 34 273 1.7E-131 T 13-10-2018 CLM_3212 231c79573e4de8c7cb730e15060b9f06 225 SUPERFAMILY SSF48295 38 106 8.37E-14 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CLM_3212 231c79573e4de8c7cb730e15060b9f06 225 SUPERFAMILY SSF48295 95 182 2.93E-22 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CLM_3212 231c79573e4de8c7cb730e15060b9f06 225 SUPERFAMILY SSF46689 3 53 5.97E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3212 231c79573e4de8c7cb730e15060b9f06 225 Pfam PF13518 Helix-turn-helix domain 10 55 6.9E-6 T 13-10-2018 CLM_3212 231c79573e4de8c7cb730e15060b9f06 225 Pfam PF13518 Helix-turn-helix domain 130 179 2.6E-13 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 SMART SM00663 225 504 3.1E-183 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 4 1167 18.845 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Gene3D G3DSA:1.10.132.30 637 771 3.9E-63 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Gene3D G3DSA:2.40.50.100 943 1005 2.6E-71 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Gene3D G3DSA:1.10.40.90 364 406 4.2E-25 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Gene3D G3DSA:1.10.1790.20 927 1104 2.6E-71 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Pfam PF04983 RNA polymerase Rpb1, domain 3 479 640 5.3E-27 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Pfam PF00623 RNA polymerase Rpb1, domain 2 334 475 1.7E-37 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Pfam PF05000 RNA polymerase Rpb1, domain 4 669 735 1.3E-15 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Pfam PF04998 RNA polymerase Rpb1, domain 5 747 1104 1.3E-68 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Gene3D G3DSA:1.10.274.100 480 636 1.1E-47 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Gene3D G3DSA:1.10.150.390 1106 1168 1.4E-29 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 SUPERFAMILY SSF64484 5 1157 0.0 T 13-10-2018 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 Pfam PF04997 RNA polymerase Rpb1, domain 1 5 332 7.1E-92 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3955 192e6fccdbf996520331287c17f6f89f 1178 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1157 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Pfam PF00571 CBS domain 251 300 1.5E-7 T 13-10-2018 IPR000644 CBS domain CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Pfam PF00571 CBS domain 70 120 1.4E-4 T 13-10-2018 IPR000644 CBS domain CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Gene3D G3DSA:3.40.1390.20 130 245 7.9E-79 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 SUPERFAMILY SSF64182 3 543 3.77E-69 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 SMART SM00116 77 125 12.0 T 13-10-2018 IPR000644 CBS domain CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 SMART SM00116 256 304 3.8E-4 T 13-10-2018 IPR000644 CBS domain CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 SUPERFAMILY SSF54631 68 300 1.1E-25 T 13-10-2018 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 SUPERFAMILY SSF75138 139 252 3.14E-28 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Gene3D G3DSA:3.10.310.20 426 546 2.3E-35 T 13-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Pfam PF07085 DRTGG domain 142 244 6.2E-25 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Gene3D G3DSA:3.90.1640.10 294 425 6.1E-47 T 13-10-2018 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 SMART SM01131 417 544 4.9E-51 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Gene3D G3DSA:3.10.580.10 70 293 7.9E-79 T 13-10-2018 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Pfam PF01368 DHH family 5 382 3.9E-28 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_3001 389c76c9a936fea90e731dfa74fabffc 547 Pfam PF02833 DHHA2 domain 419 543 9.0E-18 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 524 1.3E-33 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 92 591 7.1E-79 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 458 468 6.3E-27 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 310 324 6.3E-27 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 530 6.3E-27 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 168 182 6.3E-27 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 535 547 6.3E-27 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 69 613 7.3E-172 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 SUPERFAMILY SSF81653 121 218 6.02E-26 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 Pfam PF00122 E1-E2 ATPase 119 289 1.3E-48 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 Gene3D G3DSA:3.40.50.1000 291 563 9.0E-85 T 13-10-2018 IPR023214 HAD superfamily CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 Gene3D G3DSA:2.70.150.20 112 222 4.2E-36 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 Gene3D G3DSA:3.40.1110.10 321 443 9.0E-85 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 65 614 3.0E-129 T 13-10-2018 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 SUPERFAMILY SSF81665 41 591 2.62E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 SUPERFAMILY SSF56784 309 611 6.05E-48 T 13-10-2018 IPR036412 HAD-like superfamily CLM_2312 99dca7132ad2fe4d4c0d45844eb72e52 623 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 312 318 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 251 404 5.9E-43 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 408 564 7.0E-51 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 417 428 1.9E-15 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 396 412 1.9E-15 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 482 498 1.9E-15 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 Gene3D G3DSA:3.10.170.10 249 409 2.1E-39 T 13-10-2018 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 Pfam PF03413 Peptidase propeptide and YPEB domain 149 213 1.4E-6 T 13-10-2018 IPR025711 PepSY domain CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 Gene3D G3DSA:1.10.390.10 410 564 1.6E-46 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 SUPERFAMILY SSF55486 245 564 1.12E-76 T 13-10-2018 CLM_1605 bf1e041284ca6d0d2de8549ff9a8790a 572 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 86 133 9.9E-7 T 13-10-2018 IPR011096 FTP domain CLM_3205 2841d5a7d90651f0f2cc59daef2b1259 239 SMART SM00382 29 212 7.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3205 2841d5a7d90651f0f2cc59daef2b1259 239 Gene3D G3DSA:3.40.50.300 1 232 1.8E-51 T 13-10-2018 CLM_3205 2841d5a7d90651f0f2cc59daef2b1259 239 SUPERFAMILY SSF52540 1 225 7.72E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3205 2841d5a7d90651f0f2cc59daef2b1259 239 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3205 2841d5a7d90651f0f2cc59daef2b1259 239 Pfam PF00005 ABC transporter 21 163 7.2E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 Gene3D G3DSA:3.30.450.20 153 298 2.7E-21 T 13-10-2018 CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 SMART SM00283 391 667 4.3E-21 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 SUPERFAMILY SSF103190 48 186 3.14E-5 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 449 566 5.2E-26 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 Gene3D G3DSA:1.10.287.950 359 676 1.6E-50 T 13-10-2018 CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 Pfam PF02743 Cache domain 46 279 1.7E-19 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_0600 c0399e5acc509fd97cb4a1ff9a9cff32 676 SUPERFAMILY SSF58104 337 673 6.02E-52 T 13-10-2018 CLM_1578 63e803e1e4d7222ca28eddfc1fb5180d 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 218 1.9E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1578 63e803e1e4d7222ca28eddfc1fb5180d 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 112 5.9E-23 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CLM_1578 63e803e1e4d7222ca28eddfc1fb5180d 221 SUPERFAMILY SSF161098 13 203 7.19E-43 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1578 63e803e1e4d7222ca28eddfc1fb5180d 221 Gene3D G3DSA:1.10.3720.10 2 219 1.7E-50 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0018 b050d1c04a8cdcfa413a3a814e9442e1 893 Pfam PF03699 Uncharacterised protein family (UPF0182) 10 767 7.3E-268 T 13-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 CLM_0018 b050d1c04a8cdcfa413a3a814e9442e1 893 Hamap MF_01600 UPF0182 protein . 1 843 18.129 T 13-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 CLM_3341 eea0b6c83adecbecc1c1c014b17ee658 132 SUPERFAMILY SSF53927 1 130 7.68E-48 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_3341 eea0b6c83adecbecc1c1c014b17ee658 132 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 93 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_3341 eea0b6c83adecbecc1c1c014b17ee658 132 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 98 8.6E-18 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_3341 eea0b6c83adecbecc1c1c014b17ee658 132 Gene3D G3DSA:3.40.140.10 1 132 7.4E-55 T 13-10-2018 CLM_3341 eea0b6c83adecbecc1c1c014b17ee658 132 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 4 130 3.4E-48 T 13-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 CLM_4025 c30be67b7bf65346ca5c96407dd7ea87 79 Gene3D G3DSA:3.10.290.10 1 79 8.9E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_4025 c30be67b7bf65346ca5c96407dd7ea87 79 SMART SM00363 1 61 3.7E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_4025 c30be67b7bf65346ca5c96407dd7ea87 79 PIRSF PIRSF038881 1 79 1.6E-30 T 13-10-2018 IPR025490 RNA-binding protein, HP1423 type CLM_4025 c30be67b7bf65346ca5c96407dd7ea87 79 Pfam PF01479 S4 domain 1 46 6.7E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_4025 c30be67b7bf65346ca5c96407dd7ea87 79 SUPERFAMILY SSF55174 2 76 9.42E-19 T 13-10-2018 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 416 2.2E-53 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 SUPERFAMILY SSF51735 3 164 3.94E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 SUPERFAMILY SSF56327 168 441 1.43E-96 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 Gene3D G3DSA:3.40.50.720 1 166 2.1E-58 T 13-10-2018 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 138 169 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 Gene3D G3DSA:3.90.110.10 167 441 1.6E-106 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 109 129 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 138 155 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 164 175 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 1.5E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0336 9f48432d345104bd0a81432f8171f5f1 441 Pfam PF02056 Family 4 glycosyl hydrolase 6 184 2.9E-66 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 SUPERFAMILY SSF53187 754 961 2.07E-46 T 13-10-2018 CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF07495 Y_Y_Y domain 475 538 9.7E-8 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF07495 Y_Y_Y domain 371 432 2.1E-8 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF07495 Y_Y_Y domain 267 329 2.2E-7 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF07495 Y_Y_Y domain 579 644 5.3E-8 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF07495 Y_Y_Y domain 686 740 4.9E-8 T 13-10-2018 IPR011123 Two component regulator three Y CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 756 958 1.2E-46 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 SMART SM00646 825 958 2.4E-27 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 86 216 1.7E-11 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CLM_3516 5a058a261b61cc7a9cd616ae927a3822 963 Gene3D G3DSA:3.40.630.40 747 963 8.7E-52 T 13-10-2018 CLM_2626 c21dcf0d091ecb0f8371b58cbab45d3b 269 SUPERFAMILY SSF52540 93 251 5.4E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2626 c21dcf0d091ecb0f8371b58cbab45d3b 269 Gene3D G3DSA:3.40.50.300 72 258 1.3E-36 T 13-10-2018 CLM_2626 c21dcf0d091ecb0f8371b58cbab45d3b 269 Pfam PF01695 IstB-like ATP binding protein 124 235 1.0E-16 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CLM_2866 636cbc00a96365d849a92c54ec173e01 569 SUPERFAMILY SSF56281 22 437 4.06E-98 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2866 636cbc00a96365d849a92c54ec173e01 569 Pfam PF00753 Metallo-beta-lactamase superfamily 35 178 4.4E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_2866 636cbc00a96365d849a92c54ec173e01 569 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 378 406 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site CLM_2866 636cbc00a96365d849a92c54ec173e01 569 Gene3D G3DSA:3.10.20.580 463 569 2.5E-39 T 13-10-2018 CLM_2866 636cbc00a96365d849a92c54ec173e01 569 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 368 417 5.8E-10 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLM_2866 636cbc00a96365d849a92c54ec173e01 569 Gene3D G3DSA:3.40.50.10710 221 371 6.0E-189 T 13-10-2018 CLM_2866 636cbc00a96365d849a92c54ec173e01 569 Hamap MF_01491 Ribonuclease J [rnj]. 17 569 48.414 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CLM_2866 636cbc00a96365d849a92c54ec173e01 569 Gene3D G3DSA:3.60.15.10 25 456 6.0E-189 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2866 636cbc00a96365d849a92c54ec173e01 569 SMART SM00849 34 229 5.9E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_2866 636cbc00a96365d849a92c54ec173e01 569 PIRSF PIRSF004803 13 569 8.4E-246 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CLM_2866 636cbc00a96365d849a92c54ec173e01 569 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 22 567 3.8E-205 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 CLM_1978 e1ed29a020a7459b78423f2234227d29 278 Gene3D G3DSA:3.60.110.10 1 276 1.3E-106 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CLM_1978 e1ed29a020a7459b78423f2234227d29 278 Pfam PF00795 Carbon-nitrogen hydrolase 5 258 6.0E-63 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CLM_1978 e1ed29a020a7459b78423f2234227d29 278 SUPERFAMILY SSF56317 1 267 9.68E-81 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CLM_1978 e1ed29a020a7459b78423f2234227d29 278 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site CLM_1331 5020a6e34a74df99f3b24643f922e6fd 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 113 2.1E-27 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CLM_1331 5020a6e34a74df99f3b24643f922e6fd 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 219 3.7E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1331 5020a6e34a74df99f3b24643f922e6fd 222 Gene3D G3DSA:1.10.3720.10 4 221 2.2E-56 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1331 5020a6e34a74df99f3b24643f922e6fd 222 SUPERFAMILY SSF161098 16 204 6.93E-47 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3386 2f2e8cc9a1d70ce4968e2463e3112a8e 479 Pfam PF10150 Ribonuclease E/G family 105 370 3.9E-79 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 CLM_3386 2f2e8cc9a1d70ce4968e2463e3112a8e 479 Gene3D G3DSA:2.40.50.140 30 109 6.3E-17 T 13-10-2018 CLM_3386 2f2e8cc9a1d70ce4968e2463e3112a8e 479 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 399 3.7E-101 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 CLM_3386 2f2e8cc9a1d70ce4968e2463e3112a8e 479 SUPERFAMILY SSF50249 38 109 4.52E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3386 2f2e8cc9a1d70ce4968e2463e3112a8e 479 SMART SM00316 36 103 4.8E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_0612 ad73e13f8e9261bf79e157b4bceee7db 216 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 90 188 6.3E-24 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_0612 ad73e13f8e9261bf79e157b4bceee7db 216 SUPERFAMILY SSF54719 87 193 7.86E-31 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_0612 ad73e13f8e9261bf79e157b4bceee7db 216 PIRSF PIRSF000349 3 197 6.6E-44 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_0612 ad73e13f8e9261bf79e157b4bceee7db 216 SUPERFAMILY SSF46609 6 82 1.54E-9 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_0612 ad73e13f8e9261bf79e157b4bceee7db 216 Gene3D G3DSA:2.40.500.20 81 201 9.6E-28 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_0748 019d759d29a481608fbc18e2b9718cdf 102 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 60 1.8E-5 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CLM_0748 019d759d29a481608fbc18e2b9718cdf 102 SUPERFAMILY SSF54909 8 84 9.12E-15 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CLM_0748 019d759d29a481608fbc18e2b9718cdf 102 Gene3D G3DSA:3.30.70.100 3 77 1.1E-14 T 13-10-2018 CLM_2841 3a8cdf2682897abca19c0e412c7ff737 424 Pfam PF13641 Glycosyltransferase like family 2 48 272 2.3E-30 T 13-10-2018 CLM_2841 3a8cdf2682897abca19c0e412c7ff737 424 Gene3D G3DSA:3.90.550.10 34 269 3.8E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2841 3a8cdf2682897abca19c0e412c7ff737 424 SUPERFAMILY SSF53448 47 339 6.99E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2845 b9de5a6c728afbae427112405ab57bec 234 SUPERFAMILY SSF88946 21 124 1.26E-33 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 Pfam PF04542 Sigma-70 region 2 54 123 2.3E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 Pfam PF04545 Sigma-70, region 4 177 225 2.4E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 TIGRFAM TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor 4 228 4.4E-121 T 13-10-2018 IPR014209 RNA polymerase sigma-K type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 SUPERFAMILY SSF88659 137 229 2.18E-18 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2845 b9de5a6c728afbae427112405ab57bec 234 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 52 228 1.1E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 Gene3D G3DSA:1.10.10.10 162 233 9.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2845 b9de5a6c728afbae427112405ab57bec 234 PRINTS PR00046 Major sigma-70 factor signature 78 91 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 PRINTS PR00046 Major sigma-70 factor signature 177 189 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 PRINTS PR00046 Major sigma-70 factor signature 198 213 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 PRINTS PR00046 Major sigma-70 factor signature 213 224 1.7E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 198 224 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 PIRSF PIRSF000770 4 233 3.3E-68 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2845 b9de5a6c728afbae427112405ab57bec 234 Gene3D G3DSA:1.20.120.1810 22 123 4.0E-24 T 13-10-2018 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 Gene3D G3DSA:1.10.1060.10 247 333 3.9E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 Pfam PF13534 4Fe-4S dicluster domain 258 322 5.4E-11 T 13-10-2018 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 PRINTS PR00069 Aldo-keto reductase signature 38 62 7.7E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 PRINTS PR00069 Aldo-keto reductase signature 127 144 7.7E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 PRINTS PR00069 Aldo-keto reductase signature 90 108 7.7E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 Gene3D G3DSA:3.20.20.100 1 237 7.5E-62 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 307 318 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 SUPERFAMILY SSF46548 253 332 1.78E-8 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 Pfam PF00248 Aldo/keto reductase family 19 198 6.7E-35 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CLM_3833 0587b7e64762e7c9ce0ab83357536f81 336 SUPERFAMILY SSF51430 1 279 2.23E-61 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 Gene3D G3DSA:1.20.272.40 128 448 3.1E-111 T 13-10-2018 CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 Gene3D G3DSA:3.40.50.300 130 284 3.1E-111 T 13-10-2018 CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 Pfam PF00271 Helicase conserved C-terminal domain 302 405 3.7E-12 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 Gene3D G3DSA:3.40.50.300 285 430 3.1E-111 T 13-10-2018 CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 Pfam PF12513 Mitochondrial degradasome RNA helicase subunit C terminal 538 584 3.3E-9 T 13-10-2018 IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain GO:0016817 CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 SUPERFAMILY SSF52540 141 414 1.88E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1540 deffd4f24bbb9d7c3a896154026ac503 588 SMART SM00490 316 405 1.6E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1995 b81628c67ad4421efa1aa762758564ff 171 Gene3D G3DSA:3.10.120.10 91 168 5.3E-11 T 13-10-2018 IPR036400 Cytochrome b5-like heme/steroid binding domain superfamily CLM_1995 b81628c67ad4421efa1aa762758564ff 171 SMART SM01117 99 171 1.3E-11 T 13-10-2018 IPR001199 Cytochrome b5-like heme/steroid binding domain CLM_1995 b81628c67ad4421efa1aa762758564ff 171 SUPERFAMILY SSF55856 93 160 3.93E-14 T 13-10-2018 IPR036400 Cytochrome b5-like heme/steroid binding domain superfamily CLM_1995 b81628c67ad4421efa1aa762758564ff 171 Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain 100 170 9.3E-11 T 13-10-2018 IPR001199 Cytochrome b5-like heme/steroid binding domain CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 Gene3D G3DSA:3.30.230.10 1 156 1.0E-56 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 SUPERFAMILY SSF55060 159 279 3.17E-27 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 PIRSF PIRSF010376 1 280 1.0E-91 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 Pfam PF00288 GHMP kinases N terminal domain 83 141 1.7E-5 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 Pfam PF08544 GHMP kinases C terminal 195 272 3.0E-10 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 1 277 33.878 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 SUPERFAMILY SSF54211 3 155 1.9E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 273 3.2E-80 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CLM_0164 d352620cecbd5fe3b354bef6df722a2b 280 Gene3D G3DSA:3.30.70.890 159 279 1.2E-26 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CLM_0385 04c3130092eb4863d40bafec08199b5e 190 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 189 9.0E-76 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CLM_0385 04c3130092eb4863d40bafec08199b5e 190 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 38.831 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CLM_0385 04c3130092eb4863d40bafec08199b5e 190 Gene3D G3DSA:3.40.50.2020 3 188 5.2E-53 T 13-10-2018 CLM_0385 04c3130092eb4863d40bafec08199b5e 190 SUPERFAMILY SSF53271 2 187 2.13E-43 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_0385 04c3130092eb4863d40bafec08199b5e 190 Pfam PF00156 Phosphoribosyl transferase domain 34 157 3.1E-9 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 Gene3D G3DSA:3.40.50.300 831 1032 5.4E-83 T 13-10-2018 CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 SUPERFAMILY SSF52540 826 1076 1.72E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 SMART SM00490 936 1018 4.7E-25 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 Pfam PF08455 Bacterial SNF2 helicase associated 231 603 3.9E-92 T 13-10-2018 IPR013663 Helicase, SWF/SNF/SWI type, bacterial CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 SUPERFAMILY SSF52540 568 824 5.57E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 Pfam PF00271 Helicase conserved C-terminal domain 907 1018 3.7E-20 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 Pfam PF00176 SNF2 family N-terminal domain 627 895 1.5E-61 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 SMART SM00487 606 793 2.7E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 Gene3D G3DSA:1.20.120.850 846 1056 5.4E-83 T 13-10-2018 CLM_1908 fe6bcf1f94c500bcdc87b4e8050a53a1 1077 Gene3D G3DSA:3.40.50.10810 576 823 1.0E-67 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 Gene3D G3DSA:2.40.50.1020 126 221 5.6E-21 T 13-10-2018 CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 Pfam PF04397 LytTr DNA-binding domain 138 226 4.7E-22 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 SMART SM00850 135 227 6.8E-25 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 Pfam PF00072 Response regulator receiver domain 5 114 1.0E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 Gene3D G3DSA:3.40.50.2300 1 125 1.7E-22 T 13-10-2018 CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 SMART SM00448 2 115 8.7E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1209 0dba20305a63e02ded2df824957fcdcc 235 SUPERFAMILY SSF52172 1 126 2.7E-18 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3494 d85a7acbc2637f67e5834bf85529d6d0 111 Gene3D G3DSA:3.30.750.24 6 111 1.2E-31 T 13-10-2018 IPR036513 STAS domain superfamily CLM_3494 d85a7acbc2637f67e5834bf85529d6d0 111 Pfam PF01740 STAS domain 7 107 4.7E-24 T 13-10-2018 IPR002645 STAS domain CLM_3494 d85a7acbc2637f67e5834bf85529d6d0 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 3 106 1.0E-30 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 CLM_3494 d85a7acbc2637f67e5834bf85529d6d0 111 TIGRFAM TIGR02886 spore_II_AA: anti-sigma F factor antagonist 4 108 2.3E-42 T 13-10-2018 IPR014237 Anti-sigma F factor antagonist GO:0006355|GO:0030435|GO:0045152 CLM_3494 d85a7acbc2637f67e5834bf85529d6d0 111 SUPERFAMILY SSF52091 3 109 1.24E-30 T 13-10-2018 IPR036513 STAS domain superfamily CLM_2429 19947251eb73763439404925913dd8f5 119 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 13 102 7.3E-21 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CLM_2429 19947251eb73763439404925913dd8f5 119 Gene3D G3DSA:3.30.420.130 1 112 1.5E-29 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily CLM_2429 19947251eb73763439404925913dd8f5 119 SUPERFAMILY SSF53146 1 112 1.2E-27 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily CLM_1519 b68814874a4b35e7763b7f64b424fe3b 281 Pfam PF01380 SIS domain 126 254 1.1E-25 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_1519 b68814874a4b35e7763b7f64b424fe3b 281 Gene3D G3DSA:3.40.50.10490 94 279 3.0E-50 T 13-10-2018 CLM_1519 b68814874a4b35e7763b7f64b424fe3b 281 Gene3D G3DSA:1.10.10.10 1 75 3.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1519 b68814874a4b35e7763b7f64b424fe3b 281 SUPERFAMILY SSF53697 95 269 5.11E-44 T 13-10-2018 CLM_1519 b68814874a4b35e7763b7f64b424fe3b 281 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 73 5.6E-17 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_1519 b68814874a4b35e7763b7f64b424fe3b 281 SUPERFAMILY SSF46689 1 74 9.5E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 Gene3D G3DSA:3.80.10.10 26 331 5.8E-48 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 Pfam PF12799 Leucine Rich repeats (2 copies) 168 207 4.6E-8 T 13-10-2018 IPR025875 Leucine rich repeat 4 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SMART SM00365 167 188 3.3 T 13-10-2018 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SMART SM00365 233 254 290.0 T 13-10-2018 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SMART SM00365 211 232 22.0 T 13-10-2018 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SMART SM00365 189 210 0.15 T 13-10-2018 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SMART SM00365 299 320 600.0 T 13-10-2018 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SMART SM00365 255 279 530.0 T 13-10-2018 CLM_2183 4f1153e583830f3d9aa0a132ad8924c7 332 SUPERFAMILY SSF52058 86 325 2.21E-39 T 13-10-2018 CLM_1098 f9fc771608fd9d60fa6030992380d661 252 Gene3D G3DSA:3.30.950.10 113 232 1.2E-45 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CLM_1098 f9fc771608fd9d60fa6030992380d661 252 SUPERFAMILY SSF53790 3 249 1.7E-66 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_1098 f9fc771608fd9d60fa6030992380d661 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 209 8.3E-45 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_1098 f9fc771608fd9d60fa6030992380d661 252 Gene3D G3DSA:3.40.1010.10 1 112 8.0E-31 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_1098 f9fc771608fd9d60fa6030992380d661 252 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CLM_1098 f9fc771608fd9d60fa6030992380d661 252 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 5 249 1.1E-100 T 13-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 CLM_3152 8c056ccf3c2179a8844ff60a5539ef4c 106 Gene3D G3DSA:3.30.110.70 2 106 2.8E-41 T 13-10-2018 CLM_3152 8c056ccf3c2179a8844ff60a5539ef4c 106 SUPERFAMILY SSF117782 1 106 2.22E-39 T 13-10-2018 IPR035439 UPF0145 domain superfamily CLM_3152 8c056ccf3c2179a8844ff60a5539ef4c 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 23.948 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CLM_3152 8c056ccf3c2179a8844ff60a5539ef4c 106 Pfam PF01906 Putative heavy-metal-binding 1 104 2.2E-40 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CLM_0438 925022f2c71e0a49c614427e99686b72 223 PIRSF PIRSF006091 1 194 5.3E-50 T 13-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 CLM_0438 925022f2c71e0a49c614427e99686b72 223 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 10 183 2.3E-41 T 13-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 CLM_0438 925022f2c71e0a49c614427e99686b72 223 Pfam PF04205 FMN-binding domain 91 178 1.1E-22 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 CLM_0438 925022f2c71e0a49c614427e99686b72 223 SMART SM00900 91 181 2.0E-31 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 CLM_0438 925022f2c71e0a49c614427e99686b72 223 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 3 183 25.551 T 13-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 CLM_2170 757022259fb470cc168c680159c300a4 585 Pfam PF00664 ABC transporter transmembrane region 22 299 8.7E-48 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_2170 757022259fb470cc168c680159c300a4 585 SUPERFAMILY SSF52540 340 581 5.54E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2170 757022259fb470cc168c680159c300a4 585 Pfam PF00005 ABC transporter 361 510 7.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2170 757022259fb470cc168c680159c300a4 585 SMART SM00382 370 556 2.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2170 757022259fb470cc168c680159c300a4 585 SUPERFAMILY SSF90123 2 328 2.22E-76 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2170 757022259fb470cc168c680159c300a4 585 Gene3D G3DSA:1.20.1560.10 1 330 1.0E-87 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2170 757022259fb470cc168c680159c300a4 585 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2170 757022259fb470cc168c680159c300a4 585 Gene3D G3DSA:3.40.50.300 341 584 2.0E-90 T 13-10-2018 CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 Pfam PF00664 ABC transporter transmembrane region 21 291 4.0E-28 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 SUPERFAMILY SSF52540 328 579 5.92E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 SMART SM00382 370 556 1.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 Gene3D G3DSA:1.20.1560.10 1 324 1.1E-48 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 Pfam PF00005 ABC transporter 361 510 6.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 SUPERFAMILY SSF90123 10 325 1.83E-57 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 Gene3D G3DSA:3.40.50.300 327 593 2.2E-83 T 13-10-2018 CLM_2586 46ace0e4a6c30f97a4f751976d753628 599 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2209 cc8b8328172da70a2eb1cda8ba0f9178 307 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 304 5.4E-95 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 CLM_2209 cc8b8328172da70a2eb1cda8ba0f9178 307 Pfam PF00294 pfkB family carbohydrate kinase 12 287 9.8E-47 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CLM_2209 cc8b8328172da70a2eb1cda8ba0f9178 307 Gene3D G3DSA:3.40.1190.20 1 307 7.2E-83 T 13-10-2018 IPR029056 Ribokinase-like CLM_2209 cc8b8328172da70a2eb1cda8ba0f9178 307 PIRSF PIRSF000535 1 306 9.7E-73 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CLM_2209 cc8b8328172da70a2eb1cda8ba0f9178 307 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 304 9.8E-94 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CLM_2209 cc8b8328172da70a2eb1cda8ba0f9178 307 SUPERFAMILY SSF53613 1 284 3.27E-62 T 13-10-2018 IPR029056 Ribokinase-like CLM_3621 8380812ed115ff3c4405fd9ff9954682 154 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 8 147 4.0E-30 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 CLM_3621 8380812ed115ff3c4405fd9ff9954682 154 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 4 142 7.2E-26 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CLM_3621 8380812ed115ff3c4405fd9ff9954682 154 Gene3D G3DSA:3.60.21.10 1 151 7.9E-39 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_3621 8380812ed115ff3c4405fd9ff9954682 154 SUPERFAMILY SSF56300 10 149 6.96E-31 T 13-10-2018 CLM_1433 3e0fbfd928ce94ae895c57bcb72cbbc3 242 Gene3D G3DSA:3.30.240.20 169 229 2.3E-20 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CLM_1433 3e0fbfd928ce94ae895c57bcb72cbbc3 242 Pfam PF04239 Protein of unknown function (DUF421) 88 204 5.7E-36 T 13-10-2018 IPR007353 Protein of unknown function DUF421 CLM_1433 3e0fbfd928ce94ae895c57bcb72cbbc3 242 Gene3D G3DSA:3.30.240.20 81 154 1.3E-23 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 SUPERFAMILY SSF47413 3 67 1.13E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 Pfam PF01381 Helix-turn-helix 9 63 8.4E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 SUPERFAMILY SSF51182 56 181 4.86E-30 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 Pfam PF07883 Cupin domain 108 175 8.8E-16 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 SMART SM00530 8 63 1.9E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 Gene3D G3DSA:1.10.260.40 1 71 1.7E-19 T 13-10-2018 CLM_0410 e4cfed55bed6414879480fa3dac5003c 181 Gene3D G3DSA:2.60.120.10 72 176 3.9E-22 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 Pfam PF00512 His Kinase A (phospho-acceptor) domain 86 145 4.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 193 285 1.2E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 Gene3D G3DSA:3.30.565.10 152 295 3.1E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 PRINTS PR01780 Lantibiotic regulatory protein signature 189 204 1.1E-5 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 PRINTS PR01780 Lantibiotic regulatory protein signature 90 106 1.1E-5 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 PRINTS PR01780 Lantibiotic regulatory protein signature 251 266 1.1E-5 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 SUPERFAMILY SSF55874 152 287 1.57E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 SUPERFAMILY SSF47384 72 145 1.92E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 SMART SM00387 193 300 1.4E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 SMART SM00388 81 147 7.3E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0930 bfee6a112f17d5a5d8c9942f3fca1990 301 Gene3D G3DSA:1.10.287.130 74 146 9.5E-20 T 13-10-2018 CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 Pfam PF08281 Sigma-70, region 4 113 164 3.9E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 Gene3D G3DSA:1.10.1740.10 1 114 2.0E-21 T 13-10-2018 CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 Gene3D G3DSA:1.10.10.10 115 169 4.5E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 TIGRFAM TIGR02954 Sig70_famx3: RNA polymerase sigma-70 factor, TIGR02954 family 1 169 6.9E-73 T 13-10-2018 IPR014300 RNA polymerase sigma-V type CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 Pfam PF04542 Sigma-70 region 2 22 88 1.1E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 167 1.4E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 SUPERFAMILY SSF88946 1 92 5.69E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0979 0857db4288cd88fa8f7e8376cf777b8d 170 SUPERFAMILY SSF88659 104 168 1.51E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_1516 cf6dda055537940536c53bfe0653aad8 253 SUPERFAMILY SSF52540 4 229 6.12E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1516 cf6dda055537940536c53bfe0653aad8 253 Gene3D G3DSA:3.40.50.300 2 253 3.4E-63 T 13-10-2018 CLM_1516 cf6dda055537940536c53bfe0653aad8 253 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1516 cf6dda055537940536c53bfe0653aad8 253 SMART SM00382 28 216 3.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1516 cf6dda055537940536c53bfe0653aad8 253 Pfam PF00005 ABC transporter 19 167 2.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 Pfam PF00472 RF-1 domain 188 297 2.1E-42 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 Gene3D G3DSA:1.20.58.410 1 82 6.1E-15 T 13-10-2018 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 Gene3D G3DSA:3.30.70.1660 89 317 3.2E-97 T 13-10-2018 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 Gene3D G3DSA:3.30.160.20 185 280 3.2E-97 T 13-10-2018 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 325 35.278 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 204 220 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 322 3.8E-147 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 SMART SM00937 45 154 7.7E-51 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 SUPERFAMILY SSF75620 1 322 1.44E-126 T 13-10-2018 CLM_0222 02963e8ef958dc28e5ed1f1f758035b4 325 Pfam PF03462 PCRF domain 1 179 4.6E-58 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CLM_3799 0f7be9ca34d24573822f5db618275f81 301 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3799 0f7be9ca34d24573822f5db618275f81 301 Gene3D G3DSA:3.40.50.300 1 237 1.4E-59 T 13-10-2018 CLM_3799 0f7be9ca34d24573822f5db618275f81 301 SUPERFAMILY SSF52540 3 218 1.21E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3799 0f7be9ca34d24573822f5db618275f81 301 Pfam PF00005 ABC transporter 20 160 5.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3799 0f7be9ca34d24573822f5db618275f81 301 SMART SM00382 28 211 3.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1700 731b4c6f0c573d75e4e1ec753c1b3245 116 Pfam PF06947 Protein of unknown function (DUF1290) 21 106 3.4E-38 T 13-10-2018 IPR009709 Protein of unknown function DUF1290 CLM_1700 731b4c6f0c573d75e4e1ec753c1b3245 116 PIRSF PIRSF018579 1 112 5.7E-47 T 13-10-2018 IPR009709 Protein of unknown function DUF1290 CLM_0615 7378c360604f2f903a5680c79f49f29a 345 Pfam PF04055 Radical SAM superfamily 7 153 6.7E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_0615 7378c360604f2f903a5680c79f49f29a 345 Gene3D G3DSA:3.20.20.70 1 334 2.1E-54 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0615 7378c360604f2f903a5680c79f49f29a 345 Pfam PF13353 4Fe-4S single cluster domain 4 132 1.4E-12 T 13-10-2018 CLM_0615 7378c360604f2f903a5680c79f49f29a 345 SUPERFAMILY SSF102114 3 298 1.44E-37 T 13-10-2018 CLM_3924 42e08820223156d69fd8f9b63d469858 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.024 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CLM_3924 42e08820223156d69fd8f9b63d469858 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 4.4E-28 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 CLM_3924 42e08820223156d69fd8f9b63d469858 72 SUPERFAMILY SSF50249 1 70 2.86E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3924 42e08820223156d69fd8f9b63d469858 72 Gene3D G3DSA:2.40.50.140 1 72 2.5E-36 T 13-10-2018 CLM_3924 42e08820223156d69fd8f9b63d469858 72 SMART SM00316 2 72 0.0011 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_3924 42e08820223156d69fd8f9b63d469858 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 6.0E-37 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 PIRSF PIRSF001619 1 318 4.0E-109 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 SMART SM00876 228 318 5.3E-29 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 Gene3D G3DSA:3.20.20.70 15 318 4.0E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 TIGRFAM TIGR00433 bioB: biotin synthase 24 317 1.1E-118 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 Pfam PF04055 Radical SAM superfamily 61 216 6.2E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 SUPERFAMILY SSF102114 18 317 7.06E-68 T 13-10-2018 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 SMART SM00729 52 257 7.4E-33 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 Hamap MF_01694 Biotin synthase [bioB]. 15 318 40.737 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_2468 3fd3af8185750f2920db41ae08d9bd50 318 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 228 317 3.4E-15 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_0378 904651d3e50f92e63d819a4cd7678b6c 312 SUPERFAMILY SSF53807 44 302 1.96E-45 T 13-10-2018 CLM_0378 904651d3e50f92e63d819a4cd7678b6c 312 Gene3D G3DSA:3.40.50.1980 41 151 4.5E-25 T 13-10-2018 CLM_0378 904651d3e50f92e63d819a4cd7678b6c 312 Gene3D G3DSA:3.40.50.1980 152 311 3.1E-50 T 13-10-2018 CLM_0378 904651d3e50f92e63d819a4cd7678b6c 312 Pfam PF01497 Periplasmic binding protein 106 284 4.4E-26 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 SMART SM01301 106 239 3.2E-54 T 13-10-2018 CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 SUPERFAMILY SSF52799 27 303 5.52E-36 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 Pfam PF14323 GxGYxYP putative glycoside hydrolase C-terminal domain 578 814 1.4E-82 T 13-10-2018 IPR025832 GxGYxYP putative glycoside hydrolase, C-terminal CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 Gene3D G3DSA:3.90.190.10 30 307 7.2E-84 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 219 229 - T 13-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 Gene3D G3DSA:3.20.20.490 563 820 3.8E-89 T 13-10-2018 IPR038410 GxGYxYP putative glycoside hydrolase, C-terminal domain superfamily CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 Pfam PF16216 GxGYxY sequence motif in domain of unknown function N-terminal 347 559 1.2E-74 T 13-10-2018 IPR032626 GxGYxYP putative glycoside hydrolase, N-terminal CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 Pfam PF14566 Inositol hexakisphosphate 106 239 2.1E-25 T 13-10-2018 CLM_2419 5c53533ac57af89f56605ea2ec59c9c8 820 ProDom PD069361 HYDROLASE VIRULENCE PLASMID AVRBS1.1 HEXAPHOSPHATE TYROSINE PHOSPHOHYDROLASE PRECURSOR MYO-INOSITOL AVIRULENCE 209 297 4.0E-12 T 13-10-2018 CLM_1290 cdc0e3a34b11c28ba0fdf2fc51118c59 186 SUPERFAMILY SSF52499 5 184 5.36E-29 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CLM_1290 cdc0e3a34b11c28ba0fdf2fc51118c59 186 Pfam PF00857 Isochorismatase family 5 185 2.1E-18 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CLM_1290 cdc0e3a34b11c28ba0fdf2fc51118c59 186 Gene3D G3DSA:3.40.50.850 3 186 2.1E-40 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CLM_0327 ef685e6f21e224347c79c514ac27ea42 507 Gene3D G3DSA:3.30.1360.60 426 507 9.4E-25 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0327 ef685e6f21e224347c79c514ac27ea42 507 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 414 491 9.7E-13 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_0327 ef685e6f21e224347c79c514ac27ea42 507 Pfam PF00367 phosphotransferase system, EIIB 434 466 6.1E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_0327 ef685e6f21e224347c79c514ac27ea42 507 Pfam PF02378 Phosphotransferase system, EIIC 16 346 1.9E-61 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_0327 ef685e6f21e224347c79c514ac27ea42 507 SUPERFAMILY SSF55604 431 505 2.88E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_4098 0366633927eb0d6771a840ce77b8b90d 352 Gene3D G3DSA:3.20.20.70 10 352 4.8E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4098 0366633927eb0d6771a840ce77b8b90d 352 Pfam PF03060 Nitronate monooxygenase 7 350 1.0E-61 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 CLM_4098 0366633927eb0d6771a840ce77b8b90d 352 SUPERFAMILY SSF51412 10 348 1.47E-52 T 13-10-2018 CLM_3177 e26692d6011e5bcccbdb6c6dcce63bfc 342 Pfam PF00268 Ribonucleotide reductase, small chain 28 300 8.7E-80 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3177 e26692d6011e5bcccbdb6c6dcce63bfc 342 Gene3D G3DSA:1.10.620.20 4 313 6.3E-94 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 CLM_3177 e26692d6011e5bcccbdb6c6dcce63bfc 342 PIRSF PIRSF000355 1 341 1.4E-127 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CLM_3177 e26692d6011e5bcccbdb6c6dcce63bfc 342 SUPERFAMILY SSF47240 15 336 8.12E-91 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_3523 f300fe460f8762d808851642ba0406e7 486 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 375 468 3.5E-10 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CLM_3523 f300fe460f8762d808851642ba0406e7 486 SUPERFAMILY SSF55904 345 485 2.09E-35 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CLM_3523 f300fe460f8762d808851642ba0406e7 486 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 9 373 1.3E-94 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CLM_3523 f300fe460f8762d808851642ba0406e7 486 Gene3D G3DSA:3.90.105.10 423 479 6.9E-20 T 13-10-2018 CLM_3523 f300fe460f8762d808851642ba0406e7 486 Gene3D G3DSA:3.40.640.10 9 286 4.3E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3523 f300fe460f8762d808851642ba0406e7 486 SUPERFAMILY SSF53383 9 387 7.1E-98 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 SUPERFAMILY SSF52374 106 442 1.31E-98 T 13-10-2018 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Gene3D G3DSA:3.30.1360.70 2 103 2.4E-33 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Pfam PF05746 DALR anticodon binding domain 448 563 1.7E-31 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 SUPERFAMILY SSF47323 442 563 1.31E-32 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 3 81 4.2E-18 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 SMART SM01016 1 82 2.5E-26 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 SUPERFAMILY SSF55190 3 103 4.05E-26 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Pfam PF00750 tRNA synthetases class I (R) 92 434 8.6E-97 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 PRINTS PR01038 Arginyl-tRNA synthetase signature 151 164 5.7E-21 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 PRINTS PR01038 Arginyl-tRNA synthetase signature 112 127 5.7E-21 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 PRINTS PR01038 Arginyl-tRNA synthetase signature 127 143 5.7E-21 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 PRINTS PR01038 Arginyl-tRNA synthetase signature 295 316 5.7E-21 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 SMART SM00836 448 563 2.1E-42 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Gene3D G3DSA:1.10.730.10 442 563 8.4E-35 T 13-10-2018 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 9 563 9.5E-155 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Hamap MF_00123 Arginine--tRNA ligase [argS]. 1 563 26.041 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 120 131 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_1232 0137d26b7cbb0e73fe66d13a02e29715 563 Gene3D G3DSA:3.40.50.620 104 441 3.8E-124 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3447 c2d16b19336fdc47f31a76b188782f8c 69 Gene3D G3DSA:1.10.260.40 1 68 2.9E-13 T 13-10-2018 CLM_3447 c2d16b19336fdc47f31a76b188782f8c 69 SMART SM00530 6 61 8.5E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3447 c2d16b19336fdc47f31a76b188782f8c 69 SUPERFAMILY SSF47413 2 64 1.44E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_3447 c2d16b19336fdc47f31a76b188782f8c 69 Pfam PF01381 Helix-turn-helix 7 61 4.4E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1204 608b52f026f08c859b0036b7facbb642 314 SUPERFAMILY SSF53807 38 306 2.43E-64 T 13-10-2018 CLM_1204 608b52f026f08c859b0036b7facbb642 314 Gene3D G3DSA:3.40.50.12260 184 289 7.1E-92 T 13-10-2018 CLM_1204 608b52f026f08c859b0036b7facbb642 314 Gene3D G3DSA:3.40.50.1980 48 306 7.1E-92 T 13-10-2018 CLM_1204 608b52f026f08c859b0036b7facbb642 314 Pfam PF01497 Periplasmic binding protein 56 290 4.9E-33 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_1825 c9adb6a1de0c5d26358155cd7572b12e 247 Pfam PF12730 ABC-2 family transporter protein 8 151 3.3E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_1825 c9adb6a1de0c5d26358155cd7572b12e 247 TIGRFAM TIGR03733 lanti_perm_MutG: lantibiotic protection ABC transporter permease subunit, MutG family 6 244 1.2E-95 T 13-10-2018 IPR022294 Lantibiotic protection ABC transporter permease subunit, MutG family CLM_2207 4af62ddcb7c22ab6a8334e08f6babb15 146 Gene3D G3DSA:3.40.930.10 1 146 1.0E-45 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CLM_2207 4af62ddcb7c22ab6a8334e08f6babb15 146 SUPERFAMILY SSF55804 1 146 7.72E-44 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CLM_2207 4af62ddcb7c22ab6a8334e08f6babb15 146 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CLM_2207 4af62ddcb7c22ab6a8334e08f6babb15 146 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 146 4.5E-42 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CLM_2207 4af62ddcb7c22ab6a8334e08f6babb15 146 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 7 133 6.4E-41 T 13-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 CLM_0914 fe725abc387e4d2a760f409166786517 177 Pfam PF09851 Short C-terminal domain 148 175 4.0E-10 T 13-10-2018 IPR018649 SHOCT domain CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 Gene3D G3DSA:2.30.250.10 154 291 5.2E-152 T 13-10-2018 IPR023358 Peptidase M18, domain 2 GO:0004177 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 78 507 4.9E-90 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 SUPERFAMILY SSF53187 56 508 5.91E-105 T 13-10-2018 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 Gene3D G3DSA:3.40.630.10 89 499 5.2E-152 T 13-10-2018 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 SUPERFAMILY SSF101821 155 287 3.57E-36 T 13-10-2018 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 336 354 1.2E-28 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 212 229 1.2E-28 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 176 196 1.2E-28 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 143 159 1.2E-28 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 381 397 1.2E-28 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_2967 2bacd2f11cc06a277ad780bdd5c21f34 511 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 475 490 1.2E-28 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_4067 034de2e085b7a567244a111161fffbd7 190 SUPERFAMILY SSF48498 78 189 2.0E-26 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_4067 034de2e085b7a567244a111161fffbd7 190 Pfam PF16859 Bacterial transcriptional repressor C-terminal 74 183 3.7E-29 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CLM_4067 034de2e085b7a567244a111161fffbd7 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 61 1.9E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_4067 034de2e085b7a567244a111161fffbd7 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_4067 034de2e085b7a567244a111161fffbd7 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_4067 034de2e085b7a567244a111161fffbd7 190 Gene3D G3DSA:1.10.357.10 56 190 7.1E-34 T 13-10-2018 CLM_4067 034de2e085b7a567244a111161fffbd7 190 SUPERFAMILY SSF46689 7 65 2.24E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_4067 034de2e085b7a567244a111161fffbd7 190 Gene3D G3DSA:1.10.10.60 1 55 5.9E-27 T 13-10-2018 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 Gene3D G3DSA:3.40.1550.10 45 230 3.1E-59 T 13-10-2018 IPR028976 CheC-like superfamily CLM_3110 2fd86888bcf919f421167019a456ad5c 331 Pfam PF02154 Flagellar motor switch protein FliM 39 229 3.4E-61 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 SUPERFAMILY SSF103039 45 229 2.88E-28 T 13-10-2018 IPR028976 CheC-like superfamily CLM_3110 2fd86888bcf919f421167019a456ad5c 331 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 2.4E-24 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 PRINTS PR00955 Flagellar motor switch protein FliM signature 115 134 2.4E-24 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 PRINTS PR00955 Flagellar motor switch protein FliM signature 90 106 2.4E-24 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 2.4E-24 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 SUPERFAMILY SSF101801 252 326 9.16E-16 T 13-10-2018 IPR036429 SpoA-like superfamily CLM_3110 2fd86888bcf919f421167019a456ad5c 331 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 323 2.1E-100 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_3110 2fd86888bcf919f421167019a456ad5c 331 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 323 9.6E-19 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) CLM_3110 2fd86888bcf919f421167019a456ad5c 331 Gene3D G3DSA:2.30.330.10 239 329 1.6E-11 T 13-10-2018 IPR036429 SpoA-like superfamily CLM_3110 2fd86888bcf919f421167019a456ad5c 331 PIRSF PIRSF002888 1 331 4.3E-116 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CLM_0003 fd4c164ac9e03443d8e0e1949e2702ba 68 SUPERFAMILY SSF55174 1 67 3.79E-19 T 13-10-2018 CLM_0003 fd4c164ac9e03443d8e0e1949e2702ba 68 Gene3D G3DSA:3.10.290.10 1 68 7.8E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_0003 fd4c164ac9e03443d8e0e1949e2702ba 68 TIGRFAM TIGR02988 YaaA_near_RecF: S4 domain protein YaaA 3 62 5.9E-26 T 13-10-2018 IPR014330 RNA-binding S4-related,YaaA CLM_0003 fd4c164ac9e03443d8e0e1949e2702ba 68 Pfam PF13275 S4 domain 4 67 4.1E-25 T 13-10-2018 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 Gene3D G3DSA:3.30.70.100 2 69 1.7E-18 T 13-10-2018 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 Pfam PF00403 Heavy-metal-associated domain 7 63 1.1E-14 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 PRINTS PR00944 Copper ion binding protein signature 14 27 1.0E-6 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 PRINTS PR00944 Copper ion binding protein signature 27 40 1.0E-6 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 PRINTS PR00944 Copper ion binding protein signature 2 14 1.0E-6 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 PRINTS PR00944 Copper ion binding protein signature 52 65 1.0E-6 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CLM_1464 d0e1a9bf6b16e9575faebcc42dc84440 71 SUPERFAMILY SSF55008 2 65 3.93E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_0920 fb0deea2ec7eccdff8dcc9e951bf8e01 404 Pfam PF01547 Bacterial extracellular solute-binding protein 55 153 8.6E-5 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CLM_0920 fb0deea2ec7eccdff8dcc9e951bf8e01 404 Gene3D G3DSA:3.40.190.10 147 395 1.3E-163 T 13-10-2018 CLM_0920 fb0deea2ec7eccdff8dcc9e951bf8e01 404 TIGRFAM TIGR04541 thiaminase_BcmE: thiamine pyridinylase 11 392 8.0E-217 T 13-10-2018 IPR030901 Thiaminase-1 KEGG: 00730+2.5.1.2 CLM_0920 fb0deea2ec7eccdff8dcc9e951bf8e01 404 SUPERFAMILY SSF53850 39 401 1.29E-46 T 13-10-2018 CLM_0920 fb0deea2ec7eccdff8dcc9e951bf8e01 404 Gene3D G3DSA:3.40.190.10 40 363 1.3E-163 T 13-10-2018 CLM_0099 9fb0359fbc75b3c214c517531c7d69c1 314 Gene3D G3DSA:3.40.50.300 2 150 1.4E-39 T 13-10-2018 CLM_0099 9fb0359fbc75b3c214c517531c7d69c1 314 Pfam PF13177 DNA polymerase III, delta subunit 9 152 1.7E-33 T 13-10-2018 CLM_0099 9fb0359fbc75b3c214c517531c7d69c1 314 SUPERFAMILY SSF52540 19 174 4.36E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0099 9fb0359fbc75b3c214c517531c7d69c1 314 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 230 312 5.3E-6 T 13-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3064 c54bf3ffb29b2966fa56c683a65fd76b 336 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 175 299 1.5E-5 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CLM_3064 c54bf3ffb29b2966fa56c683a65fd76b 336 Gene3D G3DSA:3.40.50.2000 149 291 1.6E-36 T 13-10-2018 CLM_3064 c54bf3ffb29b2966fa56c683a65fd76b 336 Gene3D G3DSA:3.40.50.11190 1 148 3.4E-25 T 13-10-2018 CLM_3064 c54bf3ffb29b2966fa56c683a65fd76b 336 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 1 272 3.6E-73 T 13-10-2018 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase CLM_3064 c54bf3ffb29b2966fa56c683a65fd76b 336 SUPERFAMILY SSF53756 175 267 1.88E-6 T 13-10-2018 CLM_3811 ea9fdf913ca00dff55b07fe8621144a6 116 SUPERFAMILY SSF56276 3 114 1.96E-34 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 CLM_3811 ea9fdf913ca00dff55b07fe8621144a6 116 Pfam PF02675 S-adenosylmethionine decarboxylase 7 113 1.4E-36 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CLM_3811 ea9fdf913ca00dff55b07fe8621144a6 116 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 113 3.1E-42 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CLM_3811 ea9fdf913ca00dff55b07fe8621144a6 116 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 114 25.226 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CLM_3811 ea9fdf913ca00dff55b07fe8621144a6 116 Gene3D G3DSA:3.30.360.110 1 62 3.0E-19 T 13-10-2018 CLM_3811 ea9fdf913ca00dff55b07fe8621144a6 116 Gene3D G3DSA:3.30.160.750 63 116 1.0E-19 T 13-10-2018 CLM_1149 13d8e6d99ed760d41f753b2813f4d937 251 Pfam PF13803 Domain of unknown function (DUF4184) 1 248 4.5E-76 T 13-10-2018 IPR025238 Protein of unknown function DUF4184 CLM_0556 4806a75d6dda6b7e8acd3fcffd83c109 1176 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1060 1131 4.8E-14 T 13-10-2018 CLM_0556 4806a75d6dda6b7e8acd3fcffd83c109 1176 Gene3D G3DSA:3.40.50.300 1 302 1.5E-43 T 13-10-2018 CLM_0556 4806a75d6dda6b7e8acd3fcffd83c109 1176 Gene3D G3DSA:3.40.50.300 944 1175 1.8E-27 T 13-10-2018 CLM_0556 4806a75d6dda6b7e8acd3fcffd83c109 1176 Pfam PF13476 AAA domain 5 263 2.5E-23 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain CLM_0556 4806a75d6dda6b7e8acd3fcffd83c109 1176 SUPERFAMILY SSF52540 1 281 1.75E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0556 4806a75d6dda6b7e8acd3fcffd83c109 1176 SUPERFAMILY SSF52540 1 1150 1.75E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 545 557 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 Gene3D G3DSA:2.70.70.10 470 629 3.6E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 SUPERFAMILY SSF51261 478 627 6.45E-53 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 Gene3D G3DSA:3.30.1360.60 1 77 1.2E-30 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 627 4.8E-225 T 13-10-2018 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 SUPERFAMILY SSF55604 6 80 1.26E-23 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 Pfam PF00367 phosphotransferase system, EIIB 9 41 6.1E-17 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 482 606 1.3E-49 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 Pfam PF02378 Phosphotransferase system, EIIC 108 383 2.9E-33 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_1020 f6d72ae845ab1bec4f23c0c1344e9d2a 629 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 484 603 1.3E-42 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 SMART SM00471 325 431 1.7E-12 T 13-10-2018 IPR003607 HD/PDEase domain CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 7 513 2.6E-237 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 SUPERFAMILY SSF54791 201 297 6.65E-18 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 Gene3D G3DSA:3.30.1370.10 200 295 3.7E-9 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 Hamap MF_00335 Ribonuclease Y [rny]. 5 513 25.593 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 Pfam PF12072 Domain of unknown function (DUF3552) 6 198 4.5E-67 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 SUPERFAMILY SSF109604 310 466 2.24E-31 T 13-10-2018 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 Pfam PF00013 KH domain 206 263 3.4E-7 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 TIGRFAM TIGR00277 HDIG: HDIG domain 325 402 8.2E-22 T 13-10-2018 IPR006675 HDIG domain CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 SMART SM00322 201 268 3.2E-8 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 Pfam PF01966 HD domain 330 421 4.9E-19 T 13-10-2018 IPR006674 HD domain CLM_2696 09adac0ce10abf9b710401c2005f8c81 513 Gene3D G3DSA:1.10.3210.10 310 464 4.6E-19 T 13-10-2018 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 447 456 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 SUPERFAMILY SSF56762 4 456 1.19E-122 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 Pfam PF00374 Nickel-dependent hydrogenase 39 122 8.1E-22 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 Pfam PF00374 Nickel-dependent hydrogenase 330 456 2.8E-36 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 Pfam PF00374 Nickel-dependent hydrogenase 131 322 1.4E-41 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CLM_1997 72e25b1f43223d2400d8131e8d9b9ea6 471 Gene3D G3DSA:1.10.645.10 1 470 2.2E-146 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_0247 14baa2377fc3c9fc5dcef034aefa678f 173 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 14 169 3.4E-37 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 CLM_0247 14baa2377fc3c9fc5dcef034aefa678f 173 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 50 72 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CLM_0247 14baa2377fc3c9fc5dcef034aefa678f 173 Pfam PF01066 CDP-alcohol phosphatidyltransferase 9 72 1.7E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CLM_0247 14baa2377fc3c9fc5dcef034aefa678f 173 Gene3D G3DSA:1.20.120.1760 1 171 1.2E-13 T 13-10-2018 CLM_0098 7af6bb45e9a9d134df172fac705c4c90 109 Gene3D G3DSA:3.30.70.120 1 103 4.5E-42 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_0098 7af6bb45e9a9d134df172fac705c4c90 109 SUPERFAMILY SSF54913 1 109 5.28E-13 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CLM_0098 7af6bb45e9a9d134df172fac705c4c90 109 Pfam PF06153 Cyclic-di-AMP receptor 1 108 2.2E-49 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 Gene3D G3DSA:3.20.70.20 1 742 1.9E-293 T 13-10-2018 CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 6 742 0.0 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 SUPERFAMILY SSF51998 2 740 1.88E-274 T 13-10-2018 CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 Pfam PF01228 Glycine radical 616 723 1.2E-42 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 PIRSF PIRSF000379 2 742 0.0 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 Pfam PF02901 Pyruvate formate lyase-like 17 600 2.0E-201 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CLM_3627 d9cecc498230c17d40c004fbf63b1c2e 742 ProSitePatterns PS00850 Glycine radical domain signature. 712 720 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CLM_1147 541d335a4e8eaa272f2ce2594f1b48c4 719 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 499 700 5.7E-46 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal CLM_1147 541d335a4e8eaa272f2ce2594f1b48c4 719 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 11 170 9.7E-46 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal CLM_1147 541d335a4e8eaa272f2ce2594f1b48c4 719 SUPERFAMILY SSF58104 190 430 3.4E-5 T 13-10-2018 CLM_1147 541d335a4e8eaa272f2ce2594f1b48c4 719 Pfam PF12698 ABC-2 family transporter protein 23 164 5.5E-8 T 13-10-2018 CLM_3739 0738f29131224de736dbf73c439725c3 296 Pfam PF00175 Oxidoreductase NAD-binding domain 110 204 2.7E-6 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CLM_3739 0738f29131224de736dbf73c439725c3 296 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 221 257 7.7E-13 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_3739 0738f29131224de736dbf73c439725c3 296 Gene3D G3DSA:2.40.30.10 1 91 1.5E-24 T 13-10-2018 CLM_3739 0738f29131224de736dbf73c439725c3 296 SUPERFAMILY SSF52343 104 256 1.2E-33 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_3739 0738f29131224de736dbf73c439725c3 296 SUPERFAMILY SSF63380 1 91 1.51E-20 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_3739 0738f29131224de736dbf73c439725c3 296 PIRSF PIRSF006816 1 263 3.3E-68 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 CLM_3739 0738f29131224de736dbf73c439725c3 296 Gene3D G3DSA:3.40.50.80 107 211 1.3E-35 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_2828 88eb040863e991ce173ba9ea5b23415f 294 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 7 287 4.2E-81 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 CLM_2828 88eb040863e991ce173ba9ea5b23415f 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 287 3.8E-32 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_2828 88eb040863e991ce173ba9ea5b23415f 294 Gene3D G3DSA:1.10.3720.10 55 289 5.1E-32 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2828 88eb040863e991ce173ba9ea5b23415f 294 SUPERFAMILY SSF161098 10 281 4.02E-37 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 Gene3D G3DSA:1.20.1480.50 40 123 9.4E-11 T 13-10-2018 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 SMART SM00388 124 190 2.3E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 SUPERFAMILY SSF47384 107 191 2.16E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 SMART SM00387 234 342 4.4E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 Gene3D G3DSA:1.10.287.130 124 188 4.9E-19 T 13-10-2018 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 Pfam PF00672 HAMP domain 72 118 5.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 Gene3D G3DSA:3.30.565.10 189 342 1.9E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 SUPERFAMILY SSF55874 180 342 2.49E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 271 285 3.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 341 3.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 304 322 3.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 299 3.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 SUPERFAMILY SSF158472 72 120 1.31E-9 T 13-10-2018 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 Pfam PF00512 His Kinase A (phospho-acceptor) domain 125 189 1.1E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 341 4.8E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1050 19d7aa16d2e6b28431989e4541d6763e 342 SMART SM00304 70 123 8.3E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1334 a3aae6108415ea5af051214b89ecfe8f 266 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 4 257 8.2E-85 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 CLM_1334 a3aae6108415ea5af051214b89ecfe8f 266 PIRSF PIRSF006661 1 266 1.7E-105 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 CLM_1334 a3aae6108415ea5af051214b89ecfe8f 266 Pfam PF02540 NAD synthase 12 77 1.1E-5 T 13-10-2018 IPR022310 NAD/GMP synthase CLM_1334 a3aae6108415ea5af051214b89ecfe8f 266 Gene3D G3DSA:3.40.50.620 2 164 3.8E-28 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_1334 a3aae6108415ea5af051214b89ecfe8f 266 SUPERFAMILY SSF52402 17 217 1.01E-36 T 13-10-2018 CLM_3802 5ab59659529a53513077ff80977735b4 361 Pfam PF05913 Bacterial protein of unknown function (DUF871) 3 359 1.8E-143 T 13-10-2018 IPR008589 Protein of unknown function DUF871, prokaryotic CLM_3802 5ab59659529a53513077ff80977735b4 361 Gene3D G3DSA:3.20.20.70 1 242 1.3E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3802 5ab59659529a53513077ff80977735b4 361 SUPERFAMILY SSF51445 1 243 4.42E-91 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_3802 5ab59659529a53513077ff80977735b4 361 Gene3D G3DSA:2.40.100.10 243 360 7.3E-42 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CLM_3802 5ab59659529a53513077ff80977735b4 361 SUPERFAMILY SSF50891 246 359 1.02E-37 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CLM_1697 7c6b554db29bdba3a1375cf10728fc24 370 Pfam PF01098 Cell cycle protein 15 367 8.3E-109 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1697 7c6b554db29bdba3a1375cf10728fc24 370 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 12 365 4.5E-117 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1697 7c6b554db29bdba3a1375cf10728fc24 370 TIGRFAM TIGR02615 spoVE: stage V sporulation protein E 12 364 8.2E-155 T 13-10-2018 IPR013438 Sporulation stage V, protein E CLM_0703 27b833e0d94c1253144b822d56b0f964 636 SUPERFAMILY SSF53649 252 613 5.23E-63 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CLM_0703 27b833e0d94c1253144b822d56b0f964 636 PIRSF PIRSF005091 1 625 3.1E-183 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like CLM_0703 27b833e0d94c1253144b822d56b0f964 636 Gene3D G3DSA:3.40.720.10 247 549 1.3E-69 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CLM_0703 27b833e0d94c1253144b822d56b0f964 636 Pfam PF00884 Sulfatase 254 540 9.4E-40 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CLM_1127 ababb706c7fd5a96e2efb351449f7858 372 Gene3D G3DSA:3.40.50.1100 101 202 4.2E-77 T 13-10-2018 CLM_1127 ababb706c7fd5a96e2efb351449f7858 372 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 66 366 9.9E-55 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_1127 ababb706c7fd5a96e2efb351449f7858 372 SUPERFAMILY SSF53686 56 371 9.56E-60 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_1127 ababb706c7fd5a96e2efb351449f7858 372 Gene3D G3DSA:3.40.50.1100 65 371 4.2E-77 T 13-10-2018 CLM_3400 724e07b20a3b975a0197cc1355a1d0da 194 PIRSF PIRSF006305 1 194 1.3E-62 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CLM_3400 724e07b20a3b975a0197cc1355a1d0da 194 Gene3D G3DSA:3.90.950.10 1 194 9.7E-69 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CLM_3400 724e07b20a3b975a0197cc1355a1d0da 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 187 5.7E-59 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CLM_3400 724e07b20a3b975a0197cc1355a1d0da 194 Pfam PF02545 Maf-like protein 4 189 1.9E-59 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CLM_3400 724e07b20a3b975a0197cc1355a1d0da 194 SUPERFAMILY SSF52972 3 189 1.7E-61 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CLM_3400 724e07b20a3b975a0197cc1355a1d0da 194 Hamap MF_00528 Septum formation protein Maf [maf]. 3 194 31.228 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 Gene3D G3DSA:2.40.30.30 185 306 2.9E-41 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 Pfam PF06574 FAD synthetase 12 164 2.0E-43 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 Pfam PF01687 Riboflavin kinase 183 303 1.8E-36 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 SUPERFAMILY SSF52374 16 178 2.55E-26 T 13-10-2018 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 PIRSF PIRSF004491 1 305 2.1E-98 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 Gene3D G3DSA:3.40.50.620 2 184 7.5E-49 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2707 e6664a731eacb68d1d15072089d4b487 306 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 303 1.7E-76 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 SUPERFAMILY SSF82114 173 303 1.48E-43 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 CLM_2707 e6664a731eacb68d1d15072089d4b487 306 SMART SM00904 182 306 4.8E-52 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 CLM_1963 e1e4bb642a4d885758c8b1a35daaa448 352 Gene3D G3DSA:3.30.200.20 4 108 7.8E-19 T 13-10-2018 CLM_1963 e1e4bb642a4d885758c8b1a35daaa448 352 Gene3D G3DSA:3.90.1200.10 109 345 1.1E-67 T 13-10-2018 CLM_1963 e1e4bb642a4d885758c8b1a35daaa448 352 SUPERFAMILY SSF56112 20 347 1.7E-44 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_1963 e1e4bb642a4d885758c8b1a35daaa448 352 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 32 343 2.0E-94 T 13-10-2018 IPR014255 Spore coat protein CotS CLM_2155 0c43fa0f0e555677808a351a8587da13 146 SUPERFAMILY SSF50800 1 144 9.94E-39 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily CLM_2155 0c43fa0f0e555677808a351a8587da13 146 Gene3D G3DSA:2.40.33.20 1 145 5.4E-33 T 13-10-2018 CLM_0472 d97951c26e0fbee8a5a05458f0e8c3ee 149 SUPERFAMILY SSF53098 1 145 6.7E-53 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_0472 d97951c26e0fbee8a5a05458f0e8c3ee 149 Pfam PF00075 RNase H 2 144 1.3E-44 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 CLM_0472 d97951c26e0fbee8a5a05458f0e8c3ee 149 Gene3D G3DSA:3.30.420.10 1 148 1.3E-54 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_0472 d97951c26e0fbee8a5a05458f0e8c3ee 149 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 25.255 T 13-10-2018 IPR022892 Ribonuclease HI GO:0004523 CLM_1855 e96f6f8e5c0592d2bbebcd7a6c62dae2 408 SUPERFAMILY SSF103473 4 397 2.88E-59 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1855 e96f6f8e5c0592d2bbebcd7a6c62dae2 408 Pfam PF07690 Major Facilitator Superfamily 12 292 2.8E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_1855 e96f6f8e5c0592d2bbebcd7a6c62dae2 408 Gene3D G3DSA:1.20.1250.20 2 399 2.7E-54 T 13-10-2018 CLM_0757 4d8527ef5bbed4ae835da838b4f2c469 105 Pfam PF09664 Protein of unknown function C-terminus (DUF2399) 1 99 1.4E-14 T 13-10-2018 IPR024465 Domain of unknown function DUF2399 CLM_0295 5535407faf74693663ddf43dff42e13f 233 SUPERFAMILY SSF52172 4 181 4.66E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0295 5535407faf74693663ddf43dff42e13f 233 Pfam PF00072 Response regulator receiver domain 7 116 4.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0295 5535407faf74693663ddf43dff42e13f 233 Gene3D G3DSA:3.40.50.2300 1 131 2.8E-34 T 13-10-2018 CLM_0295 5535407faf74693663ddf43dff42e13f 233 SMART SM00448 5 115 1.3E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0295 5535407faf74693663ddf43dff42e13f 233 SMART SM00862 153 231 7.4E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0295 5535407faf74693663ddf43dff42e13f 233 Gene3D G3DSA:1.10.10.10 132 233 3.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0295 5535407faf74693663ddf43dff42e13f 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 231 1.9E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_3112 e57b65bd639a2d0ab399d289debd2752 119 Pfam PF00072 Response regulator receiver domain 4 115 4.3E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3112 e57b65bd639a2d0ab399d289debd2752 119 SUPERFAMILY SSF52172 1 118 1.85E-41 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3112 e57b65bd639a2d0ab399d289debd2752 119 Gene3D G3DSA:3.40.50.2300 1 119 6.0E-41 T 13-10-2018 CLM_3112 e57b65bd639a2d0ab399d289debd2752 119 SMART SM00448 2 114 2.1E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2393 4ddae6bd275d9b05ce128495fb2345b0 257 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 252 2.5E-63 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_2393 4ddae6bd275d9b05ce128495fb2345b0 257 SUPERFAMILY SSF53067 2 252 8.05E-42 T 13-10-2018 CLM_2393 4ddae6bd275d9b05ce128495fb2345b0 257 Gene3D G3DSA:3.30.420.40 95 237 2.0E-88 T 13-10-2018 CLM_2393 4ddae6bd275d9b05ce128495fb2345b0 257 Gene3D G3DSA:3.30.420.40 4 252 2.0E-88 T 13-10-2018 CLM_2393 4ddae6bd275d9b05ce128495fb2345b0 257 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 2 250 4.5E-84 T 13-10-2018 IPR008275 CoA enzyme activase CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 1.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 Gene3D G3DSA:3.40.640.10 98 460 8.3E-119 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 SUPERFAMILY SSF53383 70 466 1.97E-83 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 Pfam PF00155 Aminotransferase class I and II 140 433 1.5E-21 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 SUPERFAMILY SSF46785 4 83 1.29E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 Gene3D G3DSA:1.10.10.10 2 85 1.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0747 a1d6845999184b8b3c1f132a4a7185a3 469 SMART SM00345 16 75 1.0E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2694 8d6c05cc47d7b4a1a8e5de4bfac986c1 288 Gene3D G3DSA:1.10.357.140 15 164 1.7E-13 T 13-10-2018 CLM_2694 8d6c05cc47d7b4a1a8e5de4bfac986c1 288 Pfam PF01040 UbiA prenyltransferase family 32 253 2.8E-23 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 Gene3D G3DSA:2.30.40.10 4 390 4.6E-151 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 3 390 2.3E-170 T 13-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 SUPERFAMILY SSF51556 57 347 1.01E-70 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 PIRSF PIRSF001238 1 391 2.0E-170 T 13-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 SUPERFAMILY SSF51338 1 389 2.83E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 Gene3D G3DSA:3.20.20.140 58 343 4.6E-151 T 13-10-2018 CLM_3902 2a98ddfbeeab198f7e48934733185be1 391 Pfam PF01979 Amidohydrolase family 53 375 4.1E-16 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 PRINTS PR00123 ATP synthase A subunit signature 207 222 1.2E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 PRINTS PR00123 ATP synthase A subunit signature 139 154 1.2E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 PRINTS PR00123 ATP synthase A subunit signature 80 96 1.2E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 PRINTS PR00123 ATP synthase A subunit signature 155 177 1.2E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 Pfam PF00119 ATP synthase A chain 24 219 5.2E-47 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 ProSitePatterns PS00449 ATP synthase a subunit signature. 158 167 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 25 219 1.1E-30 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 226 12.275 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 SUPERFAMILY SSF81336 72 219 1.83E-28 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0194 44c1cb9c1479b501948d440d987c5634 226 Gene3D G3DSA:1.20.120.220 72 226 1.4E-30 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Gene3D G3DSA:3.40.50.300 690 852 2.3E-20 T 13-10-2018 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Pfam PF00929 Exonuclease 496 652 2.7E-25 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Gene3D G3DSA:3.40.50.300 192 317 3.8E-27 T 13-10-2018 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Gene3D G3DSA:3.40.50.300 349 452 9.8E-20 T 13-10-2018 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 488 664 3.3E-26 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Pfam PF13361 UvrD-like helicase C-terminal domain 295 831 1.0E-101 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 SMART SM00479 494 662 3.5E-27 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 SUPERFAMILY SSF53098 494 719 5.61E-46 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Gene3D G3DSA:3.40.50.300 3 171 1.1E-35 T 13-10-2018 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 SUPERFAMILY SSF52540 5 850 2.3E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 288 2.9E-48 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CLM_1495 29c8c80a87342252e94219c1c8b8731e 855 Gene3D G3DSA:3.30.420.10 485 663 3.7E-39 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_1730 5142da111eb475d755191dbc40bf192c 309 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 4 177 1.1E-43 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CLM_1730 5142da111eb475d755191dbc40bf192c 309 SUPERFAMILY SSF90002 217 301 7.98E-6 T 13-10-2018 CLM_1730 5142da111eb475d755191dbc40bf192c 309 Gene3D G3DSA:3.40.50.300 1 194 4.0E-52 T 13-10-2018 CLM_1730 5142da111eb475d755191dbc40bf192c 309 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 218 301 4.7E-5 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CLM_1730 5142da111eb475d755191dbc40bf192c 309 SUPERFAMILY SSF52540 3 192 2.67E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 Gene3D G3DSA:2.40.240.10 3 90 3.6E-22 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 Gene3D G3DSA:2.170.120.20 94 177 2.2E-18 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 97 175 4.6E-19 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 SUPERFAMILY SSF50715 3 176 1.5E-42 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 13 90 1.0E-19 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 Pfam PF01386 Ribosomal L25p family 7 87 1.1E-19 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 2 177 21.639 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_3522 2e3354d1433d0ca6e906dbb8ade4013e 178 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 13 175 7.4E-39 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 Pfam PF01546 Peptidase family M20/M25/M40 140 402 2.3E-10 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 Gene3D G3DSA:3.30.70.360 210 320 8.8E-182 T 13-10-2018 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 139 178 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 Pfam PF07687 Peptidase dimerisation domain 208 307 2.0E-10 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 SUPERFAMILY SSF55031 210 321 1.15E-39 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 Hamap MF_00550 Peptidase T [pepT]. 1 405 59.362 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 PIRSF PIRSF037215 1 408 5.6E-190 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 407 5.7E-181 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 SUPERFAMILY SSF53187 1 407 7.29E-80 T 13-10-2018 CLM_0520 5280ebe725cd929eb29d33d61a6cb0c7 408 Gene3D G3DSA:3.40.630.10 4 401 8.8E-182 T 13-10-2018 CLM_2398 8096634960978d4d369e7f5ddcc37a39 375 Gene3D G3DSA:3.40.50.11890 31 156 3.5E-82 T 13-10-2018 CLM_2398 8096634960978d4d369e7f5ddcc37a39 375 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 39 375 3.4E-62 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2398 8096634960978d4d369e7f5ddcc37a39 375 Gene3D G3DSA:3.40.50.11900 233 375 6.1E-51 T 13-10-2018 CLM_2398 8096634960978d4d369e7f5ddcc37a39 375 Gene3D G3DSA:1.20.1270.370 14 220 3.5E-82 T 13-10-2018 CLM_0042 ee7168d0eae79067ce3a19d4d473f8d4 230 Gene3D G3DSA:2.40.50.580 1 78 6.7E-22 T 13-10-2018 CLM_0042 ee7168d0eae79067ce3a19d4d473f8d4 230 Gene3D G3DSA:3.40.1350.60 79 230 3.9E-50 T 13-10-2018 CLM_0042 ee7168d0eae79067ce3a19d4d473f8d4 230 Pfam PF03749 Sugar fermentation stimulation protein 13 221 2.5E-76 T 13-10-2018 IPR005224 Sugar fermentation stimulation protein CLM_0042 ee7168d0eae79067ce3a19d4d473f8d4 230 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 4 220 5.9E-64 T 13-10-2018 IPR005224 Sugar fermentation stimulation protein CLM_0042 ee7168d0eae79067ce3a19d4d473f8d4 230 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 230 51.547 T 13-10-2018 IPR005224 Sugar fermentation stimulation protein CLM_1619 3910c36cc30562f5277ec44bd5957980 233 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 11 103 2.8E-13 T 13-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family CLM_1619 3910c36cc30562f5277ec44bd5957980 233 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 15 103 4.7E-22 T 13-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family CLM_1619 3910c36cc30562f5277ec44bd5957980 233 Pfam PF10552 ORF6C domain 110 221 7.1E-36 T 13-10-2018 IPR018878 ORF6C domain CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 Gene3D G3DSA:2.40.50.970 1 73 2.9E-21 T 13-10-2018 IPR037254 HupF/HypC superfamily CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 Pfam PF01455 HupF/HypC family 1 56 3.7E-21 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 13-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 SUPERFAMILY SSF159127 1 69 1.57E-19 T 13-10-2018 IPR037254 HupF/HypC superfamily CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.6E-11 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 2.6E-11 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 38 54 2.6E-11 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CLM_1992 c5c3f4081bb71bd597a6e8f9eedcfa33 75 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 56 5.4E-19 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 Gene3D G3DSA:3.40.50.200 90 397 1.0E-54 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 SUPERFAMILY SSF52743 51 397 1.57E-53 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 PRINTS PR00723 Subtilisin serine protease family (S8) signature 148 161 3.9E-12 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 PRINTS PR00723 Subtilisin serine protease family (S8) signature 340 356 3.9E-12 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 PRINTS PR00723 Subtilisin serine protease family (S8) signature 108 127 3.9E-12 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 Pfam PF00082 Subtilase family 108 362 6.3E-21 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 152 162 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site CLM_4083 1d82f29849b6128ec4aaf8c34166ea96 398 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 113 123 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site CLM_2754 66cdbb27c0730c3b96b672846b3f38dc 332 PIRSF PIRSF000428 1 332 6.7E-116 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_2754 66cdbb27c0730c3b96b672846b3f38dc 332 Gene3D G3DSA:3.40.50.10950 9 329 3.8E-142 T 13-10-2018 CLM_2754 66cdbb27c0730c3b96b672846b3f38dc 332 Gene3D G3DSA:3.40.50.10750 142 302 3.8E-142 T 13-10-2018 CLM_2754 66cdbb27c0730c3b96b672846b3f38dc 332 SUPERFAMILY SSF53659 1 329 1.69E-104 T 13-10-2018 CLM_2754 66cdbb27c0730c3b96b672846b3f38dc 332 Pfam PF01515 Phosphate acetyl/butaryl transferase 3 326 8.8E-137 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_2754 66cdbb27c0730c3b96b672846b3f38dc 332 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 18 326 2.5E-125 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 3 321 36.594 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 179 316 5.5E-54 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 Gene3D G3DSA:3.40.50.720 1 186 3.8E-64 T 13-10-2018 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 SUPERFAMILY SSF48179 178 330 4.76E-56 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 5 158 9.7E-54 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 SUPERFAMILY SSF51735 5 177 2.2E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PIRSF PIRSF000114 1 331 1.0E-108 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 132 152 3.4E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 7 24 3.4E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 237 254 3.4E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 172 196 3.4E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 57 84 3.4E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 197 221 3.4E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 Gene3D G3DSA:1.10.1040.10 188 332 3.9E-53 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CLM_2823 c4acdbdd1acd1322d6e76460677c0b14 332 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 187 208 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CLM_3489 9dae24741780b1867e28878966895e4b 118 TIGRFAM TIGR02839 spore_V_AE: stage V sporulation protein AE 3 116 7.6E-48 T 13-10-2018 IPR014204 Sporulation stage V, protein AE CLM_3489 9dae24741780b1867e28878966895e4b 118 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 2 111 4.0E-33 T 13-10-2018 IPR005562 SpoVA CLM_4043 f92765e13f10c3e245ded50be62600b9 449 Gene3D G3DSA:3.30.70.20 78 143 1.6E-10 T 13-10-2018 CLM_4043 f92765e13f10c3e245ded50be62600b9 449 SUPERFAMILY SSF54862 94 139 5.35E-14 T 13-10-2018 CLM_4043 f92765e13f10c3e245ded50be62600b9 449 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 120 131 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_4043 f92765e13f10c3e245ded50be62600b9 449 Pfam PF00037 4Fe-4S binding domain 114 135 8.3E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_4043 f92765e13f10c3e245ded50be62600b9 449 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 154 390 1.5E-60 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal CLM_4043 f92765e13f10c3e245ded50be62600b9 449 SUPERFAMILY SSF53920 119 427 8.5E-75 T 13-10-2018 IPR009016 Iron hydrogenase CLM_4043 f92765e13f10c3e245ded50be62600b9 449 Gene3D G3DSA:3.40.950.20 191 433 1.7E-38 T 13-10-2018 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 PRINTS PR00415 Aconitase family signature 110 123 2.6E-23 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 PRINTS PR00415 Aconitase family signature 186 199 2.6E-23 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 PRINTS PR00415 Aconitase family signature 349 362 2.6E-23 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 PRINTS PR00415 Aconitase family signature 90 98 2.6E-23 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 PRINTS PR00415 Aconitase family signature 200 213 2.6E-23 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 PRINTS PR00415 Aconitase family signature 124 139 2.6E-23 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 ProSitePatterns PS01244 Aconitase family signature 2. 349 362 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 SUPERFAMILY SSF52016 439 638 1.94E-55 T 13-10-2018 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 Pfam PF00694 Aconitase C-terminal domain 514 575 5.9E-25 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 Pfam PF00330 Aconitase family (aconitate hydratase) 7 407 2.1E-110 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 TIGRFAM TIGR01342 acon_putative: putative aconitate hydratase 4 638 1.3E-280 T 13-10-2018 IPR006250 Aconitase, putative CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 Gene3D G3DSA:3.20.19.10 461 641 1.2E-47 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 Gene3D G3DSA:3.30.499.10 270 434 6.9E-52 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 SUPERFAMILY SSF53732 2 417 1.26E-151 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 Gene3D G3DSA:3.30.499.20 4 267 1.8E-89 T 13-10-2018 CLM_0497 3fe1fcd17307452bbb78a4af549de531 641 ProSitePatterns PS00450 Aconitase family signature 1. 289 305 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CLM_2440 ab47ae4be460b49f3437896253a40d9c 380 Pfam PF02595 Glycerate kinase family 3 374 1.2E-146 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CLM_2440 ab47ae4be460b49f3437896253a40d9c 380 Gene3D G3DSA:3.40.50.10350 1 363 1.3E-138 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold CLM_2440 ab47ae4be460b49f3437896253a40d9c 380 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 6.2E-157 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CLM_2440 ab47ae4be460b49f3437896253a40d9c 380 PIRSF PIRSF006078 1 378 5.7E-137 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CLM_2440 ab47ae4be460b49f3437896253a40d9c 380 Gene3D G3DSA:3.90.1510.10 42 277 1.3E-138 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 CLM_2440 ab47ae4be460b49f3437896253a40d9c 380 SUPERFAMILY SSF110738 1 376 4.45E-138 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 CLM_3557 57233b5a61e504694e2cbc9c94fe3b0b 246 Pfam PF13649 Methyltransferase domain 43 137 4.1E-16 T 13-10-2018 CLM_3557 57233b5a61e504694e2cbc9c94fe3b0b 246 Gene3D G3DSA:2.20.25.110 145 205 1.2E-75 T 13-10-2018 CLM_3557 57233b5a61e504694e2cbc9c94fe3b0b 246 SUPERFAMILY SSF53335 2 246 4.78E-50 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3557 57233b5a61e504694e2cbc9c94fe3b0b 246 Gene3D G3DSA:3.40.50.150 4 226 1.2E-75 T 13-10-2018 CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 SUPERFAMILY SSF46785 168 257 4.92E-41 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 SUPERFAMILY SSF55781 11 155 5.4E-5 T 13-10-2018 CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 Gene3D G3DSA:1.10.10.10 161 258 1.9E-45 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 Gene3D G3DSA:3.30.450.40 1 160 4.2E-59 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 PIRSF PIRSF011572 1 258 4.4E-122 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 258 141.112 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 Pfam PF06018 CodY GAF-like domain 3 179 2.2E-70 T 13-10-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 TIGRFAM TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY 4 254 8.0E-114 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 CLM_2729 a4cf4e9da360bee04cdc9708d1e1bebb 258 Pfam PF08222 CodY helix-turn-helix domain 198 258 2.9E-34 T 13-10-2018 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal CLM_1581 45a949942de893be85dca2ae505e4511 424 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 257 2.5E-48 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CLM_1581 45a949942de893be85dca2ae505e4511 424 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 3.1E-8 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_1581 45a949942de893be85dca2ae505e4511 424 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 3.1E-8 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_1581 45a949942de893be85dca2ae505e4511 424 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 3.1E-8 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_1581 45a949942de893be85dca2ae505e4511 424 Gene3D G3DSA:3.40.710.10 16 303 2.0E-80 T 13-10-2018 CLM_1581 45a949942de893be85dca2ae505e4511 424 SUPERFAMILY SSF56601 8 279 5.63E-58 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 SUPERFAMILY SSF50621 239 384 1.85E-48 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 Pfam PF01168 Alanine racemase, N-terminal domain 12 232 1.7E-63 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 Gene3D G3DSA:2.40.37.10 9 375 3.9E-128 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 Gene3D G3DSA:3.20.20.10 14 228 3.9E-128 T 13-10-2018 IPR029066 PLP-binding barrel CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 205 232 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 300 317 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 30 46 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 66 84 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 162 173 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 358 371 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 262 277 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 127 139 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 PRINTS PR00992 Alanine racemase signature 279 294 7.8E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 SUPERFAMILY SSF51419 12 247 6.4E-64 T 13-10-2018 IPR029066 PLP-binding barrel CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 TIGRFAM TIGR00492 alr: alanine racemase 6 376 1.2E-112 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 Pfam PF00842 Alanine racemase, C-terminal domain 246 375 8.1E-44 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 SMART SM01005 246 376 1.4E-64 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 Hamap MF_01201 Alanine racemase. 5 376 32.918 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_1900 bdb211bac87646db6b526b224b1b8c97 389 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 35 45 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_3302 9edc8059da14da6de298d7dbbf80ddcb 202 Gene3D G3DSA:3.90.1720.10 26 201 7.3E-39 T 13-10-2018 CLM_3302 9edc8059da14da6de298d7dbbf80ddcb 202 Pfam PF05257 CHAP domain 72 166 1.8E-15 T 13-10-2018 IPR007921 CHAP domain CLM_3302 9edc8059da14da6de298d7dbbf80ddcb 202 SUPERFAMILY SSF54001 41 197 5.59E-35 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_1658 b62aa09b58ba9e9e5800d4efee8f807d 253 SUPERFAMILY SSF52096 21 197 5.87E-32 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_1658 b62aa09b58ba9e9e5800d4efee8f807d 253 PRINTS PR00127 Clp protease catalytic subunit P signature 70 90 1.1E-6 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_1658 b62aa09b58ba9e9e5800d4efee8f807d 253 PRINTS PR00127 Clp protease catalytic subunit P signature 120 139 1.1E-6 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_1658 b62aa09b58ba9e9e5800d4efee8f807d 253 Gene3D G3DSA:3.90.226.10 13 204 3.0E-35 T 13-10-2018 CLM_1658 b62aa09b58ba9e9e5800d4efee8f807d 253 Pfam PF00574 Clp protease 61 197 1.4E-21 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_2372 5c5a599a3c12c5a6e5ae22d1f8a115d3 468 SUPERFAMILY SSF103473 8 455 8.11E-39 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_2372 5c5a599a3c12c5a6e5ae22d1f8a115d3 468 Gene3D G3DSA:1.20.1250.20 1 467 6.3E-98 T 13-10-2018 CLM_2372 5c5a599a3c12c5a6e5ae22d1f8a115d3 468 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 243 461 1.5E-45 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CLM_2372 5c5a599a3c12c5a6e5ae22d1f8a115d3 468 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 147 159 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CLM_2372 5c5a599a3c12c5a6e5ae22d1f8a115d3 468 Pfam PF00854 POT family 231 429 1.6E-31 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_2372 5c5a599a3c12c5a6e5ae22d1f8a115d3 468 Pfam PF00854 POT family 86 212 3.6E-14 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_3448 dfbb5318065593502d1abf17d141eb74 136 Gene3D G3DSA:1.10.260.40 2 83 5.8E-23 T 13-10-2018 CLM_3448 dfbb5318065593502d1abf17d141eb74 136 Pfam PF01381 Helix-turn-helix 12 62 1.1E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3448 dfbb5318065593502d1abf17d141eb74 136 SMART SM00530 7 62 1.4E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3448 dfbb5318065593502d1abf17d141eb74 136 SUPERFAMILY SSF47413 3 70 3.38E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 Gene3D G3DSA:1.10.10.60 57 115 1.6E-15 T 13-10-2018 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 SMART SM00342 20 103 2.4E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 Pfam PF12833 Helix-turn-helix domain 27 104 2.0E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 SUPERFAMILY SSF46689 5 53 5.73E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 SUPERFAMILY SSF46689 56 109 8.51E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 57 99 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 1.3E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 1.3E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_4068 65f847b5c81c72c62a3ee0d4183696d1 129 Gene3D G3DSA:1.10.10.60 2 56 5.1E-14 T 13-10-2018 CLM_1002 37e7fe18c60673cb5e06ddb430cfa281 480 Gene3D G3DSA:3.40.50.1820 99 480 8.9E-141 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_1002 37e7fe18c60673cb5e06ddb430cfa281 480 SUPERFAMILY SSF53474 102 469 1.51E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 SUPERFAMILY SSF54719 82 196 1.44E-42 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 PIRSF PIRSF000349 1 198 2.1E-79 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 SUPERFAMILY SSF46609 1 86 5.76E-31 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 Gene3D G3DSA:1.10.287.990 20 83 3.8E-26 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 159 166 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 Gene3D G3DSA:2.40.500.20 84 198 1.8E-43 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.1E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 PRINTS PR01703 Manganese superoxide dismutase signature 66 79 3.1E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 PRINTS PR01703 Manganese superoxide dismutase signature 119 127 3.1E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 PRINTS PR01703 Manganese superoxide dismutase signature 157 169 3.1E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.1E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 1.4E-27 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_2584 c282a063c863b3ec5c82d967bf2db47e 198 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 90 192 3.0E-36 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CLM_1360 79d75b4918655529ce8bd556ea82537d 290 Pfam PF00005 ABC transporter 19 156 8.6E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1360 79d75b4918655529ce8bd556ea82537d 290 SMART SM00382 28 206 3.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1360 79d75b4918655529ce8bd556ea82537d 290 SUPERFAMILY SSF52540 4 218 3.06E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1360 79d75b4918655529ce8bd556ea82537d 290 Gene3D G3DSA:3.40.50.300 1 234 5.6E-44 T 13-10-2018 CLM_0460 e808954273cf76af88e3015076244e6d 193 TIGRFAM TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family 11 192 7.9E-49 T 13-10-2018 IPR014247 Sporulation lipoprotein YhcN/YlaJ GO:0030435 CLM_0460 e808954273cf76af88e3015076244e6d 193 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 19 190 2.8E-31 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like CLM_2589 3ce530a41f66ef86584f602ff21df4f5 244 Pfam PF12730 ABC-2 family transporter protein 5 172 1.9E-8 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_1536 6b96988f338f9fb42600bce884d1f083 262 SUPERFAMILY SSF81345 2 256 3.14E-30 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1536 6b96988f338f9fb42600bce884d1f083 262 Gene3D G3DSA:1.10.3470.10 35 262 7.7E-8 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1536 6b96988f338f9fb42600bce884d1f083 262 Pfam PF00950 ABC 3 transport family 3 258 1.8E-61 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CLM_2182 c39a5bd7fd828def7b5b0a351234dffc 429 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 3 425 33.893 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CLM_2182 c39a5bd7fd828def7b5b0a351234dffc 429 PIRSF PIRSF006054 1 427 1.8E-130 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CLM_2182 c39a5bd7fd828def7b5b0a351234dffc 429 Pfam PF03313 Serine dehydratase alpha chain 120 420 1.8E-48 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 SMART SM00862 149 225 5.3E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 Gene3D G3DSA:1.10.10.10 128 228 8.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 Pfam PF00072 Response regulator receiver domain 4 113 2.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 SUPERFAMILY SSF52172 3 176 8.94E-40 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 224 3.2E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 SMART SM00448 2 113 4.2E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0420 a16c46c1c6b205e2df66183b23a0f0d1 228 Gene3D G3DSA:3.40.50.2300 2 127 3.1E-37 T 13-10-2018 CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 SUPERFAMILY SSF49899 89 242 3.32E-17 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 Gene3D G3DSA:2.60.120.200 88 244 8.1E-18 T 13-10-2018 CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 SUPERFAMILY SSF49373 247 326 6.67E-21 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 Gene3D G3DSA:2.60.40.1080 245 328 1.3E-26 T 13-10-2018 CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 Pfam PF02368 Bacterial Ig-like domain (group 2) 248 323 3.8E-16 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 SMART SM00635 246 323 7.9E-17 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 CLM_2533 0a323bbaf994ff58c991a8edfd7d5c92 411 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 91 240 1.1E-11 T 13-10-2018 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 PIRSF PIRSF000497 1 391 1.1E-176 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 SUPERFAMILY SSF55973 241 389 3.57E-69 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Gene3D G3DSA:3.30.300.10 10 278 8.2E-179 T 13-10-2018 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 267 275 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 SUPERFAMILY SSF55973 3 108 6.67E-48 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 391 58.269 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 4 390 6.2E-186 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 124 134 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Pfam PF02772 S-adenosylmethionine synthetase, central domain 123 239 1.8E-50 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Gene3D G3DSA:3.30.300.10 101 383 8.2E-179 T 13-10-2018 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Gene3D G3DSA:3.30.300.10 4 241 8.2E-179 T 13-10-2018 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 SUPERFAMILY SSF55973 119 240 2.51E-53 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 241 380 1.4E-70 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_0216 99aba894994d4ad4f0840ea6d50891ef 391 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 99 2.4E-44 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CLM_2625 e1355156ef2ae64116c8b8ab5dbf54a7 180 SUPERFAMILY SSF46934 5 46 1.53E-5 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 CLM_2625 e1355156ef2ae64116c8b8ab5dbf54a7 180 Pfam PF14242 Domain of unknown function (DUF4342) 85 139 4.5E-6 T 13-10-2018 IPR025642 Domain of unknown function DUF4342 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 3.5E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 3.5E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 109 129 3.5E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 138 155 3.5E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 3.5E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 3.5E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 SUPERFAMILY SSF51735 3 162 3.66E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 Pfam PF02056 Family 4 glycosyl hydrolase 6 180 2.2E-48 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 138 170 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 Gene3D G3DSA:3.40.50.720 1 166 4.7E-56 T 13-10-2018 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 415 1.1E-45 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 Gene3D G3DSA:3.90.110.10 168 441 4.9E-84 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_0326 16c3318e91e64e051f58bdd2c077e2a1 441 SUPERFAMILY SSF56327 169 441 7.56E-70 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_0137 246d8c85354ff2ea9c8362307678f3d1 713 Gene3D G3DSA:3.20.70.20 120 686 2.1E-185 T 13-10-2018 CLM_0137 246d8c85354ff2ea9c8362307678f3d1 713 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 114 701 4.6E-183 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 CLM_0137 246d8c85354ff2ea9c8362307678f3d1 713 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 114 702 2.2E-197 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 CLM_0137 246d8c85354ff2ea9c8362307678f3d1 713 SUPERFAMILY SSF51998 115 685 1.59E-158 T 13-10-2018 CLM_0137 246d8c85354ff2ea9c8362307678f3d1 713 Pfam PF03477 ATP cone domain 3 91 2.4E-17 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CLM_0513 6ae7e09632ebf8beb633e543841a2a35 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 2 110 2.1E-25 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_0513 6ae7e09632ebf8beb633e543841a2a35 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 18.593 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_0513 6ae7e09632ebf8beb633e543841a2a35 113 Gene3D G3DSA:3.30.2320.50 2 109 5.4E-25 T 13-10-2018 CLM_0513 6ae7e09632ebf8beb633e543841a2a35 113 PIRSF PIRSF004761 1 113 5.6E-25 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_0513 6ae7e09632ebf8beb633e543841a2a35 113 Gene3D G3DSA:2.20.28.10 69 102 5.4E-25 T 13-10-2018 CLM_2573 1aa894fbc4a90dc2523118973b833f53 262 Pfam PF08346 AntA/AntB antirepressor 25 94 5.3E-27 T 13-10-2018 IPR013557 AntA/AntB antirepressor CLM_2573 1aa894fbc4a90dc2523118973b833f53 262 Pfam PF03374 Phage antirepressor protein KilAC domain 141 250 1.1E-33 T 13-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 CLM_3217 6afbbb4dc0c6f4b0ef565faa2c6946fe 124 Pfam PF06115 Domain of unknown function (DUF956) 1 116 5.0E-56 T 13-10-2018 IPR010360 Protein of unknown function DUF956 CLM_3217 6afbbb4dc0c6f4b0ef565faa2c6946fe 124 PIRSF PIRSF021265 1 123 5.9E-56 T 13-10-2018 IPR010360 Protein of unknown function DUF956 CLM_0788 da1ac6b490c0a9c5a6bcbc26e868eb80 187 SUPERFAMILY SSF88659 109 177 8.63E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_0788 da1ac6b490c0a9c5a6bcbc26e868eb80 187 Gene3D G3DSA:1.10.1740.10 4 89 1.8E-13 T 13-10-2018 CLM_0788 da1ac6b490c0a9c5a6bcbc26e868eb80 187 Gene3D G3DSA:1.10.10.10 107 179 8.5E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0788 da1ac6b490c0a9c5a6bcbc26e868eb80 187 Pfam PF04542 Sigma-70 region 2 24 92 4.5E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0788 da1ac6b490c0a9c5a6bcbc26e868eb80 187 SUPERFAMILY SSF88946 4 104 1.45E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0788 da1ac6b490c0a9c5a6bcbc26e868eb80 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 177 5.6E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_1144 afa082e83eedd1f39716d576a40f9164 322 Pfam PF08239 Bacterial SH3 domain 275 320 1.9E-6 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_1144 afa082e83eedd1f39716d576a40f9164 322 Gene3D G3DSA:2.30.30.40 264 322 2.9E-6 T 13-10-2018 CLM_1144 afa082e83eedd1f39716d576a40f9164 322 SUPERFAMILY SSF54001 27 141 1.73E-45 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_1144 afa082e83eedd1f39716d576a40f9164 322 Pfam PF00877 NlpC/P60 family 43 138 2.4E-28 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CLM_1144 afa082e83eedd1f39716d576a40f9164 322 Gene3D G3DSA:3.90.1720.10 17 142 2.6E-51 T 13-10-2018 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 SUPERFAMILY SSF46604 88 132 6.02E-8 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 131 1.5E-13 T 13-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 83 5.5E-19 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 130 17.638 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 SUPERFAMILY SSF51344 4 84 4.58E-19 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 82 2.0E-9 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 130 3.6E-26 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 Gene3D G3DSA:1.20.5.440 91 133 1.3E-13 T 13-10-2018 CLM_0201 e6b3118611c293df1ceda139dd8bc941 133 Gene3D G3DSA:2.60.15.10 1 83 3.2E-20 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_2728 29872e892937da577182c1eb487285ab 233 SUPERFAMILY SSF52313 6 229 5.62E-93 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CLM_2728 29872e892937da577182c1eb487285ab 233 Pfam PF00318 Ribosomal protein S2 9 225 1.2E-97 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 Gene3D G3DSA:1.10.287.610 101 151 2.5E-24 T 13-10-2018 CLM_2728 29872e892937da577182c1eb487285ab 233 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 227 4.6E-106 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2728 29872e892937da577182c1eb487285ab 233 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 226 42.338 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2728 29872e892937da577182c1eb487285ab 233 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 PRINTS PR00395 Ribosomal protein S2 signature 197 211 9.3E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 PRINTS PR00395 Ribosomal protein S2 signature 87 104 9.3E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 PRINTS PR00395 Ribosomal protein S2 signature 159 176 9.3E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 PRINTS PR00395 Ribosomal protein S2 signature 37 46 9.3E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 PRINTS PR00395 Ribosomal protein S2 signature 6 24 9.3E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2728 29872e892937da577182c1eb487285ab 233 PRINTS PR00395 Ribosomal protein S2 signature 176 187 9.3E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_1489 99d41db9c1f81c9f18655e2736bbc059 142 Gene3D G3DSA:3.30.428.10 1 141 3.4E-37 T 13-10-2018 IPR036265 HIT-like superfamily CLM_1489 99d41db9c1f81c9f18655e2736bbc059 142 PRINTS PR00332 Histidine triad family signature 95 105 2.5E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_1489 99d41db9c1f81c9f18655e2736bbc059 142 PRINTS PR00332 Histidine triad family signature 9 25 2.5E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_1489 99d41db9c1f81c9f18655e2736bbc059 142 PRINTS PR00332 Histidine triad family signature 30 48 2.5E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_1489 99d41db9c1f81c9f18655e2736bbc059 142 Pfam PF01230 HIT domain 16 109 9.9E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_1489 99d41db9c1f81c9f18655e2736bbc059 142 SUPERFAMILY SSF54197 6 116 2.94E-34 T 13-10-2018 IPR036265 HIT-like superfamily CLM_2684 99fe1798925c1ec9c3a87cfd068fbef3 66 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 3 59 5.1E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2684 99fe1798925c1ec9c3a87cfd068fbef3 66 SMART SM00530 3 58 1.3E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2684 99fe1798925c1ec9c3a87cfd068fbef3 66 Gene3D G3DSA:1.10.260.40 1 63 1.9E-13 T 13-10-2018 CLM_2684 99fe1798925c1ec9c3a87cfd068fbef3 66 SUPERFAMILY SSF47413 2 63 6.4E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 Gene3D G3DSA:1.20.120.610 6 158 4.7E-50 T 13-10-2018 CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 Pfam PF00137 ATP synthase subunit C 97 156 1.1E-13 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 Pfam PF00137 ATP synthase subunit C 21 79 1.0E-13 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 SUPERFAMILY SSF81333 90 157 3.4E-12 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 SUPERFAMILY SSF81333 18 80 9.81E-10 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 135 158 1.4E-7 T 13-10-2018 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 60 84 1.4E-7 T 13-10-2018 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2993 e58adc81cdd8f55ffefbcf4471452a81 158 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 34 58 1.4E-7 T 13-10-2018 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2933 7bc4ca7c853d04ea40965e524f3c1918 416 Gene3D G3DSA:1.20.1270.210 40 310 6.9E-7 T 13-10-2018 CLM_2933 7bc4ca7c853d04ea40965e524f3c1918 416 Pfam PF04860 Phage portal protein 50 373 8.5E-96 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein CLM_2933 7bc4ca7c853d04ea40965e524f3c1918 416 Gene3D G3DSA:3.30.1120.70 205 258 6.9E-7 T 13-10-2018 CLM_2933 7bc4ca7c853d04ea40965e524f3c1918 416 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 39 376 2.4E-91 T 13-10-2018 IPR006427 Phage portal protein, HK97 CLM_2933 7bc4ca7c853d04ea40965e524f3c1918 416 Gene3D G3DSA:2.40.500.30 65 172 6.9E-7 T 13-10-2018 CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 Gene3D G3DSA:3.60.15.10 6 436 1.4E-146 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 Pfam PF00753 Metallo-beta-lactamase superfamily 11 72 1.6E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 Pfam PF10996 Beta-Casp domain 252 377 1.7E-29 T 13-10-2018 IPR022712 Beta-Casp domain CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 SMART SM00849 13 225 4.2E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 SUPERFAMILY SSF56281 1 464 1.26E-130 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 SMART SM01027 252 377 7.2E-61 T 13-10-2018 IPR022712 Beta-Casp domain CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 Gene3D G3DSA:3.40.50.10890 220 403 1.4E-146 T 13-10-2018 CLM_1254 43c7ab0442f946cb9b4fcc1577e343a1 502 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 391 453 1.7E-14 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLM_3773 51501246905c603804754fec2ea68fec 311 Pfam PF00005 ABC transporter 23 164 1.1E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3773 51501246905c603804754fec2ea68fec 311 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3773 51501246905c603804754fec2ea68fec 311 SUPERFAMILY SSF52540 4 223 4.05E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3773 51501246905c603804754fec2ea68fec 311 Gene3D G3DSA:3.40.50.300 1 238 1.9E-59 T 13-10-2018 CLM_3773 51501246905c603804754fec2ea68fec 311 SMART SM00382 32 213 1.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0828 6b3a055f1e092646502761b7ee096c84 600 Pfam PF02687 FtsX-like permease family 104 201 4.0E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0828 6b3a055f1e092646502761b7ee096c84 600 Pfam PF02687 FtsX-like permease family 500 591 4.2E-16 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0131 a6f7ce2ed7bcb03b00cc2fa6ff5768ed 280 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 29 274 1.2E-90 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLM_0131 a6f7ce2ed7bcb03b00cc2fa6ff5768ed 280 ProSitePatterns PS01215 Mrp family signature. 143 159 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 CLM_0131 a6f7ce2ed7bcb03b00cc2fa6ff5768ed 280 SUPERFAMILY SSF52540 25 257 9.96E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0131 a6f7ce2ed7bcb03b00cc2fa6ff5768ed 280 Gene3D G3DSA:3.40.50.300 21 279 1.0E-69 T 13-10-2018 CLM_0131 a6f7ce2ed7bcb03b00cc2fa6ff5768ed 280 Hamap MF_02040 Iron-sulfur cluster carrier protein. 22 273 33.613 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 Pfam PF04545 Sigma-70, region 4 176 229 8.9E-16 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 201 227 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 55 230 1.1E-33 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 82 95 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 Gene3D G3DSA:1.10.10.10 158 234 2.8E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 Pfam PF04542 Sigma-70 region 2 58 127 2.7E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 Gene3D G3DSA:1.20.120.1810 28 127 6.6E-24 T 13-10-2018 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 SUPERFAMILY SSF88659 139 233 3.74E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 SUPERFAMILY SSF88946 25 127 3.3E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 PRINTS PR00046 Major sigma-70 factor signature 201 216 1.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 PRINTS PR00046 Major sigma-70 factor signature 216 227 1.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 PRINTS PR00046 Major sigma-70 factor signature 82 95 1.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 PRINTS PR00046 Major sigma-70 factor signature 180 192 1.9E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 PIRSF PIRSF000770 8 235 2.4E-69 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CLM_2837 1392bfe7767e3ab5c90222754272e72d 235 TIGRFAM TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor 3 235 2.8E-127 T 13-10-2018 IPR014200 RNA polymerase sigma-E type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3176 491309f8447bf43d413938e31fedde17 266 Pfam PF05857 TraX protein 7 260 3.8E-39 T 13-10-2018 IPR008875 TraX CLM_2928 4b6a9c1ed5140d422d8f5408aacad6e3 119 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 8 114 4.1E-11 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 154 700 1.0E-167 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Gene3D G3DSA:3.30.365.10 139 364 8.5E-112 T 13-10-2018 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Gene3D G3DSA:3.30.365.10 376 754 1.5E-111 T 13-10-2018 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 SUPERFAMILY SSF56003 142 760 5.23E-182 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Gene3D G3DSA:3.30.365.10 20 289 8.5E-112 T 13-10-2018 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 SMART SM01008 22 138 1.5E-46 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 SUPERFAMILY SSF54665 3 161 1.09E-44 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Gene3D G3DSA:3.30.365.10 458 614 1.5E-111 T 13-10-2018 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Gene3D G3DSA:3.90.1170.50 37 138 8.5E-112 T 13-10-2018 CLM_1444 afb5b86520de5bfdf48f73362b048bc7 765 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 138 9.8E-30 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_2931 53e8e2ec5c3d10923631578459066d84 410 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 5 399 2.7E-65 T 13-10-2018 IPR024455 Phage capsid CLM_2931 53e8e2ec5c3d10923631578459066d84 410 Gene3D G3DSA:3.30.2400.10 181 380 1.1E-8 T 13-10-2018 CLM_2931 53e8e2ec5c3d10923631578459066d84 410 Gene3D G3DSA:3.30.2320.10 253 351 1.1E-8 T 13-10-2018 CLM_2931 53e8e2ec5c3d10923631578459066d84 410 SUPERFAMILY SSF56563 115 397 6.02E-37 T 13-10-2018 CLM_2931 53e8e2ec5c3d10923631578459066d84 410 Pfam PF05065 Phage capsid family 122 396 6.8E-30 T 13-10-2018 IPR024455 Phage capsid CLM_3577 7c4b2c0342965dc115edc872400b4086 168 SUPERFAMILY SSF55729 3 164 4.73E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3577 7c4b2c0342965dc115edc872400b4086 168 Pfam PF00583 Acetyltransferase (GNAT) family 44 140 6.1E-20 T 13-10-2018 IPR000182 GNAT domain CLM_3577 7c4b2c0342965dc115edc872400b4086 168 Gene3D G3DSA:3.40.630.30 3 165 5.3E-40 T 13-10-2018 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 Pfam PF00814 Glycoprotease family 27 312 1.8E-103 T 13-10-2018 IPR000905 Gcp-like domain CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 SUPERFAMILY SSF53067 105 317 7.78E-46 T 13-10-2018 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 7 318 4.6E-137 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 312 1.9E-111 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 Gene3D G3DSA:3.30.420.40 133 299 3.3E-127 T 13-10-2018 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 Gene3D G3DSA:3.30.420.40 7 319 3.3E-127 T 13-10-2018 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 337 63.374 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 SUPERFAMILY SSF53067 6 125 2.46E-31 T 13-10-2018 CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 135 147 5.5E-46 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 5.5E-46 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 269 278 5.5E-46 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 5.5E-46 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 5.5E-46 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_3747 9a7aa6d45fb38d261fbf091183beb116 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 179 5.5E-46 T 13-10-2018 IPR017861 Kae1/TsaD family CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 SUPERFAMILY SSF47729 1 90 8.1E-33 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 Pfam PF00216 Bacterial DNA-binding protein 1 90 4.0E-34 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 SMART SM00411 1 90 5.8E-44 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 Gene3D G3DSA:4.10.520.10 1 92 3.3E-36 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 3.8E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 3.8E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CLM_4026 75029c4c8d96fbb21156c42981cedb9a 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 3.8E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CLM_4146 d5ea21e374ec60750ab899a85e967f46 239 Pfam PF02527 rRNA small subunit methyltransferase G 23 202 1.3E-55 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CLM_4146 d5ea21e374ec60750ab899a85e967f46 239 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 27 218 1.4E-56 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CLM_4146 d5ea21e374ec60750ab899a85e967f46 239 PIRSF PIRSF003078 1 221 2.9E-58 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CLM_4146 d5ea21e374ec60750ab899a85e967f46 239 Gene3D G3DSA:3.40.50.150 2 239 1.2E-81 T 13-10-2018 CLM_4146 d5ea21e374ec60750ab899a85e967f46 239 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 15 215 28.419 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CLM_4146 d5ea21e374ec60750ab899a85e967f46 239 SUPERFAMILY SSF53335 5 239 3.79E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3865 a43dab20a5c136c2c8daf99375accf36 441 PRINTS PR00173 Glutamate-aspartate symporter signature 380 399 5.3E-5 T 13-10-2018 CLM_3865 a43dab20a5c136c2c8daf99375accf36 441 PRINTS PR00173 Glutamate-aspartate symporter signature 229 254 5.3E-5 T 13-10-2018 CLM_3865 a43dab20a5c136c2c8daf99375accf36 441 PRINTS PR00173 Glutamate-aspartate symporter signature 151 171 5.3E-5 T 13-10-2018 CLM_3865 a43dab20a5c136c2c8daf99375accf36 441 PRINTS PR00173 Glutamate-aspartate symporter signature 200 220 5.3E-5 T 13-10-2018 CLM_3865 a43dab20a5c136c2c8daf99375accf36 441 Pfam PF03553 Na+/H+ antiporter family 58 213 4.2E-16 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CLM_3865 a43dab20a5c136c2c8daf99375accf36 441 Pfam PF03553 Na+/H+ antiporter family 231 425 4.7E-13 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CLM_0998 24f5145c4f65e4b0c9fe50dabcc1bdce 174 Gene3D G3DSA:3.40.630.30 15 167 8.2E-16 T 13-10-2018 CLM_0998 24f5145c4f65e4b0c9fe50dabcc1bdce 174 SUPERFAMILY SSF55729 40 174 2.23E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0998 24f5145c4f65e4b0c9fe50dabcc1bdce 174 Pfam PF13673 Acetyltransferase (GNAT) domain 59 155 7.7E-12 T 13-10-2018 IPR000182 GNAT domain CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 Gene3D G3DSA:3.40.50.300 41 187 8.8E-16 T 13-10-2018 CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 1 431 38.4 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 SUPERFAMILY SSF52540 1 190 7.97E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 Gene3D G3DSA:3.40.50.880 234 439 3.9E-8 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 238 429 7.3E-35 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 SUPERFAMILY SSF52317 236 439 3.38E-25 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 185 7.7E-16 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_1072 0c90af3dd46601d619eedb207fe723ed 440 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 4 438 1.2E-126 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 CLM_2998 f99a957382b876d603918dc386c362b7 239 Gene3D G3DSA:1.10.575.10 24 234 2.5E-34 T 13-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 CLM_2998 f99a957382b876d603918dc386c362b7 239 SUPERFAMILY SSF48537 26 232 1.05E-43 T 13-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 CLM_2998 f99a957382b876d603918dc386c362b7 239 ProDom PD003946 PHOSPHOLIPASE C PLCB HYDROLASE PRECURSOR PHOSPHATIDYLCHOLINE SIGNAL CHOLINEPHOSPHOHYDROLASE TOXIN PLC 79 226 1.0E-4 T 13-10-2018 IPR001531 Zinc-dependent phospholipase C GO:0004629|GO:0008270 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 CLM_2998 f99a957382b876d603918dc386c362b7 239 SMART SM00770 1 238 1.7E-61 T 13-10-2018 IPR001531 Zinc-dependent phospholipase C GO:0004629|GO:0008270 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 CLM_2998 f99a957382b876d603918dc386c362b7 239 Pfam PF00882 Zinc dependent phospholipase C 40 184 1.7E-15 T 13-10-2018 IPR029002 Phospholipase C/D Reactome: R-HSA-163125 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 306 96.056 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 Gene3D G3DSA:3.30.465.10 92 218 7.4E-42 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 SUPERFAMILY SSF56194 199 303 7.85E-38 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 Gene3D G3DSA:3.90.78.10 219 306 2.5E-35 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 26 302 1.5E-78 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 SUPERFAMILY SSF56176 7 196 1.26E-48 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 203 301 3.4E-32 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 Pfam PF01565 FAD binding domain 39 165 4.6E-24 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CLM_3840 38b5cd2818638d9420e258a588f9a7c4 306 Gene3D G3DSA:3.30.43.10 1 91 1.4E-28 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CLM_3026 bcd7cbbd9af9c86d46350888205602c3 258 Pfam PF02108 Flagellar assembly protein FliH 124 249 1.6E-7 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 9 146 9.3E-43 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 Pfam PF01327 Polypeptide deformylase 4 145 3.7E-43 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 PRINTS PR01576 Peptide deformylase signature 34 63 1.4E-26 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 PRINTS PR01576 Peptide deformylase signature 99 117 1.4E-26 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 PRINTS PR01576 Peptide deformylase signature 118 147 1.4E-26 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 PRINTS PR01576 Peptide deformylase signature 87 98 1.4E-26 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 PIRSF PIRSF004749 1 148 2.3E-44 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 Hamap MF_00163 Peptide deformylase [def]. 2 149 25.521 T 13-10-2018 IPR023635 Peptide deformylase CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 Gene3D G3DSA:3.90.45.10 1 149 1.4E-48 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_2597 ce29a4d5dab827a1cec6499c96775173 150 SUPERFAMILY SSF56420 3 146 7.07E-49 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_3842 47df9baaf90e347739973bef4f304141 618 SUPERFAMILY SSF46600 190 243 1.24E-11 T 13-10-2018 IPR036876 UVR domain superfamily CLM_3842 47df9baaf90e347739973bef4f304141 618 Pfam PF12826 Helix-hairpin-helix motif 570 618 9.1E-10 T 13-10-2018 CLM_3842 47df9baaf90e347739973bef4f304141 618 Gene3D G3DSA:3.40.1440.10 2 100 2.0E-36 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3842 47df9baaf90e347739973bef4f304141 618 SUPERFAMILY SSF47781 530 618 5.72E-19 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3842 47df9baaf90e347739973bef4f304141 618 Pfam PF02151 UvrB/uvrC motif 214 238 7.5E-6 T 13-10-2018 IPR001943 UVR domain GO:0005515 CLM_3842 47df9baaf90e347739973bef4f304141 618 Pfam PF01541 GIY-YIG catalytic domain 15 91 2.2E-11 T 13-10-2018 IPR000305 GIY-YIG endonuclease CLM_3842 47df9baaf90e347739973bef4f304141 618 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 5 598 2.0E-178 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 CLM_3842 47df9baaf90e347739973bef4f304141 618 SMART SM00465 14 96 3.5E-27 T 13-10-2018 IPR000305 GIY-YIG endonuclease CLM_3842 47df9baaf90e347739973bef4f304141 618 Gene3D G3DSA:1.10.150.20 559 617 1.4E-18 T 13-10-2018 CLM_3842 47df9baaf90e347739973bef4f304141 618 Gene3D G3DSA:3.30.420.340 379 558 4.4E-55 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily CLM_3842 47df9baaf90e347739973bef4f304141 618 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 386 551 2.5E-53 T 13-10-2018 IPR001162 UvrC family homology region CLM_3842 47df9baaf90e347739973bef4f304141 618 SUPERFAMILY SSF82771 13 98 3.66E-25 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3842 47df9baaf90e347739973bef4f304141 618 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 616 28.232 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 CLM_0808 0975177a2a8e439b7e17746e9aeb8c82 425 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 32 413 1.3E-62 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 CLM_0808 0975177a2a8e439b7e17746e9aeb8c82 425 SUPERFAMILY SSF53807 15 413 1.86E-58 T 13-10-2018 CLM_0808 0975177a2a8e439b7e17746e9aeb8c82 425 Gene3D G3DSA:3.40.50.1980 22 165 5.3E-23 T 13-10-2018 CLM_0808 0975177a2a8e439b7e17746e9aeb8c82 425 Gene3D G3DSA:3.40.50.1980 166 273 2.1E-10 T 13-10-2018 CLM_3659 d4eb725b75251e15a6915fcecc3d459a 110 Pfam PF02635 DsrE/DsrF-like family 1 86 3.5E-7 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CLM_3659 d4eb725b75251e15a6915fcecc3d459a 110 SUPERFAMILY SSF75169 1 109 5.38E-17 T 13-10-2018 IPR027396 DsrEFH-like CLM_1491 9647968dbf293e1e5c11061e38720bed 252 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 7 88 1.5E-32 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal CLM_1491 9647968dbf293e1e5c11061e38720bed 252 Pfam PF01478 Type IV leader peptidase family 101 206 6.1E-11 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 Gene3D G3DSA:3.90.190.20 299 429 4.5E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 140 155 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 PIRSF PIRSF001563 1 429 6.0E-145 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 SUPERFAMILY SSF53623 1 296 2.04E-88 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 SUPERFAMILY SSF53244 299 428 5.19E-28 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 42 65 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 Pfam PF08245 Mur ligase middle domain 44 271 2.6E-19 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 Gene3D G3DSA:3.40.1190.10 1 296 6.3E-99 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 TIGRFAM TIGR01499 folC: bifunctional protein FolC 22 427 1.4E-117 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CLM_3575 3e62418e93e7e87ea09d1224f2ce0ede 429 Pfam PF02875 Mur ligase family, glutamate ligase domain 296 377 3.7E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 258 273 3.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 289 3.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 Gene3D G3DSA:2.60.120.10 7 104 3.0E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_1351 6ead9276743e66cc9369a62047d3af61 296 Pfam PF02311 AraC-like ligand binding domain 32 98 2.0E-7 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 SUPERFAMILY SSF51215 16 161 8.37E-21 T 13-10-2018 IPR037923 Transcription regulator HTH-like CLM_1351 6ead9276743e66cc9369a62047d3af61 296 Gene3D G3DSA:1.10.10.60 181 292 1.6E-22 T 13-10-2018 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 Pfam PF12833 Helix-turn-helix domain 212 290 2.0E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 SMART SM00342 206 289 1.3E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1351 6ead9276743e66cc9369a62047d3af61 296 SUPERFAMILY SSF46689 243 290 3.32E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2365 b15f5f52a3bec427d1d8ffb7cefd7195 238 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 10 217 2.6E-42 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_2365 b15f5f52a3bec427d1d8ffb7cefd7195 238 TIGRFAM TIGR02134 transald_staph: transaldolase 5 238 4.3E-116 T 13-10-2018 IPR011861 Transaldolase, Staphylococcus-type CLM_2365 b15f5f52a3bec427d1d8ffb7cefd7195 238 SUPERFAMILY SSF51569 9 236 9.89E-52 T 13-10-2018 CLM_2365 b15f5f52a3bec427d1d8ffb7cefd7195 238 Gene3D G3DSA:3.20.20.70 1 232 2.4E-53 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3573 7e750e85ab9622de5dd12b18acd84edc 294 Gene3D G3DSA:2.130.10.10 184 294 2.1E-8 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CLM_3573 7e750e85ab9622de5dd12b18acd84edc 294 Gene3D G3DSA:2.130.10.10 1 183 4.7E-25 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CLM_3573 7e750e85ab9622de5dd12b18acd84edc 294 SUPERFAMILY SSF50969 5 285 1.41E-30 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like CLM_0396 823edb3f68c9ec30be75ad0158bceb2a 502 Gene3D G3DSA:1.20.1570.10 206 334 9.3E-166 T 13-10-2018 CLM_0396 823edb3f68c9ec30be75ad0158bceb2a 502 Gene3D G3DSA:3.40.140.40 348 494 2.2E-53 T 13-10-2018 CLM_0396 823edb3f68c9ec30be75ad0158bceb2a 502 PIRSF PIRSF033132 1 502 5.6E-269 T 13-10-2018 IPR014999 Uncharacterised protein family UPF0371 CLM_0396 823edb3f68c9ec30be75ad0158bceb2a 502 Gene3D G3DSA:3.10.630.10 3 284 9.3E-166 T 13-10-2018 CLM_0396 823edb3f68c9ec30be75ad0158bceb2a 502 Hamap MF_01567 UPF0371 protein . 1 502 59.77 T 13-10-2018 IPR014999 Uncharacterised protein family UPF0371 CLM_0396 823edb3f68c9ec30be75ad0158bceb2a 502 Pfam PF08903 Domain of unknown function (DUF1846) 3 499 7.9E-239 T 13-10-2018 IPR014999 Uncharacterised protein family UPF0371 CLM_0091 d40c3aa13e6ef55e82bf731394306dda 302 PIRSF PIRSF028757 1 302 6.2E-95 T 13-10-2018 IPR003507 Peptidase family S66 CLM_0091 d40c3aa13e6ef55e82bf731394306dda 302 SUPERFAMILY SSF141986 137 296 7.59E-44 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLM_0091 d40c3aa13e6ef55e82bf731394306dda 302 Gene3D G3DSA:3.50.30.60 163 298 7.5E-44 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLM_0091 d40c3aa13e6ef55e82bf731394306dda 302 SUPERFAMILY SSF52317 2 160 2.11E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0091 d40c3aa13e6ef55e82bf731394306dda 302 Gene3D G3DSA:3.40.50.10740 1 154 1.3E-54 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CLM_0091 d40c3aa13e6ef55e82bf731394306dda 302 Pfam PF02016 LD-carboxypeptidase 12 290 9.0E-84 T 13-10-2018 IPR003507 Peptidase family S66 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 SUPERFAMILY SSF52467 436 556 1.53E-37 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 SUPERFAMILY SSF56645 7 242 3.53E-86 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 PRINTS PR00163 Rubredoxin signature 586 602 1.1E-8 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 PRINTS PR00163 Rubredoxin signature 616 632 1.1E-8 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 SUPERFAMILY SSF47203 227 380 3.7E-58 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 1.5E-50 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Pfam PF00301 Rubredoxin 587 632 1.2E-18 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Gene3D G3DSA:2.40.110.10 121 234 2.6E-43 T 13-10-2018 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Gene3D G3DSA:1.20.140.10 235 397 3.4E-55 T 13-10-2018 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 9.2E-37 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 ProSitePatterns PS00202 Rubredoxin signature. 616 626 - T 13-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Gene3D G3DSA:3.40.50.1220 434 565 1.3E-43 T 13-10-2018 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Gene3D G3DSA:2.20.28.10 578 635 7.8E-21 T 13-10-2018 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 501 527 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 1.0E-25 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 438 520 8.1E-27 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 SUPERFAMILY SSF57802 583 634 1.43E-18 T 13-10-2018 CLM_3210 c290a8e71156a90bf4f56c135680e76f 635 Gene3D G3DSA:1.10.540.10 2 120 8.4E-40 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CLM_1245 eedf08c29465e71e94f66c7ea89d8166 270 Pfam PF03180 NLPA lipoprotein 37 270 6.1E-97 T 13-10-2018 IPR004872 Lipoprotein NlpA family CLM_1245 eedf08c29465e71e94f66c7ea89d8166 270 Gene3D G3DSA:3.40.190.10 39 268 2.2E-101 T 13-10-2018 CLM_1245 eedf08c29465e71e94f66c7ea89d8166 270 Gene3D G3DSA:3.40.190.10 118 220 2.2E-101 T 13-10-2018 CLM_1245 eedf08c29465e71e94f66c7ea89d8166 270 SUPERFAMILY SSF53850 36 270 1.21E-85 T 13-10-2018 CLM_1245 eedf08c29465e71e94f66c7ea89d8166 270 PIRSF PIRSF002854 1 270 1.2E-109 T 13-10-2018 IPR004872 Lipoprotein NlpA family CLM_0796 21f426cd6cd677a08e68b6d57a2146b2 86 Gene3D G3DSA:1.10.150.20 1 86 2.8E-31 T 13-10-2018 CLM_0796 21f426cd6cd677a08e68b6d57a2146b2 86 Pfam PF04994 TfoX C-terminal domain 3 78 1.4E-23 T 13-10-2018 IPR007077 TfoX, C-terminal CLM_2053 4ebc75c4a59c1273baab434e540216bd 97 Pfam PF05135 Phage gp6-like head-tail connector protein 3 69 2.0E-10 T 13-10-2018 IPR021146 Phage gp6-like head-tail connector protein CLM_2053 4ebc75c4a59c1273baab434e540216bd 97 Gene3D G3DSA:1.10.3230.30 1 95 4.0E-5 T 13-10-2018 CLM_2053 4ebc75c4a59c1273baab434e540216bd 97 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 4 90 6.1E-12 T 13-10-2018 IPR006450 Phage protein of unkonwn function CLM_2156 d8ee9aadcff05a23cef728b9541a153c 159 Gene3D G3DSA:3.30.70.640 1 159 8.7E-69 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2156 d8ee9aadcff05a23cef728b9541a153c 159 SUPERFAMILY SSF55040 10 154 9.29E-61 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2156 d8ee9aadcff05a23cef728b9541a153c 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 1 157 36.572 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2156 d8ee9aadcff05a23cef728b9541a153c 159 Pfam PF01967 MoaC family 14 149 4.4E-56 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2156 d8ee9aadcff05a23cef728b9541a153c 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 3 151 2.3E-66 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_1611 6445ff392b1955c3543ab8434d11f8e6 433 SUPERFAMILY SSF56425 219 329 2.09E-33 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CLM_1611 6445ff392b1955c3543ab8434d11f8e6 433 Pfam PF00890 FAD binding domain 6 369 3.5E-77 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CLM_1611 6445ff392b1955c3543ab8434d11f8e6 433 Gene3D G3DSA:3.50.50.60 6 380 7.9E-129 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1611 6445ff392b1955c3543ab8434d11f8e6 433 Gene3D G3DSA:3.90.700.10 227 324 7.9E-129 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CLM_1611 6445ff392b1955c3543ab8434d11f8e6 433 SUPERFAMILY SSF51905 5 388 5.11E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2880 eae9efae2a7fa7bc0ace16e0f3339ca4 288 Gene3D G3DSA:2.20.28.50 28 64 2.9E-45 T 13-10-2018 CLM_2880 eae9efae2a7fa7bc0ace16e0f3339ca4 288 Gene3D G3DSA:3.30.1180.10 158 288 1.7E-40 T 13-10-2018 CLM_2880 eae9efae2a7fa7bc0ace16e0f3339ca4 288 Pfam PF02645 Uncharacterised protein, DegV family COG1307 5 285 1.6E-82 T 13-10-2018 IPR003797 DegV CLM_2880 eae9efae2a7fa7bc0ace16e0f3339ca4 288 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 5 283 3.8E-93 T 13-10-2018 IPR003797 DegV CLM_2880 eae9efae2a7fa7bc0ace16e0f3339ca4 288 Gene3D G3DSA:3.40.50.10440 5 147 2.9E-45 T 13-10-2018 CLM_2880 eae9efae2a7fa7bc0ace16e0f3339ca4 288 SUPERFAMILY SSF82549 4 285 1.1E-82 T 13-10-2018 CLM_3043 4ef28a78ace128704e5bceca368a1a80 305 Gene3D G3DSA:3.90.25.10 172 298 1.3E-102 T 13-10-2018 CLM_3043 4ef28a78ace128704e5bceca368a1a80 305 Gene3D G3DSA:3.40.50.720 3 234 1.3E-102 T 13-10-2018 CLM_3043 4ef28a78ace128704e5bceca368a1a80 305 SUPERFAMILY SSF51735 1 304 1.43E-89 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3043 4ef28a78ace128704e5bceca368a1a80 305 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 295 3.3E-56 T 13-10-2018 IPR016040 NAD(P)-binding domain CLM_0244 27dbd9917ac8e3ffb236df1c20389ad8 222 Gene3D G3DSA:3.30.240.20 165 222 3.7E-17 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0244 27dbd9917ac8e3ffb236df1c20389ad8 222 Gene3D G3DSA:3.30.240.20 77 151 5.7E-25 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0244 27dbd9917ac8e3ffb236df1c20389ad8 222 Pfam PF04239 Protein of unknown function (DUF421) 86 201 2.9E-37 T 13-10-2018 IPR007353 Protein of unknown function DUF421 CLM_0763 496cb28b0fb1fc75564d2058829c7e85 1182 SUPERFAMILY SSF52540 57 270 1.67E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 SUPERFAMILY SSF53383 102 458 1.86E-61 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 Pfam PF00155 Aminotransferase class I and II 137 449 2.8E-23 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 Gene3D G3DSA:3.40.640.10 140 356 4.6E-58 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 Gene3D G3DSA:1.10.10.10 14 88 8.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 87 3.7E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 SMART SM00345 28 87 3.4E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 Gene3D G3DSA:3.90.1150.10 124 457 4.6E-58 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2249 e5722e8e6329bb05e0d2142f07e4e67f 464 SUPERFAMILY SSF46785 21 95 1.01E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1688 872ef6bce7243260e46220a08ab92b8d 212 Pfam PF03006 Haemolysin-III related 8 203 1.2E-38 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 CLM_1688 872ef6bce7243260e46220a08ab92b8d 212 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 10 209 1.5E-64 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 CLM_3502 2c69cb2eefefe8d065d9d5a044981a61 367 Gene3D G3DSA:3.40.50.2000 166 350 5.8E-62 T 13-10-2018 CLM_3502 2c69cb2eefefe8d065d9d5a044981a61 367 Pfam PF00534 Glycosyl transferases group 1 179 341 6.3E-33 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_3502 2c69cb2eefefe8d065d9d5a044981a61 367 Gene3D G3DSA:3.40.50.2000 65 363 5.8E-62 T 13-10-2018 CLM_3502 2c69cb2eefefe8d065d9d5a044981a61 367 Pfam PF13439 Glycosyltransferase Family 4 62 169 1.4E-12 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_3502 2c69cb2eefefe8d065d9d5a044981a61 367 SUPERFAMILY SSF53756 1 366 6.63E-72 T 13-10-2018 CLM_0679 4a1ddf7eaa4417ac04825931da0bab44 334 Pfam PF02517 CAAX protease self-immunity 182 281 1.5E-15 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_1103 b01bf1dfe564609cbb87e7631789cf48 260 Pfam PF06180 Cobalt chelatase (CbiK) 6 259 1.5E-94 T 13-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 CLM_1103 b01bf1dfe564609cbb87e7631789cf48 260 PIRSF PIRSF033579 1 260 1.5E-99 T 13-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 CLM_1103 b01bf1dfe564609cbb87e7631789cf48 260 Gene3D G3DSA:3.40.50.1400 7 258 2.4E-98 T 13-10-2018 CLM_1103 b01bf1dfe564609cbb87e7631789cf48 260 Gene3D G3DSA:3.40.50.1400 117 240 2.4E-98 T 13-10-2018 CLM_1103 b01bf1dfe564609cbb87e7631789cf48 260 SUPERFAMILY SSF53800 5 258 7.46E-82 T 13-10-2018 CLM_2253 9b8f1188edbc31d8e89bebaf613612ab 825 Gene3D G3DSA:3.40.50.1820 594 819 1.5E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2253 9b8f1188edbc31d8e89bebaf613612ab 825 Gene3D G3DSA:2.60.40.10 49 132 1.3E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_2253 9b8f1188edbc31d8e89bebaf613612ab 825 SUPERFAMILY SSF103647 482 565 5.23E-6 T 13-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CLM_2253 9b8f1188edbc31d8e89bebaf613612ab 825 SUPERFAMILY SSF53474 573 775 7.54E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2253 9b8f1188edbc31d8e89bebaf613612ab 825 Pfam PF11187 Protein of unknown function (DUF2974) 633 768 2.6E-7 T 13-10-2018 IPR024499 Protein of unknown function DUF2974 CLM_4079 7c8bca8de413adae0213dfd358bc92dd 225 Pfam PF13263 PHP-associated 139 193 1.8E-17 T 13-10-2018 CLM_4079 7c8bca8de413adae0213dfd358bc92dd 225 SUPERFAMILY SSF89550 1 196 1.28E-40 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_4079 7c8bca8de413adae0213dfd358bc92dd 225 Pfam PF02811 PHP domain 4 95 2.2E-9 T 13-10-2018 IPR004013 PHP domain GO:0003824 CLM_4079 7c8bca8de413adae0213dfd358bc92dd 225 Gene3D G3DSA:3.20.20.140 1 207 4.1E-38 T 13-10-2018 CLM_4079 7c8bca8de413adae0213dfd358bc92dd 225 SMART SM00481 3 70 8.8E-9 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLM_1570 c831b25618262033a49e64a2d9034050 325 Gene3D G3DSA:1.10.287.130 120 169 4.5E-29 T 13-10-2018 CLM_1570 c831b25618262033a49e64a2d9034050 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 272 282 2.7E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1570 c831b25618262033a49e64a2d9034050 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 325 2.7E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1570 c831b25618262033a49e64a2d9034050 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 254 268 2.7E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1570 c831b25618262033a49e64a2d9034050 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 306 2.7E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1570 c831b25618262033a49e64a2d9034050 325 SMART SM00387 216 325 1.2E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1570 c831b25618262033a49e64a2d9034050 325 Gene3D G3DSA:3.30.565.10 170 324 4.5E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1570 c831b25618262033a49e64a2d9034050 325 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 217 324 7.4E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1570 c831b25618262033a49e64a2d9034050 325 SUPERFAMILY SSF55874 176 324 1.14E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1977 3c8bcc4dec3b1ac09303242b3f42029d 143 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CLM_1977 3c8bcc4dec3b1ac09303242b3f42029d 143 Pfam PF00085 Thioredoxin 46 139 1.4E-17 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CLM_1977 3c8bcc4dec3b1ac09303242b3f42029d 143 SUPERFAMILY SSF52833 48 140 7.93E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_1977 3c8bcc4dec3b1ac09303242b3f42029d 143 Gene3D G3DSA:3.40.30.10 31 143 3.9E-26 T 13-10-2018 CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 SUPERFAMILY SSF51735 143 279 1.41E-9 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 195 297 2.2E-11 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 10 95 2.7E-16 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 Gene3D G3DSA:3.40.50.720 139 281 5.8E-36 T 13-10-2018 CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 Gene3D G3DSA:3.40.50.720 4 297 5.8E-36 T 13-10-2018 CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 SMART SM01003 4 111 4.3E-7 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 SMART SM01002 147 273 8.3E-7 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CLM_0606 8c8623e2a9ebd0579822b0fc55e7a04d 317 SUPERFAMILY SSF52283 1 180 1.02E-27 T 13-10-2018 CLM_3319 81deb165ddba35281e607e9a70081622 147 Gene3D G3DSA:1.10.10.2520 3 96 6.4E-15 T 13-10-2018 CLM_3319 81deb165ddba35281e607e9a70081622 147 Pfam PF07486 Cell Wall Hydrolase 19 138 1.5E-18 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 ProSitePatterns PS01087 Radical activating enzymes signature. 26 47 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 Gene3D G3DSA:3.20.20.70 11 72 3.2E-14 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 Gene3D G3DSA:3.20.20.70 93 314 4.4E-66 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 Pfam PF13353 4Fe-4S single cluster domain 25 63 1.4E-5 T 13-10-2018 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 SUPERFAMILY SSF102114 95 283 2.75E-19 T 13-10-2018 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 Pfam PF04055 Radical SAM superfamily 33 253 5.1E-27 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 PIRSF PIRSF000371 6 315 3.6E-99 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 TIGRFAM TIGR04395 cutC_activ_rSAM: choline TMA-lyase-activating enzyme 9 317 1.1E-172 T 13-10-2018 IPR030905 Choline TMA-lyase-activating enzyme CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 15 308 2.8E-118 T 13-10-2018 CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 Pfam PF13187 4Fe-4S dicluster domain 64 111 1.1E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 Hamap MF_02059 Choline trimethylamine-lyase activating enzyme [cutD]. 8 317 62.197 T 13-10-2018 IPR030905 Choline TMA-lyase-activating enzyme CLM_2325 468a2ac0c85621885b1c7091f6b219d6 317 SUPERFAMILY SSF54862 14 158 1.85E-24 T 13-10-2018 CLM_3330 2eac1f6e3834504de4495ad514046f0f 229 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 20 223 1.8E-59 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 CLM_3330 2eac1f6e3834504de4495ad514046f0f 229 Gene3D G3DSA:3.40.50.150 1 160 5.4E-55 T 13-10-2018 CLM_3330 2eac1f6e3834504de4495ad514046f0f 229 PIRSF PIRSF018637 1 229 2.2E-70 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 CLM_3330 2eac1f6e3834504de4495ad514046f0f 229 SUPERFAMILY SSF53335 8 154 3.55E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 SUPERFAMILY SSF50685 290 339 8.02E-10 T 13-10-2018 IPR036908 RlpA-like domain superfamily CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 Gene3D G3DSA:2.20.230.10 131 232 8.3E-18 T 13-10-2018 CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 Pfam PF03990 Domain of unknown function (DUF348) 43 82 6.9E-9 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 Pfam PF03990 Domain of unknown function (DUF348) 99 138 2.2E-10 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 Pfam PF06725 3D domain 291 351 4.2E-22 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 Pfam PF07501 G5 domain 156 229 2.2E-19 T 13-10-2018 IPR011098 G5 domain CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 Gene3D G3DSA:2.40.40.10 265 336 9.2E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily CLM_0122 ed4ac6dd3849f39fd3c07bb3b52c0342 352 SMART SM01208 152 230 1.6E-24 T 13-10-2018 IPR011098 G5 domain CLM_3363 809458e2b77df503869ac33c18cbff0d 343 Pfam PF06144 DNA polymerase III, delta subunit 20 198 1.1E-38 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 CLM_3363 809458e2b77df503869ac33c18cbff0d 343 SUPERFAMILY SSF48019 222 338 3.23E-22 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CLM_3363 809458e2b77df503869ac33c18cbff0d 343 Gene3D G3DSA:1.20.272.10 220 342 1.1E-31 T 13-10-2018 CLM_3363 809458e2b77df503869ac33c18cbff0d 343 SUPERFAMILY SSF52540 16 217 3.98E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3363 809458e2b77df503869ac33c18cbff0d 343 Gene3D G3DSA:3.40.50.300 4 146 3.4E-26 T 13-10-2018 CLM_3363 809458e2b77df503869ac33c18cbff0d 343 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 337 6.5E-51 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 CLM_0797 1c1c4d9cd56b54073285aaf819b9e6e2 151 Pfam PF06445 GyrI-like small molecule binding domain 1 150 4.8E-27 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_0797 1c1c4d9cd56b54073285aaf819b9e6e2 151 SMART SM00871 1 151 9.7E-27 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_0797 1c1c4d9cd56b54073285aaf819b9e6e2 151 Gene3D G3DSA:3.20.80.10 1 151 1.6E-33 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0797 1c1c4d9cd56b54073285aaf819b9e6e2 151 SUPERFAMILY SSF55136 1 150 7.98E-29 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2747 b7d215623d10c33062768c2ed4935668 363 Pfam PF04055 Radical SAM superfamily 12 174 8.9E-23 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2747 b7d215623d10c33062768c2ed4935668 363 Gene3D G3DSA:3.80.30.20 9 255 5.1E-29 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_2747 b7d215623d10c33062768c2ed4935668 363 SMART SM00729 7 226 5.3E-42 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_2747 b7d215623d10c33062768c2ed4935668 363 Pfam PF13394 4Fe-4S single cluster domain 10 101 3.6E-6 T 13-10-2018 CLM_2747 b7d215623d10c33062768c2ed4935668 363 SUPERFAMILY SSF102114 11 271 2.35E-56 T 13-10-2018 CLM_2747 b7d215623d10c33062768c2ed4935668 363 Pfam PF16199 Radical_SAM C-terminal domain 187 272 1.0E-20 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 SUPERFAMILY SSF81271 372 444 1.28E-24 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Gene3D G3DSA:1.10.3210.10 1 189 1.6E-86 T 13-10-2018 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Pfam PF13291 ACT domain 643 720 1.5E-18 T 13-10-2018 IPR002912 ACT domain CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Pfam PF13328 HD domain 24 173 2.0E-52 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 SMART SM00954 233 343 1.7E-64 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Pfam PF04607 Region found in RelA / SpoT proteins 233 342 1.1E-36 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Gene3D G3DSA:3.30.460.10 191 323 2.3E-51 T 13-10-2018 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 SUPERFAMILY SSF81301 178 389 5.4E-67 T 13-10-2018 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 SUPERFAMILY SSF55021 648 721 5.5E-6 T 13-10-2018 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 24 720 3.9E-251 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Gene3D G3DSA:3.30.70.260 644 723 3.9E-12 T 13-10-2018 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Gene3D G3DSA:3.10.20.30 378 449 5.8E-35 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 SUPERFAMILY SSF109604 3 188 2.76E-75 T 13-10-2018 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 Pfam PF02824 TGS domain 385 444 9.4E-23 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CLM_3464 170fa8e0e903be1993c1e0417da663fd 723 SMART SM00471 39 151 2.0E-10 T 13-10-2018 IPR003607 HD/PDEase domain CLM_1456 2f434ea83cc8410e56b267c75354e799 550 Gene3D G3DSA:3.20.20.370 241 492 2.6E-5 T 13-10-2018 CLM_1456 2f434ea83cc8410e56b267c75354e799 550 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 230 463 6.5E-61 T 13-10-2018 IPR018763 Protein of unknown function DUF2334 CLM_1456 2f434ea83cc8410e56b267c75354e799 550 SUPERFAMILY SSF88713 244 393 9.85E-6 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 478 637 2.2E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 Gene3D G3DSA:1.10.287.950 326 642 2.0E-59 T 13-10-2018 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 SMART SM00304 326 381 1.3E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 SUPERFAMILY SSF58104 356 684 5.23E-60 T 13-10-2018 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 Gene3D G3DSA:3.30.450.20 94 198 9.2E-36 T 13-10-2018 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 SUPERFAMILY SSF103190 145 207 2.55E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 Pfam PF02743 Cache domain 48 289 1.1E-35 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 Gene3D G3DSA:3.30.450.20 199 299 9.2E-36 T 13-10-2018 CLM_3175 3b6092a3c931f1e4299fe230e12466a9 686 SMART SM00283 410 685 1.7E-53 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0496 7f7db7ce3407f031cad231741386fb13 453 Gene3D G3DSA:3.20.20.70 40 373 2.5E-71 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0496 7f7db7ce3407f031cad231741386fb13 453 SUPERFAMILY SSF51569 42 343 3.85E-57 T 13-10-2018 CLM_0496 7f7db7ce3407f031cad231741386fb13 453 Pfam PF00682 HMGL-like 50 325 5.1E-27 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CLM_4134 830c7b853e1eb7730c80a23a6b820260 382 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 37 382 2.1E-83 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_4134 830c7b853e1eb7730c80a23a6b820260 382 Gene3D G3DSA:1.20.1270.370 21 221 5.5E-40 T 13-10-2018 CLM_4134 830c7b853e1eb7730c80a23a6b820260 382 Gene3D G3DSA:3.40.50.11900 239 382 2.0E-43 T 13-10-2018 CLM_4134 830c7b853e1eb7730c80a23a6b820260 382 Gene3D G3DSA:3.40.50.11890 30 156 5.5E-40 T 13-10-2018 CLM_3021 74910ae61a2232abe2165b8b5a2e5984 139 Pfam PF12611 Putative flagellar 115 138 3.1E-13 T 13-10-2018 IPR013367 Flagellar, putative CLM_3021 74910ae61a2232abe2165b8b5a2e5984 139 TIGRFAM TIGR02530 flg_new: flagellar operon protein 34 139 1.4E-33 T 13-10-2018 IPR013367 Flagellar, putative CLM_0936 8d52b110a12f6c768f20c62077853fce 237 Gene3D G3DSA:3.40.50.2300 1 122 1.2E-34 T 13-10-2018 CLM_0936 8d52b110a12f6c768f20c62077853fce 237 SUPERFAMILY SSF46894 133 235 1.25E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0936 8d52b110a12f6c768f20c62077853fce 237 Pfam PF00072 Response regulator receiver domain 4 113 2.4E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0936 8d52b110a12f6c768f20c62077853fce 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 234 2.3E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0936 8d52b110a12f6c768f20c62077853fce 237 SMART SM00448 2 112 5.0E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0936 8d52b110a12f6c768f20c62077853fce 237 SMART SM00862 157 235 2.0E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0936 8d52b110a12f6c768f20c62077853fce 237 Gene3D G3DSA:1.10.10.10 138 237 3.3E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0936 8d52b110a12f6c768f20c62077853fce 237 SUPERFAMILY SSF52172 3 125 8.54E-38 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1177 367c3865aed3ef76a6453855cfeea329 204 SUPERFAMILY SSF48498 85 202 2.26E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_1177 367c3865aed3ef76a6453855cfeea329 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 61 6.2E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_1177 367c3865aed3ef76a6453855cfeea329 204 Pfam PF13305 WHG domain 95 180 1.3E-9 T 13-10-2018 IPR025996 WHG domain CLM_1177 367c3865aed3ef76a6453855cfeea329 204 SUPERFAMILY SSF46689 6 78 1.13E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1177 367c3865aed3ef76a6453855cfeea329 204 Gene3D G3DSA:1.10.357.10 62 204 7.0E-16 T 13-10-2018 CLM_1177 367c3865aed3ef76a6453855cfeea329 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_1177 367c3865aed3ef76a6453855cfeea329 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_1177 367c3865aed3ef76a6453855cfeea329 204 Gene3D G3DSA:1.10.10.60 14 61 3.9E-14 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Gene3D G3DSA:2.40.50.140 104 185 1.0E-8 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SUPERFAMILY SSF50249 264 359 1.93E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Gene3D G3DSA:2.40.50.140 279 362 6.7E-30 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SUPERFAMILY SSF50249 110 191 3.62E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Pfam PF00575 S1 RNA binding domain 22 93 1.5E-6 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Pfam PF00575 S1 RNA binding domain 195 266 1.6E-23 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Pfam PF00575 S1 RNA binding domain 280 352 1.5E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Pfam PF00575 S1 RNA binding domain 110 175 4.7E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SMART SM00316 22 93 6.6E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SMART SM00316 281 352 2.4E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SMART SM00316 109 177 1.3E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SMART SM00316 196 266 1.5E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SUPERFAMILY SSF50249 6 115 4.0E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Gene3D G3DSA:2.40.50.140 9 103 1.0E-13 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 218 239 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 24 42 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 114 130 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 335 353 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 132 149 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 296 315 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 90 109 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 42 56 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 PRINTS PR00681 Ribosomal protein S1 signature 161 181 8.8E-51 T 13-10-2018 CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 SUPERFAMILY SSF50249 195 283 1.36E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1310 56e9cf2d55a354b6ac1f172b83597948 387 Gene3D G3DSA:2.40.50.140 188 278 2.1E-28 T 13-10-2018 CLM_0776 de27c6cd1d3a741958cd1735cfebda3c 394 Pfam PF03616 Sodium/glutamate symporter 4 362 1.9E-122 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CLM_0776 de27c6cd1d3a741958cd1735cfebda3c 394 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 4 392 6.1E-115 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CLM_0776 de27c6cd1d3a741958cd1735cfebda3c 394 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 393 23.693 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CLM_1111 f1898006ca6debe1757675ce031f4d1a 340 Gene3D G3DSA:3.90.105.10 1 55 5.0E-7 T 13-10-2018 CLM_1111 f1898006ca6debe1757675ce031f4d1a 340 Pfam PF00994 Probable molybdopterin binding domain 174 302 4.2E-21 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_1111 f1898006ca6debe1757675ce031f4d1a 340 Gene3D G3DSA:3.40.980.10 146 307 1.6E-31 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_1111 f1898006ca6debe1757675ce031f4d1a 340 SMART SM00852 173 305 1.1E-23 T 13-10-2018 IPR001453 MoaB/Mog domain CLM_1111 f1898006ca6debe1757675ce031f4d1a 340 SUPERFAMILY SSF53218 169 337 6.02E-35 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CLM_2891 7afa1390ad30194f7ed7bcf5b9a77b7e 512 Gene3D G3DSA:3.40.50.12780 1 404 3.9E-32 T 13-10-2018 CLM_2891 7afa1390ad30194f7ed7bcf5b9a77b7e 512 Pfam PF00501 AMP-binding enzyme 139 406 1.5E-29 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_2891 7afa1390ad30194f7ed7bcf5b9a77b7e 512 SUPERFAMILY SSF56801 19 465 1.22E-38 T 13-10-2018 CLM_2025 85bd2d5ff4d41958979464ea835db094 271 SUPERFAMILY SSF53167 3 271 5.76E-96 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CLM_2025 85bd2d5ff4d41958979464ea835db094 271 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 22 268 9.8E-108 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CLM_2025 85bd2d5ff4d41958979464ea835db094 271 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 22 268 1.8E-110 T 13-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CLM_2025 85bd2d5ff4d41958979464ea835db094 271 PIRSF PIRSF000477 2 271 2.5E-111 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CLM_2025 85bd2d5ff4d41958979464ea835db094 271 Pfam PF01048 Phosphorylase superfamily 23 268 1.2E-56 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CLM_2025 85bd2d5ff4d41958979464ea835db094 271 Gene3D G3DSA:3.40.50.1580 2 270 4.9E-114 T 13-10-2018 CLM_0690 edb07480c1329d69c7d7cf8c831c2584 39 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 20 31 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0690 edb07480c1329d69c7d7cf8c831c2584 39 TIGRFAM TIGR04333 Clo7Bot_mod_Cys: Cys-rich peptide, Clo7bot family 1 36 5.6E-16 T 13-10-2018 IPR027601 Cys-rich peptide, Clo7bot family CLM_3024 8ba1fe87430610834664f23fbc6288ff 145 Pfam PF02050 Flagellar FliJ protein 20 138 8.0E-22 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 CLM_3024 8ba1fe87430610834664f23fbc6288ff 145 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 140 5.3E-22 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 CLM_1601 86b2eb34720acb5fc1f6b9715bede031 399 SUPERFAMILY SSF56796 15 397 6.67E-99 T 13-10-2018 CLM_1601 86b2eb34720acb5fc1f6b9715bede031 399 Gene3D G3DSA:1.20.1090.10 198 398 1.3E-40 T 13-10-2018 CLM_1601 86b2eb34720acb5fc1f6b9715bede031 399 Gene3D G3DSA:3.40.50.1970 11 197 2.9E-49 T 13-10-2018 CLM_1601 86b2eb34720acb5fc1f6b9715bede031 399 Pfam PF00465 Iron-containing alcohol dehydrogenase 18 375 4.7E-91 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_3304 7985ca9a94007a042561ffb4b7bc90b3 165 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 99 116 - T 13-10-2018 IPR000614 Free Met sulfoxide reductase conserved site CLM_3304 7985ca9a94007a042561ffb4b7bc90b3 165 Gene3D G3DSA:3.30.450.40 10 163 2.8E-57 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_3304 7985ca9a94007a042561ffb4b7bc90b3 165 SUPERFAMILY SSF55781 6 161 1.13E-41 T 13-10-2018 CLM_3304 7985ca9a94007a042561ffb4b7bc90b3 165 Pfam PF13185 GAF domain 46 150 1.9E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 CLM_1722 69fb268435a8dbcdbada05a76ab7300e 223 Gene3D G3DSA:1.10.3720.10 1 219 3.9E-59 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1722 69fb268435a8dbcdbada05a76ab7300e 223 SUPERFAMILY SSF161098 2 211 4.58E-50 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1722 69fb268435a8dbcdbada05a76ab7300e 223 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 7 214 5.4E-72 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 CLM_1722 69fb268435a8dbcdbada05a76ab7300e 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 22 209 4.7E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Gene3D G3DSA:3.40.50.300 276 393 4.0E-27 T 13-10-2018 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Gene3D G3DSA:3.40.50.300 519 685 8.9E-43 T 13-10-2018 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 TIGRFAM TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit 1 1144 0.0 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Pfam PF12705 PD-(D/E)XK nuclease superfamily 775 1116 2.9E-57 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Hamap MF_01452 ATP-dependent helicase/deoxyribonuclease subunit B [addB]. 1 1147 66.66 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 333 682 1.4E-16 T 13-10-2018 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Gene3D G3DSA:3.40.50.300 1 110 1.8E-26 T 13-10-2018 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 Gene3D G3DSA:3.40.50.300 111 269 3.3E-23 T 13-10-2018 CLM_0506 f9d7814fcab59b615d4656588dd603c7 1147 SUPERFAMILY SSF52540 289 735 1.81E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1319 7ace567e69d5e58abba14e0d43d002c8 365 Pfam PF00294 pfkB family carbohydrate kinase 60 348 3.3E-45 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CLM_1319 7ace567e69d5e58abba14e0d43d002c8 365 SUPERFAMILY SSF46785 1 54 6.59E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1319 7ace567e69d5e58abba14e0d43d002c8 365 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 47 1.9E-10 T 13-10-2018 CLM_1319 7ace567e69d5e58abba14e0d43d002c8 365 SUPERFAMILY SSF53613 61 360 5.77E-59 T 13-10-2018 IPR029056 Ribokinase-like CLM_1319 7ace567e69d5e58abba14e0d43d002c8 365 Gene3D G3DSA:3.40.1190.20 54 364 9.2E-76 T 13-10-2018 IPR029056 Ribokinase-like CLM_1319 7ace567e69d5e58abba14e0d43d002c8 365 Gene3D G3DSA:1.10.10.10 1 50 1.7E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Pfam PF11799 impB/mucB/samB family C-terminal domain 232 338 6.4E-18 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Gene3D G3DSA:3.30.1490.100 237 343 1.7E-29 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Gene3D G3DSA:2.30.40.20 12 71 1.7E-28 T 13-10-2018 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Gene3D G3DSA:1.10.150.20 173 226 8.1E-14 T 13-10-2018 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 SUPERFAMILY SSF100879 235 335 1.22E-28 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Gene3D G3DSA:3.30.70.270 72 162 4.0E-31 T 13-10-2018 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 SUPERFAMILY SSF56672 2 231 4.18E-85 T 13-10-2018 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Pfam PF11798 IMS family HHH motif 165 194 7.9E-7 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Pfam PF00817 impB/mucB/samB family 8 151 9.0E-48 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CLM_3181 cbd50b737da23899f43c16f602f95ba9 349 Hamap MF_01113 DNA polymerase IV [dinB]. 2 346 38.138 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CLM_1470 89e0ed998db04545009390749f8e372c 415 Gene3D G3DSA:1.10.287.130 132 256 3.2E-14 T 13-10-2018 CLM_1470 89e0ed998db04545009390749f8e372c 415 Pfam PF00512 His Kinase A (phospho-acceptor) domain 197 260 8.2E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1470 89e0ed998db04545009390749f8e372c 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 411 2.7E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1470 89e0ed998db04545009390749f8e372c 415 SMART SM00388 194 260 5.0E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1470 89e0ed998db04545009390749f8e372c 415 SUPERFAMILY SSF55874 251 413 5.63E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1470 89e0ed998db04545009390749f8e372c 415 Gene3D G3DSA:3.30.565.10 262 415 3.6E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1470 89e0ed998db04545009390749f8e372c 415 SMART SM00387 305 415 7.1E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1470 89e0ed998db04545009390749f8e372c 415 SUPERFAMILY SSF47384 182 260 1.43E-10 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1470 89e0ed998db04545009390749f8e372c 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 414 2.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1470 89e0ed998db04545009390749f8e372c 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 395 2.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1470 89e0ed998db04545009390749f8e372c 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 2.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1470 89e0ed998db04545009390749f8e372c 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 2.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 SUPERFAMILY SSF54713 152 305 8.9E-51 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 ProSitePatterns PS01126 Elongation factor Ts signature 1. 10 25 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 SUPERFAMILY SSF46934 2 53 2.52E-20 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 SUPERFAMILY SSF54713 54 147 1.57E-19 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 Pfam PF00889 Elongation factor TS 71 286 6.3E-70 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 Gene3D G3DSA:3.30.479.20 55 151 6.6E-28 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 Gene3D G3DSA:3.30.479.20 152 285 1.5E-49 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 Gene3D G3DSA:1.10.8.10 1 54 1.1E-26 T 13-10-2018 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 Hamap MF_00050 Elongation factor Ts [tsf]. 1 303 75.636 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 Gene3D G3DSA:1.10.286.20 200 244 1.5E-49 T 13-10-2018 CLM_2727 991e5aec78647db79dc596d13f4e66d8 307 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 2 304 9.5E-96 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3367 15593518cfab2ff2f5bafdc15a6d9bcb 504 Pfam PF07556 Protein of unknown function (DUF1538) 18 228 5.6E-60 T 13-10-2018 IPR011435 Protein of unknown function DUF1538 CLM_3367 15593518cfab2ff2f5bafdc15a6d9bcb 504 Pfam PF07556 Protein of unknown function (DUF1538) 271 482 1.4E-69 T 13-10-2018 IPR011435 Protein of unknown function DUF1538 CLM_2087 618e1d0f4b0a0197d2f6e42764ce6ddb 330 SUPERFAMILY SSF56349 8 315 4.71E-56 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_2087 618e1d0f4b0a0197d2f6e42764ce6ddb 330 Pfam PF00589 Phage integrase family 138 307 3.6E-35 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_2087 618e1d0f4b0a0197d2f6e42764ce6ddb 330 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 9 117 1.0E-8 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CLM_2087 618e1d0f4b0a0197d2f6e42764ce6ddb 330 Gene3D G3DSA:1.10.443.10 135 328 8.2E-43 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_2087 618e1d0f4b0a0197d2f6e42764ce6ddb 330 Gene3D G3DSA:1.10.150.130 2 134 3.3E-23 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_3240 201afc97f31572ccb9bb0ccbd308eedb 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_3240 201afc97f31572ccb9bb0ccbd308eedb 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_3240 201afc97f31572ccb9bb0ccbd308eedb 202 SUPERFAMILY SSF46689 3 64 2.26E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3240 201afc97f31572ccb9bb0ccbd308eedb 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 4.1E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_3240 201afc97f31572ccb9bb0ccbd308eedb 202 Gene3D G3DSA:1.10.357.10 4 189 1.2E-19 T 13-10-2018 CLM_3172 02a0bd6f752010ede97a3a8bceeee6d6 213 Gene3D G3DSA:3.30.70.20 162 212 5.3E-10 T 13-10-2018 CLM_3172 02a0bd6f752010ede97a3a8bceeee6d6 213 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_3172 02a0bd6f752010ede97a3a8bceeee6d6 213 SUPERFAMILY SSF54862 49 212 1.73E-16 T 13-10-2018 CLM_3172 02a0bd6f752010ede97a3a8bceeee6d6 213 Pfam PF13187 4Fe-4S dicluster domain 168 211 6.5E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3172 02a0bd6f752010ede97a3a8bceeee6d6 213 Pfam PF12801 4Fe-4S binding domain 31 66 6.3E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_3172 02a0bd6f752010ede97a3a8bceeee6d6 213 Pfam PF12801 4Fe-4S binding domain 121 157 3.1E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0637 026c1358d9edc02f37edfdbea262a0db 196 Gene3D G3DSA:2.30.30.110 69 196 7.1E-36 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CLM_0637 026c1358d9edc02f37edfdbea262a0db 196 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 83 194 1.3E-29 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 CLM_0637 026c1358d9edc02f37edfdbea262a0db 196 SUPERFAMILY SSF50118 80 195 1.44E-27 T 13-10-2018 CLM_1631 3917cc5017f58b3195785dadb5da576a 165 Pfam PF07352 Bacteriophage Mu Gam like protein 14 163 9.1E-30 T 13-10-2018 IPR009951 Host-nuclease inhibitor protein Gam GO:0003690|GO:0042262 CLM_1631 3917cc5017f58b3195785dadb5da576a 165 SUPERFAMILY SSF161266 7 134 9.68E-20 T 13-10-2018 CLM_1715 d1e7cc0dc64596595a0aaa1882e08cb3 178 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 4 177 37.678 T 13-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CLM_1715 d1e7cc0dc64596595a0aaa1882e08cb3 178 SUPERFAMILY SSF53271 6 171 5.24E-43 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_1715 d1e7cc0dc64596595a0aaa1882e08cb3 178 Gene3D G3DSA:3.40.50.2020 2 178 1.5E-59 T 13-10-2018 CLM_1715 d1e7cc0dc64596595a0aaa1882e08cb3 178 Pfam PF00156 Phosphoribosyl transferase domain 6 160 1.0E-22 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 SUPERFAMILY SSF63411 3 205 3.33E-65 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 Gene3D G3DSA:3.30.830.10 2 215 1.3E-75 T 13-10-2018 CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 Gene3D G3DSA:3.30.830.10 221 418 5.1E-45 T 13-10-2018 CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 SUPERFAMILY SSF63411 226 416 5.81E-39 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 Pfam PF05193 Peptidase M16 inactive domain 166 341 2.1E-38 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CLM_2704 c51a4a6a24652eb484eb59c16c2bd6b5 433 Pfam PF00675 Insulinase (Peptidase family M16) 12 159 9.7E-42 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CLM_0727 a638590d8e6449230033c11532041309 208 PIRSF PIRSF000440 1 208 6.4E-63 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_0727 a638590d8e6449230033c11532041309 208 Pfam PF00302 Chloramphenicol acetyltransferase 2 201 2.1E-42 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_0727 a638590d8e6449230033c11532041309 208 SMART SM01059 1 201 1.6E-96 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_0727 a638590d8e6449230033c11532041309 208 Gene3D G3DSA:3.30.559.10 1 205 2.7E-62 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_0727 a638590d8e6449230033c11532041309 208 SUPERFAMILY SSF52777 2 206 1.42E-54 T 13-10-2018 CLM_0727 a638590d8e6449230033c11532041309 208 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 11 200 1.0E-74 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 Gene3D G3DSA:3.90.1150.10 115 474 8.4E-99 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 Pfam PF00155 Aminotransferase class I and II 132 467 2.9E-32 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.2E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.2E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 Gene3D G3DSA:3.40.640.10 153 373 8.4E-99 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 3.1E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 SUPERFAMILY SSF53383 114 480 7.53E-86 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 Gene3D G3DSA:1.10.10.10 2 87 1.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 SUPERFAMILY SSF46785 7 84 5.81E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0544 332b9897ad7db42f2e1d7e10677a1a1b 483 SMART SM00345 17 76 6.8E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 PIRSF PIRSF000485 10 457 2.1E-149 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 SUPERFAMILY SSF53271 252 456 3.15E-55 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 SUPERFAMILY SSF56235 14 243 3.09E-61 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 Pfam PF00156 Phosphoribosyl transferase domain 281 389 1.5E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 13 455 42.091 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 Pfam PF13537 Glutamine amidotransferase domain 93 214 4.4E-19 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 14 455 4.4E-131 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 Gene3D G3DSA:3.40.50.2020 276 440 3.5E-142 T 13-10-2018 CLM_3308 e38345d42ba28938aebd59b4aa8e0cfe 458 Gene3D G3DSA:3.60.20.10 14 456 3.5E-142 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_1703 9c5c327fb2168312d75d67ea6f063194 150 Hamap MF_01197 Cell division protein SepF [sepF]. 3 139 17.717 T 13-10-2018 IPR023052 Cell division protein SepF GO:0090529 CLM_1703 9c5c327fb2168312d75d67ea6f063194 150 Pfam PF04472 Cell division protein SepF 60 131 2.0E-24 T 13-10-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 CLM_1703 9c5c327fb2168312d75d67ea6f063194 150 Gene3D G3DSA:3.30.110.150 55 148 2.3E-26 T 13-10-2018 IPR038594 SepF-like superfamily CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 Pfam PF00717 Peptidase S24-like 32 101 7.0E-19 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 SUPERFAMILY SSF51306 24 169 2.09E-52 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 25 41 3.7E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 77 89 3.7E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 121 140 3.7E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 ProSitePatterns PS00501 Signal peptidases I serine active site. 34 41 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 9 163 1.7E-52 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 Gene3D G3DSA:2.10.109.10 116 173 1.3E-11 T 13-10-2018 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 Gene3D G3DSA:2.10.109.10 21 113 1.1E-21 T 13-10-2018 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 ProSitePatterns PS00760 Signal peptidases I lysine active site. 79 91 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 CLM_2736 82300b4b4af7717e11aeb41921bbebc5 174 ProSitePatterns PS00761 Signal peptidases I signature 3. 126 139 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 CLM_2692 e79c518402d16124a6fde21497c0fccb 118 Gene3D G3DSA:1.10.3730.20 2 118 3.1E-10 T 13-10-2018 CLM_2692 e79c518402d16124a6fde21497c0fccb 118 SUPERFAMILY SSF103481 41 117 9.81E-15 T 13-10-2018 CLM_2692 e79c518402d16124a6fde21497c0fccb 118 Pfam PF00892 EamA-like transporter family 49 116 1.3E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 323 347 7.4E-16 T 13-10-2018 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 282 294 7.4E-16 T 13-10-2018 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 178 194 7.4E-16 T 13-10-2018 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 210 224 7.4E-16 T 13-10-2018 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 SUPERFAMILY SSF53335 8 568 4.27E-120 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 285 291 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 Pfam PF12161 HsdM N-terminal domain 12 141 9.5E-23 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 Gene3D G3DSA:3.40.50.150 157 470 2.8E-98 T 13-10-2018 CLM_2296 e85e7b2f767a08408ecacdb0bc5c5153 571 Pfam PF02384 N-6 DNA Methylase 158 450 3.5E-64 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CLM_2329 d655b6028b41cbd33afdb3f866cdd932 98 SUPERFAMILY SSF143414 7 93 4.97E-27 T 13-10-2018 IPR037233 CcmK-like superfamily CLM_2329 d655b6028b41cbd33afdb3f866cdd932 98 Pfam PF00936 BMC domain 8 83 1.2E-27 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2329 d655b6028b41cbd33afdb3f866cdd932 98 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 6 53 7.0E-17 T 13-10-2018 CLM_2329 d655b6028b41cbd33afdb3f866cdd932 98 SMART SM00877 7 83 3.3E-34 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2329 d655b6028b41cbd33afdb3f866cdd932 98 Gene3D G3DSA:3.30.70.1710 2 97 5.6E-35 T 13-10-2018 CLM_2125 573028eb42c8331fee28a701c2a26e60 396 Pfam PF00482 Type II secretion system (T2SS), protein F 266 388 4.5E-21 T 13-10-2018 IPR018076 Type II secretion system F domain CLM_2125 573028eb42c8331fee28a701c2a26e60 396 Pfam PF00482 Type II secretion system (T2SS), protein F 64 186 5.0E-19 T 13-10-2018 IPR018076 Type II secretion system F domain CLM_2125 573028eb42c8331fee28a701c2a26e60 396 Gene3D G3DSA:1.20.81.30 249 362 1.4E-22 T 13-10-2018 CLM_2125 573028eb42c8331fee28a701c2a26e60 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 361 375 2.7E-12 T 13-10-2018 IPR003004 GspF/PilC family CLM_2125 573028eb42c8331fee28a701c2a26e60 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 377 396 2.7E-12 T 13-10-2018 IPR003004 GspF/PilC family CLM_2125 573028eb42c8331fee28a701c2a26e60 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 158 186 2.7E-12 T 13-10-2018 IPR003004 GspF/PilC family CLM_2125 573028eb42c8331fee28a701c2a26e60 396 Gene3D G3DSA:1.20.81.30 50 165 1.3E-21 T 13-10-2018 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 SUPERFAMILY SSF64153 10 221 3.66E-55 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 5 212 24.816 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 234 494 1.6E-64 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 Pfam PF03853 YjeF-related protein N-terminus 26 191 8.2E-43 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 Pfam PF01256 Carbohydrate kinase 251 490 1.7E-60 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 SUPERFAMILY SSF53613 231 497 1.05E-72 T 13-10-2018 IPR029056 Ribokinase-like CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 Gene3D G3DSA:3.40.50.10260 2 218 1.2E-62 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 5 213 2.0E-47 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 PIRSF PIRSF017184 1 499 1.3E-139 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 Gene3D G3DSA:3.40.1190.20 225 500 4.6E-86 T 13-10-2018 IPR029056 Ribokinase-like CLM_3862 a8c0ae8e1af5bf84f131587a03a73f18 500 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 227 499 21.738 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CLM_2358 2304e6a64f70f8fd29edc12e45ff0ade 663 PIRSF PIRSF018968 1 663 2.9E-70 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 CLM_2358 2304e6a64f70f8fd29edc12e45ff0ade 663 Pfam PF02687 FtsX-like permease family 88 184 1.8E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1729 72ed7599abc33f05b64393129cecfe75 576 Gene3D G3DSA:3.10.20.30 4 89 9.2E-17 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_1729 72ed7599abc33f05b64393129cecfe75 576 Pfam PF14574 Domain of unknown function (DUF4445) 176 574 9.6E-140 T 13-10-2018 IPR027980 Protein of unknown function DUF4445 CLM_1729 72ed7599abc33f05b64393129cecfe75 576 SUPERFAMILY SSF54292 2 87 8.52E-17 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CLM_1729 72ed7599abc33f05b64393129cecfe75 576 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 77 2.5E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CLM_1729 72ed7599abc33f05b64393129cecfe75 576 Gene3D G3DSA:3.30.420.480 173 353 1.5E-54 T 13-10-2018 CLM_0580 828bf68f3a5876e4789b9abe906acc5b 374 Pfam PF12698 ABC-2 family transporter protein 21 366 2.3E-32 T 13-10-2018 CLM_2826 9391d3d2fbeb8c73e3c6c27c68e2bb3b 217 SUPERFAMILY SSF109755 2 216 3.98E-76 T 13-10-2018 CLM_2826 9391d3d2fbeb8c73e3c6c27c68e2bb3b 217 Gene3D G3DSA:1.20.58.220 1 217 2.9E-81 T 13-10-2018 IPR038078 PhoU-like domain superfamily CLM_2826 9391d3d2fbeb8c73e3c6c27c68e2bb3b 217 Pfam PF01895 PhoU domain 16 103 3.0E-27 T 13-10-2018 IPR026022 PhoU domain CLM_2826 9391d3d2fbeb8c73e3c6c27c68e2bb3b 217 Pfam PF01895 PhoU domain 120 204 4.3E-21 T 13-10-2018 IPR026022 PhoU domain CLM_2826 9391d3d2fbeb8c73e3c6c27c68e2bb3b 217 PIRSF PIRSF003107 1 217 1.0E-70 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CLM_2826 9391d3d2fbeb8c73e3c6c27c68e2bb3b 217 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 4 213 2.5E-73 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CLM_0366 7c748ef0dda0ccd4bc59bed1dbb9f135 238 SUPERFAMILY SSF53474 3 228 5.87E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0366 7c748ef0dda0ccd4bc59bed1dbb9f135 238 Pfam PF00975 Thioesterase domain 2 226 2.0E-39 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 CLM_0366 7c748ef0dda0ccd4bc59bed1dbb9f135 238 Gene3D G3DSA:3.40.50.1820 1 232 4.0E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Pfam PF07953 Clostridium neurotoxin, N-terminal receptor binding 886 1079 1.3E-74 T 13-10-2018 IPR012928 Clostridium neurotoxin, receptor binding N-terminal GO:0005576|GO:0009405|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 SUPERFAMILY SSF58091 549 874 3.14E-111 T 13-10-2018 IPR036248 Clostridium neurotoxin, translocation domain CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Pfam PF07951 Clostridium neurotoxin, C-terminal receptor binding 1088 1293 1.2E-92 T 13-10-2018 IPR013104 Clostridium neurotoxin, receptor-binding C-terminal GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:3.90.1240.10 424 540 1.6E-25 T 13-10-2018 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:3.90.1240.10 8 250 5.6E-100 T 13-10-2018 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 SUPERFAMILY SSF50386 1080 1293 1.79E-78 T 13-10-2018 IPR011065 Kunitz inhibitor STI-like superfamily CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 PRINTS PR00760 Bontoxilysin signature 7 23 1.6E-30 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 PRINTS PR00760 Bontoxilysin signature 213 225 1.6E-30 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 PRINTS PR00760 Bontoxilysin signature 33 49 1.6E-30 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 PRINTS PR00760 Bontoxilysin signature 97 119 1.6E-30 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 PRINTS PR00760 Bontoxilysin signature 259 275 1.6E-30 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 PRINTS PR00760 Bontoxilysin signature 72 88 1.6E-30 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 SUPERFAMILY SSF49899 875 1079 3.96E-49 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Pfam PF01742 Clostridial neurotoxin zinc protease 4 409 2.0E-183 T 13-10-2018 IPR000395 Botulinum/Tetanus toxin, catalytic chain GO:0004222|GO:0006508|GO:0008270|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:2.80.10.50 1100 1296 9.0E-82 T 13-10-2018 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:1.20.1120.10 549 869 7.1E-143 T 13-10-2018 IPR036248 Clostridium neurotoxin, translocation domain CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 SUPERFAMILY SSF55486 2 546 2.38E-189 T 13-10-2018 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:4.10.1280.10 361 423 1.1E-39 T 13-10-2018 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Pfam PF07952 Clostridium neurotoxin, Translocation domain 549 866 6.5E-153 T 13-10-2018 IPR012500 Clostridium neurotoxin, translocation GO:0008320|GO:0009405|GO:0046929 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:1.20.58.540 258 360 3.9E-41 T 13-10-2018 CLM_0897 78bad812e08989c0d9258b721fbef5ce 1296 Gene3D G3DSA:2.60.120.200 870 1099 8.7E-56 T 13-10-2018 CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Gene3D G3DSA:3.40.350.10 1 147 1.0E-48 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2472 4355956d89c4c1f667361d14db6ad298 597 SUPERFAMILY SSF53092 10 129 3.49E-14 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2472 4355956d89c4c1f667361d14db6ad298 597 SUPERFAMILY SSF53092 169 288 8.37E-5 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Pfam PF16189 Creatinase/Prolidase N-terminal domain 149 308 1.7E-50 T 13-10-2018 CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Pfam PF00557 Metallopeptidase family M24 310 526 5.2E-39 T 13-10-2018 IPR000994 Peptidase M24 CLM_2472 4355956d89c4c1f667361d14db6ad298 597 SUPERFAMILY SSF55920 305 561 4.97E-52 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Gene3D G3DSA:3.90.230.10 302 596 3.0E-89 T 13-10-2018 CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Pfam PF16188 C-terminal region of peptidase_M24 536 596 3.1E-22 T 13-10-2018 IPR032416 Peptidase M24, C-terminal domain CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Gene3D G3DSA:3.40.350.10 148 298 1.0E-45 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_2472 4355956d89c4c1f667361d14db6ad298 597 Pfam PF01321 Creatinase/Prolidase N-terminal domain 6 129 4.3E-17 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 Pfam PF01795 MraW methylase family 2 309 1.2E-131 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 SUPERFAMILY SSF53335 5 308 5.76E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 SUPERFAMILY SSF81799 113 213 2.22E-37 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 Gene3D G3DSA:3.40.50.150 5 306 8.9E-111 T 13-10-2018 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 308 7.2E-126 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 PIRSF PIRSF004486 1 309 5.8E-118 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 309 39.806 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CLM_1691 f7ead4d0f283128fdea1b0648a933346 309 Gene3D G3DSA:1.10.150.170 111 214 8.9E-111 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 CLM_0595 8f07c750ec28d85ec2db6e037fccfc11 317 SMART SM00448 2 115 3.2E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0595 8f07c750ec28d85ec2db6e037fccfc11 317 SUPERFAMILY SSF52172 3 127 4.55E-24 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0595 8f07c750ec28d85ec2db6e037fccfc11 317 Pfam PF00072 Response regulator receiver domain 4 115 3.6E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0595 8f07c750ec28d85ec2db6e037fccfc11 317 Gene3D G3DSA:3.40.50.2300 1 143 4.9E-24 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 Pfam PF13855 Leucine rich repeat 104 158 1.0E-6 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 CLM_3510 be738e2f123914176285162e43b37074 364 Pfam PF12799 Leucine Rich repeats (2 copies) 257 299 3.0E-8 T 13-10-2018 IPR025875 Leucine rich repeat 4 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 234 252 170.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 102 123 33.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 146 170 440.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 124 145 230.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 190 211 150.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 80 101 780.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 300 321 25.0 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 SMART SM00365 256 280 3.1 T 13-10-2018 CLM_3510 be738e2f123914176285162e43b37074 364 Pfam PF13516 Leucine Rich repeat 213 227 1.6 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 CLM_3510 be738e2f123914176285162e43b37074 364 Gene3D G3DSA:3.80.10.10 46 361 2.5E-64 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_3510 be738e2f123914176285162e43b37074 364 SUPERFAMILY SSF52058 77 330 6.69E-52 T 13-10-2018 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 Gene3D G3DSA:1.25.40.10 77 354 9.1E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 SUPERFAMILY SSF48452 223 344 1.52E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 Pfam PF00515 Tetratricopeptide repeat 246 274 6.6E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 Pfam PF13181 Tetratricopeptide repeat 282 309 0.076 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 SMART SM00028 278 311 1.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 SMART SM00028 312 344 22.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3520 fde8e2ed2fe3357c39967659f07c379b 358 SMART SM00028 244 277 1.2E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_2270 06b22fb4ccea1687c84f1f6671419311 299 Gene3D G3DSA:3.90.550.10 6 209 4.1E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2270 06b22fb4ccea1687c84f1f6671419311 299 SUPERFAMILY SSF53448 9 249 1.04E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2270 06b22fb4ccea1687c84f1f6671419311 299 Pfam PF00535 Glycosyl transferase family 2 9 164 1.4E-13 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 230 3.0E-59 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 SUPERFAMILY SSF81338 3 234 2.75E-71 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 PRINTS PR00783 Major intrinsic protein family signature 136 154 4.2E-46 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 PRINTS PR00783 Major intrinsic protein family signature 166 188 4.2E-46 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 PRINTS PR00783 Major intrinsic protein family signature 81 100 4.2E-46 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 PRINTS PR00783 Major intrinsic protein family signature 44 68 4.2E-46 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 PRINTS PR00783 Major intrinsic protein family signature 213 233 4.2E-46 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 PRINTS PR00783 Major intrinsic protein family signature 2 21 4.2E-46 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 Pfam PF00230 Major intrinsic protein 4 230 3.9E-47 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 ProSitePatterns PS00221 MIP family signature. 62 70 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 CLM_3151 5a8f4769bf9e8745297f8d172d35c198 234 Gene3D G3DSA:1.20.1080.10 1 234 8.9E-74 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CLM_2026 591a7ef019beaa7ff2c35f65cd1529cc 291 SUPERFAMILY SSF56349 2 280 6.47E-53 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_2026 591a7ef019beaa7ff2c35f65cd1529cc 291 Gene3D G3DSA:1.10.443.10 107 282 4.4E-53 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_2026 591a7ef019beaa7ff2c35f65cd1529cc 291 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 7 291 2.1E-103 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CLM_2026 591a7ef019beaa7ff2c35f65cd1529cc 291 Gene3D G3DSA:1.10.150.130 2 94 1.1E-21 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_2026 591a7ef019beaa7ff2c35f65cd1529cc 291 Pfam PF00589 Phage integrase family 108 275 4.6E-41 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_2026 591a7ef019beaa7ff2c35f65cd1529cc 291 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 85 2.6E-16 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 Gene3D G3DSA:1.10.10.60 58 112 3.5E-17 T 13-10-2018 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 9.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 9.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 SMART SM00342 21 104 1.5E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 Gene3D G3DSA:1.10.10.60 2 57 1.0E-15 T 13-10-2018 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 Pfam PF12833 Helix-turn-helix domain 28 105 3.1E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 SUPERFAMILY SSF46689 5 55 2.6E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 SUPERFAMILY SSF46689 57 108 6.27E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1029 efec418c7ed72fc4bc733a80a000cff4 248 Gene3D G3DSA:3.20.80.10 133 221 1.1E-5 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_0522 1d9336aa8e6c76c1d91358d75f394e01 216 Gene3D G3DSA:3.60.15.10 1 213 4.7E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0522 1d9336aa8e6c76c1d91358d75f394e01 216 SUPERFAMILY SSF56281 2 216 2.41E-24 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0522 1d9336aa8e6c76c1d91358d75f394e01 216 Pfam PF00753 Metallo-beta-lactamase superfamily 3 162 2.2E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0522 1d9336aa8e6c76c1d91358d75f394e01 216 SMART SM00849 2 196 1.1E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 SMART SM00347 22 122 5.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 Gene3D G3DSA:1.10.10.10 4 138 3.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 1.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 1.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 1.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 1.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 Pfam PF01047 MarR family 30 85 8.9E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_3186 5c8cbff044662e4e79daf2e302f63056 139 SUPERFAMILY SSF46785 27 137 2.46E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0680 b76a938d83d212bc52cde5b73652d80a 282 SUPERFAMILY SSF141571 59 277 7.85E-20 T 13-10-2018 CLM_0680 b76a938d83d212bc52cde5b73652d80a 282 Gene3D G3DSA:2.160.20.80 146 270 4.1E-14 T 13-10-2018 CLM_0680 b76a938d83d212bc52cde5b73652d80a 282 Pfam PF00805 Pentapeptide repeats (8 copies) 212 250 1.5E-10 T 13-10-2018 IPR001646 Pentapeptide repeat CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 Pfam PF05193 Peptidase M16 inactive domain 166 328 5.4E-30 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 Gene3D G3DSA:3.30.830.10 227 409 2.9E-27 T 13-10-2018 CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 SUPERFAMILY SSF63411 3 208 7.33E-56 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 Pfam PF00675 Insulinase (Peptidase family M16) 19 159 1.7E-33 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 Gene3D G3DSA:3.30.830.10 5 213 2.0E-67 T 13-10-2018 CLM_3587 9443f5e67f387338efbb44aef3fcd85f 409 SUPERFAMILY SSF63411 230 405 1.17E-28 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_2009 812fbe6cfbc42bab0966bff73952c14c 159 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 15 157 6.2E-52 T 13-10-2018 CLM_2009 812fbe6cfbc42bab0966bff73952c14c 159 Gene3D G3DSA:1.10.10.1590 5 74 2.2E-15 T 13-10-2018 CLM_2009 812fbe6cfbc42bab0966bff73952c14c 159 SUPERFAMILY SSF52833 9 157 8.95E-51 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_2009 812fbe6cfbc42bab0966bff73952c14c 159 Gene3D G3DSA:3.40.30.10 75 157 1.6E-30 T 13-10-2018 CLM_2009 812fbe6cfbc42bab0966bff73952c14c 159 PIRSF PIRSF000216 2 159 1.9E-55 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 Pfam PF00107 Zinc-binding dehydrogenase 183 309 7.0E-27 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 SMART SM00829 10 350 8.2E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 143 5.9E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 SUPERFAMILY SSF50129 1 182 4.25E-55 T 13-10-2018 IPR011032 GroES-like superfamily CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 Gene3D G3DSA:3.90.180.10 9 331 8.1E-106 T 13-10-2018 CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 Gene3D G3DSA:3.40.50.720 160 296 8.1E-106 T 13-10-2018 CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 SUPERFAMILY SSF51735 147 315 3.14E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2420 6941a2b11b408154dc033f7cdd84c41d 357 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CLM_0136 7ac271dd970ccedf3165a22b69091c13 242 Pfam PF02308 MgtC family 10 147 5.6E-39 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CLM_0136 7ac271dd970ccedf3165a22b69091c13 242 PRINTS PR01837 MgtC/SapB protein signature 74 96 3.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CLM_0136 7ac271dd970ccedf3165a22b69091c13 242 PRINTS PR01837 MgtC/SapB protein signature 13 32 3.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CLM_0136 7ac271dd970ccedf3165a22b69091c13 242 PRINTS PR01837 MgtC/SapB protein signature 32 50 3.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CLM_0136 7ac271dd970ccedf3165a22b69091c13 242 PRINTS PR01837 MgtC/SapB protein signature 101 125 3.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CLM_3222 a6cc42c88d9abc986399d3df3b134a38 276 SMART SM01092 180 274 0.0075 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal CLM_3222 a6cc42c88d9abc986399d3df3b134a38 276 Gene3D G3DSA:3.30.465.10 4 172 2.4E-30 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3222 a6cc42c88d9abc986399d3df3b134a38 276 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 169 2.7E-26 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CLM_3222 a6cc42c88d9abc986399d3df3b134a38 276 SUPERFAMILY SSF55447 179 274 5.02E-9 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CLM_3222 a6cc42c88d9abc986399d3df3b134a38 276 SUPERFAMILY SSF56176 1 169 1.06E-33 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_3259 8b0d8b23305c5b09f6361063d1b75dae 154 Gene3D G3DSA:3.40.50.960 1 154 1.6E-66 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3259 8b0d8b23305c5b09f6361063d1b75dae 154 SUPERFAMILY SSF52121 3 153 2.09E-64 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3259 8b0d8b23305c5b09f6361063d1b75dae 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 31.952 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3259 8b0d8b23305c5b09f6361063d1b75dae 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 13 149 6.3E-61 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3259 8b0d8b23305c5b09f6361063d1b75dae 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 12 151 7.5E-63 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3102 1c9ae6148d21bc6582d27155d5ec65a6 118 SUPERFAMILY SSF160214 38 118 3.66E-22 T 13-10-2018 IPR035924 FlaG-like superfamily CLM_3102 1c9ae6148d21bc6582d27155d5ec65a6 118 Gene3D G3DSA:3.30.160.170 15 114 1.7E-25 T 13-10-2018 IPR035924 FlaG-like superfamily CLM_3102 1c9ae6148d21bc6582d27155d5ec65a6 118 Pfam PF03646 FlaG protein 27 116 1.3E-20 T 13-10-2018 IPR005186 FlaG protein CLM_3463 af62b2275a07363e1fe831791e2eb360 149 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.308 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CLM_3463 af62b2275a07363e1fe831791e2eb360 149 Gene3D G3DSA:3.50.80.10 1 148 5.1E-59 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CLM_3463 af62b2275a07363e1fe831791e2eb360 149 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 146 3.2E-55 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CLM_3463 af62b2275a07363e1fe831791e2eb360 149 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 8.5E-56 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CLM_3463 af62b2275a07363e1fe831791e2eb360 149 SUPERFAMILY SSF69500 1 145 1.44E-55 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 SUPERFAMILY SSF63520 172 275 1.96E-25 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 Pfam PF03123 CAT RNA binding domain 1 54 9.0E-21 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 SMART SM01061 1 59 6.3E-27 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 SUPERFAMILY SSF63520 58 166 2.22E-29 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 Pfam PF00874 PRD domain 76 163 4.6E-23 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 Pfam PF00874 PRD domain 180 274 9.2E-20 T 13-10-2018 IPR011608 PRD domain GO:0006355 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 SUPERFAMILY SSF50151 1 52 8.5E-17 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 Gene3D G3DSA:1.10.1790.10 168 278 1.0E-33 T 13-10-2018 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 Gene3D G3DSA:1.10.1790.10 64 167 5.0E-35 T 13-10-2018 CLM_0767 97415e3eced1ceb64330176e98ae9e93 279 Gene3D G3DSA:2.30.24.10 1 54 1.4E-20 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 CLM_2568 f09a876d4d08b3742a0ad09d32198916 161 Pfam PF05565 Siphovirus Gp157 3 161 7.3E-53 T 13-10-2018 IPR008840 Siphovirus Gp157 CLM_3451 e78378e7ad99e808de2921e10aa044e1 495 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 158 358 3.5E-26 T 13-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT CLM_3451 e78378e7ad99e808de2921e10aa044e1 495 PIRSF PIRSF016636 1 495 1.1E-139 T 13-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CLM_3451 e78378e7ad99e808de2921e10aa044e1 495 PIRSF PIRSF500217 1 495 2.0E-143 T 13-10-2018 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 CLM_3069 c33899d35b353489d22ff3d3dec47d88 442 SUPERFAMILY SSF53756 3 436 1.03E-25 T 13-10-2018 CLM_3069 c33899d35b353489d22ff3d3dec47d88 442 Pfam PF13439 Glycosyltransferase Family 4 110 242 2.1E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_3069 c33899d35b353489d22ff3d3dec47d88 442 Gene3D G3DSA:3.40.50.2000 250 423 1.2E-11 T 13-10-2018 CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 Gene3D G3DSA:3.60.15.10 1 245 2.4E-102 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 Gene3D G3DSA:3.40.50.360 251 396 3.5E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 Pfam PF00258 Flavodoxin 254 369 5.0E-9 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 Pfam PF00753 Metallo-beta-lactamase superfamily 34 168 7.1E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 PIRSF PIRSF005243 1 396 5.4E-153 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 SUPERFAMILY SSF52218 249 394 2.79E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 SUPERFAMILY SSF56281 9 282 9.83E-59 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1285 ab1685517154fd7841c2f82ea49b4d7c 396 SMART SM00849 34 225 1.1E-30 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.2E-68 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 SUPERFAMILY SSF50249 2 124 3.0E-52 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PIRSF PIRSF002133 1 124 1.1E-53 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 Gene3D G3DSA:2.40.50.140 1 125 7.3E-63 T 13-10-2018 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 40.132 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PRINTS PR01034 Ribosomal protein S12 signature 110 122 4.9E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PRINTS PR01034 Ribosomal protein S12 signature 58 77 4.9E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PRINTS PR01034 Ribosomal protein S12 signature 77 94 4.9E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PRINTS PR01034 Ribosomal protein S12 signature 94 110 4.9E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PRINTS PR01034 Ribosomal protein S12 signature 42 57 4.9E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 PRINTS PR01034 Ribosomal protein S12 signature 27 42 4.9E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3953 9d7bdd35aae46b5a1046bec9f30f1289 125 Pfam PF00164 Ribosomal protein S12/S23 12 123 7.3E-42 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_1568 b1dbf90e2e4b239387af0959db73127f 165 Gene3D G3DSA:1.10.530.10 27 163 4.9E-11 T 13-10-2018 CLM_1568 b1dbf90e2e4b239387af0959db73127f 165 Pfam PF01464 Transglycosylase SLT domain 36 118 7.9E-5 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CLM_1568 b1dbf90e2e4b239387af0959db73127f 165 SUPERFAMILY SSF53955 31 119 5.22E-9 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CLM_1696 7c9f28eb44d3a545cfce29bf11872869 317 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 46 58 6.9E-6 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1696 7c9f28eb44d3a545cfce29bf11872869 317 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 3 317 21.538 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1696 7c9f28eb44d3a545cfce29bf11872869 317 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 16 316 2.6E-92 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1696 7c9f28eb44d3a545cfce29bf11872869 317 ProSitePatterns PS01347 MraY family signature 1. 46 58 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1696 7c9f28eb44d3a545cfce29bf11872869 317 ProSitePatterns PS01348 MraY family signature 2. 164 175 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1696 7c9f28eb44d3a545cfce29bf11872869 317 Pfam PF00953 Glycosyl transferase family 4 78 244 5.1E-32 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CLM_3818 9824f3dd3da6489b70c19666d067bfee 208 Gene3D G3DSA:3.40.50.360 1 194 3.0E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3818 9824f3dd3da6489b70c19666d067bfee 208 Pfam PF03358 NADPH-dependent FMN reductase 1 156 1.9E-33 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_3818 9824f3dd3da6489b70c19666d067bfee 208 SUPERFAMILY SSF52218 1 186 1.55E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0148 38ff72126a18d876038ecfece1da2a34 248 Pfam PF00731 AIR carboxylase 121 245 3.5E-16 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CLM_0148 38ff72126a18d876038ecfece1da2a34 248 SMART SM01001 119 248 6.3E-38 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CLM_0148 38ff72126a18d876038ecfece1da2a34 248 Gene3D G3DSA:3.40.50.7700 120 248 9.9E-36 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CLM_0148 38ff72126a18d876038ecfece1da2a34 248 SUPERFAMILY SSF52255 119 247 7.98E-30 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CLM_1132 42f94705dae34a64385225f7d01733af 376 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 357 4.9E-59 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_1132 42f94705dae34a64385225f7d01733af 376 PIRSF PIRSF000112 1 370 6.6E-84 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 CLM_1132 42f94705dae34a64385225f7d01733af 376 Gene3D G3DSA:3.40.50.1970 2 157 3.3E-35 T 13-10-2018 CLM_1132 42f94705dae34a64385225f7d01733af 376 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 148 176 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_1132 42f94705dae34a64385225f7d01733af 376 Gene3D G3DSA:1.20.1090.10 158 376 3.0E-81 T 13-10-2018 CLM_1132 42f94705dae34a64385225f7d01733af 376 SUPERFAMILY SSF56796 3 366 3.27E-77 T 13-10-2018 CLM_0593 d3f5cbe908e88dbbdf87fa75464b2b62 164 SUPERFAMILY SSF52833 3 158 2.88E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_0593 d3f5cbe908e88dbbdf87fa75464b2b62 164 Pfam PF00578 AhpC/TSA family 19 140 6.3E-20 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CLM_0593 d3f5cbe908e88dbbdf87fa75464b2b62 164 Hamap MF_00269 Thiol peroxidase [tpx]. 2 161 34.874 T 13-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 CLM_0593 d3f5cbe908e88dbbdf87fa75464b2b62 164 Gene3D G3DSA:3.40.30.10 1 163 5.8E-49 T 13-10-2018 CLM_0593 d3f5cbe908e88dbbdf87fa75464b2b62 164 ProSitePatterns PS01265 Tpx family signature. 81 92 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 CLM_0967 fc746b2a73d5b0c67c4a7d564fad898c 82 Pfam PF07875 Coat F domain 2 63 2.5E-21 T 13-10-2018 IPR012851 Spore coat protein CotF-like CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 Gene3D G3DSA:1.20.1250.20 1 237 2.0E-46 T 13-10-2018 CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 Gene3D G3DSA:1.20.1250.20 238 464 8.6E-54 T 13-10-2018 CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 237 458 2.1E-45 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 147 159 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 Pfam PF00854 POT family 85 202 2.2E-14 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 Pfam PF00854 POT family 237 426 1.1E-31 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_2473 cc3f8de24aae353cc6d71b8e73137112 465 SUPERFAMILY SSF103473 12 453 1.83E-37 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1921 bc719853543694e03f4bce82a1a1bdd9 187 SUPERFAMILY SSF48498 76 182 2.92E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_1921 bc719853543694e03f4bce82a1a1bdd9 187 Gene3D G3DSA:1.10.10.60 1 45 2.3E-11 T 13-10-2018 CLM_1921 bc719853543694e03f4bce82a1a1bdd9 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 49 1.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_1921 bc719853543694e03f4bce82a1a1bdd9 187 Gene3D G3DSA:1.10.357.10 46 186 1.6E-10 T 13-10-2018 CLM_1921 bc719853543694e03f4bce82a1a1bdd9 187 SUPERFAMILY SSF46689 2 57 2.54E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0074 560a4de6c9faabad555d5f895b6405d3 52 Pfam PF04914 DltD protein 2 42 3.0E-11 T 13-10-2018 IPR006998 DltD CLM_2121 c21a65fd3de482f1dca631414c78a8db 146 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 1.1E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CLM_2121 c21a65fd3de482f1dca631414c78a8db 146 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 24 8.8E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 3 153 30.602 T 13-10-2018 IPR033747 Class I PurE CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 Pfam PF00731 AIR carboxylase 2 147 6.2E-62 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 PIRSF PIRSF001338 1 158 2.4E-64 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 SUPERFAMILY SSF52255 1 156 5.1E-60 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 Gene3D G3DSA:3.40.50.7700 1 158 1.0E-63 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 3 155 1.1E-58 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CLM_3275 ae56c2dbe1b396a73a632b48de9012c6 159 SMART SM01001 1 149 1.9E-85 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CLM_1077 34e71594438bb81ffbb932ff0429b019 254 Pfam PF00753 Metallo-beta-lactamase superfamily 24 212 6.5E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1077 34e71594438bb81ffbb932ff0429b019 254 SMART SM00849 25 212 8.1E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_1077 34e71594438bb81ffbb932ff0429b019 254 SUPERFAMILY SSF56281 22 214 1.54E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_1077 34e71594438bb81ffbb932ff0429b019 254 Gene3D G3DSA:3.60.15.10 1 232 1.8E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3707 3164d75b5f271614a21fca4497d47956 238 Gene3D G3DSA:3.30.70.1560 130 214 1.5E-56 T 13-10-2018 CLM_3707 3164d75b5f271614a21fca4497d47956 238 SMART SM00363 2 62 6.2E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3707 3164d75b5f271614a21fca4497d47956 238 Gene3D G3DSA:3.30.70.580 63 232 1.5E-56 T 13-10-2018 CLM_3707 3164d75b5f271614a21fca4497d47956 238 Pfam PF00849 RNA pseudouridylate synthase 63 196 1.8E-19 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3707 3164d75b5f271614a21fca4497d47956 238 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 101 115 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CLM_3707 3164d75b5f271614a21fca4497d47956 238 SUPERFAMILY SSF55174 3 59 4.71E-12 T 13-10-2018 CLM_3707 3164d75b5f271614a21fca4497d47956 238 Gene3D G3DSA:3.10.290.10 2 59 1.2E-17 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_3707 3164d75b5f271614a21fca4497d47956 238 SUPERFAMILY SSF55120 48 237 5.22E-43 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3707 3164d75b5f271614a21fca4497d47956 238 Pfam PF01479 S4 domain 2 45 4.6E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3707 3164d75b5f271614a21fca4497d47956 238 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 229 2.6E-47 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 SUPERFAMILY SSF58104 232 569 3.14E-59 T 13-10-2018 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 185 2.1E-47 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_3191 5ee04cba99c772863526d4e03e98f602 570 SMART SM00304 212 264 9.0E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 SMART SM00304 503 556 70.0 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 344 520 1.7E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 SMART SM00283 293 569 4.8E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 Pfam PF00672 HAMP domain 212 259 2.8E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 Gene3D G3DSA:1.10.287.950 267 569 6.7E-60 T 13-10-2018 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 Gene3D G3DSA:1.20.1480.50 170 266 1.3E-7 T 13-10-2018 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 1.1E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 418 1.1E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_3191 5ee04cba99c772863526d4e03e98f602 570 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 1.1E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_0650 f784edba8fe46b1264a591ce1a0bf541 302 Gene3D G3DSA:3.40.50.1820 53 301 2.8E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0650 f784edba8fe46b1264a591ce1a0bf541 302 SUPERFAMILY SSF53474 51 299 1.21E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0650 f784edba8fe46b1264a591ce1a0bf541 302 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 97 189 2.9E-8 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 Gene3D G3DSA:3.90.1570.50 103 268 2.1E-8 T 13-10-2018 CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 SMART SM00487 280 510 5.2E-13 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 Pfam PF04851 Type III restriction enzyme, res subunit 284 446 3.9E-12 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 Gene3D G3DSA:3.40.50.300 638 745 2.1E-21 T 13-10-2018 CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 8 210 8.8E-12 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 SUPERFAMILY SSF52540 251 533 3.15E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2294 ade2eef4c03d8267ef9a815a1c4999df 1002 Gene3D G3DSA:3.40.50.300 284 443 1.6E-25 T 13-10-2018 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 SMART SM00387 345 457 1.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 SMART SM00388 235 300 6.8E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 296 1.4E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 455 8.1E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 SUPERFAMILY SSF55874 305 455 5.24E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 Gene3D G3DSA:3.30.565.10 304 456 1.3E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 Gene3D G3DSA:1.10.287.130 206 297 2.0E-15 T 13-10-2018 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 PRINTS PR01780 Lantibiotic regulatory protein signature 244 260 9.2E-10 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 PRINTS PR01780 Lantibiotic regulatory protein signature 207 221 9.2E-10 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 PRINTS PR01780 Lantibiotic regulatory protein signature 384 400 9.2E-10 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 PRINTS PR01780 Lantibiotic regulatory protein signature 341 356 9.2E-10 T 13-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 CLM_1827 1bd0d3af2751452fa60217d80cab46a3 459 SUPERFAMILY SSF47384 220 296 5.69E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0558 154f3d2084e0d54136fdecce2ccc6435 283 Gene3D G3DSA:3.30.70.120 193 268 1.4E-20 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_0558 154f3d2084e0d54136fdecce2ccc6435 283 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 11 215 3.8E-57 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CLM_0558 154f3d2084e0d54136fdecce2ccc6435 283 PIRSF PIRSF006483 1 283 2.1E-85 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CLM_0558 154f3d2084e0d54136fdecce2ccc6435 283 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 222 275 1.4E-17 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 Pfam PF17384 RimP C-terminal SH3 domain 88 152 2.7E-10 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 SUPERFAMILY SSF75420 4 85 2.22E-26 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 153 22.664 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 Pfam PF02576 RimP N-terminal domain 14 85 8.9E-29 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 Gene3D G3DSA:3.30.300.70 2 82 8.0E-29 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 Gene3D G3DSA:2.30.30.180 90 149 4.6E-8 T 13-10-2018 CLM_2715 662b6cb3e77d6403a2a46fc12bc3b0f9 153 SUPERFAMILY SSF74942 86 149 1.02E-11 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CLM_0789 415703758bcc8c2589331e9e37be4619 312 SUPERFAMILY SSF51395 1 293 2.93E-42 T 13-10-2018 CLM_0789 415703758bcc8c2589331e9e37be4619 312 Pfam PF01207 Dihydrouridine synthase (Dus) 5 299 4.7E-33 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CLM_0789 415703758bcc8c2589331e9e37be4619 312 PIRSF PIRSF006621 1 312 5.1E-59 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CLM_0789 415703758bcc8c2589331e9e37be4619 312 Gene3D G3DSA:3.20.20.70 1 236 2.4E-57 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0789 415703758bcc8c2589331e9e37be4619 312 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 88 106 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CLM_3724 3443d163b41e8ba81030e1267a267f4e 264 Gene3D G3DSA:3.30.420.40 98 238 7.6E-84 T 13-10-2018 CLM_3724 3443d163b41e8ba81030e1267a267f4e 264 Gene3D G3DSA:3.30.420.40 7 255 7.6E-84 T 13-10-2018 CLM_3724 3443d163b41e8ba81030e1267a267f4e 264 SUPERFAMILY SSF53067 5 258 1.3E-39 T 13-10-2018 CLM_3724 3443d163b41e8ba81030e1267a267f4e 264 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 5 253 2.6E-80 T 13-10-2018 IPR008275 CoA enzyme activase CLM_3724 3443d163b41e8ba81030e1267a267f4e 264 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 255 3.2E-64 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_1806 ab352d47906219238eee388dec1a57a3 422 Pfam PF13393 Histidyl-tRNA synthetase 11 322 3.7E-73 T 13-10-2018 CLM_1806 ab352d47906219238eee388dec1a57a3 422 SUPERFAMILY SSF55681 7 330 5.43E-58 T 13-10-2018 CLM_1806 ab352d47906219238eee388dec1a57a3 422 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 13 327 2.3E-106 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 CLM_1806 ab352d47906219238eee388dec1a57a3 422 Gene3D G3DSA:3.30.930.10 2 327 3.3E-86 T 13-10-2018 CLM_1806 ab352d47906219238eee388dec1a57a3 422 PIRSF PIRSF001549 4 421 3.4E-78 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CLM_1806 ab352d47906219238eee388dec1a57a3 422 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 18 380 30.407 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 CLM_1673 704f6a16f6bd349d5dc865e136def700 105 Pfam PF10844 Protein of unknown function (DUF2577) 12 104 4.3E-9 T 13-10-2018 IPR022555 Protein of unknown function, DUF2577 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 Gene3D G3DSA:1.20.1250.20 237 438 3.5E-54 T 13-10-2018 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 ProSitePatterns PS00942 glpT family of transporters signature. 150 166 - T 13-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 Pfam PF07690 Major Facilitator Superfamily 36 391 1.7E-51 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 4 434 6.7E-198 T 13-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 412 8.0E-147 T 13-10-2018 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 Gene3D G3DSA:1.20.1250.20 19 223 6.4E-56 T 13-10-2018 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 PIRSF PIRSF002808 6 444 1.8E-162 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CLM_1231 ee4ecc737136a584ec3ba45032bcb091 445 SUPERFAMILY SSF103473 10 436 4.05E-83 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1114 f44794fa59c5d8673faed238105f079d 295 Gene3D G3DSA:3.40.50.300 1 236 6.5E-64 T 13-10-2018 CLM_1114 f44794fa59c5d8673faed238105f079d 295 SUPERFAMILY SSF52540 4 218 3.01E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1114 f44794fa59c5d8673faed238105f079d 295 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1114 f44794fa59c5d8673faed238105f079d 295 Pfam PF00005 ABC transporter 21 162 5.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1114 f44794fa59c5d8673faed238105f079d 295 SMART SM00382 27 209 2.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2161 b3c680ef7c97bfec3f2504604c5a250f 230 Pfam PF00005 ABC transporter 23 157 1.0E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2161 b3c680ef7c97bfec3f2504604c5a250f 230 Gene3D G3DSA:3.40.50.300 1 230 5.4E-62 T 13-10-2018 CLM_2161 b3c680ef7c97bfec3f2504604c5a250f 230 SUPERFAMILY SSF52540 3 221 2.47E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2161 b3c680ef7c97bfec3f2504604c5a250f 230 SMART SM00382 27 205 8.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3722 76b18eac5cd993ce92cfd7c67dc679f0 374 Gene3D G3DSA:3.40.50.11900 233 374 1.1E-48 T 13-10-2018 CLM_3722 76b18eac5cd993ce92cfd7c67dc679f0 374 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 40 374 4.8E-67 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3722 76b18eac5cd993ce92cfd7c67dc679f0 374 Gene3D G3DSA:1.20.1270.370 11 221 1.8E-77 T 13-10-2018 CLM_3722 76b18eac5cd993ce92cfd7c67dc679f0 374 Gene3D G3DSA:3.40.50.11890 31 156 1.8E-77 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 SMART SM00450 454 549 1.7E-23 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.0E-22 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 2.0E-22 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.0E-22 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 2.0E-22 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 2.0E-22 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 Pfam PF00581 Rhodanese-like domain 464 541 2.2E-14 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1821 2775140b158636619065639c4e10f60e 566 SUPERFAMILY SSF52821 432 543 1.7E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1821 2775140b158636619065639c4e10f60e 566 Gene3D G3DSA:3.40.250.10 452 545 2.8E-25 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1821 2775140b158636619065639c4e10f60e 566 SUPERFAMILY SSF55424 322 447 3.78E-30 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CLM_1821 2775140b158636619065639c4e10f60e 566 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 330 431 2.1E-15 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CLM_1821 2775140b158636619065639c4e10f60e 566 Gene3D G3DSA:3.50.50.60 4 339 9.9E-170 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1821 2775140b158636619065639c4e10f60e 566 Gene3D G3DSA:3.50.50.60 116 441 9.9E-170 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1821 2775140b158636619065639c4e10f60e 566 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 305 9.9E-63 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1821 2775140b158636619065639c4e10f60e 566 SUPERFAMILY SSF51905 2 316 2.44E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 3.3E-15 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 3.3E-15 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.3E-15 T 13-10-2018 CLM_1821 2775140b158636619065639c4e10f60e 566 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 3.3E-15 T 13-10-2018 CLM_2307 5c1bdc4a5a0a3ad3de9fccf8b5adb8dd 107 SUPERFAMILY SSF46785 15 104 1.49E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2307 5c1bdc4a5a0a3ad3de9fccf8b5adb8dd 107 Gene3D G3DSA:1.10.10.10 3 106 4.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2307 5c1bdc4a5a0a3ad3de9fccf8b5adb8dd 107 Pfam PF03551 Transcriptional regulator PadR-like family 20 83 7.4E-12 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal CLM_0607 122514f019db5a00eb28eea295accb73 668 PIRSF PIRSF000906 11 657 0.0 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CLM_0607 122514f019db5a00eb28eea295accb73 668 Pfam PF06874 Firmicute fructose-1,6-bisphosphatase 17 655 0.0 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CLM_0607 122514f019db5a00eb28eea295accb73 668 SUPERFAMILY SSF56300 195 250 2.46E-5 T 13-10-2018 CLM_0607 122514f019db5a00eb28eea295accb73 668 Hamap MF_01854 Fructose-1,6-bisphosphatase class 3 [fbp]. 15 656 40.66 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CLM_2374 ab211ead474201900ed00a10f949d392 296 Gene3D G3DSA:1.10.10.60 58 113 2.1E-13 T 13-10-2018 CLM_2374 ab211ead474201900ed00a10f949d392 296 SMART SM00342 21 103 5.4E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2374 ab211ead474201900ed00a10f949d392 296 Gene3D G3DSA:3.20.80.10 124 294 8.4E-36 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2374 ab211ead474201900ed00a10f949d392 296 SUPERFAMILY SSF55136 127 293 1.57E-15 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2374 ab211ead474201900ed00a10f949d392 296 Pfam PF12833 Helix-turn-helix domain 29 104 2.9E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2374 ab211ead474201900ed00a10f949d392 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 99 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_2374 ab211ead474201900ed00a10f949d392 296 Gene3D G3DSA:1.10.10.60 2 57 9.9E-18 T 13-10-2018 CLM_2374 ab211ead474201900ed00a10f949d392 296 Pfam PF14526 Integron-associated effector binding protein 127 291 1.6E-23 T 13-10-2018 IPR029441 Integron-associated effector binding protein CLM_2374 ab211ead474201900ed00a10f949d392 296 SUPERFAMILY SSF46689 62 107 4.26E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2374 ab211ead474201900ed00a10f949d392 296 SMART SM00871 123 292 2.3E-28 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_2374 ab211ead474201900ed00a10f949d392 296 SUPERFAMILY SSF46689 7 55 1.25E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2374 ab211ead474201900ed00a10f949d392 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 2.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_2374 ab211ead474201900ed00a10f949d392 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 2.6E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1291 1ff66aa0da03026c07bf4fd83b933cb0 103 SMART SM00450 7 103 2.3E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1291 1ff66aa0da03026c07bf4fd83b933cb0 103 Pfam PF00581 Rhodanese-like domain 7 97 7.2E-18 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1291 1ff66aa0da03026c07bf4fd83b933cb0 103 Gene3D G3DSA:3.40.250.10 2 102 1.1E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1291 1ff66aa0da03026c07bf4fd83b933cb0 103 SUPERFAMILY SSF52821 3 97 4.45E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_3556 e6365a57d327dd3c9621da152b072fac 296 PIRSF PIRSF005261 1 292 1.1E-83 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CLM_3556 e6365a57d327dd3c9621da152b072fac 296 Gene3D G3DSA:3.90.1280.10 238 295 3.3E-18 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CLM_3556 e6365a57d327dd3c9621da152b072fac 296 SUPERFAMILY SSF64397 2 242 3.53E-73 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CLM_3556 e6365a57d327dd3c9621da152b072fac 296 SUPERFAMILY SSF118352 234 291 1.7E-16 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CLM_3556 e6365a57d327dd3c9621da152b072fac 296 Gene3D G3DSA:3.55.30.10 2 236 7.5E-84 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CLM_3556 e6365a57d327dd3c9621da152b072fac 296 Pfam PF01430 Hsp33 protein 3 281 2.7E-83 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CLM_3556 e6365a57d327dd3c9621da152b072fac 296 Hamap MF_00117 33 kDa chaperonin [hslO]. 2 292 38.253 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CLM_3978 cdd27e44bea245b176d54775e660d993 353 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 24 136 7.1E-26 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLM_3978 cdd27e44bea245b176d54775e660d993 353 Gene3D G3DSA:1.20.1260.110 142 286 1.7E-44 T 13-10-2018 IPR038331 DisA, linker domain superfamily CLM_3978 cdd27e44bea245b176d54775e660d993 353 SUPERFAMILY SSF47781 257 343 4.13E-13 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3978 cdd27e44bea245b176d54775e660d993 353 Gene3D G3DSA:1.10.150.20 287 349 2.3E-24 T 13-10-2018 CLM_3978 cdd27e44bea245b176d54775e660d993 353 Hamap MF_01438 DNA integrity scanning protein DisA [disA]. 3 351 44.843 T 13-10-2018 IPR023763 DNA integrity scanning protein, DisA CLM_3978 cdd27e44bea245b176d54775e660d993 353 Gene3D G3DSA:3.40.1700.10 5 141 9.3E-56 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLM_3978 cdd27e44bea245b176d54775e660d993 353 SUPERFAMILY SSF143597 15 141 1.44E-30 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLM_3978 cdd27e44bea245b176d54775e660d993 353 Pfam PF10635 DisA bacterial checkpoint controller linker region 141 275 4.8E-53 T 13-10-2018 IPR018906 DNA integrity scanning, DisA, linker region CLM_0737 64023e782544e4e73533917fa51714a8 407 PIRSF PIRSF001235 2 407 3.4E-127 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 CLM_0737 64023e782544e4e73533917fa51714a8 407 SUPERFAMILY SSF55031 212 319 1.31E-21 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_0737 64023e782544e4e73533917fa51714a8 407 SUPERFAMILY SSF53187 2 405 1.63E-81 T 13-10-2018 CLM_0737 64023e782544e4e73533917fa51714a8 407 Gene3D G3DSA:3.30.70.360 212 323 8.6E-129 T 13-10-2018 CLM_0737 64023e782544e4e73533917fa51714a8 407 Gene3D G3DSA:3.40.630.10 16 399 8.6E-129 T 13-10-2018 CLM_0737 64023e782544e4e73533917fa51714a8 407 Pfam PF07687 Peptidase dimerisation domain 211 308 8.9E-6 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_0737 64023e782544e4e73533917fa51714a8 407 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 7 403 7.3E-120 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 CLM_0737 64023e782544e4e73533917fa51714a8 407 Pfam PF01546 Peptidase family M20/M25/M40 78 402 4.6E-27 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 Hamap MF_01916 Cardiolipin synthase. 7 476 42.492 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 3 476 2.3E-146 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 SUPERFAMILY SSF56024 257 460 6.06E-48 T 13-10-2018 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 PIRSF PIRSF000850 288 363 0.0074 T 13-10-2018 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 PIRSF PIRSF000850 366 450 0.16 T 13-10-2018 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 PIRSF PIRSF000850 81 217 26.0 T 13-10-2018 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 SMART SM00155 389 416 5.7E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 SMART SM00155 206 233 1.1E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 Pfam PF13396 Phospholipase_D-nuclease N-terminal 14 55 2.4E-8 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal CLM_3038 fbf3802727f637b876caa04641acb3d4 476 Pfam PF13091 PLD-like domain 317 442 8.2E-30 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 Pfam PF13091 PLD-like domain 121 252 5.4E-13 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 SUPERFAMILY SSF56024 77 305 5.16E-49 T 13-10-2018 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 Gene3D G3DSA:3.30.870.10 104 282 8.2E-36 T 13-10-2018 CLM_3038 fbf3802727f637b876caa04641acb3d4 476 Gene3D G3DSA:3.30.870.10 283 475 2.9E-34 T 13-10-2018 CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 PIRSF PIRSF004749 1 165 3.6E-28 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 Hamap MF_00163 Peptide deformylase [def]. 2 166 19.531 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 Pfam PF01327 Polypeptide deformylase 4 155 1.0E-36 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 Gene3D G3DSA:3.90.45.10 1 165 1.4E-36 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 PRINTS PR01576 Peptide deformylase signature 39 68 8.1E-12 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 PRINTS PR01576 Peptide deformylase signature 124 153 8.1E-12 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 PRINTS PR01576 Peptide deformylase signature 93 104 8.1E-12 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 PRINTS PR01576 Peptide deformylase signature 105 123 8.1E-12 T 13-10-2018 IPR023635 Peptide deformylase CLM_1010 0a052d031b3f135540a57bf66194ba9b 166 SUPERFAMILY SSF56420 4 162 1.44E-40 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_3643 37889f878f2589f1acff6074f82bf618 194 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 13-10-2018 IPR018215 ClpP, Ser active site CLM_3643 37889f878f2589f1acff6074f82bf618 194 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 9.8E-55 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_3643 37889f878f2589f1acff6074f82bf618 194 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 9.8E-55 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_3643 37889f878f2589f1acff6074f82bf618 194 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 9.8E-55 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_3643 37889f878f2589f1acff6074f82bf618 194 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 9.8E-55 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_3643 37889f878f2589f1acff6074f82bf618 194 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 9.8E-55 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_3643 37889f878f2589f1acff6074f82bf618 194 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 192 6.7E-107 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_3643 37889f878f2589f1acff6074f82bf618 194 Pfam PF00574 Clp protease 13 192 6.4E-89 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_3643 37889f878f2589f1acff6074f82bf618 194 Gene3D G3DSA:3.90.226.10 1 194 1.0E-85 T 13-10-2018 CLM_3643 37889f878f2589f1acff6074f82bf618 194 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 13-10-2018 IPR033135 ClpP, histidine active site CLM_3643 37889f878f2589f1acff6074f82bf618 194 SUPERFAMILY SSF52096 10 192 1.44E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_3643 37889f878f2589f1acff6074f82bf618 194 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 44.102 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CLM_0267 fda6d178b6dff8d66bc164f0c138d1e3 155 Gene3D G3DSA:3.40.1280.10 1 155 8.5E-65 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_0267 fda6d178b6dff8d66bc164f0c138d1e3 155 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 3 152 35.534 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CLM_0267 fda6d178b6dff8d66bc164f0c138d1e3 155 PIRSF PIRSF029256 2 155 2.0E-65 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CLM_0267 fda6d178b6dff8d66bc164f0c138d1e3 155 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 3 154 1.4E-57 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CLM_0267 fda6d178b6dff8d66bc164f0c138d1e3 155 SUPERFAMILY SSF75217 3 154 1.9E-42 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CLM_0267 fda6d178b6dff8d66bc164f0c138d1e3 155 Pfam PF00588 SpoU rRNA Methylase family 3 143 7.7E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CLM_1377 4e9c3953cb93111f5f9d25b43c63caab 230 Pfam PF04893 Yip1 domain 22 217 4.7E-16 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 CLM_2014 dcacd06563d018963841cd5d149021d0 170 Pfam PF11167 Protein of unknown function (DUF2953) 91 135 4.0E-11 T 13-10-2018 IPR021338 Protein of unknown function DUF2953 CLM_1513 00ec05a267550a58cb572b4e1e1aa9c8 399 ProSitePatterns PS00216 Sugar transport proteins signature 1. 65 81 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CLM_1513 00ec05a267550a58cb572b4e1e1aa9c8 399 Gene3D G3DSA:1.20.1250.20 6 386 2.3E-45 T 13-10-2018 CLM_1513 00ec05a267550a58cb572b4e1e1aa9c8 399 SUPERFAMILY SSF103473 1 386 4.45E-52 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1513 00ec05a267550a58cb572b4e1e1aa9c8 399 Pfam PF07690 Major Facilitator Superfamily 20 246 9.0E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_1320 f77b6320c5847855c83ec4daa114fed2 307 Gene3D G3DSA:3.40.1790.10 2 307 2.9E-144 T 13-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 CLM_1320 f77b6320c5847855c83ec4daa114fed2 307 Pfam PF04227 Indigoidine synthase A like protein 11 301 4.5E-139 T 13-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 CLM_1320 f77b6320c5847855c83ec4daa114fed2 307 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 10 304 44.655 T 13-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 CLM_1320 f77b6320c5847855c83ec4daa114fed2 307 SUPERFAMILY SSF110581 4 303 2.75E-119 T 13-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 SUPERFAMILY SSF52540 3 240 2.86E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 Pfam PF08402 TOBE domain 248 309 5.9E-6 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 SMART SM00382 27 210 1.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 Pfam PF00005 ABC transporter 18 160 1.7E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 SUPERFAMILY SSF50331 243 309 3.66E-7 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CLM_1307 3fe1000adf20e70826a6f2ebcc362b58 311 Gene3D G3DSA:3.40.50.300 1 237 2.4E-76 T 13-10-2018 CLM_3346 8ca29ee2d0f871719d50defb1ba78325 98 TIGRFAM TIGR02856 spore_yqfC: sporulation protein YqfC 9 91 2.7E-34 T 13-10-2018 IPR022477 Sporulation protein YqfC CLM_3346 8ca29ee2d0f871719d50defb1ba78325 98 Pfam PF07873 YabP family 27 90 2.0E-14 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 225 402 1.2E-37 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 42.749 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 110 7.7E-30 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 Gene3D G3DSA:3.30.930.10 108 426 2.1E-126 T 13-10-2018 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 Gene3D G3DSA:1.10.287.40 1 107 4.4E-27 T 13-10-2018 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 5.0E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 5.0E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 5.0E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 5.0E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 5.0E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 SUPERFAMILY SSF46589 1 115 1.1E-27 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 SUPERFAMILY SSF55681 119 424 7.47E-104 T 13-10-2018 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 8.6E-174 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_0022 6bf1a7c58c8a60b8c1089b4e82dc8486 426 PIRSF PIRSF001529 1 426 2.8E-184 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CLM_1765 bf5b0639b970fec0fc53993995c15dc0 121 SUPERFAMILY SSF54593 4 120 1.18E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_1765 bf5b0639b970fec0fc53993995c15dc0 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 117 1.5E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_1765 bf5b0639b970fec0fc53993995c15dc0 121 Gene3D G3DSA:3.10.180.10 5 118 3.0E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0756 6ca158a67d3c0825dae68fcff0985a10 73 Pfam PF11796 Protein of unknown function N-terminus (DUF3323) 1 45 4.1E-7 T 13-10-2018 IPR024466 Conserved hypothetical protein CHP02679, N terminus CLM_3393 f1336d74e3693de0a25d4e8db2857111 265 Gene3D G3DSA:3.40.50.300 1 254 1.9E-65 T 13-10-2018 CLM_3393 f1336d74e3693de0a25d4e8db2857111 265 PIRSF PIRSF003092 1 265 2.2E-85 T 13-10-2018 IPR025501 ATP binding protein MinD CLM_3393 f1336d74e3693de0a25d4e8db2857111 265 SUPERFAMILY SSF52540 1 261 4.83E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3393 f1336d74e3693de0a25d4e8db2857111 265 Pfam PF13614 AAA domain 3 158 1.9E-24 T 13-10-2018 IPR025669 AAA domain CLM_3393 f1336d74e3693de0a25d4e8db2857111 265 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 262 2.5E-120 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 Pfam PF04963 Sigma-54 factor, core binding domain 96 282 7.0E-49 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 Pfam PF04552 Sigma-54, DNA binding domain 296 456 2.0E-56 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 Gene3D G3DSA:1.10.10.1330 100 232 1.3E-23 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 Gene3D G3DSA:1.10.10.60 398 455 8.1E-24 T 13-10-2018 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 343 362 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 PRINTS PR00045 Sigma-54 factor signature 167 184 5.0E-22 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 PRINTS PR00045 Sigma-54 factor signature 431 449 5.0E-22 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 PRINTS PR00045 Sigma-54 factor signature 355 367 5.0E-22 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 PRINTS PR00045 Sigma-54 factor signature 371 382 5.0E-22 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 436 443 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 50 1.8E-17 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 PIRSF PIRSF000774 1 457 5.1E-140 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_0274 78ca5fb43e215ab1707166cd0876683f 457 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 455 3.6E-132 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CLM_2242 44b95125062ded8c2bf55a5560b4a434 238 SUPERFAMILY SSF53474 10 230 1.45E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2242 44b95125062ded8c2bf55a5560b4a434 238 Gene3D G3DSA:3.40.50.1820 9 237 2.9E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0315 ddaf36f7b7d94995fe33601b2bd77feb 333 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 5 332 2.8E-155 T 13-10-2018 IPR010894 Stage V sporulation AD CLM_0315 ddaf36f7b7d94995fe33601b2bd77feb 333 Gene3D G3DSA:3.40.47.40 1 333 1.7E-149 T 13-10-2018 IPR038369 Stage V sporulation AD superfamily CLM_0315 ddaf36f7b7d94995fe33601b2bd77feb 333 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 4 332 3.2E-158 T 13-10-2018 IPR010894 Stage V sporulation AD CLM_0315 ddaf36f7b7d94995fe33601b2bd77feb 333 PIRSF PIRSF011570 1 333 3.5E-160 T 13-10-2018 IPR010894 Stage V sporulation AD CLM_0315 ddaf36f7b7d94995fe33601b2bd77feb 333 SUPERFAMILY SSF53901 25 309 9.52E-16 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_2990 4976dcb5a2a0f8d79968868faca420ae 105 Gene3D G3DSA:3.40.50.10580 4 105 3.4E-30 T 13-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2990 4976dcb5a2a0f8d79968868faca420ae 105 Hamap MF_00312 V-type ATP synthase subunit F [atpF]. 5 105 16.907 T 13-10-2018 IPR022944 ATPase, V1 complex, subunit F, bacterial/archaeal CLM_2990 4976dcb5a2a0f8d79968868faca420ae 105 Pfam PF01990 ATP synthase (F/14-kDa) subunit 7 96 1.1E-23 T 13-10-2018 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2990 4976dcb5a2a0f8d79968868faca420ae 105 SUPERFAMILY SSF159468 7 104 4.97E-26 T 13-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_0676 a27e15c0e76a6b71d37a136e5806f262 67 ProDom PD019268 UVIB BACTERIOCIN BHLA PLASMID ANTIBIOTIC HOLIN-LIKE PRECURSOR ANTIMICROBIAL SIGNAL PROPHAGE-DERIVED 1 60 5.0E-16 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_0676 a27e15c0e76a6b71d37a136e5806f262 67 Pfam PF10960 BhlA holin family 1 56 2.0E-15 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 128 273 1.2E-54 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 3 434 2.4E-173 T 13-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Gene3D G3DSA:3.10.20.600 284 359 8.3E-6 T 13-10-2018 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Pfam PF10531 SLBB domain 286 334 5.8E-15 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Pfam PF13375 RnfC Barrel sandwich hybrid domain 5 104 2.0E-39 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Gene3D G3DSA:1.10.1060.10 360 434 6.6E-10 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 405 416 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 SUPERFAMILY SSF46548 324 435 2.75E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 366 377 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Pfam PF13187 4Fe-4S dicluster domain 366 418 2.3E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 439 156.98 T 13-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 SUPERFAMILY SSF142019 87 293 1.57E-63 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_0436 3eb0a3868d66dc87b4f20c70b58f146e 439 Gene3D G3DSA:3.40.50.11540 133 279 8.1E-13 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_1727 1165794f1db711ab32849f0c602dcecf 350 Gene3D G3DSA:3.20.20.210 1 343 2.9E-85 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1727 1165794f1db711ab32849f0c602dcecf 350 SUPERFAMILY SSF51726 5 347 1.41E-62 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1727 1165794f1db711ab32849f0c602dcecf 350 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 7 343 4.7E-84 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 SMART SM00471 389 524 5.0E-8 T 13-10-2018 IPR003607 HD/PDEase domain CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 Pfam PF00990 Diguanylate cyclase, GGDEF domain 195 352 1.7E-47 T 13-10-2018 IPR000160 GGDEF domain CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 SUPERFAMILY SSF109604 379 553 2.8E-37 T 13-10-2018 CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 Gene3D G3DSA:3.30.70.270 182 359 3.1E-54 T 13-10-2018 CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 Gene3D G3DSA:1.10.3210.10 375 563 5.6E-67 T 13-10-2018 CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 190 356 1.0E-55 T 13-10-2018 IPR000160 GGDEF domain CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 SUPERFAMILY SSF55073 199 358 3.06E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 Pfam PF01966 HD domain 393 515 4.7E-19 T 13-10-2018 IPR006674 HD domain CLM_0401 e2f400e05929c6cc1280e0aa62505a1a 567 SMART SM00267 183 357 1.5E-58 T 13-10-2018 IPR000160 GGDEF domain CLM_3566 d038395e635af61f2bdf3acbac15a549 251 Gene3D G3DSA:3.40.50.720 3 246 2.0E-79 T 13-10-2018 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 114 247 2.3E-43 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 SUPERFAMILY SSF55347 113 219 2.83E-31 T 13-10-2018 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 SUPERFAMILY SSF51735 1 248 4.3E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3566 d038395e635af61f2bdf3acbac15a549 251 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 111 1.7E-28 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 PIRSF PIRSF000161 1 250 1.7E-82 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 248 31.038 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 136 153 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 Gene3D G3DSA:3.30.360.10 113 217 2.0E-79 T 13-10-2018 CLM_3566 d038395e635af61f2bdf3acbac15a549 251 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 247 3.9E-66 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CLM_3088 aac156f5fa4d80ce330fc12048805e89 223 SUPERFAMILY SSF56784 5 222 7.05E-33 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3088 aac156f5fa4d80ce330fc12048805e89 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 189 1.1E-33 T 13-10-2018 CLM_3088 aac156f5fa4d80ce330fc12048805e89 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 88 184 1.2E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3088 aac156f5fa4d80ce330fc12048805e89 223 Gene3D G3DSA:3.40.50.1000 7 217 2.5E-43 T 13-10-2018 IPR023214 HAD superfamily CLM_3088 aac156f5fa4d80ce330fc12048805e89 223 Gene3D G3DSA:1.10.150.520 19 90 2.5E-43 T 13-10-2018 CLM_3088 aac156f5fa4d80ce330fc12048805e89 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 188 4.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_0729 ab6382a6814ddec643a42b75c360c9b4 156 Gene3D G3DSA:3.40.630.30 3 156 4.4E-33 T 13-10-2018 CLM_0729 ab6382a6814ddec643a42b75c360c9b4 156 SUPERFAMILY SSF55729 1 152 3.49E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0729 ab6382a6814ddec643a42b75c360c9b4 156 Pfam PF00583 Acetyltransferase (GNAT) family 49 145 6.3E-17 T 13-10-2018 IPR000182 GNAT domain CLM_2971 0b07136216341717eff6a6387c5575f0 62 Gene3D G3DSA:1.10.287.540 3 56 5.2E-21 T 13-10-2018 CLM_2971 0b07136216341717eff6a6387c5575f0 62 Pfam PF05979 Bacterial protein of unknown function (DUF896) 5 53 1.1E-18 T 13-10-2018 IPR009242 Protein of unknown function DUF896 CLM_2971 0b07136216341717eff6a6387c5575f0 62 SUPERFAMILY SSF158221 1 42 9.94E-15 T 13-10-2018 CLM_2971 0b07136216341717eff6a6387c5575f0 62 Hamap MF_01103 UPF0291 protein . 1 61 14.52 T 13-10-2018 IPR009242 Protein of unknown function DUF896 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 SUPERFAMILY SSF50494 95 305 7.09E-59 T 13-10-2018 IPR009003 Peptidase S1, PA clan CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 SUPERFAMILY SSF50156 278 382 1.13E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 Pfam PF13180 PDZ domain 297 382 4.8E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 SMART SM00228 297 373 8.0E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 PRINTS PR00834 HtrA/DegQ protease family signature 135 147 7.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 PRINTS PR00834 HtrA/DegQ protease family signature 156 176 7.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 PRINTS PR00834 HtrA/DegQ protease family signature 233 250 7.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 PRINTS PR00834 HtrA/DegQ protease family signature 331 343 7.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 PRINTS PR00834 HtrA/DegQ protease family signature 255 272 7.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 PRINTS PR00834 HtrA/DegQ protease family signature 196 220 7.0E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 Pfam PF13365 Trypsin-like peptidase domain 126 262 3.0E-33 T 13-10-2018 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 Gene3D G3DSA:2.40.10.10 187 297 1.4E-37 T 13-10-2018 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 Gene3D G3DSA:2.40.10.10 76 186 2.5E-30 T 13-10-2018 CLM_4033 6107d9db65530a2ceb7e7e290d7381dd 390 Gene3D G3DSA:2.30.42.10 298 390 1.7E-25 T 13-10-2018 CLM_1136 82cfdaf629884d4bbaedfd71289facaf 197 PIRSF PIRSF022704 1 197 7.8E-67 T 13-10-2018 IPR015987 Uncharacterised conserved protein UCP022704 CLM_1136 82cfdaf629884d4bbaedfd71289facaf 197 Pfam PF07081 Protein of unknown function (DUF1349) 11 190 2.4E-67 T 13-10-2018 IPR009784 Protein of unknown function DUF1349 CLM_1136 82cfdaf629884d4bbaedfd71289facaf 197 Gene3D G3DSA:2.60.120.200 5 196 3.0E-55 T 13-10-2018 CLM_1136 82cfdaf629884d4bbaedfd71289facaf 197 SUPERFAMILY SSF49899 11 190 1.07E-41 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_3331 66a771f31b38a6414beb0ee4afce4cc9 295 Pfam PF10882 Bacterial PH domain 64 162 1.9E-32 T 13-10-2018 IPR027783 Bacterial Pleckstrin homology domain-related CLM_3331 66a771f31b38a6414beb0ee4afce4cc9 295 ProDom PD076125 CPE2006 TRANSMEMBRANE MEMBRANE CAC1301 1 291 2.0E-67 T 13-10-2018 IPR020482 Uncharacterised protein family CAC1301 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 353 1.2E-170 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 Gene3D G3DSA:3.30.160.20 209 295 3.8E-99 T 13-10-2018 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 Gene3D G3DSA:1.20.58.410 4 93 1.8E-8 T 13-10-2018 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 SMART SM00937 63 177 5.6E-69 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 Gene3D G3DSA:3.30.70.1660 110 340 3.8E-99 T 13-10-2018 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 Pfam PF03462 PCRF domain 8 202 9.0E-79 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 355 41.408 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 Pfam PF00472 RF-1 domain 210 319 2.9E-40 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CLM_0182 fb308ad82c80e292b4051c724dcd2c75 358 SUPERFAMILY SSF75620 8 351 5.76E-141 T 13-10-2018 CLM_1882 d2727566ef296fe296295350607e067c 425 Gene3D G3DSA:3.30.360.10 136 339 2.6E-159 T 13-10-2018 CLM_1882 d2727566ef296fe296295350607e067c 425 PIRSF PIRSF000098 1 424 2.9E-166 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CLM_1882 d2727566ef296fe296295350607e067c 425 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 4.0E-19 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CLM_1882 d2727566ef296fe296295350607e067c 425 SUPERFAMILY SSF55347 137 302 3.01E-55 T 13-10-2018 CLM_1882 d2727566ef296fe296295350607e067c 425 SUPERFAMILY SSF55021 344 416 1.42E-13 T 13-10-2018 CLM_1882 d2727566ef296fe296295350607e067c 425 Gene3D G3DSA:3.30.70.260 340 412 2.6E-159 T 13-10-2018 CLM_1882 d2727566ef296fe296295350607e067c 425 SUPERFAMILY SSF51735 3 158 4.25E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1882 d2727566ef296fe296295350607e067c 425 Pfam PF01842 ACT domain 345 410 1.1E-12 T 13-10-2018 IPR002912 ACT domain CLM_1882 d2727566ef296fe296295350607e067c 425 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CLM_1882 d2727566ef296fe296295350607e067c 425 Gene3D G3DSA:3.40.50.720 4 331 2.6E-159 T 13-10-2018 CLM_1882 d2727566ef296fe296295350607e067c 425 Pfam PF00742 Homoserine dehydrogenase 137 315 3.8E-67 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 SUPERFAMILY SSF160443 712 788 1.31E-10 T 13-10-2018 IPR036063 Smr domain superfamily CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 SMART SM00534 325 510 5.7E-76 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 SMART SM00463 710 788 3.6E-16 T 13-10-2018 IPR002625 Smr domain CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 Gene3D G3DSA:3.40.50.300 291 595 3.1E-83 T 13-10-2018 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 Gene3D G3DSA:3.30.1370.110 702 788 2.3E-24 T 13-10-2018 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 TIGRFAM TIGR01069 mutS2: MutS2 family protein 2 788 1.6E-224 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 SUPERFAMILY SSF52540 289 510 1.39E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 Pfam PF00488 MutS domain V 329 509 2.3E-36 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 407 423 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 787 21.869 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 SUPERFAMILY SSF48334 63 287 2.09E-16 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 SMART SM00533 9 312 5.8E-22 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 PIRSF PIRSF005814 1 788 3.8E-268 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CLM_3528 c0dd809bf66e81d60fea52acd05fc7b3 788 Pfam PF01713 Smr domain 713 788 4.1E-22 T 13-10-2018 IPR002625 Smr domain CLM_2254 ff8e9cd884783ad7e101274ba529d30d 647 SUPERFAMILY SSF53300 437 602 1.24E-15 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CLM_2254 ff8e9cd884783ad7e101274ba529d30d 647 SMART SM00327 436 631 1.8E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A CLM_2254 ff8e9cd884783ad7e101274ba529d30d 647 Gene3D G3DSA:3.40.50.410 434 627 1.7E-18 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CLM_2254 ff8e9cd884783ad7e101274ba529d30d 647 Pfam PF00092 von Willebrand factor type A domain 439 602 2.4E-9 T 13-10-2018 IPR002035 von Willebrand factor, type A CLM_3648 f56dc77e98074718c03655c8a105faf1 298 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 236 256 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CLM_3648 f56dc77e98074718c03655c8a105faf1 298 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 2 297 3.1E-106 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CLM_3648 f56dc77e98074718c03655c8a105faf1 298 PIRSF PIRSF000164 1 298 1.6E-77 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 CLM_3648 f56dc77e98074718c03655c8a105faf1 298 Pfam PF01180 Dihydroorotate dehydrogenase 1 283 4.9E-72 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CLM_3648 f56dc77e98074718c03655c8a105faf1 298 Gene3D G3DSA:3.20.20.70 1 297 3.5E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3648 f56dc77e98074718c03655c8a105faf1 298 SUPERFAMILY SSF51395 2 297 4.03E-83 T 13-10-2018 CLM_3648 f56dc77e98074718c03655c8a105faf1 298 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 2 298 39.686 T 13-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 CLM_2882 7391c73dfea6dfc2097b013e3843fcc1 329 PIRSF PIRSF001439 1 329 4.1E-83 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CLM_2882 7391c73dfea6dfc2097b013e3843fcc1 329 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 2 321 3.3E-79 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CLM_2882 7391c73dfea6dfc2097b013e3843fcc1 329 Gene3D G3DSA:3.40.50.720 124 302 2.3E-103 T 13-10-2018 CLM_2882 7391c73dfea6dfc2097b013e3843fcc1 329 SUPERFAMILY SSF51735 1 328 2.36E-93 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2882 7391c73dfea6dfc2097b013e3843fcc1 329 Gene3D G3DSA:3.30.1780.10 4 324 2.3E-103 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 CLM_2710 9e3140422f57e1afaec353d6750f4718 120 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 8 96 1.0E-24 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CLM_2710 9e3140422f57e1afaec353d6750f4718 120 Pfam PF02033 Ribosome-binding factor A 5 109 5.2E-32 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CLM_2710 9e3140422f57e1afaec353d6750f4718 120 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 114 8.4E-35 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CLM_2710 9e3140422f57e1afaec353d6750f4718 120 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 4 109 26.738 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CLM_2710 9e3140422f57e1afaec353d6750f4718 120 Gene3D G3DSA:3.30.300.20 1 118 2.4E-38 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_2710 9e3140422f57e1afaec353d6750f4718 120 ProSitePatterns PS01319 Ribosome-binding factor A signature. 75 96 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 CLM_2710 9e3140422f57e1afaec353d6750f4718 120 SUPERFAMILY SSF89919 2 112 1.26E-34 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily CLM_1359 96357cbc55771745475dbe52451126a6 123 SUPERFAMILY SSF46785 4 78 2.87E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1359 96357cbc55771745475dbe52451126a6 123 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.1E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1359 96357cbc55771745475dbe52451126a6 123 Gene3D G3DSA:1.10.10.10 8 120 7.0E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1359 96357cbc55771745475dbe52451126a6 123 SMART SM00345 15 74 9.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1551 08b37bd9338d11c8c04a7ccb504f85f7 125 Pfam PF08000 Bacterial PH domain 2 123 4.7E-52 T 13-10-2018 IPR012544 Bacterial Pleckstrin homology domain CLM_1551 08b37bd9338d11c8c04a7ccb504f85f7 125 Gene3D G3DSA:2.30.29.50 1 125 3.7E-54 T 13-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily CLM_1551 08b37bd9338d11c8c04a7ccb504f85f7 125 SUPERFAMILY SSF50729 6 124 2.75E-46 T 13-10-2018 CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 Pfam PF14821 Threonine synthase N terminus 3 78 1.7E-26 T 13-10-2018 IPR029144 Threonine synthase, N-terminal CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 96 420 6.7E-14 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 Gene3D G3DSA:3.40.50.1100 96 440 2.8E-130 T 13-10-2018 CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 TIGRFAM TIGR00260 thrC: threonine synthase 94 439 7.7E-72 T 13-10-2018 IPR004450 Threonine synthase-like CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 Gene3D G3DSA:3.90.1380.10 1 84 1.6E-25 T 13-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 Gene3D G3DSA:3.40.50.1100 106 228 2.8E-130 T 13-10-2018 CLM_1879 12395ef015d722a2ccf8dda56726ca8a 493 SUPERFAMILY SSF53686 2 491 1.86E-136 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_1324 b33919b9d64d6329bbb08555259a357c 264 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 257 2.1E-59 T 13-10-2018 CLM_1324 b33919b9d64d6329bbb08555259a357c 264 SUPERFAMILY SSF56784 1 260 1.65E-64 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1324 b33919b9d64d6329bbb08555259a357c 264 Gene3D G3DSA:3.30.1240.10 83 187 6.2E-66 T 13-10-2018 CLM_1324 b33919b9d64d6329bbb08555259a357c 264 Gene3D G3DSA:3.40.50.1000 5 257 6.2E-66 T 13-10-2018 IPR023214 HAD superfamily CLM_1324 b33919b9d64d6329bbb08555259a357c 264 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 230 1.8E-26 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CLM_1324 b33919b9d64d6329bbb08555259a357c 264 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 257 9.0E-52 T 13-10-2018 IPR000150 Cof family GO:0016787 CLM_1324 b33919b9d64d6329bbb08555259a357c 264 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 CLM_1105 56d352f18f464a11e1f00c6869d558a8 173 Gene3D G3DSA:3.40.50.300 1 172 1.2E-61 T 13-10-2018 CLM_1105 56d352f18f464a11e1f00c6869d558a8 173 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 2 172 1.1E-51 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CLM_1105 56d352f18f464a11e1f00c6869d558a8 173 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 4 172 1.5E-61 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CLM_1105 56d352f18f464a11e1f00c6869d558a8 173 PIRSF PIRSF015617 1 173 5.8E-63 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CLM_1105 56d352f18f464a11e1f00c6869d558a8 173 SUPERFAMILY SSF52540 2 172 7.73E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 Gene3D G3DSA:3.90.180.10 24 328 1.1E-105 T 13-10-2018 CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 Gene3D G3DSA:3.40.50.720 152 288 1.1E-105 T 13-10-2018 CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 SMART SM00829 11 347 6.6E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 SUPERFAMILY SSF50129 4 173 1.46E-54 T 13-10-2018 IPR011032 GroES-like superfamily CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 Pfam PF00107 Zinc-binding dehydrogenase 174 293 6.7E-28 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 SUPERFAMILY SSF51735 141 311 3.2E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CLM_3884 46e7b9a8ffc27e72e6d490e840e15d95 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 132 3.6E-33 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 5 183 2.6E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 94 178 9.6E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 8.6E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 8.6E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 8.6E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 8.6E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 SUPERFAMILY SSF56784 1 187 4.14E-49 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 Gene3D G3DSA:3.40.50.1000 5 188 7.9E-51 T 13-10-2018 IPR023214 HAD superfamily CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 Gene3D G3DSA:1.10.150.240 16 84 7.9E-51 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_3878 8a8e4b7b08953883ffe8d9d57f5f0f74 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 1.5E-43 T 13-10-2018 CLM_4038 94300cd7e0bd8e213ce3ffee5d90e2a9 95 SUPERFAMILY SSF160537 1 85 9.55E-36 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 CLM_4038 94300cd7e0bd8e213ce3ffee5d90e2a9 95 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 93 28.93 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 CLM_4038 94300cd7e0bd8e213ce3ffee5d90e2a9 95 Pfam PF04026 SpoVG 1 81 1.1E-39 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 CLM_4038 94300cd7e0bd8e213ce3ffee5d90e2a9 95 Gene3D G3DSA:3.30.1120.40 1 95 3.6E-40 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 Pfam PF02743 Cache domain 37 292 1.1E-29 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 Gene3D G3DSA:3.30.450.20 115 202 5.2E-34 T 13-10-2018 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 Gene3D G3DSA:3.30.450.20 203 301 5.2E-34 T 13-10-2018 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 467 637 3.0E-39 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 SMART SM00304 330 385 1.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 Gene3D G3DSA:1.10.287.950 356 689 1.9E-63 T 13-10-2018 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 SUPERFAMILY SSF58104 360 689 3.4E-65 T 13-10-2018 CLM_1761 eaa8b2cb5e9884e71f2ca0e50e14be40 690 SMART SM00283 414 689 4.6E-60 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1411 04177783752ce65c4913e3fb735dbd7a 486 Gene3D G3DSA:3.40.309.10 263 449 3.8E-159 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CLM_1411 04177783752ce65c4913e3fb735dbd7a 486 SUPERFAMILY SSF53720 8 483 1.57E-152 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CLM_1411 04177783752ce65c4913e3fb735dbd7a 486 Pfam PF00171 Aldehyde dehydrogenase family 20 480 1.7E-162 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CLM_1411 04177783752ce65c4913e3fb735dbd7a 486 Gene3D G3DSA:3.40.605.10 16 478 3.8E-159 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_1411 04177783752ce65c4913e3fb735dbd7a 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CLM_1411 04177783752ce65c4913e3fb735dbd7a 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 286 297 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 Gene3D G3DSA:3.40.50.970 315 489 7.9E-67 T 13-10-2018 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 Gene3D G3DSA:3.40.50.920 493 622 2.0E-36 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 SMART SM00861 317 481 1.7E-64 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 SUPERFAMILY SSF52518 6 348 3.93E-79 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 Pfam PF02779 Transketolase, pyrimidine binding domain 317 476 2.1E-37 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 ProSitePatterns PS00801 Transketolase signature 1. 32 51 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 ProSitePatterns PS00802 Transketolase signature 2. 423 439 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 SUPERFAMILY SSF52922 491 621 4.06E-32 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 Pfam PF02780 Transketolase, C-terminal domain 493 614 1.5E-30 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 6 622 44.474 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 11 621 6.3E-253 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 SUPERFAMILY SSF52518 291 477 1.68E-59 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_2098 49c99d7cef6b0fdef7242b42515b9b77 622 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 7 282 9.3E-122 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_2718 9bfc0794bcb84244eccba02219b2287f 336 Pfam PF13180 PDZ domain 119 181 4.4E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_2718 9bfc0794bcb84244eccba02219b2287f 336 SUPERFAMILY SSF50156 79 182 2.76E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CLM_2718 9bfc0794bcb84244eccba02219b2287f 336 Pfam PF02163 Peptidase family M50 6 321 3.5E-78 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 CLM_2718 9bfc0794bcb84244eccba02219b2287f 336 SMART SM00228 102 174 9.7E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CLM_2718 9bfc0794bcb84244eccba02219b2287f 336 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 117 331 3.5E-50 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 CLM_2718 9bfc0794bcb84244eccba02219b2287f 336 Gene3D G3DSA:2.30.42.10 117 200 1.6E-21 T 13-10-2018 CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 SMART SM00530 10 65 2.0E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 Pfam PF01381 Helix-turn-helix 11 64 7.7E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 SUPERFAMILY SSF47413 2 69 2.47E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 Gene3D G3DSA:1.10.260.40 1 74 1.6E-18 T 13-10-2018 CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 SUPERFAMILY SSF51182 50 181 8.13E-17 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 Gene3D G3DSA:2.60.120.10 92 182 7.3E-22 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0838 c3b08dcd9861bb7baa71b979e406e722 182 Pfam PF07883 Cupin domain 110 178 9.5E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_2695 500c9703399e446329c1fdad4dc28f5f 86 Pfam PF04232 Stage V sporulation protein S (SpoVS) 2 83 1.9E-40 T 13-10-2018 IPR007347 Sporulation stage V, protein S CLM_2695 500c9703399e446329c1fdad4dc28f5f 86 Gene3D G3DSA:3.30.110.20 1 86 1.2E-36 T 13-10-2018 IPR036882 Alba-like domain superfamily GO:0003676 CLM_2695 500c9703399e446329c1fdad4dc28f5f 86 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 3 86 4.0E-27 T 13-10-2018 IPR007347 Sporulation stage V, protein S CLM_3700 d4a23d4fcf4269446d71589aa65c78b2 485 SUPERFAMILY SSF75304 1 482 7.59E-162 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CLM_3700 d4a23d4fcf4269446d71589aa65c78b2 485 ProSitePatterns PS00571 Amidases signature. 152 183 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 CLM_3700 d4a23d4fcf4269446d71589aa65c78b2 485 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 12 477 3.6E-197 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CLM_3700 d4a23d4fcf4269446d71589aa65c78b2 485 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 477 93.948 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CLM_3700 d4a23d4fcf4269446d71589aa65c78b2 485 Pfam PF01425 Amidase 24 464 1.9E-160 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CLM_3700 d4a23d4fcf4269446d71589aa65c78b2 485 Gene3D G3DSA:3.90.1300.10 2 485 4.1E-193 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 SUPERFAMILY SSF55073 212 352 1.73E-35 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 205 352 9.0E-37 T 13-10-2018 IPR000160 GGDEF domain CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 Gene3D G3DSA:3.30.70.270 198 354 1.6E-40 T 13-10-2018 CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 SMART SM00267 196 355 1.4E-38 T 13-10-2018 IPR000160 GGDEF domain CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 SUPERFAMILY SSF55781 36 202 1.57E-9 T 13-10-2018 CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 Gene3D G3DSA:3.30.450.40 32 196 3.9E-12 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_0135 cea21a606b2b36ea3aafa71a5502fc1e 356 Pfam PF00990 Diguanylate cyclase, GGDEF domain 207 353 9.7E-37 T 13-10-2018 IPR000160 GGDEF domain CLM_0316 296033cf849f04458f42a47ec74559f2 159 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 14 153 4.1E-56 T 13-10-2018 IPR014203 Sporulation stage V, protein AC CLM_0316 296033cf849f04458f42a47ec74559f2 159 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 32 149 5.9E-37 T 13-10-2018 IPR005562 SpoVA CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 Gene3D G3DSA:3.40.640.10 62 284 2.0E-138 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 Gene3D G3DSA:3.90.1150.10 25 389 2.0E-138 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 SUPERFAMILY SSF53383 1 395 9.95E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 228 252 7.6E-13 T 13-10-2018 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 7.6E-13 T 13-10-2018 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 7.6E-13 T 13-10-2018 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 7.6E-13 T 13-10-2018 CLM_2691 8c5cf699b72f04eddec2d5f3b9fa037b 397 Pfam PF00155 Aminotransferase class I and II 31 389 4.1E-73 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1075 2ade0dbad32bdfd596b0cb93885ad50e 239 SUPERFAMILY SSF52218 1 155 7.76E-22 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1075 2ade0dbad32bdfd596b0cb93885ad50e 239 Gene3D G3DSA:3.40.50.360 1 237 5.2E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1075 2ade0dbad32bdfd596b0cb93885ad50e 239 Pfam PF03358 NADPH-dependent FMN reductase 1 137 6.2E-17 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_1039 964880333f829718f918238b3b66fcbe 196 SUPERFAMILY SSF81301 22 187 4.58E-45 T 13-10-2018 CLM_1039 964880333f829718f918238b3b66fcbe 196 Pfam PF04229 GrpB protein 19 181 1.8E-43 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase CLM_1039 964880333f829718f918238b3b66fcbe 196 Gene3D G3DSA:3.30.460.10 18 189 6.9E-45 T 13-10-2018 CLM_3289 a4ff135af2b0c002bff4b4d4d37aa92e 269 Gene3D G3DSA:3.40.50.720 106 268 6.1E-48 T 13-10-2018 CLM_3289 a4ff135af2b0c002bff4b4d4d37aa92e 269 Pfam PF13478 XdhC Rossmann domain 107 249 1.7E-38 T 13-10-2018 IPR027051 XdhC Rossmann domain CLM_3289 a4ff135af2b0c002bff4b4d4d37aa92e 269 Pfam PF02625 XdhC and CoxI family 14 78 7.7E-19 T 13-10-2018 IPR003777 XdhC- CoxI CLM_4044 34bc956ffb43900febd2a569ece0e134 214 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 186 1.3E-27 T 13-10-2018 CLM_4044 34bc956ffb43900febd2a569ece0e134 214 SUPERFAMILY SSF56784 3 212 5.6E-40 T 13-10-2018 IPR036412 HAD-like superfamily CLM_4044 34bc956ffb43900febd2a569ece0e134 214 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 4.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_4044 34bc956ffb43900febd2a569ece0e134 214 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 99 112 4.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_4044 34bc956ffb43900febd2a569ece0e134 214 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 4.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_4044 34bc956ffb43900febd2a569ece0e134 214 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 4.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_4044 34bc956ffb43900febd2a569ece0e134 214 Gene3D G3DSA:1.10.150.240 18 86 2.5E-45 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_4044 34bc956ffb43900febd2a569ece0e134 214 Gene3D G3DSA:3.40.50.1000 8 198 2.5E-45 T 13-10-2018 IPR023214 HAD superfamily CLM_4044 34bc956ffb43900febd2a569ece0e134 214 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 60 186 5.1E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_1246 9b9c328c6865f906ba6d3fe9f76cb7bd 270 Gene3D G3DSA:3.40.190.10 118 220 4.8E-102 T 13-10-2018 CLM_1246 9b9c328c6865f906ba6d3fe9f76cb7bd 270 PIRSF PIRSF002854 1 270 4.5E-109 T 13-10-2018 IPR004872 Lipoprotein NlpA family CLM_1246 9b9c328c6865f906ba6d3fe9f76cb7bd 270 Gene3D G3DSA:3.40.190.10 39 268 4.8E-102 T 13-10-2018 CLM_1246 9b9c328c6865f906ba6d3fe9f76cb7bd 270 Pfam PF03180 NLPA lipoprotein 37 270 2.6E-97 T 13-10-2018 IPR004872 Lipoprotein NlpA family CLM_1246 9b9c328c6865f906ba6d3fe9f76cb7bd 270 SUPERFAMILY SSF53850 36 270 1.41E-86 T 13-10-2018 CLM_0658 96311591cb64bc3827f1fcfff555cdf7 227 Gene3D G3DSA:1.10.1760.20 53 217 3.9E-47 T 13-10-2018 CLM_0658 96311591cb64bc3827f1fcfff555cdf7 227 TIGRFAM TIGR02357 ECF_ThiT_YuaJ: energy-coupled thiamine transporter ThiT 55 211 6.0E-45 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 CLM_0658 96311591cb64bc3827f1fcfff555cdf7 227 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 57 211 4.6E-47 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 SUPERFAMILY SSF51161 256 445 2.36E-47 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Gene3D G3DSA:3.90.550.10 2 251 2.6E-76 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Pfam PF00483 Nucleotidyl transferase 5 215 6.1E-24 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 5 452 2.8E-171 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 SUPERFAMILY SSF53448 2 253 4.28E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 394 428 7.4E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 317 351 2.3E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 266 299 7.0E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Gene3D G3DSA:2.160.10.10 252 438 7.4E-52 T 13-10-2018 CLM_4037 f3664952d0a21bd9653fa9dfa0cdb984 457 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 451 39.73 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 CLM_0116 516f34ae2736548f7a6392a37dddcd86 445 PIRSF PIRSF006603 2 445 2.5E-96 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0116 516f34ae2736548f7a6392a37dddcd86 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 421 7.1E-84 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0116 516f34ae2736548f7a6392a37dddcd86 445 Pfam PF01554 MatE 245 406 7.3E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0116 516f34ae2736548f7a6392a37dddcd86 445 Pfam PF01554 MatE 17 179 1.9E-29 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1848 ab034cc7d95c505ebaa58473a66c8b63 263 SUPERFAMILY SSF56219 1 261 1.96E-35 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_1848 ab034cc7d95c505ebaa58473a66c8b63 263 Gene3D G3DSA:3.60.10.10 1 263 1.3E-77 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_1848 ab034cc7d95c505ebaa58473a66c8b63 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 254 1.7E-8 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CLM_0750 f34dc038e1f59c6a16df778d055b2750 162 SUPERFAMILY SSF47240 6 153 5.09E-25 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_0750 f34dc038e1f59c6a16df778d055b2750 162 Pfam PF02915 Rubrerythrin 9 146 2.0E-16 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 CLM_0750 f34dc038e1f59c6a16df778d055b2750 162 Gene3D G3DSA:1.20.1260.10 2 150 1.2E-28 T 13-10-2018 IPR012347 Ferritin-like CLM_3888 4c0be32dba8488c114e680bd464077e8 249 SUPERFAMILY SSF52518 12 239 8.96E-60 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_3888 4c0be32dba8488c114e680bd464077e8 249 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 50 209 3.9E-25 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CLM_3888 4c0be32dba8488c114e680bd464077e8 249 Gene3D G3DSA:3.40.50.970 74 239 4.9E-22 T 13-10-2018 CLM_0751 20f4e5ec715f0807ce36368baf389859 145 Pfam PF01047 MarR family 41 88 6.2E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0751 20f4e5ec715f0807ce36368baf389859 145 Gene3D G3DSA:1.10.10.10 7 144 6.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0751 20f4e5ec715f0807ce36368baf389859 145 SUPERFAMILY SSF46785 8 139 1.11E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0751 20f4e5ec715f0807ce36368baf389859 145 SMART SM00347 24 124 2.0E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0751 20f4e5ec715f0807ce36368baf389859 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0751 20f4e5ec715f0807ce36368baf389859 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0751 20f4e5ec715f0807ce36368baf389859 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0751 20f4e5ec715f0807ce36368baf389859 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1172 28401176329099fede0131edef86bed2 273 Gene3D G3DSA:1.10.1660.10 1 120 3.0E-25 T 13-10-2018 CLM_1172 28401176329099fede0131edef86bed2 273 Pfam PF13411 MerR HTH family regulatory protein 5 72 7.6E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1172 28401176329099fede0131edef86bed2 273 Pfam PF06445 GyrI-like small molecule binding domain 128 269 3.4E-9 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_1172 28401176329099fede0131edef86bed2 273 SUPERFAMILY SSF46955 4 111 4.4E-28 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_1172 28401176329099fede0131edef86bed2 273 Gene3D G3DSA:3.20.80.10 121 272 1.1E-19 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1172 28401176329099fede0131edef86bed2 273 SMART SM00422 5 75 1.5E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1172 28401176329099fede0131edef86bed2 273 SMART SM00871 122 271 3.3E-9 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CLM_1172 28401176329099fede0131edef86bed2 273 SUPERFAMILY SSF55136 129 269 1.46E-25 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 Gene3D G3DSA:3.10.290.10 1 60 6.5E-20 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 SUPERFAMILY SSF55174 1 91 9.92E-17 T 13-10-2018 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 SMART SM00363 3 62 8.3E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 Pfam PF01479 S4 domain 3 45 2.3E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 SUPERFAMILY SSF55120 61 231 1.76E-45 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 Pfam PF00849 RNA pseudouridylate synthase 65 195 1.7E-19 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 101 115 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 69 227 2.6E-49 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 Gene3D G3DSA:3.30.70.580 65 230 4.8E-55 T 13-10-2018 CLM_1970 bf4b6732c6a2c33eea220e8e41be653a 236 Gene3D G3DSA:3.30.70.1560 130 213 4.8E-55 T 13-10-2018 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 215 233 6.6E-30 T 13-10-2018 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 172 195 6.6E-30 T 13-10-2018 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 197 214 6.6E-30 T 13-10-2018 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 53 77 6.6E-30 T 13-10-2018 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 144 168 6.6E-30 T 13-10-2018 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 Gene3D G3DSA:4.10.480.10 210 289 4.7E-31 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 45 192 5.4E-29 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 Gene3D G3DSA:3.40.50.700 28 209 9.5E-56 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 PIRSF PIRSF000310 2 290 1.2E-97 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 210 287 5.9E-31 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 22 287 2.5E-68 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CLM_1998 7e2aac179da2be1ed08647779c64ade4 290 SUPERFAMILY SSF56770 33 289 7.2E-74 T 13-10-2018 CLM_2176 a685e6b81d0b7784af15191263cfb238 682 Gene3D G3DSA:2.10.10.20 638 680 2.7E-19 T 13-10-2018 CLM_2176 a685e6b81d0b7784af15191263cfb238 682 SUPERFAMILY SSF51055 637 680 7.06E-14 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_2176 a685e6b81d0b7784af15191263cfb238 682 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 150 429 2.4E-45 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 CLM_2176 a685e6b81d0b7784af15191263cfb238 682 SMART SM00495 635 681 4.0E-11 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_2797 e777cf54a2f4764225c2f607192002ea 116 Pfam PF03780 Asp23 family, cell envelope-related function 9 115 4.5E-34 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 Pfam PF00203 Ribosomal protein S19 3 83 2.5E-35 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 8.7E-43 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 PIRSF PIRSF002144 1 94 3.3E-32 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.264 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 6.4E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 6.4E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 6.4E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 SUPERFAMILY SSF54570 2 84 7.72E-35 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3944 277b0aef000f9ca2b374e537f7a5a473 94 Gene3D G3DSA:3.30.860.10 1 92 2.0E-38 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1423 d83d66c38ac6150dbd5b8d46cf67ad1b 388 Pfam PF02504 Fatty acid synthesis protein 31 366 1.9E-69 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 CLM_1423 d83d66c38ac6150dbd5b8d46cf67ad1b 388 SUPERFAMILY SSF53659 30 296 2.47E-27 T 13-10-2018 CLM_1423 d83d66c38ac6150dbd5b8d46cf67ad1b 388 Gene3D G3DSA:3.40.718.10 112 236 2.1E-12 T 13-10-2018 CLM_1423 d83d66c38ac6150dbd5b8d46cf67ad1b 388 PIRSF PIRSF036593 4 388 5.4E-189 T 13-10-2018 IPR012116 Glycine/sarcosine/betaine reductase complex, protein C, alpha subunit CLM_0793 5220f67d6808bc69014d22e502cc09fb 395 SUPERFAMILY SSF116734 179 393 6.21E-34 T 13-10-2018 CLM_0793 5220f67d6808bc69014d22e502cc09fb 395 Gene3D G3DSA:3.90.220.20 192 393 2.0E-34 T 13-10-2018 CLM_0793 5220f67d6808bc69014d22e502cc09fb 395 Gene3D G3DSA:3.90.220.20 3 191 1.2E-35 T 13-10-2018 CLM_0793 5220f67d6808bc69014d22e502cc09fb 395 SUPERFAMILY SSF116734 5 190 8.67E-36 T 13-10-2018 CLM_0793 5220f67d6808bc69014d22e502cc09fb 395 Pfam PF01420 Type I restriction modification DNA specificity domain 198 376 4.8E-13 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CLM_0793 5220f67d6808bc69014d22e502cc09fb 395 Pfam PF01420 Type I restriction modification DNA specificity domain 4 175 7.4E-12 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3 346 2.3E-131 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 Gene3D G3DSA:3.20.20.20 1 254 1.6E-108 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 SUPERFAMILY SSF56014 261 346 4.07E-13 T 13-10-2018 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 1 348 33.716 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 Pfam PF04551 GcpE protein 6 348 1.8E-143 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 SUPERFAMILY SSF51717 11 211 1.57E-12 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 Gene3D G3DSA:3.30.413.10 256 349 2.9E-39 T 13-10-2018 CLM_2717 fa6bfa904e25609b8e819d135d4545b4 349 PIRSF PIRSF004640 1 349 8.7E-151 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CLM_3493 20e4e0198dc9d4d28776ba6f4cf0d388 140 SUPERFAMILY SSF55874 31 135 1.05E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3493 20e4e0198dc9d4d28776ba6f4cf0d388 140 Gene3D G3DSA:3.30.565.10 2 139 1.7E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3493 20e4e0198dc9d4d28776ba6f4cf0d388 140 TIGRFAM TIGR01925 spIIAB: anti-sigma F factor 3 137 6.1E-69 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 CLM_3493 20e4e0198dc9d4d28776ba6f4cf0d388 140 Hamap MF_00637 Anti-sigma F factor [spoIIAB]. 2 140 34.187 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 CLM_3493 20e4e0198dc9d4d28776ba6f4cf0d388 140 Pfam PF13581 Histidine kinase-like ATPase domain 15 137 1.3E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3482 df416c6b496af53993f12089733bc02d 297 Pfam PF01909 Nucleotidyltransferase domain 15 95 2.1E-10 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CLM_3482 df416c6b496af53993f12089733bc02d 297 Gene3D G3DSA:3.30.460.10 3 88 1.3E-9 T 13-10-2018 CLM_3482 df416c6b496af53993f12089733bc02d 297 SUPERFAMILY SSF81301 5 81 1.1E-12 T 13-10-2018 CLM_1652 19804c19f0c752ad875e496d508b655f 201 Gene3D G3DSA:1.10.443.10 8 199 1.8E-29 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_1652 19804c19f0c752ad875e496d508b655f 201 Pfam PF00589 Phage integrase family 16 185 6.3E-20 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_1652 19804c19f0c752ad875e496d508b655f 201 SUPERFAMILY SSF56349 16 195 4.71E-32 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 15 184 29.388 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 ProSitePatterns PS00938 Initiation factor 3 signature. 72 85 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 Gene3D G3DSA:3.30.110.10 90 184 5.8E-35 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 21 183 2.1E-67 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 21 90 9.9E-33 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 97 181 5.3E-35 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 Gene3D G3DSA:3.10.20.80 15 89 2.8E-34 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 SUPERFAMILY SSF54364 18 92 1.29E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CLM_3544 0e1f2ad353fd9fcac36e28ecca164d5d 184 SUPERFAMILY SSF55200 96 183 3.92E-29 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 SUPERFAMILY SSF51735 101 250 6.63E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 115 202 1.6E-5 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 SUPERFAMILY SSF53223 2 100 4.32E-27 T 13-10-2018 CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 249 1.2E-63 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 Gene3D G3DSA:3.40.50.10860 5 249 3.0E-76 T 13-10-2018 CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 Gene3D G3DSA:3.40.50.720 100 233 3.0E-76 T 13-10-2018 CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 1.8E-27 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CLM_2844 4cff3b6f2dd0d7f09b9774abb04fbc73 258 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 257 26.904 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CLM_1277 ba9652b09070da0c182dc6205f51e33d 145 Pfam PF00571 CBS domain 77 127 6.3E-5 T 13-10-2018 IPR000644 CBS domain CLM_1277 ba9652b09070da0c182dc6205f51e33d 145 Pfam PF00571 CBS domain 13 59 2.8E-9 T 13-10-2018 IPR000644 CBS domain CLM_1277 ba9652b09070da0c182dc6205f51e33d 145 SUPERFAMILY SSF54631 1 130 2.15E-29 T 13-10-2018 CLM_1277 ba9652b09070da0c182dc6205f51e33d 145 SMART SM00116 12 60 0.0053 T 13-10-2018 IPR000644 CBS domain CLM_1277 ba9652b09070da0c182dc6205f51e33d 145 Gene3D G3DSA:3.10.580.10 1 145 7.1E-45 T 13-10-2018 CLM_2991 60b826fab4fb1621c16dc50c0ef1146b 333 Gene3D G3DSA:1.20.1690.10 183 289 6.7E-53 T 13-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2991 60b826fab4fb1621c16dc50c0ef1146b 333 SUPERFAMILY SSF103486 6 329 1.44E-66 T 13-10-2018 IPR036079 V-type ATP synthase subunit C-like Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2991 60b826fab4fb1621c16dc50c0ef1146b 333 Pfam PF01992 ATP synthase (C/AC39) subunit 10 327 1.4E-60 T 13-10-2018 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2991 60b826fab4fb1621c16dc50c0ef1146b 333 Gene3D G3DSA:1.20.1690.10 81 182 6.7E-53 T 13-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2991 60b826fab4fb1621c16dc50c0ef1146b 333 Gene3D G3DSA:1.10.132.50 6 318 6.7E-53 T 13-10-2018 CLM_0094 ed439ca51ecb95586455beb52ac51ca0 386 Gene3D G3DSA:3.40.630.10 18 357 2.2E-86 T 13-10-2018 CLM_0094 ed439ca51ecb95586455beb52ac51ca0 386 SUPERFAMILY SSF53187 3 370 1.84E-43 T 13-10-2018 CLM_0094 ed439ca51ecb95586455beb52ac51ca0 386 PIRSF PIRSF037226 1 386 4.2E-95 T 13-10-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted CLM_0094 ed439ca51ecb95586455beb52ac51ca0 386 Gene3D G3DSA:3.30.70.360 162 278 2.2E-86 T 13-10-2018 CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 SUPERFAMILY SSF102114 94 416 4.45E-62 T 13-10-2018 CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 Pfam PF04055 Radical SAM superfamily 101 244 1.5E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 346 430 1.5E-21 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 Gene3D G3DSA:3.20.20.70 92 454 8.9E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 TIGRFAM TIGR03974 rSAM_six_Cys: SCIFF radical SAM maturase 4 449 4.3E-204 T 13-10-2018 IPR024025 SCIFF radical SAM maturase CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 Pfam PF13186 Iron-sulfur cluster-binding domain 346 407 1.1E-6 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 101 112 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_3469 2c3b2ea871dac2d2b5721b631d48316d 455 Pfam PF13353 4Fe-4S single cluster domain 101 220 2.7E-14 T 13-10-2018 CLM_1531 9ac9cd6f5d33e132722608bf2331de33 318 Gene3D G3DSA:1.10.3720.10 90 312 2.2E-13 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1531 9ac9cd6f5d33e132722608bf2331de33 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 318 1.9E-34 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1531 9ac9cd6f5d33e132722608bf2331de33 318 SUPERFAMILY SSF161098 96 305 2.14E-10 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1602 3990c3132611438e66604723c36aa37e 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 660 679 7.2E-12 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 690 708 7.2E-12 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 549 565 7.2E-12 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 630 649 7.2E-12 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 Gene3D G3DSA:3.40.50.300 34 164 4.1E-7 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 Gene3D G3DSA:3.40.50.300 202 439 4.7E-48 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 SUPERFAMILY SSF54211 547 741 1.14E-39 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1602 3990c3132611438e66604723c36aa37e 772 Pfam PF13654 AAA domain 35 524 1.5E-111 T 13-10-2018 CLM_1602 3990c3132611438e66604723c36aa37e 772 Gene3D G3DSA:3.30.230.10 525 764 9.1E-90 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1602 3990c3132611438e66604723c36aa37e 772 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 544 739 3.3E-16 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CLM_0908 7cc62678588e47259cd78ed3403aab0f 137 SMART SM00226 3 128 7.0E-19 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0908 7cc62678588e47259cd78ed3403aab0f 137 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 125 2.3E-14 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0908 7cc62678588e47259cd78ed3403aab0f 137 Gene3D G3DSA:3.40.50.2300 2 134 4.7E-35 T 13-10-2018 CLM_0908 7cc62678588e47259cd78ed3403aab0f 137 SUPERFAMILY SSF52788 1 126 1.31E-28 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLM_3397 12bb12bf9f128ba76b47bab208cc6103 285 PIRSF PIRSF038471 1 283 4.4E-86 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CLM_3397 12bb12bf9f128ba76b47bab208cc6103 285 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 278 4.4E-41 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CLM_3397 12bb12bf9f128ba76b47bab208cc6103 285 Gene3D G3DSA:2.40.10.350 178 259 1.9E-44 T 13-10-2018 CLM_3397 12bb12bf9f128ba76b47bab208cc6103 285 Pfam PF04085 rod shape-determining protein MreC 121 271 1.0E-39 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CLM_3397 12bb12bf9f128ba76b47bab208cc6103 285 Gene3D G3DSA:2.40.10.340 119 270 1.9E-44 T 13-10-2018 CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 Gene3D G3DSA:3.40.350.10 1 170 6.0E-55 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 Pfam PF00557 Metallopeptidase family M24 177 389 7.5E-60 T 13-10-2018 IPR000994 Peptidase M24 CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 Gene3D G3DSA:3.90.230.10 171 411 5.9E-91 T 13-10-2018 CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 SMART SM01011 1 135 7.8E-36 T 13-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 SUPERFAMILY SSF53092 2 171 1.92E-34 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 120 1.9E-27 T 13-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 CLM_0643 cbec05e881804ffb23c04001b94d3a36 411 SUPERFAMILY SSF55920 172 410 1.11E-71 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 Pfam PF01926 50S ribosome-binding GTPase 363 491 2.8E-19 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 Pfam PF16360 GTP-binding GTPase Middle Region 280 358 2.3E-29 T 13-10-2018 IPR032305 GTP-binding protein, middle domain CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 362 531 3.2E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 Gene3D G3DSA:3.40.50.300 361 538 4.9E-40 T 13-10-2018 CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 Gene3D G3DSA:3.40.50.11060 182 304 1.8E-39 T 13-10-2018 CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 Hamap MF_00900 GTPase HflX [hflX]. 193 563 47.776 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 Pfam PF13167 GTP-binding GTPase N-terminal 190 278 4.4E-32 T 13-10-2018 IPR025121 GTPase HflX, N-terminal CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 SUPERFAMILY SSF52540 362 560 4.4E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3485 46f6439dd82b2d099188ec013389f2d0 594 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 189 534 1.7E-139 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CLM_1007 452fcc708936055441105574e8034a78 148 SUPERFAMILY SSF55729 9 143 3.24E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1007 452fcc708936055441105574e8034a78 148 Pfam PF13673 Acetyltransferase (GNAT) domain 55 139 9.6E-14 T 13-10-2018 IPR000182 GNAT domain CLM_1007 452fcc708936055441105574e8034a78 148 Gene3D G3DSA:3.40.630.30 6 148 2.9E-28 T 13-10-2018 CLM_0456 c9b5610718be15bf19173e1b6e456fe8 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 272 6.9E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_0456 c9b5610718be15bf19173e1b6e456fe8 276 Gene3D G3DSA:1.10.3720.10 59 275 3.4E-30 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0456 c9b5610718be15bf19173e1b6e456fe8 276 SUPERFAMILY SSF161098 14 266 4.58E-33 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0456 c9b5610718be15bf19173e1b6e456fe8 276 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 13 274 1.2E-64 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 CLM_2700 689919d80b373d92c03176ab1a247f84 758 Pfam PF01580 FtsK/SpoIIIE family 529 583 2.2E-15 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CLM_2700 689919d80b373d92c03176ab1a247f84 758 Pfam PF01580 FtsK/SpoIIIE family 392 525 3.1E-45 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CLM_2700 689919d80b373d92c03176ab1a247f84 758 Gene3D G3DSA:3.30.980.40 283 387 3.5E-38 T 13-10-2018 CLM_2700 689919d80b373d92c03176ab1a247f84 758 SMART SM00843 681 746 2.3E-34 T 13-10-2018 IPR018541 FtsK gamma domain CLM_2700 689919d80b373d92c03176ab1a247f84 758 Pfam PF09397 Ftsk gamma domain 683 743 1.4E-27 T 13-10-2018 IPR018541 FtsK gamma domain CLM_2700 689919d80b373d92c03176ab1a247f84 758 SUPERFAMILY SSF46785 682 747 1.29E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2700 689919d80b373d92c03176ab1a247f84 758 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 40 176 2.2E-8 T 13-10-2018 IPR025199 DNA translocase FtsK, 4TM region CLM_2700 689919d80b373d92c03176ab1a247f84 758 Gene3D G3DSA:1.10.10.10 675 742 2.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2700 689919d80b373d92c03176ab1a247f84 758 Gene3D G3DSA:3.40.50.300 389 670 2.2E-108 T 13-10-2018 CLM_2700 689919d80b373d92c03176ab1a247f84 758 SMART SM00382 427 605 0.0041 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2700 689919d80b373d92c03176ab1a247f84 758 SUPERFAMILY SSF52540 365 653 9.74E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1013 c99f453f565eb0bd313b6c42d7b1f2fc 38 Pfam PF01638 HxlR-like helix-turn-helix 2 34 2.6E-7 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type CLM_1013 c99f453f565eb0bd313b6c42d7b1f2fc 38 SUPERFAMILY SSF46785 2 33 8.38E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1013 c99f453f565eb0bd313b6c42d7b1f2fc 38 Gene3D G3DSA:1.10.10.10 1 35 3.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2527 1ace374d65dd768ce36eb98f04f2d6b9 552 SUPERFAMILY SSF55486 321 535 5.35E-5 T 13-10-2018 CLM_2838 e33aebad8b01e9fcb5fb91d458e5b393 265 Pfam PF03419 Sporulation factor SpoIIGA 2 263 8.4E-65 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 CLM_2838 e33aebad8b01e9fcb5fb91d458e5b393 265 PIRSF PIRSF018571 1 265 1.6E-67 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 CLM_2838 e33aebad8b01e9fcb5fb91d458e5b393 265 TIGRFAM TIGR02854 spore_II_GA: sigma-E processing peptidase SpoIIGA 2 265 4.3E-72 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 CLM_3894 b759580f1203f235b03490c44a2bf879 364 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3894 b759580f1203f235b03490c44a2bf879 364 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 7 354 8.9E-153 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 CLM_3894 b759580f1203f235b03490c44a2bf879 364 Gene3D G3DSA:3.30.420.40 7 356 4.8E-146 T 13-10-2018 CLM_3894 b759580f1203f235b03490c44a2bf879 364 Gene3D G3DSA:3.30.420.40 139 333 4.8E-146 T 13-10-2018 CLM_3894 b759580f1203f235b03490c44a2bf879 364 SUPERFAMILY SSF53067 7 174 3.39E-67 T 13-10-2018 CLM_3894 b759580f1203f235b03490c44a2bf879 364 PIRSF PIRSF036458 4 357 1.2E-153 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 CLM_3894 b759580f1203f235b03490c44a2bf879 364 SUPERFAMILY SSF53067 121 347 1.75E-47 T 13-10-2018 CLM_3894 b759580f1203f235b03490c44a2bf879 364 PRINTS PR00471 Acetate kinase family signature 7 18 4.3E-19 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3894 b759580f1203f235b03490c44a2bf879 364 PRINTS PR00471 Acetate kinase family signature 275 288 4.3E-19 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3894 b759580f1203f235b03490c44a2bf879 364 PRINTS PR00471 Acetate kinase family signature 181 202 4.3E-19 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3894 b759580f1203f235b03490c44a2bf879 364 PRINTS PR00471 Acetate kinase family signature 298 314 4.3E-19 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3894 b759580f1203f235b03490c44a2bf879 364 Pfam PF00871 Acetokinase family 6 354 9.4E-64 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CLM_3894 b759580f1203f235b03490c44a2bf879 364 Hamap MF_00542 Probable butyrate kinase [buk]. 1 364 155.844 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 CLM_2579 407628b72668a8651c3fa4e5dc2053a2 233 SUPERFAMILY SSF52343 75 226 4.03E-11 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_2579 407628b72668a8651c3fa4e5dc2053a2 233 SUPERFAMILY SSF63380 3 67 1.81E-11 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_2579 407628b72668a8651c3fa4e5dc2053a2 233 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 196 204 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CLM_2579 407628b72668a8651c3fa4e5dc2053a2 233 PIRSF PIRSF006816 1 219 2.7E-30 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 CLM_2579 407628b72668a8651c3fa4e5dc2053a2 233 Gene3D G3DSA:2.40.30.10 1 66 2.9E-10 T 13-10-2018 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 263 608 3.0E-129 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 SUPERFAMILY SSF160544 500 606 3.14E-39 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 Gene3D G3DSA:3.40.1690.10 474 609 3.1E-54 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 Pfam PF01312 FlhB HrpN YscU SpaS Family 263 602 8.4E-130 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 Pfam PF01311 Bacterial export proteins, family 1 8 240 1.8E-56 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 464 482 1.1E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 557 578 1.1E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 484 501 1.1E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 288 1.1E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_3012 f321ac2ef55d1b0a8e67600e1bf54e97 609 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 528 543 1.1E-38 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_2732 fdf928cc079461f30338889418670047 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 499 7.8E-179 T 13-10-2018 IPR004482 Mg chelatase-related protein CLM_2732 fdf928cc079461f30338889418670047 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 142 9.8E-49 T 13-10-2018 CLM_2732 fdf928cc079461f30338889418670047 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 396 1.8E-87 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain CLM_2732 fdf928cc079461f30338889418670047 507 Gene3D G3DSA:3.40.50.300 176 505 1.4E-57 T 13-10-2018 CLM_2732 fdf928cc079461f30338889418670047 507 SUPERFAMILY SSF52540 189 499 1.98E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2732 fdf928cc079461f30338889418670047 507 Gene3D G3DSA:3.30.230.10 8 170 2.5E-15 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_2732 fdf928cc079461f30338889418670047 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 404 499 2.8E-29 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain CLM_2732 fdf928cc079461f30338889418670047 507 SUPERFAMILY SSF54211 9 167 2.77E-35 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1100 c5d8a70c0d5f526c23979b0135dd5940 243 Gene3D G3DSA:3.30.950.10 110 240 2.4E-48 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CLM_1100 c5d8a70c0d5f526c23979b0135dd5940 243 SUPERFAMILY SSF53790 1 240 4.32E-57 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_1100 c5d8a70c0d5f526c23979b0135dd5940 243 Gene3D G3DSA:3.40.1010.10 1 109 1.2E-31 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_1100 c5d8a70c0d5f526c23979b0135dd5940 243 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 4 239 1.0E-91 T 13-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 CLM_1100 c5d8a70c0d5f526c23979b0135dd5940 243 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 205 1.8E-39 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 Gene3D G3DSA:1.10.10.60 352 404 6.4E-15 T 13-10-2018 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 SUPERFAMILY SSF46689 355 403 1.25E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 15 280 1.3E-113 T 13-10-2018 IPR009215 TIM-barrel domain, IGPS-like CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 Gene3D G3DSA:3.20.20.70 5 260 1.9E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 SUPERFAMILY SSF46689 302 353 5.38E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 SMART SM00342 319 402 1.8E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 Gene3D G3DSA:1.10.10.60 299 351 3.2E-15 T 13-10-2018 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 SUPERFAMILY SSF51621 11 205 7.22E-73 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 Pfam PF12833 Helix-turn-helix domain 325 402 3.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1767 affac90864a3c27bd9b99e922da9ee81 405 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 356 398 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_1544 a0b552ffa935ba51ce50a2b4c6bc0a65 199 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1544 a0b552ffa935ba51ce50a2b4c6bc0a65 199 Pfam PF00005 ABC transporter 16 147 1.8E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1544 a0b552ffa935ba51ce50a2b4c6bc0a65 199 Gene3D G3DSA:3.40.50.300 1 199 2.8E-50 T 13-10-2018 CLM_1544 a0b552ffa935ba51ce50a2b4c6bc0a65 199 SUPERFAMILY SSF52540 4 195 5.09E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1544 a0b552ffa935ba51ce50a2b4c6bc0a65 199 SMART SM00382 25 197 5.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1546 0d7e41a927f23c4956735118cd631407 157 Gene3D G3DSA:1.10.10.10 33 83 2.9E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1546 0d7e41a927f23c4956735118cd631407 157 SUPERFAMILY SSF88659 36 78 6.92E-5 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_1546 0d7e41a927f23c4956735118cd631407 157 Pfam PF02001 Protein of unknown function DUF134 3 96 6.8E-23 T 13-10-2018 IPR002852 Uncharacterised protein family UPF0251 CLM_1546 0d7e41a927f23c4956735118cd631407 157 Hamap MF_00674 UPF0251 protein . 2 98 24.629 T 13-10-2018 IPR002852 Uncharacterised protein family UPF0251 CLM_0345 957a132e9a09bf4d53d719222e31b2fd 253 SUPERFAMILY SSF46689 10 73 3.94E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0345 957a132e9a09bf4d53d719222e31b2fd 253 Pfam PF01380 SIS domain 116 217 4.0E-12 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_0345 957a132e9a09bf4d53d719222e31b2fd 253 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 68 4.2E-10 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_0345 957a132e9a09bf4d53d719222e31b2fd 253 SUPERFAMILY SSF53697 87 252 1.32E-26 T 13-10-2018 CLM_0345 957a132e9a09bf4d53d719222e31b2fd 253 Gene3D G3DSA:3.40.50.10490 87 253 6.0E-28 T 13-10-2018 CLM_0345 957a132e9a09bf4d53d719222e31b2fd 253 Gene3D G3DSA:1.10.10.10 4 73 7.1E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0730 3fa529a18ea94c878ff634bfb67c0828 109 Pfam PF01588 Putative tRNA binding domain 12 107 1.4E-15 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CLM_0730 3fa529a18ea94c878ff634bfb67c0828 109 SUPERFAMILY SSF50249 1 108 1.22E-30 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0730 3fa529a18ea94c878ff634bfb67c0828 109 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 4 108 5.6E-49 T 13-10-2018 IPR008231 Probable chaperone CsaA CLM_0730 3fa529a18ea94c878ff634bfb67c0828 109 Gene3D G3DSA:2.40.50.140 1 109 2.3E-31 T 13-10-2018 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 Gene3D G3DSA:3.40.630.10 332 478 1.1E-23 T 13-10-2018 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PIRSF PIRSF016599 1 478 4.2E-191 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 SUPERFAMILY SSF53187 9 477 1.56E-59 T 13-10-2018 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 157 175 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 202 219 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 247 266 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 445 467 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 133 150 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 423 439 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 359 377 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 99 117 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 PRINTS PR00934 X-His dipeptidase (M25) signature 78 97 1.2E-50 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 Gene3D G3DSA:3.40.630.10 1 228 2.8E-61 T 13-10-2018 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 5 478 8.5E-186 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 Pfam PF07687 Peptidase dimerisation domain 202 286 5.3E-7 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_3264 edcb54747ab8c54b918b67c6172c38f1 478 Pfam PF01546 Peptidase family M20/M25/M40 71 476 4.2E-20 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_2335 df3193176528152a16d04bdacfc2675d 414 SUPERFAMILY SSF103473 10 402 4.05E-51 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_2335 df3193176528152a16d04bdacfc2675d 414 Gene3D G3DSA:1.20.1250.20 5 404 2.3E-41 T 13-10-2018 CLM_2335 df3193176528152a16d04bdacfc2675d 414 Pfam PF07690 Major Facilitator Superfamily 39 366 6.5E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_1682 b911eb1273085321813da0413b5a18fe 252 SMART SM00646 65 168 1.3E-17 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_1682 b911eb1273085321813da0413b5a18fe 252 Gene3D G3DSA:3.40.630.40 1 173 4.2E-58 T 13-10-2018 CLM_1682 b911eb1273085321813da0413b5a18fe 252 SUPERFAMILY SSF53187 1 169 3.77E-43 T 13-10-2018 CLM_1682 b911eb1273085321813da0413b5a18fe 252 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 167 2.1E-30 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3384 0787133806e48063434f6acb4f02889b 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3384 0787133806e48063434f6acb4f02889b 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 103 4.0E-39 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3384 0787133806e48063434f6acb4f02889b 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 104 27.96 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3384 0787133806e48063434f6acb4f02889b 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 102 5.8E-43 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3384 0787133806e48063434f6acb4f02889b 104 SUPERFAMILY SSF141091 1 103 2.75E-39 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1606 9af4b32e8f170161095f369913b068f0 592 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 383 403 7.7E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1606 9af4b32e8f170161095f369913b068f0 592 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 502 518 7.7E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1606 9af4b32e8f170161095f369913b068f0 592 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 421 437 7.7E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1606 9af4b32e8f170161095f369913b068f0 592 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 442 453 7.7E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1606 9af4b32e8f170161095f369913b068f0 592 Pfam PF03413 Peptidase propeptide and YPEB domain 148 212 3.9E-8 T 13-10-2018 IPR025711 PepSY domain CLM_1606 9af4b32e8f170161095f369913b068f0 592 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 433 584 1.1E-49 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 CLM_1606 9af4b32e8f170161095f369913b068f0 592 SUPERFAMILY SSF55486 258 585 2.01E-78 T 13-10-2018 CLM_1606 9af4b32e8f170161095f369913b068f0 592 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 85 133 1.0E-7 T 13-10-2018 IPR011096 FTP domain CLM_1606 9af4b32e8f170161095f369913b068f0 592 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 263 430 2.2E-46 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 CLM_1606 9af4b32e8f170161095f369913b068f0 592 Gene3D G3DSA:3.10.170.10 262 434 3.4E-39 T 13-10-2018 CLM_1606 9af4b32e8f170161095f369913b068f0 592 Gene3D G3DSA:1.10.390.10 435 584 2.7E-47 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 SUPERFAMILY SSF52540 1 227 6.84E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 493 172.94 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 Pfam PF13500 AAA domain 3 227 1.4E-20 T 13-10-2018 CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 248 437 6.4E-62 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 SUPERFAMILY SSF52317 247 432 5.69E-33 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 Gene3D G3DSA:3.40.50.880 247 433 1.8E-20 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 4 486 3.5E-165 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 CLM_1061 6c481b2297b7bebd4c7eb4147c4f54a1 493 Gene3D G3DSA:3.40.50.300 2 239 4.0E-54 T 13-10-2018 CLM_4059 e874754efa66c9e4b46adba64f2c5d0a 261 Gene3D G3DSA:3.60.15.10 5 245 4.9E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_4059 e874754efa66c9e4b46adba64f2c5d0a 261 SUPERFAMILY SSF56281 2 251 4.19E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_4059 e874754efa66c9e4b46adba64f2c5d0a 261 Pfam PF12706 Beta-lactamase superfamily domain 23 201 2.3E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_4059 e874754efa66c9e4b46adba64f2c5d0a 261 SMART SM00849 11 190 1.5E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0568 45087629300729c94e85800a59ad20dc 269 SUPERFAMILY SSF158430 131 262 5.76E-40 T 13-10-2018 CLM_0568 45087629300729c94e85800a59ad20dc 269 SUPERFAMILY SSF158430 11 129 2.49E-35 T 13-10-2018 CLM_0568 45087629300729c94e85800a59ad20dc 269 Pfam PF11155 Domain of unknown function (DUF2935) 132 249 4.1E-32 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 CLM_0568 45087629300729c94e85800a59ad20dc 269 Pfam PF11155 Domain of unknown function (DUF2935) 11 119 3.8E-26 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 CLM_0568 45087629300729c94e85800a59ad20dc 269 Gene3D G3DSA:1.20.1260.120 2 269 4.0E-89 T 13-10-2018 CLM_2257 7e918a1618b0da089061c00c0f82fd74 597 Gene3D G3DSA:3.50.50.60 10 142 1.1E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2257 7e918a1618b0da089061c00c0f82fd74 597 Gene3D G3DSA:3.50.50.60 469 548 3.0E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2257 7e918a1618b0da089061c00c0f82fd74 597 Gene3D G3DSA:3.30.9.80 334 468 3.9E-51 T 13-10-2018 CLM_2257 7e918a1618b0da089061c00c0f82fd74 597 Pfam PF06100 MCRA family 32 531 2.3E-201 T 13-10-2018 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 CLM_2257 7e918a1618b0da089061c00c0f82fd74 597 SUPERFAMILY SSF51905 37 274 3.6E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 Gene3D G3DSA:3.40.50.720 3 248 1.3E-94 T 13-10-2018 CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 7.3E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 7.3E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 7.3E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 SUPERFAMILY SSF51735 5 247 1.63E-94 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 6.4E-76 T 13-10-2018 CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.6E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.6E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 5.6E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.6E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.6E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.6E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 2.5E-6 T 13-10-2018 CLM_4092 fb18260c33ffdc5eada0ddf3c23cde72 248 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 246 2.6E-105 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 SMART SM00862 147 223 4.5E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 SUPERFAMILY SSF52172 4 177 5.27E-39 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 SMART SM00448 3 113 1.2E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 Gene3D G3DSA:3.40.50.2300 1 124 1.6E-35 T 13-10-2018 CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 Pfam PF00072 Response regulator receiver domain 5 114 7.9E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 Gene3D G3DSA:1.10.10.10 125 225 1.5E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0323 8ea0e99c0ed6a5336079717f28e6cc81 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 3.6E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0355 36ea34d02891730d1c85034fd92487b6 322 Gene3D G3DSA:3.90.550.10 3 202 3.6E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0355 36ea34d02891730d1c85034fd92487b6 322 SUPERFAMILY SSF53448 6 196 2.03E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0355 36ea34d02891730d1c85034fd92487b6 322 Pfam PF00535 Glycosyl transferase family 2 8 170 2.4E-36 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SUPERFAMILY SSF54211 481 595 7.33E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Gene3D G3DSA:3.30.70.240 601 671 1.4E-90 T 13-10-2018 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 TIGRFAM TIGR00484 EF-G: translation elongation factor G 4 689 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Gene3D G3DSA:2.40.30.10 292 404 3.9E-44 T 13-10-2018 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Gene3D G3DSA:3.30.230.10 483 684 1.4E-90 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Pfam PF14492 Elongation Factor G, domain II 403 477 1.3E-32 T 13-10-2018 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SMART SM00838 597 684 7.4E-59 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Pfam PF00009 Elongation factor Tu GTP binding domain 10 281 3.8E-68 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Gene3D G3DSA:3.30.70.870 405 482 1.1E-30 T 13-10-2018 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SMART SM00889 479 595 5.8E-69 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SUPERFAMILY SSF54980 600 687 4.8E-31 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 181 2.2E-37 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Pfam PF00679 Elongation factor G C-terminus 597 683 2.0E-31 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SUPERFAMILY SSF50447 264 403 7.83E-36 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Gene3D G3DSA:3.40.50.300 3 291 1.0E-111 T 13-10-2018 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 PRINTS PR00315 GTP-binding elongation factor signature 13 26 1.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 PRINTS PR00315 GTP-binding elongation factor signature 59 67 1.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Pfam PF03764 Elongation factor G, domain IV 478 594 3.0E-45 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Pfam PF03144 Elongation factor Tu domain 2 323 390 2.5E-15 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SUPERFAMILY SSF54980 401 479 7.55E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 Hamap MF_00054_B Elongation factor G [fusA]. 7 688 112.334 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CLM_3951 09c79e8532e4ae22d9d1e1d68530e5e8 689 SUPERFAMILY SSF52540 7 281 4.08E-111 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2902 c88e86749346892c95007f1c9922e924 413 Gene3D G3DSA:3.40.640.10 35 285 4.1E-190 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2902 c88e86749346892c95007f1c9922e924 413 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 220 236 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CLM_2902 c88e86749346892c95007f1c9922e924 413 Pfam PF00464 Serine hydroxymethyltransferase 6 382 1.5E-178 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CLM_2902 c88e86749346892c95007f1c9922e924 413 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 5 411 53.991 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CLM_2902 c88e86749346892c95007f1c9922e924 413 SUPERFAMILY SSF53383 5 411 7.53E-183 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2902 c88e86749346892c95007f1c9922e924 413 Gene3D G3DSA:3.90.1150.10 8 391 4.1E-190 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2902 c88e86749346892c95007f1c9922e924 413 PIRSF PIRSF000412 1 412 2.7E-169 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CLM_3229 a8ac1ca690cb00209e4cc1029d39f566 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 132 191 1.7E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CLM_3229 a8ac1ca690cb00209e4cc1029d39f566 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 190 1.9E-20 T 13-10-2018 CLM_3229 a8ac1ca690cb00209e4cc1029d39f566 223 SUPERFAMILY SSF56784 1 222 1.08E-40 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3229 a8ac1ca690cb00209e4cc1029d39f566 223 Gene3D G3DSA:1.10.150.240 16 92 1.2E-40 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLM_3229 a8ac1ca690cb00209e4cc1029d39f566 223 Gene3D G3DSA:3.40.50.1000 4 194 1.2E-40 T 13-10-2018 IPR023214 HAD superfamily CLM_3619 765c4ba8c4d5fd7f66b308a5b04c6629 50 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 12 44 1.6E-4 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 SUPERFAMILY SSF52540 3 241 3.59E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 SUPERFAMILY SSF50331 236 357 3.97E-15 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 Pfam PF00005 ABC transporter 19 160 5.5E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 SMART SM00382 27 210 3.9E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 Gene3D G3DSA:2.40.50.100 239 355 3.9E-12 T 13-10-2018 CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 Gene3D G3DSA:3.40.50.300 1 237 2.5E-77 T 13-10-2018 CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1750 dea9020430acda7c8bb4e4ec2fcbeecd 365 Gene3D G3DSA:2.40.50.140 282 342 3.9E-12 T 13-10-2018 CLM_1996 c21419b587da097912a2fa6e10f878b6 138 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 1 128 1.9E-17 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CLM_1996 c21419b587da097912a2fa6e10f878b6 138 Gene3D G3DSA:3.40.50.1450 1 136 3.0E-15 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CLM_1996 c21419b587da097912a2fa6e10f878b6 138 Pfam PF01750 Hydrogenase maturation protease 9 127 8.8E-6 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CLM_1996 c21419b587da097912a2fa6e10f878b6 138 SUPERFAMILY SSF53163 1 135 6.28E-19 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 Pfam PF00664 ABC transporter transmembrane region 28 291 1.0E-17 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 Gene3D G3DSA:3.40.50.300 341 593 4.9E-85 T 13-10-2018 CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 SUPERFAMILY SSF52540 340 587 6.66E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 SMART SM00382 377 570 7.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 Pfam PF00005 ABC transporter 368 517 3.1E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 SUPERFAMILY SSF90123 3 335 2.88E-47 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1206 38bf253a8d7f29fb8c3d885d79b67746 600 Gene3D G3DSA:1.20.1560.10 1 333 8.7E-42 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 232 1.9E-73 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 Pfam PF01259 SAICAR synthetase 7 231 6.4E-68 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 Gene3D G3DSA:3.30.200.20 7 231 4.8E-96 T 13-10-2018 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 32.608 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 Gene3D G3DSA:3.30.470.20 85 220 4.8E-96 T 13-10-2018 CLM_3274 f69c486fec578786576c4e2702d2ff82 234 SUPERFAMILY SSF56104 3 232 2.65E-82 T 13-10-2018 CLM_0445 88d02d112745dc073cd02029e5cf190e 344 SUPERFAMILY SSF143631 29 332 2.62E-98 T 13-10-2018 IPR003374 ApbE-like superfamily CLM_0445 88d02d112745dc073cd02029e5cf190e 344 Gene3D G3DSA:3.10.520.20 22 343 9.8E-117 T 13-10-2018 CLM_0445 88d02d112745dc073cd02029e5cf190e 344 PIRSF PIRSF006268 2 337 8.9E-111 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 CLM_0445 88d02d112745dc073cd02029e5cf190e 344 Pfam PF02424 ApbE family 37 315 7.2E-86 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 CLM_3087 4717d84a3cffae075ac51ceebd5ee9a7 251 Pfam PF02348 Cytidylyltransferase 5 217 7.9E-32 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 CLM_3087 4717d84a3cffae075ac51ceebd5ee9a7 251 SUPERFAMILY SSF53448 1 217 9.15E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3087 4717d84a3cffae075ac51ceebd5ee9a7 251 Gene3D G3DSA:3.90.550.10 1 223 5.6E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 Gene3D G3DSA:3.40.50.2300 1 127 4.2E-38 T 13-10-2018 CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 Gene3D G3DSA:1.10.10.10 128 221 6.5E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 SUPERFAMILY SSF52172 3 176 1.06E-40 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 219 3.7E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 Pfam PF00072 Response regulator receiver domain 5 114 1.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 SMART SM00862 148 219 4.5E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2186 e595eeb324d4d04d3b86c844bd294510 221 SMART SM00448 3 113 1.4E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0499 8f51bbf8470bc08f7388d8fda87afbb6 260 Gene3D G3DSA:3.40.50.300 18 260 6.3E-76 T 13-10-2018 CLM_0499 8f51bbf8470bc08f7388d8fda87afbb6 260 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0499 8f51bbf8470bc08f7388d8fda87afbb6 260 PIRSF PIRSF039085 17 260 1.7E-114 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CLM_0499 8f51bbf8470bc08f7388d8fda87afbb6 260 SMART SM00382 45 233 2.0E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0499 8f51bbf8470bc08f7388d8fda87afbb6 260 SUPERFAMILY SSF52540 20 255 2.86E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0499 8f51bbf8470bc08f7388d8fda87afbb6 260 Pfam PF00005 ABC transporter 37 185 3.4E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0701 6bae1a13ed26e619e7887ab82510035b 170 Hamap MF_01515 UPF0316 protein . 2 170 27.456 T 13-10-2018 IPR022930 Protein of unknown function UPF0316 CLM_0701 6bae1a13ed26e619e7887ab82510035b 170 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 113 164 1.4E-7 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 CLM_2410 2a6b5997145e7a3eaeb38ce8cb2bad95 445 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 258 429 3.2E-27 T 13-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain CLM_2410 2a6b5997145e7a3eaeb38ce8cb2bad95 445 Gene3D G3DSA:3.40.50.10840 4 225 6.8E-56 T 13-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily CLM_2410 2a6b5997145e7a3eaeb38ce8cb2bad95 445 Gene3D G3DSA:3.40.980.20 247 436 1.8E-12 T 13-10-2018 CLM_2410 2a6b5997145e7a3eaeb38ce8cb2bad95 445 SUPERFAMILY SSF142764 5 438 1.83E-82 T 13-10-2018 CLM_2410 2a6b5997145e7a3eaeb38ce8cb2bad95 445 Pfam PF07005 Putative sugar-binding N-terminal domain 5 229 1.6E-51 T 13-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain CLM_2436 18bbba5b1ef9322fd5fb0fd68a8a0b8b 113 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 55 108 8.3E-6 T 13-10-2018 IPR008792 Coenzyme PQQ synthesis D CLM_1090 2f6f60b24bc66acd4273be7c39917a71 193 Pfam PF13847 Methyltransferase domain 32 160 2.1E-11 T 13-10-2018 IPR025714 Methyltransferase domain CLM_1090 2f6f60b24bc66acd4273be7c39917a71 193 SUPERFAMILY SSF53335 6 160 1.29E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1090 2f6f60b24bc66acd4273be7c39917a71 193 Gene3D G3DSA:3.40.50.150 2 192 1.1E-61 T 13-10-2018 CLM_1090 2f6f60b24bc66acd4273be7c39917a71 193 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 37 66 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 CLM_1090 2f6f60b24bc66acd4273be7c39917a71 193 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 15 138 6.2E-37 T 13-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 CLM_2975 ace1f149e0c982e856610528070127f4 328 SUPERFAMILY SSF56112 16 288 1.3E-18 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_2975 ace1f149e0c982e856610528070127f4 328 Pfam PF01636 Phosphotransferase enzyme family 28 236 2.1E-10 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CLM_2975 ace1f149e0c982e856610528070127f4 328 Gene3D G3DSA:3.30.200.20 5 103 4.4E-6 T 13-10-2018 CLM_1124 2aa2f7a18670c7bb726461caa09ca5b8 96 SUPERFAMILY SSF103481 11 82 8.76E-5 T 13-10-2018 CLM_1124 2aa2f7a18670c7bb726461caa09ca5b8 96 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 78 2.8E-10 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CLM_2590 be899af44dd4687d5d19872b8a6392f5 248 Pfam PF12730 ABC-2 family transporter protein 5 177 1.4E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_3018 f1303245b8dc098870ff16cb35d7d723 270 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 188 205 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site CLM_3018 f1303245b8dc098870ff16cb35d7d723 270 Pfam PF01618 MotA/TolQ/ExbB proton channel family 104 218 1.7E-25 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CLM_0112 1841d771785254c66593e3718c504711 289 Pfam PF01522 Polysaccharide deacetylase 121 245 8.0E-35 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_0112 1841d771785254c66593e3718c504711 289 Gene3D G3DSA:3.20.20.370 62 284 2.6E-79 T 13-10-2018 CLM_0112 1841d771785254c66593e3718c504711 289 SUPERFAMILY SSF88713 84 267 5.68E-50 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_0879 d3ba77992b1056763ad007d8fdc1a074 140 SUPERFAMILY SSF47413 1 64 3.49E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0879 d3ba77992b1056763ad007d8fdc1a074 140 SMART SM00530 6 62 4.2E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0879 d3ba77992b1056763ad007d8fdc1a074 140 Gene3D G3DSA:1.10.260.40 3 139 6.4E-19 T 13-10-2018 CLM_0879 d3ba77992b1056763ad007d8fdc1a074 140 Pfam PF01381 Helix-turn-helix 8 62 1.2E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3123 bc4e8db23adbf87a95757d34e4732726 213 SUPERFAMILY SSF56784 3 201 2.0E-24 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3123 bc4e8db23adbf87a95757d34e4732726 213 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 192 5.0E-33 T 13-10-2018 CLM_3123 bc4e8db23adbf87a95757d34e4732726 213 Gene3D G3DSA:1.20.1440.100 16 88 2.6E-39 T 13-10-2018 CLM_3123 bc4e8db23adbf87a95757d34e4732726 213 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 4 203 1.4E-59 T 13-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like CLM_3123 bc4e8db23adbf87a95757d34e4732726 213 Gene3D G3DSA:3.40.50.1000 4 204 2.6E-39 T 13-10-2018 IPR023214 HAD superfamily CLM_3123 bc4e8db23adbf87a95757d34e4732726 213 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 190 4.2E-25 T 13-10-2018 CLM_0319 0de587a9e95092769ac09e73eaab74ed 67 Pfam PF07870 Protein of unknown function (DUF1657) 8 55 2.8E-18 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 SMART SM00283 397 672 6.3E-68 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 SUPERFAMILY SSF58104 336 672 1.57E-67 T 13-10-2018 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 Gene3D G3DSA:1.20.1480.50 282 373 4.8E-13 T 13-10-2018 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 SUPERFAMILY SSF103190 167 292 7.46E-20 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 Pfam PF17203 Single cache domain 3 190 292 2.0E-13 T 13-10-2018 IPR033463 Single cache domain 3 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 SMART SM00304 316 368 7.2E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 Gene3D G3DSA:1.10.287.950 408 672 3.2E-62 T 13-10-2018 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 Pfam PF00672 HAMP domain 319 365 5.0E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 444 618 2.4E-42 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1975 573a59b4a8a6e2f7f768454e2c14b56c 673 Gene3D G3DSA:3.30.450.20 175 281 1.3E-7 T 13-10-2018 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 Hamap MF_00815 ATP synthase gamma chain [atpG]. 3 281 29.146 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 Pfam PF00231 ATP synthase 8 280 2.4E-81 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 SUPERFAMILY SSF52943 5 280 3.4E-76 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 Gene3D G3DSA:3.40.1380.10 62 200 6.4E-84 T 13-10-2018 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 Gene3D G3DSA:1.10.287.80 9 277 6.4E-84 T 13-10-2018 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 PRINTS PR00126 ATP synthase gamma subunit signature 228 247 2.9E-29 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 PRINTS PR00126 ATP synthase gamma subunit signature 164 181 2.9E-29 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 PRINTS PR00126 ATP synthase gamma subunit signature 259 280 2.9E-29 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 PRINTS PR00126 ATP synthase gamma subunit signature 74 93 2.9E-29 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 267 280 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0199 c66c21e86c0d8c85c828779c84927e06 282 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 6 280 6.0E-78 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0110 9b9dab5b2d83469e4c505331f2c6436e 155 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CLM_0110 9b9dab5b2d83469e4c505331f2c6436e 155 Pfam PF02542 YgbB family 1 154 1.2E-65 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CLM_0110 9b9dab5b2d83469e4c505331f2c6436e 155 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 155 34.028 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CLM_0110 9b9dab5b2d83469e4c505331f2c6436e 155 SUPERFAMILY SSF69765 1 154 6.54E-65 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CLM_0110 9b9dab5b2d83469e4c505331f2c6436e 155 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 154 1.3E-66 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CLM_0110 9b9dab5b2d83469e4c505331f2c6436e 155 Gene3D G3DSA:3.30.1330.50 1 155 3.1E-66 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CLM_2213 1326194534c5a2fb70500ee9308d1bcc 131 SUPERFAMILY SSF55298 7 131 4.38E-24 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_2213 1326194534c5a2fb70500ee9308d1bcc 131 Gene3D G3DSA:3.30.1330.40 10 131 2.7E-20 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_2213 1326194534c5a2fb70500ee9308d1bcc 131 Pfam PF01042 Endoribonuclease L-PSP 16 130 6.1E-17 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CLM_3743 577b039e185682c7d040f326a1899c9e 544 SUPERFAMILY SSF55874 405 540 2.49E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3743 577b039e185682c7d040f326a1899c9e 544 SMART SM00387 437 543 7.0E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3743 577b039e185682c7d040f326a1899c9e 544 Pfam PF07694 5TMR of 5TMR-LYT 24 188 9.9E-53 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 CLM_3743 577b039e185682c7d040f326a1899c9e 544 Pfam PF06580 Histidine kinase 348 426 3.6E-28 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 CLM_3743 577b039e185682c7d040f326a1899c9e 544 Gene3D G3DSA:1.10.1760.20 29 199 3.6E-5 T 13-10-2018 CLM_3743 577b039e185682c7d040f326a1899c9e 544 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 446 542 1.7E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3743 577b039e185682c7d040f326a1899c9e 544 Gene3D G3DSA:3.30.565.10 404 543 2.8E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 Gene3D G3DSA:3.20.20.80 2 473 5.4E-156 T 13-10-2018 CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 369 377 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 Pfam PF00232 Glycosyl hydrolase family 1 5 472 4.8E-136 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 SUPERFAMILY SSF51445 3 472 2.32E-159 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 PRINTS PR00131 Glycosyl hydrolase family 1 signature 390 401 1.1E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 PRINTS PR00131 Glycosyl hydrolase family 1 signature 369 377 1.1E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 PRINTS PR00131 Glycosyl hydrolase family 1 signature 303 317 1.1E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 PRINTS PR00131 Glycosyl hydrolase family 1 signature 412 429 1.1E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1021 5f69e52257fe09eb5e81ca5b7b2c387c 473 PRINTS PR00131 Glycosyl hydrolase family 1 signature 437 449 1.1E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_3016 8539e8325807d1b10e29d97d6ff49aba 173 Pfam PF03748 Flagellar basal body-associated protein FliL 79 173 1.1E-19 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 CLM_3929 76092296c5b170ca4d630141d0e61921 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 7.6E-41 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P CLM_3929 76092296c5b170ca4d630141d0e61921 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 146 22.849 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 CLM_3929 76092296c5b170ca4d630141d0e61921 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3929 76092296c5b170ca4d630141d0e61921 146 SUPERFAMILY SSF52080 4 144 2.09E-51 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily CLM_3929 76092296c5b170ca4d630141d0e61921 146 Gene3D G3DSA:3.100.10.10 66 146 1.2E-27 T 13-10-2018 CLM_3929 76092296c5b170ca4d630141d0e61921 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 144 2.5E-56 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1615 ae37550bde8920d872b7dda565509845 73 Pfam PF01381 Helix-turn-helix 1 55 2.5E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1615 ae37550bde8920d872b7dda565509845 73 Gene3D G3DSA:1.10.260.40 1 68 2.2E-16 T 13-10-2018 CLM_1615 ae37550bde8920d872b7dda565509845 73 SUPERFAMILY SSF47413 1 58 2.57E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1615 ae37550bde8920d872b7dda565509845 73 SMART SM00530 1 56 3.9E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 SUPERFAMILY SSF53474 3 269 5.19E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0988 10b43859ac6abb279d1953a2e750c995 270 Gene3D G3DSA:3.40.50.1820 1 269 2.6E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 2.8E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 214 228 2.8E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 2.8E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 Pfam PF00561 alpha/beta hydrolase fold 25 131 5.2E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00412 Epoxide hydrolase signature 245 267 1.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00412 Epoxide hydrolase signature 30 48 1.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00412 Epoxide hydrolase signature 50 65 1.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CLM_0988 10b43859ac6abb279d1953a2e750c995 270 PRINTS PR00412 Epoxide hydrolase signature 212 228 1.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CLM_1477 985fb745a0d786f299201a6456ed508a 40 Pfam PF09693 Phage uncharacterised protein (Phage_XkdX) 5 37 9.9E-9 T 13-10-2018 IPR010022 Protein of unknown function XkdX CLM_2407 b814b326829600cf27201faba9ad6d5a 137 Gene3D G3DSA:3.10.180.10 1 136 5.0E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_2407 b814b326829600cf27201faba9ad6d5a 137 SUPERFAMILY SSF54593 1 122 1.51E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_2407 b814b326829600cf27201faba9ad6d5a 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 119 1.4E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 SMART SM01390 3 87 1.0E-28 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 SUPERFAMILY SSF55174 5 197 9.29E-60 T 13-10-2018 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 Gene3D G3DSA:3.10.290.10 87 182 1.5E-67 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 Gene3D G3DSA:1.10.1050.10 6 197 1.5E-67 T 13-10-2018 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 Pfam PF01479 S4 domain 89 135 2.4E-20 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 ProSitePatterns PS00632 Ribosomal protein S4 signature. 86 110 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 4 197 3.8E-66 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 4 87 6.7E-21 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 SMART SM00363 88 153 1.5E-18 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3869 6f6b3250a3e6d240403b9da5d955211b 197 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 197 30.741 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_2092 df35f022e252e9241ba75adb6ee1963b 426 SUPERFAMILY SSF53383 7 423 1.11E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2092 df35f022e252e9241ba75adb6ee1963b 426 PIRSF PIRSF001434 1 426 6.7E-123 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_2092 df35f022e252e9241ba75adb6ee1963b 426 Gene3D G3DSA:3.90.1150.10 292 426 6.4E-47 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2092 df35f022e252e9241ba75adb6ee1963b 426 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 8 423 2.5E-182 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 CLM_2092 df35f022e252e9241ba75adb6ee1963b 426 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 423 8.7E-130 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_2092 df35f022e252e9241ba75adb6ee1963b 426 Gene3D G3DSA:3.40.640.10 7 288 1.0E-89 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3803 074ecb4ab0eaf5e8116b74aa60e0e567 297 Gene3D G3DSA:3.30.420.40 110 281 2.7E-63 T 13-10-2018 CLM_3803 074ecb4ab0eaf5e8116b74aa60e0e567 297 Gene3D G3DSA:3.30.420.40 4 292 2.7E-63 T 13-10-2018 CLM_3803 074ecb4ab0eaf5e8116b74aa60e0e567 297 SUPERFAMILY SSF53067 111 296 3.56E-44 T 13-10-2018 CLM_3803 074ecb4ab0eaf5e8116b74aa60e0e567 297 SUPERFAMILY SSF53067 1 106 5.46E-17 T 13-10-2018 CLM_3803 074ecb4ab0eaf5e8116b74aa60e0e567 297 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 289 4.9E-25 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 SUPERFAMILY SSF56752 5 337 4.71E-105 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 ProSitePatterns PS00770 Aminotransferases class-IV signature. 221 250 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 PIRSF PIRSF006468 1 341 6.2E-123 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 Gene3D G3DSA:3.30.470.10 1 161 1.0E-59 T 13-10-2018 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 32 340 1.1E-139 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 Gene3D G3DSA:3.20.10.10 162 341 5.2E-56 T 13-10-2018 CLM_1051 b24beb34fe51f5e34690a836c71e5cb5 341 Pfam PF01063 Amino-transferase class IV 57 294 1.0E-36 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 CLM_0912 6e71b9a46ece4c84fbbb48d72a633cfa 217 SUPERFAMILY SSF53335 38 213 2.11E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0912 6e71b9a46ece4c84fbbb48d72a633cfa 217 Gene3D G3DSA:3.40.50.150 63 217 3.5E-39 T 13-10-2018 CLM_0912 6e71b9a46ece4c84fbbb48d72a633cfa 217 Pfam PF13847 Methyltransferase domain 90 214 6.7E-33 T 13-10-2018 IPR025714 Methyltransferase domain CLM_0170 e463acf9a9f2e49f8270feeb7ff1a5f8 413 SUPERFAMILY SSF53756 90 366 2.51E-34 T 13-10-2018 CLM_0170 e463acf9a9f2e49f8270feeb7ff1a5f8 413 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 206 341 1.9E-10 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CLM_0170 e463acf9a9f2e49f8270feeb7ff1a5f8 413 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 14 180 8.1E-47 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 CLM_0170 e463acf9a9f2e49f8270feeb7ff1a5f8 413 Gene3D G3DSA:3.40.50.2000 188 354 9.0E-30 T 13-10-2018 CLM_0446 08b7e28b2302367657bd497b4f915181 1383 Pfam PF04122 Putative cell wall binding repeat 2 37 123 1.0E-19 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0446 08b7e28b2302367657bd497b4f915181 1383 Pfam PF04122 Putative cell wall binding repeat 2 136 226 7.0E-13 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0446 08b7e28b2302367657bd497b4f915181 1383 Pfam PF04122 Putative cell wall binding repeat 2 238 330 4.8E-15 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0446 08b7e28b2302367657bd497b4f915181 1383 Gene3D G3DSA:2.60.40.1220 848 941 1.1E-6 T 13-10-2018 CLM_0446 08b7e28b2302367657bd497b4f915181 1383 Gene3D G3DSA:3.40.50.12090 59 153 1.1E-12 T 13-10-2018 CLM_1939 52b3d71edcf1e3da3699d51ef36875f4 1482 Pfam PF07532 Bacterial Ig-like domain (group 4) 669 723 1.8E-12 T 13-10-2018 IPR011081 Bacterial Ig-related CLM_1939 52b3d71edcf1e3da3699d51ef36875f4 1482 SUPERFAMILY SSF63825 346 533 1.44E-7 T 13-10-2018 CLM_1939 52b3d71edcf1e3da3699d51ef36875f4 1482 Pfam PF16472 Domain of unknown function (DUF5050) 488 629 1.6E-24 T 13-10-2018 IPR032485 Domain of unknown function DUF5050 CLM_1939 52b3d71edcf1e3da3699d51ef36875f4 1482 Pfam PF16472 Domain of unknown function (DUF5050) 341 458 1.5E-26 T 13-10-2018 IPR032485 Domain of unknown function DUF5050 CLM_1939 52b3d71edcf1e3da3699d51ef36875f4 1482 SUPERFAMILY SSF63825 495 629 3.14E-5 T 13-10-2018 CLM_2427 3fb645ba35ab4939c47610422c39b57c 281 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 257 6.0E-18 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLM_2427 3fb645ba35ab4939c47610422c39b57c 281 Pfam PF00037 4Fe-4S binding domain 61 83 5.7E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2427 3fb645ba35ab4939c47610422c39b57c 281 Pfam PF00037 4Fe-4S binding domain 86 108 3.1E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2427 3fb645ba35ab4939c47610422c39b57c 281 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 92 103 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2427 3fb645ba35ab4939c47610422c39b57c 281 Gene3D G3DSA:3.30.70.20 62 110 7.9E-9 T 13-10-2018 CLM_2427 3fb645ba35ab4939c47610422c39b57c 281 SUPERFAMILY SSF52540 4 279 3.72E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3900 6beb194edc7f0bebad32714225622e7e 287 Gene3D G3DSA:3.50.50.60 115 220 1.8E-68 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 54 3.9E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 3.9E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 125 137 3.9E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 264 3.9E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 59 69 3.9E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 104 112 3.9E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 Gene3D G3DSA:3.50.50.60 7 278 1.8E-68 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 258 2.5E-16 T 13-10-2018 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.5E-16 T 13-10-2018 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.5E-16 T 13-10-2018 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 2.5E-16 T 13-10-2018 CLM_3900 6beb194edc7f0bebad32714225622e7e 287 SUPERFAMILY SSF51905 3 284 3.43E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3900 6beb194edc7f0bebad32714225622e7e 287 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 268 2.3E-21 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_3091 20cff2dfd12aaf70926616b21283f100 341 SUPERFAMILY SSF51735 1 269 2.66E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3091 20cff2dfd12aaf70926616b21283f100 341 Pfam PF02719 Polysaccharide biosynthesis protein 9 293 9.1E-104 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CLM_3091 20cff2dfd12aaf70926616b21283f100 341 Gene3D G3DSA:3.40.50.720 6 319 2.8E-123 T 13-10-2018 CLM_3091 20cff2dfd12aaf70926616b21283f100 341 Gene3D G3DSA:3.90.25.30 171 332 2.8E-123 T 13-10-2018 CLM_0620 6c94be9f4353894390b50d570f3533a2 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 1.1E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0620 6c94be9f4353894390b50d570f3533a2 228 SUPERFAMILY SSF52172 1 175 6.88E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0620 6c94be9f4353894390b50d570f3533a2 228 Gene3D G3DSA:1.10.10.10 129 228 2.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0620 6c94be9f4353894390b50d570f3533a2 228 SMART SM00862 147 222 3.0E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0620 6c94be9f4353894390b50d570f3533a2 228 SMART SM00448 2 113 1.4E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0620 6c94be9f4353894390b50d570f3533a2 228 Pfam PF00072 Response regulator receiver domain 4 113 2.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0620 6c94be9f4353894390b50d570f3533a2 228 Gene3D G3DSA:3.40.50.12740 2 128 7.0E-33 T 13-10-2018 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 Gene3D G3DSA:3.40.50.2030 435 650 1.8E-75 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 Gene3D G3DSA:3.40.50.2030 258 432 2.2E-53 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 Gene3D G3DSA:1.20.1270.30 85 257 4.7E-51 T 13-10-2018 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 Pfam PF03063 Prismane/CO dehydrogenase family 70 633 1.3E-136 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 30 653 5.1E-273 T 13-10-2018 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 SUPERFAMILY SSF56821 18 653 1.68E-182 T 13-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 CLM_2421 d5ba43f1be590e7add9e1670cdac5121 654 PIRSF PIRSF005023 19 654 1.2E-253 T 13-10-2018 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 CLM_1205 b327a3cad0e8d701726c599044344af4 333 SUPERFAMILY SSF46689 282 330 1.84E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1205 b327a3cad0e8d701726c599044344af4 333 SMART SM00342 245 328 8.9E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1205 b327a3cad0e8d701726c599044344af4 333 Pfam PF12833 Helix-turn-helix domain 251 329 6.9E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_1205 b327a3cad0e8d701726c599044344af4 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 1.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1205 b327a3cad0e8d701726c599044344af4 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 1.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_1205 b327a3cad0e8d701726c599044344af4 333 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 282 324 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_1205 b327a3cad0e8d701726c599044344af4 333 Gene3D G3DSA:1.10.10.60 227 332 3.1E-23 T 13-10-2018 CLM_2173 15e25862f75b75efe66ea43f203f9db7 208 Pfam PF03358 NADPH-dependent FMN reductase 1 152 7.3E-30 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_2173 15e25862f75b75efe66ea43f203f9db7 208 Gene3D G3DSA:3.40.50.360 1 193 1.6E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2173 15e25862f75b75efe66ea43f203f9db7 208 SUPERFAMILY SSF52218 1 185 4.04E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2056 e86b2b9dcad6ec4cdf2dcf877d23e806 416 Gene3D G3DSA:2.40.500.30 65 172 1.7E-7 T 13-10-2018 CLM_2056 e86b2b9dcad6ec4cdf2dcf877d23e806 416 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 39 376 1.3E-89 T 13-10-2018 IPR006427 Phage portal protein, HK97 CLM_2056 e86b2b9dcad6ec4cdf2dcf877d23e806 416 Gene3D G3DSA:3.30.1120.70 205 258 1.7E-7 T 13-10-2018 CLM_2056 e86b2b9dcad6ec4cdf2dcf877d23e806 416 Pfam PF04860 Phage portal protein 50 373 3.0E-96 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein CLM_2056 e86b2b9dcad6ec4cdf2dcf877d23e806 416 Gene3D G3DSA:1.20.1270.210 40 310 1.7E-7 T 13-10-2018 CLM_2917 6799c009a283b28d3c4caf90b69f5128 67 ProDom PD019268 UVIB BACTERIOCIN BHLA PLASMID ANTIBIOTIC HOLIN-LIKE PRECURSOR ANTIMICROBIAL SIGNAL PROPHAGE-DERIVED 1 61 2.0E-6 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_2917 6799c009a283b28d3c4caf90b69f5128 67 Pfam PF10960 BhlA holin family 1 61 2.8E-20 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_1680 6799c009a283b28d3c4caf90b69f5128 67 ProDom PD019268 UVIB BACTERIOCIN BHLA PLASMID ANTIBIOTIC HOLIN-LIKE PRECURSOR ANTIMICROBIAL SIGNAL PROPHAGE-DERIVED 1 61 2.0E-6 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_1680 6799c009a283b28d3c4caf90b69f5128 67 Pfam PF10960 BhlA holin family 1 61 2.8E-20 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_3918 241b6af0defb6b21c0e0f235eba5301e 113 Gene3D G3DSA:3.90.1030.10 2 113 1.6E-49 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3918 241b6af0defb6b21c0e0f235eba5301e 113 SUPERFAMILY SSF64263 3 113 1.57E-46 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3918 241b6af0defb6b21c0e0f235eba5301e 113 ProSitePatterns PS01167 Ribosomal protein L17 signature. 31 53 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3918 241b6af0defb6b21c0e0f235eba5301e 113 Pfam PF01196 Ribosomal protein L17 17 113 2.1E-40 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3918 241b6af0defb6b21c0e0f235eba5301e 113 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 2 113 29.097 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3918 241b6af0defb6b21c0e0f235eba5301e 113 TIGRFAM TIGR00059 L17: ribosomal protein bL17 3 113 6.4E-48 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 4 396 55.584 T 13-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 205 400 43.166 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 9 199 8.1E-85 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 213 398 1.0E-83 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 200 1.4E-78 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 PIRSF PIRSF001259 3 401 1.7E-184 T 13-10-2018 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Gene3D G3DSA:3.40.50.10990 207 378 7.3E-78 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Gene3D G3DSA:3.90.870.10 1 206 5.2E-88 T 13-10-2018 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 3 204 38.573 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 Pfam PF00925 GTP cyclohydrolase II 213 374 2.0E-75 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 SUPERFAMILY SSF55821 3 203 2.52E-84 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLM_3260 290e9f0a76a54be889cb72914c5c5796 401 SUPERFAMILY SSF142695 205 375 3.01E-72 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CLM_2323 8e9b484f8a9f47c1770fc2ca4dd724cd 148 Gene3D G3DSA:3.40.50.300 1 148 1.3E-15 T 13-10-2018 CLM_2323 8e9b484f8a9f47c1770fc2ca4dd724cd 148 PIRSF PIRSF036409 3 148 2.6E-55 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CLM_2323 8e9b484f8a9f47c1770fc2ca4dd724cd 148 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 4 142 4.5E-32 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CLM_2323 8e9b484f8a9f47c1770fc2ca4dd724cd 148 SUPERFAMILY SSF52540 5 144 1.73E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 Gene3D G3DSA:3.40.630.30 153 283 3.5E-14 T 13-10-2018 CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 Gene3D G3DSA:1.10.10.10 2 133 3.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 Pfam PF12802 MarR family 28 86 1.9E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 SMART SM00347 23 125 2.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 Pfam PF13673 Acetyltransferase (GNAT) domain 168 282 3.4E-8 T 13-10-2018 IPR000182 GNAT domain CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 SUPERFAMILY SSF55729 154 285 3.72E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_2337 d6e3d015cf38cd4042473b85e18d1da8 299 SUPERFAMILY SSF46785 21 117 1.04E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Gene3D G3DSA:2.120.10.90 744 947 2.6E-24 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Gene3D G3DSA:2.120.10.90 512 743 7.3E-45 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 37 483 2.9E-143 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Gene3D G3DSA:3.90.199.10 37 496 3.9E-192 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 SMART SM00434 16 476 7.5E-218 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 SUPERFAMILY SSF101904 724 945 4.97E-28 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Gene3D G3DSA:1.10.268.10 381 470 3.9E-192 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 517 558 1.0 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 564 595 1.2 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 858 903 1.1E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 622 660 0.0038 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 SUPERFAMILY SSF101904 512 737 2.09E-46 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 SUPERFAMILY SSF56719 36 499 2.75E-164 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CLM_3137 cb2740e7b0c5e06bf9230a96e748e11e 956 Gene3D G3DSA:3.30.1360.40 241 344 3.9E-192 T 13-10-2018 CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 5 349 6.8E-111 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 Gene3D G3DSA:2.30.30.280 212 271 1.3E-17 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 SUPERFAMILY SSF52402 2 241 5.95E-60 T 13-10-2018 CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 Gene3D G3DSA:3.40.50.620 1 207 4.7E-83 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 Gene3D G3DSA:2.40.30.10 272 352 2.5E-25 T 13-10-2018 CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 4 350 40.018 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CLM_3301 e63a4e096aa1645f31f4f133d455b209 353 Pfam PF03054 tRNA methyl transferase 5 349 1.4E-121 T 13-10-2018 CLM_2528 8bdb502a2b1b723638e0f9a55fec8f10 508 Pfam PF05133 Phage portal protein, SPP1 Gp6-like 14 475 3.9E-80 T 13-10-2018 IPR021145 Portal protein CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 SUPERFAMILY SSF55021 236 317 3.09E-15 T 13-10-2018 CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 Pfam PF09383 NIL domain 248 317 2.2E-13 T 13-10-2018 IPR018449 NIL domain CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 SUPERFAMILY SSF52540 1 233 5.45E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 SMART SM00930 245 318 1.6E-17 T 13-10-2018 IPR018449 NIL domain CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 Gene3D G3DSA:3.40.50.300 1 228 6.5E-73 T 13-10-2018 CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 SMART SM00382 26 214 1.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 Gene3D G3DSA:3.30.70.260 229 318 4.2E-9 T 13-10-2018 CLM_1243 a237bab4d0c131500a28c24ab00cfec1 318 Pfam PF00005 ABC transporter 17 165 1.8E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1273 b85b355609da77a148855b0083b42b74 198 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 36 192 5.0E-29 T 13-10-2018 IPR005642 Lysine exporter LysO CLM_1273 b85b355609da77a148855b0083b42b74 198 Pfam PF03956 Lysine exporter LysO 7 195 3.5E-63 T 13-10-2018 IPR005642 Lysine exporter LysO CLM_3020 6e3dcf5969eb58fbc2d14cc6f229705b 334 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 176 3.1E-37 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3020 6e3dcf5969eb58fbc2d14cc6f229705b 334 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 205 314 4.6E-26 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3020 6e3dcf5969eb58fbc2d14cc6f229705b 334 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 247 332 9.8E-23 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3020 6e3dcf5969eb58fbc2d14cc6f229705b 334 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CLM_3020 6e3dcf5969eb58fbc2d14cc6f229705b 334 SUPERFAMILY SSF117143 91 294 5.1E-33 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLM_3020 6e3dcf5969eb58fbc2d14cc6f229705b 334 Pfam PF00460 Flagella basal body rod protein 5 35 3.0E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CLM_0381 4cbcfa0613f7e69a0284e9995752aff7 274 Pfam PF00005 ABC transporter 20 167 2.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0381 4cbcfa0613f7e69a0284e9995752aff7 274 Gene3D G3DSA:3.40.50.300 1 257 6.5E-69 T 13-10-2018 CLM_0381 4cbcfa0613f7e69a0284e9995752aff7 274 SUPERFAMILY SSF52540 4 229 5.77E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0381 4cbcfa0613f7e69a0284e9995752aff7 274 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0381 4cbcfa0613f7e69a0284e9995752aff7 274 SMART SM00382 28 217 2.6E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 285 5.7E-106 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 Gene3D G3DSA:3.20.20.70 3 286 1.6E-112 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 PIRSF PIRSF001359 3 286 7.3E-117 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 133 144 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 SUPERFAMILY SSF51569 4 285 1.76E-104 T 13-10-2018 CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 6 285 4.1E-105 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_2210 9add919be0bf337c740bb62f8fb4b501 286 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 4 285 2.0E-149 T 13-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 496 4.2E-50 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Gene3D G3DSA:2.40.30.20 1 92 4.2E-35 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 501 52.036 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 PIRSF PIRSF039088 1 503 6.0E-257 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 SUPERFAMILY SSF47917 372 500 8.89E-47 T 13-10-2018 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Gene3D G3DSA:3.40.50.300 94 371 1.9E-127 T 13-10-2018 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 SUPERFAMILY SSF50615 10 94 1.14E-29 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 500 5.3E-255 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 5.4E-73 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Gene3D G3DSA:1.20.150.20 372 502 2.5E-51 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 SUPERFAMILY SSF52540 96 370 2.29E-101 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0198 9e34e40ec26ef8af75178f67d12ecccb 504 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 91 1.5E-17 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_3324 486113f79cbc8a7cca72e4ebeb988356 320 SUPERFAMILY SSF48452 39 176 5.57E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3324 486113f79cbc8a7cca72e4ebeb988356 320 Gene3D G3DSA:1.25.40.10 9 226 1.1E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_2815 2c06f8d2efcb3af01e56550d9ec2c52c 91 Pfam PF04025 Domain of unknown function (DUF370) 5 77 1.3E-37 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A CLM_2815 2c06f8d2efcb3af01e56550d9ec2c52c 91 Hamap MF_01503 UPF0296 protein . 3 91 29.98 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A CLM_2815 2c06f8d2efcb3af01e56550d9ec2c52c 91 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 5 78 9.0E-36 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A CLM_0661 e776ffbe2f1bd6fa95df9b585370349c 126 SMART SM00345 15 74 1.7E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0661 e776ffbe2f1bd6fa95df9b585370349c 126 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 3.7E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_0661 e776ffbe2f1bd6fa95df9b585370349c 126 Gene3D G3DSA:1.10.10.10 8 125 1.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0661 e776ffbe2f1bd6fa95df9b585370349c 126 SUPERFAMILY SSF46785 4 84 5.38E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0734 ee99ea85df0505669a8882b540db6126 252 Pfam PF04397 LytTr DNA-binding domain 153 250 1.3E-23 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0734 ee99ea85df0505669a8882b540db6126 252 Gene3D G3DSA:3.40.50.300 1 150 3.7E-13 T 13-10-2018 CLM_0734 ee99ea85df0505669a8882b540db6126 252 SMART SM00850 152 251 2.4E-29 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0734 ee99ea85df0505669a8882b540db6126 252 Gene3D G3DSA:2.40.50.1020 151 252 8.5E-13 T 13-10-2018 CLM_0734 ee99ea85df0505669a8882b540db6126 252 SUPERFAMILY SSF52540 18 127 1.43E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0836 a08d633237be2a088813685faf2f03ce 247 Pfam PF01061 ABC-2 type transporter 3 212 2.6E-27 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CLM_0836 a08d633237be2a088813685faf2f03ce 247 PIRSF PIRSF006648 4 247 9.2E-18 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_0836 a08d633237be2a088813685faf2f03ce 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 192 211 4.0E-10 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_0836 a08d633237be2a088813685faf2f03ce 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 22 43 4.0E-10 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_0836 a08d633237be2a088813685faf2f03ce 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 172 191 4.0E-10 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_0836 a08d633237be2a088813685faf2f03ce 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 135 159 4.0E-10 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_1953 6dcf004f6144b5b390579af12ce43096 427 Gene3D G3DSA:3.90.1150.60 28 421 1.0E-182 T 13-10-2018 CLM_1953 6dcf004f6144b5b390579af12ce43096 427 SUPERFAMILY SSF53383 48 379 2.55E-40 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1953 6dcf004f6144b5b390579af12ce43096 427 Gene3D G3DSA:3.40.640.10 66 282 1.0E-182 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1953 6dcf004f6144b5b390579af12ce43096 427 Pfam PF06838 Methionine gamma-lyase 21 425 9.5E-206 T 13-10-2018 IPR009651 Putative methionine gamma-lyase CLM_3757 d9375b8667f768dbd0624adf94c260bb 237 SUPERFAMILY SSF53067 1 102 1.73E-24 T 13-10-2018 CLM_3757 d9375b8667f768dbd0624adf94c260bb 237 Pfam PF00814 Glycoprotease family 32 224 2.6E-26 T 13-10-2018 IPR000905 Gcp-like domain CLM_3757 d9375b8667f768dbd0624adf94c260bb 237 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 219 2.1E-51 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 CLM_3757 d9375b8667f768dbd0624adf94c260bb 237 Gene3D G3DSA:3.30.420.40 95 188 2.1E-54 T 13-10-2018 CLM_3757 d9375b8667f768dbd0624adf94c260bb 237 SUPERFAMILY SSF53067 108 217 1.81E-13 T 13-10-2018 CLM_3757 d9375b8667f768dbd0624adf94c260bb 237 Gene3D G3DSA:3.30.420.40 3 221 2.1E-54 T 13-10-2018 CLM_1595 d852fcb39e5d31c2d0ec6a574d932280 283 SUPERFAMILY SSF53187 79 282 3.77E-37 T 13-10-2018 CLM_1595 d852fcb39e5d31c2d0ec6a574d932280 283 SMART SM00646 161 279 8.6E-22 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_1595 d852fcb39e5d31c2d0ec6a574d932280 283 Gene3D G3DSA:3.40.630.40 77 283 1.5E-47 T 13-10-2018 CLM_1595 d852fcb39e5d31c2d0ec6a574d932280 283 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 81 279 1.0E-41 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Pfam PF00271 Helicase conserved C-terminal domain 229 337 6.3E-33 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 480 68.86 T 13-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 CLM_1938 a4d32718819648f2ca563047aa329a5a 481 SMART SM00490 256 337 3.5E-35 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1938 a4d32718819648f2ca563047aa329a5a 481 SUPERFAMILY SSF52540 72 358 5.49E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1938 a4d32718819648f2ca563047aa329a5a 481 ProSitePatterns PS00563 Stathmin family signature 1. 366 375 - T 13-10-2018 IPR030514 Stathmin, conserved site CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Pfam PF00270 DEAD/DEAH box helicase 29 193 1.3E-49 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Gene3D G3DSA:3.40.50.300 210 380 1.0E-52 T 13-10-2018 CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Gene3D G3DSA:3.30.70.330 406 481 5.9E-26 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLM_1938 a4d32718819648f2ca563047aa329a5a 481 SMART SM00487 23 215 1.5E-61 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Gene3D G3DSA:3.40.50.300 5 209 2.7E-75 T 13-10-2018 CLM_1938 a4d32718819648f2ca563047aa329a5a 481 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLM_1938 a4d32718819648f2ca563047aa329a5a 481 Pfam PF03880 DbpA RNA binding domain 408 477 1.4E-22 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain CLM_1770 7bcfb06a1aa2af960e9901dcf0676e3b 370 Pfam PF01381 Helix-turn-helix 10 64 9.7E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1770 7bcfb06a1aa2af960e9901dcf0676e3b 370 Gene3D G3DSA:1.25.40.10 66 315 4.0E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1770 7bcfb06a1aa2af960e9901dcf0676e3b 370 SUPERFAMILY SSF47413 3 68 3.84E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1770 7bcfb06a1aa2af960e9901dcf0676e3b 370 SUPERFAMILY SSF48452 64 235 7.3E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1770 7bcfb06a1aa2af960e9901dcf0676e3b 370 SMART SM00530 9 64 4.2E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1770 7bcfb06a1aa2af960e9901dcf0676e3b 370 Gene3D G3DSA:1.10.260.40 2 65 1.7E-21 T 13-10-2018 CLM_2685 088abb33a28630d0534d6e967d017997 124 SUPERFAMILY SSF47413 3 71 1.52E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2685 088abb33a28630d0534d6e967d017997 124 Pfam PF01381 Helix-turn-helix 9 64 1.9E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2685 088abb33a28630d0534d6e967d017997 124 SMART SM00530 8 64 1.3E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2685 088abb33a28630d0534d6e967d017997 124 Gene3D G3DSA:1.10.260.40 4 122 1.2E-17 T 13-10-2018 CLM_2649 ba9e66910216cfaaea51b99ae3c1a2ee 137 Gene3D G3DSA:3.30.2220.30 10 125 7.9E-30 T 13-10-2018 IPR038559 Clostridium phage phiCD119, XkdN superfamily CLM_2649 ba9e66910216cfaaea51b99ae3c1a2ee 137 Pfam PF08890 Phage XkdN-like tail assembly chaperone protein, TAC 5 136 3.3E-37 T 13-10-2018 IPR014986 Clostridium phage phiCD119, XkdN CLM_3845 b0020679e7b9cfe248c4b1f8d0673f0e 476 Gene3D G3DSA:3.40.710.10 141 470 3.5E-127 T 13-10-2018 CLM_3845 b0020679e7b9cfe248c4b1f8d0673f0e 476 Pfam PF00905 Penicillin binding protein transpeptidase domain 159 470 3.6E-71 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CLM_3845 b0020679e7b9cfe248c4b1f8d0673f0e 476 ProSitePatterns PS00337 Beta-lactamase class-D active site. 211 221 - T 13-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 CLM_3845 b0020679e7b9cfe248c4b1f8d0673f0e 476 Gene3D G3DSA:3.90.1310.10 64 376 3.5E-127 T 13-10-2018 CLM_3845 b0020679e7b9cfe248c4b1f8d0673f0e 476 SUPERFAMILY SSF56601 142 474 2.66E-92 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_3845 b0020679e7b9cfe248c4b1f8d0673f0e 476 SUPERFAMILY SSF56519 44 115 5.98E-9 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CLM_1087 20b65e6a983ebcce0bc1adc5ce93c3e6 223 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 15 206 1.3E-60 T 13-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 CLM_1087 20b65e6a983ebcce0bc1adc5ce93c3e6 223 Gene3D G3DSA:3.40.1010.10 10 110 2.8E-21 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_1087 20b65e6a983ebcce0bc1adc5ce93c3e6 223 SUPERFAMILY SSF53790 12 209 8.14E-39 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_1087 20b65e6a983ebcce0bc1adc5ce93c3e6 223 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 12 195 1.6E-25 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_0479 f71698dfeb8cfddd358104a3567e21d1 201 SUPERFAMILY SSF158430 76 199 2.35E-39 T 13-10-2018 CLM_0479 f71698dfeb8cfddd358104a3567e21d1 201 Pfam PF11155 Domain of unknown function (DUF2935) 7 69 3.0E-20 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 CLM_0479 f71698dfeb8cfddd358104a3567e21d1 201 Pfam PF11155 Domain of unknown function (DUF2935) 83 195 3.2E-36 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 CLM_0479 f71698dfeb8cfddd358104a3567e21d1 201 Gene3D G3DSA:1.20.1260.120 3 201 4.1E-65 T 13-10-2018 CLM_0479 f71698dfeb8cfddd358104a3567e21d1 201 SUPERFAMILY SSF158430 8 81 2.75E-20 T 13-10-2018 CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 SUPERFAMILY SSF52540 3 271 3.64E-127 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 Gene3D G3DSA:3.40.50.300 1 286 1.0E-137 T 13-10-2018 CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 Hamap MF_01227 CTP synthase [pyrG]. 3 533 53.155 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 TIGRFAM TIGR00337 PyrG: CTP synthase 2 528 2.2E-263 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 Pfam PF00117 Glutamine amidotransferase class-I 303 528 4.4E-63 T 13-10-2018 IPR017926 Glutamine amidotransferase CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 Gene3D G3DSA:3.40.50.880 287 533 2.6E-108 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 Pfam PF06418 CTP synthase N-terminus 4 268 1.5E-132 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CLM_0175 37f7329a7b0437e7b80996eacfc00b4d 533 SUPERFAMILY SSF52317 291 531 2.57E-87 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_3694 5debfa8368c373019eb8c4fef73678cc 156 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 145 5.8E-29 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CLM_3694 5debfa8368c373019eb8c4fef73678cc 156 Gene3D G3DSA:3.60.21.10 1 156 1.2E-42 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_3694 5debfa8368c373019eb8c4fef73678cc 156 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 149 1.4E-33 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 CLM_3694 5debfa8368c373019eb8c4fef73678cc 156 SUPERFAMILY SSF56300 2 154 8.2E-41 T 13-10-2018 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 Pfam PF01297 Zinc-uptake complex component A periplasmic 41 298 8.6E-31 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 SUPERFAMILY SSF53807 39 301 2.16E-42 T 13-10-2018 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 PRINTS PR00691 Adhesin B signature 38 59 4.6E-7 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 PRINTS PR00691 Adhesin B signature 82 101 4.6E-7 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 PRINTS PR00691 Adhesin B signature 243 260 4.6E-7 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 PRINTS PR00691 Adhesin B signature 141 160 4.6E-7 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CLM_3754 dd7fdc31c0bb7bd9bd6fe67336b45df4 302 Gene3D G3DSA:3.40.50.1980 40 195 9.4E-32 T 13-10-2018 CLM_1048 13616164cab2b92955d6050c47a8d657 786 Pfam PF02687 FtsX-like permease family 686 779 3.9E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1048 13616164cab2b92955d6050c47a8d657 786 Pfam PF00005 ABC transporter 21 169 1.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1048 13616164cab2b92955d6050c47a8d657 786 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1048 13616164cab2b92955d6050c47a8d657 786 SMART SM00382 30 217 6.3E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1048 13616164cab2b92955d6050c47a8d657 786 SUPERFAMILY SSF52540 1 225 1.21E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1048 13616164cab2b92955d6050c47a8d657 786 Gene3D G3DSA:3.40.50.300 1 251 8.4E-72 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Pfam PF04122 Putative cell wall binding repeat 2 137 222 8.5E-20 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Pfam PF04122 Putative cell wall binding repeat 2 231 318 9.3E-19 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Pfam PF04122 Putative cell wall binding repeat 2 38 124 1.1E-20 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 SUPERFAMILY SSF89260 441 538 3.4E-11 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Gene3D G3DSA:3.40.50.12090 61 155 1.4E-10 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Gene3D G3DSA:3.40.50.12090 167 249 2.8E-7 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Gene3D G3DSA:2.60.120.380 439 556 4.5E-23 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Gene3D G3DSA:2.60.120.380 558 672 7.2E-20 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 Gene3D G3DSA:2.60.120.380 340 432 2.2E-6 T 13-10-2018 CLM_0447 2b0d8d83d9630b20ac83135639af56ac 689 SUPERFAMILY SSF89260 562 670 3.92E-12 T 13-10-2018 CLM_0115 298eae8cdc49ffdaaa2885c08b9db008 172 Pfam PF07670 Nucleoside recognition 43 143 7.7E-8 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_3861 0a40a764e86fd052fb9ba8c90523235c 204 SUPERFAMILY SSF89392 34 201 7.85E-5 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX CLM_3861 0a40a764e86fd052fb9ba8c90523235c 204 Gene3D G3DSA:2.50.20.10 31 203 3.5E-9 T 13-10-2018 CLM_3861 0a40a764e86fd052fb9ba8c90523235c 204 PIRSF PIRSF033729 1 204 2.8E-55 T 13-10-2018 IPR014584 Uncharacterised conserved protein UCP033729 CLM_2984 e9527e17f08760adff474a54dfbe3b5f 287 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 251 4.3E-31 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CLM_2984 e9527e17f08760adff474a54dfbe3b5f 287 SUPERFAMILY SSF53590 1 254 1.44E-40 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CLM_2984 e9527e17f08760adff474a54dfbe3b5f 287 Gene3D G3DSA:3.90.245.10 1 78 2.6E-11 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CLM_2984 e9527e17f08760adff474a54dfbe3b5f 287 Gene3D G3DSA:3.90.245.10 79 284 2.4E-30 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CLM_1885 3738def71f84473bb829d8c33d4c2165 295 SUPERFAMILY SSF52343 104 255 2.75E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_1885 3738def71f84473bb829d8c33d4c2165 295 PIRSF PIRSF006816 1 262 5.1E-63 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 CLM_1885 3738def71f84473bb829d8c33d4c2165 295 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 220 256 1.5E-12 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLM_1885 3738def71f84473bb829d8c33d4c2165 295 SUPERFAMILY SSF63380 2 91 4.92E-21 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CLM_1885 3738def71f84473bb829d8c33d4c2165 295 Gene3D G3DSA:3.40.50.80 107 210 4.0E-30 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLM_1885 3738def71f84473bb829d8c33d4c2165 295 Gene3D G3DSA:2.40.30.10 1 91 6.0E-24 T 13-10-2018 CLM_0271 63cc4ea9bbf0c924a4daa45992e5df5a 367 Pfam PF02653 Branched-chain amino acid transport system / permease component 74 346 2.7E-38 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 239 1.7E-11 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 424 8.1E-44 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 PIRSF PIRSF003095 1 430 3.1E-129 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Gene3D G3DSA:3.30.70.1050 1 112 6.6E-33 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 SUPERFAMILY SSF54534 89 243 6.09E-31 T 13-10-2018 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Gene3D G3DSA:1.10.3120.10 114 427 3.5E-85 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 TIGRFAM TIGR00115 tig: trigger factor 13 423 1.6E-136 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Pfam PF05697 Bacterial trigger factor protein (TF) 1 145 6.8E-43 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 SUPERFAMILY SSF109998 250 427 3.14E-41 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Hamap MF_00303 Trigger factor [tig]. 1 429 22.911 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 SUPERFAMILY SSF102735 1 132 1.7E-40 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 CLM_3644 e42fb18811259fe634bd18a840b343e5 430 Gene3D G3DSA:3.10.50.40 151 248 3.5E-85 T 13-10-2018 CLM_2274 839c58f257c45694f100fdd3cac8e3c2 97 Pfam PF14242 Domain of unknown function (DUF4342) 7 75 3.8E-18 T 13-10-2018 IPR025642 Domain of unknown function DUF4342 CLM_2873 333f92cc22cab88f35e7ea4df286e7fd 162 SUPERFAMILY SSF50346 75 135 8.32E-8 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CLM_2873 333f92cc22cab88f35e7ea4df286e7fd 162 Gene3D G3DSA:2.30.30.240 76 138 5.5E-5 T 13-10-2018 CLM_2873 333f92cc22cab88f35e7ea4df286e7fd 162 SUPERFAMILY SSF50346 1 67 2.75E-8 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CLM_2873 333f92cc22cab88f35e7ea4df286e7fd 162 Pfam PF05239 PRC-barrel domain 7 67 4.4E-6 T 13-10-2018 IPR027275 PRC-barrel domain CLM_2873 333f92cc22cab88f35e7ea4df286e7fd 162 Pfam PF05239 PRC-barrel domain 75 130 7.5E-8 T 13-10-2018 IPR027275 PRC-barrel domain CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 167 5.7E-31 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 SUPERFAMILY SSF53187 1 169 5.96E-43 T 13-10-2018 CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 Gene3D G3DSA:3.40.630.40 1 173 7.9E-57 T 13-10-2018 CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 Gene3D G3DSA:2.30.30.40 193 251 7.1E-16 T 13-10-2018 CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 SMART SM00287 192 252 0.0011 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 Pfam PF08239 Bacterial SH3 domain 201 251 1.1E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2631 bdbc8dc48d99d4109ff3f157d915ba47 253 SMART SM00646 65 168 4.4E-19 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_0154 61fbffb41da2b455d2a3971dc55fb3d4 255 Gene3D G3DSA:3.90.1200.10 28 251 1.8E-24 T 13-10-2018 CLM_3314 ad96d351df5b3af7a3badf7672bd1926 285 SMART SM00382 28 207 4.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3314 ad96d351df5b3af7a3badf7672bd1926 285 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3314 ad96d351df5b3af7a3badf7672bd1926 285 Gene3D G3DSA:3.40.50.300 4 225 1.9E-47 T 13-10-2018 CLM_3314 ad96d351df5b3af7a3badf7672bd1926 285 Pfam PF00005 ABC transporter 20 158 2.0E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3314 ad96d351df5b3af7a3badf7672bd1926 285 SUPERFAMILY SSF52540 2 223 6.41E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2305 3ac9a3cf03a7babb4077718066544b43 449 SUPERFAMILY SSF53448 11 231 1.13E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2305 3ac9a3cf03a7babb4077718066544b43 449 Pfam PF00535 Glycosyl transferase family 2 252 379 5.8E-13 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_2305 3ac9a3cf03a7babb4077718066544b43 449 Pfam PF00535 Glycosyl transferase family 2 13 181 8.0E-35 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_2305 3ac9a3cf03a7babb4077718066544b43 449 Gene3D G3DSA:3.90.550.10 4 241 1.6E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2305 3ac9a3cf03a7babb4077718066544b43 449 Gene3D G3DSA:3.90.550.10 250 449 1.1E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2305 3ac9a3cf03a7babb4077718066544b43 449 SUPERFAMILY SSF53448 252 448 4.22E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1370 9a4141e886b3e921ac0185fb4678e215 296 Pfam PF03313 Serine dehydratase alpha chain 15 276 1.1E-74 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CLM_1370 9a4141e886b3e921ac0185fb4678e215 296 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 3 292 5.4E-107 T 13-10-2018 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CLM_0511 0411c05376bf776994a101ec4396c231 223 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 6 217 1.1E-75 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 CLM_0511 0411c05376bf776994a101ec4396c231 223 SUPERFAMILY SSF52540 5 222 1.26E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0511 0411c05376bf776994a101ec4396c231 223 Gene3D G3DSA:3.40.50.300 15 222 6.8E-62 T 13-10-2018 CLM_0511 0411c05376bf776994a101ec4396c231 223 PIRSF PIRSF005624 2 223 3.2E-82 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 CLM_0511 0411c05376bf776994a101ec4396c231 223 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 36 196 5.8E-25 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CLM_2741 9ef805678191cf559298cb5503883105 82 SUPERFAMILY SSF54565 2 79 6.93E-35 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2741 9ef805678191cf559298cb5503883105 82 Pfam PF00886 Ribosomal protein S16 9 67 1.7E-27 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2741 9ef805678191cf559298cb5503883105 82 Gene3D G3DSA:3.30.1320.10 1 82 2.3E-37 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2741 9ef805678191cf559298cb5503883105 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 26.11 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2741 9ef805678191cf559298cb5503883105 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 13-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2741 9ef805678191cf559298cb5503883105 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 79 2.1E-37 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 Gene3D G3DSA:3.40.50.1970 4 172 6.2E-58 T 13-10-2018 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 SUPERFAMILY SSF56796 9 354 1.05E-95 T 13-10-2018 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 Pfam PF01761 3-dehydroquinate synthase 67 324 4.6E-93 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 PIRSF PIRSF001455 5 361 1.8E-109 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 Gene3D G3DSA:1.20.1090.10 173 358 3.3E-52 T 13-10-2018 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 15 352 2.6E-110 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CLM_1707 d1b200ad2863155ffac3be9311094b69 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 353 57.553 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 SUPERFAMILY SSF51261 495 647 4.53E-51 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 Pfam PF02378 Phosphotransferase system, EIIC 12 331 2.4E-63 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 428 445 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 395 474 2.3E-13 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 568 580 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 Gene3D G3DSA:3.30.1360.60 410 491 9.3E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 506 626 1.2E-45 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 SUPERFAMILY SSF55604 416 487 1.24E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 Pfam PF00367 phosphotransferase system, EIIB 419 450 6.0E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 Gene3D G3DSA:2.70.70.10 495 650 7.1E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_3120 df930f8fd4b6531195871daf9c42d3c1 651 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 505 628 4.9E-49 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 83 91 3.3E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 92 101 3.3E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 7 21 3.3E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 5 129 8.3E-44 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 4 130 23.567 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 Gene3D G3DSA:1.10.1200.120 4 132 4.6E-41 T 13-10-2018 IPR036019 Gated mechanosensitive channel CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 SUPERFAMILY SSF81330 14 125 1.57E-34 T 13-10-2018 IPR036019 Gated mechanosensitive channel CLM_0656 085307e6c538b5b1f6172ba5b773b5ca 133 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 4 130 2.2E-46 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CLM_2977 a4007071c87d00797cbb7d901bdbd2eb 224 Pfam PF00535 Glycosyl transferase family 2 3 120 2.8E-18 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_2977 a4007071c87d00797cbb7d901bdbd2eb 224 SUPERFAMILY SSF53448 1 206 8.84E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2977 a4007071c87d00797cbb7d901bdbd2eb 224 Gene3D G3DSA:3.90.550.10 1 187 9.7E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2977 a4007071c87d00797cbb7d901bdbd2eb 224 TIGRFAM TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated 2 220 4.8E-73 T 13-10-2018 IPR026461 Transferase 2, rSAM/selenodomain-associated CLM_3145 990217ed87f9c422086bb4c95f8c29db 326 Gene3D G3DSA:3.40.50.720 3 263 1.8E-129 T 13-10-2018 CLM_3145 990217ed87f9c422086bb4c95f8c29db 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 251 4.1E-61 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CLM_3145 990217ed87f9c422086bb4c95f8c29db 326 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 325 5.6E-137 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CLM_3145 990217ed87f9c422086bb4c95f8c29db 326 Gene3D G3DSA:3.90.25.10 184 319 1.8E-129 T 13-10-2018 CLM_3145 990217ed87f9c422086bb4c95f8c29db 326 SUPERFAMILY SSF51735 3 324 4.48E-97 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2133 7d3190d39e06e8959de195379d74616d 125 Gene3D G3DSA:3.30.428.10 1 118 7.9E-38 T 13-10-2018 IPR036265 HIT-like superfamily CLM_2133 7d3190d39e06e8959de195379d74616d 125 ProSitePatterns PS00892 HIT domain signature. 82 100 - T 13-10-2018 IPR019808 Histidine triad, conserved site CLM_2133 7d3190d39e06e8959de195379d74616d 125 SUPERFAMILY SSF54197 1 111 2.63E-36 T 13-10-2018 IPR036265 HIT-like superfamily CLM_2133 7d3190d39e06e8959de195379d74616d 125 Pfam PF01230 HIT domain 10 103 4.7E-21 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 123 1.5E-37 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 120 4.6E-21 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 123 1.2E-32 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 Gene3D G3DSA:3.90.470.20 1 123 7.2E-39 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 124 26.733 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 SUPERFAMILY SSF56214 2 123 2.22E-31 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_3863 a74feec4b0bb7f18bdd1ed1020db6541 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 87 2.0E-23 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CLM_3605 62b81a1be154e9a57976690f1e5878d6 297 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 2 199 1.3E-53 T 13-10-2018 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 CLM_3605 62b81a1be154e9a57976690f1e5878d6 297 Gene3D G3DSA:3.40.50.11900 206 296 9.8E-7 T 13-10-2018 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 Hamap MF_00367 GTPase Era [era]. 2 292 37.782 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 164 1.1E-33 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 SUPERFAMILY SSF54814 177 293 3.6E-41 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 TIGRFAM TIGR00436 era: GTP-binding protein Era 5 275 1.1E-100 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 Gene3D G3DSA:3.30.300.20 182 296 3.6E-42 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 Pfam PF07650 KH domain 204 281 2.7E-19 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 Pfam PF01926 50S ribosome-binding GTPase 7 121 2.6E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 Gene3D G3DSA:3.40.50.300 2 181 6.6E-51 T 13-10-2018 CLM_3340 54f304d1c4f16204af7587b0d4dac323 296 SUPERFAMILY SSF52540 7 197 3.34E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1667 6098f189b0ab6cc3fa6736ee5e5d157e 142 SUPERFAMILY SSF69279 7 142 1.02E-33 T 13-10-2018 CLM_1667 6098f189b0ab6cc3fa6736ee5e5d157e 142 Pfam PF09393 Phage tail tube protein 5 140 3.8E-33 T 13-10-2018 IPR018989 Phage tail tube protein CLM_1667 6098f189b0ab6cc3fa6736ee5e5d157e 142 Gene3D G3DSA:2.30.110.40 3 140 1.8E-36 T 13-10-2018 IPR038628 XkdM-like superfamily CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 Gene3D G3DSA:3.40.50.1100 7 304 4.5E-128 T 13-10-2018 CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 308 1.1E-136 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 SUPERFAMILY SSF53686 3 307 9.04E-104 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 Gene3D G3DSA:3.40.50.1100 48 147 4.5E-128 T 13-10-2018 CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 297 1.4E-68 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 36 54 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CLM_1330 ed8eb1e620970546aa12e2228d3da90f 309 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 308 8.2E-141 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CLM_3303 25e08de705361e9058c817f9aea4d1d0 543 PIRSF PIRSF010386 1 543 3.5E-177 T 13-10-2018 IPR012166 Uncharacterised protein family RocB CLM_3303 25e08de705361e9058c817f9aea4d1d0 543 Pfam PF01546 Peptidase family M20/M25/M40 124 417 4.1E-13 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_3303 25e08de705361e9058c817f9aea4d1d0 543 Gene3D G3DSA:3.40.630.10 1 226 3.3E-31 T 13-10-2018 CLM_3303 25e08de705361e9058c817f9aea4d1d0 543 SUPERFAMILY SSF53187 4 541 1.83E-29 T 13-10-2018 CLM_2094 4494b3d8a70030066222b201cac22691 567 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 509 1.3E-16 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CLM_2094 4494b3d8a70030066222b201cac22691 567 Gene3D G3DSA:3.40.50.300 253 555 7.3E-50 T 13-10-2018 CLM_2094 4494b3d8a70030066222b201cac22691 567 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 554 8.5E-156 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CLM_2094 4494b3d8a70030066222b201cac22691 567 PIRSF PIRSF003128 1 559 2.1E-162 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CLM_2094 4494b3d8a70030066222b201cac22691 567 Gene3D G3DSA:3.40.50.300 1 225 5.5E-40 T 13-10-2018 CLM_2094 4494b3d8a70030066222b201cac22691 567 SUPERFAMILY SSF52540 1 509 1.93E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3389 4ade4b70d792cc9542d8b4488be7fb13 283 SUPERFAMILY SSF54631 218 274 7.34E-5 T 13-10-2018 CLM_1981 cb0606596f01eb254638f4bae2273a20 114 SUPERFAMILY SSF69118 6 112 6.67E-30 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CLM_1981 cb0606596f01eb254638f4bae2273a20 114 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 104 2.5E-22 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CLM_1981 cb0606596f01eb254638f4bae2273a20 114 Gene3D G3DSA:1.20.1290.10 1 114 1.1E-34 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CLM_1981 cb0606596f01eb254638f4bae2273a20 114 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 88 9.1E-16 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CLM_0655 7dd6723de2b181a76a7297729afca79f 552 SMART SM00382 313 475 1.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0655 7dd6723de2b181a76a7297729afca79f 552 SMART SM00382 28 171 2.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0655 7dd6723de2b181a76a7297729afca79f 552 Gene3D G3DSA:3.40.50.300 251 511 5.8E-55 T 13-10-2018 CLM_0655 7dd6723de2b181a76a7297729afca79f 552 SUPERFAMILY SSF52540 4 176 1.83E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0655 7dd6723de2b181a76a7297729afca79f 552 Gene3D G3DSA:3.40.50.300 85 226 4.8E-28 T 13-10-2018 CLM_0655 7dd6723de2b181a76a7297729afca79f 552 Pfam PF00005 ABC transporter 23 126 5.4E-16 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0655 7dd6723de2b181a76a7297729afca79f 552 Pfam PF00005 ABC transporter 305 430 8.0E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0655 7dd6723de2b181a76a7297729afca79f 552 SUPERFAMILY SSF52540 278 488 1.78E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0655 7dd6723de2b181a76a7297729afca79f 552 Gene3D G3DSA:3.40.50.300 1 84 3.1E-17 T 13-10-2018 CLM_0655 7dd6723de2b181a76a7297729afca79f 552 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 SUPERFAMILY SSF52242 43 104 1.22E-5 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 Pfam PF04055 Radical SAM superfamily 178 338 1.9E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 SMART SM00729 173 386 5.4E-35 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 Pfam PF02310 B12 binding domain 6 122 3.5E-20 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 Pfam PF13311 Protein of unknown function (DUF4080) 366 541 6.3E-45 T 13-10-2018 IPR025288 Domain of unknown function DUF4080 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 Gene3D G3DSA:3.40.50.280 11 138 1.5E-10 T 13-10-2018 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 SUPERFAMILY SSF102114 163 374 1.44E-45 T 13-10-2018 CLM_2996 704c690472dbf895f6f7a9e46408396a 561 Gene3D G3DSA:3.80.30.20 171 357 2.7E-24 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_0697 95bbe9a7ddd9057c4fa88ff4fb4ac14c 822 Pfam PF02687 FtsX-like permease family 722 813 1.1E-6 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0697 95bbe9a7ddd9057c4fa88ff4fb4ac14c 822 Pfam PF02687 FtsX-like permease family 282 369 6.6E-11 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1760 3ce71b9c2c57d3396d6d4cf341acee45 115 Gene3D G3DSA:1.20.1270.360 3 115 7.5E-27 T 13-10-2018 CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 Pfam PF00571 CBS domain 289 345 6.7E-7 T 13-10-2018 IPR000644 CBS domain CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 Pfam PF00571 CBS domain 354 405 3.5E-8 T 13-10-2018 IPR000644 CBS domain CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 Gene3D G3DSA:1.25.60.10 164 284 1.3E-24 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 Pfam PF03448 MgtE intracellular N domain 186 287 1.2E-24 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 SMART SM00924 186 289 6.9E-33 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 SMART SM00116 360 409 1.2 T 13-10-2018 IPR000644 CBS domain CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 SMART SM00116 296 349 2.0 T 13-10-2018 IPR000644 CBS domain CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 SUPERFAMILY SSF54631 288 406 1.65E-25 T 13-10-2018 CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 Gene3D G3DSA:3.10.580.10 285 409 2.4E-36 T 13-10-2018 CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 SUPERFAMILY SSF158791 159 286 2.49E-29 T 13-10-2018 CLM_0253 dbaa2bc3f12fd54db5b3f45d831f87ac 421 Pfam PF05239 PRC-barrel domain 6 71 3.2E-7 T 13-10-2018 IPR027275 PRC-barrel domain CLM_4136 bf646720f6a0c7ebdd24942a19a9cde4 289 SUPERFAMILY SSF82689 191 286 4.05E-16 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CLM_4136 bf646720f6a0c7ebdd24942a19a9cde4 289 SUPERFAMILY SSF50182 124 186 5.89E-15 T 13-10-2018 IPR010920 LSM domain superfamily CLM_4136 bf646720f6a0c7ebdd24942a19a9cde4 289 Gene3D G3DSA:3.30.70.100 190 278 4.3E-19 T 13-10-2018 CLM_4136 bf646720f6a0c7ebdd24942a19a9cde4 289 Gene3D G3DSA:2.30.30.60 140 189 1.7E-20 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CLM_4136 bf646720f6a0c7ebdd24942a19a9cde4 289 SUPERFAMILY SSF82861 37 123 1.31E-5 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CLM_4136 bf646720f6a0c7ebdd24942a19a9cde4 289 Pfam PF00924 Mechanosensitive ion channel 84 280 1.0E-37 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 SUPERFAMILY SSF51905 1 324 2.76E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 Gene3D G3DSA:3.50.50.60 121 255 2.3E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 4.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 205 221 4.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 4.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 285 303 4.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 110 118 4.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 4.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.5E-18 T 13-10-2018 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 2.5E-18 T 13-10-2018 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 2.5E-18 T 13-10-2018 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 2.5E-18 T 13-10-2018 CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 Gene3D G3DSA:3.50.50.60 5 298 2.3E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3750 97c815072a0b0e931722ac35bc0f8447 418 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 310 4.8E-30 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_0044 5257ab67bb060fa415c55d2e559ed311 240 SUPERFAMILY SSF51412 82 206 7.96E-14 T 13-10-2018 CLM_0044 5257ab67bb060fa415c55d2e559ed311 240 Gene3D G3DSA:3.20.20.70 82 234 3.3E-13 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1496 33dc4c225178898ddcfd06b7fd648196 376 PIRSF PIRSF032908 1 373 5.0E-85 T 13-10-2018 IPR014574 Uncharacterised conserved protein UCP032908 CLM_1496 33dc4c225178898ddcfd06b7fd648196 376 Pfam PF07853 Protein of unknown function (DUF1648) 149 196 5.7E-15 T 13-10-2018 IPR012867 Domain of unknown function DUF1648 CLM_0266 9b4fd0fda7c37293e253d4cf3cd98e68 335 Gene3D G3DSA:3.80.30.30 112 335 2.3E-74 T 13-10-2018 CLM_0266 9b4fd0fda7c37293e253d4cf3cd98e68 335 TIGRFAM TIGR04070 photo_TT_lyase: spore photoproduct lyase 2 335 5.6E-164 T 13-10-2018 IPR023897 Spore photoproduct lyase GO:0003913 CLM_0266 9b4fd0fda7c37293e253d4cf3cd98e68 335 SUPERFAMILY SSF102114 81 248 3.4E-5 T 13-10-2018 CLM_0266 9b4fd0fda7c37293e253d4cf3cd98e68 335 Gene3D G3DSA:3.40.50.12110 1 111 8.1E-40 T 13-10-2018 CLM_3633 7cc6137e0952026400564b38e216a573 311 SUPERFAMILY SSF69318 50 168 9.42E-6 T 13-10-2018 CLM_1794 d156af79e1738c165f17517e2e98b608 253 SUPERFAMILY SSF53067 4 247 9.36E-29 T 13-10-2018 CLM_1794 d156af79e1738c165f17517e2e98b608 253 Gene3D G3DSA:3.30.420.40 96 231 1.7E-51 T 13-10-2018 CLM_1794 d156af79e1738c165f17517e2e98b608 253 Gene3D G3DSA:3.30.420.40 4 246 1.7E-51 T 13-10-2018 CLM_1794 d156af79e1738c165f17517e2e98b608 253 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 4 244 8.4E-30 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CLM_1794 d156af79e1738c165f17517e2e98b608 253 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 4 244 5.1E-47 T 13-10-2018 IPR008275 CoA enzyme activase CLM_0938 eea0c5355a2adbe54765b24e5747933f 213 SUPERFAMILY SSF100950 13 153 2.93E-5 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_0938 eea0c5355a2adbe54765b24e5747933f 213 PIRSF PIRSF020269 1 213 1.3E-88 T 13-10-2018 IPR009501 Uncharacterised conserved protein UCP020269 CLM_0938 eea0c5355a2adbe54765b24e5747933f 213 Pfam PF02589 LUD domain 14 207 1.0E-61 T 13-10-2018 IPR003741 LUD domain CLM_0498 aceabb413ddf91b636197018843e7a22 332 Gene3D G3DSA:3.40.718.10 1 332 6.7E-153 T 13-10-2018 CLM_0498 aceabb413ddf91b636197018843e7a22 332 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 224 243 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CLM_0498 aceabb413ddf91b636197018843e7a22 332 SMART SM01329 4 328 2.9E-195 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CLM_0498 aceabb413ddf91b636197018843e7a22 332 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 328 8.7E-116 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CLM_0498 aceabb413ddf91b636197018843e7a22 332 SUPERFAMILY SSF53659 1 332 4.42E-134 T 13-10-2018 CLM_3004 98b8b83587668c63a1d5490d605c6242 255 Pfam PF00460 Flagella basal body rod protein 5 35 1.7E-10 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CLM_3004 98b8b83587668c63a1d5490d605c6242 255 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 249 5.6E-18 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3004 98b8b83587668c63a1d5490d605c6242 255 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 140 2.2E-36 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3004 98b8b83587668c63a1d5490d605c6242 255 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CLM_3004 98b8b83587668c63a1d5490d605c6242 255 SUPERFAMILY SSF117143 92 212 1.29E-22 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLM_0139 a8dca87e490fa00cedbc9aa1e5dd35e8 224 SUPERFAMILY SSF158560 1 100 3.01E-24 T 13-10-2018 CLM_0139 a8dca87e490fa00cedbc9aa1e5dd35e8 224 Pfam PF06304 Protein of unknown function (DUF1048) 16 90 1.3E-7 T 13-10-2018 IPR008316 Uncharacterised conserved protein UCP029876 CLM_0139 a8dca87e490fa00cedbc9aa1e5dd35e8 224 Gene3D G3DSA:1.10.1900.10 5 88 7.8E-7 T 13-10-2018 CLM_1009 7327418896a4199f1d06bbe666a049c3 253 Pfam PF06738 Putative threonine/serine exporter 11 248 8.2E-61 T 13-10-2018 IPR010619 Putative threonine/serine exporter CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:1.20.1110.10 43 296 2.4E-55 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:3.40.1110.10 394 444 1.1E-51 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:3.40.50.1000 297 309 2.4E-55 T 13-10-2018 IPR023214 HAD superfamily CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:3.40.1110.10 310 324 2.4E-55 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 SUPERFAMILY SSF56784 294 595 2.0E-39 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Pfam PF00122 E1-E2 ATPase 99 278 5.0E-44 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 509 525 2.2E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 400 418 2.2E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 568 593 2.2E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 537 553 2.2E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 459 469 3.5E-20 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 149 163 3.5E-20 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 300 314 3.5E-20 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 556 3.5E-20 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 560 572 3.5E-20 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 SUPERFAMILY SSF81653 101 196 4.97E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 483 6.8E-45 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 503 624 1.4E-27 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:3.40.50.1000 445 574 1.1E-51 T 13-10-2018 IPR023214 HAD superfamily CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:2.70.150.10 6 202 2.4E-55 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Gene3D G3DSA:1.20.1110.10 575 783 1.1E-51 T 13-10-2018 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 SUPERFAMILY SSF81665 3 779 5.23E-64 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 302 308 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CLM_1465 62e5e00c2a3096503fea693d9fe3b95f 790 Pfam PF00702 haloacid dehalogenase-like hydrolase 296 551 4.2E-23 T 13-10-2018 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 SUPERFAMILY SSF52540 3 197 1.85E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 ProSitePatterns PS00211 ABC transporters family signature. 423 437 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 SUPERFAMILY SSF52540 297 490 1.18E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 Pfam PF00005 ABC transporter 326 451 1.9E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 Pfam PF00005 ABC transporter 22 146 3.1E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 Gene3D G3DSA:3.40.50.300 271 492 1.4E-41 T 13-10-2018 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 Gene3D G3DSA:3.40.50.300 2 244 4.3E-40 T 13-10-2018 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 ProSitePatterns PS00211 ABC transporters family signature. 118 132 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 SMART SM00382 334 491 0.041 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3237 22d236f0358c1deb70ae0d333f3a2c40 492 SMART SM00382 30 190 1.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2461 0fe7a2d71cff2f77ae23875596b5e9a1 189 Gene3D G3DSA:1.10.1760.20 1 169 1.2E-10 T 13-10-2018 CLM_2461 0fe7a2d71cff2f77ae23875596b5e9a1 189 TIGRFAM TIGR02359 thiW: energy coupling factor transporter S component ThiW 12 159 7.6E-40 T 13-10-2018 IPR012652 Energy coupling factor transporter S component ThiW CLM_2461 0fe7a2d71cff2f77ae23875596b5e9a1 189 Pfam PF09512 Thiamine-precursor transporter protein (ThiW) 12 156 2.6E-47 T 13-10-2018 IPR012652 Energy coupling factor transporter S component ThiW CLM_2461 0fe7a2d71cff2f77ae23875596b5e9a1 189 PIRSF PIRSF024534 1 166 2.3E-29 T 13-10-2018 IPR012652 Energy coupling factor transporter S component ThiW CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 Gene3D G3DSA:1.10.10.10 129 228 7.6E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 SMART SM00862 148 224 1.8E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 SMART SM00448 3 112 4.5E-45 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 Pfam PF00072 Response regulator receiver domain 5 112 1.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 Gene3D G3DSA:3.40.50.2300 3 128 3.4E-39 T 13-10-2018 CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 3.3E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2143 740ab57becb2fc03bc65cf89b20a87fe 228 SUPERFAMILY SSF52172 4 181 8.97E-41 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 PIRSF PIRSF002741 1 528 5.1E-113 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 SUPERFAMILY SSF53850 42 524 7.6E-121 T 13-10-2018 CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 448 8.1E-85 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 Gene3D G3DSA:3.10.105.10 287 496 8.3E-144 T 13-10-2018 CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 Gene3D G3DSA:3.40.190.10 52 503 8.3E-144 T 13-10-2018 CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 Gene3D G3DSA:3.90.76.10 77 195 8.3E-144 T 13-10-2018 CLM_1383 34a55207c2be4c3ca536a4abeca786e3 532 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 93 115 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CLM_3761 e59990f4af3572f0087a1eb7e43109e5 385 Pfam PF04326 Putative DNA-binding domain 14 134 8.1E-25 T 13-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 CLM_3761 e59990f4af3572f0087a1eb7e43109e5 385 Gene3D G3DSA:3.30.565.60 213 374 5.2E-10 T 13-10-2018 IPR038475 RecG, C-terminal domain superfamily CLM_3761 e59990f4af3572f0087a1eb7e43109e5 385 Gene3D G3DSA:3.30.950.30 2 142 1.2E-29 T 13-10-2018 IPR038461 Schlafen, AAA domain superfamily CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 PIRSF PIRSF006246 1 127 8.5E-55 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 93 6.0E-36 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 SUPERFAMILY SSF50692 1 122 1.07E-50 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 Pfam PF02261 Aspartate decarboxylase 1 114 9.4E-55 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 3.4E-50 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 Gene3D G3DSA:2.40.40.20 1 123 3.8E-55 T 13-10-2018 CLM_0503 53b945de780b7a1c6ede90dc9778a405 127 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 127 70.386 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CLM_3080 b3319173c237532c870f1c20e2db414a 491 Gene3D G3DSA:3.40.50.720 1 103 8.8E-6 T 13-10-2018 CLM_3080 b3319173c237532c870f1c20e2db414a 491 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 216 462 1.5E-13 T 13-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 CLM_3503 9df34c6116fcec51d11d514eee5247b1 375 Gene3D G3DSA:3.40.50.2000 17 188 2.1E-26 T 13-10-2018 CLM_3503 9df34c6116fcec51d11d514eee5247b1 375 SUPERFAMILY SSF53756 20 374 1.45E-68 T 13-10-2018 CLM_3503 9df34c6116fcec51d11d514eee5247b1 375 Pfam PF13477 Glycosyl transferase 4-like 20 157 8.2E-14 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_3503 9df34c6116fcec51d11d514eee5247b1 375 Gene3D G3DSA:3.40.50.2000 189 375 1.2E-35 T 13-10-2018 CLM_3503 9df34c6116fcec51d11d514eee5247b1 375 Pfam PF00534 Glycosyl transferases group 1 192 341 6.9E-35 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_3423 bf8e9456a59cecd91fd8e2e3e40a7619 260 SUPERFAMILY SSF49899 5 157 3.32E-12 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_3423 bf8e9456a59cecd91fd8e2e3e40a7619 260 Gene3D G3DSA:2.60.120.920 2 191 5.9E-18 T 13-10-2018 CLM_3423 bf8e9456a59cecd91fd8e2e3e40a7619 260 Pfam PF00622 SPRY domain 85 145 4.4E-6 T 13-10-2018 IPR003877 SPRY domain GO:0005515 CLM_1349 386a50c34fa302aecf7562a58439aff5 575 SUPERFAMILY SSF51905 56 571 1.39E-47 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1349 386a50c34fa302aecf7562a58439aff5 575 Gene3D G3DSA:1.20.1440.240 165 269 1.3E-76 T 13-10-2018 CLM_1349 386a50c34fa302aecf7562a58439aff5 575 SUPERFAMILY SSF54373 380 516 7.2E-17 T 13-10-2018 CLM_1349 386a50c34fa302aecf7562a58439aff5 575 Gene3D G3DSA:3.50.50.60 60 565 1.3E-76 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1349 386a50c34fa302aecf7562a58439aff5 575 Gene3D G3DSA:3.90.660.10 99 511 1.3E-76 T 13-10-2018 CLM_1349 386a50c34fa302aecf7562a58439aff5 575 Pfam PF01593 Flavin containing amine oxidoreductase 68 567 2.8E-42 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 CLM_1656 1800c71c3667b939c7e572ad88545304 580 Pfam PF03354 Phage Terminase 84 564 1.3E-69 T 13-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type CLM_1656 1800c71c3667b939c7e572ad88545304 580 Gene3D G3DSA:3.40.50.300 17 255 4.2E-15 T 13-10-2018 CLM_1248 6807250b02c1eccc089ffd42d4d4b202 209 Pfam PF13482 RNase_H superfamily 25 205 3.5E-43 T 13-10-2018 IPR038720 YprB, ribonuclease H-like domain CLM_1248 6807250b02c1eccc089ffd42d4d4b202 209 SUPERFAMILY SSF53098 23 205 3.64E-7 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_0761 b4274e78123a5ed8c82f4fb8b8c52da3 132 SUPERFAMILY SSF55811 2 128 2.57E-31 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_0761 b4274e78123a5ed8c82f4fb8b8c52da3 132 Pfam PF00293 NUDIX domain 6 122 1.8E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_0761 b4274e78123a5ed8c82f4fb8b8c52da3 132 Gene3D G3DSA:3.90.79.10 1 131 5.2E-33 T 13-10-2018 CLM_0761 b4274e78123a5ed8c82f4fb8b8c52da3 132 PRINTS PR00502 NUDIX hydrolase family signature 34 48 6.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_0761 b4274e78123a5ed8c82f4fb8b8c52da3 132 PRINTS PR00502 NUDIX hydrolase family signature 48 63 6.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_3870 ed16b3dd247396231ecc646aa1cd4e6c 390 Pfam PF00375 Sodium:dicarboxylate symporter family 6 377 4.2E-79 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CLM_3870 ed16b3dd247396231ecc646aa1cd4e6c 390 SUPERFAMILY SSF118215 6 377 3.01E-85 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_3870 ed16b3dd247396231ecc646aa1cd4e6c 390 PRINTS PR00173 Glutamate-aspartate symporter signature 1 18 7.7E-9 T 13-10-2018 CLM_3870 ed16b3dd247396231ecc646aa1cd4e6c 390 PRINTS PR00173 Glutamate-aspartate symporter signature 269 295 7.7E-9 T 13-10-2018 CLM_3870 ed16b3dd247396231ecc646aa1cd4e6c 390 PRINTS PR00173 Glutamate-aspartate symporter signature 122 144 7.7E-9 T 13-10-2018 CLM_3870 ed16b3dd247396231ecc646aa1cd4e6c 390 Gene3D G3DSA:1.10.3860.10 1 389 3.8E-57 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_0809 6cd089ea81564138adbb2df70cef6cec 412 Gene3D G3DSA:3.40.50.1980 148 259 2.7E-27 T 13-10-2018 CLM_0809 6cd089ea81564138adbb2df70cef6cec 412 Gene3D G3DSA:3.40.50.1980 11 147 4.5E-25 T 13-10-2018 CLM_0809 6cd089ea81564138adbb2df70cef6cec 412 SUPERFAMILY SSF53807 10 410 1.54E-61 T 13-10-2018 CLM_0809 6cd089ea81564138adbb2df70cef6cec 412 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 14 406 8.1E-50 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 CLM_3404 0d248239f19967933f1e05320d8b0174 184 SUPERFAMILY SSF54506 2 134 6.54E-24 T 13-10-2018 CLM_3404 0d248239f19967933f1e05320d8b0174 184 Pfam PF02567 Phenazine biosynthesis-like protein 6 103 3.5E-17 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_3404 0d248239f19967933f1e05320d8b0174 184 Gene3D G3DSA:3.10.310.10 1 122 4.6E-28 T 13-10-2018 CLM_1745 9aa503e4a9469c3c9de095fe8669f635 163 Gene3D G3DSA:3.90.960.10 1 163 1.0E-51 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CLM_1745 9aa503e4a9469c3c9de095fe8669f635 163 Pfam PF04073 Aminoacyl-tRNA editing domain 24 150 4.2E-29 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CLM_1745 9aa503e4a9469c3c9de095fe8669f635 163 SUPERFAMILY SSF55826 4 162 1.57E-43 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 250 1.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 266 1.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 SMART SM00342 183 266 9.6E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 SUPERFAMILY SSF51215 27 151 7.72E-5 T 13-10-2018 IPR037923 Transcription regulator HTH-like CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 Gene3D G3DSA:1.10.10.60 164 271 1.9E-27 T 13-10-2018 CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 Pfam PF12833 Helix-turn-helix domain 189 267 1.5E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0802 c773c5fdc1b52e15415664e125ea0dd7 273 SUPERFAMILY SSF46689 220 270 6.72E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1576 88a9e61d12615d5c386d9a14b8068c03 392 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 388 6.8E-148 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 CLM_1576 88a9e61d12615d5c386d9a14b8068c03 392 Gene3D G3DSA:3.40.640.10 68 292 9.1E-156 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1576 88a9e61d12615d5c386d9a14b8068c03 392 Gene3D G3DSA:3.90.1150.10 13 384 9.1E-156 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1576 88a9e61d12615d5c386d9a14b8068c03 392 Pfam PF00155 Aminotransferase class I and II 36 384 9.9E-43 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1576 88a9e61d12615d5c386d9a14b8068c03 392 SUPERFAMILY SSF53383 1 389 8.47E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2574 a76fea66685eb26703ee10fa919587b2 73 Pfam PF01381 Helix-turn-helix 5 57 3.0E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2574 a76fea66685eb26703ee10fa919587b2 73 SUPERFAMILY SSF47413 3 63 1.63E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2574 a76fea66685eb26703ee10fa919587b2 73 SMART SM00530 4 59 8.2E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2574 a76fea66685eb26703ee10fa919587b2 73 Gene3D G3DSA:1.10.260.40 1 63 2.9E-20 T 13-10-2018 CLM_3307 49b2367eb1b71dd2e47f179a8770e479 437 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 4 427 88.746 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CLM_3307 49b2367eb1b71dd2e47f179a8770e479 437 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 5 423 1.3E-179 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CLM_3307 49b2367eb1b71dd2e47f179a8770e479 437 Pfam PF01964 Radical SAM ThiC family 5 422 3.0E-194 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CLM_3307 49b2367eb1b71dd2e47f179a8770e479 437 Gene3D G3DSA:3.20.20.540 46 363 2.1E-137 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CLM_4140 8101101fb1fe5340491f63403007432a 193 SUPERFAMILY SSF53163 15 181 7.59E-52 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CLM_4140 8101101fb1fe5340491f63403007432a 193 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 34 173 8.3E-68 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 CLM_4140 8101101fb1fe5340491f63403007432a 193 Pfam PF06866 Protein of unknown function (DUF1256) 14 171 5.7E-65 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 CLM_3582 542e13157a305bd956bd936a391dcd66 253 SMART SM00382 32 213 6.0E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3582 542e13157a305bd956bd936a391dcd66 253 SUPERFAMILY SSF52540 5 218 8.83E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3582 542e13157a305bd956bd936a391dcd66 253 Pfam PF00005 ABC transporter 23 162 5.6E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3582 542e13157a305bd956bd936a391dcd66 253 Gene3D G3DSA:3.40.50.300 4 245 9.0E-66 T 13-10-2018 CLM_3582 542e13157a305bd956bd936a391dcd66 253 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3887 10224945b8357ecc244713f1badfdacd 176 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 12 171 2.8E-35 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 CLM_3887 10224945b8357ecc244713f1badfdacd 176 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 6 175 7.7E-26 T 13-10-2018 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 CLM_3887 10224945b8357ecc244713f1badfdacd 176 Gene3D G3DSA:3.40.920.10 1 176 2.4E-56 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CLM_3887 10224945b8357ecc244713f1badfdacd 176 SUPERFAMILY SSF53323 4 176 3.53E-42 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CLM_1976 b09ec9d9a14984f90c3f91bc4f6ee573 228 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 23 224 1.5E-33 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CLM_1839 3f7c2043c186f1b5f3ddebccd84b9f47 273 SMART SM00954 67 209 5.8E-29 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CLM_1839 3f7c2043c186f1b5f3ddebccd84b9f47 273 Pfam PF04607 Region found in RelA / SpoT proteins 67 206 8.6E-30 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CLM_1839 3f7c2043c186f1b5f3ddebccd84b9f47 273 Gene3D G3DSA:3.30.460.10 18 190 9.5E-17 T 13-10-2018 CLM_1839 3f7c2043c186f1b5f3ddebccd84b9f47 273 SUPERFAMILY SSF81301 25 234 3.92E-33 T 13-10-2018 CLM_2852 8fe89a6903822a33849aecfa7e492181 66 Gene3D G3DSA:3.40.630.30 3 66 2.1E-9 T 13-10-2018 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 77 93 9.2E-44 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 308 324 9.2E-44 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 111 131 9.2E-44 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 397 412 9.2E-44 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 148 165 9.2E-44 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 265 283 9.2E-44 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 SUPERFAMILY SSF101821 89 216 3.2E-36 T 13-10-2018 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 13 430 4.7E-135 T 13-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 Gene3D G3DSA:3.40.630.10 9 429 3.6E-163 T 13-10-2018 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 Gene3D G3DSA:2.30.250.10 87 220 3.6E-163 T 13-10-2018 IPR023358 Peptidase M18, domain 2 GO:0004177 CLM_3783 a01d278f38e216aa82d42fd7b403346a 432 SUPERFAMILY SSF53187 5 430 3.96E-99 T 13-10-2018 CLM_1095 8106f185a5ed5475cdfe6c9e0743cb1d 182 Gene3D G3DSA:3.40.630.30 14 181 7.5E-37 T 13-10-2018 CLM_1095 8106f185a5ed5475cdfe6c9e0743cb1d 182 SUPERFAMILY SSF55729 15 181 3.09E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1095 8106f185a5ed5475cdfe6c9e0743cb1d 182 Pfam PF00583 Acetyltransferase (GNAT) family 61 153 6.4E-15 T 13-10-2018 IPR000182 GNAT domain CLM_3547 f0de3d1797ac438e67374803c172153c 299 TIGRFAM TIGR02834 spo_ytxC: putative sporulation protein YtxC 6 283 4.2E-75 T 13-10-2018 IPR014199 Sporulation protein YtxC CLM_3547 f0de3d1797ac438e67374803c172153c 299 Pfam PF08812 YtxC-like family 67 282 1.6E-65 T 13-10-2018 IPR014199 Sporulation protein YtxC CLM_3316 a77c3e671ae5afdeac95fa397a1b6dce 170 Gene3D G3DSA:1.10.1760.20 1 166 3.4E-7 T 13-10-2018 CLM_3316 a77c3e671ae5afdeac95fa397a1b6dce 170 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 159 3.0E-42 T 13-10-2018 CLM_3316 a77c3e671ae5afdeac95fa397a1b6dce 170 Pfam PF17099 Tryptophan transporter TrpP 2 163 1.3E-57 T 13-10-2018 IPR031360 Tryptophan transporter TrpP CLM_3923 608809e732b4bd5a9ebf3fc55cc4543b 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.611 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3923 608809e732b4bd5a9ebf3fc55cc4543b 37 Pfam PF00444 Ribosomal protein L36 1 37 3.2E-19 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3923 608809e732b4bd5a9ebf3fc55cc4543b 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.8E-24 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3923 608809e732b4bd5a9ebf3fc55cc4543b 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 2.0E-8 T 13-10-2018 CLM_3923 608809e732b4bd5a9ebf3fc55cc4543b 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3923 608809e732b4bd5a9ebf3fc55cc4543b 37 SUPERFAMILY SSF57840 1 37 6.28E-17 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.8E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 Pfam PF03466 LysR substrate binding domain 89 293 5.9E-30 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 Gene3D G3DSA:3.40.190.290 91 300 3.0E-32 T 13-10-2018 CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 Gene3D G3DSA:1.10.10.10 1 89 2.6E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 SUPERFAMILY SSF46785 1 87 5.45E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_4082 36a2a85c0e07c258f97b8833c5f3012e 301 SUPERFAMILY SSF53850 91 295 5.83E-29 T 13-10-2018 CLM_0495 8eacf37cf984e6bd34fa83214e537e59 240 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 56 183 1.3E-33 T 13-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 CLM_0495 8eacf37cf984e6bd34fa83214e537e59 240 SMART SM00563 72 186 6.0E-35 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CLM_0495 8eacf37cf984e6bd34fa83214e537e59 240 Pfam PF01553 Acyltransferase 59 183 2.1E-29 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CLM_0495 8eacf37cf984e6bd34fa83214e537e59 240 SUPERFAMILY SSF69593 52 236 1.44E-43 T 13-10-2018 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 4 438 1.4E-74 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 SUPERFAMILY SSF53633 3 279 8.64E-58 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 PIRSF PIRSF000726 2 439 3.5E-73 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 Gene3D G3DSA:3.40.1160.10 2 279 7.5E-83 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 SUPERFAMILY SSF55021 288 381 3.27E-14 T 13-10-2018 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 Gene3D G3DSA:3.30.2130.10 280 439 2.6E-58 T 13-10-2018 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 SUPERFAMILY SSF55021 365 438 9.16E-18 T 13-10-2018 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_1881 f38c62e9ef0b4e3f701fd4db41e5a210 439 Pfam PF00696 Amino acid kinase family 3 265 1.8E-32 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 SUPERFAMILY SSF90123 15 328 1.7E-45 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 Pfam PF00005 ABC transporter 349 498 4.1E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 Gene3D G3DSA:3.40.50.300 328 571 4.4E-91 T 13-10-2018 CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 SUPERFAMILY SSF52540 328 569 2.77E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 SMART SM00382 358 550 2.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 Gene3D G3DSA:1.20.1560.10 13 320 3.7E-37 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1207 da4dcbf1d1677331cbee4220b3b1700e 571 Pfam PF00664 ABC transporter transmembrane region 56 287 4.4E-15 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 319 378 6.0E-16 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Gene3D G3DSA:2.30.30.40 562 687 8.3E-36 T 13-10-2018 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SUPERFAMILY SSF55052 169 252 6.8E-25 T 13-10-2018 IPR035891 CheY-binding domain of CheA CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SMART SM00073 3 100 9.5E-32 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 482 1.4E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 546 559 1.4E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 540 1.4E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Gene3D G3DSA:3.30.70.1110 169 253 3.4E-29 T 13-10-2018 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SUPERFAMILY SSF55874 381 560 3.8E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Pfam PF01627 Hpt domain 6 100 3.4E-20 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Gene3D G3DSA:3.30.565.10 379 561 4.0E-53 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Gene3D G3DSA:1.20.120.160 1 142 2.3E-40 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SUPERFAMILY SSF47384 319 379 9.42E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SMART SM00387 423 562 2.8E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Gene3D G3DSA:1.10.287.560 318 378 1.3E-21 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SUPERFAMILY SSF47226 3 125 9.42E-33 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 561 6.4E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Pfam PF01584 CheW-like domain 566 690 1.1E-25 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SUPERFAMILY SSF50341 561 691 8.11E-31 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Pfam PF07194 P2 response regulator binding domain 172 250 2.6E-26 T 13-10-2018 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SMART SM00260 554 691 8.4E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 SMART SM01231 318 378 1.3E-19 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CLM_3114 f98e15e64d52d6999e59a5e574e65ca0 691 Gene3D G3DSA:2.40.50.180 585 646 8.3E-36 T 13-10-2018 CLM_2195 1414cac34e05c92715010739bb20c0dd 370 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 10 367 4.8E-53 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 CLM_2195 1414cac34e05c92715010739bb20c0dd 370 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 205 366 1.8E-27 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 CLM_2195 1414cac34e05c92715010739bb20c0dd 370 Gene3D G3DSA:3.30.300.210 221 368 6.4E-18 T 13-10-2018 IPR038501 Spore germination GerAC superfamily CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 Gene3D G3DSA:3.90.110.10 170 444 2.5E-98 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 Gene3D G3DSA:3.40.50.720 4 169 6.2E-57 T 13-10-2018 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 SUPERFAMILY SSF51735 6 166 3.53E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 Pfam PF02056 Family 4 glycosyl hydrolase 8 187 1.9E-62 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 419 2.3E-50 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 8 23 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 8.3E-56 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CLM_0347 4f3ea3a0a13fb6d88369e7a3715f03e0 444 SUPERFAMILY SSF56327 171 444 5.11E-90 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 Pfam PF02743 Cache domain 37 268 7.4E-30 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 SUPERFAMILY SSF103190 110 163 1.62E-7 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_1932 3f060dc9027e2145cb585e581203fa12 667 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 436 618 9.6E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 Gene3D G3DSA:1.10.287.950 363 665 1.2E-65 T 13-10-2018 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 SUPERFAMILY SSF58104 329 665 8.72E-65 T 13-10-2018 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 Gene3D G3DSA:3.30.450.20 141 272 4.7E-29 T 13-10-2018 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 SMART SM00283 390 665 5.7E-60 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1932 3f060dc9027e2145cb585e581203fa12 667 Gene3D G3DSA:1.20.1480.50 273 362 6.9E-11 T 13-10-2018 CLM_1632 b32ca1defe17134f84981637fbd99ccb 209 Pfam PF04404 ERF superfamily 3 148 1.7E-16 T 13-10-2018 IPR007499 Essential recombination function protein CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 Gene3D G3DSA:3.40.640.10 69 300 3.6E-136 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 Gene3D G3DSA:3.90.1150.10 16 377 3.6E-136 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 SUPERFAMILY SSF53383 25 392 1.6E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 242 255 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 Pfam PF00155 Aminotransferase class I and II 35 381 4.2E-53 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 99 119 2.3E-11 T 13-10-2018 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 236 260 2.3E-11 T 13-10-2018 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 167 191 2.3E-11 T 13-10-2018 CLM_1169 b5185e75d3bbc5953c8fafa0874d156a 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 121 142 2.3E-11 T 13-10-2018 CLM_0064 96cf1c409fbbf4f0ae27b851483996a2 480 Pfam PF13786 Domain of unknown function (DUF4179) 56 145 1.9E-23 T 13-10-2018 IPR025436 Domain of unknown function DUF4179 CLM_0064 96cf1c409fbbf4f0ae27b851483996a2 480 Gene3D G3DSA:2.60.40.1630 86 226 2.2E-25 T 13-10-2018 CLM_2932 f8cb888edafee12c69412005d760c0ed 241 Pfam PF00574 Clp protease 44 177 4.3E-18 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_2932 f8cb888edafee12c69412005d760c0ed 241 Gene3D G3DSA:3.90.226.10 2 198 2.8E-28 T 13-10-2018 CLM_2932 f8cb888edafee12c69412005d760c0ed 241 SUPERFAMILY SSF52096 4 176 3.78E-27 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_2480 732909dce68bbddf35673dcfe348cfbf 193 Pfam PF03358 NADPH-dependent FMN reductase 1 132 2.1E-24 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_2480 732909dce68bbddf35673dcfe348cfbf 193 SUPERFAMILY SSF52218 1 188 2.33E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2480 732909dce68bbddf35673dcfe348cfbf 193 Gene3D G3DSA:3.40.50.360 2 193 1.6E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0883 88c4f7e2a71feb4d8fa7f7b8043b0c5d 118 Pfam PF05635 23S rRNA-intervening sequence protein 4 106 1.5E-31 T 13-10-2018 IPR012657 23S rRNA-intervening sequence protein CLM_0883 88c4f7e2a71feb4d8fa7f7b8043b0c5d 118 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 6 112 2.8E-35 T 13-10-2018 IPR012657 23S rRNA-intervening sequence protein CLM_0883 88c4f7e2a71feb4d8fa7f7b8043b0c5d 118 Gene3D G3DSA:1.20.1440.60 1 115 3.8E-42 T 13-10-2018 IPR036583 23S rRNA-intervening sequence superfamily CLM_0883 88c4f7e2a71feb4d8fa7f7b8043b0c5d 118 SUPERFAMILY SSF158446 4 110 7.98E-36 T 13-10-2018 IPR036583 23S rRNA-intervening sequence superfamily CLM_0883 88c4f7e2a71feb4d8fa7f7b8043b0c5d 118 PIRSF PIRSF035652 1 117 4.6E-40 T 13-10-2018 IPR012657 23S rRNA-intervening sequence protein CLM_0721 13fef4fb674601fbb8ccb5b60e8b0d70 270 Gene3D G3DSA:3.40.50.2300 1 130 2.6E-26 T 13-10-2018 CLM_0721 13fef4fb674601fbb8ccb5b60e8b0d70 270 SMART SM00448 1 115 2.6E-10 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0721 13fef4fb674601fbb8ccb5b60e8b0d70 270 Pfam PF00072 Response regulator receiver domain 3 114 3.6E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0721 13fef4fb674601fbb8ccb5b60e8b0d70 270 Pfam PF08664 YcbB domain 146 264 4.4E-36 T 13-10-2018 IPR013972 YcbB domain CLM_0721 13fef4fb674601fbb8ccb5b60e8b0d70 270 SUPERFAMILY SSF52172 1 126 3.98E-25 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0419 e1edd30ed1cf7bcef5545d68819f1ace 270 Gene3D G3DSA:3.20.20.370 38 270 3.2E-63 T 13-10-2018 CLM_0419 e1edd30ed1cf7bcef5545d68819f1ace 270 Pfam PF01522 Polysaccharide deacetylase 75 187 1.1E-28 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_0419 e1edd30ed1cf7bcef5545d68819f1ace 270 SUPERFAMILY SSF88713 55 267 4.2E-51 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 SMART SM00304 327 379 8.7E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 Gene3D G3DSA:3.30.450.20 56 297 4.2E-56 T 13-10-2018 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 SUPERFAMILY SSF103190 57 208 2.9E-8 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 Gene3D G3DSA:1.10.287.950 375 683 2.8E-69 T 13-10-2018 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 SMART SM00283 394 683 3.0E-78 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 Gene3D G3DSA:3.30.450.20 64 199 4.2E-56 T 13-10-2018 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 Pfam PF02743 Cache domain 38 289 4.7E-32 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 SUPERFAMILY SSF58104 347 683 6.28E-72 T 13-10-2018 CLM_0469 edadba61779d3677a547fbd11c5ed3b9 684 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 457 636 1.1E-44 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0359 c32eef77f6c7c128baff21e2098cdade 343 SUPERFAMILY SSF53807 65 340 5.89E-40 T 13-10-2018 CLM_0359 c32eef77f6c7c128baff21e2098cdade 343 Pfam PF01497 Periplasmic binding protein 74 312 1.4E-21 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_0359 c32eef77f6c7c128baff21e2098cdade 343 Gene3D G3DSA:3.40.50.1980 29 198 3.4E-38 T 13-10-2018 CLM_0359 c32eef77f6c7c128baff21e2098cdade 343 Gene3D G3DSA:3.40.50.1980 201 342 5.6E-18 T 13-10-2018 CLM_0388 c7d05392fd4465a216d40752d1ff2a62 285 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 11 268 1.5E-72 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CLM_0388 c7d05392fd4465a216d40752d1ff2a62 285 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 6 276 16.95 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CLM_0388 c7d05392fd4465a216d40752d1ff2a62 285 Pfam PF02673 Bacitracin resistance protein BacA 11 271 1.3E-77 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 Pfam PF00512 His Kinase A (phospho-acceptor) domain 278 340 2.6E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 SUPERFAMILY SSF158472 224 268 4.18E-6 T 13-10-2018 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 SMART SM00304 218 270 9.8E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 Gene3D G3DSA:3.30.565.10 349 503 1.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 SMART SM00387 391 502 6.6E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 Gene3D G3DSA:1.20.1480.50 188 272 5.9E-7 T 13-10-2018 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 392 496 3.7E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 Gene3D G3DSA:1.10.287.130 273 348 4.8E-19 T 13-10-2018 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 4.4E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 4.4E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 SMART SM00388 278 345 1.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 SUPERFAMILY SSF47384 261 345 2.94E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0434 3672a3bcf508b2d758aae6cbf76efc57 504 SUPERFAMILY SSF55874 335 498 2.36E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0698 0b55afba126c705f0c7e5e8929b550d6 226 SMART SM00382 32 220 1.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0698 0b55afba126c705f0c7e5e8929b550d6 226 Gene3D G3DSA:3.40.50.300 2 223 5.2E-60 T 13-10-2018 CLM_0698 0b55afba126c705f0c7e5e8929b550d6 226 SUPERFAMILY SSF52540 4 221 6.65E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0698 0b55afba126c705f0c7e5e8929b550d6 226 Pfam PF00005 ABC transporter 23 171 8.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0698 0b55afba126c705f0c7e5e8929b550d6 226 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1571 6fed0701d9ae0775f36dd5d487ef0cde 251 SMART SM00382 31 219 2.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1571 6fed0701d9ae0775f36dd5d487ef0cde 251 Gene3D G3DSA:3.40.50.300 2 239 2.9E-62 T 13-10-2018 CLM_1571 6fed0701d9ae0775f36dd5d487ef0cde 251 Pfam PF00005 ABC transporter 22 170 5.9E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1571 6fed0701d9ae0775f36dd5d487ef0cde 251 SUPERFAMILY SSF52540 3 227 5.19E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 33 51 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 SUPERFAMILY SSF46785 4 87 3.98E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 SMART SM00418 10 88 5.8E-27 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 Gene3D G3DSA:1.10.10.10 2 94 3.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 Pfam PF01022 Bacterial regulatory protein, arsR family 18 63 6.5E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 31 42 6.3E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 6.3E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 6.3E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0905 238fe64504337b9c0eaaa88cdd761b1c 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 6.3E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0894 e14a64ab4cf2e5fe15b7fbca4d98fe4e 178 TIGRFAM TIGR03209 P21_Cbot: transcriptional regulator BotR, P-21 18 159 4.5E-73 T 13-10-2018 IPR017622 Transcription regulator, P21/BotR , Clostridium toxin-associated CLM_0894 e14a64ab4cf2e5fe15b7fbca4d98fe4e 178 Gene3D G3DSA:1.10.10.10 116 177 8.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0894 e14a64ab4cf2e5fe15b7fbca4d98fe4e 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 169 1.0E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_0894 e14a64ab4cf2e5fe15b7fbca4d98fe4e 178 SUPERFAMILY SSF88659 114 175 9.35E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 89 104 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 Gene3D G3DSA:1.20.1740.10 54 443 5.7E-7 T 13-10-2018 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 Pfam PF01235 Sodium:alanine symporter family 49 441 7.6E-146 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 TIGRFAM TIGR00835 agcS: amino acid carrier protein 15 437 2.3E-152 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 PRINTS PR00175 Sodium/alanine symporter signature 89 111 3.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 PRINTS PR00175 Sodium/alanine symporter signature 406 426 3.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 PRINTS PR00175 Sodium/alanine symporter signature 303 321 3.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 PRINTS PR00175 Sodium/alanine symporter signature 180 198 3.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 PRINTS PR00175 Sodium/alanine symporter signature 208 227 3.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2884 4b2aee8edfbdda1c1dca6096b12804c0 444 PRINTS PR00175 Sodium/alanine symporter signature 347 369 3.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2135 e8e1f3aa61465550befc9ea82f376e62 113 Gene3D G3DSA:3.30.70.1990 29 113 4.1E-12 T 13-10-2018 CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 6 466 17.351 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 Pfam PF03023 MviN-like protein 31 466 1.8E-90 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PIRSF PIRSF002869 1 512 1.1E-121 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PRINTS PR01806 Virulence factor MviN signature 36 55 9.4E-17 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PRINTS PR01806 Virulence factor MviN signature 258 284 9.4E-17 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PRINTS PR01806 Virulence factor MviN signature 134 158 9.4E-17 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PRINTS PR01806 Virulence factor MviN signature 356 375 9.4E-17 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PRINTS PR01806 Virulence factor MviN signature 158 179 9.4E-17 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 PRINTS PR01806 Virulence factor MviN signature 408 425 9.4E-17 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_3501 1fcfd5a1f03206a31f5de24dd69d5508 518 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 6 507 3.3E-106 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CLM_1064 e77d2e2d6d1f0c4c4eb81f058f4bd729 239 TIGRFAM TIGR00123 cbiM: cobalamin biosynthesis protein CbiM 24 231 3.7E-86 T 13-10-2018 IPR018024 Cobalamin (vitamin B12) transport protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 CLM_1064 e77d2e2d6d1f0c4c4eb81f058f4bd729 239 Gene3D G3DSA:1.10.1760.20 24 232 9.1E-58 T 13-10-2018 CLM_1064 e77d2e2d6d1f0c4c4eb81f058f4bd729 239 Hamap MF_01462 Cobalt transport protein CbiM [cbiM]. 24 237 28.401 T 13-10-2018 IPR018024 Cobalamin (vitamin B12) transport protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 CLM_1064 e77d2e2d6d1f0c4c4eb81f058f4bd729 239 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 25 231 2.2E-57 T 13-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 CLM_2739 f5ed008805062060cb3ba78d70400de0 164 Pfam PF05239 PRC-barrel domain 92 159 3.3E-9 T 13-10-2018 IPR027275 PRC-barrel domain CLM_2739 f5ed008805062060cb3ba78d70400de0 164 SUPERFAMILY SSF50346 93 159 9.03E-18 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CLM_2739 f5ed008805062060cb3ba78d70400de0 164 SUPERFAMILY SSF50447 3 83 3.18E-18 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CLM_2739 f5ed008805062060cb3ba78d70400de0 164 Gene3D G3DSA:2.40.30.60 4 85 1.6E-19 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 CLM_2739 f5ed008805062060cb3ba78d70400de0 164 Pfam PF01782 RimM N-terminal domain 7 83 6.4E-21 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 CLM_2739 f5ed008805062060cb3ba78d70400de0 164 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 4 161 22.72 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CLM_2739 f5ed008805062060cb3ba78d70400de0 164 Gene3D G3DSA:2.30.30.240 88 162 9.2E-19 T 13-10-2018 CLM_2739 f5ed008805062060cb3ba78d70400de0 164 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 159 2.5E-45 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CLM_3042 a1250b8875fd73134fc42a32d02f455f 476 Pfam PF13440 Polysaccharide biosynthesis protein 39 269 3.5E-8 T 13-10-2018 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 Gene3D G3DSA:1.10.390.10 415 571 5.5E-51 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 Gene3D G3DSA:3.10.170.10 254 414 3.9E-42 T 13-10-2018 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 Pfam PF03413 Peptidase propeptide and YPEB domain 148 212 2.6E-6 T 13-10-2018 IPR025711 PepSY domain CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 SUPERFAMILY SSF55486 251 571 2.01E-81 T 13-10-2018 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 413 571 9.7E-53 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 85 133 2.1E-7 T 13-10-2018 IPR011096 FTP domain CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 489 505 2.4E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 363 383 2.4E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 422 433 2.4E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 401 417 2.4E-18 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CLM_1609 56e2f8266faa595be1063600dc54b2d3 579 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 256 410 3.6E-44 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 CLM_2976 e739d2fd86ced5d769aaa30c2ba9f489 233 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 4 194 1.2E-59 T 13-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated CLM_2976 e739d2fd86ced5d769aaa30c2ba9f489 233 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 55 160 2.1E-25 T 13-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated CLM_2976 e739d2fd86ced5d769aaa30c2ba9f489 233 SUPERFAMILY SSF53448 5 202 1.07E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2976 e739d2fd86ced5d769aaa30c2ba9f489 233 Gene3D G3DSA:3.90.550.10 1 220 5.2E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 341 364 3.9E-8 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 323 332 3.9E-8 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 67 86 3.9E-8 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 SUPERFAMILY SSF53671 18 374 2.23E-58 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 PRINTS PR00101 Aspartate carbamoyltransferase signature 95 104 2.6E-6 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 PRINTS PR00101 Aspartate carbamoyltransferase signature 164 181 2.6E-6 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 PRINTS PR00101 Aspartate carbamoyltransferase signature 57 79 2.6E-6 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 TIGRFAM TIGR03316 ygeW: knotted carbamoyltransferase YgeW 4 394 1.5E-239 T 13-10-2018 IPR017702 Putative carbamoyltransferase YgeW CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 187 374 2.8E-46 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 Gene3D G3DSA:3.40.50.1370 6 391 6.4E-207 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 24 176 3.9E-27 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CLM_3281 3fbf9d8ff3b1ba62b577e71973d34c84 398 Gene3D G3DSA:3.40.50.1370 168 363 6.4E-207 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CLM_1723 7c0a42937cf37276fd79633e52ca2414 223 Gene3D G3DSA:3.40.50.300 2 222 3.1E-55 T 13-10-2018 CLM_1723 7c0a42937cf37276fd79633e52ca2414 223 Pfam PF00005 ABC transporter 23 159 6.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1723 7c0a42937cf37276fd79633e52ca2414 223 SUPERFAMILY SSF52540 5 220 4.14E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1723 7c0a42937cf37276fd79633e52ca2414 223 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1723 7c0a42937cf37276fd79633e52ca2414 223 SMART SM00382 22 209 2.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0477 2c5ea9f650d14008be72a89c521f57aa 201 Gene3D G3DSA:3.40.50.880 1 201 3.6E-64 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0477 2c5ea9f650d14008be72a89c521f57aa 201 SUPERFAMILY SSF52317 4 187 1.06E-41 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0477 2c5ea9f650d14008be72a89c521f57aa 201 Pfam PF01965 DJ-1/PfpI family 4 167 7.9E-24 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CLM_3591 954e4df639a009c8bfb2912d93ad14ad 231 Gene3D G3DSA:1.10.101.10 158 228 7.2E-13 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CLM_3591 954e4df639a009c8bfb2912d93ad14ad 231 Pfam PF03734 L,D-transpeptidase catalytic domain 44 149 5.2E-21 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CLM_3591 954e4df639a009c8bfb2912d93ad14ad 231 SUPERFAMILY SSF141523 40 150 1.31E-31 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_3591 954e4df639a009c8bfb2912d93ad14ad 231 SUPERFAMILY SSF47090 160 226 1.79E-13 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_3591 954e4df639a009c8bfb2912d93ad14ad 231 Gene3D G3DSA:2.40.440.10 36 150 1.6E-36 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_3591 954e4df639a009c8bfb2912d93ad14ad 231 Pfam PF01471 Putative peptidoglycan binding domain 169 212 4.9E-9 T 13-10-2018 IPR002477 Peptidoglycan binding-like CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 SUPERFAMILY SSF55874 327 461 1.44E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 Gene3D G3DSA:1.10.287.130 197 311 3.2E-22 T 13-10-2018 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 SMART SM00387 360 461 2.7E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 SMART SM00388 252 317 9.4E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 SMART SM00304 199 251 7.5E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 Pfam PF00672 HAMP domain 200 247 2.5E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 SUPERFAMILY SSF158472 200 248 1.2E-9 T 13-10-2018 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 Gene3D G3DSA:3.30.565.10 326 462 1.8E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 7.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 7.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 7.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 SUPERFAMILY SSF47384 235 312 1.29E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 255 313 9.1E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0354 95a06976e18c4265bcb4e8188e9fd64b 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 458 4.8E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 SMART SM00535 23 156 2.5E-57 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 Gene3D G3DSA:1.10.1520.10 6 154 1.2E-47 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 Gene3D G3DSA:3.30.160.20 162 229 1.5E-22 T 13-10-2018 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 Pfam PF00035 Double-stranded RNA binding motif 163 229 1.3E-17 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 SMART SM00358 163 230 5.0E-21 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 SUPERFAMILY SSF69065 5 165 2.96E-49 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 ProSitePatterns PS00517 Ribonuclease III family signature. 45 53 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 Hamap MF_00104 Ribonuclease 3 [rnc]. 7 226 30.247 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 12 229 1.5E-78 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 Pfam PF14622 Ribonuclease-III-like 21 147 2.9E-43 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CLM_2748 e57fa572e6e3223297b1f09e1925f476 234 SUPERFAMILY SSF54768 117 230 6.14E-24 T 13-10-2018 CLM_1969 459e0d7f7ced35aa4485faf127377b7c 294 SUPERFAMILY SSF46689 7 83 2.69E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1969 459e0d7f7ced35aa4485faf127377b7c 294 Gene3D G3DSA:3.40.50.10490 98 283 2.2E-37 T 13-10-2018 CLM_1969 459e0d7f7ced35aa4485faf127377b7c 294 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 80 3.7E-14 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CLM_1969 459e0d7f7ced35aa4485faf127377b7c 294 SUPERFAMILY SSF53697 103 269 2.22E-29 T 13-10-2018 CLM_1969 459e0d7f7ced35aa4485faf127377b7c 294 Gene3D G3DSA:1.10.10.10 3 81 2.2E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1969 459e0d7f7ced35aa4485faf127377b7c 294 Pfam PF01380 SIS domain 132 258 2.6E-28 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CLM_2279 0234365f5df0fbaa93dcd89f69bd62d5 393 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 226 367 2.7E-16 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 CLM_2279 0234365f5df0fbaa93dcd89f69bd62d5 393 Gene3D G3DSA:3.40.50.2000 4 384 6.4E-115 T 13-10-2018 CLM_2279 0234365f5df0fbaa93dcd89f69bd62d5 393 Gene3D G3DSA:3.40.50.2000 213 372 6.4E-115 T 13-10-2018 CLM_2279 0234365f5df0fbaa93dcd89f69bd62d5 393 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 7 387 7.9E-97 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 CLM_2279 0234365f5df0fbaa93dcd89f69bd62d5 393 SUPERFAMILY SSF53756 1 387 7.59E-73 T 13-10-2018 CLM_1847 8dc7635122e50eb9441803276ce90701 552 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 489 506 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1847 8dc7635122e50eb9441803276ce90701 552 TIGRFAM TIGR02003 PTS-II-BC-unk1: PTS system, IIBC component 5 551 4.1E-282 T 13-10-2018 IPR011300 Phosphotransferase system, IIBC component KEGG: 00010+2.7.1.199|KEGG: 00520+2.7.1.199 CLM_1847 8dc7635122e50eb9441803276ce90701 552 Pfam PF02378 Phosphotransferase system, EIIC 16 379 6.4E-54 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_1847 8dc7635122e50eb9441803276ce90701 552 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 440 536 2.8E-15 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CLM_1847 8dc7635122e50eb9441803276ce90701 552 Gene3D G3DSA:3.30.1360.60 472 552 6.7E-25 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_1847 8dc7635122e50eb9441803276ce90701 552 Pfam PF00367 phosphotransferase system, EIIB 479 510 6.7E-13 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_1847 8dc7635122e50eb9441803276ce90701 552 SUPERFAMILY SSF55604 478 550 2.09E-17 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_0206 b558e0591c938e9fc6f2f9ae33566c41 84 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CLM_0206 b558e0591c938e9fc6f2f9ae33566c41 84 SUPERFAMILY SSF46689 2 49 6.36E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0206 b558e0591c938e9fc6f2f9ae33566c41 84 TIGRFAM TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID 2 80 1.1E-48 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID CLM_0206 b558e0591c938e9fc6f2f9ae33566c41 84 Gene3D G3DSA:1.10.10.60 1 84 3.0E-40 T 13-10-2018 CLM_0206 b558e0591c938e9fc6f2f9ae33566c41 84 Pfam PF12116 Stage III sporulation protein D 2 81 1.2E-44 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID CLM_0533 e3f64a1acedeff21b35d1b696e490eea 266 Pfam PF08543 Phosphomethylpyrimidine kinase 11 252 1.4E-98 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CLM_0533 e3f64a1acedeff21b35d1b696e490eea 266 SUPERFAMILY SSF53613 1 259 7.17E-85 T 13-10-2018 IPR029056 Ribokinase-like CLM_0533 e3f64a1acedeff21b35d1b696e490eea 266 Gene3D G3DSA:3.40.1190.20 1 264 8.6E-104 T 13-10-2018 IPR029056 Ribokinase-like CLM_0533 e3f64a1acedeff21b35d1b696e490eea 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 4 255 6.2E-103 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_2988 9d06868913d1a65b5d0105788432986d 461 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 340 349 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2988 9d06868913d1a65b5d0105788432986d 461 PIRSF PIRSF039114 1 461 8.7E-243 T 13-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2988 9d06868913d1a65b5d0105788432986d 461 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 2 458 60.081 T 13-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2988 9d06868913d1a65b5d0105788432986d 461 SUPERFAMILY SSF47917 361 420 4.71E-6 T 13-10-2018 CLM_2988 9d06868913d1a65b5d0105788432986d 461 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 131 349 3.3E-67 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2988 9d06868913d1a65b5d0105788432986d 461 SUPERFAMILY SSF52540 78 354 7.08E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2988 9d06868913d1a65b5d0105788432986d 461 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 74 4.6E-10 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CLM_2988 9d06868913d1a65b5d0105788432986d 461 Gene3D G3DSA:3.40.50.12240 1 458 2.2E-186 T 13-10-2018 CLM_1434 8dc8e0a957610fc9c2efb7d8b1e3b015 121 Pfam PF14276 Domain of unknown function (DUF4363) 12 112 1.7E-9 T 13-10-2018 IPR025373 Protein of unknown function DUF4363 CLM_2501 4192ce4eb1233e29c48be18529d96489 84 Pfam PF10779 Haemolysin XhlA 13 78 1.9E-22 T 13-10-2018 IPR019715 Haemolysin XhlA CLM_0040 3bbfad310def63b000ebee37b1ae4995 87 Pfam PF10704 Protein of unknown function (DUF2508) 9 75 3.7E-15 T 13-10-2018 IPR019644 Protein of unknown function DUF2508 CLM_3839 c4d83c21975d5f9cb9be9253800be955 294 SUPERFAMILY SSF52540 1 152 4.92E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3839 c4d83c21975d5f9cb9be9253800be955 294 PIRSF PIRSF005052 1 288 1.2E-110 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CLM_3839 c4d83c21975d5f9cb9be9253800be955 294 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 285 41.898 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CLM_3839 c4d83c21975d5f9cb9be9253800be955 294 Pfam PF03668 P-loop ATPase protein family 1 284 6.9E-104 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CLM_3839 c4d83c21975d5f9cb9be9253800be955 294 Gene3D G3DSA:3.40.50.300 37 163 6.5E-9 T 13-10-2018 CLM_1764 b081cf5829c19ba76d38b01f7446fbd2 117 SUPERFAMILY SSF46785 12 111 3.15E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1764 b081cf5829c19ba76d38b01f7446fbd2 117 Gene3D G3DSA:1.10.10.10 4 116 2.5E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1764 b081cf5829c19ba76d38b01f7446fbd2 117 Pfam PF01638 HxlR-like helix-turn-helix 25 113 4.9E-39 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type CLM_3920 930462988ff043124525fbefbbc5226f 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 5.0E-74 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_3920 930462988ff043124525fbefbbc5226f 206 Pfam PF01479 S4 domain 98 145 1.9E-21 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3920 930462988ff043124525fbefbbc5226f 206 Gene3D G3DSA:1.10.1050.10 6 206 2.0E-86 T 13-10-2018 CLM_3920 930462988ff043124525fbefbbc5226f 206 SMART SM00363 98 160 2.2E-20 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3920 930462988ff043124525fbefbbc5226f 206 SMART SM01390 3 97 2.2E-56 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CLM_3920 930462988ff043124525fbefbbc5226f 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3920 930462988ff043124525fbefbbc5226f 206 SUPERFAMILY SSF55174 3 206 4.32E-72 T 13-10-2018 CLM_3920 930462988ff043124525fbefbbc5226f 206 Gene3D G3DSA:3.10.290.10 97 191 2.0E-86 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_3920 930462988ff043124525fbefbbc5226f 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 2.2E-34 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CLM_3920 930462988ff043124525fbefbbc5226f 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.3 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CLM_0822 1c1c922b9c40c7a91667a37760c7a07c 188 SUPERFAMILY SSF55729 3 160 3.35E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0822 1c1c922b9c40c7a91667a37760c7a07c 188 Pfam PF13302 Acetyltransferase (GNAT) domain 11 151 3.8E-27 T 13-10-2018 IPR000182 GNAT domain CLM_0822 1c1c922b9c40c7a91667a37760c7a07c 188 Gene3D G3DSA:3.40.630.30 2 185 3.8E-42 T 13-10-2018 CLM_1950 ee21a5bec361d3a52d0b3f503f403b81 326 Gene3D G3DSA:1.10.443.10 134 325 1.2E-52 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_1950 ee21a5bec361d3a52d0b3f503f403b81 326 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 17 50 1.7E-5 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CLM_1950 ee21a5bec361d3a52d0b3f503f403b81 326 Gene3D G3DSA:1.10.150.130 14 128 8.6E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_1950 ee21a5bec361d3a52d0b3f503f403b81 326 SUPERFAMILY SSF56349 15 318 3.53E-51 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_1950 ee21a5bec361d3a52d0b3f503f403b81 326 Pfam PF00589 Phage integrase family 142 310 4.0E-41 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_0550 6e7271ae3450c1bd4cae0d84283de9b7 174 Pfam PF12822 ECF transporter, substrate-specific component 7 162 5.8E-14 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 CLM_0550 6e7271ae3450c1bd4cae0d84283de9b7 174 Gene3D G3DSA:1.10.1760.20 5 171 1.1E-21 T 13-10-2018 CLM_1660 477fa35cab5f355f71c52197264cfc23 85 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 3 84 2.6E-16 T 13-10-2018 IPR006450 Phage protein of unkonwn function CLM_1660 477fa35cab5f355f71c52197264cfc23 85 Pfam PF05135 Phage gp6-like head-tail connector protein 1 83 7.3E-15 T 13-10-2018 IPR021146 Phage gp6-like head-tail connector protein CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 SUPERFAMILY SSF54862 195 257 3.28E-16 T 13-10-2018 CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 SUPERFAMILY SSF52218 1 146 5.37E-20 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 226 237 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 Gene3D G3DSA:3.30.70.20 185 251 6.3E-11 T 13-10-2018 CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 Pfam PF00037 4Fe-4S binding domain 221 241 7.2E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 Pfam PF00037 4Fe-4S binding domain 195 213 8.4E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 Gene3D G3DSA:3.40.50.360 4 148 2.5E-18 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0045 470ec02caff7c4c0a7a20708cb53276e 262 Pfam PF12724 Flavodoxin domain 5 90 1.1E-9 T 13-10-2018 IPR026816 Flavodoxin domain CLM_3104 f365c9ba11a22434e58c0f44454de193 143 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 141 26.022 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 CLM_3104 f365c9ba11a22434e58c0f44454de193 143 Pfam PF02623 FliW protein 19 138 9.4E-38 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 CLM_3104 f365c9ba11a22434e58c0f44454de193 143 SUPERFAMILY SSF141457 1 141 5.62E-47 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily CLM_3104 f365c9ba11a22434e58c0f44454de193 143 Gene3D G3DSA:2.30.290.10 1 143 2.6E-48 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily CLM_0501 4c10b00159e93070c0ea1c7129cefd25 588 Pfam PF03553 Na+/H+ antiporter family 19 199 2.7E-6 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CLM_0501 4c10b00159e93070c0ea1c7129cefd25 588 Pfam PF03553 Na+/H+ antiporter family 206 538 3.2E-60 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 226 5.6E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 Gene3D G3DSA:1.10.10.10 130 230 7.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 SMART SM00448 3 113 4.4E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 SMART SM00862 150 226 1.6E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 SUPERFAMILY SSF52172 3 184 4.25E-40 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 Pfam PF00072 Response regulator receiver domain 5 112 1.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3797 c81df300fa169d54c09a0aa82b9d2cf8 230 Gene3D G3DSA:3.40.50.2300 1 129 6.0E-39 T 13-10-2018 CLM_2328 70f31edcc490f6744c068dd33d0ecf40 102 Pfam PF00936 BMC domain 6 83 1.5E-26 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2328 70f31edcc490f6744c068dd33d0ecf40 102 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 5 63 3.0E-22 T 13-10-2018 CLM_2328 70f31edcc490f6744c068dd33d0ecf40 102 SUPERFAMILY SSF143414 4 95 1.14E-31 T 13-10-2018 IPR037233 CcmK-like superfamily CLM_2328 70f31edcc490f6744c068dd33d0ecf40 102 Gene3D G3DSA:3.30.70.1710 1 99 1.7E-38 T 13-10-2018 CLM_2328 70f31edcc490f6744c068dd33d0ecf40 102 SMART SM00877 5 83 2.0E-34 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2624 f4bc7251c4dcd83b9511cde89c7a3b4d 179 SUPERFAMILY SSF46934 4 46 4.93E-9 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 CLM_2624 f4bc7251c4dcd83b9511cde89c7a3b4d 179 Gene3D G3DSA:1.10.8.10 1 47 5.6E-6 T 13-10-2018 CLM_4116 afc69b505444c641947c5f14d63d83a0 269 Pfam PF03618 Kinase/pyrophosphorylase 4 260 6.9E-90 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 CLM_4116 afc69b505444c641947c5f14d63d83a0 269 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 2 265 57.413 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CLM_3744 e3baa0c9c5f5f5a4c78365c3aa123e7e 472 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 316 426 3.4E-24 T 13-10-2018 IPR025299 CstA, C-terminal domain CLM_3744 e3baa0c9c5f5f5a4c78365c3aa123e7e 472 Pfam PF02554 Carbon starvation protein CstA 4 142 1.2E-31 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 CLM_1666 7588f726a178e51df9df4a96c920cdcf 361 Gene3D G3DSA:1.10.10.2290 149 227 5.1E-33 T 13-10-2018 CLM_1666 7588f726a178e51df9df4a96c920cdcf 361 ProDom PD032508 PHAGE-LIKE PBSX XKDK ELEMENT PHAGE LIN1278 SHEATH YQBL RELATED TAIL 227 289 3.0E-4 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CLM_1666 7588f726a178e51df9df4a96c920cdcf 361 Pfam PF17482 Phage tail sheath C-terminal domain 236 360 1.0E-20 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CLM_1666 7588f726a178e51df9df4a96c920cdcf 361 Gene3D G3DSA:3.40.50.11790 101 256 5.1E-33 T 13-10-2018 CLM_3165 42ec6f89b0f2588a02bd9835663dac7d 243 Gene3D G3DSA:3.20.20.370 23 236 2.0E-61 T 13-10-2018 CLM_3165 42ec6f89b0f2588a02bd9835663dac7d 243 Pfam PF01522 Polysaccharide deacetylase 39 161 4.1E-29 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_3165 42ec6f89b0f2588a02bd9835663dac7d 243 SUPERFAMILY SSF88713 39 228 1.14E-50 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_0521 0e80b2c95d26eeb8c4a33f5eb0e89584 310 Gene3D G3DSA:3.40.1090.10 112 295 2.9E-18 T 13-10-2018 CLM_0521 0e80b2c95d26eeb8c4a33f5eb0e89584 310 SUPERFAMILY SSF52151 6 300 4.71E-36 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_0521 0e80b2c95d26eeb8c4a33f5eb0e89584 310 Gene3D G3DSA:3.40.1090.20 2 96 3.9E-17 T 13-10-2018 CLM_0521 0e80b2c95d26eeb8c4a33f5eb0e89584 310 Pfam PF01734 Patatin-like phospholipase 6 198 8.9E-25 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CLM_3197 66fe3e1d8bd9b5b5dc06ddd763057a51 244 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 13-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 CLM_3197 66fe3e1d8bd9b5b5dc06ddd763057a51 244 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 242 2.3E-94 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 CLM_3197 66fe3e1d8bd9b5b5dc06ddd763057a51 244 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 241 44.4 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 CLM_3197 66fe3e1d8bd9b5b5dc06ddd763057a51 244 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 27 227 2.2E-18 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 CLM_3197 66fe3e1d8bd9b5b5dc06ddd763057a51 244 SUPERFAMILY SSF100950 1 243 8.38E-95 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_3197 66fe3e1d8bd9b5b5dc06ddd763057a51 244 Gene3D G3DSA:3.40.50.1360 1 244 9.7E-100 T 13-10-2018 CLM_0852 868e35b5ec158298366108d67f8ac401 752 Pfam PF13245 AAA domain 212 560 2.5E-12 T 13-10-2018 CLM_0852 868e35b5ec158298366108d67f8ac401 752 SUPERFAMILY SSF52540 201 738 4.0E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0852 868e35b5ec158298366108d67f8ac401 752 Gene3D G3DSA:3.40.50.300 584 749 2.5E-48 T 13-10-2018 CLM_1052 283931da18e29573bf4cf5e4ac36b4fa 181 PIRSF PIRSF016661 1 181 1.1E-48 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CLM_1052 283931da18e29573bf4cf5e4ac36b4fa 181 Gene3D G3DSA:1.10.1760.20 1 180 1.9E-55 T 13-10-2018 CLM_1052 283931da18e29573bf4cf5e4ac36b4fa 181 Pfam PF02632 BioY family 32 173 4.5E-39 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CLM_4013 e97da3af070274584bb02d9fe6a7067f 795 SUPERFAMILY SSF81606 586 788 4.71E-16 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_4013 e97da3af070274584bb02d9fe6a7067f 795 TIGRFAM TIGR02865 spore_II_E: stage II sporulation protein E 34 792 0.0 T 13-10-2018 IPR014221 Sporulation stage II, protein E KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_4013 e97da3af070274584bb02d9fe6a7067f 795 Gene3D G3DSA:3.60.40.10 573 793 6.4E-40 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_4013 e97da3af070274584bb02d9fe6a7067f 795 SMART SM00331 578 791 1.4E-26 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_4013 e97da3af070274584bb02d9fe6a7067f 795 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 606 791 2.0E-30 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_1559 fe44658913b103d757aa023c2b4d2b50 183 SUPERFAMILY SSF55469 1 182 4.84E-46 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_1559 fe44658913b103d757aa023c2b4d2b50 183 Pfam PF00881 Nitroreductase family 8 163 3.3E-34 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1559 fe44658913b103d757aa023c2b4d2b50 183 Gene3D G3DSA:3.40.109.10 1 181 1.2E-50 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_3155 e4671b2a7811a1ca2602905288e898b1 298 SUPERFAMILY SSF52540 2 222 1.25E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3155 e4671b2a7811a1ca2602905288e898b1 298 Gene3D G3DSA:3.40.50.300 1 238 2.9E-54 T 13-10-2018 CLM_3155 e4671b2a7811a1ca2602905288e898b1 298 Pfam PF00005 ABC transporter 17 155 2.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3155 e4671b2a7811a1ca2602905288e898b1 298 SMART SM00382 26 212 3.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 15 30 3.7E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 3.7E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 3.7E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 SMART SM00418 13 92 5.9E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 Gene3D G3DSA:1.10.10.10 1 93 3.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 Pfam PF12840 Helix-turn-helix domain 12 70 7.4E-12 T 13-10-2018 CLM_0230 df542cf2874494c501c8efc435a1d6e7 93 SUPERFAMILY SSF46785 3 92 2.55E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1033 15a8f5db765340d5a68697e72f63c128 50 Gene3D G3DSA:3.40.50.360 1 50 1.6E-8 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1033 15a8f5db765340d5a68697e72f63c128 50 SUPERFAMILY SSF52218 1 45 2.79E-10 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1033 15a8f5db765340d5a68697e72f63c128 50 Pfam PF03358 NADPH-dependent FMN reductase 1 45 1.1E-5 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 Pfam PF03600 Citrate transporter 12 361 1.2E-56 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 PRINTS PR00758 Arsenical pump membrane protein signature 270 294 5.8E-15 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 PRINTS PR00758 Arsenical pump membrane protein signature 315 337 5.8E-15 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 PRINTS PR00758 Arsenical pump membrane protein signature 97 121 5.8E-15 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 PRINTS PR00758 Arsenical pump membrane protein signature 357 382 5.8E-15 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 PRINTS PR00758 Arsenical pump membrane protein signature 390 414 5.8E-15 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CLM_0589 1f39ec3ec76637745b66d4d28a854170 420 PRINTS PR00758 Arsenical pump membrane protein signature 213 238 5.8E-15 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 SUPERFAMILY SSF46894 125 222 4.25E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 SUPERFAMILY SSF52172 1 125 1.99E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 Gene3D G3DSA:1.10.10.10 128 223 3.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 Pfam PF00072 Response regulator receiver domain 4 112 1.6E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 222 1.3E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 SMART SM00448 2 112 1.8E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 SMART SM00862 147 222 6.4E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_2347 7a42bc20bb35c0e701a74db95ae21538 223 Gene3D G3DSA:3.40.50.2300 1 127 5.4E-32 T 13-10-2018 CLM_2032 610012447f9eaa773b43b4fa43538ea0 252 SUPERFAMILY SSF54001 27 140 1.8E-43 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_2032 610012447f9eaa773b43b4fa43538ea0 252 Gene3D G3DSA:3.90.1720.10 20 142 4.9E-50 T 13-10-2018 CLM_2032 610012447f9eaa773b43b4fa43538ea0 252 Pfam PF00877 NlpC/P60 family 43 138 4.7E-29 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 6.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 6.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 6.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 6.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 Pfam PF01047 MarR family 35 93 5.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 SMART SM00347 28 128 2.1E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 Gene3D G3DSA:1.10.10.10 7 158 7.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_4097 c88eae5442d3737b69bacf9ec5b2b5d6 158 SUPERFAMILY SSF46785 11 144 4.28E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3874 3ec827f02a4a8fc63716a4254e241b6e 167 SUPERFAMILY SSF49329 21 157 2.36E-41 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CLM_3874 3ec827f02a4a8fc63716a4254e241b6e 167 Gene3D G3DSA:2.60.40.200 7 164 1.8E-39 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CLM_3874 3ec827f02a4a8fc63716a4254e241b6e 167 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 145 156 - T 13-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CLM_3874 3ec827f02a4a8fc63716a4254e241b6e 167 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 22 156 7.1E-36 T 13-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 Gene3D G3DSA:3.40.50.11030 217 351 9.0E-42 T 13-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 10 208 5.4E-70 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 Pfam PF01300 Telomere recombination 24 199 2.7E-58 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 PIRSF PIRSF004930 1 350 9.3E-132 T 13-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 Pfam PF03481 Putative GTP-binding controlling metal-binding 201 344 3.9E-27 T 13-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 SUPERFAMILY SSF55821 7 211 5.8E-65 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLM_0185 a3f756d0c1bc0dcacaba81b351b1533f 351 Gene3D G3DSA:3.90.870.10 2 214 3.9E-82 T 13-10-2018 CLM_0872 159b760bbcbee68b61183ac2e7bae2a3 257 Gene3D G3DSA:3.40.50.150 54 256 8.7E-30 T 13-10-2018 CLM_0872 159b760bbcbee68b61183ac2e7bae2a3 257 Pfam PF08241 Methyltransferase domain 66 162 5.0E-19 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CLM_0872 159b760bbcbee68b61183ac2e7bae2a3 257 SUPERFAMILY SSF53335 54 247 4.87E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3059 c53c1c6b857867ff6caf413576e697ae 282 SUPERFAMILY SSF58104 115 279 5.36E-46 T 13-10-2018 CLM_3059 c53c1c6b857867ff6caf413576e697ae 282 Gene3D G3DSA:1.10.287.950 102 282 2.8E-42 T 13-10-2018 CLM_3059 c53c1c6b857867ff6caf413576e697ae 282 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 138 273 1.2E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3059 c53c1c6b857867ff6caf413576e697ae 282 SMART SM00283 93 282 2.4E-14 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_3236 b32d8be37979d17834c5c7defd217390 344 TIGRFAM TIGR04432 rSAM_Cfr: 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr 4 340 5.7E-187 T 13-10-2018 IPR022881 Ribosomal RNA large subunit methyltransferase, Cfr GO:0070475 MetaCyc: PWY-6828 CLM_3236 b32d8be37979d17834c5c7defd217390 344 Gene3D G3DSA:3.20.20.70 66 329 5.3E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3236 b32d8be37979d17834c5c7defd217390 344 Gene3D G3DSA:1.10.150.530 4 59 8.9E-7 T 13-10-2018 CLM_3236 b32d8be37979d17834c5c7defd217390 344 PIRSF PIRSF006004 2 343 4.2E-100 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 CLM_3236 b32d8be37979d17834c5c7defd217390 344 Hamap MF_01873 Ribosomal RNA large subunit methyltransferase Cfr [cfr]. 2 344 66.212 T 13-10-2018 IPR022881 Ribosomal RNA large subunit methyltransferase, Cfr GO:0070475 MetaCyc: PWY-6828 CLM_3236 b32d8be37979d17834c5c7defd217390 344 Pfam PF04055 Radical SAM superfamily 107 265 7.9E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3236 b32d8be37979d17834c5c7defd217390 344 SUPERFAMILY SSF102114 105 311 4.19E-10 T 13-10-2018 CLM_2015 e748c67afa51256bee43fa73a778895b 146 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 33 116 6.7E-32 T 13-10-2018 IPR014229 Sporulation protein YtfJ CLM_2015 e748c67afa51256bee43fa73a778895b 146 TIGRFAM TIGR02874 spore_ytfJ: sporulation protein YtfJ 4 126 9.6E-63 T 13-10-2018 IPR014229 Sporulation protein YtfJ CLM_2015 e748c67afa51256bee43fa73a778895b 146 PIRSF PIRSF021377 1 146 1.3E-63 T 13-10-2018 IPR014229 Sporulation protein YtfJ CLM_0632 be13e000b23e5af42fb2a8d38d737415 290 Gene3D G3DSA:3.60.15.10 27 269 1.1E-62 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0632 be13e000b23e5af42fb2a8d38d737415 290 ProSitePatterns PS00743 Beta-lactamases class B signature 1. 81 100 - T 13-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 CLM_0632 be13e000b23e5af42fb2a8d38d737415 290 SMART SM00849 39 231 1.1E-4 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0632 be13e000b23e5af42fb2a8d38d737415 290 Pfam PF00753 Metallo-beta-lactamase superfamily 38 104 1.8E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0632 be13e000b23e5af42fb2a8d38d737415 290 SUPERFAMILY SSF56281 31 268 1.7E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 368 8.9E-18 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 359 2.1E-142 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 SMART SM00382 37 179 3.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 Pfam PF13177 DNA polymerase III, delta subunit 20 178 4.8E-46 T 13-10-2018 CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 Gene3D G3DSA:3.40.50.300 13 177 1.4E-102 T 13-10-2018 CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 Gene3D G3DSA:1.20.272.10 245 366 1.3E-10 T 13-10-2018 CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 Gene3D G3DSA:1.10.8.60 8 239 1.4E-102 T 13-10-2018 CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 SUPERFAMILY SSF52540 31 221 4.42E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0037 2bfe0433103215bcb21af3c6a45318b8 541 SUPERFAMILY SSF48019 243 365 1.87E-24 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CLM_0184 60bf280fd625b066e877d3579777e6dc 239 Pfam PF02535 ZIP Zinc transporter 92 234 7.7E-26 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 CLM_2405 ae1474dedffc51b7efaf3805943a7eea 199 SUPERFAMILY SSF55469 4 197 6.67E-69 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_2405 ae1474dedffc51b7efaf3805943a7eea 199 Gene3D G3DSA:3.40.109.10 2 199 1.3E-87 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_2405 ae1474dedffc51b7efaf3805943a7eea 199 Pfam PF00881 Nitroreductase family 9 178 2.5E-17 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1845 442715764538f65aa7ddb474979b7e8e 315 SUPERFAMILY SSF53067 5 312 4.6E-69 T 13-10-2018 CLM_1845 442715764538f65aa7ddb474979b7e8e 315 Pfam PF00480 ROK family 7 311 5.7E-78 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CLM_1845 442715764538f65aa7ddb474979b7e8e 315 Gene3D G3DSA:3.30.420.40 7 308 2.6E-100 T 13-10-2018 CLM_1845 442715764538f65aa7ddb474979b7e8e 315 Gene3D G3DSA:3.30.420.40 128 295 2.6E-100 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 405 636 8.5E-32 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 Gene3D G3DSA:3.50.50.60 501 621 3.5E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 SUPERFAMILY SSF51395 5 391 3.97E-91 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 527 545 9.6E-18 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 407 426 9.6E-18 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 489 507 9.6E-18 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 613 629 9.6E-18 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 Gene3D G3DSA:3.40.50.720 406 659 3.5E-62 T 13-10-2018 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 360 2.6E-63 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 SUPERFAMILY SSF51905 375 665 2.46E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2376 1320d8fe4aa9213e9404b8fe51c8dfd8 665 Gene3D G3DSA:3.20.20.70 1 404 1.0E-112 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0307 34af988fe4ea1b1740d0bbab1a439064 174 Pfam PF01872 RibD C-terminal domain 3 152 2.0E-17 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CLM_0307 34af988fe4ea1b1740d0bbab1a439064 174 SUPERFAMILY SSF53597 3 172 1.57E-30 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CLM_0307 34af988fe4ea1b1740d0bbab1a439064 174 Gene3D G3DSA:3.40.430.10 1 174 5.8E-40 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CLM_0302 9064023f80a96cf920f4a17360582367 487 Gene3D G3DSA:1.20.1740.10 12 480 3.9E-64 T 13-10-2018 CLM_0302 9064023f80a96cf920f4a17360582367 487 PIRSF PIRSF006060 1 480 1.2E-83 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0302 9064023f80a96cf920f4a17360582367 487 Pfam PF00324 Amino acid permease 22 467 5.1E-134 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 391 540 1.3E-37 T 13-10-2018 IPR000160 GGDEF domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 138 262 1.4E-9 T 13-10-2018 IPR000014 PAS domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 264 391 7.7E-14 T 13-10-2018 IPR000014 PAS domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SUPERFAMILY SSF55785 252 381 5.41E-18 T 13-10-2018 IPR035965 PAS domain superfamily CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SMART SM00471 561 696 5.2E-8 T 13-10-2018 IPR003607 HD/PDEase domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Pfam PF13487 HD domain 617 678 1.4E-22 T 13-10-2018 CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Gene3D G3DSA:3.30.450.20 121 253 2.1E-15 T 13-10-2018 CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SMART SM00267 384 553 2.6E-41 T 13-10-2018 IPR000160 GGDEF domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Gene3D G3DSA:3.30.450.20 254 381 2.5E-20 T 13-10-2018 CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Pfam PF13426 PAS domain 278 383 2.1E-10 T 13-10-2018 IPR000014 PAS domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Pfam PF13426 PAS domain 171 254 9.4E-4 T 13-10-2018 IPR000014 PAS domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SMART SM00091 141 215 2.5 T 13-10-2018 IPR000014 PAS domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SMART SM00091 267 332 0.0055 T 13-10-2018 IPR000014 PAS domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Pfam PF00990 Diguanylate cyclase, GGDEF domain 395 539 2.5E-35 T 13-10-2018 IPR000160 GGDEF domain CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SUPERFAMILY SSF55785 130 233 9.83E-12 T 13-10-2018 IPR035965 PAS domain superfamily CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SUPERFAMILY SSF55073 400 539 1.1E-33 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Gene3D G3DSA:3.30.70.270 382 542 1.1E-41 T 13-10-2018 CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 SUPERFAMILY SSF109604 566 724 4.97E-36 T 13-10-2018 CLM_1759 7b4c1776d73b36f9568c1a9699960862 732 Gene3D G3DSA:1.10.3210.10 543 730 7.5E-68 T 13-10-2018 CLM_1078 96cbfaa7e3d94f4f5c1d07a5dd887dfe 244 Pfam PF13476 AAA domain 31 83 1.7E-11 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain CLM_1078 96cbfaa7e3d94f4f5c1d07a5dd887dfe 244 Gene3D G3DSA:3.40.50.300 27 97 4.2E-11 T 13-10-2018 CLM_1078 96cbfaa7e3d94f4f5c1d07a5dd887dfe 244 SMART SM00382 39 211 8.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1078 96cbfaa7e3d94f4f5c1d07a5dd887dfe 244 Pfam PF13175 AAA ATPase domain 154 197 2.8E-8 T 13-10-2018 CLM_1078 96cbfaa7e3d94f4f5c1d07a5dd887dfe 244 SUPERFAMILY SSF52540 30 211 6.12E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1078 96cbfaa7e3d94f4f5c1d07a5dd887dfe 244 Gene3D G3DSA:3.40.50.300 98 216 1.6E-12 T 13-10-2018 CLM_0073 7401712182b9d1fda28d47863aa8ffad 93 Pfam PF04914 DltD protein 2 80 1.2E-5 T 13-10-2018 IPR006998 DltD CLM_2682 2e994a82e92c9972071a49e72625a797 257 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 15 105 2.6E-26 T 13-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family CLM_2682 2e994a82e92c9972071a49e72625a797 257 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 8 110 6.3E-21 T 13-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family CLM_3474 bbc0cc1527f481e033cf74d32d284651 341 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 341 47.272 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CLM_3474 bbc0cc1527f481e033cf74d32d284651 341 Pfam PF02547 Queuosine biosynthesis protein 4 340 2.2E-148 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CLM_3474 bbc0cc1527f481e033cf74d32d284651 341 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 340 2.8E-147 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CLM_3474 bbc0cc1527f481e033cf74d32d284651 341 Gene3D G3DSA:2.40.10.240 64 162 2.7E-137 T 13-10-2018 CLM_3474 bbc0cc1527f481e033cf74d32d284651 341 Gene3D G3DSA:3.40.1780.10 14 340 2.7E-137 T 13-10-2018 CLM_3474 bbc0cc1527f481e033cf74d32d284651 341 SUPERFAMILY SSF111337 2 340 3.14E-144 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 77 106 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 2 198 3.7E-57 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 SUPERFAMILY SSF54211 2 130 4.55E-40 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 SUPERFAMILY SSF54980 136 201 1.87E-8 T 13-10-2018 IPR035647 EF-G domain III/V-like CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 Gene3D G3DSA:3.30.230.30 1 131 5.8E-45 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 Pfam PF01205 Uncharacterized protein family UPF0029 17 120 2.2E-29 T 13-10-2018 IPR001498 Impact, N-terminal CLM_3479 4764c3a040dafb5aba70370afa4c189d 216 Pfam PF09186 Domain of unknown function (DUF1949) 139 193 4.1E-13 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CLM_0228 773198ff25b55e40c1c9b4758e010727 86 Gene3D G3DSA:3.40.1690.10 4 86 1.4E-22 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CLM_0228 773198ff25b55e40c1c9b4758e010727 86 SUPERFAMILY SSF160544 2 82 1.44E-21 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CLM_0228 773198ff25b55e40c1c9b4758e010727 86 Pfam PF01312 FlhB HrpN YscU SpaS Family 2 78 6.9E-19 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CLM_1044 444429cb60d5c6d50a0178491bf9da7a 125 SUPERFAMILY SSF55729 17 110 2.61E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1044 444429cb60d5c6d50a0178491bf9da7a 125 Pfam PF13302 Acetyltransferase (GNAT) domain 41 98 7.1E-6 T 13-10-2018 IPR000182 GNAT domain CLM_1044 444429cb60d5c6d50a0178491bf9da7a 125 Gene3D G3DSA:3.40.630.30 6 104 4.3E-19 T 13-10-2018 CLM_2011 844aa4443c341be45f735c8c0dc566b8 292 Pfam PF03747 ADP-ribosylglycohydrolase 9 269 4.0E-50 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 CLM_2011 844aa4443c341be45f735c8c0dc566b8 292 SUPERFAMILY SSF101478 2 289 3.27E-62 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily CLM_2011 844aa4443c341be45f735c8c0dc566b8 292 Gene3D G3DSA:1.10.4080.10 1 290 6.4E-73 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily CLM_2575 56f4ef4c6c251afbe22a93b757f34e2b 152 SMART SM00530 7 69 1.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2575 56f4ef4c6c251afbe22a93b757f34e2b 152 Pfam PF01381 Helix-turn-helix 10 69 8.2E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2575 56f4ef4c6c251afbe22a93b757f34e2b 152 SUPERFAMILY SSF47413 3 71 1.61E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2575 56f4ef4c6c251afbe22a93b757f34e2b 152 Gene3D G3DSA:1.10.260.40 6 152 2.0E-12 T 13-10-2018 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 Gene3D G3DSA:3.40.30.60 353 495 5.9E-53 T 13-10-2018 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 Gene3D G3DSA:1.10.8.540 496 584 9.4E-31 T 13-10-2018 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 136 159 - T 13-10-2018 IPR025505 FHIPEP conserved site CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PIRSF PIRSF005419 2 688 6.6E-258 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 Gene3D G3DSA:1.10.490.80 587 684 3.0E-23 T 13-10-2018 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 231 245 3.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 69 88 3.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 180 197 3.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 150 168 3.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 131 147 3.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 32 45 3.3E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 Pfam PF00771 FHIPEP family 25 677 1.9E-272 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CLM_3011 bdf82da00e5d82cad236709a2e59c44e 688 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 15 685 9.4E-261 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 CLM_2309 884669c760d0d038877a14b751fdf447 301 Pfam PF03547 Membrane transport protein 5 142 2.0E-15 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 SMART SM00345 17 76 6.6E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 Gene3D G3DSA:3.90.1150.10 118 482 1.5E-98 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 Gene3D G3DSA:3.40.640.10 156 375 1.5E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 SUPERFAMILY SSF46785 9 80 6.3E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 Gene3D G3DSA:1.10.10.10 1 77 2.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 Pfam PF00155 Aminotransferase class I and II 140 468 2.0E-29 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 4.0E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2383 02ff23cffc705fdfc23cd4832f75520e 497 SUPERFAMILY SSF53383 97 481 9.25E-84 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3867 b1e8b96efb63c09f71ee59a49085293e 285 PIRSF PIRSF035875 2 285 3.4E-79 T 13-10-2018 IPR017039 Virulence factor BrkB CLM_3867 b1e8b96efb63c09f71ee59a49085293e 285 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 14 271 3.5E-51 T 13-10-2018 IPR017039 Virulence factor BrkB CLM_3867 b1e8b96efb63c09f71ee59a49085293e 285 Pfam PF03631 Virulence factor BrkB 22 271 2.0E-65 T 13-10-2018 IPR017039 Virulence factor BrkB CLM_4089 897a6573fa4db3da3264f2cbe2d1313a 144 Pfam PF07977 FabA-like domain 14 137 3.6E-35 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CLM_4089 897a6573fa4db3da3264f2cbe2d1313a 144 SUPERFAMILY SSF54637 7 142 2.96E-45 T 13-10-2018 IPR029069 HotDog domain superfamily CLM_4089 897a6573fa4db3da3264f2cbe2d1313a 144 Gene3D G3DSA:3.10.129.10 1 144 3.2E-57 T 13-10-2018 CLM_4089 897a6573fa4db3da3264f2cbe2d1313a 144 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 5 141 1.2E-57 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CLM_4089 897a6573fa4db3da3264f2cbe2d1313a 144 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 5 144 33.919 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CLM_2409 af62131718b87801c4b50abd18f0facd 334 SUPERFAMILY SSF53659 5 331 1.6E-96 T 13-10-2018 CLM_2409 af62131718b87801c4b50abd18f0facd 334 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 8 327 5.4E-95 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CLM_2409 af62131718b87801c4b50abd18f0facd 334 Gene3D G3DSA:3.40.718.10 1 331 5.9E-122 T 13-10-2018 CLM_2409 af62131718b87801c4b50abd18f0facd 334 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 325 9.3E-98 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CLM_0861 8759ab52c106f3f451adb3a642597d19 208 SUPERFAMILY SSF52317 5 177 2.61E-27 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0861 8759ab52c106f3f451adb3a642597d19 208 Pfam PF01965 DJ-1/PfpI family 5 166 2.5E-21 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CLM_0861 8759ab52c106f3f451adb3a642597d19 208 Gene3D G3DSA:3.40.50.880 1 208 8.0E-43 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_3190 ddbd7fad2c6ca74c2822fa981d97e49c 132 Pfam PF16760 Starch/carbohydrate-binding module (family 53) 41 126 1.5E-16 T 13-10-2018 IPR005085 Carbohydrate binding module family 25 GO:2001070 CLM_3190 ddbd7fad2c6ca74c2822fa981d97e49c 132 Gene3D G3DSA:2.60.40.10 35 132 7.4E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_3190 ddbd7fad2c6ca74c2822fa981d97e49c 132 SMART SM01066 38 127 2.1E-30 T 13-10-2018 IPR005085 Carbohydrate binding module family 25 GO:2001070 CLM_0555 73a1641200f8d6b720f57efcc9b79000 409 SUPERFAMILY SSF56300 1 348 7.77E-54 T 13-10-2018 CLM_0555 73a1641200f8d6b720f57efcc9b79000 409 Pfam PF00149 Calcineurin-like phosphoesterase 1 240 2.5E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CLM_0555 73a1641200f8d6b720f57efcc9b79000 409 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 269 1.5E-53 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 CLM_0555 73a1641200f8d6b720f57efcc9b79000 409 Gene3D G3DSA:3.60.21.10 1 288 2.6E-73 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_0555 73a1641200f8d6b720f57efcc9b79000 409 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 301 379 7.0E-6 T 13-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 Gene3D G3DSA:3.90.550.10 5 227 2.2E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 Gene3D G3DSA:3.40.50.2000 359 492 2.0E-36 T 13-10-2018 CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 380 536 1.4E-10 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 SUPERFAMILY SSF53448 6 227 4.51E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 SUPERFAMILY SSF53756 370 544 1.65E-13 T 13-10-2018 CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 Pfam PF02348 Cytidylyltransferase 8 136 6.5E-23 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 CLM_3045 e2c5c052912b843ea7b4d58b38721e96 553 Gene3D G3DSA:3.40.50.11190 228 354 2.0E-9 T 13-10-2018 CLM_1492 6365079d61ac2941e88cb8fab90254d7 375 Pfam PF07907 YibE/F-like protein 131 368 1.1E-81 T 13-10-2018 IPR012507 YibE/F-like CLM_2498 d428917ee922c60b876e623c02e796ac 253 Gene3D G3DSA:3.40.630.40 1 173 2.6E-57 T 13-10-2018 CLM_2498 d428917ee922c60b876e623c02e796ac 253 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 167 2.6E-30 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2498 d428917ee922c60b876e623c02e796ac 253 SMART SM00287 192 249 2.1E-4 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2498 d428917ee922c60b876e623c02e796ac 253 Gene3D G3DSA:2.30.30.40 192 251 8.8E-17 T 13-10-2018 CLM_2498 d428917ee922c60b876e623c02e796ac 253 SUPERFAMILY SSF53187 1 169 4.08E-42 T 13-10-2018 CLM_2498 d428917ee922c60b876e623c02e796ac 253 Pfam PF08239 Bacterial SH3 domain 201 251 5.7E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2498 d428917ee922c60b876e623c02e796ac 253 SMART SM00646 65 168 3.3E-17 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3003 22ede671155645f4426681cd5be3e125 263 SUPERFAMILY SSF117143 90 223 6.28E-22 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLM_3003 22ede671155645f4426681cd5be3e125 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 134 4.6E-43 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLM_3003 22ede671155645f4426681cd5be3e125 263 Pfam PF00460 Flagella basal body rod protein 5 35 3.4E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CLM_3003 22ede671155645f4426681cd5be3e125 263 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 193 261 8.4E-19 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_3003 22ede671155645f4426681cd5be3e125 263 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CLM_2202 373aba32da3633112de73ea07175b674 626 Gene3D G3DSA:1.20.120.790 495 626 2.0E-34 T 13-10-2018 IPR037196 HSP90, C-terminal domain CLM_2202 373aba32da3633112de73ea07175b674 626 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 151 3.3E-11 T 13-10-2018 CLM_2202 373aba32da3633112de73ea07175b674 626 SUPERFAMILY SSF110942 511 625 3.79E-30 T 13-10-2018 IPR037196 HSP90, C-terminal domain CLM_2202 373aba32da3633112de73ea07175b674 626 SUPERFAMILY SSF54211 236 488 3.11E-80 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_2202 373aba32da3633112de73ea07175b674 626 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 22 31 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 CLM_2202 373aba32da3633112de73ea07175b674 626 Gene3D G3DSA:3.30.565.10 1 225 8.3E-72 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2202 373aba32da3633112de73ea07175b674 626 Gene3D G3DSA:3.30.230.80 235 407 1.9E-54 T 13-10-2018 CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 2 22 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 72 89 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 115 137 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 23 45 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 165 182 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 188 206 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 PRINTS PR00775 90kDa heat shock protein signature 90 107 4.5E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CLM_2202 373aba32da3633112de73ea07175b674 626 SUPERFAMILY SSF55874 1 212 7.39E-61 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_2202 373aba32da3633112de73ea07175b674 626 Gene3D G3DSA:3.40.50.11260 408 494 1.4E-28 T 13-10-2018 CLM_2202 373aba32da3633112de73ea07175b674 626 Pfam PF00183 Hsp90 protein 184 230 1.1E-7 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CLM_2202 373aba32da3633112de73ea07175b674 626 Pfam PF00183 Hsp90 protein 217 626 1.7E-110 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CLM_2202 373aba32da3633112de73ea07175b674 626 PIRSF PIRSF002583 1 626 1.2E-201 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CLM_2202 373aba32da3633112de73ea07175b674 626 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 626 26.507 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CLM_2609 4afea94573299b37a992c48af73d1b48 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 163 3.1E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_2609 4afea94573299b37a992c48af73d1b48 170 SUPERFAMILY SSF88659 97 166 1.2E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2609 4afea94573299b37a992c48af73d1b48 170 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 34 64 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_2609 4afea94573299b37a992c48af73d1b48 170 Gene3D G3DSA:1.10.10.10 92 168 5.0E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2609 4afea94573299b37a992c48af73d1b48 170 SUPERFAMILY SSF88946 6 88 2.51E-20 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2609 4afea94573299b37a992c48af73d1b48 170 Pfam PF04542 Sigma-70 region 2 13 78 5.6E-19 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_2609 4afea94573299b37a992c48af73d1b48 170 Gene3D G3DSA:1.10.1740.10 4 91 1.0E-18 T 13-10-2018 CLM_4138 0742354346baa19707bf5611293fbe1a 384 PIRSF PIRSF005572 1 384 3.0E-51 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CLM_4138 0742354346baa19707bf5611293fbe1a 384 Gene3D G3DSA:3.40.640.10 17 270 2.8E-111 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_4138 0742354346baa19707bf5611293fbe1a 384 Gene3D G3DSA:3.90.1150.10 3 373 2.8E-111 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_4138 0742354346baa19707bf5611293fbe1a 384 TIGRFAM TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein 3 380 7.5E-150 T 13-10-2018 IPR010969 Cysteine desulfurase-related, unknown function CLM_4138 0742354346baa19707bf5611293fbe1a 384 Pfam PF00266 Aminotransferase class-V 3 371 5.9E-83 T 13-10-2018 IPR000192 Aminotransferase class V domain CLM_4138 0742354346baa19707bf5611293fbe1a 384 SUPERFAMILY SSF53383 3 383 5.24E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3201 26bac73b4b196748555bc06f92a33cc9 159 Gene3D G3DSA:2.70.70.10 5 156 2.1E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_3201 26bac73b4b196748555bc06f92a33cc9 159 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 11 131 2.2E-44 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_3201 26bac73b4b196748555bc06f92a33cc9 159 SUPERFAMILY SSF51261 4 154 1.57E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_3201 26bac73b4b196748555bc06f92a33cc9 159 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 10 134 1.2E-49 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_3201 26bac73b4b196748555bc06f92a33cc9 159 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 73 85 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 Gene3D G3DSA:1.20.1260.30 1 161 1.0E-28 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 Pfam PF12161 HsdM N-terminal domain 6 130 1.1E-10 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 SUPERFAMILY SSF53335 5 485 3.04E-126 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 Gene3D G3DSA:3.40.50.150 162 469 5.7E-79 T 13-10-2018 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 Pfam PF02384 N-6 DNA Methylase 137 450 8.4E-69 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 269 275 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 197 4.1E-17 T 13-10-2018 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 266 278 4.1E-17 T 13-10-2018 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 159 175 4.1E-17 T 13-10-2018 CLM_0792 17f94ca9ba690db9feab9df22c4f5efc 494 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 296 320 4.1E-17 T 13-10-2018 CLM_1151 2af48568f740d5bfb045d1dcd65adbc9 143 Gene3D G3DSA:1.20.1260.10 15 141 8.1E-24 T 13-10-2018 IPR012347 Ferritin-like CLM_1151 2af48568f740d5bfb045d1dcd65adbc9 143 Pfam PF02915 Rubrerythrin 28 79 1.2E-7 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 CLM_1151 2af48568f740d5bfb045d1dcd65adbc9 143 Pfam PF02915 Rubrerythrin 85 142 2.1E-5 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 CLM_1151 2af48568f740d5bfb045d1dcd65adbc9 143 SUPERFAMILY SSF47240 18 142 3.63E-30 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_2514 9bef537a73c979efb6404874582c5492 144 Gene3D G3DSA:3.30.2220.30 20 133 3.2E-24 T 13-10-2018 IPR038559 Clostridium phage phiCD119, XkdN superfamily CLM_2514 9bef537a73c979efb6404874582c5492 144 Pfam PF08890 Phage XkdN-like tail assembly chaperone protein, TAC 20 143 2.8E-35 T 13-10-2018 IPR014986 Clostridium phage phiCD119, XkdN CLM_3062 415488901ef00415bb6eebcc30fffcfd 489 SUPERFAMILY SSF52266 398 487 3.3E-6 T 13-10-2018 CLM_3062 415488901ef00415bb6eebcc30fffcfd 489 SUPERFAMILY SSF48452 19 111 7.97E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3062 415488901ef00415bb6eebcc30fffcfd 489 Gene3D G3DSA:1.25.40.10 4 169 2.9E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_2445 b58cd6cde845c5f0e850af598a8fd17a 239 Pfam PF00005 ABC transporter 19 162 9.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2445 b58cd6cde845c5f0e850af598a8fd17a 239 Gene3D G3DSA:3.40.50.300 1 239 3.1E-70 T 13-10-2018 CLM_2445 b58cd6cde845c5f0e850af598a8fd17a 239 SMART SM00382 27 213 4.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2445 b58cd6cde845c5f0e850af598a8fd17a 239 SUPERFAMILY SSF52540 2 230 1.93E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 241 324 4.2E-27 T 13-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 4 319 3.1E-102 T 13-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 SUPERFAMILY SSF82649 241 325 2.56E-25 T 13-10-2018 CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 Gene3D G3DSA:3.30.390.50 240 325 9.5E-29 T 13-10-2018 CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 Gene3D G3DSA:3.30.930.10 1 239 3.8E-77 T 13-10-2018 CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 Pfam PF03099 Biotin/lipoate A/B protein ligase family 44 149 9.2E-13 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CLM_0820 afb952c4d09610414e80a7b6b54f4b75 325 SUPERFAMILY SSF55681 1 238 1.7E-72 T 13-10-2018 CLM_1599 69cca7bf768176d8c77127e68f1e2efa 187 Pfam PF13668 Ferritin-like domain 66 184 7.7E-6 T 13-10-2018 CLM_1599 69cca7bf768176d8c77127e68f1e2efa 187 SUPERFAMILY SSF47240 66 184 5.98E-17 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_1599 69cca7bf768176d8c77127e68f1e2efa 187 Gene3D G3DSA:1.20.1260.10 58 186 6.4E-9 T 13-10-2018 IPR012347 Ferritin-like CLM_2523 7bb6c94dd3fa13f5212e9ffb8838347b 350 Gene3D G3DSA:3.90.1690.10 150 282 9.6E-9 T 13-10-2018 CLM_2523 7bb6c94dd3fa13f5212e9ffb8838347b 350 Pfam PF03864 Phage major capsid protein E 15 348 4.6E-34 T 13-10-2018 IPR005564 Major capsid protein GpE CLM_1164 59d17f0938dea55cb08720493a44989c 465 Pfam PF01565 FAD binding domain 45 182 5.0E-43 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CLM_1164 59d17f0938dea55cb08720493a44989c 465 Gene3D G3DSA:3.30.43.10 1 97 2.1E-25 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CLM_1164 59d17f0938dea55cb08720493a44989c 465 Gene3D G3DSA:3.30.465.10 99 218 4.3E-45 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_1164 59d17f0938dea55cb08720493a44989c 465 Gene3D G3DSA:3.30.70.2740 341 423 1.0E-14 T 13-10-2018 CLM_1164 59d17f0938dea55cb08720493a44989c 465 SUPERFAMILY SSF55103 225 464 5.07E-59 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CLM_1164 59d17f0938dea55cb08720493a44989c 465 Gene3D G3DSA:1.10.45.10 424 464 2.1E-12 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CLM_1164 59d17f0938dea55cb08720493a44989c 465 Pfam PF02913 FAD linked oxidases, C-terminal domain 220 463 3.1E-66 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CLM_1164 59d17f0938dea55cb08720493a44989c 465 SUPERFAMILY SSF56176 10 220 6.07E-69 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_0940 2820d6502f828bf12cf26f6caee04b7d 259 Gene3D G3DSA:1.10.1760.20 1 185 1.9E-20 T 13-10-2018 CLM_0940 2820d6502f828bf12cf26f6caee04b7d 259 Pfam PF07155 ECF-type riboflavin transporter, S component 5 149 6.4E-11 T 13-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 CLM_3895 ae0d350a8b0bc4e09219e5dddfb29cf4 532 Gene3D G3DSA:3.30.70.2700 1 78 8.4E-16 T 13-10-2018 CLM_3895 ae0d350a8b0bc4e09219e5dddfb29cf4 532 Gene3D G3DSA:3.50.50.60 82 304 3.7E-82 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3895 ae0d350a8b0bc4e09219e5dddfb29cf4 532 Gene3D G3DSA:3.50.50.60 464 530 1.7E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3895 ae0d350a8b0bc4e09219e5dddfb29cf4 532 Pfam PF03486 HI0933-like protein 99 262 7.2E-7 T 13-10-2018 CLM_3895 ae0d350a8b0bc4e09219e5dddfb29cf4 532 SUPERFAMILY SSF51905 95 525 8.07E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_3895 ae0d350a8b0bc4e09219e5dddfb29cf4 532 PIRSF PIRSF038984 1 532 5.5E-242 T 13-10-2018 IPR028348 FAD dependent protein CLM_3720 9e6774d78a5d94f966c73d5686802810 264 SMART SM00893 22 216 3.2E-65 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_3720 9e6774d78a5d94f966c73d5686802810 264 Gene3D G3DSA:3.40.50.620 1 262 3.0E-97 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3720 9e6774d78a5d94f966c73d5686802810 264 SUPERFAMILY SSF52402 1 259 9.77E-82 T 13-10-2018 CLM_3720 9e6774d78a5d94f966c73d5686802810 264 Pfam PF01012 Electron transfer flavoprotein domain 23 211 4.7E-49 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_3720 9e6774d78a5d94f966c73d5686802810 264 PIRSF PIRSF000090 1 264 1.4E-93 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 Gene3D G3DSA:3.40.50.300 207 391 7.2E-69 T 13-10-2018 CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 SMART SM00962 212 403 1.1E-64 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 SUPERFAMILY SSF52540 211 403 4.25E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 299 4.1E-78 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 Pfam PF00448 SRP54-type protein, GTPase domain 213 402 1.1E-43 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 SMART SM00382 211 358 1.8E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3010 09a96c054bc298bba6a9e5c1c7a69c20 408 Gene3D G3DSA:1.20.120.1380 173 394 7.2E-69 T 13-10-2018 CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 Pfam PF13305 WHG domain 91 175 3.0E-11 T 13-10-2018 IPR025996 WHG domain CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 SUPERFAMILY SSF48498 82 191 3.78E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.7E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.7E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 61 2.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 SUPERFAMILY SSF46689 6 76 8.72E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2415 598b2d05e24563b9a9f9a304cef07158 197 Gene3D G3DSA:1.10.357.10 1 193 5.6E-37 T 13-10-2018 CLM_2962 e0d367322db6e5f8acaf3d770cda1796 148 Pfam PF04471 Restriction endonuclease 8 122 1.2E-19 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 CLM_2962 e0d367322db6e5f8acaf3d770cda1796 148 SUPERFAMILY SSF52980 12 121 8.58E-15 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CLM_2962 e0d367322db6e5f8acaf3d770cda1796 148 Gene3D G3DSA:3.40.1350.10 14 126 7.3E-7 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 Pfam PF13411 MerR HTH family regulatory protein 3 71 1.7E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 Gene3D G3DSA:1.10.1660.10 2 144 5.3E-45 T 13-10-2018 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 SMART SM00422 3 72 8.2E-29 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 6.9E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 6.9E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 6.9E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 SUPERFAMILY SSF89082 164 251 7.06E-29 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 Pfam PF07739 TipAS antibiotic-recognition domain 135 249 6.1E-39 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 SUPERFAMILY SSF46955 3 117 1.68E-28 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_1058 85e4a8e70f6a8fc32ea07fb0c6d58a2b 255 Gene3D G3DSA:1.10.490.50 164 253 6.9E-28 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CLM_0303 6c2a01a9bc60f3cb74452662ad713534 244 Gene3D G3DSA:3.60.15.10 1 240 2.2E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0303 6c2a01a9bc60f3cb74452662ad713534 244 SMART SM00849 21 219 3.3E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0303 6c2a01a9bc60f3cb74452662ad713534 244 SUPERFAMILY SSF56281 1 229 3.94E-29 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0303 6c2a01a9bc60f3cb74452662ad713534 244 Pfam PF00753 Metallo-beta-lactamase superfamily 24 185 3.6E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3877 34b73c2c76844c10dd3179a583737843 225 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 210 6.8E-52 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_3877 34b73c2c76844c10dd3179a583737843 225 SUPERFAMILY SSF51569 1 216 3.45E-68 T 13-10-2018 CLM_3877 34b73c2c76844c10dd3179a583737843 225 Gene3D G3DSA:3.20.20.70 1 221 4.2E-79 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3877 34b73c2c76844c10dd3179a583737843 225 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_3877 34b73c2c76844c10dd3179a583737843 225 ProSitePatterns PS00958 Transaldolase active site. 83 100 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 Pfam PF01008 Initiation factor 2 subunit family 48 337 1.5E-80 T 13-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 3 347 38.365 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 Gene3D G3DSA:3.40.50.10470 149 349 2.4E-66 T 13-10-2018 CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 Gene3D G3DSA:1.20.120.420 2 147 2.2E-45 T 13-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 SUPERFAMILY SSF100950 6 342 6.28E-119 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 6 336 7.5E-140 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 CLM_1427 ac3adc41422bb03a726c25ef1f2f224b 349 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 35 337 1.2E-115 T 13-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 395 1.0E-154 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 PIRSF PIRSF001434 1 399 1.0E-153 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 Gene3D G3DSA:3.90.1150.10 264 396 3.1E-59 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 SUPERFAMILY SSF53383 29 396 2.89E-126 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 7 396 1.3E-184 T 13-10-2018 IPR006237 L-methionine gamma-lyase GO:0018826 KEGG: 00270+4.4.1.11|KEGG: 00450+4.4.1.11|KEGG: 00920+4.4.1.2|MetaCyc: PWY-7793 CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 204 218 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_0033 646ad74befdf1245efb6f6069aa2179a 400 Gene3D G3DSA:3.40.640.10 7 263 2.8E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1818 64110a1f769c88a93a0484598065fa2a 175 Pfam PF04143 Sulphur transport 5 165 2.0E-35 T 13-10-2018 IPR007272 Sulphur transport domain CLM_1614 9488f39695692066c4e40be16668beb3 349 Gene3D G3DSA:1.10.443.10 163 348 1.5E-46 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_1614 9488f39695692066c4e40be16668beb3 349 Pfam PF14657 Arm DNA-binding domain 11 53 2.9E-12 T 13-10-2018 IPR028259 AP2-like integrase, N-terminal domain CLM_1614 9488f39695692066c4e40be16668beb3 349 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 58 114 4.7E-16 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CLM_1614 9488f39695692066c4e40be16668beb3 349 SUPERFAMILY SSF56349 57 342 1.09E-64 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_1614 9488f39695692066c4e40be16668beb3 349 Gene3D G3DSA:1.10.150.130 54 162 7.8E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CLM_1614 9488f39695692066c4e40be16668beb3 349 Pfam PF00589 Phage integrase family 166 334 5.7E-26 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_3111 77e43005fe04a77cd5ad7e641afa1112 131 Gene3D G3DSA:2.30.30.40 4 125 1.2E-36 T 13-10-2018 CLM_3111 77e43005fe04a77cd5ad7e641afa1112 131 Pfam PF01584 CheW-like domain 2 131 9.3E-31 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_3111 77e43005fe04a77cd5ad7e641afa1112 131 SUPERFAMILY SSF50341 1 131 1.44E-31 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CLM_3111 77e43005fe04a77cd5ad7e641afa1112 131 SMART SM00260 1 131 1.9E-19 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CLM_3111 77e43005fe04a77cd5ad7e641afa1112 131 Gene3D G3DSA:2.40.50.180 19 131 1.2E-36 T 13-10-2018 CLM_1066 8ec5fc9a0fc79e25b116c5a6a227fba2 227 Pfam PF02361 Cobalt transport protein 21 194 1.5E-15 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 SUPERFAMILY SSF54631 216 361 2.78E-32 T 13-10-2018 CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 SUPERFAMILY SSF56176 355 435 1.77E-21 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 Pfam PF00571 CBS domain 223 275 0.0071 T 13-10-2018 IPR000644 CBS domain CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 Pfam PF03471 Transporter associated domain 358 436 5.1E-23 T 13-10-2018 IPR005170 Transporter-associated domain CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 Gene3D G3DSA:3.10.580.10 200 353 4.7E-55 T 13-10-2018 CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 Gene3D G3DSA:3.30.465.10 355 437 6.9E-25 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 Pfam PF01595 Domain of unknown function DUF21 16 206 1.1E-48 T 13-10-2018 IPR002550 CNNM, transmembrane domain CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 SMART SM01091 357 437 5.3E-25 T 13-10-2018 IPR005170 Transporter-associated domain CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 SMART SM00116 294 342 24.0 T 13-10-2018 IPR000644 CBS domain CLM_3326 bfa109889d92cb8a9a5e21aec74a343b 439 SMART SM00116 230 279 0.68 T 13-10-2018 IPR000644 CBS domain CLM_2969 8e9004b64bb4c2b9ba1a5a25e5b86873 184 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 4 182 1.7E-52 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CLM_2969 8e9004b64bb4c2b9ba1a5a25e5b86873 184 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 4 182 6.2E-39 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CLM_2969 8e9004b64bb4c2b9ba1a5a25e5b86873 184 PIRSF PIRSF006806 1 183 1.2E-47 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CLM_2969 8e9004b64bb4c2b9ba1a5a25e5b86873 184 SUPERFAMILY SSF100950 3 182 3.77E-44 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_2969 8e9004b64bb4c2b9ba1a5a25e5b86873 184 Gene3D G3DSA:3.40.50.10420 1 184 2.2E-54 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CLM_2327 708a1ba50733b9bfc4c0a3d44689e210 497 Gene3D G3DSA:3.40.605.10 17 445 8.1E-159 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_2327 708a1ba50733b9bfc4c0a3d44689e210 497 Pfam PF00171 Aldehyde dehydrogenase family 12 273 1.5E-24 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CLM_2327 708a1ba50733b9bfc4c0a3d44689e210 497 SUPERFAMILY SSF53720 10 448 1.03E-70 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CLM_2327 708a1ba50733b9bfc4c0a3d44689e210 497 Gene3D G3DSA:3.40.309.10 223 407 8.1E-159 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CLM_2530 a9422229f50cb6c9542c7d20e6252465 235 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 8 48 1.1E-4 T 13-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 CLM_0993 0517e82296ce1099af5734e7172a628c 184 Pfam PF03358 NADPH-dependent FMN reductase 1 155 3.2E-27 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_0993 0517e82296ce1099af5734e7172a628c 184 Gene3D G3DSA:3.40.50.360 2 184 4.4E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0993 0517e82296ce1099af5734e7172a628c 184 SUPERFAMILY SSF52218 1 181 4.04E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0362 6cfa443b1a7fb6cced758cb6f156438c 256 Pfam PF00005 ABC transporter 18 167 6.1E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0362 6cfa443b1a7fb6cced758cb6f156438c 256 Gene3D G3DSA:3.40.50.300 2 252 4.1E-64 T 13-10-2018 CLM_0362 6cfa443b1a7fb6cced758cb6f156438c 256 SMART SM00382 27 212 1.6E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0362 6cfa443b1a7fb6cced758cb6f156438c 256 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0362 6cfa443b1a7fb6cced758cb6f156438c 256 SUPERFAMILY SSF52540 3 225 4.99E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 SMART SM01004 1 319 6.5E-233 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 3 318 3.0E-152 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 293 312 5.3E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 263 278 5.3E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 118 132 5.3E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 186 205 5.3E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 238 254 5.3E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 148 167 5.3E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 SUPERFAMILY SSF51569 2 321 4.83E-144 T 13-10-2018 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 238 250 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 PIRSF PIRSF001415 1 322 1.2E-150 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CLM_1071 bfe2f654fb99bae916c54a13494cf231 324 Gene3D G3DSA:3.20.20.70 1 320 6.4E-152 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2965 b7ed65d6c761d19e54848679172dc167 82 SUPERFAMILY SSF109709 30 79 8.63E-8 T 13-10-2018 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 SUPERFAMILY SSF63411 1 146 5.86E-62 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 148 35.514 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 Gene3D G3DSA:3.30.1360.80 1 149 3.9E-59 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 145 7.0E-49 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 PIRSF PIRSF006160 1 150 4.3E-65 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 3 146 5.4E-57 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 5.2E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 73 91 5.2E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 5.2E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 5.2E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0867 c9666de15b63c5e90f4dcd82f5dc3e23 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 114 133 5.2E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CLM_0957 9746bb6f81b14c5147ec390e155c932f 78 SUPERFAMILY SSF50037 8 76 1.95E-18 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CLM_0957 9746bb6f81b14c5147ec390e155c932f 78 SMART SM00899 5 77 1.1E-18 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_0957 9746bb6f81b14c5147ec390e155c932f 78 Gene3D G3DSA:2.30.30.90 1 78 2.8E-22 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain CLM_0957 9746bb6f81b14c5147ec390e155c932f 78 Pfam PF04023 FeoA domain 6 76 1.0E-14 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_3954 77f2500bda3e9d4a578441bad7200878 80 Gene3D G3DSA:3.30.1330.30 5 79 2.2E-19 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_3954 77f2500bda3e9d4a578441bad7200878 80 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 10 76 7.4E-13 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CLM_3954 77f2500bda3e9d4a578441bad7200878 80 SUPERFAMILY SSF55315 7 79 1.94E-17 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 Pfam PF01029 NusB family 3 126 7.5E-32 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 5 441 2.0E-122 T 13-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 SUPERFAMILY SSF48013 3 153 1.96E-34 T 13-10-2018 IPR035926 NusB-like superfamily CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 Pfam PF01189 16S rRNA methyltransferase RsmB/F 247 440 1.0E-58 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 256 266 2.3E-26 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 227 241 2.3E-26 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 323 335 2.3E-26 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 373 389 2.3E-26 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 424 441 2.3E-26 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 Gene3D G3DSA:3.40.50.150 144 441 5.0E-82 T 13-10-2018 CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 SUPERFAMILY SSF53335 139 442 5.47E-71 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2807 7d72464a3601e204d9bcd80d7d8f18d4 442 Gene3D G3DSA:1.10.940.10 1 142 3.2E-38 T 13-10-2018 IPR035926 NusB-like superfamily CLM_3937 a80b106f2828c498017a7d92438032bc 105 Pfam PF00467 KOW motif 8 39 2.9E-6 T 13-10-2018 IPR005824 KOW CLM_3937 a80b106f2828c498017a7d92438032bc 105 Gene3D G3DSA:2.30.30.30 1 104 2.1E-38 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CLM_3937 a80b106f2828c498017a7d92438032bc 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 41 104 3.1E-28 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3937 a80b106f2828c498017a7d92438032bc 105 SMART SM00739 5 32 4.5E-5 T 13-10-2018 IPR005824 KOW CLM_3937 a80b106f2828c498017a7d92438032bc 105 SUPERFAMILY SSF50104 2 103 6.47E-35 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CLM_3937 a80b106f2828c498017a7d92438032bc 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 4 99 19.506 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3937 a80b106f2828c498017a7d92438032bc 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 4 104 1.1E-37 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1099 36928ee847ae301f4336482a55e835f4 373 Gene3D G3DSA:3.40.50.11220 4 157 1.2E-35 T 13-10-2018 CLM_1099 36928ee847ae301f4336482a55e835f4 373 Gene3D G3DSA:3.30.420.180 246 373 8.8E-27 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 CLM_1099 36928ee847ae301f4336482a55e835f4 373 Pfam PF01890 Cobalamin synthesis G C-terminus 255 370 3.6E-28 T 13-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 CLM_1099 36928ee847ae301f4336482a55e835f4 373 SUPERFAMILY SSF159664 248 372 3.27E-32 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 CLM_1099 36928ee847ae301f4336482a55e835f4 373 Pfam PF11761 Cobalamin biosynthesis central region 168 230 3.0E-6 T 13-10-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 CLM_1099 36928ee847ae301f4336482a55e835f4 373 Pfam PF11760 Cobalamin synthesis G N-terminal 82 162 2.1E-37 T 13-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 CLM_1099 36928ee847ae301f4336482a55e835f4 373 SUPERFAMILY SSF159672 8 262 8.37E-58 T 13-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 CLM_3066 cc7362c5147a3e61f5a5f1799a3c9334 368 SUPERFAMILY SSF53335 3 93 9.63E-5 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3066 cc7362c5147a3e61f5a5f1799a3c9334 368 Gene3D G3DSA:3.40.50.1110 228 368 2.1E-7 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CLM_3066 cc7362c5147a3e61f5a5f1799a3c9334 368 Gene3D G3DSA:3.40.50.12290 1 95 1.0E-7 T 13-10-2018 CLM_3066 cc7362c5147a3e61f5a5f1799a3c9334 368 SUPERFAMILY SSF52266 252 366 4.21E-7 T 13-10-2018 CLM_1773 6561a0792ee40af0a05562cc96404732 289 Gene3D G3DSA:1.20.1510.10 11 208 8.0E-55 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CLM_1773 6561a0792ee40af0a05562cc96404732 289 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 288 3.6E-67 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CLM_1773 6561a0792ee40af0a05562cc96404732 289 Gene3D G3DSA:3.30.70.1350 210 289 2.9E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CLM_1773 6561a0792ee40af0a05562cc96404732 289 SUPERFAMILY SSF161111 10 209 2.09E-51 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CLM_1773 6561a0792ee40af0a05562cc96404732 289 Pfam PF01545 Cation efflux family 16 207 9.3E-46 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CLM_1773 6561a0792ee40af0a05562cc96404732 289 SUPERFAMILY SSF160240 211 287 1.96E-18 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CLM_1773 6561a0792ee40af0a05562cc96404732 289 Pfam PF16916 Dimerisation domain of Zinc Transporter 214 288 1.1E-19 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain CLM_1588 55506ab6b261a23bf9b9a0b06b99ee71 268 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 69 82 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CLM_1588 55506ab6b261a23bf9b9a0b06b99ee71 268 SUPERFAMILY SSF53850 5 264 4.4E-60 T 13-10-2018 CLM_1588 55506ab6b261a23bf9b9a0b06b99ee71 268 Gene3D G3DSA:3.40.190.10 130 229 4.0E-62 T 13-10-2018 CLM_1588 55506ab6b261a23bf9b9a0b06b99ee71 268 SMART SM00062 45 267 5.3E-53 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_1588 55506ab6b261a23bf9b9a0b06b99ee71 268 Gene3D G3DSA:3.40.190.10 43 263 4.0E-62 T 13-10-2018 CLM_1588 55506ab6b261a23bf9b9a0b06b99ee71 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 264 8.3E-55 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLM_2038 a779017996a7d2aade54a81b7439ae9c 74 Pfam PF10960 BhlA holin family 1 69 9.7E-23 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_2038 a779017996a7d2aade54a81b7439ae9c 74 ProDom PD019268 UVIB BACTERIOCIN BHLA PLASMID ANTIBIOTIC HOLIN-LIKE PRECURSOR ANTIMICROBIAL SIGNAL PROPHAGE-DERIVED 1 58 6.0E-13 T 13-10-2018 IPR024405 Prophage protein BhlA/UviB CLM_2222 852b222b0a31a7976063979d3709532b 181 Pfam PF00156 Phosphoribosyl transferase domain 51 159 4.2E-12 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_2222 852b222b0a31a7976063979d3709532b 181 SUPERFAMILY SSF53271 14 167 4.47E-21 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_2222 852b222b0a31a7976063979d3709532b 181 Gene3D G3DSA:3.40.50.2020 2 178 9.4E-46 T 13-10-2018 CLM_1793 240869e5843d25f34d5883b767c1a805 331 Gene3D G3DSA:3.40.50.11900 208 330 3.7E-10 T 13-10-2018 CLM_1793 240869e5843d25f34d5883b767c1a805 331 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 9 325 1.4E-32 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2314 db4294df53e3e04adf83b183ac0c3fba 96 Gene3D G3DSA:3.30.70.1710 1 96 1.6E-40 T 13-10-2018 CLM_2314 db4294df53e3e04adf83b183ac0c3fba 96 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 22 41 - T 13-10-2018 IPR020808 Bacterial microcompartments protein, conserved site CLM_2314 db4294df53e3e04adf83b183ac0c3fba 96 SUPERFAMILY SSF143414 3 91 4.32E-32 T 13-10-2018 IPR037233 CcmK-like superfamily CLM_2314 db4294df53e3e04adf83b183ac0c3fba 96 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 48 3.0E-17 T 13-10-2018 CLM_2314 db4294df53e3e04adf83b183ac0c3fba 96 Pfam PF00936 BMC domain 5 80 8.5E-28 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2314 db4294df53e3e04adf83b183ac0c3fba 96 SMART SM00877 4 80 1.3E-35 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_0630 71ff163b590e27db810a2eaf94c32824 449 PIRSF PIRSF006060 1 449 1.1E-73 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0630 71ff163b590e27db810a2eaf94c32824 449 Pfam PF13520 Amino acid permease 11 410 2.1E-58 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0630 71ff163b590e27db810a2eaf94c32824 449 Gene3D G3DSA:1.20.1740.10 5 448 4.0E-97 T 13-10-2018 CLM_2819 1ff69a56f0ead6821ab2d841cdd1332f 493 SUPERFAMILY SSF52540 18 252 2.43E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2819 1ff69a56f0ead6821ab2d841cdd1332f 493 PIRSF PIRSF007466 1 493 1.7E-238 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 CLM_2819 1ff69a56f0ead6821ab2d841cdd1332f 493 TIGRFAM TIGR02836 spore_IV_A: stage IV sporulation protein A 1 493 8.2E-260 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 CLM_2819 1ff69a56f0ead6821ab2d841cdd1332f 493 Pfam PF09547 Stage IV sporulation protein A (spore_IV_A) 2 493 1.8E-230 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 CLM_2819 1ff69a56f0ead6821ab2d841cdd1332f 493 Gene3D G3DSA:3.40.50.300 10 244 3.3E-10 T 13-10-2018 CLM_2287 b576cb551e3742136b1cdaadc41ccffe 45 Gene3D G3DSA:3.40.50.1390 1 44 1.7E-7 T 13-10-2018 CLM_0860 def9939531cb3089ae0f2175615c9945 517 ProSitePatterns PS00211 ABC transporters family signature. 440 454 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0860 def9939531cb3089ae0f2175615c9945 517 SUPERFAMILY SSF52540 306 511 9.16E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0860 def9939531cb3089ae0f2175615c9945 517 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0860 def9939531cb3089ae0f2175615c9945 517 Pfam PF00005 ABC transporter 20 190 2.9E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0860 def9939531cb3089ae0f2175615c9945 517 SMART SM00382 28 237 2.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0860 def9939531cb3089ae0f2175615c9945 517 SMART SM00382 348 513 1.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0860 def9939531cb3089ae0f2175615c9945 517 Pfam PF00005 ABC transporter 340 468 8.7E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0860 def9939531cb3089ae0f2175615c9945 517 Gene3D G3DSA:3.40.50.300 3 287 1.0E-59 T 13-10-2018 CLM_0860 def9939531cb3089ae0f2175615c9945 517 Pfam PF12848 ABC transporter 229 314 1.1E-23 T 13-10-2018 IPR032781 ABC-transporter extension domain CLM_0860 def9939531cb3089ae0f2175615c9945 517 Gene3D G3DSA:3.40.50.300 297 515 6.5E-41 T 13-10-2018 CLM_0860 def9939531cb3089ae0f2175615c9945 517 SUPERFAMILY SSF52540 3 248 1.93E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3133 912c7b77a0f482fb0fc6a82d715999f0 405 SUPERFAMILY SSF63411 225 401 2.33E-23 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_3133 912c7b77a0f482fb0fc6a82d715999f0 405 Pfam PF00675 Insulinase (Peptidase family M16) 12 153 3.0E-22 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CLM_3133 912c7b77a0f482fb0fc6a82d715999f0 405 Gene3D G3DSA:3.30.830.10 3 213 1.5E-50 T 13-10-2018 CLM_3133 912c7b77a0f482fb0fc6a82d715999f0 405 Pfam PF05193 Peptidase M16 inactive domain 164 339 8.5E-29 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CLM_3133 912c7b77a0f482fb0fc6a82d715999f0 405 Gene3D G3DSA:3.30.830.10 219 404 1.1E-22 T 13-10-2018 CLM_3133 912c7b77a0f482fb0fc6a82d715999f0 405 SUPERFAMILY SSF63411 3 213 2.0E-48 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 Gene3D G3DSA:3.40.190.10 260 521 2.0E-100 T 13-10-2018 CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 SUPERFAMILY SSF53850 257 525 9.23E-70 T 13-10-2018 CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 Gene3D G3DSA:3.40.190.120 362 465 2.0E-100 T 13-10-2018 CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 257 522 1.3E-65 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 195 8.0E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 Gene3D G3DSA:1.10.3720.10 11 205 4.0E-33 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1878 7462c0837cc00dfcaebd36ea3377c674 527 SUPERFAMILY SSF161098 13 199 2.62E-39 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3140 6866bad191a6228dd275977513e63892 390 Gene3D G3DSA:1.20.1530.20 2 389 4.8E-45 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_3140 6866bad191a6228dd275977513e63892 390 Pfam PF00999 Sodium/hydrogen exchanger family 8 380 1.7E-40 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CLM_3030 180f27bf3c51539ac8c015543213677e 144 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 144 1.8E-50 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 CLM_3030 180f27bf3c51539ac8c015543213677e 144 Pfam PF00460 Flagella basal body rod protein 8 35 2.9E-8 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CLM_3030 180f27bf3c51539ac8c015543213677e 144 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 94 141 3.6E-11 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLM_0986 9bea5f4406d02251f0f15b30546a2615 384 SMART SM00530 12 67 1.6E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0986 9bea5f4406d02251f0f15b30546a2615 384 Gene3D G3DSA:1.10.260.40 4 71 2.6E-23 T 13-10-2018 CLM_0986 9bea5f4406d02251f0f15b30546a2615 384 Pfam PF01381 Helix-turn-helix 16 67 2.0E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0986 9bea5f4406d02251f0f15b30546a2615 384 SUPERFAMILY SSF47413 7 72 4.61E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1030 cd41c0c24d9e49856b33f57a9fd9e95f 410 Gene3D G3DSA:3.75.10.10 1 410 1.8E-88 T 13-10-2018 CLM_1030 cd41c0c24d9e49856b33f57a9fd9e95f 410 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 7 407 7.3E-65 T 13-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 CLM_1030 cd41c0c24d9e49856b33f57a9fd9e95f 410 SUPERFAMILY SSF55909 4 407 7.85E-73 T 13-10-2018 CLM_3497 97d9e9168f9f01438a9834d09eaef62c 324 TIGRFAM TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase 96 321 1.3E-102 T 13-10-2018 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA CLM_3497 97d9e9168f9f01438a9834d09eaef62c 324 Pfam PF01522 Polysaccharide deacetylase 128 252 5.2E-26 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_3497 97d9e9168f9f01438a9834d09eaef62c 324 Gene3D G3DSA:3.20.20.370 77 324 1.7E-74 T 13-10-2018 CLM_3497 97d9e9168f9f01438a9834d09eaef62c 324 SUPERFAMILY SSF88713 121 321 2.25E-58 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_1468 81023fce3ec2d6d67340ee741d02e195 118 Gene3D G3DSA:3.30.420.130 1 106 7.5E-28 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily CLM_1468 81023fce3ec2d6d67340ee741d02e195 118 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 98 1.2E-22 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CLM_1468 81023fce3ec2d6d67340ee741d02e195 118 SUPERFAMILY SSF53146 1 118 3.14E-32 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily CLM_0159 469aa7d78758062f243872eba655cd74 78 Gene3D G3DSA:2.30.30.100 1 77 4.6E-24 T 13-10-2018 CLM_0159 469aa7d78758062f243872eba655cd74 78 PIRSF PIRSF037257 1 78 4.1E-32 T 13-10-2018 IPR009366 Protein Veg GO:0006355 CLM_0159 469aa7d78758062f243872eba655cd74 78 Pfam PF06257 Biofilm formation stimulator VEG 6 74 2.5E-29 T 13-10-2018 IPR009366 Protein Veg GO:0006355 CLM_3084 0c3ebe6cca060ef285bf7ec1b69d00d3 285 Pfam PF00483 Nucleotidyl transferase 2 238 3.7E-65 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CLM_3084 0c3ebe6cca060ef285bf7ec1b69d00d3 285 Gene3D G3DSA:3.90.550.10 1 285 3.2E-81 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3084 0c3ebe6cca060ef285bf7ec1b69d00d3 285 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 284 7.9E-144 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CLM_3084 0c3ebe6cca060ef285bf7ec1b69d00d3 285 SUPERFAMILY SSF53448 1 284 1.34E-87 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_0187 23e24c2de7391d2fa40c49089f7fc7c5 145 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 145 1.2E-61 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CLM_0187 23e24c2de7391d2fa40c49089f7fc7c5 145 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 143 4.4E-61 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 CLM_0187 23e24c2de7391d2fa40c49089f7fc7c5 145 Gene3D G3DSA:3.40.1400.10 1 145 3.4E-63 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CLM_0187 23e24c2de7391d2fa40c49089f7fc7c5 145 SUPERFAMILY SSF89623 1 144 1.31E-62 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CLM_0187 23e24c2de7391d2fa40c49089f7fc7c5 145 PIRSF PIRSF005384 1 145 6.2E-62 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CLM_0187 23e24c2de7391d2fa40c49089f7fc7c5 145 Pfam PF02502 Ribose/Galactose Isomerase 3 140 3.4E-62 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 Gene3D G3DSA:1.10.10.10 221 313 1.1E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 20 106 6.5E-28 T 13-10-2018 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 Pfam PF14527 WhiA LAGLIDADG-like domain 131 222 2.9E-38 T 13-10-2018 IPR039518 WhiA, LAGLIDADG-like domain CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 Gene3D G3DSA:3.10.28.10 1 220 7.4E-63 T 13-10-2018 IPR027434 Homing endonuclease CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 311 35.014 T 13-10-2018 IPR003802 Sporulation regulator WhiA GO:0043937 CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 5 309 4.8E-113 T 13-10-2018 IPR033981 Sporulation regulator WhiA-like CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 Pfam PF02650 WhiA C-terminal HTH domain 225 308 8.3E-37 T 13-10-2018 IPR023054 Sporulation regulator WhiA, C-terminal CLM_3837 c34bf99c32573aab8d9205ac2ca97f01 315 SUPERFAMILY SSF55608 119 226 4.86E-21 T 13-10-2018 IPR027434 Homing endonuclease CLM_2867 0db2635382de31042b5f1115039e5f37 150 Gene3D G3DSA:3.30.1490.190 96 150 1.5E-21 T 13-10-2018 CLM_2867 0db2635382de31042b5f1115039e5f37 150 Pfam PF01475 Ferric uptake regulator family 19 141 3.5E-40 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CLM_2867 0db2635382de31042b5f1115039e5f37 150 Gene3D G3DSA:1.10.10.10 3 92 1.2E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2867 0db2635382de31042b5f1115039e5f37 150 SUPERFAMILY SSF46785 10 145 9.49E-43 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3422 58bf3766442495e5a44935ba3576c240 335 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 61 219 2.9E-14 T 13-10-2018 CLM_3422 58bf3766442495e5a44935ba3576c240 335 SMART SM00282 76 218 7.9E-4 T 13-10-2018 IPR001791 Laminin G domain CLM_3422 58bf3766442495e5a44935ba3576c240 335 SUPERFAMILY SSF49899 13 219 1.14E-22 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_3422 58bf3766442495e5a44935ba3576c240 335 Gene3D G3DSA:2.60.120.200 12 228 7.1E-24 T 13-10-2018 CLM_1289 0f7344fed5190574bfbc7966d1919dee 166 SUPERFAMILY SSF50475 8 164 2.7E-18 T 13-10-2018 CLM_1289 0f7344fed5190574bfbc7966d1919dee 166 Gene3D G3DSA:2.30.110.10 16 165 2.1E-27 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_1289 0f7344fed5190574bfbc7966d1919dee 166 Pfam PF01613 Flavin reductase like domain 32 163 7.3E-5 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CLM_1897 a253e6dafc80a5fe0a8ef4edf07383ba 95 Pfam PF02954 Bacterial regulatory protein, Fis family 68 95 1.3E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CLM_1897 a253e6dafc80a5fe0a8ef4edf07383ba 95 Gene3D G3DSA:1.10.10.60 61 95 5.7E-7 T 13-10-2018 CLM_1897 a253e6dafc80a5fe0a8ef4edf07383ba 95 Gene3D G3DSA:1.10.8.60 5 50 2.1E-9 T 13-10-2018 CLM_1897 a253e6dafc80a5fe0a8ef4edf07383ba 95 SUPERFAMILY SSF46689 16 94 8.36E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_4094 4b0ca80675c6b557c2669cd302299b35 308 Gene3D G3DSA:3.20.20.70 3 307 2.5E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4094 4b0ca80675c6b557c2669cd302299b35 308 Pfam PF03060 Nitronate monooxygenase 5 299 6.3E-77 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 CLM_4094 4b0ca80675c6b557c2669cd302299b35 308 SUPERFAMILY SSF51412 8 304 5.04E-80 T 13-10-2018 CLM_4094 4b0ca80675c6b557c2669cd302299b35 308 TIGRFAM TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II 6 302 1.5E-154 T 13-10-2018 IPR017569 Enoyl-(acyl-carrier-protein) reductase II, putative CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 SUPERFAMILY SSF52540 5 247 1.77E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 Gene3D G3DSA:2.40.50.140 288 328 3.9E-11 T 13-10-2018 CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 38 359 1.4E-122 T 13-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 SUPERFAMILY SSF50331 240 359 4.99E-11 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 SMART SM00382 32 215 6.7E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 Pfam PF08402 TOBE domain 281 359 2.5E-8 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 Gene3D G3DSA:3.40.50.300 5 225 1.3E-67 T 13-10-2018 CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 Gene3D G3DSA:2.40.50.940 226 287 3.9E-11 T 13-10-2018 CLM_0665 e7502bb53739fbdf1cb4deb30e0dfacc 360 Pfam PF00005 ABC transporter 24 165 9.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3392 0183302d0c929e435c1fb4023f18b68d 87 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 16.468 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CLM_3392 0183302d0c929e435c1fb4023f18b68d 87 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 2.1E-25 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CLM_3392 0183302d0c929e435c1fb4023f18b68d 87 Pfam PF03776 Septum formation topological specificity factor MinE 12 82 2.1E-24 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CLM_3392 0183302d0c929e435c1fb4023f18b68d 87 Gene3D G3DSA:3.30.1070.10 1 76 3.6E-19 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 CLM_3392 0183302d0c929e435c1fb4023f18b68d 87 SUPERFAMILY SSF55229 28 85 1.02E-11 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 CLM_2816 5024e006b41ba1a484637507748adb84 292 Pfam PF03755 YicC-like family, N-terminal region 2 156 9.2E-45 T 13-10-2018 IPR013527 YicC-like, N-terminal CLM_2816 5024e006b41ba1a484637507748adb84 292 Pfam PF08340 Domain of unknown function (DUF1732) 209 292 7.3E-36 T 13-10-2018 IPR013551 Domain of unknown function DUF1732 CLM_2816 5024e006b41ba1a484637507748adb84 292 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 292 3.9E-80 T 13-10-2018 IPR005229 Conserved hypothetical protein CHP00255 CLM_3284 b23a2e7de9153617f301f2e2d3c64884 403 SUPERFAMILY SSF53686 22 397 1.83E-58 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_3284 b23a2e7de9153617f301f2e2d3c64884 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 42 380 1.5E-49 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_3284 b23a2e7de9153617f301f2e2d3c64884 403 TIGRFAM TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family 24 398 1.7E-185 T 13-10-2018 IPR010081 Diaminopropionate ammonia-lyase GO:0008838|GO:0030170 CLM_3284 b23a2e7de9153617f301f2e2d3c64884 403 TIGRFAM TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase 4 399 9.0E-218 T 13-10-2018 IPR019871 Diaminopropionate ammonia-lyase, subgroup GO:0008838 CLM_3284 b23a2e7de9153617f301f2e2d3c64884 403 Gene3D G3DSA:3.40.50.1100 76 198 1.3E-148 T 13-10-2018 CLM_3284 b23a2e7de9153617f301f2e2d3c64884 403 Gene3D G3DSA:3.40.50.1100 33 396 1.3E-148 T 13-10-2018 CLM_2992 b4d03917ba580a8481f8171466784f8b 199 Hamap MF_00311 V-type proton ATPase subunit E [atpE]. 2 199 13.892 T 13-10-2018 IPR002842 V-type ATPase subunit E GO:0015991|GO:0033178|GO:0046961 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2992 b4d03917ba580a8481f8171466784f8b 199 Pfam PF01991 ATP synthase (E/31 kDa) subunit 11 198 1.0E-19 T 13-10-2018 IPR002842 V-type ATPase subunit E GO:0015991|GO:0033178|GO:0046961 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2992 b4d03917ba580a8481f8171466784f8b 199 SUPERFAMILY SSF160527 81 198 4.97E-20 T 13-10-2018 CLM_2992 b4d03917ba580a8481f8171466784f8b 199 Gene3D G3DSA:1.20.5.620 20 98 1.6E-19 T 13-10-2018 CLM_1718 2180a2b263d621b879631e1852ddb940 253 SUPERFAMILY SSF56219 1 253 4.06E-84 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_1718 2180a2b263d621b879631e1852ddb940 253 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 253 9.2E-101 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CLM_1718 2180a2b263d621b879631e1852ddb940 253 Gene3D G3DSA:3.60.10.10 1 253 1.3E-98 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_1718 2180a2b263d621b879631e1852ddb940 253 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 252 8.5E-97 T 13-10-2018 CLM_1718 2180a2b263d621b879631e1852ddb940 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 245 6.0E-21 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CLM_1718 2180a2b263d621b879631e1852ddb940 253 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 CLM_1352 d92bee7053694d156cdad9833edb8a1b 458 Gene3D G3DSA:1.20.1250.20 241 448 1.6E-11 T 13-10-2018 CLM_1352 d92bee7053694d156cdad9833edb8a1b 458 Pfam PF13347 MFS/sugar transport protein 24 444 6.1E-102 T 13-10-2018 CLM_1352 d92bee7053694d156cdad9833edb8a1b 458 Gene3D G3DSA:1.20.1250.20 14 223 2.9E-12 T 13-10-2018 CLM_1352 d92bee7053694d156cdad9833edb8a1b 458 SUPERFAMILY SSF103473 23 427 1.31E-35 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1352 d92bee7053694d156cdad9833edb8a1b 458 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 22 456 1.4E-115 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 SMART SM00448 4 114 8.6E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 Gene3D G3DSA:3.40.50.2300 1 132 1.0E-39 T 13-10-2018 CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 8.0E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 SUPERFAMILY SSF52172 4 126 9.25E-43 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 SUPERFAMILY SSF46894 129 230 2.27E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 SMART SM00862 154 230 9.1E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 Gene3D G3DSA:1.10.10.10 133 232 1.4E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0433 8568340c01d4e12d6757ee9541634b4a 232 Pfam PF00072 Response regulator receiver domain 6 114 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2664 376d2c0668a073b85789a45ad2cb3ae8 189 Gene3D G3DSA:1.10.10.1400 1 66 7.4E-16 T 13-10-2018 IPR038713 Terminase small subunit, N-terminal domain superfamily CLM_2664 376d2c0668a073b85789a45ad2cb3ae8 189 Pfam PF03592 Terminase small subunit 3 171 1.3E-35 T 13-10-2018 IPR005335 Terminase small subunit GO:0006323 CLM_1954 fea175a13a73b9ddb66d287211f1e01a 85 Gene3D G3DSA:2.30.30.100 2 71 5.3E-31 T 13-10-2018 CLM_1954 fea175a13a73b9ddb66d287211f1e01a 85 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 66 4.9E-32 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CLM_1954 fea175a13a73b9ddb66d287211f1e01a 85 Pfam PF17209 Hfq protein 8 69 7.2E-33 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CLM_1954 fea175a13a73b9ddb66d287211f1e01a 85 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 66 30.053 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CLM_1954 fea175a13a73b9ddb66d287211f1e01a 85 SUPERFAMILY SSF50182 7 65 4.78E-24 T 13-10-2018 IPR010920 LSM domain superfamily CLM_1268 af3db84d8c176cd568a5d6b14bb6c666 339 Gene3D G3DSA:3.40.50.300 1 237 7.3E-76 T 13-10-2018 CLM_1268 af3db84d8c176cd568a5d6b14bb6c666 339 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1268 af3db84d8c176cd568a5d6b14bb6c666 339 SUPERFAMILY SSF52540 4 243 8.83E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1268 af3db84d8c176cd568a5d6b14bb6c666 339 SUPERFAMILY SSF50331 237 338 3.34E-13 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CLM_1268 af3db84d8c176cd568a5d6b14bb6c666 339 SMART SM00382 28 211 1.3E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1268 af3db84d8c176cd568a5d6b14bb6c666 339 Pfam PF00005 ABC transporter 19 161 8.0E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2214 ae5954dde1dd0bc61433cce664616989 289 Gene3D G3DSA:3.20.20.70 14 273 9.8E-19 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2214 ae5954dde1dd0bc61433cce664616989 289 SMART SM00729 15 233 5.9E-35 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_2214 ae5954dde1dd0bc61433cce664616989 289 SUPERFAMILY SSF102114 4 238 1.44E-36 T 13-10-2018 CLM_2214 ae5954dde1dd0bc61433cce664616989 289 Pfam PF04055 Radical SAM superfamily 21 174 3.2E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3057 0530d728668c56a692f2ad71ceb4d9c2 55 SUPERFAMILY SSF140500 4 52 1.15E-7 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_3057 0530d728668c56a692f2ad71ceb4d9c2 55 Pfam PF09388 Spo0E like sporulation regulatory protein 7 51 1.3E-9 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 CLM_3857 88ce5bd513b70d8ff250dcd260b5d49e 274 SUPERFAMILY SSF52518 3 266 4.02E-96 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_3857 88ce5bd513b70d8ff250dcd260b5d49e 274 Gene3D G3DSA:3.40.50.970 1 274 6.7E-117 T 13-10-2018 CLM_3857 88ce5bd513b70d8ff250dcd260b5d49e 274 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 10 267 1.0E-64 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_3857 88ce5bd513b70d8ff250dcd260b5d49e 274 ProSitePatterns PS00801 Transketolase signature 1. 16 36 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CLM_3625 66fdeffb7bed68d665d3713bdfe320e7 181 Pfam PF02915 Rubrerythrin 62 175 1.6E-14 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 CLM_3625 66fdeffb7bed68d665d3713bdfe320e7 181 SUPERFAMILY SSF47240 55 180 9.14E-33 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_3625 66fdeffb7bed68d665d3713bdfe320e7 181 Gene3D G3DSA:2.20.28.10 1 35 2.4E-13 T 13-10-2018 CLM_3625 66fdeffb7bed68d665d3713bdfe320e7 181 Gene3D G3DSA:1.20.1260.10 55 179 4.1E-24 T 13-10-2018 IPR012347 Ferritin-like CLM_3625 66fdeffb7bed68d665d3713bdfe320e7 181 SUPERFAMILY SSF57802 1 48 7.74E-12 T 13-10-2018 CLM_3230 9c1fe423aa79e2c254df1ab9dd0f4736 86 Gene3D G3DSA:1.10.150.20 1 86 1.1E-31 T 13-10-2018 CLM_3230 9c1fe423aa79e2c254df1ab9dd0f4736 86 Pfam PF04994 TfoX C-terminal domain 3 78 7.1E-24 T 13-10-2018 IPR007077 TfoX, C-terminal CLM_2241 83475d897ba62f27ff83ba7ea2e02cb8 82 Gene3D G3DSA:3.40.50.300 2 81 3.0E-14 T 13-10-2018 CLM_2241 83475d897ba62f27ff83ba7ea2e02cb8 82 Pfam PF13087 AAA domain 4 61 2.1E-8 T 13-10-2018 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 SUPERFAMILY SSF47928 2 105 1.83E-22 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 Gene3D G3DSA:1.10.520.20 5 96 1.4E-12 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 PRINTS PR00125 ATP synthase delta subunit signature 5 24 2.9E-23 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 PRINTS PR00125 ATP synthase delta subunit signature 150 168 2.9E-23 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 PRINTS PR00125 ATP synthase delta subunit signature 74 85 2.9E-23 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 PRINTS PR00125 ATP synthase delta subunit signature 85 99 2.9E-23 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 PRINTS PR00125 ATP synthase delta subunit signature 135 150 2.9E-23 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 173 4.7E-39 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 174 1.0E-46 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 1 177 19.417 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_0197 74928cb04eb1b4ef1a22248146a8ccbc 179 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CLM_2424 2d65d2efc12d70007ea96b69a9b59f46 113 Gene3D G3DSA:3.30.2320.80 1 112 1.4E-27 T 13-10-2018 CLM_2424 2d65d2efc12d70007ea96b69a9b59f46 113 PIRSF PIRSF004761 1 113 3.8E-27 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_2424 2d65d2efc12d70007ea96b69a9b59f46 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 18.095 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_2424 2d65d2efc12d70007ea96b69a9b59f46 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 111 1.8E-26 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_2424 2d65d2efc12d70007ea96b69a9b59f46 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 111 1.2E-26 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 SUPERFAMILY SSF52540 159 414 2.66E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 SUPERFAMILY SSF52540 212 745 3.64E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 Gene3D G3DSA:3.40.50.300 569 779 3.2E-59 T 13-10-2018 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 SMART SM00488 190 437 4.0E-6 T 13-10-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 Pfam PF12705 PD-(D/E)XK nuclease superfamily 65 154 1.7E-5 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 Gene3D G3DSA:1.10.275.30 399 515 1.0E-55 T 13-10-2018 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 Pfam PF06733 DEAD_2 286 406 2.5E-13 T 13-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 Pfam PF13307 Helicase C-terminal domain 600 765 2.1E-41 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 Gene3D G3DSA:3.40.50.300 200 553 1.0E-55 T 13-10-2018 CLM_0603 03063473c3c36a0e3f28aa46b2453d17 784 SMART SM00491 616 752 6.6E-12 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CLM_0384 33bd094a8764ba4e88cae82dee94cecb 433 TIGRFAM TIGR03173 pbuX: xanthine permease 26 430 8.8E-148 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 CLM_0384 33bd094a8764ba4e88cae82dee94cecb 433 Pfam PF00860 Permease family 23 398 9.7E-96 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_0384 33bd094a8764ba4e88cae82dee94cecb 433 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 19 428 1.9E-120 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CLM_0384 33bd094a8764ba4e88cae82dee94cecb 433 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 346 366 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CLM_0063 4421c5b4c3aa25459bf380519456d141 187 Gene3D G3DSA:1.10.1740.10 4 90 5.0E-14 T 13-10-2018 CLM_0063 4421c5b4c3aa25459bf380519456d141 187 Pfam PF08281 Sigma-70, region 4 123 175 2.5E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_0063 4421c5b4c3aa25459bf380519456d141 187 SUPERFAMILY SSF88946 5 105 1.39E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0063 4421c5b4c3aa25459bf380519456d141 187 Gene3D G3DSA:1.10.10.10 109 180 4.8E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0063 4421c5b4c3aa25459bf380519456d141 187 Pfam PF04542 Sigma-70 region 2 24 91 3.7E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0063 4421c5b4c3aa25459bf380519456d141 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 179 4.7E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_0063 4421c5b4c3aa25459bf380519456d141 187 SUPERFAMILY SSF88659 112 179 6.35E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3912 72430746191d520c980cdb1c230468e8 130 Gene3D G3DSA:3.30.230.10 1 130 3.6E-53 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_3912 72430746191d520c980cdb1c230468e8 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.2E-48 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 CLM_3912 72430746191d520c980cdb1c230468e8 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 CLM_3912 72430746191d520c980cdb1c230468e8 130 SUPERFAMILY SSF54211 6 130 4.55E-50 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_3912 72430746191d520c980cdb1c230468e8 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 34.716 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid CLM_3227 e14b06a41c6e5e5b1c952e700d4df343 405 Pfam PF00999 Sodium/hydrogen exchanger family 12 386 2.8E-70 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CLM_3227 e14b06a41c6e5e5b1c952e700d4df343 405 Gene3D G3DSA:1.20.1530.20 3 396 3.7E-97 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_1173 08bb105fd85a935e92e1c8032f6d2763 232 Gene3D G3DSA:3.50.40.10 65 203 3.3E-8 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 CLM_1173 08bb105fd85a935e92e1c8032f6d2763 232 Pfam PF03483 B3/4 domain 64 194 4.7E-26 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CLM_1173 08bb105fd85a935e92e1c8032f6d2763 232 SUPERFAMILY SSF56037 50 227 7.85E-31 T 13-10-2018 CLM_1173 08bb105fd85a935e92e1c8032f6d2763 232 SMART SM00873 61 215 1.5E-16 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CLM_0048 3a35209ff834fc6ab78396c87bf520b0 369 Gene3D G3DSA:1.20.1250.20 179 366 7.2E-32 T 13-10-2018 CLM_0048 3a35209ff834fc6ab78396c87bf520b0 369 Pfam PF07690 Major Facilitator Superfamily 10 305 3.1E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_0048 3a35209ff834fc6ab78396c87bf520b0 369 Gene3D G3DSA:1.20.1250.20 1 178 2.7E-25 T 13-10-2018 CLM_0048 3a35209ff834fc6ab78396c87bf520b0 369 SUPERFAMILY SSF103473 6 367 7.98E-46 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_2960 281dc794eef08f6a2647ccfa7006c85d 80 SUPERFAMILY SSF47413 14 77 4.69E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2960 281dc794eef08f6a2647ccfa7006c85d 80 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 18 80 3.1E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2960 281dc794eef08f6a2647ccfa7006c85d 80 Gene3D G3DSA:1.10.260.40 14 78 5.3E-8 T 13-10-2018 CLM_0919 1d8d71ed334948da305a34aaca729717 252 Gene3D G3DSA:3.40.50.150 30 252 2.3E-32 T 13-10-2018 CLM_0919 1d8d71ed334948da305a34aaca729717 252 Pfam PF13649 Methyltransferase domain 43 139 4.8E-18 T 13-10-2018 CLM_0919 1d8d71ed334948da305a34aaca729717 252 SUPERFAMILY SSF53335 15 217 8.26E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 514 543 6.9E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 415 444 6.9E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 SUPERFAMILY SSF103190 86 190 8.37E-12 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 SUPERFAMILY SSF58104 387 662 3.66E-58 T 13-10-2018 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 Gene3D G3DSA:3.30.450.20 184 277 4.0E-36 T 13-10-2018 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 Pfam PF02743 Cache domain 42 265 5.3E-35 T 13-10-2018 IPR033479 Double Cache domain 1 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 461 615 7.4E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 Gene3D G3DSA:3.30.450.20 97 183 4.0E-36 T 13-10-2018 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 Gene3D G3DSA:1.10.287.950 357 662 4.7E-59 T 13-10-2018 CLM_0654 07682e540ba0e89e78f9c96f7be7a885 663 SMART SM00283 387 662 1.2E-50 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2536 e5d01e53788c6444f4acceb0eae0240c 197 SUPERFAMILY SSF159006 65 196 2.22E-26 T 13-10-2018 CLM_2536 e5d01e53788c6444f4acceb0eae0240c 197 Pfam PF09643 YopX protein 68 195 3.6E-26 T 13-10-2018 IPR019096 YopX protein CLM_2536 e5d01e53788c6444f4acceb0eae0240c 197 Gene3D G3DSA:2.30.30.290 117 197 4.7E-12 T 13-10-2018 IPR023385 YopX-like, C-terminal CLM_1699 ecd53cbe13762013007f0f19ac1a4863 237 Pfam PF05949 Bacterial protein of unknown function (DUF881) 89 232 1.2E-34 T 13-10-2018 IPR010273 Protein of unknown function DUF881 CLM_1699 ecd53cbe13762013007f0f19ac1a4863 237 Gene3D G3DSA:3.30.70.1880 88 237 4.0E-33 T 13-10-2018 CLM_2446 1bf5909c66fa42dda3ede8608b9c3961 151 SUPERFAMILY SSF55729 2 148 5.91E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_2446 1bf5909c66fa42dda3ede8608b9c3961 151 Gene3D G3DSA:3.40.630.30 1 145 8.4E-45 T 13-10-2018 CLM_2446 1bf5909c66fa42dda3ede8608b9c3961 151 Pfam PF13673 Acetyltransferase (GNAT) domain 27 146 1.8E-20 T 13-10-2018 IPR000182 GNAT domain CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 102 116 3.5E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 98 3.5E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 117 130 3.5E-16 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 156 6.1E-40 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 112 129 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 Pfam PF00364 Biotin-requiring enzyme 82 155 1.3E-21 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 Gene3D G3DSA:2.40.50.100 79 155 1.4E-27 T 13-10-2018 CLM_4090 d275f867ce3ad9b6b93a00d60f16aa50 158 SUPERFAMILY SSF51230 79 155 3.66E-23 T 13-10-2018 IPR011053 Single hybrid motif CLM_2364 9827566e0b00a1b242774f3cad5a9826 145 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CLM_2364 9827566e0b00a1b242774f3cad5a9826 145 SUPERFAMILY SSF55804 1 145 1.14E-39 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CLM_2364 9827566e0b00a1b242774f3cad5a9826 145 Gene3D G3DSA:3.40.930.10 1 145 4.5E-54 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CLM_2364 9827566e0b00a1b242774f3cad5a9826 145 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 7.1E-37 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CLM_0881 2ec4aefa07fdba528389740864b2a261 379 Gene3D G3DSA:1.10.10.630 260 334 2.6E-13 T 13-10-2018 IPR034829 DnaD-like domain superfamily CLM_0881 2ec4aefa07fdba528389740864b2a261 379 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 266 333 3.1E-14 T 13-10-2018 IPR006343 DnaD domain CLM_0881 2ec4aefa07fdba528389740864b2a261 379 Pfam PF07261 Replication initiation and membrane attachment 268 335 1.5E-15 T 13-10-2018 IPR006343 DnaD domain CLM_0881 2ec4aefa07fdba528389740864b2a261 379 SUPERFAMILY SSF158499 267 328 1.02E-13 T 13-10-2018 IPR034829 DnaD-like domain superfamily CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 2 180 44.121 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 SUPERFAMILY SSF55282 4 179 4.94E-79 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 Gene3D G3DSA:3.30.1440.10 2 180 3.0E-83 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 Pfam PF00281 Ribosomal protein L5 25 81 1.9E-30 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 Pfam PF00673 ribosomal L5P family C-terminus 85 178 3.3E-41 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 ProSitePatterns PS00358 Ribosomal protein L5 signature. 58 74 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3936 6bdecf664c2fac964f03f61cc0b1a887 180 PIRSF PIRSF002161 1 180 1.5E-70 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3117 a328b66afd83a5fcaba9d0a64446f26a 162 Pfam PF03975 CheD chemotactic sensory transduction 49 154 4.1E-38 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 CLM_3117 a328b66afd83a5fcaba9d0a64446f26a 162 Gene3D G3DSA:3.30.1330.200 3 162 1.1E-50 T 13-10-2018 IPR038592 CheD-like superfamily CLM_3117 a328b66afd83a5fcaba9d0a64446f26a 162 SUPERFAMILY SSF64438 5 160 6.23E-51 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic CLM_3117 a328b66afd83a5fcaba9d0a64446f26a 162 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 2 158 28.698 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 Gene3D G3DSA:3.60.150.10 1 374 1.4E-133 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 PIRSF PIRSF001456 1 373 5.4E-119 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 Pfam PF01264 Chorismate synthase 2 356 4.1E-107 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 TIGRFAM TIGR00033 aroC: chorismate synthase 2 357 8.9E-109 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 ProSitePatterns PS00789 Chorismate synthase signature 3. 330 346 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 SUPERFAMILY SSF103263 1 371 3.01E-120 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 ProSitePatterns PS00787 Chorismate synthase signature 1. 8 23 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 Hamap MF_00300 Chorismate synthase [aroC]. 2 363 31.537 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_3412 b04713aa391f1ed0d8825993f6dd9ec1 374 ProSitePatterns PS00788 Chorismate synthase signature 2. 125 141 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 PRINTS PR00988 Uridine kinase signature 135 145 1.3E-35 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 PRINTS PR00988 Uridine kinase signature 4 21 1.3E-35 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 PRINTS PR00988 Uridine kinase signature 171 184 1.3E-35 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 PRINTS PR00988 Uridine kinase signature 149 160 1.3E-35 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 PRINTS PR00988 Uridine kinase signature 34 45 1.3E-35 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 PRINTS PR00988 Uridine kinase signature 79 94 1.3E-35 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 Hamap MF_00551 Uridine kinase [udk]. 1 205 41.558 T 13-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 6 191 3.8E-44 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 SUPERFAMILY SSF52540 2 196 7.07E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2861 41f1524d98d448c2c14a96c93474600e 206 Gene3D G3DSA:3.40.50.300 1 206 5.9E-69 T 13-10-2018 CLM_2861 41f1524d98d448c2c14a96c93474600e 206 TIGRFAM TIGR00235 udk: uridine kinase 4 204 2.8E-89 T 13-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 CLM_3508 f8960d4fb91aef9b4b3754b3480394ec 367 Gene3D G3DSA:3.40.50.2000 183 349 1.1E-20 T 13-10-2018 CLM_3508 f8960d4fb91aef9b4b3754b3480394ec 367 Pfam PF13692 Glycosyl transferases group 1 207 310 1.5E-6 T 13-10-2018 CLM_3508 f8960d4fb91aef9b4b3754b3480394ec 367 SUPERFAMILY SSF53756 86 359 2.39E-16 T 13-10-2018 CLM_3844 bb2f36d248080cf102fb9ed6b7390f77 298 SUPERFAMILY SSF109604 147 287 5.58E-14 T 13-10-2018 CLM_3844 bb2f36d248080cf102fb9ed6b7390f77 298 Gene3D G3DSA:2.40.50.140 1 99 7.0E-7 T 13-10-2018 CLM_3844 bb2f36d248080cf102fb9ed6b7390f77 298 Gene3D G3DSA:1.10.3210.10 138 297 2.9E-11 T 13-10-2018 CLM_3844 bb2f36d248080cf102fb9ed6b7390f77 298 Pfam PF01336 OB-fold nucleic acid binding domain 16 89 1.4E-6 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CLM_3844 bb2f36d248080cf102fb9ed6b7390f77 298 SUPERFAMILY SSF50249 2 103 1.32E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3844 bb2f36d248080cf102fb9ed6b7390f77 298 Pfam PF01966 HD domain 165 287 2.5E-7 T 13-10-2018 IPR006674 HD domain CLM_1314 f5422adb0650732d1ff78b7f4799c173 301 Pfam PF02653 Branched-chain amino acid transport system / permease component 4 267 2.6E-28 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 Pfam PF01471 Putative peptidoglycan binding domain 258 311 9.8E-14 T 13-10-2018 IPR002477 Peptidoglycan binding-like CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 Pfam PF01183 Glycosyl hydrolases family 25 5 182 3.9E-30 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 Gene3D G3DSA:3.20.20.80 1 193 1.2E-59 T 13-10-2018 CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 SUPERFAMILY SSF47090 241 312 3.4E-19 T 13-10-2018 IPR036365 PGBD-like superfamily CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 SMART SM00641 2 115 1.8E-5 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 Gene3D G3DSA:1.10.101.10 240 316 3.8E-21 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CLM_0899 a7725edb6a8dd818cb0ed368a5813103 316 SUPERFAMILY SSF51445 3 198 5.9E-48 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 1.8E-10 T 13-10-2018 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 341 361 1.8E-10 T 13-10-2018 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 1.8E-10 T 13-10-2018 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 1.8E-10 T 13-10-2018 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 SUPERFAMILY SSF103473 9 470 4.97E-74 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 428 8.9E-90 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 Gene3D G3DSA:1.20.1720.10 18 253 5.8E-48 T 13-10-2018 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 Gene3D G3DSA:1.20.1250.20 263 474 4.9E-30 T 13-10-2018 CLM_0752 1e0a47ca874eb4348a7f8d912b20bc43 477 Pfam PF07690 Major Facilitator Superfamily 25 413 2.1E-59 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_3794 4841103a0323e998a0d200082869847e 190 Pfam PF08281 Sigma-70, region 4 120 173 3.3E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CLM_3794 4841103a0323e998a0d200082869847e 190 Gene3D G3DSA:1.10.1740.10 2 105 2.2E-21 T 13-10-2018 CLM_3794 4841103a0323e998a0d200082869847e 190 Pfam PF04542 Sigma-70 region 2 23 88 1.4E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3794 4841103a0323e998a0d200082869847e 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 176 3.5E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_3794 4841103a0323e998a0d200082869847e 190 Gene3D G3DSA:1.10.10.10 109 181 5.4E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3794 4841103a0323e998a0d200082869847e 190 SUPERFAMILY SSF88659 110 177 1.4E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_3794 4841103a0323e998a0d200082869847e 190 SUPERFAMILY SSF88946 3 98 4.97E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0334 f29f3675ce562bf56d2e1bfe5aa74fa2 656 Pfam PF02687 FtsX-like permease family 90 182 1.6E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0334 f29f3675ce562bf56d2e1bfe5aa74fa2 656 PIRSF PIRSF018968 1 655 9.1E-105 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 CLM_2046 930f86d39c29d6f0b6fcf40376c78d37 1308 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 283 677 2.2E-46 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_2046 930f86d39c29d6f0b6fcf40376c78d37 1308 Pfam PF10145 Phage-related minor tail protein 315 508 1.7E-18 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_2923 930f86d39c29d6f0b6fcf40376c78d37 1308 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 283 677 2.2E-46 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_2923 930f86d39c29d6f0b6fcf40376c78d37 1308 Pfam PF10145 Phage-related minor tail protein 315 508 1.7E-18 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_0868 c72bcc4e0e0aab7afb8bbea3a39c9fb5 380 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 377 2.6E-152 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_0868 c72bcc4e0e0aab7afb8bbea3a39c9fb5 380 Gene3D G3DSA:3.90.1150.10 246 380 2.5E-50 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0868 c72bcc4e0e0aab7afb8bbea3a39c9fb5 380 PIRSF PIRSF001434 1 380 1.3E-142 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_0868 c72bcc4e0e0aab7afb8bbea3a39c9fb5 380 Gene3D G3DSA:3.40.640.10 2 245 1.8E-92 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0868 c72bcc4e0e0aab7afb8bbea3a39c9fb5 380 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 187 201 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CLM_0868 c72bcc4e0e0aab7afb8bbea3a39c9fb5 380 SUPERFAMILY SSF53383 8 377 1.16E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3804 40e55ee61933e3b2295faa2a20dc409c 98 Gene3D G3DSA:1.20.58.280 1 98 3.4E-36 T 13-10-2018 CLM_3804 40e55ee61933e3b2295faa2a20dc409c 98 SUPERFAMILY SSF46973 1 95 8.37E-36 T 13-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 CLM_3804 40e55ee61933e3b2295faa2a20dc409c 98 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 4 95 6.8E-36 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CLM_3804 40e55ee61933e3b2295faa2a20dc409c 98 PIRSF PIRSF000699 1 98 1.4E-37 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CLM_2888 e0a9827332cb07a1f141482b935026c7 449 Pfam PF01554 MatE 262 408 4.1E-17 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2888 e0a9827332cb07a1f141482b935026c7 449 Pfam PF01554 MatE 30 190 1.5E-19 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2888 e0a9827332cb07a1f141482b935026c7 449 TIGRFAM TIGR00797 matE: MATE efflux family protein 31 418 8.9E-53 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2888 e0a9827332cb07a1f141482b935026c7 449 PIRSF PIRSF006603 5 448 1.9E-79 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1306 2e951076fde97c1d82eaa92716197816 562 Gene3D G3DSA:1.10.3720.10 22 282 7.3E-49 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1306 2e951076fde97c1d82eaa92716197816 562 Gene3D G3DSA:1.10.3720.10 298 554 1.3E-38 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1306 2e951076fde97c1d82eaa92716197816 562 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 271 1.4E-8 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1306 2e951076fde97c1d82eaa92716197816 562 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 367 542 6.3E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1306 2e951076fde97c1d82eaa92716197816 562 SUPERFAMILY SSF161098 308 542 2.29E-38 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1306 2e951076fde97c1d82eaa92716197816 562 SUPERFAMILY SSF161098 22 275 7.57E-45 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0430 b756c3b25c86999216c8b186f5b3ce1d 440 SUPERFAMILY SSF53383 26 430 1.1E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0430 b756c3b25c86999216c8b186f5b3ce1d 440 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 223 242 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLM_0430 b756c3b25c86999216c8b186f5b3ce1d 440 Gene3D G3DSA:3.90.1150.10 24 422 2.2E-108 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0430 b756c3b25c86999216c8b186f5b3ce1d 440 Gene3D G3DSA:3.40.640.10 49 307 2.2E-108 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0430 b756c3b25c86999216c8b186f5b3ce1d 440 Pfam PF00266 Aminotransferase class-V 31 420 2.4E-85 T 13-10-2018 IPR000192 Aminotransferase class V domain CLM_0587 dbd5931b026c226506e5eb46d8720cff 382 Gene3D G3DSA:3.40.1710.10 41 144 4.4E-9 T 13-10-2018 CLM_0587 dbd5931b026c226506e5eb46d8720cff 382 Pfam PF12698 ABC-2 family transporter protein 19 370 1.6E-48 T 13-10-2018 CLM_0268 6e1b83ab81100645620f3a3a3ea9814d 279 Gene3D G3DSA:3.40.50.10170 1 153 9.7E-57 T 13-10-2018 CLM_0268 6e1b83ab81100645620f3a3a3ea9814d 279 Gene3D G3DSA:3.30.1180.10 154 279 2.0E-31 T 13-10-2018 CLM_0268 6e1b83ab81100645620f3a3a3ea9814d 279 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 277 5.3E-95 T 13-10-2018 IPR003797 DegV CLM_0268 6e1b83ab81100645620f3a3a3ea9814d 279 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 4 276 1.5E-96 T 13-10-2018 IPR003797 DegV CLM_0268 6e1b83ab81100645620f3a3a3ea9814d 279 SUPERFAMILY SSF82549 3 278 1.39E-86 T 13-10-2018 CLM_0146 bba2d3c7a23489e4cf6662550f309e6f 429 Pfam PF01969 Protein of unknown function DUF111 5 421 3.3E-156 T 13-10-2018 IPR002822 Nickel insertion protein CLM_0146 bba2d3c7a23489e4cf6662550f309e6f 429 Hamap MF_01074 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel insertion protein [larC]. 2 429 40.686 T 13-10-2018 IPR002822 Nickel insertion protein CLM_0146 bba2d3c7a23489e4cf6662550f309e6f 429 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 4 421 1.2E-112 T 13-10-2018 IPR002822 Nickel insertion protein CLM_0146 bba2d3c7a23489e4cf6662550f309e6f 429 Gene3D G3DSA:3.10.20.300 372 429 4.4E-7 T 13-10-2018 CLM_0146 bba2d3c7a23489e4cf6662550f309e6f 429 Gene3D G3DSA:3.30.70.1380 281 371 3.2E-18 T 13-10-2018 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 Pfam PF01252 Signal peptidase (SPase) II 6 144 3.3E-35 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 125 141 1.8E-16 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 88 103 1.8E-16 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 44 52 1.8E-16 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 1 147 15.897 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 ProSitePatterns PS00855 Signal peptidases II signature. 91 103 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_1712 d9141662b6e8aeb435fc8bca3735b226 147 TIGRFAM TIGR00077 lspA: signal peptidase II 4 145 3.8E-33 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 SUPERFAMILY SSF55347 153 315 1.73E-75 T 13-10-2018 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 326 2.9E-141 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 SUPERFAMILY SSF51735 2 169 1.39E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0276 b780694e970a6b1208edd7353eab7c72 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 314 3.1E-72 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 103 2.6E-39 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 2.3E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 2.3E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 2.3E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 2.3E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 2.3E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 Gene3D G3DSA:3.40.50.720 3 329 3.6E-158 T 13-10-2018 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 PIRSF PIRSF000149 1 335 1.2E-140 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 Gene3D G3DSA:3.30.360.10 152 316 3.6E-158 T 13-10-2018 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0276 b780694e970a6b1208edd7353eab7c72 335 SMART SM00846 2 153 2.4E-95 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 182 202 3.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 44 62 3.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 64 87 3.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 127 146 3.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 295 321 3.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 Pfam PF06723 MreB/Mbl protein 7 330 3.4E-150 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 Gene3D G3DSA:3.30.420.40 149 312 2.7E-130 T 13-10-2018 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 Gene3D G3DSA:3.90.640.10 181 254 2.7E-130 T 13-10-2018 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 330 6.6E-143 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 SUPERFAMILY SSF53067 7 141 2.88E-42 T 13-10-2018 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 Gene3D G3DSA:3.30.420.40 9 323 2.7E-130 T 13-10-2018 CLM_0207 6c0fe940fd649dc8ca921ecac7d84329 342 SUPERFAMILY SSF53067 144 328 1.57E-48 T 13-10-2018 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 TIGRFAM TIGR01078 arcA: arginine deiminase 5 406 5.1E-166 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PRINTS PR01466 Bacterial arginine deiminase signature 3 23 1.7E-54 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PRINTS PR01466 Bacterial arginine deiminase signature 363 377 1.7E-54 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PRINTS PR01466 Bacterial arginine deiminase signature 343 360 1.7E-54 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PRINTS PR01466 Bacterial arginine deiminase signature 386 404 1.7E-54 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PRINTS PR01466 Bacterial arginine deiminase signature 152 170 1.7E-54 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PRINTS PR01466 Bacterial arginine deiminase signature 180 195 1.7E-54 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 Pfam PF02274 Amidinotransferase 19 404 1.7E-103 T 13-10-2018 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 Hamap MF_00242 Arginine deiminase [arcA]. 2 407 44.98 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 Gene3D G3DSA:1.10.3930.10 69 152 5.0E-162 T 13-10-2018 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 Gene3D G3DSA:3.75.10.10 6 402 5.0E-162 T 13-10-2018 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 PIRSF PIRSF006356 1 407 6.3E-164 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_1828 402643cde9779a882e66a3546b3ede1f 408 SUPERFAMILY SSF55909 2 407 2.29E-127 T 13-10-2018 CLM_0424 41eabf19d8f83f5e53483a2f9196de71 224 Pfam PF09335 SNARE associated Golgi protein 67 183 3.4E-31 T 13-10-2018 IPR032816 SNARE associated Golgi protein CLM_1731 79ebe3546c2db20239b0d6ba77a57d67 290 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 13 235 6.9E-37 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CLM_1731 79ebe3546c2db20239b0d6ba77a57d67 290 SUPERFAMILY SSF51726 16 228 3.14E-28 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1731 79ebe3546c2db20239b0d6ba77a57d67 290 Gene3D G3DSA:3.20.20.210 9 250 1.9E-38 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_0017 654bd937b42f679cd78a8c1db9e2bc94 387 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 356 367 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0017 654bd937b42f679cd78a8c1db9e2bc94 387 Gene3D G3DSA:3.30.70.3270 304 385 3.3E-11 T 13-10-2018 CLM_0017 654bd937b42f679cd78a8c1db9e2bc94 387 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 321 332 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0017 654bd937b42f679cd78a8c1db9e2bc94 387 Pfam PF04015 Domain of unknown function (DUF362) 44 242 9.2E-46 T 13-10-2018 IPR007160 Domain of unknown function DUF362 CLM_0017 654bd937b42f679cd78a8c1db9e2bc94 387 SUPERFAMILY SSF54862 302 374 7.12E-15 T 13-10-2018 CLM_0017 654bd937b42f679cd78a8c1db9e2bc94 387 Pfam PF13237 4Fe-4S dicluster domain 318 367 1.7E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0578 52aea0621206d9a832a5210b59a21b23 310 SUPERFAMILY SSF52540 3 226 1.02E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0578 52aea0621206d9a832a5210b59a21b23 310 Pfam PF00005 ABC transporter 19 162 9.4E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0578 52aea0621206d9a832a5210b59a21b23 310 SMART SM00382 28 211 6.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0578 52aea0621206d9a832a5210b59a21b23 310 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0578 52aea0621206d9a832a5210b59a21b23 310 Gene3D G3DSA:3.40.50.300 1 240 3.3E-75 T 13-10-2018 CLM_1567 6decbab03f1e2ebec31c32b554ca1326 629 PIRSF PIRSF018968 1 629 3.4E-119 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 CLM_1567 6decbab03f1e2ebec31c32b554ca1326 629 Pfam PF02687 FtsX-like permease family 85 180 1.3E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0700 bef0bac70203c06764737caac6bee672 288 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 4 279 1.9E-88 T 13-10-2018 IPR003797 DegV CLM_0700 bef0bac70203c06764737caac6bee672 288 Gene3D G3DSA:3.40.50.10170 1 152 2.4E-48 T 13-10-2018 CLM_0700 bef0bac70203c06764737caac6bee672 288 SUPERFAMILY SSF82549 2 280 8.89E-78 T 13-10-2018 CLM_0700 bef0bac70203c06764737caac6bee672 288 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 280 1.1E-84 T 13-10-2018 IPR003797 DegV CLM_0700 bef0bac70203c06764737caac6bee672 288 Gene3D G3DSA:3.30.1180.10 153 285 3.5E-39 T 13-10-2018 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 SMART SM00388 123 189 1.4E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 Gene3D G3DSA:3.30.565.10 194 343 5.6E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 PRINTS PR00344 Bacterial sensor protein C-terminal signature 304 322 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 PRINTS PR00344 Bacterial sensor protein C-terminal signature 271 285 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 299 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 341 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 SUPERFAMILY SSF47384 108 189 7.65E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 235 340 1.1E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 SMART SM00387 234 343 2.1E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 Gene3D G3DSA:1.10.287.130 114 188 7.2E-10 T 13-10-2018 CLM_0621 5a1c348605a80a90ff2c7a8aaeef2db2 343 SUPERFAMILY SSF55874 180 340 7.33E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 Gene3D G3DSA:2.40.100.10 1 167 4.3E-57 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 19 34 2.3E-19 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.3E-19 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 117 2.3E-19 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 57 2.3E-19 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5 156 6.2E-48 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 SUPERFAMILY SSF50891 4 159 6.14E-53 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CLM_4054 52b7c91072b9afdba5dc551e7659b6f2 172 PIRSF PIRSF001467 3 162 1.4E-39 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 CLM_2851 0d1f12f6bbd817a42c9dc36a9766c9ae 158 TIGRFAM TIGR02271 TIGR02271: conserved domain 32 145 2.8E-46 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_2851 0d1f12f6bbd817a42c9dc36a9766c9ae 158 Pfam PF09557 Domain of unknown function (DUF2382) 32 140 1.5E-29 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_3328 67c13af2a0cc05a7a08c8de2e62309fa 244 Pfam PF02591 C4-type zinc ribbon domain 200 232 1.3E-11 T 13-10-2018 IPR003743 C4-type zinc ribbon domain CLM_4046 e7dff2ac86763a77a5b63f3479885d77 239 SUPERFAMILY SSF142823 1 234 2.48E-79 T 13-10-2018 IPR036702 ComB-like superfamily GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 CLM_4046 e7dff2ac86763a77a5b63f3479885d77 239 Pfam PF04029 2-phosphosulpholactate phosphatase 10 231 6.4E-82 T 13-10-2018 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 CLM_4046 e7dff2ac86763a77a5b63f3479885d77 239 Gene3D G3DSA:3.90.1560.10 1 235 2.1E-89 T 13-10-2018 IPR036702 ComB-like superfamily GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 CLM_4046 e7dff2ac86763a77a5b63f3479885d77 239 Hamap MF_00490 2-phosphosulfolactate phosphatase [comB]. 5 238 32.498 T 13-10-2018 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 CLM_1278 9e6a145de4782eef33eef23930176370 477 SUPERFAMILY SSF55874 275 445 3.54E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1278 9e6a145de4782eef33eef23930176370 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 286 3.3E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1278 9e6a145de4782eef33eef23930176370 477 Gene3D G3DSA:3.30.565.10 293 454 8.5E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1278 9e6a145de4782eef33eef23930176370 477 Gene3D G3DSA:1.10.287.130 200 288 3.3E-18 T 13-10-2018 CLM_1278 9e6a145de4782eef33eef23930176370 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 443 8.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1278 9e6a145de4782eef33eef23930176370 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 384 8.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1278 9e6a145de4782eef33eef23930176370 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 424 8.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1278 9e6a145de4782eef33eef23930176370 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 398 8.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1278 9e6a145de4782eef33eef23930176370 477 SUPERFAMILY SSF47384 206 286 2.94E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1278 9e6a145de4782eef33eef23930176370 477 SMART SM00387 332 446 1.2E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1278 9e6a145de4782eef33eef23930176370 477 SMART SM00388 218 286 3.5E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1278 9e6a145de4782eef33eef23930176370 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 445 1.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0863 3e4b9a1b694069a9a9764304595fbdb4 430 Pfam PF13289 SIR2-like domain 117 249 3.3E-25 T 13-10-2018 IPR039444 SIR2-like domain CLM_0863 3e4b9a1b694069a9a9764304595fbdb4 430 SUPERFAMILY SSF52467 14 217 1.63E-7 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_1183 c98917c5c76c0bb46e9395f93433a678 252 SUPERFAMILY SSF55729 61 117 1.26E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1183 c98917c5c76c0bb46e9395f93433a678 252 Pfam PF14268 YoaP-like 203 245 2.1E-17 T 13-10-2018 IPR025685 YoaP-like domain CLM_1706 f5cd522a3b0d1ea339f25a083de3bb1b 219 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 36 3.2E-17 T 13-10-2018 IPR019933 DivIVA domain CLM_1706 f5cd522a3b0d1ea339f25a083de3bb1b 219 Pfam PF05103 DivIVA protein 3 133 7.4E-48 T 13-10-2018 IPR007793 DivIVA family CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 Gene3D G3DSA:3.40.50.2030 251 399 7.9E-71 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 Gene3D G3DSA:1.20.1270.20 1 165 6.3E-44 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 3 568 1.3E-240 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 Gene3D G3DSA:1.20.1270.20 166 249 1.1E-33 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 Hamap MF_00069 Hydroxylamine reductase [hcp]. 3 570 24.301 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 Gene3D G3DSA:3.40.50.2030 400 569 1.9E-64 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 Pfam PF03063 Prismane/CO dehydrogenase family 3 566 2.4E-188 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 SUPERFAMILY SSF56821 3 569 4.27E-213 T 13-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 CLM_3158 633e0e26583aa660e1bc45ed88db77b5 570 PIRSF PIRSF000076 3 570 4.6E-273 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 CLM_3962 e1e21063e9a4f2a7f00b0916d1e078af 75 Hamap MF_00422 Protein translocase subunit SecE [secE]. 16 71 12.316 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3962 e1e21063e9a4f2a7f00b0916d1e078af 75 Gene3D G3DSA:1.20.5.1030 16 72 2.1E-16 T 13-10-2018 IPR038379 SecE superfamily CLM_3962 e1e21063e9a4f2a7f00b0916d1e078af 75 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 20 74 4.1E-17 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CLM_3962 e1e21063e9a4f2a7f00b0916d1e078af 75 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 20 72 4.4E-13 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CLM_3943 448625c942122d9b72ca9099cb6ae643 111 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3943 448625c942122d9b72ca9099cb6ae643 111 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 5.6E-42 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3943 448625c942122d9b72ca9099cb6ae643 111 Pfam PF00237 Ribosomal protein L22p/L17e 6 108 9.2E-37 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CLM_3943 448625c942122d9b72ca9099cb6ae643 111 SUPERFAMILY SSF54843 1 110 7.19E-44 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3943 448625c942122d9b72ca9099cb6ae643 111 Gene3D G3DSA:3.90.470.10 1 111 1.6E-47 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3943 448625c942122d9b72ca9099cb6ae643 111 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.513 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3466 5f854db0be137a903fbb0fc2f512793d 292 Pfam PF01368 DHH family 42 189 4.5E-8 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_3466 5f854db0be137a903fbb0fc2f512793d 292 Gene3D G3DSA:3.90.1640.30 16 283 5.5E-66 T 13-10-2018 CLM_3466 5f854db0be137a903fbb0fc2f512793d 292 SUPERFAMILY SSF64182 18 282 4.58E-56 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CLM_3714 5df2b93f1fc045002f358040f425ca62 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_3714 5df2b93f1fc045002f358040f425ca62 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_3714 5df2b93f1fc045002f358040f425ca62 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 7.0E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_3714 5df2b93f1fc045002f358040f425ca62 214 SUPERFAMILY SSF46689 18 73 4.69E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3714 5df2b93f1fc045002f358040f425ca62 214 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 69 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLM_3714 5df2b93f1fc045002f358040f425ca62 214 Gene3D G3DSA:1.10.357.10 16 207 1.6E-28 T 13-10-2018 CLM_3041 8ec2cc1c11077be1cdaaa2a5cfdc9e8c 149 PIRSF PIRSF019083 1 149 2.3E-40 T 13-10-2018 IPR016747 Phosphotransbutyrylase CLM_3041 8ec2cc1c11077be1cdaaa2a5cfdc9e8c 149 Pfam PF04892 VanZ like family 11 139 3.0E-25 T 13-10-2018 IPR006976 VanZ-like CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 Gene3D G3DSA:3.40.50.720 104 302 2.3E-117 T 13-10-2018 CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 Gene3D G3DSA:3.40.50.720 3 322 2.3E-117 T 13-10-2018 CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 302 1.3E-55 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 334 8.0E-26 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 177 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 SUPERFAMILY SSF52283 2 137 8.13E-34 T 13-10-2018 CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 199 221 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLM_3716 23bbcb88de1bd650083704ba041eab4b 334 SUPERFAMILY SSF51735 104 303 5.18E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3292 764bd3aa86458c1955a8ccf59ee79b44 264 SUPERFAMILY SSF52540 3 227 5.01E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3292 764bd3aa86458c1955a8ccf59ee79b44 264 Gene3D G3DSA:3.40.50.300 1 257 1.9E-60 T 13-10-2018 CLM_3292 764bd3aa86458c1955a8ccf59ee79b44 264 Pfam PF00005 ABC transporter 19 167 2.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3292 764bd3aa86458c1955a8ccf59ee79b44 264 SMART SM00382 27 216 1.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3292 764bd3aa86458c1955a8ccf59ee79b44 264 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PIRSF PIRSF000532 1 318 6.7E-121 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 318 48.094 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 Gene3D G3DSA:3.40.50.460 142 251 6.2E-114 T 13-10-2018 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 261 1.2E-84 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 ProSitePatterns PS00433 Phosphofructokinase signature. 243 261 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 Pfam PF00365 Phosphofructokinase 4 275 6.2E-110 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 SUPERFAMILY SSF53784 2 316 1.7E-116 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 299 3.3E-131 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CLM_3835 c07a881e1b071bdb01f7d402c21a5120 319 Gene3D G3DSA:3.40.50.450 4 286 6.2E-114 T 13-10-2018 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 SUPERFAMILY SSF52540 5 249 5.92E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 229 309 6.9E-13 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 Gene3D G3DSA:3.40.50.300 313 560 1.0E-68 T 13-10-2018 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 Gene3D G3DSA:3.40.50.300 2 312 1.5E-79 T 13-10-2018 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 290 7.9E-10 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 Pfam PF00005 ABC transporter 23 179 1.1E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 ProSitePatterns PS00211 ABC transporters family signature. 459 473 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 Pfam PF00005 ABC transporter 339 485 6.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 SUPERFAMILY SSF52540 316 557 5.01E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 SMART SM00382 32 230 8.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1915 93ce5a272bfa720cd8d899635bd11453 560 SMART SM00382 345 536 4.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3620 651237f1d462f5a8f21301e6f2115310 254 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 1 251 17.126 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CLM_3620 651237f1d462f5a8f21301e6f2115310 254 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 3 245 3.3E-75 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CLM_3620 651237f1d462f5a8f21301e6f2115310 254 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 129 141 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CLM_3620 651237f1d462f5a8f21301e6f2115310 254 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 251 1.0E-71 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CLM_2250 1fd5d7114fe5adb83df6705e44468c15 259 Gene3D G3DSA:3.10.310.10 3 250 1.9E-99 T 13-10-2018 CLM_2250 1fd5d7114fe5adb83df6705e44468c15 259 Pfam PF02567 Phenazine biosynthesis-like protein 6 250 2.9E-57 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_2250 1fd5d7114fe5adb83df6705e44468c15 259 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 221 6.7E-40 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_2250 1fd5d7114fe5adb83df6705e44468c15 259 SUPERFAMILY SSF54506 2 251 3.66E-80 T 13-10-2018 CLM_2250 1fd5d7114fe5adb83df6705e44468c15 259 PIRSF PIRSF016184 1 258 2.3E-60 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_2250 1fd5d7114fe5adb83df6705e44468c15 259 Gene3D G3DSA:3.10.310.10 115 246 1.9E-99 T 13-10-2018 CLM_0443 2aeeb1a65abf87b0be2f431c3710a28d 178 PIRSF PIRSF027391 3 178 9.2E-58 T 13-10-2018 IPR014535 Predicted heptaprenyl diphosphate synthase, component I CLM_0443 2aeeb1a65abf87b0be2f431c3710a28d 178 Gene3D G3DSA:1.10.1760.20 1 171 2.5E-17 T 13-10-2018 CLM_0443 2aeeb1a65abf87b0be2f431c3710a28d 178 Pfam PF07456 Heptaprenyl diphosphate synthase component I 17 160 1.3E-49 T 13-10-2018 IPR010898 Heptaprenyl diphosphate synthase component I CLM_2284 74d96204c2d8e110a926ee98dad5ba65 374 SUPERFAMILY SSF102114 90 268 1.96E-15 T 13-10-2018 CLM_2284 74d96204c2d8e110a926ee98dad5ba65 374 Gene3D G3DSA:3.20.20.70 88 318 3.3E-14 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2115 b235930efd2222a51fe219eb152e536f 147 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 147 59.385 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_2115 b235930efd2222a51fe219eb152e536f 147 Gene3D G3DSA:3.40.50.9100 1 146 3.2E-60 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_2115 b235930efd2222a51fe219eb152e536f 147 Pfam PF01220 Dehydroquinase class II 3 139 1.3E-57 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_2115 b235930efd2222a51fe219eb152e536f 147 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 140 3.0E-45 T 13-10-2018 CLM_2115 b235930efd2222a51fe219eb152e536f 147 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 3.0E-59 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_2115 b235930efd2222a51fe219eb152e536f 147 PIRSF PIRSF001399 1 146 5.0E-64 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_2115 b235930efd2222a51fe219eb152e536f 147 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_2115 b235930efd2222a51fe219eb152e536f 147 SUPERFAMILY SSF52304 3 143 2.75E-57 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CLM_0423 20ca4c4e328685be30b738d5f3d2dc3f 188 Pfam PF06962 Putative rRNA methylase 51 186 8.0E-54 T 13-10-2018 IPR010719 Putative rRNA methylase CLM_0423 20ca4c4e328685be30b738d5f3d2dc3f 188 Gene3D G3DSA:3.40.50.150 2 188 3.2E-68 T 13-10-2018 CLM_0423 20ca4c4e328685be30b738d5f3d2dc3f 188 SUPERFAMILY SSF53335 21 154 6.18E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3609 6ab15dc814415af5828c1450205ec618 335 SMART SM00893 10 199 9.7E-57 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_3609 6ab15dc814415af5828c1450205ec618 335 Gene3D G3DSA:3.40.50.1220 207 335 1.4E-54 T 13-10-2018 CLM_3609 6ab15dc814415af5828c1450205ec618 335 SUPERFAMILY SSF52467 211 329 2.89E-46 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLM_3609 6ab15dc814415af5828c1450205ec618 335 Gene3D G3DSA:3.40.50.620 6 206 2.7E-80 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3609 6ab15dc814415af5828c1450205ec618 335 Pfam PF01012 Electron transfer flavoprotein domain 10 188 8.7E-48 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_3609 6ab15dc814415af5828c1450205ec618 335 PIRSF PIRSF000089 6 335 2.4E-118 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CLM_3609 6ab15dc814415af5828c1450205ec618 335 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 274 300 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CLM_3609 6ab15dc814415af5828c1450205ec618 335 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 211 293 1.1E-35 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CLM_3609 6ab15dc814415af5828c1450205ec618 335 SUPERFAMILY SSF52402 8 202 3.42E-58 T 13-10-2018 CLM_2663 f06a88fa69448a66e1fed61eec742560 412 Gene3D G3DSA:3.40.50.300 11 232 1.4E-52 T 13-10-2018 CLM_2663 f06a88fa69448a66e1fed61eec742560 412 Pfam PF17288 Terminase RNAseH like domain 262 401 3.6E-19 T 13-10-2018 IPR035413 Phage terminase large subunit, C-terminal CLM_2663 f06a88fa69448a66e1fed61eec742560 412 TIGRFAM TIGR01547 phage_term_2: phage terminase, large subunit, PBSX family 26 403 8.6E-56 T 13-10-2018 IPR006437 Bacteriophage terminase, large subunit GO:0006323 CLM_2663 f06a88fa69448a66e1fed61eec742560 412 Pfam PF04466 Phage terminase large subunit 24 229 1.3E-49 T 13-10-2018 IPR035412 Phage terminase large subunit, N-terminal CLM_2663 f06a88fa69448a66e1fed61eec742560 412 Gene3D G3DSA:3.30.420.280 236 411 1.3E-50 T 13-10-2018 CLM_1194 cf34c02b5d8fcbd7a9435981e317dc4f 419 Pfam PF00067 Cytochrome P450 277 397 1.2E-16 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CLM_1194 cf34c02b5d8fcbd7a9435981e317dc4f 419 SUPERFAMILY SSF48264 13 417 1.83E-66 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 CLM_1194 cf34c02b5d8fcbd7a9435981e317dc4f 419 PRINTS PR00463 E-class P450 group I signature 365 388 7.0E-8 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CLM_1194 cf34c02b5d8fcbd7a9435981e317dc4f 419 PRINTS PR00463 E-class P450 group I signature 319 343 7.0E-8 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CLM_1194 cf34c02b5d8fcbd7a9435981e317dc4f 419 PRINTS PR00463 E-class P450 group I signature 253 279 7.0E-8 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CLM_1194 cf34c02b5d8fcbd7a9435981e317dc4f 419 Gene3D G3DSA:1.10.630.10 3 419 1.7E-159 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 CLM_3089 bb16327524f72ebc461507af53aee533 342 SUPERFAMILY SSF56059 107 332 1.69E-34 T 13-10-2018 CLM_3089 bb16327524f72ebc461507af53aee533 342 Gene3D G3DSA:3.30.470.20 186 240 8.6E-58 T 13-10-2018 CLM_3089 bb16327524f72ebc461507af53aee533 342 Gene3D G3DSA:3.30.470.20 255 332 4.6E-19 T 13-10-2018 CLM_3089 bb16327524f72ebc461507af53aee533 342 Gene3D G3DSA:3.40.50.20 3 97 8.6E-58 T 13-10-2018 CLM_3089 bb16327524f72ebc461507af53aee533 342 Pfam PF02655 ATP-grasp domain 105 240 2.7E-22 T 13-10-2018 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 CLM_3089 bb16327524f72ebc461507af53aee533 342 Gene3D G3DSA:3.30.1490.20 98 185 8.6E-58 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CLM_1202 bde56d9c156b95ef4b17e6201e79a055 316 Pfam PF01032 FecCD transport family 18 312 5.4E-48 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_1202 bde56d9c156b95ef4b17e6201e79a055 316 Gene3D G3DSA:1.10.3470.10 5 315 5.8E-50 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1202 bde56d9c156b95ef4b17e6201e79a055 316 SUPERFAMILY SSF81345 5 312 3.01E-52 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_3638 d5c519b378a0aabbb717f8cca152dd69 241 Pfam PF02517 CAAX protease self-immunity 142 231 7.8E-15 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 5.8E-114 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 SUPERFAMILY SSF51395 10 317 3.85E-88 T 13-10-2018 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 PIRSF PIRSF006621 1 321 1.4E-106 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 Pfam PF01207 Dihydrouridine synthase (Dus) 14 313 1.3E-95 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 Gene3D G3DSA:1.10.1200.80 251 321 1.7E-13 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CLM_4007 f23010430163da0d7a510627a3ea8e6b 323 Gene3D G3DSA:3.20.20.70 7 249 5.5E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4023 fa23aba70339b084a62bb62d837c406c 132 TIGRFAM TIGR02893 spore_yabQ: spore cortex biosynthesis protein YabQ 4 120 3.4E-38 T 13-10-2018 IPR014242 Spore cortex biosynthesis protein, YabQ CLM_4023 fa23aba70339b084a62bb62d837c406c 132 Pfam PF09578 Spore cortex protein YabQ (Spore_YabQ) 13 90 1.3E-15 T 13-10-2018 IPR019074 Spore cortex biosynthesis protein, YabQ-like CLM_1274 a057efbdd1f096fa5c0cb2801c64b95a 184 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CLM_1274 a057efbdd1f096fa5c0cb2801c64b95a 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 162 5.6E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_1274 a057efbdd1f096fa5c0cb2801c64b95a 184 Gene3D G3DSA:2.160.10.10 2 183 1.3E-71 T 13-10-2018 CLM_1274 a057efbdd1f096fa5c0cb2801c64b95a 184 SUPERFAMILY SSF51161 5 183 2.08E-54 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_1274 a057efbdd1f096fa5c0cb2801c64b95a 184 SMART SM01266 7 58 1.7E-19 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CLM_1274 a057efbdd1f096fa5c0cb2801c64b95a 184 Pfam PF12464 Maltose acetyltransferase 9 57 5.6E-16 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CLM_3022 7c9baca8b47f32e95da85c033967ea86 273 Pfam PF03963 Flagellar hook capping protein - N-terminal region 43 109 1.0E-19 T 13-10-2018 IPR005648 Flagellar hook capping protein CLM_3146 34d98e6be700a8849cd652f695a39ec5 138 SUPERFAMILY SSF52218 3 137 1.65E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3146 34d98e6be700a8849cd652f695a39ec5 138 Pfam PF00258 Flavodoxin 6 130 2.1E-17 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CLM_3146 34d98e6be700a8849cd652f695a39ec5 138 TIGRFAM TIGR01753 flav_short: flavodoxin 4 138 5.5E-46 T 13-10-2018 IPR010087 Flavodoxin, short chain GO:0010181 CLM_3146 34d98e6be700a8849cd652f695a39ec5 138 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 CLM_3146 34d98e6be700a8849cd652f695a39ec5 138 Gene3D G3DSA:3.40.50.360 4 138 5.3E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3908 fc6b181b7e381743afe8f33eed5c65d9 187 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 16 177 6.0E-55 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CLM_3908 fc6b181b7e381743afe8f33eed5c65d9 187 Pfam PF05683 Fumarase C-terminus 5 178 5.7E-64 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CLM_3908 fc6b181b7e381743afe8f33eed5c65d9 187 Gene3D G3DSA:3.20.130.10 1 178 2.9E-74 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CLM_3908 fc6b181b7e381743afe8f33eed5c65d9 187 SUPERFAMILY SSF117457 5 177 3.79E-66 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 Gene3D G3DSA:3.20.80.10 133 274 4.3E-10 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 Gene3D G3DSA:1.10.1660.10 4 132 2.1E-22 T 13-10-2018 CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 SUPERFAMILY SSF55136 213 272 2.07E-8 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 SUPERFAMILY SSF46955 5 108 2.38E-21 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 Pfam PF06445 GyrI-like small molecule binding domain 204 272 1.0E-8 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 Pfam PF13411 MerR HTH family regulatory protein 6 74 3.4E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2332 201e88b8b5396e5c0569803df7f496ef 276 SMART SM00422 6 76 2.5E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_2595 684ea2dd5ccee115f8afac0ca8c26d48 100 SUPERFAMILY SSF54909 2 100 4.02E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CLM_2595 684ea2dd5ccee115f8afac0ca8c26d48 100 Pfam PF07876 Stress responsive A/B Barrel Domain 2 100 5.4E-27 T 13-10-2018 IPR013097 Stress responsive alpha-beta barrel CLM_2595 684ea2dd5ccee115f8afac0ca8c26d48 100 SMART SM00886 2 100 1.1E-37 T 13-10-2018 IPR013097 Stress responsive alpha-beta barrel CLM_2595 684ea2dd5ccee115f8afac0ca8c26d48 100 Gene3D G3DSA:3.30.70.100 1 100 4.5E-27 T 13-10-2018 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 461 35.449 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 225 378 2.7E-28 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 461 3.4E-129 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Gene3D G3DSA:3.30.1360.120 1 127 6.0E-47 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Gene3D G3DSA:1.20.120.430 128 461 4.7E-110 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 SUPERFAMILY SSF52540 81 378 1.52E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 127 1.7E-40 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Pfam PF01926 50S ribosome-binding GTPase 226 338 2.2E-28 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 SUPERFAMILY SSF116878 128 461 4.84E-49 T 13-10-2018 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Pfam PF12631 MnmE helical domain 130 458 6.0E-60 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 CLM_4148 1217a2248b0c427aac1c07e5df18549b 461 Gene3D G3DSA:3.40.50.300 224 389 4.7E-110 T 13-10-2018 CLM_2686 431af04ce462703540c2b64557ae35b0 512 SMART SM00857 4 151 3.0E-53 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CLM_2686 431af04ce462703540c2b64557ae35b0 512 Gene3D G3DSA:3.40.50.1390 1 160 1.5E-46 T 13-10-2018 CLM_2686 431af04ce462703540c2b64557ae35b0 512 Pfam PF00239 Resolvase, N terminal domain 4 151 7.7E-38 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CLM_2686 431af04ce462703540c2b64557ae35b0 512 Pfam PF13408 Recombinase zinc beta ribbon domain 308 365 2.5E-7 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain CLM_2686 431af04ce462703540c2b64557ae35b0 512 SUPERFAMILY SSF53041 3 151 8.5E-37 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CLM_2686 431af04ce462703540c2b64557ae35b0 512 Pfam PF07508 Recombinase 194 294 2.0E-7 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 CLM_3486 7cb4f6dce6ff0d7c966db9d1429e470e 174 SUPERFAMILY SSF53271 6 173 1.15E-55 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3486 7cb4f6dce6ff0d7c966db9d1429e470e 174 Pfam PF00156 Phosphoribosyl transferase domain 13 158 1.9E-28 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_3486 7cb4f6dce6ff0d7c966db9d1429e470e 174 Gene3D G3DSA:3.40.50.2020 1 174 1.2E-63 T 13-10-2018 CLM_3486 7cb4f6dce6ff0d7c966db9d1429e470e 174 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 8 170 8.7E-59 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 CLM_2130 0c6e80ff27f5cf07934e9619ee8fbe42 576 Gene3D G3DSA:2.30.310.10 1 167 5.6E-60 T 13-10-2018 CLM_2130 0c6e80ff27f5cf07934e9619ee8fbe42 576 Pfam PF05670 Domain of unknown function (DUF814) 460 547 2.5E-31 T 13-10-2018 IPR008532 Domain of unknown function DUF814 CLM_2130 0c6e80ff27f5cf07934e9619ee8fbe42 576 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 4 453 1.7E-152 T 13-10-2018 CLM_3976 4be9be41ae3353d281694189c8763962 366 Gene3D G3DSA:2.40.50.140 297 359 1.6E-5 T 13-10-2018 CLM_3976 4be9be41ae3353d281694189c8763962 366 SMART SM00670 169 276 1.2E-14 T 13-10-2018 IPR002716 PIN domain CLM_3976 4be9be41ae3353d281694189c8763962 366 SUPERFAMILY SSF88723 171 297 6.45E-26 T 13-10-2018 IPR029060 PIN-like domain superfamily CLM_3976 4be9be41ae3353d281694189c8763962 366 Pfam PF01850 PIN domain 172 279 2.0E-6 T 13-10-2018 IPR002716 PIN domain CLM_3976 4be9be41ae3353d281694189c8763962 366 Gene3D G3DSA:3.40.50.1010 164 296 5.2E-55 T 13-10-2018 CLM_3976 4be9be41ae3353d281694189c8763962 366 Pfam PF01938 TRAM domain 300 349 5.7E-6 T 13-10-2018 IPR002792 TRAM domain CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 Gene3D G3DSA:1.20.1580.10 543 581 4.5E-105 T 13-10-2018 CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 Gene3D G3DSA:3.40.50.300 461 745 4.5E-105 T 13-10-2018 CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 Gene3D G3DSA:1.10.8.280 147 257 6.9E-153 T 13-10-2018 CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 Pfam PF00005 ABC transporter 466 669 1.2E-14 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 SUPERFAMILY SSF52540 460 722 5.99E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 ProSitePatterns PS00211 ABC transporters family signature. 642 656 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 SMART SM00382 25 413 1.5 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 SMART SM00382 475 717 0.31 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 Gene3D G3DSA:3.40.50.300 8 436 6.9E-153 T 13-10-2018 CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 SUPERFAMILY SSF52540 10 426 3.25E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0851 c430120c9780a5591611aaa0e537f2c6 745 Gene3D G3DSA:1.20.1580.10 93 335 6.9E-153 T 13-10-2018 CLM_1984 2412bade57c8c840a24b454f2fdc71ee 103 Pfam PF01906 Putative heavy-metal-binding 1 101 1.1E-34 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CLM_1984 2412bade57c8c840a24b454f2fdc71ee 103 SUPERFAMILY SSF117782 1 103 1.44E-32 T 13-10-2018 IPR035439 UPF0145 domain superfamily CLM_1984 2412bade57c8c840a24b454f2fdc71ee 103 Gene3D G3DSA:3.30.110.70 1 103 6.7E-27 T 13-10-2018 CLM_1984 2412bade57c8c840a24b454f2fdc71ee 103 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 102 22.926 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 Pfam PF13086 AAA domain 266 385 1.3E-7 T 13-10-2018 CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 Gene3D G3DSA:3.40.960.10 1233 1332 1.4E-6 T 13-10-2018 CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 Gene3D G3DSA:3.40.50.300 1032 1230 1.2E-26 T 13-10-2018 CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 SUPERFAMILY SSF52540 125 409 1.01E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 Gene3D G3DSA:3.40.50.300 196 465 3.9E-20 T 13-10-2018 CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 Pfam PF13087 AAA domain 1011 1194 3.4E-17 T 13-10-2018 CLM_0144 f8703c121de7122bf8965e81f1d26e00 1350 SUPERFAMILY SSF52540 258 1206 5.4E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0269 51e1e7a1dfde33f214fb4b439e596a91 367 SUPERFAMILY SSF53822 41 290 6.06E-10 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CLM_0269 51e1e7a1dfde33f214fb4b439e596a91 367 Gene3D G3DSA:3.40.50.2300 43 315 5.2E-105 T 13-10-2018 CLM_0269 51e1e7a1dfde33f214fb4b439e596a91 367 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 44 352 7.3E-65 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CLM_0269 51e1e7a1dfde33f214fb4b439e596a91 367 Gene3D G3DSA:3.40.50.2300 143 349 5.2E-105 T 13-10-2018 CLM_2198 921ecf7d046342f9bb47e2832bb1b7ed 110 TIGRFAM TIGR04169 perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein 2 110 4.4E-64 T 13-10-2018 IPR026445 Alkylhydroperoxidase/carboxymuconolactone decarboxylase family CLM_2198 921ecf7d046342f9bb47e2832bb1b7ed 110 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 38 88 1.4E-10 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CLM_2198 921ecf7d046342f9bb47e2832bb1b7ed 110 Gene3D G3DSA:1.20.1290.10 7 109 5.8E-26 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CLM_2198 921ecf7d046342f9bb47e2832bb1b7ed 110 Pfam PF02627 Carboxymuconolactone decarboxylase family 21 99 1.3E-18 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CLM_2198 921ecf7d046342f9bb47e2832bb1b7ed 110 SUPERFAMILY SSF69118 13 101 2.22E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CLM_0466 0718f630c8ce6067c5e2a901a2c62b68 144 Gene3D G3DSA:3.30.1490.190 85 137 1.2E-6 T 13-10-2018 CLM_0466 0718f630c8ce6067c5e2a901a2c62b68 144 Gene3D G3DSA:1.10.10.10 2 81 4.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0466 0718f630c8ce6067c5e2a901a2c62b68 144 Pfam PF01475 Ferric uptake regulator family 9 126 4.7E-19 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CLM_0466 0718f630c8ce6067c5e2a901a2c62b68 144 SUPERFAMILY SSF46785 4 132 2.55E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1195 d3e3316b0aad76dee9e0ec96603b4a07 602 Gene3D G3DSA:3.30.70.100 2 70 5.5E-16 T 13-10-2018 CLM_1195 d3e3316b0aad76dee9e0ec96603b4a07 602 SUPERFAMILY SSF55008 5 70 6.28E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_1195 d3e3316b0aad76dee9e0ec96603b4a07 602 Gene3D G3DSA:2.60.40.420 334 433 2.9E-28 T 13-10-2018 IPR008972 Cupredoxin CLM_1195 d3e3316b0aad76dee9e0ec96603b4a07 602 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 111 303 1.1E-51 T 13-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain CLM_1195 d3e3316b0aad76dee9e0ec96603b4a07 602 Pfam PF00403 Heavy-metal-associated domain 8 67 2.8E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_1195 d3e3316b0aad76dee9e0ec96603b4a07 602 ProSitePatterns PS01047 Heavy-metal-associated domain. 10 39 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.2E-35 T 13-10-2018 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 1.2E-35 T 13-10-2018 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.2E-35 T 13-10-2018 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 1.2E-35 T 13-10-2018 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.2E-35 T 13-10-2018 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 298 2.6E-50 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 5 309 5.2E-113 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 134 154 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 Gene3D G3DSA:3.50.50.60 8 308 6.5E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 54 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 105 113 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 194 210 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 6.9E-71 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 Gene3D G3DSA:3.50.50.60 121 249 6.5E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1418 21df6b16acc06eadcc1cd674803d89bd 313 SUPERFAMILY SSF51905 1 307 7.78E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2363 4ef5cfa97f92c826e62b870a2f29da9c 94 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 75 1.6E-16 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CLM_2363 4ef5cfa97f92c826e62b870a2f29da9c 94 SUPERFAMILY SSF52794 1 87 4.45E-22 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CLM_2363 4ef5cfa97f92c826e62b870a2f29da9c 94 Gene3D G3DSA:3.40.50.2300 1 86 4.0E-22 T 13-10-2018 CLM_0969 2c236e48009243d1156d76a8b0c9259f 117 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 89 1.2E-30 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_0969 2c236e48009243d1156d76a8b0c9259f 117 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 116 4.8E-37 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_0969 2c236e48009243d1156d76a8b0c9259f 117 Gene3D G3DSA:3.30.479.10 73 117 9.8E-11 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 CLM_0969 2c236e48009243d1156d76a8b0c9259f 117 SUPERFAMILY SSF55620 1 115 1.22E-38 T 13-10-2018 CLM_0969 2c236e48009243d1156d76a8b0c9259f 117 Gene3D G3DSA:3.30.479.10 1 72 1.7E-25 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 CLM_0969 2c236e48009243d1156d76a8b0c9259f 117 PIRSF PIRSF006113 1 117 2.4E-35 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_3245 5f3fdd9c88a897b6b5a77de58cc30576 258 Gene3D G3DSA:1.10.10.60 146 249 1.9E-15 T 13-10-2018 CLM_3245 5f3fdd9c88a897b6b5a77de58cc30576 258 Pfam PF12833 Helix-turn-helix domain 172 245 2.6E-13 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_3245 5f3fdd9c88a897b6b5a77de58cc30576 258 SMART SM00342 166 248 1.6E-9 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2231 67fb1785a37928a1969d41a9b86aca75 302 Pfam PF00892 EamA-like transporter family 154 296 5.0E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_2231 67fb1785a37928a1969d41a9b86aca75 302 Pfam PF00892 EamA-like transporter family 8 141 1.4E-25 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_2231 67fb1785a37928a1969d41a9b86aca75 302 SUPERFAMILY SSF103481 214 300 1.16E-14 T 13-10-2018 CLM_2231 67fb1785a37928a1969d41a9b86aca75 302 SUPERFAMILY SSF103481 44 143 2.62E-12 T 13-10-2018 CLM_2709 addc5d1abd4acc73d17840aabc43a1ae 320 Pfam PF02272 DHHA1 domain 188 315 4.6E-13 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CLM_2709 addc5d1abd4acc73d17840aabc43a1ae 320 Gene3D G3DSA:3.90.1640.10 1 203 2.2E-58 T 13-10-2018 CLM_2709 addc5d1abd4acc73d17840aabc43a1ae 320 Gene3D G3DSA:3.10.310.30 204 319 2.9E-29 T 13-10-2018 CLM_2709 addc5d1abd4acc73d17840aabc43a1ae 320 Pfam PF01368 DHH family 16 155 1.2E-12 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_2709 addc5d1abd4acc73d17840aabc43a1ae 320 SUPERFAMILY SSF64182 15 317 6.93E-65 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CLM_3130 e7d127a9b006c523fc9706f44eaba049 593 Gene3D G3DSA:3.10.310.30 331 453 9.0E-32 T 13-10-2018 CLM_3130 e7d127a9b006c523fc9706f44eaba049 593 Pfam PF01368 DHH family 78 218 6.6E-12 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_3130 e7d127a9b006c523fc9706f44eaba049 593 Gene3D G3DSA:3.90.1640.30 53 330 4.9E-96 T 13-10-2018 CLM_3130 e7d127a9b006c523fc9706f44eaba049 593 SUPERFAMILY SSF64182 53 457 5.23E-113 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CLM_3130 e7d127a9b006c523fc9706f44eaba049 593 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 546 8.1E-161 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 CLM_3130 e7d127a9b006c523fc9706f44eaba049 593 Pfam PF02272 DHHA1 domain 321 448 1.8E-18 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CLM_0257 c3035c4216f1253e5a0f40a7ec9b4f3b 321 Pfam PF13484 4Fe-4S double cluster binding domain 175 234 1.0E-11 T 13-10-2018 CLM_0257 c3035c4216f1253e5a0f40a7ec9b4f3b 321 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 176 187 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0257 c3035c4216f1253e5a0f40a7ec9b4f3b 321 SUPERFAMILY SSF46548 122 237 2.98E-11 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0257 c3035c4216f1253e5a0f40a7ec9b4f3b 321 Pfam PF08331 Domain of unknown function (DUF1730) 54 123 1.6E-13 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 CLM_0257 c3035c4216f1253e5a0f40a7ec9b4f3b 321 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 7 301 4.4E-76 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CLM_3816 fdaed3f1b1f87adb5a499c70b39ecd78 284 Gene3D G3DSA:3.90.25.10 142 264 1.2E-48 T 13-10-2018 CLM_3816 fdaed3f1b1f87adb5a499c70b39ecd78 284 Gene3D G3DSA:3.40.50.720 4 265 1.2E-48 T 13-10-2018 CLM_3816 fdaed3f1b1f87adb5a499c70b39ecd78 284 Pfam PF05368 NmrA-like family 4 223 4.3E-17 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 CLM_3816 fdaed3f1b1f87adb5a499c70b39ecd78 284 SUPERFAMILY SSF51735 4 250 1.27E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2408 1bf6ac55a1662c87f7b97e1af151aba6 462 Pfam PF02447 GntP family permease 11 461 1.1E-132 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CLM_2408 1bf6ac55a1662c87f7b97e1af151aba6 462 PIRSF PIRSF002746 6 462 3.9E-147 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CLM_2408 1bf6ac55a1662c87f7b97e1af151aba6 462 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 12 462 1.1E-108 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CLM_1171 a5410569a26679e894d67426b97493fd 174 SMART SM00347 57 160 1.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1171 a5410569a26679e894d67426b97493fd 174 Gene3D G3DSA:1.10.10.10 3 174 5.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1171 a5410569a26679e894d67426b97493fd 174 SUPERFAMILY SSF46785 62 172 1.64E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1171 a5410569a26679e894d67426b97493fd 174 Pfam PF01047 MarR family 64 122 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 SUPERFAMILY SSF46894 133 235 1.62E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 SUPERFAMILY SSF52172 4 136 3.7E-38 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 Pfam PF00072 Response regulator receiver domain 11 120 1.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 SMART SM00862 158 234 5.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 SMART SM00448 9 120 2.9E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 234 1.1E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 Gene3D G3DSA:3.40.50.2300 6 135 8.3E-34 T 13-10-2018 CLM_1116 f9a8e2f7c3980c5bf43c29f4474f3966 240 Gene3D G3DSA:1.10.10.10 136 240 3.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0886 0c741650affbfdbba744549ac3f3f12a 212 Pfam PF00149 Calcineurin-like phosphoesterase 2 132 1.7E-6 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CLM_0886 0c741650affbfdbba744549ac3f3f12a 212 SUPERFAMILY SSF56300 2 148 3.8E-15 T 13-10-2018 CLM_0886 0c741650affbfdbba744549ac3f3f12a 212 Gene3D G3DSA:3.60.21.10 1 165 5.2E-10 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_2137 e84844894c247ee889f6a7a71edb7d18 524 Gene3D G3DSA:3.40.50.11970 46 175 2.3E-13 T 13-10-2018 CLM_2137 e84844894c247ee889f6a7a71edb7d18 524 Pfam PF03415 Clostripain family 60 508 6.4E-96 T 13-10-2018 IPR005077 Peptidase C11, clostripain CLM_2137 e84844894c247ee889f6a7a71edb7d18 524 TIGRFAM TIGR02806 clostrip: clostripain 54 524 9.5E-260 T 13-10-2018 IPR014173 Peptidase C11, Clostripain Clostridium species CLM_1913 a59c15c104b3fe3b94035ef58a46ef88 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 324 4.2E-44 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1913 a59c15c104b3fe3b94035ef58a46ef88 324 Gene3D G3DSA:1.10.3720.10 91 321 5.1E-22 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1913 a59c15c104b3fe3b94035ef58a46ef88 324 SUPERFAMILY SSF161098 99 312 1.7E-20 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3315 3b3c86dbb9bf5b58e74a79b30ee1c200 123 Gene3D G3DSA:1.10.10.10 10 122 7.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3315 3b3c86dbb9bf5b58e74a79b30ee1c200 123 SUPERFAMILY SSF46785 6 80 4.79E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3315 3b3c86dbb9bf5b58e74a79b30ee1c200 123 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 3.6E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3315 3b3c86dbb9bf5b58e74a79b30ee1c200 123 SMART SM00345 17 76 7.1E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_2703 6f58e9e993a1019086b559dcfbf7076c 90 SUPERFAMILY SSF50346 6 80 1.88E-8 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CLM_2703 6f58e9e993a1019086b559dcfbf7076c 90 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 7 80 2.2E-28 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH CLM_2703 6f58e9e993a1019086b559dcfbf7076c 90 Pfam PF05239 PRC-barrel domain 4 84 4.2E-10 T 13-10-2018 IPR027275 PRC-barrel domain CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 Pfam PF07664 Ferrous iron transport protein B C terminus 382 434 3.1E-21 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 Pfam PF02421 Ferrous iron transport protein B 3 153 1.0E-60 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 SUPERFAMILY SSF52540 1 157 1.33E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 Gene3D G3DSA:3.40.50.300 3 192 1.5E-43 T 13-10-2018 CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 Pfam PF07670 Nucleoside recognition 278 369 6.6E-15 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 Pfam PF07670 Nucleoside recognition 439 559 7.1E-34 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_1236 0866f5d8eefbc8195d5f49c0d6c10f24 587 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 196 555 1.5E-123 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 CLM_0774 2191f64d6815b3738d512efadeb7f6db 251 Pfam PF01814 Hemerythrin HHE cation binding domain 84 220 7.0E-21 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CLM_0774 2191f64d6815b3738d512efadeb7f6db 251 Pfam PF04282 Family of unknown function (DUF438) 9 74 9.7E-21 T 13-10-2018 IPR007380 Domain of unknown function DUF438 CLM_0774 2191f64d6815b3738d512efadeb7f6db 251 Gene3D G3DSA:1.20.120.520 76 251 4.0E-42 T 13-10-2018 CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 SMART SM00287 193 253 2.1E-6 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 Gene3D G3DSA:2.30.30.40 191 253 3.3E-15 T 13-10-2018 CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 SUPERFAMILY SSF53187 1 169 3.45E-43 T 13-10-2018 CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 Gene3D G3DSA:3.40.630.40 1 173 1.7E-57 T 13-10-2018 CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 167 3.2E-32 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 SMART SM00646 65 168 3.0E-19 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_2915 76af9dbfc9ae6cb2d0a50dc583c01492 253 Pfam PF08239 Bacterial SH3 domain 201 252 4.4E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2229 f402629f8c3fd7e42a3d3ee4ec5ebcb2 265 Pfam PF00188 Cysteine-rich secretory protein family 145 260 6.5E-24 T 13-10-2018 IPR014044 CAP domain CLM_2229 f402629f8c3fd7e42a3d3ee4ec5ebcb2 265 Gene3D G3DSA:3.40.33.10 8 262 7.1E-66 T 13-10-2018 IPR035940 CAP superfamily CLM_2229 f402629f8c3fd7e42a3d3ee4ec5ebcb2 265 SUPERFAMILY SSF55797 138 264 7.06E-30 T 13-10-2018 IPR035940 CAP superfamily CLM_2229 f402629f8c3fd7e42a3d3ee4ec5ebcb2 265 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 137 262 2.5E-63 T 13-10-2018 IPR014258 CAP domain, YkwD-like CLM_1067 f575c8a279e0dc7de3bdc93010368dea 215 SUPERFAMILY SSF51735 7 102 1.97E-10 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1067 f575c8a279e0dc7de3bdc93010368dea 215 Pfam PF13241 Putative NAD(P)-binding 8 109 3.1E-14 T 13-10-2018 CLM_1067 f575c8a279e0dc7de3bdc93010368dea 215 Gene3D G3DSA:3.40.50.720 7 130 3.7E-17 T 13-10-2018 CLM_1507 47bbc3f5ff0e6ae47760ff858666fdf3 147 Pfam PF13247 4Fe-4S dicluster domain 57 145 1.6E-20 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_1507 47bbc3f5ff0e6ae47760ff858666fdf3 147 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 94 105 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1507 47bbc3f5ff0e6ae47760ff858666fdf3 147 Gene3D G3DSA:3.30.70.20 37 147 2.8E-28 T 13-10-2018 CLM_1507 47bbc3f5ff0e6ae47760ff858666fdf3 147 SUPERFAMILY SSF54862 4 143 3.4E-35 T 13-10-2018 CLM_1545 2b2e230adf56b722cc141ae981ece5ff 157 Gene3D G3DSA:3.30.1490.190 90 152 5.9E-10 T 13-10-2018 CLM_1545 2b2e230adf56b722cc141ae981ece5ff 157 SUPERFAMILY SSF46785 8 141 1.35E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1545 2b2e230adf56b722cc141ae981ece5ff 157 Gene3D G3DSA:1.10.10.10 1 83 1.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1545 2b2e230adf56b722cc141ae981ece5ff 157 Pfam PF01475 Ferric uptake regulator family 14 129 1.0E-23 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CLM_3279 0dba8006cbf34d285b65d305ea7a765d 442 SUPERFAMILY SSF51338 1 439 1.94E-35 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3279 0dba8006cbf34d285b65d305ea7a765d 442 SUPERFAMILY SSF51556 59 348 2.07E-74 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_3279 0dba8006cbf34d285b65d305ea7a765d 442 TIGRFAM TIGR03314 Se_ssnA: putative selenium metabolism protein SsnA 2 442 2.4E-229 T 13-10-2018 IPR017700 Putative aminohydrolase SsnA CLM_3279 0dba8006cbf34d285b65d305ea7a765d 442 Gene3D G3DSA:2.30.40.10 3 430 8.1E-116 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CLM_3279 0dba8006cbf34d285b65d305ea7a765d 442 Pfam PF01979 Amidohydrolase family 56 412 1.0E-44 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CLM_3279 0dba8006cbf34d285b65d305ea7a765d 442 Gene3D G3DSA:3.20.20.140 60 355 8.1E-116 T 13-10-2018 CLM_4119 17d6195dd4123510bb519102297a863e 249 Pfam PF01643 Acyl-ACP thioesterase 6 248 4.3E-67 T 13-10-2018 IPR002864 Acyl-ACP thioesterase GO:0006633|GO:0016790 CLM_4119 17d6195dd4123510bb519102297a863e 249 SUPERFAMILY SSF54637 145 248 8.48E-25 T 13-10-2018 IPR029069 HotDog domain superfamily CLM_4119 17d6195dd4123510bb519102297a863e 249 SUPERFAMILY SSF54637 3 140 4.22E-42 T 13-10-2018 IPR029069 HotDog domain superfamily CLM_4119 17d6195dd4123510bb519102297a863e 249 Gene3D G3DSA:3.10.129.10 6 249 4.7E-71 T 13-10-2018 CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 SUPERFAMILY SSF53137 17 132 3.66E-49 T 13-10-2018 CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 Pfam PF00411 Ribosomal protein S11 22 131 2.5E-49 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 ProSitePatterns PS00054 Ribosomal protein S11 signature. 100 122 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 6 132 34.015 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 PIRSF PIRSF002131 2 132 1.1E-52 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 Gene3D G3DSA:3.30.420.80 5 132 2.0E-53 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3921 94af592bf8a8ca782b752ca7dbfac59b 132 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 13 129 1.6E-58 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_4075 5f8446097600c30e8bafcfa48f624b44 458 TIGRFAM TIGR03955 rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG 2 457 3.1E-195 T 13-10-2018 IPR024007 [FeFe]-hydrogenase maturation HydG, radical SAM CLM_4075 5f8446097600c30e8bafcfa48f624b44 458 Gene3D G3DSA:3.20.20.70 6 380 3.9E-110 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4075 5f8446097600c30e8bafcfa48f624b44 458 Pfam PF04055 Radical SAM superfamily 80 228 1.7E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_4075 5f8446097600c30e8bafcfa48f624b44 458 SUPERFAMILY SSF102114 34 338 1.83E-44 T 13-10-2018 CLM_4075 5f8446097600c30e8bafcfa48f624b44 458 SMART SM00876 262 369 7.8E-32 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_4075 5f8446097600c30e8bafcfa48f624b44 458 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 262 366 9.2E-22 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 443 4.7E-132 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 94 109 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 PRINTS PR00175 Sodium/alanine symporter signature 412 432 4.7E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 PRINTS PR00175 Sodium/alanine symporter signature 94 116 4.7E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 PRINTS PR00175 Sodium/alanine symporter signature 306 324 4.7E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 PRINTS PR00175 Sodium/alanine symporter signature 183 201 4.7E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 PRINTS PR00175 Sodium/alanine symporter signature 211 230 4.7E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 PRINTS PR00175 Sodium/alanine symporter signature 353 375 4.7E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 Gene3D G3DSA:1.20.1740.10 62 452 6.5E-8 T 13-10-2018 CLM_1259 90eb85a0d32b15835a370ede9046c35b 458 Pfam PF01235 Sodium:alanine symporter family 55 446 9.8E-122 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1937 436525c14c2f445dbf0b3f097809b318 278 PIRSF PIRSF012524 1 278 3.5E-77 T 13-10-2018 IPR014464 Conserved virulence factor B CLM_1937 436525c14c2f445dbf0b3f097809b318 278 SUPERFAMILY SSF50249 143 214 2.36E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1937 436525c14c2f445dbf0b3f097809b318 278 Gene3D G3DSA:2.40.50.140 147 215 8.6E-19 T 13-10-2018 CLM_1937 436525c14c2f445dbf0b3f097809b318 278 Pfam PF13509 S1 domain 73 132 5.5E-10 T 13-10-2018 IPR039566 Conserved virulence factor B, S1 domain CLM_1937 436525c14c2f445dbf0b3f097809b318 278 Pfam PF13509 S1 domain 4 66 2.5E-22 T 13-10-2018 IPR039566 Conserved virulence factor B, S1 domain CLM_1937 436525c14c2f445dbf0b3f097809b318 278 Pfam PF00575 S1 RNA binding domain 145 208 5.7E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_1937 436525c14c2f445dbf0b3f097809b318 278 Gene3D G3DSA:1.10.10.10 216 278 1.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1937 436525c14c2f445dbf0b3f097809b318 278 SMART SM00316 145 208 5.4E-12 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1937 436525c14c2f445dbf0b3f097809b318 278 SMART SM00316 3 67 4.5 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1937 436525c14c2f445dbf0b3f097809b318 278 SMART SM00316 72 133 22.0 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Pfam PF02493 MORN repeat 40 61 6.9E-6 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Pfam PF02493 MORN repeat 155 175 2.8E-6 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Pfam PF02493 MORN repeat 63 83 1.1E-6 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Pfam PF02493 MORN repeat 132 150 5.6E-5 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Pfam PF02493 MORN repeat 109 131 1.7E-6 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Pfam PF02493 MORN repeat 86 106 1.3E-8 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SUPERFAMILY SSF82185 85 185 7.85E-30 T 13-10-2018 CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Gene3D G3DSA:2.20.110.10 114 189 1.3E-17 T 13-10-2018 CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 Gene3D G3DSA:2.20.110.10 41 113 6.7E-18 T 13-10-2018 CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SMART SM00698 61 82 0.0014 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SMART SM00698 84 105 2.9E-6 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SMART SM00698 107 128 0.024 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SMART SM00698 130 151 0.022 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SMART SM00698 153 174 3.7E-6 T 13-10-2018 IPR003409 MORN motif CLM_1738 f7a3c22ba03bde7a4614fa94a8a19819 189 SMART SM00698 38 59 9.1E-4 T 13-10-2018 IPR003409 MORN motif CLM_0341 0696954e268fea567fbacc4c7d312880 184 Pfam PF06210 Protein of unknown function (DUF1003) 69 169 9.8E-37 T 13-10-2018 IPR010406 Protein of unknown function DUF1003 CLM_2197 8b5f0c41b1bdc0a270c4c0af5f630ac3 142 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 15 142 9.7E-20 T 13-10-2018 IPR010181 CGCAxxGCC motif CLM_2197 8b5f0c41b1bdc0a270c4c0af5f630ac3 142 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 14 140 1.7E-28 T 13-10-2018 IPR010181 CGCAxxGCC motif CLM_3515 07967e95668c483511077e7b9d91c566 621 SUPERFAMILY SSF53335 113 335 4.32E-16 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3515 07967e95668c483511077e7b9d91c566 621 Gene3D G3DSA:3.90.25.30 458 558 6.1E-125 T 13-10-2018 CLM_3515 07967e95668c483511077e7b9d91c566 621 Gene3D G3DSA:3.40.50.720 151 277 8.3E-38 T 13-10-2018 CLM_3515 07967e95668c483511077e7b9d91c566 621 Pfam PF02719 Polysaccharide biosynthesis protein 296 578 9.9E-126 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CLM_3515 07967e95668c483511077e7b9d91c566 621 Gene3D G3DSA:3.40.50.720 293 580 6.1E-125 T 13-10-2018 CLM_3515 07967e95668c483511077e7b9d91c566 621 SUPERFAMILY SSF51735 294 557 8.82E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3515 07967e95668c483511077e7b9d91c566 621 Pfam PF13727 CoA-binding domain 63 248 8.4E-14 T 13-10-2018 CLM_1175 0dd6ff9d5b82c72c810e10a8de1df1bb 185 Gene3D G3DSA:3.40.50.360 53 184 6.3E-22 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1175 0dd6ff9d5b82c72c810e10a8de1df1bb 185 Pfam PF12724 Flavodoxin domain 61 156 4.4E-10 T 13-10-2018 IPR026816 Flavodoxin domain CLM_1175 0dd6ff9d5b82c72c810e10a8de1df1bb 185 SUPERFAMILY SSF52218 52 183 1.76E-20 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0414 795cc80519e271ad0e91ba9cd8978971 95 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 2 90 2.1E-17 T 13-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 CLM_0414 795cc80519e271ad0e91ba9cd8978971 95 PIRSF PIRSF020408 1 95 7.0E-33 T 13-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 SUPERFAMILY SSF53850 89 293 2.39E-25 T 13-10-2018 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 Gene3D G3DSA:3.40.190.10 92 286 8.2E-24 T 13-10-2018 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 SUPERFAMILY SSF46785 1 86 4.45E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1819 5159c4d280611bea45ab43037e720fd6 296 Gene3D G3DSA:3.40.190.10 163 264 8.2E-24 T 13-10-2018 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 Gene3D G3DSA:1.10.10.10 1 90 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1819 5159c4d280611bea45ab43037e720fd6 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.7E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CLM_1819 5159c4d280611bea45ab43037e720fd6 296 Pfam PF03466 LysR substrate binding domain 91 290 2.8E-25 T 13-10-2018 IPR005119 LysR, substrate-binding CLM_1769 3dad4c0eff9b3d3fd861eadd6ae029b3 276 PIRSF PIRSF034452 1 276 1.1E-149 T 13-10-2018 IPR009215 TIM-barrel domain, IGPS-like CLM_1769 3dad4c0eff9b3d3fd861eadd6ae029b3 276 SUPERFAMILY SSF51621 3 197 4.71E-86 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CLM_1769 3dad4c0eff9b3d3fd861eadd6ae029b3 276 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 8 274 4.7E-134 T 13-10-2018 IPR009215 TIM-barrel domain, IGPS-like CLM_1769 3dad4c0eff9b3d3fd861eadd6ae029b3 276 Gene3D G3DSA:1.20.5.460 253 276 5.3E-6 T 13-10-2018 CLM_1769 3dad4c0eff9b3d3fd861eadd6ae029b3 276 Gene3D G3DSA:3.20.20.70 1 252 5.9E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2895 e89ebdcb26652257702241d879aa943d 170 SUPERFAMILY SSF55729 29 166 8.81E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_2895 e89ebdcb26652257702241d879aa943d 170 Gene3D G3DSA:3.40.630.30 11 169 1.7E-19 T 13-10-2018 CLM_2895 e89ebdcb26652257702241d879aa943d 170 Pfam PF13673 Acetyltransferase (GNAT) domain 56 146 7.5E-10 T 13-10-2018 IPR000182 GNAT domain CLM_1313 f343a008b20d01bccbb1456eba4b0c08 335 SUPERFAMILY SSF53822 46 294 3.26E-13 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CLM_1313 f343a008b20d01bccbb1456eba4b0c08 335 Gene3D G3DSA:3.40.50.2300 56 302 4.1E-90 T 13-10-2018 CLM_1313 f343a008b20d01bccbb1456eba4b0c08 335 Gene3D G3DSA:3.40.50.2300 153 323 4.1E-90 T 13-10-2018 CLM_1313 f343a008b20d01bccbb1456eba4b0c08 335 Pfam PF04392 ABC transporter substrate binding protein 40 330 5.8E-88 T 13-10-2018 IPR007487 ABC transporter, substrate-binding protein CLM_0204 fd35a238c255645861b0f05edd5720aa 358 Pfam PF08486 Stage II sporulation protein 81 185 7.8E-28 T 13-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal CLM_0204 fd35a238c255645861b0f05edd5720aa 358 TIGRFAM TIGR02870 spore_II_D: stage II sporulation protein D 14 352 8.0E-114 T 13-10-2018 IPR014225 Sporulation stage II, protein D firmicutes CLM_0204 fd35a238c255645861b0f05edd5720aa 358 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 82 351 3.7E-78 T 13-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 CLM_1054 95ff657f43d95a28b6f5f8efbfcf417a 181 SUPERFAMILY SSF55729 11 181 2.66E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1054 95ff657f43d95a28b6f5f8efbfcf417a 181 Pfam PF00583 Acetyltransferase (GNAT) family 56 154 5.6E-17 T 13-10-2018 IPR000182 GNAT domain CLM_1054 95ff657f43d95a28b6f5f8efbfcf417a 181 Gene3D G3DSA:3.40.630.30 13 181 2.6E-42 T 13-10-2018 CLM_1097 bafd05fa152fe6fd431b6c3fe92d0a88 238 Gene3D G3DSA:3.30.950.10 144 238 3.0E-10 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CLM_1097 bafd05fa152fe6fd431b6c3fe92d0a88 238 Gene3D G3DSA:3.40.1010.10 19 143 3.7E-34 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CLM_1097 bafd05fa152fe6fd431b6c3fe92d0a88 238 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 21 222 4.6E-43 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CLM_1097 bafd05fa152fe6fd431b6c3fe92d0a88 238 SUPERFAMILY SSF53790 20 236 2.88E-45 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CLM_1097 bafd05fa152fe6fd431b6c3fe92d0a88 238 PIRSF PIRSF036427 18 238 4.2E-63 T 13-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 CLM_1097 bafd05fa152fe6fd431b6c3fe92d0a88 238 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 20 236 7.7E-54 T 13-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 CLM_3342 b8d8dac617b0e2a4ebe9b1e0be1a9e20 232 SUPERFAMILY SSF48317 42 231 1.31E-22 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLM_3342 b8d8dac617b0e2a4ebe9b1e0be1a9e20 232 Gene3D G3DSA:1.10.3830.10 1 117 2.0E-36 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CLM_3342 b8d8dac617b0e2a4ebe9b1e0be1a9e20 232 Pfam PF01569 PAP2 superfamily 158 230 4.2E-11 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLM_3342 b8d8dac617b0e2a4ebe9b1e0be1a9e20 232 SMART SM00014 133 228 1.5E-5 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLM_3342 b8d8dac617b0e2a4ebe9b1e0be1a9e20 232 Pfam PF01219 Prokaryotic diacylglycerol kinase 11 112 1.0E-32 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CLM_3342 b8d8dac617b0e2a4ebe9b1e0be1a9e20 232 Gene3D G3DSA:1.20.144.10 154 232 1.5E-12 T 13-10-2018 CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF11738 Protein of unknown function (DUF3298) 732 807 4.1E-18 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Gene3D G3DSA:1.25.40.10 138 262 4.0E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1154 f440f4f30fe5866084b0e838628b5975 824 SUPERFAMILY SSF48452 183 232 2.18E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 416 447 0.062 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 452 482 1.4E-8 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 342 368 0.23 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 381 412 1.8E-8 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 271 306 2.7E-7 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 490 509 1.9E-4 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Pfam PF14903 WG containing repeat 306 334 0.0021 T 13-10-2018 IPR032774 WG containing repeat CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Gene3D G3DSA:3.30.565.40 622 728 4.1E-9 T 13-10-2018 CLM_1154 f440f4f30fe5866084b0e838628b5975 824 Gene3D G3DSA:3.90.640.20 730 820 1.4E-22 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Pfam PF01345 Domain of unknown function DUF11 363 457 3.9E-10 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Pfam PF01345 Domain of unknown function DUF11 909 994 2.3E-12 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Pfam PF01345 Domain of unknown function DUF11 497 579 1.5E-10 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Pfam PF01345 Domain of unknown function DUF11 746 838 4.2E-11 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Pfam PF01345 Domain of unknown function DUF11 623 714 1.0E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 748 799 6.9E-11 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 623 669 1.1E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 363 415 7.5E-15 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 911 951 9.4E-14 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 497 545 2.3E-12 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Gene3D G3DSA:2.60.40.740 360 471 1.2E-5 T 13-10-2018 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 SUPERFAMILY SSF117074 2 76 7.72E-13 T 13-10-2018 CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Pfam PF17210 SdrD B-like domain 3 67 8.0E-9 T 13-10-2018 IPR033764 SD-repeat containing protein, B domain CLM_1213 fcee4abb41328ded4f7df56d644549af 1053 Gene3D G3DSA:2.60.40.10 1 98 1.7E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_0764 eccaaaa8737b7b8356e0809ca6f6282f 906 SUPERFAMILY SSF51556 518 850 7.48E-20 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_0764 eccaaaa8737b7b8356e0809ca6f6282f 906 Gene3D G3DSA:3.20.20.140 368 644 7.7E-16 T 13-10-2018 CLM_0764 eccaaaa8737b7b8356e0809ca6f6282f 906 Gene3D G3DSA:3.20.20.140 685 883 4.6E-18 T 13-10-2018 CLM_3896 505bd9dafc8aa89024d3de0374d5bd90 426 Pfam PF07949 YbbR-like protein 136 220 4.8E-11 T 13-10-2018 IPR012505 YbbR-like CLM_3896 505bd9dafc8aa89024d3de0374d5bd90 426 Pfam PF07949 YbbR-like protein 228 309 3.8E-5 T 13-10-2018 IPR012505 YbbR-like CLM_3896 505bd9dafc8aa89024d3de0374d5bd90 426 Gene3D G3DSA:2.170.120.40 225 311 1.4E-7 T 13-10-2018 CLM_3896 505bd9dafc8aa89024d3de0374d5bd90 426 Gene3D G3DSA:2.170.120.40 138 223 1.4E-13 T 13-10-2018 CLM_3896 505bd9dafc8aa89024d3de0374d5bd90 426 Gene3D G3DSA:2.170.120.30 326 426 2.1E-11 T 13-10-2018 CLM_3896 505bd9dafc8aa89024d3de0374d5bd90 426 Gene3D G3DSA:2.170.120.30 33 137 2.1E-17 T 13-10-2018 CLM_0913 fe6a9b800a87115045bf79240c3c7af6 182 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 16 92 6.1E-5 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CLM_0913 fe6a9b800a87115045bf79240c3c7af6 182 SUPERFAMILY SSF53254 15 152 2.95E-17 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CLM_0913 fe6a9b800a87115045bf79240c3c7af6 182 Gene3D G3DSA:3.40.50.1240 11 141 1.6E-14 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CLM_0262 4eca0bbcd2efb7625b0b993e4b3cb1e8 327 Pfam PF09752 Abhydrolase domain containing 18 262 321 9.2E-5 T 13-10-2018 IPR019149 Abhydrolase domain containing 18 CLM_0262 4eca0bbcd2efb7625b0b993e4b3cb1e8 327 Gene3D G3DSA:3.40.50.1820 70 327 4.2E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0262 4eca0bbcd2efb7625b0b993e4b3cb1e8 327 Pfam PF12146 Serine aminopeptidase, S33 98 188 1.8E-6 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CLM_0262 4eca0bbcd2efb7625b0b993e4b3cb1e8 327 SUPERFAMILY SSF53474 39 325 1.74E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_3814 54e5a8eeebe2f5a012ae0fa2f415f677 91 Gene3D G3DSA:1.10.10.60 48 90 7.9E-6 T 13-10-2018 CLM_3814 54e5a8eeebe2f5a012ae0fa2f415f677 91 SUPERFAMILY SSF46689 3 88 7.88E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3814 54e5a8eeebe2f5a012ae0fa2f415f677 91 Pfam PF08765 Mor transcription activator family 10 89 2.2E-8 T 13-10-2018 IPR014875 Mor transcription activator CLM_1924 a56e13903e6b7eaae0cd6728717afc8e 459 Pfam PF00854 POT family 241 423 2.4E-29 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_1924 a56e13903e6b7eaae0cd6728717afc8e 459 Pfam PF00854 POT family 86 209 4.0E-12 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_1924 a56e13903e6b7eaae0cd6728717afc8e 459 SUPERFAMILY SSF103473 8 452 5.89E-40 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1924 a56e13903e6b7eaae0cd6728717afc8e 459 Gene3D G3DSA:1.20.1250.20 235 459 1.3E-50 T 13-10-2018 CLM_1924 a56e13903e6b7eaae0cd6728717afc8e 459 Gene3D G3DSA:1.20.1250.20 1 234 2.4E-55 T 13-10-2018 CLM_1924 a56e13903e6b7eaae0cd6728717afc8e 459 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 8 172 2.3E-38 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 SUPERFAMILY SSF47203 225 376 6.77E-62 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 Gene3D G3DSA:1.10.540.10 1 118 1.6E-37 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 2.7E-27 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 Gene3D G3DSA:1.20.140.10 233 377 1.9E-59 T 13-10-2018 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 3.3E-33 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 PIRSF PIRSF016578 4 376 1.4E-30 T 13-10-2018 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.1E-53 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 Gene3D G3DSA:2.40.110.10 119 232 7.5E-43 T 13-10-2018 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 SUPERFAMILY SSF56645 2 238 5.76E-85 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CLM_2397 49c23afd2c7c8c8e5a4bb4bfc361c567 377 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CLM_0283 36987e280d150c90820aa435117f7a08 252 Gene3D G3DSA:3.40.1210.10 1 251 8.7E-85 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CLM_0283 36987e280d150c90820aa435117f7a08 252 Pfam PF01975 Survival protein SurE 3 187 6.7E-60 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CLM_0283 36987e280d150c90820aa435117f7a08 252 SUPERFAMILY SSF64167 1 250 6.41E-75 T 13-10-2018 CLM_0283 36987e280d150c90820aa435117f7a08 252 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 252 32.627 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CLM_0283 36987e280d150c90820aa435117f7a08 252 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 238 4.2E-66 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CLM_3379 4657a0589d3633054470be37a20dee2a 201 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 201 30.362 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CLM_3379 4657a0589d3633054470be37a20dee2a 201 Gene3D G3DSA:3.40.50.620 3 201 1.9E-63 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3379 4657a0589d3633054470be37a20dee2a 201 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 200 1.1E-57 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CLM_3379 4657a0589d3633054470be37a20dee2a 201 SUPERFAMILY SSF52374 5 201 6.57E-54 T 13-10-2018 CLM_3379 4657a0589d3633054470be37a20dee2a 201 Pfam PF01467 Cytidylyltransferase-like 6 175 7.5E-32 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CLM_3379 4657a0589d3633054470be37a20dee2a 201 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 65 4.5E-11 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CLM_0203 fd3595f659a2e0c06ca16e753d641d4a 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 4.6E-169 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_0203 fd3595f659a2e0c06ca16e753d641d4a 418 SUPERFAMILY SSF55205 1 417 2.78E-134 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CLM_0203 fd3595f659a2e0c06ca16e753d641d4a 418 Gene3D G3DSA:3.65.10.10 21 231 2.3E-166 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CLM_0203 fd3595f659a2e0c06ca16e753d641d4a 418 Gene3D G3DSA:3.65.10.10 6 414 2.3E-166 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CLM_0203 fd3595f659a2e0c06ca16e753d641d4a 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 7.0E-101 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CLM_0203 fd3595f659a2e0c06ca16e753d641d4a 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 43.316 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_2028 cf040d93d7cdd6fe4770f9c4feabda26 217 PIRSF PIRSF038973 1 210 7.5E-70 T 13-10-2018 IPR014196 Stage II sporulation protein M CLM_2028 cf040d93d7cdd6fe4770f9c4feabda26 217 Pfam PF01944 Stage II sporulation protein M 24 200 5.9E-26 T 13-10-2018 IPR002798 Stage II sporulation protein M-like CLM_2028 cf040d93d7cdd6fe4770f9c4feabda26 217 TIGRFAM TIGR02831 spo_II_M: stage II sporulation protein M 8 205 3.3E-69 T 13-10-2018 IPR014196 Stage II sporulation protein M CLM_1550 ea2c02d8be59646a82bc3b9a5c106ee2 439 Gene3D G3DSA:1.20.1740.10 7 439 1.1E-97 T 13-10-2018 CLM_1550 ea2c02d8be59646a82bc3b9a5c106ee2 439 Pfam PF13520 Amino acid permease 13 408 1.1E-65 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1550 ea2c02d8be59646a82bc3b9a5c106ee2 439 PIRSF PIRSF006060 1 439 1.9E-88 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2980 0c0f4312cbc9e93e6e0ae7947465ec2a 58 Pfam PF09388 Spo0E like sporulation regulatory protein 9 50 8.3E-13 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 CLM_2980 0c0f4312cbc9e93e6e0ae7947465ec2a 58 Gene3D G3DSA:1.20.58.990 4 58 4.5E-8 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_2980 0c0f4312cbc9e93e6e0ae7947465ec2a 58 SUPERFAMILY SSF140500 6 54 3.4E-12 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_1503 e72b83c26c38ba69cbbc72da1d6b4965 215 SUPERFAMILY SSF64005 2 209 4.19E-47 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CLM_1503 e72b83c26c38ba69cbbc72da1d6b4965 215 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 3 209 1.4E-32 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CLM_1503 e72b83c26c38ba69cbbc72da1d6b4965 215 Pfam PF01255 Putative undecaprenyl diphosphate synthase 10 211 3.1E-40 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CLM_1503 e72b83c26c38ba69cbbc72da1d6b4965 215 Gene3D G3DSA:3.40.1180.10 1 215 2.0E-46 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CLM_1584 0f57faa9b4adc8a72ac047d0daacce69 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 369 1.3E-105 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_1584 0f57faa9b4adc8a72ac047d0daacce69 387 Gene3D G3DSA:3.40.50.1970 1 184 4.5E-57 T 13-10-2018 CLM_1584 0f57faa9b4adc8a72ac047d0daacce69 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_1584 0f57faa9b4adc8a72ac047d0daacce69 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CLM_1584 0f57faa9b4adc8a72ac047d0daacce69 387 SUPERFAMILY SSF56796 2 384 1.19E-117 T 13-10-2018 CLM_1584 0f57faa9b4adc8a72ac047d0daacce69 387 Gene3D G3DSA:1.20.1090.10 185 386 5.9E-51 T 13-10-2018 CLM_3897 0d38945039e5b52bfd3d1a82cfc7aa7b 282 PIRSF PIRSF004793 8 272 5.1E-96 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 CLM_3897 0d38945039e5b52bfd3d1a82cfc7aa7b 282 SUPERFAMILY SSF143597 44 244 1.01E-68 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLM_3897 0d38945039e5b52bfd3d1a82cfc7aa7b 282 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 17 253 3.3E-77 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 CLM_3897 0d38945039e5b52bfd3d1a82cfc7aa7b 282 Hamap MF_01499 Diadenylate cyclase [dacA]. 9 258 33.644 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 CLM_3897 0d38945039e5b52bfd3d1a82cfc7aa7b 282 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 123 239 6.9E-45 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLM_3897 0d38945039e5b52bfd3d1a82cfc7aa7b 282 Gene3D G3DSA:3.40.1700.10 107 258 5.4E-60 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 Gene3D G3DSA:3.40.1280.10 1 170 4.3E-69 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 240 103.107 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 SUPERFAMILY SSF75217 1 238 3.09E-98 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 Gene3D G3DSA:1.10.1270.20 171 240 2.9E-30 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 22 217 2.1E-62 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 PIRSF PIRSF000386 1 240 8.5E-102 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CLM_2738 d21b82b0489284ce9dc55d13deb608cb 240 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 230 1.4E-96 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CLM_3645 ab04c9057e45a9ce02cae3f5ad7ff168 261 Pfam PF01261 Xylose isomerase-like TIM barrel 23 204 6.6E-15 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CLM_3645 ab04c9057e45a9ce02cae3f5ad7ff168 261 Gene3D G3DSA:3.20.20.150 1 260 8.8E-38 T 13-10-2018 CLM_3645 ab04c9057e45a9ce02cae3f5ad7ff168 261 SUPERFAMILY SSF51658 1 257 4.1E-43 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CLM_3742 0396880ca3364feda44b8ec39dad838a 254 Gene3D G3DSA:2.40.50.1020 142 253 5.9E-16 T 13-10-2018 CLM_3742 0396880ca3364feda44b8ec39dad838a 254 Pfam PF04397 LytTr DNA-binding domain 158 252 5.2E-29 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_3742 0396880ca3364feda44b8ec39dad838a 254 Pfam PF00072 Response regulator receiver domain 7 111 3.1E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3742 0396880ca3364feda44b8ec39dad838a 254 SMART SM00850 157 253 3.5E-37 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_3742 0396880ca3364feda44b8ec39dad838a 254 Gene3D G3DSA:3.40.50.2300 1 131 5.6E-30 T 13-10-2018 CLM_3742 0396880ca3364feda44b8ec39dad838a 254 SUPERFAMILY SSF52172 4 122 3.27E-26 T 13-10-2018 IPR011006 CheY-like superfamily CLM_3742 0396880ca3364feda44b8ec39dad838a 254 SMART SM00448 4 115 7.4E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_3650 e205b77121c1d2fb8c79a6e7b6b0928b 283 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 4 259 1.2E-71 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_3650 e205b77121c1d2fb8c79a6e7b6b0928b 283 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 257 8.8E-29 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3650 e205b77121c1d2fb8c79a6e7b6b0928b 283 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 1 282 37.738 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CLM_3650 e205b77121c1d2fb8c79a6e7b6b0928b 283 SUPERFAMILY SSF51366 3 260 2.87E-70 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CLM_3650 e205b77121c1d2fb8c79a6e7b6b0928b 283 SMART SM00934 15 264 2.1E-44 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CLM_3650 e205b77121c1d2fb8c79a6e7b6b0928b 283 Gene3D G3DSA:3.20.20.70 1 282 3.2E-97 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1923 025e57df1478d80f49edf50bb3d71134 301 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CLM_1923 025e57df1478d80f49edf50bb3d71134 301 Pfam PF00294 pfkB family carbohydrate kinase 13 289 3.7E-46 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CLM_1923 025e57df1478d80f49edf50bb3d71134 301 SUPERFAMILY SSF53613 1 299 3.27E-62 T 13-10-2018 IPR029056 Ribokinase-like CLM_1923 025e57df1478d80f49edf50bb3d71134 301 PIRSF PIRSF000535 1 301 2.0E-75 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CLM_1923 025e57df1478d80f49edf50bb3d71134 301 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 300 1.5E-108 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 CLM_1923 025e57df1478d80f49edf50bb3d71134 301 Gene3D G3DSA:3.40.1190.20 1 301 1.0E-95 T 13-10-2018 IPR029056 Ribokinase-like CLM_1923 025e57df1478d80f49edf50bb3d71134 301 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 300 5.8E-106 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CLM_4117 ddfe2b01ed7e8c866a823a2ad4cc0a59 124 SUPERFAMILY SSF51735 6 121 2.66E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_4117 ddfe2b01ed7e8c866a823a2ad4cc0a59 124 Pfam PF13380 CoA binding domain 10 120 4.9E-22 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CLM_4117 ddfe2b01ed7e8c866a823a2ad4cc0a59 124 Gene3D G3DSA:3.40.50.720 7 123 3.3E-25 T 13-10-2018 CLM_4117 ddfe2b01ed7e8c866a823a2ad4cc0a59 124 SMART SM00881 6 95 0.0024 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CLM_1457 6c26fa797cd0f61e8a6b7a8a93dd5d43 420 SUPERFAMILY SSF53448 50 321 4.69E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1457 6c26fa797cd0f61e8a6b7a8a93dd5d43 420 Gene3D G3DSA:3.90.550.10 37 274 1.0E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1457 6c26fa797cd0f61e8a6b7a8a93dd5d43 420 Pfam PF13641 Glycosyltransferase like family 2 53 283 5.7E-37 T 13-10-2018 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 Gene3D G3DSA:1.20.1330.10 48 231 5.2E-46 T 13-10-2018 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 140 4.1E-28 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 Pfam PF00700 Bacterial flagellin C-terminal helical region 193 278 2.8E-14 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 SUPERFAMILY SSF64518 1 278 2.62E-66 T 13-10-2018 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 Gene3D G3DSA:1.10.8.410 232 279 1.6E-12 T 13-10-2018 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 PRINTS PR00207 Flagellin signature 74 93 3.0E-12 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 PRINTS PR00207 Flagellin signature 109 132 3.0E-12 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3032 50e970fbc4934015d0ed3671d92c94d7 284 PRINTS PR00207 Flagellin signature 35 52 3.0E-12 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 SUPERFAMILY SSF53383 105 477 5.52E-72 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 Gene3D G3DSA:1.10.10.10 1 88 5.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 Gene3D G3DSA:3.40.640.10 103 471 1.3E-106 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 SUPERFAMILY SSF46785 8 82 1.34E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 6.3E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 SMART SM00345 19 78 3.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1011 2d359c1f2e49f9e9102a3060e5c02ba0 478 Pfam PF00155 Aminotransferase class I and II 126 443 1.5E-22 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1988 dc844eec072f2a7594ecfb49ba6392ed 389 Gene3D G3DSA:3.60.40.10 1 225 9.2E-28 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_1988 dc844eec072f2a7594ecfb49ba6392ed 389 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 32 216 2.0E-14 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_1988 dc844eec072f2a7594ecfb49ba6392ed 389 SMART SM00331 4 218 9.0E-4 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_1988 dc844eec072f2a7594ecfb49ba6392ed 389 SUPERFAMILY SSF81606 5 217 3.14E-10 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 339 3.5E-127 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 PIRSF PIRSF006004 1 342 1.8E-133 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 SUPERFAMILY SSF102114 99 286 5.1E-11 T 13-10-2018 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 1 341 69.869 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 Gene3D G3DSA:3.20.20.70 63 326 8.5E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 Pfam PF04055 Radical SAM superfamily 105 265 3.2E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 Pfam PF13394 4Fe-4S single cluster domain 110 199 7.5E-8 T 13-10-2018 CLM_2806 efb074484b04794c577e5c9df0f95b3d 342 Gene3D G3DSA:1.10.150.530 2 61 1.5E-16 T 13-10-2018 CLM_3444 e42061c25daf063e20c7d01299d04235 266 Pfam PF01695 IstB-like ATP binding protein 84 225 2.0E-12 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CLM_3444 e42061c25daf063e20c7d01299d04235 266 SMART SM00382 111 237 5.0E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3444 e42061c25daf063e20c7d01299d04235 266 Gene3D G3DSA:3.40.50.300 59 243 2.1E-48 T 13-10-2018 CLM_3444 e42061c25daf063e20c7d01299d04235 266 SUPERFAMILY SSF52540 77 236 2.83E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1424 f239139b7093f3d674bc1fd2d6b2fd8c 203 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 6 197 1.3E-59 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CLM_1424 f239139b7093f3d674bc1fd2d6b2fd8c 203 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 4 201 1.7E-57 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CLM_1424 f239139b7093f3d674bc1fd2d6b2fd8c 203 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 5 201 33.138 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CLM_1424 f239139b7093f3d674bc1fd2d6b2fd8c 203 Gene3D G3DSA:3.10.300.10 1 203 1.4E-71 T 13-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CLM_1424 f239139b7093f3d674bc1fd2d6b2fd8c 203 SUPERFAMILY SSF50486 2 202 4.16E-66 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 CLM_1056 2da6369f58b4d79b6f45f5e8dd9dd876 185 Gene3D G3DSA:3.40.50.300 7 185 2.0E-58 T 13-10-2018 CLM_1056 2da6369f58b4d79b6f45f5e8dd9dd876 185 PIRSF PIRSF006135 6 185 2.8E-56 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 CLM_1056 2da6369f58b4d79b6f45f5e8dd9dd876 185 SUPERFAMILY SSF52540 7 184 8.92E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1056 2da6369f58b4d79b6f45f5e8dd9dd876 185 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 8 184 8.4E-58 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 Gene3D G3DSA:1.10.10.60 182 238 4.2E-15 T 13-10-2018 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 Gene3D G3DSA:2.60.120.10 13 86 4.3E-5 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0731 727eb5f38607b781c15396b41ebc288a 241 Pfam PF12833 Helix-turn-helix domain 154 232 3.0E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 Gene3D G3DSA:1.10.10.60 131 181 9.2E-13 T 13-10-2018 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 185 227 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 SUPERFAMILY SSF46689 184 234 7.62E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 SUPERFAMILY SSF46689 136 182 3.05E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 Pfam PF02311 AraC-like ligand binding domain 9 66 7.0E-6 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CLM_0731 727eb5f38607b781c15396b41ebc288a 241 SUPERFAMILY SSF51215 13 70 4.58E-8 T 13-10-2018 IPR037923 Transcription regulator HTH-like CLM_0731 727eb5f38607b781c15396b41ebc288a 241 SMART SM00342 148 231 2.7E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0337 44b07ff0a8b2789ce8fb6f4aaba29624 169 SUPERFAMILY SSF51261 22 166 7.67E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0337 44b07ff0a8b2789ce8fb6f4aaba29624 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 87 99 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0337 44b07ff0a8b2789ce8fb6f4aaba29624 169 Gene3D G3DSA:2.70.70.10 12 169 1.3E-57 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0337 44b07ff0a8b2789ce8fb6f4aaba29624 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 25 145 7.5E-51 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0337 44b07ff0a8b2789ce8fb6f4aaba29624 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 26 144 2.1E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_1785 3b4c38a07ca7bcde747bb0a0c241c5e1 141 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 137 3.2E-29 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 Pfam PF00258 Flavodoxin 257 347 1.8E-6 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 ProSitePatterns PS00201 Flavodoxin signature. 257 273 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 Gene3D G3DSA:3.60.15.10 2 247 1.3E-91 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 Pfam PF00753 Metallo-beta-lactamase superfamily 35 170 3.7E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 PIRSF PIRSF005243 1 399 1.5E-120 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 SMART SM00849 35 227 2.9E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 SUPERFAMILY SSF52218 252 398 5.65E-23 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 Gene3D G3DSA:3.40.50.360 249 398 1.2E-26 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3209 5b27dacd5146035bc1221429fbd02d9b 399 SUPERFAMILY SSF56281 5 291 4.34E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_3467 435104ab64b22b8327d487883e5812b9 287 PRINTS PR01755 Bacterial translocase SecF protein signature 29 44 1.9E-31 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3467 435104ab64b22b8327d487883e5812b9 287 PRINTS PR01755 Bacterial translocase SecF protein signature 219 234 1.9E-31 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3467 435104ab64b22b8327d487883e5812b9 287 PRINTS PR01755 Bacterial translocase SecF protein signature 139 153 1.9E-31 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3467 435104ab64b22b8327d487883e5812b9 287 PRINTS PR01755 Bacterial translocase SecF protein signature 187 205 1.9E-31 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_3467 435104ab64b22b8327d487883e5812b9 287 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 2 281 27.363 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CLM_3467 435104ab64b22b8327d487883e5812b9 287 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 30 270 7.3E-76 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CLM_3467 435104ab64b22b8327d487883e5812b9 287 Gene3D G3DSA:1.20.1640.10 85 283 1.4E-8 T 13-10-2018 CLM_3467 435104ab64b22b8327d487883e5812b9 287 Pfam PF02355 Protein export membrane protein 103 279 7.3E-66 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CLM_3467 435104ab64b22b8327d487883e5812b9 287 Pfam PF07549 SecD/SecF GG Motif 25 46 2.7E-7 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CLM_3467 435104ab64b22b8327d487883e5812b9 287 SUPERFAMILY SSF82866 79 280 2.75E-36 T 13-10-2018 CLM_3467 435104ab64b22b8327d487883e5812b9 287 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 53 267 6.4E-53 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLM_2382 cd652c47b61dd2183912827b5d491e98 311 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 304 2.1E-70 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_2382 cd652c47b61dd2183912827b5d491e98 311 Gene3D G3DSA:3.10.310.10 8 299 1.5E-87 T 13-10-2018 CLM_2382 cd652c47b61dd2183912827b5d491e98 311 SUPERFAMILY SSF54506 4 306 2.27E-63 T 13-10-2018 CLM_2382 cd652c47b61dd2183912827b5d491e98 311 Gene3D G3DSA:3.10.310.10 128 297 1.5E-87 T 13-10-2018 CLM_2382 cd652c47b61dd2183912827b5d491e98 311 PIRSF PIRSF016184 1 308 2.0E-81 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_2382 cd652c47b61dd2183912827b5d491e98 311 Pfam PF02567 Phenazine biosynthesis-like protein 9 301 1.7E-63 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Gene3D G3DSA:3.40.50.620 198 390 2.0E-79 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 3.6E-6 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 3.6E-6 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 3.6E-6 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 201 510 3.7E-159 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 47 61 3.9E-5 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 6 20 3.9E-5 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 77 93 3.9E-5 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 3 510 56.075 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Gene3D G3DSA:3.40.50.880 3 197 1.1E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Gene3D G3DSA:3.30.300.10 391 510 3.7E-54 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 SUPERFAMILY SSF52402 181 432 1.42E-57 T 13-10-2018 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Pfam PF00958 GMP synthase C terminal domain 418 509 8.2E-45 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 6 192 2.6E-80 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Pfam PF00117 Glutamine amidotransferase class-I 8 188 1.3E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 Pfam PF02540 NAD synthase 205 277 3.3E-6 T 13-10-2018 IPR022310 NAD/GMP synthase CLM_3728 c36be0eed41601c7d80b1304c65ab593 510 SUPERFAMILY SSF52317 5 198 3.77E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_2349 4cae2c57584adfcf36cb518d58f3f4e3 718 Gene3D G3DSA:1.10.390.60 473 718 2.1E-21 T 13-10-2018 CLM_2349 4cae2c57584adfcf36cb518d58f3f4e3 718 Pfam PF01433 Peptidase family M1 domain 552 709 1.0E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CLM_2349 4cae2c57584adfcf36cb518d58f3f4e3 718 SUPERFAMILY SSF55486 498 710 2.42E-14 T 13-10-2018 CLM_3940 99b6ecfe2453d9c60e30c0035fc8c13a 70 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 63 18.15 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3940 99b6ecfe2453d9c60e30c0035fc8c13a 70 TIGRFAM TIGR00012 L29: ribosomal protein uL29 8 63 1.0E-26 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3940 99b6ecfe2453d9c60e30c0035fc8c13a 70 Pfam PF00831 Ribosomal L29 protein 7 62 2.3E-27 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3940 99b6ecfe2453d9c60e30c0035fc8c13a 70 SUPERFAMILY SSF46561 6 65 1.7E-22 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3940 99b6ecfe2453d9c60e30c0035fc8c13a 70 Gene3D G3DSA:1.10.287.310 1 70 4.2E-27 T 13-10-2018 CLM_3940 99b6ecfe2453d9c60e30c0035fc8c13a 70 ProSitePatterns PS00579 Ribosomal protein L29 signature. 42 56 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_0574 071b1890d1215098b4c0c5e1795bfa01 360 SUPERFAMILY SSF69572 177 335 1.12E-6 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CLM_0574 071b1890d1215098b4c0c5e1795bfa01 360 Gene3D G3DSA:3.40.50.720 166 334 1.4E-17 T 13-10-2018 CLM_0574 071b1890d1215098b4c0c5e1795bfa01 360 TIGRFAM TIGR03603 cyclo_dehy_ocin: thiazole/oxazole-forming peptide maturase, SagC family component 30 356 1.0E-136 T 13-10-2018 IPR019892 Thiazole/oxazole-forming peptide maturase, SagC family component CLM_2486 5878e1fedcb73b29bcb6555b6e77915b 116 SUPERFAMILY SSF47413 57 111 1.25E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2486 5878e1fedcb73b29bcb6555b6e77915b 116 SMART SM00530 62 116 0.001 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2486 5878e1fedcb73b29bcb6555b6e77915b 116 Pfam PF01381 Helix-turn-helix 63 112 5.6E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2486 5878e1fedcb73b29bcb6555b6e77915b 116 Gene3D G3DSA:1.10.260.40 56 116 2.3E-8 T 13-10-2018 CLM_0974 b22918390977f60d96c27a17fc461c6f 146 Gene3D G3DSA:2.60.40.790 8 145 6.7E-37 T 13-10-2018 IPR008978 HSP20-like chaperone CLM_0974 b22918390977f60d96c27a17fc461c6f 146 Pfam PF00011 Hsp20/alpha crystallin family 45 146 4.1E-26 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain CLM_0974 b22918390977f60d96c27a17fc461c6f 146 SUPERFAMILY SSF49764 15 145 2.79E-37 T 13-10-2018 IPR008978 HSP20-like chaperone CLM_1422 9aba807d1019f3ce3134cb89e2d90315 512 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 255 333 3.7E-8 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CLM_1422 9aba807d1019f3ce3134cb89e2d90315 512 Gene3D G3DSA:3.40.47.10 184 408 2.4E-9 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_1422 9aba807d1019f3ce3134cb89e2d90315 512 SUPERFAMILY SSF53901 184 291 2.06E-12 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CLM_1422 9aba807d1019f3ce3134cb89e2d90315 512 PIRSF PIRSF037559 1 512 1.3E-276 T 13-10-2018 IPR017236 Glycine/sarcosine/betaine reductase, component C, beta CLM_3899 f8754151abad52985054d8f308953b9b 177 Gene3D G3DSA:2.40.10.420 138 175 4.7E-13 T 13-10-2018 CLM_3899 f8754151abad52985054d8f308953b9b 177 Gene3D G3DSA:1.10.10.2520 57 137 8.7E-26 T 13-10-2018 CLM_3899 f8754151abad52985054d8f308953b9b 177 Pfam PF07486 Cell Wall Hydrolase 74 174 5.4E-27 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 CLM_2318 0922155728bcd6f555bc8784b17a03bf 220 Gene3D G3DSA:2.60.120.10 83 219 8.7E-50 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_2318 0922155728bcd6f555bc8784b17a03bf 220 Pfam PF06249 Ethanolamine utilisation protein EutQ 80 217 1.5E-35 T 13-10-2018 IPR010424 Ethanolamine utilisation EutQ CLM_2318 0922155728bcd6f555bc8784b17a03bf 220 SUPERFAMILY SSF51182 97 216 1.01E-24 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_2239 53915c5e430bf476c71d3a02c5c94ccc 70 Pfam PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) 8 69 2.2E-32 T 13-10-2018 IPR018652 Protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon CLM_1185 d10208d51963673447795dccc5ef8d40 73 SMART SM00899 2 73 3.6E-19 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_1185 d10208d51963673447795dccc5ef8d40 73 Gene3D G3DSA:2.30.30.90 1 73 3.6E-24 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain CLM_1185 d10208d51963673447795dccc5ef8d40 73 SUPERFAMILY SSF50037 6 73 9.16E-21 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CLM_1185 d10208d51963673447795dccc5ef8d40 73 Pfam PF04023 FeoA domain 2 73 8.2E-16 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_1086 b220ef6402663113ba121abb8dcadf18 359 Gene3D G3DSA:3.30.2110.10 15 183 6.8E-53 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CLM_1086 b220ef6402663113ba121abb8dcadf18 359 PIRSF PIRSF026782 9 359 1.1E-123 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CLM_1086 b220ef6402663113ba121abb8dcadf18 359 Pfam PF01888 CbiD 13 267 3.9E-97 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CLM_1086 b220ef6402663113ba121abb8dcadf18 359 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 20 358 2.4E-88 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CLM_1086 b220ef6402663113ba121abb8dcadf18 359 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 13 357 29.2 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CLM_1086 b220ef6402663113ba121abb8dcadf18 359 SUPERFAMILY SSF111342 3 284 4.18E-87 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 363 1.7E-63 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 Gene3D G3DSA:3.40.140.10 1 136 1.7E-45 T 13-10-2018 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 100 1.3E-21 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_3262 df2013c1b6d70907622e31b63b154e46 365 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 359 6.7E-118 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 SUPERFAMILY SSF53927 5 145 3.01E-44 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 Gene3D G3DSA:3.40.430.10 137 364 1.2E-69 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 Pfam PF01872 RibD C-terminal domain 148 359 8.0E-47 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 PIRSF PIRSF006769 1 365 3.5E-137 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 CLM_3262 df2013c1b6d70907622e31b63b154e46 365 SUPERFAMILY SSF53597 148 363 9.21E-56 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CLM_2369 548c166173f6658542f4c4126fd1b023 204 SUPERFAMILY SSF51161 2 194 4.71E-55 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_2369 548c166173f6658542f4c4126fd1b023 204 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CLM_2369 548c166173f6658542f4c4126fd1b023 204 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 164 7.4E-10 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_2369 548c166173f6658542f4c4126fd1b023 204 Pfam PF12464 Maltose acetyltransferase 6 57 1.4E-10 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CLM_2369 548c166173f6658542f4c4126fd1b023 204 Gene3D G3DSA:2.160.10.10 1 201 4.6E-71 T 13-10-2018 CLM_2369 548c166173f6658542f4c4126fd1b023 204 SMART SM01266 4 58 1.7E-13 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CLM_3006 74048c396c57f63c2eed927813319ea3 212 Pfam PF02796 Helix-turn-helix domain of resolvase 167 200 1.4E-5 T 13-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 CLM_2863 d18a7f33ec22c04d71414e25c98a362c 218 SUPERFAMILY SSF53335 31 215 5.23E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2863 d18a7f33ec22c04d71414e25c98a362c 218 Pfam PF01596 O-methyltransferase 18 213 1.6E-34 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 CLM_2863 d18a7f33ec22c04d71414e25c98a362c 218 Gene3D G3DSA:3.40.50.150 3 218 5.8E-60 T 13-10-2018 CLM_2350 07d1f0fa4ddb21813a803cd2d29c15b0 291 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2350 07d1f0fa4ddb21813a803cd2d29c15b0 291 SUPERFAMILY SSF52540 3 224 4.02E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2350 07d1f0fa4ddb21813a803cd2d29c15b0 291 Pfam PF00005 ABC transporter 23 164 8.3E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2350 07d1f0fa4ddb21813a803cd2d29c15b0 291 Gene3D G3DSA:3.40.50.300 1 236 1.5E-65 T 13-10-2018 CLM_2350 07d1f0fa4ddb21813a803cd2d29c15b0 291 SMART SM00382 32 214 1.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1713 02745d644be65b220fc5d73e14904ee2 305 SMART SM00363 15 74 1.3E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 Pfam PF01479 S4 domain 15 61 9.0E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 SUPERFAMILY SSF55174 14 101 3.36E-10 T 13-10-2018 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 300 1.6E-100 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 SUPERFAMILY SSF55120 74 301 3.08E-81 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 Gene3D G3DSA:3.10.290.10 3 69 6.1E-17 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 Pfam PF00849 RNA pseudouridylate synthase 88 242 1.1E-37 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1713 02745d644be65b220fc5d73e14904ee2 305 Gene3D G3DSA:3.30.2350.10 81 304 3.8E-79 T 13-10-2018 CLM_1014 0f26aad79922f89852b5fc8b39772171 268 SUPERFAMILY SSF54862 195 222 2.39E-5 T 13-10-2018 CLM_0618 66b2a793c0fbf21858a32f92146659e3 331 Gene3D G3DSA:3.40.50.200 2 239 2.4E-24 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_0618 66b2a793c0fbf21858a32f92146659e3 331 Pfam PF00082 Subtilase family 36 219 4.7E-6 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CLM_0618 66b2a793c0fbf21858a32f92146659e3 331 SUPERFAMILY SSF52743 3 219 3.01E-27 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 CLM_0416 25deac19860f9a64b8ae42a252302c74 159 Pfam PF11385 Protein of unknown function (DUF3189) 5 151 1.3E-54 T 13-10-2018 IPR021525 Protein of unknown function DUF3189 CLM_1442 68b9edda1de3ea3c3285eb5b1b969cb4 81 Gene3D G3DSA:1.20.1280.290 1 81 7.7E-7 T 13-10-2018 CLM_2973 ce84a03846a95f7fd3ad9ef24fb78c6c 239 Pfam PF09335 SNARE associated Golgi protein 66 182 4.8E-32 T 13-10-2018 IPR032816 SNARE associated Golgi protein CLM_0387 06233746aa705b83b44a41acf7c49974 326 SMART SM00387 216 326 4.5E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0387 06233746aa705b83b44a41acf7c49974 326 PRINTS PR00344 Bacterial sensor protein C-terminal signature 272 282 6.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0387 06233746aa705b83b44a41acf7c49974 326 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 325 6.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0387 06233746aa705b83b44a41acf7c49974 326 PRINTS PR00344 Bacterial sensor protein C-terminal signature 254 268 6.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0387 06233746aa705b83b44a41acf7c49974 326 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 306 6.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_0387 06233746aa705b83b44a41acf7c49974 326 Gene3D G3DSA:3.30.565.10 174 326 6.7E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0387 06233746aa705b83b44a41acf7c49974 326 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 218 324 3.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_0387 06233746aa705b83b44a41acf7c49974 326 SUPERFAMILY SSF55874 163 325 3.27E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1023 c670f62b9364a77998fead880a246a5e 317 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 17 316 7.5E-86 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1023 c670f62b9364a77998fead880a246a5e 317 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 3 317 20.082 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1023 c670f62b9364a77998fead880a246a5e 317 ProSitePatterns PS01348 MraY family signature 2. 164 175 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1023 c670f62b9364a77998fead880a246a5e 317 Pfam PF00953 Glycosyl transferase family 4 77 244 1.4E-33 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CLM_2936 02f01d2905706802c42537dc6a0b5fe3 161 Pfam PF05119 Phage terminase, small subunit 49 144 7.6E-25 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CLM_2936 02f01d2905706802c42537dc6a0b5fe3 161 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 39 152 2.6E-21 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CLM_0409 d54e96aab6aa13920146c0a7066d557d 288 PIRSF PIRSF004976 9 287 2.8E-69 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 CLM_0409 d54e96aab6aa13920146c0a7066d557d 288 Gene3D G3DSA:3.40.50.620 22 281 2.9E-48 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_0409 d54e96aab6aa13920146c0a7066d557d 288 SUPERFAMILY SSF52402 31 232 1.02E-45 T 13-10-2018 CLM_0409 d54e96aab6aa13920146c0a7066d557d 288 Pfam PF01171 PP-loop family 55 218 4.4E-17 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CLM_1408 c286c11fed2278b0bbed2cfdbe1a8e30 85 Pfam PF12728 Helix-turn-helix domain 1 50 9.8E-7 T 13-10-2018 CLM_1408 c286c11fed2278b0bbed2cfdbe1a8e30 85 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 2 47 1.3E-7 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 CLM_0875 e75353f6803afbf8ed2408f182910289 79 ProSitePatterns PS00050 Ribosomal protein L23 signature. 48 63 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_0875 e75353f6803afbf8ed2408f182910289 79 SUPERFAMILY SSF55008 10 77 1.7E-18 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_0875 e75353f6803afbf8ed2408f182910289 79 Pfam PF00403 Heavy-metal-associated domain 14 75 1.2E-12 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_0875 e75353f6803afbf8ed2408f182910289 79 PRINTS PR00946 Mercury scavenger protein signature 65 79 1.5E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CLM_0875 e75353f6803afbf8ed2408f182910289 79 PRINTS PR00946 Mercury scavenger protein signature 8 19 1.5E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CLM_0875 e75353f6803afbf8ed2408f182910289 79 PRINTS PR00946 Mercury scavenger protein signature 19 35 1.5E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CLM_0875 e75353f6803afbf8ed2408f182910289 79 PRINTS PR00946 Mercury scavenger protein signature 35 50 1.5E-9 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CLM_0875 e75353f6803afbf8ed2408f182910289 79 Gene3D G3DSA:3.30.70.100 12 79 1.3E-18 T 13-10-2018 CLM_3239 a5a5fe005572927606c4279eedadb586 365 Pfam PF00144 Beta-lactamase 14 347 5.4E-46 T 13-10-2018 IPR001466 Beta-lactamase-related CLM_3239 a5a5fe005572927606c4279eedadb586 365 SUPERFAMILY SSF56601 2 359 5.83E-61 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_3239 a5a5fe005572927606c4279eedadb586 365 Gene3D G3DSA:3.40.710.10 1 353 1.1E-70 T 13-10-2018 CLM_2630 f80f9945cf6f58287dd0e079afacedf4 137 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 8 109 1.6E-12 T 13-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system CLM_2630 f80f9945cf6f58287dd0e079afacedf4 137 Gene3D G3DSA:3.30.160.250 1 100 2.7E-21 T 13-10-2018 CLM_2630 f80f9945cf6f58287dd0e079afacedf4 137 SUPERFAMILY SSF143100 2 70 8.63E-14 T 13-10-2018 IPR035069 TTHA1013/TTHA0281-like CLM_0358 3150ae170c671a157b2f3d1ca99e4500 345 SUPERFAMILY SSF46689 292 339 1.43E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_0358 3150ae170c671a157b2f3d1ca99e4500 345 Gene3D G3DSA:1.10.10.60 236 342 1.8E-23 T 13-10-2018 CLM_0358 3150ae170c671a157b2f3d1ca99e4500 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 306 321 2.0E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0358 3150ae170c671a157b2f3d1ca99e4500 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 321 337 2.0E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_0358 3150ae170c671a157b2f3d1ca99e4500 345 SMART SM00342 253 337 7.0E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_0358 3150ae170c671a157b2f3d1ca99e4500 345 Pfam PF12833 Helix-turn-helix domain 260 337 1.9E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2299 d40008ffd34fc709bc01438926369b1f 300 Pfam PF08878 Domain of unknown function (DUF1837) 49 284 4.1E-62 T 13-10-2018 IPR014976 Protein of unknown function DUF1837 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 Gene3D G3DSA:3.40.50.10490 227 418 1.3E-74 T 13-10-2018 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 395 409 8.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 274 295 8.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 377 395 8.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 77 96 8.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 199 217 8.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 409 422 8.7E-25 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 Gene3D G3DSA:3.40.50.10490 40 226 6.2E-76 T 13-10-2018 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 Pfam PF00342 Phosphoglucose isomerase 77 427 1.8E-22 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 SUPERFAMILY SSF53697 7 448 1.93E-133 T 13-10-2018 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 203 216 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3712 c9fbf3119cea44075b56a1216868c0f0 450 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 2 436 24.593 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 Gene3D G3DSA:2.40.150.20 1 122 2.0E-53 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 5.7E-57 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 SMART SM01374 1 122 4.6E-86 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.2E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.67 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CLM_3938 fdad47752323bcec81e3034daaff7e15 122 SUPERFAMILY SSF50193 1 122 2.49E-51 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 CLM_2768 2f1dd118bf584e7243aaeb91711535ee 481 Pfam PF13520 Amino acid permease 5 440 2.9E-56 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2768 2f1dd118bf584e7243aaeb91711535ee 481 PIRSF PIRSF006060 1 480 3.9E-53 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2768 2f1dd118bf584e7243aaeb91711535ee 481 Gene3D G3DSA:1.20.1740.10 1 464 4.1E-36 T 13-10-2018 CLM_0825 7f5ffa712189489a50631275348483df 232 Gene3D G3DSA:1.10.10.10 131 229 7.7E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0825 7f5ffa712189489a50631275348483df 232 Gene3D G3DSA:3.40.50.2300 2 130 5.0E-33 T 13-10-2018 CLM_0825 7f5ffa712189489a50631275348483df 232 SUPERFAMILY SSF52172 3 118 3.84E-34 T 13-10-2018 IPR011006 CheY-like superfamily CLM_0825 7f5ffa712189489a50631275348483df 232 SMART SM00448 2 112 2.4E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0825 7f5ffa712189489a50631275348483df 232 Pfam PF00072 Response regulator receiver domain 4 112 1.2E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_0825 7f5ffa712189489a50631275348483df 232 SMART SM00862 147 224 1.9E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_0825 7f5ffa712189489a50631275348483df 232 SUPERFAMILY SSF46894 123 224 2.44E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_0825 7f5ffa712189489a50631275348483df 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 223 1.6E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CLM_1217 84f2315875c200027438dc1c0474ddb2 194 SUPERFAMILY SSF56112 20 139 4.71E-13 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_1217 84f2315875c200027438dc1c0474ddb2 194 Gene3D G3DSA:1.10.510.10 4 139 1.3E-6 T 13-10-2018 CLM_0582 a71e0f60ea2a7d02ca11e8a0068b0a5b 216 Pfam PF02163 Peptidase family M50 132 177 1.7E-7 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 PIRSF PIRSF005485 1 339 1.3E-106 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 Pfam PF01628 HrcA protein C terminal domain 104 321 1.4E-58 T 13-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 328 28.473 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 Gene3D G3DSA:3.30.390.60 128 229 1.5E-53 T 13-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 2 333 3.7E-101 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 SUPERFAMILY SSF55781 70 337 5.3E-56 T 13-10-2018 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 Gene3D G3DSA:1.10.10.10 1 84 9.7E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 Pfam PF08279 HTH domain 10 71 1.9E-5 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 SUPERFAMILY SSF46785 1 83 3.83E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3356 66d35aa7a9c4349665e59b682f77e78a 343 Gene3D G3DSA:3.30.450.40 105 334 1.5E-53 T 13-10-2018 IPR029016 GAF-like domain superfamily CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 SUPERFAMILY SSF56281 10 284 6.77E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 Gene3D G3DSA:3.60.15.10 1 243 1.1E-82 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 SUPERFAMILY SSF52218 248 397 2.74E-30 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 Pfam PF00258 Flavodoxin 253 364 4.8E-10 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 Gene3D G3DSA:3.40.50.360 250 404 1.5E-32 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 PIRSF PIRSF005243 1 408 3.3E-129 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 CLM_0772 18ee23aa84564f20c63e28a2d6ee0d6a 410 SMART SM00849 34 223 8.0E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0915 60790d4e744cb827827f5a751f3c7ecb 311 SUPERFAMILY SSF52540 4 222 7.46E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0915 60790d4e744cb827827f5a751f3c7ecb 311 Gene3D G3DSA:3.40.50.300 2 237 1.9E-58 T 13-10-2018 CLM_0915 60790d4e744cb827827f5a751f3c7ecb 311 Pfam PF00005 ABC transporter 23 164 1.4E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0915 60790d4e744cb827827f5a751f3c7ecb 311 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0915 60790d4e744cb827827f5a751f3c7ecb 311 SMART SM00382 32 213 5.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3081 f33f2898aea3ad3d436dc67c73b21f38 376 PIRSF PIRSF000390 1 376 5.9E-103 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_3081 f33f2898aea3ad3d436dc67c73b21f38 376 Gene3D G3DSA:3.90.1150.10 250 375 4.7E-36 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_3081 f33f2898aea3ad3d436dc67c73b21f38 376 SUPERFAMILY SSF53383 2 374 5.3E-107 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3081 f33f2898aea3ad3d436dc67c73b21f38 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 10 371 2.4E-91 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLM_3081 f33f2898aea3ad3d436dc67c73b21f38 376 Gene3D G3DSA:3.40.640.10 1 249 8.3E-78 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3081 f33f2898aea3ad3d436dc67c73b21f38 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 374 1.1E-159 T 13-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 CLM_2833 6f836dfb3690a130cc849be35f1cfd33 239 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 16 234 4.8E-55 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase CLM_2833 6f836dfb3690a130cc849be35f1cfd33 239 Gene3D G3DSA:3.60.140.10 8 239 7.9E-60 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily CLM_2833 6f836dfb3690a130cc849be35f1cfd33 239 SUPERFAMILY SSF64438 33 237 1.52E-57 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic CLM_2833 6f836dfb3690a130cc849be35f1cfd33 239 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 39 236 3.7E-53 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase CLM_2212 d225dfb7c8a232be92cfaafad9986726 135 Pfam PF11208 Protein of unknown function (DUF2992) 4 135 3.0E-52 T 13-10-2018 IPR016787 Uncharacterised conserved protein UCP021328 CLM_2212 d225dfb7c8a232be92cfaafad9986726 135 PIRSF PIRSF021328 1 135 4.5E-47 T 13-10-2018 IPR016787 Uncharacterised conserved protein UCP021328 CLM_2724 0093190e03bd50b7616a5ae393af6dd7 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 22 249 9.4E-90 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CLM_2724 0093190e03bd50b7616a5ae393af6dd7 252 Gene3D G3DSA:3.40.1180.10 4 251 5.6E-99 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CLM_2724 0093190e03bd50b7616a5ae393af6dd7 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 29 249 3.0E-84 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CLM_2724 0093190e03bd50b7616a5ae393af6dd7 252 SUPERFAMILY SSF64005 17 244 6.93E-93 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CLM_2724 0093190e03bd50b7616a5ae393af6dd7 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 22 250 41.613 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CLM_2724 0093190e03bd50b7616a5ae393af6dd7 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 195 212 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 CLM_0636 b9a6045b672e3b8812732f2793509ceb 178 Pfam PF02417 Chromate transporter 5 169 8.1E-49 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 CLM_0931 09a814751665b65ec1970653c7852232 342 Pfam PF13170 Protein of unknown function (DUF4003) 26 323 2.1E-109 T 13-10-2018 IPR025062 Protein of unknown function DUF4003 CLM_0609 ef627a9f4fa76d88c79e7f8d1c90cbb4 137 Gene3D G3DSA:1.20.120.50 1 136 3.8E-38 T 13-10-2018 IPR035938 Hemerythrin-like superfamily CLM_0609 ef627a9f4fa76d88c79e7f8d1c90cbb4 137 Pfam PF01814 Hemerythrin HHE cation binding domain 12 127 4.3E-12 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CLM_0609 ef627a9f4fa76d88c79e7f8d1c90cbb4 137 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 3 131 3.0E-35 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 CLM_0609 ef627a9f4fa76d88c79e7f8d1c90cbb4 137 ProSitePatterns PS00550 Hemerythrin family signature. 59 82 - T 13-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 CLM_0609 ef627a9f4fa76d88c79e7f8d1c90cbb4 137 SUPERFAMILY SSF47188 1 131 1.03E-31 T 13-10-2018 IPR035938 Hemerythrin-like superfamily CLM_0157 bd0469b675c6ce72857221fa53810fd4 334 Gene3D G3DSA:3.90.1200.10 91 325 2.5E-73 T 13-10-2018 CLM_0157 bd0469b675c6ce72857221fa53810fd4 334 Pfam PF01633 Choline/ethanolamine kinase 88 243 2.6E-12 T 13-10-2018 CLM_0157 bd0469b675c6ce72857221fa53810fd4 334 SUPERFAMILY SSF56112 9 329 1.41E-53 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_0157 bd0469b675c6ce72857221fa53810fd4 334 Gene3D G3DSA:3.30.200.20 1 90 2.4E-18 T 13-10-2018 CLM_0157 bd0469b675c6ce72857221fa53810fd4 334 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 13 326 1.2E-110 T 13-10-2018 IPR014255 Spore coat protein CotS CLM_1824 41a69c2b557e8d30ccec533d2b7b0620 243 TIGRFAM TIGR03732 lanti_perm_MutE: lantibiotic protection ABC transporter permease subunit, MutE/EpiE family 3 242 8.6E-96 T 13-10-2018 IPR021205 Lantibiotic ABC transporter permease subunit, SpaE/MutE CLM_0745 0f698d6ec1116d4966f376ab74135e91 164 SUPERFAMILY SSF50475 1 128 3.54E-35 T 13-10-2018 CLM_0745 0f698d6ec1116d4966f376ab74135e91 164 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 126 8.1E-15 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related CLM_0745 0f698d6ec1116d4966f376ab74135e91 164 Gene3D G3DSA:2.30.110.10 1 151 2.8E-37 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_1447 efa4a653e66a6095e4e76d52524327e9 157 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 101 2.7E-23 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_1447 efa4a653e66a6095e4e76d52524327e9 157 Gene3D G3DSA:3.40.140.10 1 157 1.6E-54 T 13-10-2018 CLM_1447 efa4a653e66a6095e4e76d52524327e9 157 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_1447 efa4a653e66a6095e4e76d52524327e9 157 SUPERFAMILY SSF53927 6 150 1.35E-41 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_0799 7dd6a8c2594eab7466fee27f9115a0c3 124 Gene3D G3DSA:1.10.10.10 8 71 2.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0799 7dd6a8c2594eab7466fee27f9115a0c3 124 PIRSF PIRSF019455 2 124 1.1E-40 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 CLM_0799 7dd6a8c2594eab7466fee27f9115a0c3 124 SUPERFAMILY SSF46785 5 121 2.95E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0799 7dd6a8c2594eab7466fee27f9115a0c3 124 Gene3D G3DSA:1.10.4040.10 72 122 7.3E-20 T 13-10-2018 CLM_0799 7dd6a8c2594eab7466fee27f9115a0c3 124 Pfam PF03965 Penicillinase repressor 7 120 4.1E-38 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 CLM_2167 59dbec7fcaeca66031f627bf81664879 223 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2167 59dbec7fcaeca66031f627bf81664879 223 SMART SM00382 33 219 2.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2167 59dbec7fcaeca66031f627bf81664879 223 Gene3D G3DSA:3.40.50.300 1 222 2.4E-60 T 13-10-2018 CLM_2167 59dbec7fcaeca66031f627bf81664879 223 Pfam PF00005 ABC transporter 24 170 6.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2167 59dbec7fcaeca66031f627bf81664879 223 SUPERFAMILY SSF52540 3 219 2.55E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2869 7151330d6ecb7fd9f31b581ca6d97d5f 137 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 136 26.74 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CLM_2869 7151330d6ecb7fd9f31b581ca6d97d5f 137 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 4 133 1.7E-43 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CLM_2869 7151330d6ecb7fd9f31b581ca6d97d5f 137 Gene3D G3DSA:3.30.420.140 1 137 9.9E-51 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 CLM_2869 7151330d6ecb7fd9f31b581ca6d97d5f 137 SUPERFAMILY SSF53098 1 135 1.08E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_2869 7151330d6ecb7fd9f31b581ca6d97d5f 137 Pfam PF03652 Holliday junction resolvase 1 134 3.1E-45 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CLM_2869 7151330d6ecb7fd9f31b581ca6d97d5f 137 SMART SM00732 1 101 1.3E-39 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CLM_2290 3fdee65516500afe6b93172c4c424fb2 114 Pfam PF05105 Bacteriophage holin family 1 109 2.7E-40 T 13-10-2018 IPR006480 Bacteriophage holin family CLM_2290 3fdee65516500afe6b93172c4c424fb2 114 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 3 112 6.4E-28 T 13-10-2018 IPR006480 Bacteriophage holin family CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 SUPERFAMILY SSF161111 25 225 7.06E-52 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 Pfam PF16916 Dimerisation domain of Zinc Transporter 229 304 1.9E-12 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 Gene3D G3DSA:1.20.1510.10 29 224 4.9E-56 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 Gene3D G3DSA:3.30.70.1350 226 307 7.5E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 Pfam PF01545 Cation efflux family 32 224 1.3E-45 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 32 294 4.8E-59 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CLM_3784 9f84608548e646fd0ddfd6a19b60901f 392 SUPERFAMILY SSF160240 227 306 1.57E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CLM_1381 f9f3b016634c176fde8cf65f29c77fe5 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 280 1.1E-34 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1381 f9f3b016634c176fde8cf65f29c77fe5 282 SUPERFAMILY SSF161098 77 264 3.27E-28 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1381 f9f3b016634c176fde8cf65f29c77fe5 282 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 51 4.9E-7 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLM_1381 f9f3b016634c176fde8cf65f29c77fe5 282 Gene3D G3DSA:1.10.3720.10 75 274 3.2E-22 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2830 1dd13e9ee05db9d8c54a02f62b641b42 290 SUPERFAMILY SSF53850 44 287 6.44E-70 T 13-10-2018 CLM_2830 1dd13e9ee05db9d8c54a02f62b641b42 290 Gene3D G3DSA:3.40.190.10 47 285 1.1E-84 T 13-10-2018 CLM_2830 1dd13e9ee05db9d8c54a02f62b641b42 290 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 14 286 4.6E-83 T 13-10-2018 IPR011862 Phosphate binding protein GO:0042301 CLM_2830 1dd13e9ee05db9d8c54a02f62b641b42 290 Pfam PF12849 PBP superfamily domain 37 273 8.8E-40 T 13-10-2018 IPR024370 PBP domain CLM_2830 1dd13e9ee05db9d8c54a02f62b641b42 290 Gene3D G3DSA:3.40.190.10 120 243 1.1E-84 T 13-10-2018 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 SUPERFAMILY SSF102114 27 108 3.53E-11 T 13-10-2018 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 Gene3D G3DSA:3.20.20.70 6 169 3.7E-35 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 ProSitePatterns PS01087 Radical activating enzymes signature. 19 40 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 Pfam PF13353 4Fe-4S single cluster domain 17 155 4.3E-40 T 13-10-2018 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 PIRSF PIRSF000368 1 171 3.5E-54 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 12 157 1.6E-46 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CLM_0138 e7f2c7c44d9064e33e03144490e909cb 171 Pfam PF04055 Radical SAM superfamily 25 111 2.7E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_1554 cd3cba390c1c6182aa46ffcf2489c8b6 312 SMART SM00382 28 212 4.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1554 cd3cba390c1c6182aa46ffcf2489c8b6 312 SUPERFAMILY SSF52540 3 222 8.36E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1554 cd3cba390c1c6182aa46ffcf2489c8b6 312 Pfam PF00005 ABC transporter 19 162 5.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1554 cd3cba390c1c6182aa46ffcf2489c8b6 312 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1554 cd3cba390c1c6182aa46ffcf2489c8b6 312 Gene3D G3DSA:3.40.50.300 1 236 6.9E-68 T 13-10-2018 CLM_1554 cd3cba390c1c6182aa46ffcf2489c8b6 312 Pfam PF13732 Domain of unknown function (DUF4162) 217 305 1.2E-6 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 CLM_1184 09b29713da938a3a9b2a0891aa47522b 69 Gene3D G3DSA:2.30.30.90 1 69 5.5E-16 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain CLM_1184 09b29713da938a3a9b2a0891aa47522b 69 Pfam PF04023 FeoA domain 1 69 1.6E-14 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_1184 09b29713da938a3a9b2a0891aa47522b 69 SMART SM00899 1 69 1.7E-8 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_1184 09b29713da938a3a9b2a0891aa47522b 69 SUPERFAMILY SSF50037 3 69 8.24E-12 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CLM_1982 77cafbe7932de347a06abf37f58f465c 171 Pfam PF00583 Acetyltransferase (GNAT) family 38 144 5.7E-15 T 13-10-2018 IPR000182 GNAT domain CLM_1982 77cafbe7932de347a06abf37f58f465c 171 Gene3D G3DSA:3.40.630.30 1 170 1.9E-45 T 13-10-2018 CLM_1982 77cafbe7932de347a06abf37f58f465c 171 SUPERFAMILY SSF55729 1 156 4.8E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1918 f74e3b3c608cefde32621ceebbb03892 211 Gene3D G3DSA:3.40.50.150 18 209 8.6E-37 T 13-10-2018 CLM_1918 f74e3b3c608cefde32621ceebbb03892 211 Pfam PF08241 Methyltransferase domain 51 150 1.7E-20 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CLM_1918 f74e3b3c608cefde32621ceebbb03892 211 SUPERFAMILY SSF53335 26 201 1.48E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0542 094ef979855d29a0ca876b005dd6961c 252 Pfam PF06738 Putative threonine/serine exporter 9 246 9.4E-70 T 13-10-2018 IPR010619 Putative threonine/serine exporter CLM_1104 f932ef5b4cf2f92d33dcd994e5d07a9d 279 SUPERFAMILY SSF54211 1 141 2.96E-17 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_1104 f932ef5b4cf2f92d33dcd994e5d07a9d 279 PIRSF PIRSF033887 1 276 2.1E-79 T 13-10-2018 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 CLM_1104 f932ef5b4cf2f92d33dcd994e5d07a9d 279 Gene3D G3DSA:3.30.230.10 14 133 5.8E-11 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_1104 f932ef5b4cf2f92d33dcd994e5d07a9d 279 Pfam PF00288 GHMP kinases N terminal domain 74 115 3.3E-7 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CLM_2974 3c6657b8b17dbb9b376bccc437bb2bb2 381 Pfam PF13183 4Fe-4S dicluster domain 22 78 6.0E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_2974 3c6657b8b17dbb9b376bccc437bb2bb2 381 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 65 76 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2974 3c6657b8b17dbb9b376bccc437bb2bb2 381 SUPERFAMILY SSF46548 6 94 3.49E-13 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_2974 3c6657b8b17dbb9b376bccc437bb2bb2 381 Pfam PF02754 Cysteine-rich domain 137 216 1.0E-7 T 13-10-2018 IPR004017 Cysteine-rich domain CLM_2974 3c6657b8b17dbb9b376bccc437bb2bb2 381 Pfam PF02754 Cysteine-rich domain 254 332 1.1E-7 T 13-10-2018 IPR004017 Cysteine-rich domain CLM_2974 3c6657b8b17dbb9b376bccc437bb2bb2 381 Gene3D G3DSA:3.30.70.20 2 83 9.5E-6 T 13-10-2018 CLM_2571 cc28de6ae1aa13da069704dcefb9d492 50 Pfam PF10122 Mu-like prophage protein Com 5 38 1.2E-5 T 13-10-2018 IPR019294 Translational regulator Com CLM_2343 f03c4416864796beea7508408da03442 162 Pfam PF12728 Helix-turn-helix domain 5 54 3.1E-12 T 13-10-2018 CLM_2343 f03c4416864796beea7508408da03442 162 SUPERFAMILY SSF46955 5 54 1.65E-6 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_2343 f03c4416864796beea7508408da03442 162 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 5 53 3.0E-11 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 CLM_2343 f03c4416864796beea7508408da03442 162 Gene3D G3DSA:1.10.1660.10 3 54 7.4E-9 T 13-10-2018 CLM_0317 6373b4e32e2228fb989d57b4b311d511 286 Gene3D G3DSA:3.30.240.20 80 154 1.0E-21 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0317 6373b4e32e2228fb989d57b4b311d511 286 Gene3D G3DSA:3.30.240.20 170 227 3.0E-14 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CLM_0317 6373b4e32e2228fb989d57b4b311d511 286 Pfam PF07870 Protein of unknown function (DUF1657) 237 284 5.5E-16 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 CLM_0317 6373b4e32e2228fb989d57b4b311d511 286 Pfam PF04239 Protein of unknown function (DUF421) 89 204 2.4E-28 T 13-10-2018 IPR007353 Protein of unknown function DUF421 CLM_3134 86cd19474871f12c3e57fcbf33bfdc14 136 Pfam PF04138 GtrA-like protein 12 133 2.0E-10 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 CLM_3390 21056fe0e175491550bac609b19337c1 261 Pfam PF01551 Peptidase family M23 158 252 6.0E-30 T 13-10-2018 IPR016047 Peptidase M23 CLM_3390 21056fe0e175491550bac609b19337c1 261 SUPERFAMILY SSF51261 79 255 1.18E-48 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_3390 21056fe0e175491550bac609b19337c1 261 Gene3D G3DSA:2.70.70.10 109 260 5.1E-44 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 Pfam PF07650 KH domain 38 111 4.3E-20 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 Gene3D G3DSA:3.30.300.20 17 108 2.2E-30 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 207 38.58 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 SUPERFAMILY SSF54814 2 107 4.45E-38 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 Pfam PF00189 Ribosomal protein S3, C-terminal domain 121 203 3.4E-40 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 SUPERFAMILY SSF54821 108 207 4.05E-39 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 8.7E-96 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 ProSitePatterns PS00548 Ribosomal protein S3 signature. 164 198 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 SMART SM00322 60 126 1.4E-10 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CLM_3942 a08917c76a4d4bbc1427d9a6fd2aa276 223 Gene3D G3DSA:3.30.1140.32 109 209 3.4E-43 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_0392 1e7628d830e996e413f2ab53b17773b0 118 Pfam PF03788 LrgA family 14 106 2.1E-31 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 CLM_0918 0d875c2c6edc3241eb84e278a569f9bd 324 Gene3D G3DSA:3.30.572.10 7 239 4.9E-53 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CLM_0918 0d875c2c6edc3241eb84e278a569f9bd 324 SUPERFAMILY SSF55831 3 250 1.96E-51 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CLM_0918 0d875c2c6edc3241eb84e278a569f9bd 324 Pfam PF00303 Thymidylate synthase 53 250 1.6E-18 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CLM_2610 7f865595e90db7fede692dcd5ea37813 368 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 9 362 1.6E-90 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_2610 7f865595e90db7fede692dcd5ea37813 368 Gene3D G3DSA:1.20.1740.10 3 366 7.2E-6 T 13-10-2018 CLM_2610 7f865595e90db7fede692dcd5ea37813 368 Pfam PF03845 Spore germination protein 9 319 1.4E-54 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_3776 f6446da5161017e1362cc23a2d73e502 96 TIGRFAM TIGR04116 CXXX_rpt_assoc: CXXX repeat peptide modification system protein 6 93 7.7E-31 T 13-10-2018 IPR026413 CXXX repeat peptide modification system protein CLM_2244 1a51564edc2b9136e58a2492364da8bf 448 SUPERFAMILY SSF103473 7 429 3.92E-38 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_2244 1a51564edc2b9136e58a2492364da8bf 448 Gene3D G3DSA:1.20.1250.20 216 446 4.4E-39 T 13-10-2018 CLM_2244 1a51564edc2b9136e58a2492364da8bf 448 Gene3D G3DSA:1.20.1250.20 1 215 1.8E-42 T 13-10-2018 CLM_2244 1a51564edc2b9136e58a2492364da8bf 448 Pfam PF07690 Major Facilitator Superfamily 25 392 3.7E-24 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_0548 acb694ac266a35966612714ba62fbf15 297 Gene3D G3DSA:3.90.79.10 6 134 2.7E-20 T 13-10-2018 CLM_0548 acb694ac266a35966612714ba62fbf15 297 Pfam PF00293 NUDIX domain 8 103 1.3E-12 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_0548 acb694ac266a35966612714ba62fbf15 297 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CLM_0548 acb694ac266a35966612714ba62fbf15 297 SUPERFAMILY SSF55811 5 105 1.35E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_0548 acb694ac266a35966612714ba62fbf15 297 PRINTS PR00502 NUDIX hydrolase family signature 33 47 7.9E-8 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_0548 acb694ac266a35966612714ba62fbf15 297 PRINTS PR00502 NUDIX hydrolase family signature 47 62 7.9E-8 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_0877 7d986d5add976d8b598b5bcb2c08d89b 166 SUPERFAMILY SSF51182 2 165 8.01E-59 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_0877 7d986d5add976d8b598b5bcb2c08d89b 166 Gene3D G3DSA:2.60.120.10 1 165 1.6E-62 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0877 7d986d5add976d8b598b5bcb2c08d89b 166 Pfam PF06172 Cupin superfamily (DUF985) 6 143 1.5E-44 T 13-10-2018 IPR009327 Cupin domain of unknown function DUF985 CLM_3248 6e14aaa55a4e2382ed04293ba3d3c4b8 163 Gene3D G3DSA:1.10.357.10 21 163 4.0E-20 T 13-10-2018 CLM_3248 6e14aaa55a4e2382ed04293ba3d3c4b8 163 SUPERFAMILY SSF48498 86 160 2.57E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLM_3144 5c4da30da64e6372785ecf14e5a24942 429 SUPERFAMILY SSF63825 227 404 7.72E-13 T 13-10-2018 CLM_3144 5c4da30da64e6372785ecf14e5a24942 429 Pfam PF16472 Domain of unknown function (DUF5050) 96 369 1.8E-43 T 13-10-2018 IPR032485 Domain of unknown function DUF5050 CLM_3144 5c4da30da64e6372785ecf14e5a24942 429 Gene3D G3DSA:2.120.10.30 95 240 3.7E-6 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_3144 5c4da30da64e6372785ecf14e5a24942 429 SUPERFAMILY SSF63825 104 262 8.24E-9 T 13-10-2018 CLM_3144 5c4da30da64e6372785ecf14e5a24942 429 Gene3D G3DSA:2.120.10.30 275 407 1.7E-6 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_2995 aa6d7d99848a3ee42e7dea67dfbbcc8a 108 SUPERFAMILY SSF81573 17 73 4.19E-6 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CLM_4073 04820113aff017f2c744e3eb62c5c652 83 SUPERFAMILY SSF55021 1 79 3.66E-24 T 13-10-2018 CLM_4073 04820113aff017f2c744e3eb62c5c652 83 Gene3D G3DSA:3.30.70.1150 1 83 1.5E-27 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CLM_4073 04820113aff017f2c744e3eb62c5c652 83 TIGRFAM TIGR03959 hyd_TM1266: putative iron-only hydrogenase system regulator 3 78 1.9E-30 T 13-10-2018 IPR023860 [FeFe]-hydrogenase system regulator TM1266 CLM_2750 4ce37e0a7da6846914865996cc64c025 335 Gene3D G3DSA:3.40.718.10 1 334 5.2E-135 T 13-10-2018 CLM_2750 4ce37e0a7da6846914865996cc64c025 335 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 335 146.322 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CLM_2750 4ce37e0a7da6846914865996cc64c025 335 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 332 1.3E-117 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CLM_2750 4ce37e0a7da6846914865996cc64c025 335 PIRSF PIRSF002465 1 334 2.1E-127 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CLM_2750 4ce37e0a7da6846914865996cc64c025 335 SUPERFAMILY SSF53659 1 332 3.66E-102 T 13-10-2018 CLM_2750 4ce37e0a7da6846914865996cc64c025 335 Pfam PF02504 Fatty acid synthesis protein 1 319 5.1E-114 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 CLM_2687 6a7392982eac2fb7cc8aa0058fb5b3d7 381 Gene3D G3DSA:3.50.50.60 140 379 9.0E-11 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_2687 6a7392982eac2fb7cc8aa0058fb5b3d7 381 Pfam PF01134 Glucose inhibited division protein A 221 307 8.3E-14 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CLM_2687 6a7392982eac2fb7cc8aa0058fb5b3d7 381 Pfam PF01134 Glucose inhibited division protein A 5 175 6.8E-15 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CLM_2687 6a7392982eac2fb7cc8aa0058fb5b3d7 381 SUPERFAMILY SSF51905 18 303 7.88E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1189 2f312bc6b4b6a11ca9248093f55c7e10 266 Gene3D G3DSA:3.30.1380.10 48 263 6.4E-75 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CLM_1189 2f312bc6b4b6a11ca9248093f55c7e10 266 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 115 241 3.4E-42 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 CLM_1189 2f312bc6b4b6a11ca9248093f55c7e10 266 SUPERFAMILY SSF55166 98 250 4.45E-37 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 7.9E-84 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 448 1.3E-62 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 PIRSF PIRSF000538 2 498 2.8E-180 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 Hamap MF_00186 Glycerol kinase [glpK]. 2 495 59.946 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 494 7.8E-231 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 Gene3D G3DSA:3.30.420.40 1 251 8.5E-109 T 13-10-2018 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 SUPERFAMILY SSF53067 253 494 2.85E-86 T 13-10-2018 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 Gene3D G3DSA:3.30.420.40 252 498 3.5E-90 T 13-10-2018 CLM_3150 268e89c6ccdeadc7d767d2833a7d5f7d 498 SUPERFAMILY SSF53067 3 253 1.01E-94 T 13-10-2018 CLM_3193 a03e4a5f7942e064024deea1cca06e10 145 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CLM_3193 a03e4a5f7942e064024deea1cca06e10 145 Pfam PF00293 NUDIX domain 9 133 3.2E-25 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_3193 a03e4a5f7942e064024deea1cca06e10 145 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.5E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_3193 a03e4a5f7942e064024deea1cca06e10 145 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.5E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CLM_3193 a03e4a5f7942e064024deea1cca06e10 145 Gene3D G3DSA:3.90.79.10 2 140 1.2E-35 T 13-10-2018 CLM_3193 a03e4a5f7942e064024deea1cca06e10 145 SUPERFAMILY SSF55811 8 137 8.8E-34 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_1063 f6569d819a1b8cf090c8663209eab8d8 362 Pfam PF00155 Aminotransferase class I and II 16 358 8.7E-35 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1063 f6569d819a1b8cf090c8663209eab8d8 362 SUPERFAMILY SSF53383 11 360 9.85E-64 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1063 f6569d819a1b8cf090c8663209eab8d8 362 Gene3D G3DSA:3.90.1150.10 19 358 7.9E-104 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1063 f6569d819a1b8cf090c8663209eab8d8 362 Gene3D G3DSA:3.40.640.10 29 265 7.9E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0818 5dd6ca636e491b389a014261e1c64ff7 484 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 6 484 58.961 T 13-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 CLM_0818 5dd6ca636e491b389a014261e1c64ff7 484 Gene3D G3DSA:3.40.640.10 85 312 4.1E-61 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0818 5dd6ca636e491b389a014261e1c64ff7 484 Gene3D G3DSA:3.90.1150.10 337 469 7.7E-46 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_0818 5dd6ca636e491b389a014261e1c64ff7 484 SUPERFAMILY SSF53383 29 483 3.55E-109 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0818 5dd6ca636e491b389a014261e1c64ff7 484 Pfam PF02347 Glycine cleavage system P-protein 33 299 1.9E-13 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CLM_2629 95762dfd521d57a1b8911ecf95aa101b 59 Gene3D G3DSA:3.30.920.30 1 59 1.5E-19 T 13-10-2018 IPR038570 HicA superfamily CLM_2629 95762dfd521d57a1b8911ecf95aa101b 59 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 4 58 1.3E-19 T 13-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 CLM_2629 95762dfd521d57a1b8911ecf95aa101b 59 SUPERFAMILY SSF54786 1 59 2.63E-17 T 13-10-2018 CLM_1237 abf4cf428c7c5f35b8da209ede101216 73 SMART SM00899 1 73 1.7E-20 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_1237 abf4cf428c7c5f35b8da209ede101216 73 Gene3D G3DSA:2.30.30.90 1 73 2.3E-22 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain CLM_1237 abf4cf428c7c5f35b8da209ede101216 73 SUPERFAMILY SSF50037 5 71 6.41E-18 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CLM_1237 abf4cf428c7c5f35b8da209ede101216 73 Pfam PF04023 FeoA domain 1 71 1.2E-15 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CLM_0502 9326866ff691afcdece978c3e4735f18 71 Pfam PF04070 Domain of unknown function (DUF378) 2 59 2.6E-28 T 13-10-2018 IPR007211 Protein of unknown function DUF378 CLM_3561 fe16c7f8bbbcb40e1e14261c9e8b5b2c 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 305 4.9E-33 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_3561 fe16c7f8bbbcb40e1e14261c9e8b5b2c 305 Gene3D G3DSA:1.10.3720.10 93 305 1.3E-23 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3561 fe16c7f8bbbcb40e1e14261c9e8b5b2c 305 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 28 75 1.0E-17 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLM_3561 fe16c7f8bbbcb40e1e14261c9e8b5b2c 305 SUPERFAMILY SSF161098 98 287 3.01E-27 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3826 3c1c4b17b0fca3e73c97add75db7ea68 314 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 144 1.7E-30 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CLM_3826 3c1c4b17b0fca3e73c97add75db7ea68 314 Pfam PF04657 Putative inner membrane exporter, YdcZ 168 309 1.5E-37 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CLM_0219 96ef837da20d9a96871149f5e1e4a2a3 225 SUPERFAMILY SSF53271 70 220 3.84E-25 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_0219 96ef837da20d9a96871149f5e1e4a2a3 225 Pfam PF00156 Phosphoribosyl transferase domain 133 219 2.9E-6 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_0219 96ef837da20d9a96871149f5e1e4a2a3 225 Gene3D G3DSA:3.40.50.2020 92 223 1.7E-19 T 13-10-2018 CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 SUPERFAMILY SSF51430 1 317 5.24E-66 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 Gene3D G3DSA:1.10.1060.10 288 376 8.8E-10 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 349 360 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 Pfam PF13534 4Fe-4S dicluster domain 298 363 2.1E-10 T 13-10-2018 CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 Gene3D G3DSA:3.20.20.100 1 287 3.2E-63 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 SUPERFAMILY SSF46548 288 370 1.52E-11 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_1744 eaf39eb79d79397fd0b1233d49691025 378 Pfam PF00248 Aldo/keto reductase family 16 269 5.4E-37 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 Pfam PF00152 tRNA synthetases class II (D, K and N) 118 457 5.3E-87 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 Gene3D G3DSA:2.40.50.140 3 105 1.3E-19 T 13-10-2018 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 463 46.48 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 Gene3D G3DSA:3.30.930.10 106 462 8.3E-115 T 13-10-2018 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 SUPERFAMILY SSF55681 104 461 9.3E-98 T 13-10-2018 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 Pfam PF01336 OB-fold nucleic acid binding domain 21 98 7.2E-10 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 PRINTS PR01042 Aspartyl-tRNA synthetase signature 378 394 1.1E-12 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 PRINTS PR01042 Aspartyl-tRNA synthetase signature 418 432 1.1E-12 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 PRINTS PR01042 Aspartyl-tRNA synthetase signature 205 217 1.1E-12 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 PRINTS PR01042 Aspartyl-tRNA synthetase signature 221 234 1.1E-12 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 463 2.0E-192 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 CLM_0706 bb8b9ab1d94e2a891fccc9a5eec7ed3b 463 SUPERFAMILY SSF50249 13 102 4.95E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_1410 f9732d3308c70a0be3e80d55699b7267 75 Gene3D G3DSA:3.40.30.10 1 75 1.6E-24 T 13-10-2018 CLM_1410 f9732d3308c70a0be3e80d55699b7267 75 TIGRFAM TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family 1 74 5.8E-31 T 13-10-2018 IPR011911 Glutaredoxin-like protein, YruB CLM_1410 f9732d3308c70a0be3e80d55699b7267 75 SUPERFAMILY SSF52833 1 73 2.23E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_1410 f9732d3308c70a0be3e80d55699b7267 75 Pfam PF00462 Glutaredoxin 2 60 8.9E-18 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CLM_1410 f9732d3308c70a0be3e80d55699b7267 75 ProSitePatterns PS00195 Glutaredoxin active site. 4 20 - T 13-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 CLM_0393 48c319d0284d1583558e2941e9677d37 231 Pfam PF04172 LrgB-like family 16 228 1.2E-78 T 13-10-2018 IPR007300 CidB/LrgB family CLM_1959 55fb5a8b19c5b3fd9bebd1c080c5a15b 396 SUPERFAMILY SSF53383 2 395 1.14E-111 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1959 55fb5a8b19c5b3fd9bebd1c080c5a15b 396 Gene3D G3DSA:3.90.1150.10 17 391 2.7E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1959 55fb5a8b19c5b3fd9bebd1c080c5a15b 396 Gene3D G3DSA:3.40.640.10 64 286 2.7E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1959 55fb5a8b19c5b3fd9bebd1c080c5a15b 396 Pfam PF00155 Aminotransferase class I and II 50 387 1.9E-39 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_0968 12462c9ff71f757d426dfbc607406933 450 Pfam PF07833 Copper amine oxidase N-terminal domain 81 166 2.8E-6 T 13-10-2018 IPR012854 Copper amine oxidase-like, N-terminal CLM_0968 12462c9ff71f757d426dfbc607406933 450 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 189 436 1.2E-57 T 13-10-2018 IPR018763 Protein of unknown function DUF2334 CLM_0947 9ca875993d64f3c7c7932cf9684f283f 482 SUPERFAMILY SSF56601 27 364 2.03E-70 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_0947 9ca875993d64f3c7c7932cf9684f283f 482 Gene3D G3DSA:3.40.710.10 32 368 5.0E-84 T 13-10-2018 CLM_0947 9ca875993d64f3c7c7932cf9684f283f 482 Pfam PF00144 Beta-lactamase 44 365 1.5E-57 T 13-10-2018 IPR001466 Beta-lactamase-related CLM_3657 45814d50898fe0a7855960fdab2c9c09 419 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 76 419 2.6E-91 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3657 45814d50898fe0a7855960fdab2c9c09 419 Gene3D G3DSA:3.40.50.11900 273 419 1.2E-48 T 13-10-2018 CLM_3657 45814d50898fe0a7855960fdab2c9c09 419 Gene3D G3DSA:1.20.1270.370 59 260 1.2E-38 T 13-10-2018 CLM_3657 45814d50898fe0a7855960fdab2c9c09 419 Gene3D G3DSA:3.40.50.11890 69 194 1.2E-38 T 13-10-2018 CLM_2204 4d7f0f6b1ced1f11a7936ad92ab99cc0 475 Pfam PF02378 Phosphotransferase system, EIIC 111 409 1.0E-35 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_2204 4d7f0f6b1ced1f11a7936ad92ab99cc0 475 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_2204 4d7f0f6b1ced1f11a7936ad92ab99cc0 475 Pfam PF00367 phosphotransferase system, EIIB 9 42 3.3E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CLM_2204 4d7f0f6b1ced1f11a7936ad92ab99cc0 475 Gene3D G3DSA:3.30.1360.60 1 77 1.7E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_2204 4d7f0f6b1ced1f11a7936ad92ab99cc0 475 SUPERFAMILY SSF55604 8 81 1.96E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CLM_2204 4d7f0f6b1ced1f11a7936ad92ab99cc0 475 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 466 9.3E-213 T 13-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 CLM_2908 133d24e00044d4263a2f290dc21853c9 158 Pfam PF16224 DOmain of unknown function (DUF4883) 34 152 1.1E-45 T 13-10-2018 IPR032619 Protein of unknown function DUF4883 CLM_2908 133d24e00044d4263a2f290dc21853c9 158 Gene3D G3DSA:3.30.1490.410 31 158 1.7E-45 T 13-10-2018 CLM_3184 782be716b4ba27bb3ed8be224de8120a 182 Gene3D G3DSA:3.40.50.2020 2 179 2.0E-60 T 13-10-2018 CLM_3184 782be716b4ba27bb3ed8be224de8120a 182 SUPERFAMILY SSF53271 6 170 3.28E-44 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3184 782be716b4ba27bb3ed8be224de8120a 182 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 4 177 36.978 T 13-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CLM_3184 782be716b4ba27bb3ed8be224de8120a 182 Pfam PF00156 Phosphoribosyl transferase domain 12 147 3.9E-24 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_0287 5fc047e6e11d2915f945176767feb8b2 443 Gene3D G3DSA:3.30.43.10 6 84 2.0E-25 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CLM_0287 5fc047e6e11d2915f945176767feb8b2 443 Pfam PF01565 FAD binding domain 33 163 1.3E-29 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CLM_0287 5fc047e6e11d2915f945176767feb8b2 443 Pfam PF08031 Berberine and berberine like 392 435 2.7E-17 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 CLM_0287 5fc047e6e11d2915f945176767feb8b2 443 SUPERFAMILY SSF56176 4 198 1.73E-54 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CLM_0287 5fc047e6e11d2915f945176767feb8b2 443 Gene3D G3DSA:3.40.462.20 200 389 2.4E-97 T 13-10-2018 CLM_0287 5fc047e6e11d2915f945176767feb8b2 443 Gene3D G3DSA:3.30.465.50 92 434 2.4E-97 T 13-10-2018 CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 2.1E-19 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 Gene3D G3DSA:3.40.50.300 1 332 1.4E-99 T 13-10-2018 CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 SMART SM00382 33 234 1.2E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 321 5.7E-27 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 Pfam PF00005 ABC transporter 25 184 2.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3560 ff4de783102262ec33eb3e551fc644b4 339 SUPERFAMILY SSF52540 32 322 1.62E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3847 c217806ef5b7a32db5c62cc116436093 145 Gene3D G3DSA:2.60.200.20 31 145 1.4E-25 T 13-10-2018 CLM_3847 c217806ef5b7a32db5c62cc116436093 145 SMART SM00240 72 122 4.1E-11 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 CLM_3847 c217806ef5b7a32db5c62cc116436093 145 Pfam PF00498 FHA domain 73 137 7.5E-17 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 CLM_3847 c217806ef5b7a32db5c62cc116436093 145 SUPERFAMILY SSF49879 66 144 7.27E-24 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 CLM_3734 96bc6802d35434a1699c8073506b350a 244 Pfam PF09335 SNARE associated Golgi protein 84 202 2.5E-28 T 13-10-2018 IPR032816 SNARE associated Golgi protein CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 SUPERFAMILY SSF53328 6 209 1.96E-62 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 SUPERFAMILY SSF50486 207 311 4.4E-31 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 303 5.5E-96 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 Pfam PF00551 Formyl transferase 10 182 4.7E-40 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 Pfam PF02911 Formyl transferase, C-terminal domain 207 303 7.1E-29 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 Gene3D G3DSA:3.10.25.10 209 313 2.7E-33 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 Gene3D G3DSA:3.40.50.170 2 208 2.0E-75 T 13-10-2018 CLM_2809 1d8b7bfc00a971d40b44f3665427b710 313 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 306 35.108 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CLM_2580 1b3439283dff189ff61a0432b8d2ea50 55 SUPERFAMILY SSF140500 5 54 3.53E-10 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_2580 1b3439283dff189ff61a0432b8d2ea50 55 Pfam PF09388 Spo0E like sporulation regulatory protein 7 49 5.6E-11 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 CLM_3618 5d4074b961b5e4ceee8022e08c9b9cad 298 Pfam PF01966 HD domain 149 268 4.0E-14 T 13-10-2018 IPR006674 HD domain CLM_3618 5d4074b961b5e4ceee8022e08c9b9cad 298 TIGRFAM TIGR00277 HDIG: HDIG domain 147 242 8.4E-10 T 13-10-2018 IPR006675 HDIG domain CLM_3618 5d4074b961b5e4ceee8022e08c9b9cad 298 SMART SM00471 144 278 2.7E-8 T 13-10-2018 IPR003607 HD/PDEase domain CLM_3618 5d4074b961b5e4ceee8022e08c9b9cad 298 Gene3D G3DSA:1.10.3210.10 121 293 8.0E-17 T 13-10-2018 CLM_3618 5d4074b961b5e4ceee8022e08c9b9cad 298 SUPERFAMILY SSF109604 127 267 2.88E-19 T 13-10-2018 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Gene3D G3DSA:3.30.70.20 134 193 1.4E-14 T 13-10-2018 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 172 183 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 SUPERFAMILY SSF46548 136 262 3.92E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 194 29.77 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Pfam PF00037 4Fe-4S binding domain 239 261 3.3E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Pfam PF00037 4Fe-4S binding domain 166 187 1.6E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Gene3D G3DSA:3.30.70.20 211 263 2.7E-13 T 13-10-2018 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Gene3D G3DSA:3.20.20.20 36 104 1.6E-12 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 96 6.7E-25 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 246 257 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_0441 2d45c5ec5ac77bcdf46096c04b0e3fa0 277 Pfam PF04060 Putative Fe-S cluster 44 76 2.5E-13 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 SUPERFAMILY SSF53623 111 295 6.11E-42 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 SUPERFAMILY SSF51984 15 105 3.14E-14 T 13-10-2018 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 Gene3D G3DSA:3.40.1190.10 107 309 1.8E-56 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 SUPERFAMILY SSF53244 313 458 2.78E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 Gene3D G3DSA:3.40.50.720 12 104 1.7E-16 T 13-10-2018 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 16 456 7.9E-111 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 15 458 31.367 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 Gene3D G3DSA:3.90.190.20 319 458 6.5E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CLM_4002 548ed2480c07c4206fa38d8bc20260d8 458 Pfam PF08245 Mur ligase middle domain 122 294 1.1E-35 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 Gene3D G3DSA:3.40.250.10 1 144 1.4E-40 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 Pfam PF00581 Rhodanese-like domain 164 269 1.7E-8 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 Pfam PF00581 Rhodanese-like domain 6 126 2.3E-20 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 SUPERFAMILY SSF52821 4 136 3.27E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 SUPERFAMILY SSF52821 157 277 8.64E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 SMART SM00450 160 274 1.0E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 SMART SM00450 5 131 2.9E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_0943 f7a30ff6c713d8d2feed18d721b78731 279 Gene3D G3DSA:3.40.250.10 162 279 2.9E-26 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1296 578e6b491a928c13f1a6737013098767 193 Pfam PF12983 Protein of unknown function (DUF3867) 3 193 4.9E-77 T 13-10-2018 IPR024218 Protein of unknown function DUF3867 CLM_2504 a061d6b60dfab9aa06c690086e675dbf 388 Pfam PF12571 Phage tail-collar fibre protein 2 149 2.9E-58 T 13-10-2018 IPR022225 Phage tail fibre protein CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 Pfam PF04055 Radical SAM superfamily 14 175 2.8E-32 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 1 319 37.015 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 SUPERFAMILY SSF102114 3 279 4.97E-74 T 13-10-2018 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 Pfam PF13353 4Fe-4S single cluster domain 17 120 1.1E-7 T 13-10-2018 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 Gene3D G3DSA:3.20.20.70 1 319 1.9E-94 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 Pfam PF06463 Molybdenum Cofactor Synthesis C 181 301 7.4E-32 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 16 27 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 SMART SM00729 10 214 1.5E-11 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_2157 9a3abe1ad11f624c93a8f3381e56ccae 319 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 1 319 1.8E-113 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CLM_2740 66a59418ccfea3018920df3175f7827e 75 Pfam PF13083 KH domain 2 74 6.7E-25 T 13-10-2018 CLM_2740 66a59418ccfea3018920df3175f7827e 75 SUPERFAMILY SSF54814 6 61 3.2E-8 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CLM_2740 66a59418ccfea3018920df3175f7827e 75 Gene3D G3DSA:3.30.300.20 5 72 5.0E-5 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CLM_2740 66a59418ccfea3018920df3175f7827e 75 Hamap MF_00088 UPF0109 protein . 1 75 23.746 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 Gene3D G3DSA:2.40.330.20 12 155 2.9E-55 T 13-10-2018 IPR038619 MraZ superfamily CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 15 151 2.0E-60 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 156 54.896 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 15 154 4.6E-49 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 Pfam PF02381 MraZ protein, putative antitoxin-like 15 84 3.4E-20 T 13-10-2018 IPR020603 MraZ domain CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 Pfam PF02381 MraZ protein, putative antitoxin-like 86 143 5.8E-18 T 13-10-2018 IPR020603 MraZ domain CLM_1690 f99f2a8f37851b7e45fbc0bee1b37293 156 SUPERFAMILY SSF89447 14 145 1.64E-51 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily CLM_3610 88b49b4a8188aad3472653c85fe2b0aa 259 PIRSF PIRSF000090 1 259 6.8E-99 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CLM_3610 88b49b4a8188aad3472653c85fe2b0aa 259 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CLM_3610 88b49b4a8188aad3472653c85fe2b0aa 259 SUPERFAMILY SSF52402 1 253 1.05E-83 T 13-10-2018 CLM_3610 88b49b4a8188aad3472653c85fe2b0aa 259 Pfam PF01012 Electron transfer flavoprotein domain 23 206 1.2E-53 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_3610 88b49b4a8188aad3472653c85fe2b0aa 259 Gene3D G3DSA:3.40.50.620 1 258 1.7E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3610 88b49b4a8188aad3472653c85fe2b0aa 259 SMART SM00893 22 211 4.5E-68 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CLM_1450 7940e81ce3a0f123c3e2288b8d92eee6 78 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 7 72 2.4E-22 T 13-10-2018 IPR018680 Protein of unknown function DUF2164 CLM_0735 fb3d53be5462fb5b20d2f56fc8133165 281 Pfam PF00005 ABC transporter 20 160 4.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0735 fb3d53be5462fb5b20d2f56fc8133165 281 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0735 fb3d53be5462fb5b20d2f56fc8133165 281 SMART SM00382 29 207 1.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0735 fb3d53be5462fb5b20d2f56fc8133165 281 SUPERFAMILY SSF52540 3 219 1.41E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0735 fb3d53be5462fb5b20d2f56fc8133165 281 Gene3D G3DSA:3.40.50.300 1 238 6.3E-68 T 13-10-2018 CLM_0963 1fe2f5864e5579af7dd4b4aef6924a0c 248 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 8 244 7.4E-46 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CLM_0963 1fe2f5864e5579af7dd4b4aef6924a0c 248 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 248 42.522 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CLM_0963 1fe2f5864e5579af7dd4b4aef6924a0c 248 Pfam PF02654 Cobalamin-5-phosphate synthase 12 243 1.0E-53 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CLM_2557 0d6866b9133eaaed40fc215661b6020d 126 SUPERFAMILY SSF101386 58 118 1.96E-10 T 13-10-2018 CLM_2557 0d6866b9133eaaed40fc215661b6020d 126 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 62 118 6.0E-6 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLM_2557 0d6866b9133eaaed40fc215661b6020d 126 Gene3D G3DSA:1.10.287.1080 29 124 8.1E-10 T 13-10-2018 CLM_2238 7ed5a5241f1ba5e33237aeb5e9d2a754 221 SUPERFAMILY SSF52777 1 213 3.5E-69 T 13-10-2018 CLM_2238 7ed5a5241f1ba5e33237aeb5e9d2a754 221 Gene3D G3DSA:3.30.559.10 2 211 7.9E-68 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CLM_2238 7ed5a5241f1ba5e33237aeb5e9d2a754 221 PIRSF PIRSF000440 1 217 5.4E-77 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_2238 7ed5a5241f1ba5e33237aeb5e9d2a754 221 Pfam PF00302 Chloramphenicol acetyltransferase 3 208 1.5E-81 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_2238 7ed5a5241f1ba5e33237aeb5e9d2a754 221 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 9 206 6.0E-69 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_2238 7ed5a5241f1ba5e33237aeb5e9d2a754 221 SMART SM01059 1 208 6.0E-115 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CLM_2890 1688aad9c30eddf2a70d82a34ca4d43b 91 SUPERFAMILY SSF47336 11 81 5.23E-11 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2890 1688aad9c30eddf2a70d82a34ca4d43b 91 Gene3D G3DSA:1.10.1200.10 1 84 1.0E-9 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2890 1688aad9c30eddf2a70d82a34ca4d43b 91 Pfam PF00550 Phosphopantetheine attachment site 13 77 8.2E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_3946 55a25d8909c1ccc44967dcc2754d2b83 97 Gene3D G3DSA:3.30.70.330 3 97 1.9E-32 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLM_3946 55a25d8909c1ccc44967dcc2754d2b83 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 6 96 21.941 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CLM_3946 55a25d8909c1ccc44967dcc2754d2b83 97 SUPERFAMILY SSF54189 6 96 4.68E-32 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3946 55a25d8909c1ccc44967dcc2754d2b83 97 Pfam PF00276 Ribosomal protein L23 7 90 8.7E-31 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CLM_3946 55a25d8909c1ccc44967dcc2754d2b83 97 ProSitePatterns PS00050 Ribosomal protein L23 signature. 78 93 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 SUPERFAMILY SSF88697 2 70 1.29E-15 T 13-10-2018 IPR015947 PUA-like superfamily CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 4 248 8.2E-64 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 PIRSF PIRSF015601 1 248 2.5E-68 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 Gene3D G3DSA:3.40.1280.10 72 251 2.9E-61 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 Pfam PF04452 RNA methyltransferase 17 243 1.4E-74 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 SUPERFAMILY SSF75217 72 248 6.98E-52 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CLM_3351 e5787d0b6afbe5131dbed11658f1ceaa 252 Gene3D G3DSA:2.40.240.20 1 70 1.4E-20 T 13-10-2018 CLM_0529 7b7f5e7b57a530a06448a5a184382a39 242 Gene3D G3DSA:3.40.50.150 68 241 4.0E-29 T 13-10-2018 CLM_0529 7b7f5e7b57a530a06448a5a184382a39 242 Pfam PF13649 Methyltransferase domain 89 196 9.6E-19 T 13-10-2018 CLM_0529 7b7f5e7b57a530a06448a5a184382a39 242 SUPERFAMILY SSF53335 73 221 7.6E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3098 7fb0069c05a0063271f80f63ff3b44d9 113 Pfam PF05400 Flagellar protein FliT 19 98 1.2E-8 T 13-10-2018 IPR008622 Flagellar protein FliT CLM_0992 8b2de1c1ab176f2d25e397c5dedb618c 189 Gene3D G3DSA:3.40.50.360 1 189 4.6E-46 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0992 8b2de1c1ab176f2d25e397c5dedb618c 189 SUPERFAMILY SSF52218 2 185 4.69E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0992 8b2de1c1ab176f2d25e397c5dedb618c 189 Pfam PF02525 Flavodoxin-like fold 2 181 2.4E-32 T 13-10-2018 IPR003680 Flavodoxin-like fold CLM_3821 73098aae981597661a8903a747acc515 312 Gene3D G3DSA:3.40.50.720 1 310 3.1E-42 T 13-10-2018 CLM_3821 73098aae981597661a8903a747acc515 312 SUPERFAMILY SSF51735 1 309 3.05E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3821 73098aae981597661a8903a747acc515 312 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 231 7.5E-15 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 36 44 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 52 2.9E-4 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Pfam PF01799 [2Fe-2S] binding domain 70 141 2.4E-23 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 TIGRFAM TIGR03311 Se_dep_XDH: selenium-dependent xanthine dehydrogenase 2 849 0.0 T 13-10-2018 IPR017697 Selenium-dependent xanthine dehydrogenase CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 302 792 7.2E-116 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Gene3D G3DSA:1.10.150.120 78 150 5.1E-25 T 13-10-2018 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 SUPERFAMILY SSF54665 162 304 1.07E-36 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 SUPERFAMILY SSF54292 7 75 1.31E-18 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Gene3D G3DSA:3.10.20.30 2 75 1.3E-20 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 SMART SM01008 177 285 1.7E-36 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Gene3D G3DSA:3.30.365.10 151 843 1.5E-183 T 13-10-2018 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 179 285 8.6E-24 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 SUPERFAMILY SSF56003 277 842 2.75E-148 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 CLM_3277 b5affcde4fe4917b9a32d9fb8c7d0999 851 SUPERFAMILY SSF47741 70 153 3.01E-26 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily CLM_1203 aa6d2e3e4e93f5eb5faabaf4a0e5e9ee 251 SUPERFAMILY SSF52540 1 226 6.37E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1203 aa6d2e3e4e93f5eb5faabaf4a0e5e9ee 251 Pfam PF00005 ABC transporter 18 164 2.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1203 aa6d2e3e4e93f5eb5faabaf4a0e5e9ee 251 Gene3D G3DSA:3.40.50.300 1 250 8.2E-68 T 13-10-2018 CLM_1203 aa6d2e3e4e93f5eb5faabaf4a0e5e9ee 251 SMART SM00382 26 213 4.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 Pfam PF02629 CoA binding domain 83 179 1.1E-23 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 Gene3D G3DSA:1.10.10.10 1 77 3.1E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 Pfam PF06971 Putative DNA-binding protein N-terminus 6 54 7.3E-21 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 SUPERFAMILY SSF51735 82 207 3.35E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 2 210 36.211 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 Gene3D G3DSA:3.40.50.720 78 210 1.7E-49 T 13-10-2018 CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 SUPERFAMILY SSF46785 10 80 1.32E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3740 5abc5b89cab047b4cf2c38faaadb0ca2 210 SMART SM00881 81 181 4.6E-20 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CLM_4058 0239ec7463446080a5abe1216765e3ad 417 Gene3D G3DSA:3.65.10.10 20 231 1.7E-165 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CLM_4058 0239ec7463446080a5abe1216765e3ad 417 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 42.354 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_4058 0239ec7463446080a5abe1216765e3ad 417 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 5.6E-168 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CLM_4058 0239ec7463446080a5abe1216765e3ad 417 SUPERFAMILY SSF55205 1 416 3.6E-134 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CLM_4058 0239ec7463446080a5abe1216765e3ad 417 Gene3D G3DSA:3.65.10.10 6 414 1.7E-165 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CLM_4058 0239ec7463446080a5abe1216765e3ad 417 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 406 3.0E-96 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 Hamap MF_00242 Arginine deiminase [arcA]. 4 402 45.058 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PIRSF PIRSF006356 1 402 3.4E-163 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PRINTS PR01466 Bacterial arginine deiminase signature 381 399 2.3E-58 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PRINTS PR01466 Bacterial arginine deiminase signature 338 355 2.3E-58 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PRINTS PR01466 Bacterial arginine deiminase signature 175 190 2.3E-58 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PRINTS PR01466 Bacterial arginine deiminase signature 358 372 2.3E-58 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PRINTS PR01466 Bacterial arginine deiminase signature 5 25 2.3E-58 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 PRINTS PR01466 Bacterial arginine deiminase signature 147 165 2.3E-58 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 Gene3D G3DSA:3.75.10.10 8 397 5.9E-154 T 13-10-2018 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 Gene3D G3DSA:1.10.3930.10 71 147 5.9E-154 T 13-10-2018 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 TIGRFAM TIGR01078 arcA: arginine deiminase 7 401 8.1E-160 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 SUPERFAMILY SSF55909 5 402 1.18E-128 T 13-10-2018 CLM_0109 78ca4c48eec84cfc43598f763beca405 403 Pfam PF02274 Amidinotransferase 21 399 1.5E-99 T 13-10-2018 CLM_2874 394bc9c2ce7a1e9b163ade32b062a52d 142 Pfam PF01592 NifU-like N terminal domain 1 119 5.8E-51 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CLM_2874 394bc9c2ce7a1e9b163ade32b062a52d 142 SUPERFAMILY SSF82649 4 121 1.07E-47 T 13-10-2018 CLM_2874 394bc9c2ce7a1e9b163ade32b062a52d 142 TIGRFAM TIGR03419 NifU_clost: FeS cluster assembly scaffold protein NifU 2 121 1.1E-70 T 13-10-2018 IPR017787 NIF system FeS cluster assembly, NifU-like CLM_2874 394bc9c2ce7a1e9b163ade32b062a52d 142 Gene3D G3DSA:3.90.1010.10 1 141 5.3E-61 T 13-10-2018 CLM_0723 fac5d1b6f20cde0bf2aeb70baa6a0841 386 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 332 356 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_0723 fac5d1b6f20cde0bf2aeb70baa6a0841 386 Pfam PF01098 Cell cycle protein 26 371 7.4E-103 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_0723 fac5d1b6f20cde0bf2aeb70baa6a0841 386 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 23 374 3.2E-118 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_0723 fac5d1b6f20cde0bf2aeb70baa6a0841 386 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 17 377 28.462 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_2957 ea7f6744eece130d4f63fd76a932cbbd 218 Gene3D G3DSA:1.10.260.40 10 93 7.9E-11 T 13-10-2018 CLM_2957 ea7f6744eece130d4f63fd76a932cbbd 218 Pfam PF12844 Helix-turn-helix domain 10 58 5.5E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2957 ea7f6744eece130d4f63fd76a932cbbd 218 SMART SM00530 3 58 6.6E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2957 ea7f6744eece130d4f63fd76a932cbbd 218 SUPERFAMILY SSF47413 11 60 1.56E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 Pfam PF00746 LPXTG cell wall anchor motif 874 907 1.4E-4 T 13-10-2018 IPR019948 Gram-positive LPXTG cell wall anchor CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 SUPERFAMILY SSF89550 493 711 7.46E-27 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 Gene3D G3DSA:2.60.40.1120 297 398 2.1E-12 T 13-10-2018 CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 SUPERFAMILY SSF49464 296 411 2.94E-13 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 Pfam PF13620 Carboxypeptidase regulatory-like domain 297 387 9.3E-10 T 13-10-2018 CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 874 908 8.3E-5 T 13-10-2018 CLM_2345 ddf0220c2e6c1dd0ceb2b6d84a0de80a 909 Gene3D G3DSA:3.20.20.140 492 710 5.2E-23 T 13-10-2018 CLM_2401 c9b6d42b6eea3d151c05697e5e333cf1 273 Gene3D G3DSA:3.40.50.360 5 156 3.5E-12 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2401 c9b6d42b6eea3d151c05697e5e333cf1 273 SUPERFAMILY SSF54862 200 258 2.06E-13 T 13-10-2018 CLM_2401 c9b6d42b6eea3d151c05697e5e333cf1 273 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 203 214 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLM_2401 c9b6d42b6eea3d151c05697e5e333cf1 273 SUPERFAMILY SSF52218 6 159 2.25E-16 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_0417 78b1bbc4d2226706d677f64f8a2c0b4d 336 Pfam PF03984 Repeat of unknown function (DUF346) 142 175 1.9E-9 T 13-10-2018 IPR007132 Protein of unknown function DUF346 CLM_0417 78b1bbc4d2226706d677f64f8a2c0b4d 336 Pfam PF03984 Repeat of unknown function (DUF346) 187 220 2.3E-8 T 13-10-2018 IPR007132 Protein of unknown function DUF346 CLM_0417 78b1bbc4d2226706d677f64f8a2c0b4d 336 Pfam PF03984 Repeat of unknown function (DUF346) 231 266 4.5E-9 T 13-10-2018 IPR007132 Protein of unknown function DUF346 CLM_0417 78b1bbc4d2226706d677f64f8a2c0b4d 336 Gene3D G3DSA:2.120.10.70 52 269 2.7E-9 T 13-10-2018 CLM_0417 78b1bbc4d2226706d677f64f8a2c0b4d 336 SUPERFAMILY SSF89372 69 264 8.5E-47 T 13-10-2018 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 38.511 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 SUPERFAMILY SSF56053 84 178 3.45E-36 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 SUPERFAMILY SSF56053 1 83 1.99E-25 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 Gene3D G3DSA:3.90.930.12 84 179 4.5E-40 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 Gene3D G3DSA:3.90.930.12 1 83 6.3E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 PIRSF PIRSF002162 1 178 2.1E-46 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 2.1E-75 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 PRINTS PR00059 Ribosomal protein L6 signature 100 116 2.0E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 PRINTS PR00059 Ribosomal protein L6 signature 142 163 2.0E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 PRINTS PR00059 Ribosomal protein L6 signature 72 97 2.0E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 Pfam PF00347 Ribosomal protein L6 11 83 1.7E-18 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3933 dab0fd8bb794ca5ba961b6135a9b2d85 180 Pfam PF00347 Ribosomal protein L6 91 165 2.7E-20 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 Gene3D G3DSA:3.50.50.60 4 298 1.6E-79 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 4.1E-11 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 4.1E-11 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 4.1E-11 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 4.1E-11 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 SUPERFAMILY SSF51905 1 300 8.11E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1508 1b959466729b5b5fd701f741e87064c1 408 Gene3D G3DSA:3.50.50.60 110 237 1.6E-79 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1508 1b959466729b5b5fd701f741e87064c1 408 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 290 1.3E-53 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 8.8E-19 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 8.8E-19 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 8.8E-19 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 8.8E-19 T 13-10-2018 CLM_1508 1b959466729b5b5fd701f741e87064c1 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 8.8E-19 T 13-10-2018 CLM_4101 e42b167f9dea7a98b8d60a5d4c223349 325 Pfam PF01695 IstB-like ATP binding protein 156 289 6.6E-19 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CLM_4101 e42b167f9dea7a98b8d60a5d4c223349 325 Gene3D G3DSA:3.40.50.300 133 325 6.6E-35 T 13-10-2018 CLM_4101 e42b167f9dea7a98b8d60a5d4c223349 325 SUPERFAMILY SSF52540 153 309 1.34E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 13-10-2018 IPR020845 AMP-binding, conserved site CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 Gene3D G3DSA:3.40.50.12780 32 421 3.4E-74 T 13-10-2018 CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 Pfam PF00550 Phosphopantetheine attachment site 543 607 2.4E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 Gene3D G3DSA:3.30.300.30 424 526 5.0E-15 T 13-10-2018 CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 PRINTS PR00154 AMP-binding signature 191 199 8.9E-5 T 13-10-2018 IPR020459 AMP-binding CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 PRINTS PR00154 AMP-binding signature 179 190 8.9E-5 T 13-10-2018 IPR020459 AMP-binding CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 SUPERFAMILY SSF56801 30 521 8.9E-89 T 13-10-2018 CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 Pfam PF00501 AMP-binding enzyme 44 429 1.6E-58 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 Gene3D G3DSA:1.10.1200.10 537 607 4.9E-10 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2894 676eadc4c4152ba63b5127af44d4c3cb 609 SUPERFAMILY SSF47336 538 607 1.83E-12 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2510 ddbcdc6c49dabae5368e892572946da2 229 Gene3D G3DSA:3.10.350.10 180 228 8.0E-11 T 13-10-2018 IPR036779 LysM domain superfamily CLM_2510 ddbcdc6c49dabae5368e892572946da2 229 SUPERFAMILY SSF54106 179 228 3.92E-6 T 13-10-2018 CLM_2510 ddbcdc6c49dabae5368e892572946da2 229 Pfam PF01476 LysM domain 181 228 2.2E-7 T 13-10-2018 IPR018392 LysM domain CLM_1300 abb4308690828e99e3defb31379356c1 109 SUPERFAMILY SSF101386 1 99 3.27E-21 T 13-10-2018 CLM_1300 abb4308690828e99e3defb31379356c1 109 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 31 99 3.5E-14 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLM_1300 abb4308690828e99e3defb31379356c1 109 Gene3D G3DSA:1.10.287.1080 2 108 1.6E-15 T 13-10-2018 CLM_1300 abb4308690828e99e3defb31379356c1 109 PIRSF PIRSF006639 1 108 2.5E-29 T 13-10-2018 IPR011379 NTP Pyrophosphohydrolase MazG-related, GP37 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 SUPERFAMILY SSF58104 211 545 2.09E-63 T 13-10-2018 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 SMART SM00304 191 243 3.8E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 Gene3D G3DSA:3.30.450.20 43 153 2.9E-8 T 13-10-2018 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 SUPERFAMILY SSF103190 44 165 1.37E-13 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 499 7.8E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 Gene3D G3DSA:1.20.1480.50 156 247 1.1E-10 T 13-10-2018 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 SMART SM00283 272 547 1.2E-61 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 Gene3D G3DSA:1.10.287.950 248 547 2.6E-61 T 13-10-2018 CLM_2217 eec73db05d4787379fa21de9ab0af1f8 549 Pfam PF00672 HAMP domain 191 236 3.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_1131 8679b896655d146e566485f63ebb0add 586 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 378 581 7.7E-42 T 13-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 CLM_1131 8679b896655d146e566485f63ebb0add 586 SUPERFAMILY SSF82549 1 331 3.66E-121 T 13-10-2018 CLM_1131 8679b896655d146e566485f63ebb0add 586 Gene3D G3DSA:3.30.1180.20 183 332 4.0E-49 T 13-10-2018 CLM_1131 8679b896655d146e566485f63ebb0add 586 SUPERFAMILY SSF101473 360 583 6.93E-46 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_1131 8679b896655d146e566485f63ebb0add 586 Gene3D G3DSA:3.40.50.10440 13 182 2.7E-66 T 13-10-2018 CLM_1131 8679b896655d146e566485f63ebb0add 586 SMART SM01120 400 583 2.2E-60 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_1131 8679b896655d146e566485f63ebb0add 586 Pfam PF02734 DAK2 domain 401 582 1.2E-49 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_1131 8679b896655d146e566485f63ebb0add 586 Pfam PF02733 Dak1 domain 18 328 1.7E-127 T 13-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_1131 8679b896655d146e566485f63ebb0add 586 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 329 3.2E-136 T 13-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 CLM_1131 8679b896655d146e566485f63ebb0add 586 Gene3D G3DSA:1.25.40.340 369 586 1.5E-54 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 281 8.2E-60 T 13-10-2018 IPR000150 Cof family GO:0016787 CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 Gene3D G3DSA:3.30.1240.10 82 210 1.3E-85 T 13-10-2018 CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 ProSitePatterns PS01229 Hypothetical cof family signature 2. 235 257 - T 13-10-2018 CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 SUPERFAMILY SSF56784 1 285 3.44E-67 T 13-10-2018 IPR036412 HAD-like superfamily CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 281 2.4E-65 T 13-10-2018 CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 254 6.1E-26 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 Gene3D G3DSA:3.40.50.1000 3 278 1.3E-85 T 13-10-2018 IPR023214 HAD superfamily CLM_1857 963647511f6fe03ee2e0ab619b5c105c 286 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 328 2.4E-137 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 313 7.7E-50 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 PIRSF PIRSF000148 2 330 7.8E-126 T 13-10-2018 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 SUPERFAMILY SSF55347 129 314 2.88E-73 T 13-10-2018 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 119 2.3E-35 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 SUPERFAMILY SSF51735 3 156 7.76E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 Gene3D G3DSA:3.40.50.720 5 324 1.2E-133 T 13-10-2018 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 327 36.977 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 SMART SM00859 4 121 1.1E-44 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CLM_3564 1b59d7c88eb940830673e4494bf7ab9d 330 Gene3D G3DSA:3.30.360.10 128 310 1.2E-133 T 13-10-2018 CLM_1962 b5d8b68ca4da397a6ca202d5da4a9c3b 288 Pfam PF00583 Acetyltransferase (GNAT) family 194 275 4.8E-11 T 13-10-2018 IPR000182 GNAT domain CLM_1962 b5d8b68ca4da397a6ca202d5da4a9c3b 288 SUPERFAMILY SSF55729 100 278 5.49E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1962 b5d8b68ca4da397a6ca202d5da4a9c3b 288 Gene3D G3DSA:3.40.630.30 138 285 6.7E-19 T 13-10-2018 CLM_2999 6236edf618593afd12fffa6396591172 399 Pfam PF07995 Glucose / Sorbosone dehydrogenase 218 290 1.8E-5 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase CLM_2999 6236edf618593afd12fffa6396591172 399 SUPERFAMILY SSF50952 54 290 8.11E-18 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CLM_2999 6236edf618593afd12fffa6396591172 399 Gene3D G3DSA:2.120.10.30 90 398 9.8E-10 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_1893 031df913eaca4c0d734e56b510af7879 124 Gene3D G3DSA:2.30.30.40 63 122 4.4E-16 T 13-10-2018 CLM_1893 031df913eaca4c0d734e56b510af7879 124 SUPERFAMILY SSF53187 1 40 6.28E-6 T 13-10-2018 CLM_1893 031df913eaca4c0d734e56b510af7879 124 Gene3D G3DSA:3.40.630.40 1 44 1.7E-11 T 13-10-2018 CLM_1893 031df913eaca4c0d734e56b510af7879 124 Pfam PF08239 Bacterial SH3 domain 72 122 2.4E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_1871 611c9fe93951e4cc54ed5306461c1a3e 327 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 8 320 5.2E-121 T 13-10-2018 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 CLM_1871 611c9fe93951e4cc54ed5306461c1a3e 327 Pfam PF00676 Dehydrogenase E1 component 16 311 5.3E-100 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 CLM_1871 611c9fe93951e4cc54ed5306461c1a3e 327 SUPERFAMILY SSF52518 7 324 4.27E-110 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CLM_1871 611c9fe93951e4cc54ed5306461c1a3e 327 Gene3D G3DSA:3.40.50.970 1 327 2.4E-136 T 13-10-2018 CLM_2268 1bfd0dfefe7d7d72ff42a9a288ced646 214 Gene3D G3DSA:2.160.10.10 91 214 1.1E-29 T 13-10-2018 CLM_2268 1bfd0dfefe7d7d72ff42a9a288ced646 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 151 8.8E-5 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_2268 1bfd0dfefe7d7d72ff42a9a288ced646 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 163 194 2.7E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_2268 1bfd0dfefe7d7d72ff42a9a288ced646 214 Gene3D G3DSA:3.40.50.20 1 90 5.0E-21 T 13-10-2018 CLM_2268 1bfd0dfefe7d7d72ff42a9a288ced646 214 SUPERFAMILY SSF51161 1 212 3.19E-39 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_2268 1bfd0dfefe7d7d72ff42a9a288ced646 214 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 4 209 2.5E-67 T 13-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like CLM_1386 209b71a19306a619ff8e2138dc2aa017 190 Gene3D G3DSA:1.20.1260.10 1 188 1.3E-64 T 13-10-2018 IPR012347 Ferritin-like CLM_1386 209b71a19306a619ff8e2138dc2aa017 190 SUPERFAMILY SSF47240 1 189 1.8E-70 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_1386 209b71a19306a619ff8e2138dc2aa017 190 Pfam PF05067 Manganese containing catalase 1 183 2.8E-60 T 13-10-2018 IPR007760 Manganese catalase CLM_0049 ca697ca3725092f9ab983858916e981b 314 Pfam PF13302 Acetyltransferase (GNAT) domain 148 286 2.2E-20 T 13-10-2018 IPR000182 GNAT domain CLM_0049 ca697ca3725092f9ab983858916e981b 314 SUPERFAMILY SSF55729 139 310 1.39E-41 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0049 ca697ca3725092f9ab983858916e981b 314 Gene3D G3DSA:3.40.630.30 1 131 4.5E-25 T 13-10-2018 CLM_0049 ca697ca3725092f9ab983858916e981b 314 Gene3D G3DSA:3.40.630.30 135 313 2.5E-41 T 13-10-2018 CLM_0333 3782ae3358474d436a0589a79f8e2fb9 256 Gene3D G3DSA:3.40.50.300 1 248 1.3E-64 T 13-10-2018 CLM_0333 3782ae3358474d436a0589a79f8e2fb9 256 SUPERFAMILY SSF52540 3 224 3.06E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0333 3782ae3358474d436a0589a79f8e2fb9 256 Pfam PF00005 ABC transporter 25 173 2.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0333 3782ae3358474d436a0589a79f8e2fb9 256 SMART SM00382 34 221 7.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0348 37ddcb8e7994221b5e95d95853429b59 157 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 9 132 1.3E-45 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0348 37ddcb8e7994221b5e95d95853429b59 157 Gene3D G3DSA:2.70.70.10 3 157 6.3E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0348 37ddcb8e7994221b5e95d95853429b59 157 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 10 131 1.5E-40 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_0348 37ddcb8e7994221b5e95d95853429b59 157 SUPERFAMILY SSF51261 3 147 1.1E-48 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0348 37ddcb8e7994221b5e95d95853429b59 157 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 73 85 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CLM_4153 47bcd1f1d295da6f8d28b3e5105facf9 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 4 44 4.1E-18 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4153 47bcd1f1d295da6f8d28b3e5105facf9 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 31 9.0E-10 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4153 47bcd1f1d295da6f8d28b3e5105facf9 44 Pfam PF00468 Ribosomal protein L34 2 44 7.0E-21 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4153 47bcd1f1d295da6f8d28b3e5105facf9 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 14.406 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_4153 47bcd1f1d295da6f8d28b3e5105facf9 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_2735 c52625e6e8b9bb7094d6547abca934f0 292 Pfam PF01926 50S ribosome-binding GTPase 122 194 7.2E-16 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CLM_2735 c52625e6e8b9bb7094d6547abca934f0 292 SUPERFAMILY SSF52540 9 271 1.55E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2735 c52625e6e8b9bb7094d6547abca934f0 292 Gene3D G3DSA:1.10.1580.10 181 281 6.7E-28 T 13-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily CLM_2735 c52625e6e8b9bb7094d6547abca934f0 292 PIRSF PIRSF006230 1 283 2.6E-96 T 13-10-2018 IPR016478 GTPase, MTG1 CLM_2735 c52625e6e8b9bb7094d6547abca934f0 292 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 278 4.2E-108 T 13-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis CLM_2735 c52625e6e8b9bb7094d6547abca934f0 292 Gene3D G3DSA:3.40.50.300 12 179 4.5E-44 T 13-10-2018 CLM_1720 3b4efe9e9dfeb0c394d7b343642c8848 181 Gene3D G3DSA:3.40.1050.10 16 177 8.6E-10 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 CLM_1720 3b4efe9e9dfeb0c394d7b343642c8848 181 SUPERFAMILY SSF53056 24 178 5.1E-10 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 CLM_1720 3b4efe9e9dfeb0c394d7b343642c8848 181 SMART SM00947 36 178 2.7E-7 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CLM_0687 4ce416c9d7a33a44f68e4a7402b263d1 39 TIGRFAM TIGR04333 Clo7Bot_mod_Cys: Cys-rich peptide, Clo7bot family 1 33 2.9E-18 T 13-10-2018 IPR027601 Cys-rich peptide, Clo7bot family CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 Pfam PF00375 Sodium:dicarboxylate symporter family 13 403 3.9E-95 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 Gene3D G3DSA:1.10.3860.10 1 408 1.3E-81 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 SUPERFAMILY SSF118215 11 403 2.75E-83 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 4.5E-18 T 13-10-2018 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 4.5E-18 T 13-10-2018 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 4.5E-18 T 13-10-2018 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 4.5E-18 T 13-10-2018 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 4.5E-18 T 13-10-2018 CLM_0670 104a6497e0fd18595d68102d3a34ee0e 417 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.5E-18 T 13-10-2018 CLM_2111 9940d9019ce43be58055d728c0954e40 172 TIGRFAM TIGR02833 spore_III_AB: stage III sporulation protein AB 3 172 2.2E-51 T 13-10-2018 IPR014198 Stage III sporulation protein AB CLM_2111 9940d9019ce43be58055d728c0954e40 172 PIRSF PIRSF021435 1 172 3.5E-57 T 13-10-2018 IPR014198 Stage III sporulation protein AB CLM_2111 9940d9019ce43be58055d728c0954e40 172 Pfam PF09548 Stage III sporulation protein AB (spore_III_AB) 3 172 2.5E-48 T 13-10-2018 IPR014198 Stage III sporulation protein AB CLM_2174 440e81b336143947167c466104f991f3 84 Gene3D G3DSA:2.40.300.10 3 68 7.8E-16 T 13-10-2018 CLM_2174 440e81b336143947167c466104f991f3 84 Pfam PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain 2 62 7.8E-16 T 13-10-2018 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain CLM_0379 39affc5784c567cbed0ab6d0c56b1d78 342 Gene3D G3DSA:1.10.3470.10 13 341 1.3E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_0379 39affc5784c567cbed0ab6d0c56b1d78 342 Pfam PF01032 FecCD transport family 27 336 1.7E-89 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_0379 39affc5784c567cbed0ab6d0c56b1d78 342 SUPERFAMILY SSF81345 13 336 1.31E-79 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 Pfam PF00196 Bacterial regulatory proteins, luxR family 1 45 4.1E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 SMART SM00421 1 47 8.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 ProSitePatterns PS00622 LuxR-type HTH domain signature. 7 34 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 Gene3D G3DSA:1.10.10.10 1 53 5.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 SUPERFAMILY SSF46894 2 52 1.87E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 7 23 2.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_1788 79e2261cc2a8400c5f185e94fefc9984 55 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 23 35 2.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CLM_0738 6eb553c9ba9d4207df56401e8667d927 128 SUPERFAMILY SSF54593 6 122 3.22E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0738 6eb553c9ba9d4207df56401e8667d927 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 119 6.9E-18 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_0738 6eb553c9ba9d4207df56401e8667d927 128 Gene3D G3DSA:3.10.180.10 2 122 4.9E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_2100 2c894ec09c6676c27970fa1db91e240e 290 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 78 94 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site CLM_2100 2c894ec09c6676c27970fa1db91e240e 290 Gene3D G3DSA:1.10.600.10 2 290 5.1E-105 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CLM_2100 2c894ec09c6676c27970fa1db91e240e 290 SUPERFAMILY SSF48576 4 273 8.28E-84 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CLM_2100 2c894ec09c6676c27970fa1db91e240e 290 Pfam PF00348 Polyprenyl synthetase 27 281 2.8E-59 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 CLM_2100 2c894ec09c6676c27970fa1db91e240e 290 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 209 221 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site CLM_0168 2af40a3ab31208ab9d7ee8d5c86119ad 393 Gene3D G3DSA:3.30.300.210 242 393 2.8E-34 T 13-10-2018 IPR038501 Spore germination GerAC superfamily CLM_0168 2af40a3ab31208ab9d7ee8d5c86119ad 393 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 4 392 7.5E-109 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 CLM_0168 2af40a3ab31208ab9d7ee8d5c86119ad 393 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 228 390 3.7E-32 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 CLM_3170 78a2cd72df28867144a02b0b2b1987b5 136 PRINTS PR01438 Universal stress protein signature 3 21 3.9E-11 T 13-10-2018 IPR006015 Universal stress protein A CLM_3170 78a2cd72df28867144a02b0b2b1987b5 136 PRINTS PR01438 Universal stress protein signature 115 136 3.9E-11 T 13-10-2018 IPR006015 Universal stress protein A CLM_3170 78a2cd72df28867144a02b0b2b1987b5 136 PRINTS PR01438 Universal stress protein signature 98 110 3.9E-11 T 13-10-2018 IPR006015 Universal stress protein A CLM_3170 78a2cd72df28867144a02b0b2b1987b5 136 SUPERFAMILY SSF52402 5 136 2.09E-23 T 13-10-2018 CLM_3170 78a2cd72df28867144a02b0b2b1987b5 136 Gene3D G3DSA:3.40.50.620 2 136 1.2E-24 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3170 78a2cd72df28867144a02b0b2b1987b5 136 Pfam PF00582 Universal stress protein family 5 136 3.3E-17 T 13-10-2018 IPR006016 UspA CLM_0717 b39593e7f734e17363825fe5423a208e 238 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 100 219 1.1E-36 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 CLM_0717 b39593e7f734e17363825fe5423a208e 238 Gene3D G3DSA:3.30.1380.10 37 238 1.8E-66 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CLM_0717 b39593e7f734e17363825fe5423a208e 238 SUPERFAMILY SSF55166 80 227 2.28E-33 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CLM_0950 25bef73401b443f3d6d590b7b1b4d3af 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 125 1.4E-16 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLM_0950 25bef73401b443f3d6d590b7b1b4d3af 140 Gene3D G3DSA:3.10.180.10 1 128 5.6E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0950 25bef73401b443f3d6d590b7b1b4d3af 140 SUPERFAMILY SSF54593 1 132 6.31E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0904 c292e61745e71a3726823285357683f9 148 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 23 141 1.1E-29 T 13-10-2018 IPR010181 CGCAxxGCC motif CLM_0904 c292e61745e71a3726823285357683f9 148 SUPERFAMILY SSF48695 6 143 6.28E-13 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CLM_0904 c292e61745e71a3726823285357683f9 148 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 23 142 8.0E-37 T 13-10-2018 IPR010181 CGCAxxGCC motif CLM_1966 b220f745b81c7b79313c43fb63077f02 124 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 8 120 4.0E-23 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CLM_1966 b220f745b81c7b79313c43fb63077f02 124 Gene3D G3DSA:3.30.1330.40 1 124 6.3E-39 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_1966 b220f745b81c7b79313c43fb63077f02 124 Pfam PF07736 Chorismate mutase type I 2 120 4.9E-38 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CLM_1966 b220f745b81c7b79313c43fb63077f02 124 PIRSF PIRSF005965 1 124 8.4E-40 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CLM_1966 b220f745b81c7b79313c43fb63077f02 124 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 3 120 9.6E-32 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CLM_1966 b220f745b81c7b79313c43fb63077f02 124 SUPERFAMILY SSF55298 2 121 7.38E-36 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_3257 62a12e51f70e9327377812eb0b12e57a 619 Pfam PF00884 Sulfatase 249 536 6.8E-40 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CLM_3257 62a12e51f70e9327377812eb0b12e57a 619 SUPERFAMILY SSF53649 248 576 2.94E-66 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CLM_3257 62a12e51f70e9327377812eb0b12e57a 619 PIRSF PIRSF005091 1 619 2.8E-181 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like CLM_3257 62a12e51f70e9327377812eb0b12e57a 619 Gene3D G3DSA:3.40.720.10 241 543 2.7E-76 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CLM_2248 06ba61c4d6b718770619188156b332f6 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 1.0E-23 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 390 410 1.0E-23 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 1.0E-23 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 1.0E-23 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 1.0E-23 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 Pfam PF00209 Sodium:neurotransmitter symporter family 125 477 2.3E-79 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 29 43 - T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CLM_2248 06ba61c4d6b718770619188156b332f6 497 SUPERFAMILY SSF161070 5 478 1.31E-149 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 SUPERFAMILY SSF48150 114 296 1.61E-37 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 Gene3D G3DSA:1.10.340.30 114 244 1.8E-36 T 13-10-2018 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 SUPERFAMILY SSF55945 12 113 2.04E-22 T 13-10-2018 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 Gene3D G3DSA:3.30.310.260 1 113 4.9E-42 T 13-10-2018 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 120 271 1.1E-16 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 Gene3D G3DSA:1.10.1670.50 245 302 5.7E-26 T 13-10-2018 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 SMART SM00478 124 296 6.2E-11 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CLM_3737 d1ac1e27be54ccb14f0fac6ea58ab608 305 Pfam PF07934 8-oxoguanine DNA glycosylase, N-terminal domain 16 118 1.5E-24 T 13-10-2018 IPR012904 8-oxoguanine DNA glycosylase, N-terminal GO:0003684|GO:0006289|GO:0008534 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357|Reactome: R-HSA-5649702 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 Pfam PF00232 Glycosyl hydrolase family 1 2 465 4.0E-141 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 9 23 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 SUPERFAMILY SSF51445 2 465 1.65E-159 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 PRINTS PR00131 Glycosyl hydrolase family 1 signature 384 395 9.6E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 PRINTS PR00131 Glycosyl hydrolase family 1 signature 430 442 9.6E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 PRINTS PR00131 Glycosyl hydrolase family 1 signature 405 422 9.6E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 PRINTS PR00131 Glycosyl hydrolase family 1 signature 359 367 9.6E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 PRINTS PR00131 Glycosyl hydrolase family 1 signature 294 308 9.6E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 Gene3D G3DSA:3.20.20.80 3 468 3.1E-152 T 13-10-2018 CLM_1355 dd9b108fb7a765e4ba7959e065ebda13 481 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 359 367 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 SMART SM00936 276 361 1.2E-7 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 258 2.4E-62 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 Gene3D G3DSA:3.40.710.10 21 297 1.4E-90 T 13-10-2018 CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 295 359 3.3E-6 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 SUPERFAMILY SSF56601 8 276 5.93E-65 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 3.3E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 3.3E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_2013 4e9847b3b9ac159d13c3081ece8c54f7 378 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 68 79 3.3E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CLM_0029 3c29fabfa2ec4f74d6c50954c2b1b1ff 532 Pfam PF03109 ABC1 family 93 208 5.8E-28 T 13-10-2018 IPR004147 UbiB domain CLM_0029 3c29fabfa2ec4f74d6c50954c2b1b1ff 532 Gene3D G3DSA:1.10.510.10 234 316 1.3E-5 T 13-10-2018 CLM_0029 3c29fabfa2ec4f74d6c50954c2b1b1ff 532 SUPERFAMILY SSF56112 75 310 5.39E-25 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_1235 c78653b5e101b25dcba3b1b3e1bc9f52 52 Pfam PF12669 Virus attachment protein p12 family 2 40 1.3E-11 T 13-10-2018 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PIRSF PIRSF000513 1 263 2.4E-87 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 9 255 30.851 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 SUPERFAMILY SSF53613 7 261 7.02E-59 T 13-10-2018 IPR029056 Ribokinase-like CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 7 252 1.5E-86 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 Gene3D G3DSA:3.40.1190.20 1 260 4.3E-92 T 13-10-2018 IPR029056 Ribokinase-like CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 15 22 9.9E-32 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 85 102 9.9E-32 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 116 130 9.9E-32 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 59 67 9.9E-32 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 28 49 9.9E-32 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 160 177 9.9E-32 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_0532 84edec3e3c17118e3914b6285ea3999a 263 Pfam PF02110 Hydroxyethylthiazole kinase family 7 250 1.1E-82 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CLM_3623 48d6a03a172be444fea801980d1a1f72 251 SUPERFAMILY SSF51695 4 237 1.86E-73 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CLM_3623 48d6a03a172be444fea801980d1a1f72 251 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 10 235 8.4E-43 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CLM_3623 48d6a03a172be444fea801980d1a1f72 251 Gene3D G3DSA:3.20.20.190 1 242 4.5E-78 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CLM_0712 cd580dd55117092b37e38c02eccbe76d 130 Pfam PF01381 Helix-turn-helix 7 61 2.7E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0712 cd580dd55117092b37e38c02eccbe76d 130 SUPERFAMILY SSF47413 1 65 5.9E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_0712 cd580dd55117092b37e38c02eccbe76d 130 Gene3D G3DSA:1.10.260.40 1 64 1.2E-24 T 13-10-2018 CLM_0712 cd580dd55117092b37e38c02eccbe76d 130 SMART SM00530 6 61 1.3E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 7.0E-18 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 289 296 7.0E-18 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 181 7.0E-18 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 248 262 7.0E-18 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 Gene3D G3DSA:3.50.50.60 4 297 3.7E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 SUPERFAMILY SSF51905 1 324 2.02E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.4E-25 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 263 4.4E-25 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 4.4E-25 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 109 127 4.4E-25 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 296 4.4E-25 T 13-10-2018 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 296 4.6E-36 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CLM_1229 ce590e8fdf9bbe5ba2a106889f02e349 418 Gene3D G3DSA:3.50.50.60 121 255 3.7E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1398 e1d8a62cbf7efaf0d7b034622a3da660 195 SUPERFAMILY SSF46689 9 83 2.62E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1398 e1d8a62cbf7efaf0d7b034622a3da660 195 Gene3D G3DSA:1.10.357.10 9 193 8.3E-17 T 13-10-2018 CLM_1398 e1d8a62cbf7efaf0d7b034622a3da660 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 63 4.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 114 133 1.9E-6 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 75 94 1.9E-6 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 383 402 1.9E-6 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 340 355 1.9E-6 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 Gene3D G3DSA:3.40.640.10 102 345 3.8E-113 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 64 401 1.3E-47 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 Gene3D G3DSA:3.90.1150.170 46 454 3.8E-113 T 13-10-2018 CLM_0291 6e6200c2feeeeb4ea5125361e2d0d278 474 SUPERFAMILY SSF53383 44 467 3.67E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3583 07f1c244d3f567b28a0319c6f8040527 267 SUPERFAMILY SSF161098 68 254 1.83E-29 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3583 07f1c244d3f567b28a0319c6f8040527 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 265 1.1E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_3583 07f1c244d3f567b28a0319c6f8040527 267 Gene3D G3DSA:1.10.3720.10 67 264 7.7E-22 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2201 db827e412e4f85216bde407c656bd0b6 476 Gene3D G3DSA:1.20.1530.20 1 383 2.5E-26 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_2201 db827e412e4f85216bde407c656bd0b6 476 Pfam PF00999 Sodium/hydrogen exchanger family 6 380 1.8E-46 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CLM_2201 db827e412e4f85216bde407c656bd0b6 476 Gene3D G3DSA:3.30.70.1450 396 475 3.6E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_2201 db827e412e4f85216bde407c656bd0b6 476 SUPERFAMILY SSF116726 402 463 5.75E-13 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CLM_2201 db827e412e4f85216bde407c656bd0b6 476 Pfam PF02080 TrkA-C domain 406 464 4.7E-14 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CLM_3766 c400789f9d60d24713986aa3c082cfee 268 Gene3D G3DSA:3.30.1240.10 86 190 5.7E-86 T 13-10-2018 CLM_3766 c400789f9d60d24713986aa3c082cfee 268 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 234 4.4E-26 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CLM_3766 c400789f9d60d24713986aa3c082cfee 268 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 261 1.8E-67 T 13-10-2018 IPR000150 Cof family GO:0016787 CLM_3766 c400789f9d60d24713986aa3c082cfee 268 Gene3D G3DSA:3.40.50.1000 3 261 5.7E-86 T 13-10-2018 IPR023214 HAD superfamily CLM_3766 c400789f9d60d24713986aa3c082cfee 268 SUPERFAMILY SSF56784 1 266 7.01E-80 T 13-10-2018 IPR036412 HAD-like superfamily CLM_3766 c400789f9d60d24713986aa3c082cfee 268 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 CLM_3766 c400789f9d60d24713986aa3c082cfee 268 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 261 2.7E-73 T 13-10-2018 CLM_2031 929ae732ec738b8115570a26559a6cf7 508 Pfam PF13520 Amino acid permease 13 481 1.0E-28 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2031 929ae732ec738b8115570a26559a6cf7 508 Gene3D G3DSA:1.20.1740.10 5 506 6.3E-13 T 13-10-2018 CLM_2031 929ae732ec738b8115570a26559a6cf7 508 PIRSF PIRSF006060 1 507 4.1E-45 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 Pfam PF12229 Putative peptidoglycan binding domain 80 192 1.5E-15 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 Pfam PF12229 Putative peptidoglycan binding domain 205 320 2.5E-26 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 SUPERFAMILY SSF141523 338 459 1.03E-32 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 Gene3D G3DSA:1.10.269.20 214 334 3.5E-37 T 13-10-2018 IPR038054 L,D-transpeptidase central domain-like superfamily CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 Pfam PF03734 L,D-transpeptidase catalytic domain 341 458 3.5E-19 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 SUPERFAMILY SSF143985 214 332 2.35E-40 T 13-10-2018 IPR038054 L,D-transpeptidase central domain-like superfamily CLM_2414 6801e285812e731a5879cf02c9c2f73e 461 Gene3D G3DSA:2.40.440.10 340 460 1.6E-39 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_0635 2e39f3b99603959c165961b03087818a 178 Pfam PF02417 Chromate transporter 5 170 3.3E-47 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 CLM_2583 383aa5baf6844eaa28389aeb795c860a 149 Pfam PF01641 SelR domain 12 132 1.3E-48 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CLM_2583 383aa5baf6844eaa28389aeb795c860a 149 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 8 141 2.0E-63 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CLM_2583 383aa5baf6844eaa28389aeb795c860a 149 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 6 133 36.848 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CLM_2583 383aa5baf6844eaa28389aeb795c860a 149 Gene3D G3DSA:2.170.150.20 2 149 5.8E-60 T 13-10-2018 CLM_2583 383aa5baf6844eaa28389aeb795c860a 149 SUPERFAMILY SSF51316 7 148 2.72E-60 T 13-10-2018 IPR011057 Mss4-like superfamily CLM_1850 6c5bc37f91350561fb9007a12c4792d4 111 Pfam PF03091 CutA1 divalent ion tolerance protein 63 106 4.5E-5 T 13-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 CLM_1850 6c5bc37f91350561fb9007a12c4792d4 111 SUPERFAMILY SSF102705 5 109 1.8E-16 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CLM_1850 6c5bc37f91350561fb9007a12c4792d4 111 Gene3D G3DSA:3.30.70.120 2 109 8.7E-30 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_1276 ab29bda45f4e0ab57c5434fbf363364e 67 Pfam PF00403 Heavy-metal-associated domain 6 65 1.6E-7 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_1276 ab29bda45f4e0ab57c5434fbf363364e 67 Gene3D G3DSA:3.30.70.100 1 66 2.6E-11 T 13-10-2018 CLM_1276 ab29bda45f4e0ab57c5434fbf363364e 67 SUPERFAMILY SSF55008 3 66 2.62E-11 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_2022 abd3b7e5d92aaec6a585c45ba0148165 360 SUPERFAMILY SSF56219 60 360 1.57E-31 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_2022 abd3b7e5d92aaec6a585c45ba0148165 360 Gene3D G3DSA:3.60.10.10 58 360 2.2E-33 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLM_0798 62a08936bcc139e131760be8aaf2040e 308 Gene3D G3DSA:3.40.710.10 35 304 1.2E-74 T 13-10-2018 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 ProSitePatterns PS00146 Beta-lactamase class-A active site. 83 98 - T 13-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 219 234 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 157 181 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 183 208 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 50 74 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 236 251 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 121 146 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 PRINTS PR00118 Beta-lactamase class A signature 81 98 2.7E-57 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CLM_0798 62a08936bcc139e131760be8aaf2040e 308 SUPERFAMILY SSF56601 51 303 1.62E-72 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_0798 62a08936bcc139e131760be8aaf2040e 308 Pfam PF13354 Beta-lactamase enzyme family 70 276 7.0E-34 T 13-10-2018 CLM_1573 b2901fd18b9c14a04960531df4f0a521 240 Gene3D G3DSA:3.90.640.20 149 236 4.6E-17 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily CLM_1573 b2901fd18b9c14a04960531df4f0a521 240 Pfam PF11738 Protein of unknown function (DUF3298) 151 222 4.4E-15 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 CLM_1573 b2901fd18b9c14a04960531df4f0a521 240 Gene3D G3DSA:3.30.565.40 52 147 1.6E-12 T 13-10-2018 CLM_3882 374e90ab93127c5c8062fcf7956d8b50 181 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 4 170 9.5E-81 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 CLM_3882 374e90ab93127c5c8062fcf7956d8b50 181 PIRSF PIRSF038321 1 181 1.6E-92 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 CLM_3882 374e90ab93127c5c8062fcf7956d8b50 181 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 179 8.4E-90 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 CLM_1920 0a03544c8359cd304c70a69495abddf1 394 Gene3D G3DSA:1.20.1250.20 7 391 9.7E-65 T 13-10-2018 CLM_1920 0a03544c8359cd304c70a69495abddf1 394 Pfam PF07690 Major Facilitator Superfamily 18 360 1.3E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CLM_1920 0a03544c8359cd304c70a69495abddf1 394 SUPERFAMILY SSF103473 14 389 7.06E-56 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1437 26113444e4a009d2da3673c5db5baa3b 130 Pfam PF11667 Putative zincin peptidase 8 112 1.6E-18 T 13-10-2018 IPR021683 Putative zincin peptidase CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 301 321 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 389 408 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 245 264 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 15 32 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 156 178 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 324 345 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 80 99 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 363 385 3.0E-68 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 Pfam PF02073 Thermophilic metalloprotease (M29) 5 408 1.6E-181 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 Gene3D G3DSA:3.40.1830.10 1 180 3.0E-72 T 13-10-2018 IPR035097 Peptidase M29, N-terminal CLM_3160 2718a82aceabcca6d4734b478d921b6c 410 SUPERFAMILY SSF144052 4 409 1.16E-151 T 13-10-2018 CLM_2136 d271956cd0bca3cb73298d996539a728 569 SMART SM00304 209 263 3.1E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CLM_2136 d271956cd0bca3cb73298d996539a728 569 Gene3D G3DSA:1.10.287.950 271 568 1.6E-54 T 13-10-2018 CLM_2136 d271956cd0bca3cb73298d996539a728 569 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 180 7.7E-32 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLM_2136 d271956cd0bca3cb73298d996539a728 569 SMART SM00283 285 568 9.3E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2136 d271956cd0bca3cb73298d996539a728 569 Gene3D G3DSA:1.20.1480.50 171 270 4.3E-8 T 13-10-2018 CLM_2136 d271956cd0bca3cb73298d996539a728 569 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 341 520 1.5E-29 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2136 d271956cd0bca3cb73298d996539a728 569 SUPERFAMILY SSF58104 231 568 5.41E-58 T 13-10-2018 CLM_3108 965e30541b84d796761e9e3c4d31d9ea 93 Pfam PF04316 Anti-sigma-28 factor, FlgM 32 87 1.7E-12 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal CLM_3108 965e30541b84d796761e9e3c4d31d9ea 93 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 89 2.3E-11 T 13-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 CLM_3108 965e30541b84d796761e9e3c4d31d9ea 93 SUPERFAMILY SSF101498 1 88 4.05E-14 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily CLM_3306 bc3f25d9a9512d359a85ca0903dd1979 96 Pfam PF01910 Thiamine-binding protein 7 94 3.6E-30 T 13-10-2018 IPR002767 Thiamine-binding protein CLM_3306 bc3f25d9a9512d359a85ca0903dd1979 96 Gene3D G3DSA:3.30.70.930 1 96 2.8E-38 T 13-10-2018 IPR029756 MTH1187/YkoF-like CLM_3306 bc3f25d9a9512d359a85ca0903dd1979 96 SUPERFAMILY SSF89957 2 95 1.83E-28 T 13-10-2018 IPR029756 MTH1187/YkoF-like CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 Gene3D G3DSA:1.10.1040.10 181 276 4.4E-34 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 SUPERFAMILY SSF48179 178 275 8.5E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2 176 2.2E-61 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 PIRSF PIRSF000105 1 276 3.0E-89 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 176 200 - T 13-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 Gene3D G3DSA:3.40.50.720 1 177 1.9E-64 T 13-10-2018 CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 SUPERFAMILY SSF51735 2 176 2.71E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3613 8019ddb27b30c62967856a08c0fa5293 276 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 179 275 2.6E-34 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CLM_3915 6d18b3d7aa2ea0a33f4f7a1139e303fa 267 Pfam PF02361 Cobalt transport protein 15 235 4.2E-53 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component CLM_3915 6d18b3d7aa2ea0a33f4f7a1139e303fa 267 Hamap MF_01461 Energy-coupling factor transporter transmembrane protein EcfT [ecfT]. 2 265 36.547 T 13-10-2018 IPR024919 ECF transporter transmembrane protein EcfT GO:0016021|GO:0022857|GO:0055085 CLM_0278 8935cfbba4183eab26218a20292667e3 248 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 2.0E-59 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0278 8935cfbba4183eab26218a20292667e3 248 SUPERFAMILY SSF51351 1 247 6.02E-99 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0278 8935cfbba4183eab26218a20292667e3 248 Pfam PF00121 Triosephosphate isomerase 5 246 3.3E-95 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0278 8935cfbba4183eab26218a20292667e3 248 Gene3D G3DSA:3.20.20.70 1 248 5.8E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0278 8935cfbba4183eab26218a20292667e3 248 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 62.723 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_0278 8935cfbba4183eab26218a20292667e3 248 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 PIRSF PIRSF026583 1 661 1.5E-218 T 13-10-2018 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 Pfam PF02272 DHHA1 domain 526 651 3.7E-15 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 Gene3D G3DSA:3.10.310.30 554 658 1.6E-10 T 13-10-2018 CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 Gene3D G3DSA:3.90.1640.10 332 549 1.0E-53 T 13-10-2018 CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 Gene3D G3DSA:3.30.450.20 52 172 4.5E-10 T 13-10-2018 CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 SUPERFAMILY SSF64182 349 647 1.96E-65 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CLM_4128 91abf30ba865315f756d68ed0fc46dc2 661 Pfam PF01368 DHH family 349 504 1.2E-20 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CLM_2431 249ae079fbd92cd58ca0151afdb94727 254 Pfam PF00691 OmpA family 129 228 4.5E-19 T 13-10-2018 IPR006665 OmpA-like domain CLM_2431 249ae079fbd92cd58ca0151afdb94727 254 Gene3D G3DSA:3.30.1330.60 88 236 1.1E-44 T 13-10-2018 IPR036737 OmpA-like domain superfamily CLM_2431 249ae079fbd92cd58ca0151afdb94727 254 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 53 2.5E-19 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain CLM_2431 249ae079fbd92cd58ca0151afdb94727 254 SUPERFAMILY SSF103088 117 234 1.05E-29 T 13-10-2018 IPR036737 OmpA-like domain superfamily CLM_2805 8d87a62a27d76e0e659c46aa8e71d95a 249 Pfam PF13672 Protein phosphatase 2C 13 203 6.7E-16 T 13-10-2018 CLM_2805 8d87a62a27d76e0e659c46aa8e71d95a 249 SMART SM00332 2 237 1.3E-17 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_2805 8d87a62a27d76e0e659c46aa8e71d95a 249 SMART SM00331 6 239 3.2E-37 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_2805 8d87a62a27d76e0e659c46aa8e71d95a 249 Gene3D G3DSA:3.60.40.10 2 240 1.2E-65 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_2805 8d87a62a27d76e0e659c46aa8e71d95a 249 SUPERFAMILY SSF81606 3 236 2.75E-61 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CLM_0551 49e331636c01630be9fab45927087098 196 Gene3D G3DSA:3.40.50.150 4 192 1.5E-31 T 13-10-2018 CLM_0551 49e331636c01630be9fab45927087098 196 SUPERFAMILY SSF53335 5 182 6.57E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0551 49e331636c01630be9fab45927087098 196 Pfam PF13847 Methyltransferase domain 35 152 1.3E-17 T 13-10-2018 IPR025714 Methyltransferase domain CLM_2225 942a8bd632e895725abb6c6561c47500 182 SMART SM00267 18 182 5.9E-26 T 13-10-2018 IPR000160 GGDEF domain CLM_2225 942a8bd632e895725abb6c6561c47500 182 Gene3D G3DSA:3.30.70.270 15 182 9.2E-39 T 13-10-2018 CLM_2225 942a8bd632e895725abb6c6561c47500 182 SUPERFAMILY SSF55073 35 179 2.88E-34 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_2225 942a8bd632e895725abb6c6561c47500 182 Pfam PF00990 Diguanylate cyclase, GGDEF domain 32 180 3.4E-34 T 13-10-2018 IPR000160 GGDEF domain CLM_2225 942a8bd632e895725abb6c6561c47500 182 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 31 180 1.3E-35 T 13-10-2018 IPR000160 GGDEF domain CLM_0151 bfeecbbb2a6c6a0fa75a27939f01bef3 371 Gene3D G3DSA:3.40.50.2000 181 371 9.8E-48 T 13-10-2018 CLM_0151 bfeecbbb2a6c6a0fa75a27939f01bef3 371 SUPERFAMILY SSF53756 46 370 8.52E-75 T 13-10-2018 CLM_0151 bfeecbbb2a6c6a0fa75a27939f01bef3 371 Pfam PF13439 Glycosyltransferase Family 4 80 170 5.3E-8 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_0151 bfeecbbb2a6c6a0fa75a27939f01bef3 371 Gene3D G3DSA:3.40.50.2000 16 180 7.7E-9 T 13-10-2018 CLM_0151 bfeecbbb2a6c6a0fa75a27939f01bef3 371 Pfam PF00534 Glycosyl transferases group 1 187 348 3.9E-34 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_0429 2e8c8d9ab9a6d85388d890ceb70ad9b4 422 Gene3D G3DSA:1.20.1530.20 9 405 2.8E-35 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_0429 2e8c8d9ab9a6d85388d890ceb70ad9b4 422 Pfam PF00999 Sodium/hydrogen exchanger family 18 398 9.3E-54 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CLM_3883 c8e02b5619d498131891096d0dcd3db7 131 Pfam PF06923 Glucitol operon activator protein (GutM) 5 108 6.7E-37 T 13-10-2018 IPR009693 Glucitol operon activator CLM_3883 c8e02b5619d498131891096d0dcd3db7 131 PIRSF PIRSF011474 1 130 3.5E-42 T 13-10-2018 IPR009693 Glucitol operon activator CLM_2277 e0b9837d724ca9bfcd33f092c90ce5cc 429 Gene3D G3DSA:3.40.50.1820 34 429 7.2E-133 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2277 e0b9837d724ca9bfcd33f092c90ce5cc 429 SUPERFAMILY SSF53474 40 404 7.37E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_3078 489b26fc0070c1e0df99b808eaea4032 445 Gene3D G3DSA:3.20.20.70 2 268 6.3E-23 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3078 489b26fc0070c1e0df99b808eaea4032 445 SUPERFAMILY SSF102114 9 255 1.44E-26 T 13-10-2018 CLM_3078 489b26fc0070c1e0df99b808eaea4032 445 Pfam PF13353 4Fe-4S single cluster domain 12 104 6.7E-8 T 13-10-2018 CLM_3078 489b26fc0070c1e0df99b808eaea4032 445 Pfam PF04055 Radical SAM superfamily 12 131 3.5E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_1267 0442bdeca74852dd08a9c48c86169568 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 250 5.1E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1267 0442bdeca74852dd08a9c48c86169568 268 SUPERFAMILY SSF161098 6 258 4.21E-49 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1267 0442bdeca74852dd08a9c48c86169568 268 Gene3D G3DSA:1.10.3720.10 1 254 3.9E-43 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3809 3ee7ccf2cc7851326d229c194140798c 437 Pfam PF00990 Diguanylate cyclase, GGDEF domain 271 427 3.4E-42 T 13-10-2018 IPR000160 GGDEF domain CLM_3809 3ee7ccf2cc7851326d229c194140798c 437 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 271 431 1.5E-42 T 13-10-2018 IPR000160 GGDEF domain CLM_3809 3ee7ccf2cc7851326d229c194140798c 437 SUPERFAMILY SSF103190 45 230 3.37E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CLM_3809 3ee7ccf2cc7851326d229c194140798c 437 SUPERFAMILY SSF55073 272 433 2.59E-39 T 13-10-2018 IPR029787 Nucleotide cyclase CLM_3809 3ee7ccf2cc7851326d229c194140798c 437 SMART SM00267 257 432 9.9E-43 T 13-10-2018 IPR000160 GGDEF domain CLM_3809 3ee7ccf2cc7851326d229c194140798c 437 Gene3D G3DSA:3.30.70.270 259 430 8.6E-45 T 13-10-2018 CLM_1057 95490d1e1cd846dc0f2bb181aff7f494 293 SUPERFAMILY SSF48452 39 187 4.13E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1057 95490d1e1cd846dc0f2bb181aff7f494 293 Gene3D G3DSA:1.25.40.10 27 240 1.1E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1522 245304016c810c7d1c6efdb203b07ee3 358 Gene3D G3DSA:2.40.100.10 246 358 3.9E-33 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CLM_1522 245304016c810c7d1c6efdb203b07ee3 358 Pfam PF05913 Bacterial protein of unknown function (DUF871) 4 356 2.9E-123 T 13-10-2018 IPR008589 Protein of unknown function DUF871, prokaryotic CLM_1522 245304016c810c7d1c6efdb203b07ee3 358 SUPERFAMILY SSF51445 3 238 3.09E-75 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1522 245304016c810c7d1c6efdb203b07ee3 358 SUPERFAMILY SSF50891 257 356 4.55E-28 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CLM_1522 245304016c810c7d1c6efdb203b07ee3 358 Gene3D G3DSA:3.20.20.70 2 241 1.1E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0840 250883c6e9218bcf6215c22585b9afa3 116 SUPERFAMILY SSF55729 4 114 5.23E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0840 250883c6e9218bcf6215c22585b9afa3 116 Pfam PF00583 Acetyltransferase (GNAT) family 13 94 3.2E-8 T 13-10-2018 IPR000182 GNAT domain CLM_0840 250883c6e9218bcf6215c22585b9afa3 116 Gene3D G3DSA:3.40.630.30 1 116 1.4E-24 T 13-10-2018 CLM_2485 5d98e5f4cc50621910fbbf74dbef306c 62 Pfam PF12788 YmaF family 8 51 2.0E-13 T 13-10-2018 IPR024307 YmaF CLM_0471 194d98c4cd97439dbb076b2a78cd11e0 351 Pfam PF06803 Protein of unknown function (DUF1232) 223 259 1.4E-13 T 13-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 CLM_3287 312b0cb5e62f3e481a1b640c11e65e40 204 Pfam PF12804 MobA-like NTP transferase domain 4 160 1.0E-33 T 13-10-2018 IPR025877 MobA-like NTP transferase CLM_3287 312b0cb5e62f3e481a1b640c11e65e40 204 TIGRFAM TIGR03310 matur_MocA_YgfJ: molybdenum cofactor cytidylyltransferase 3 186 3.2E-68 T 13-10-2018 IPR017696 Molybdenum cofactor cytidylyltransferase KEGG: 00790+2.7.7.76|MetaCyc: PWY-6476 CLM_3287 312b0cb5e62f3e481a1b640c11e65e40 204 SUPERFAMILY SSF53448 1 185 9.1E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3287 312b0cb5e62f3e481a1b640c11e65e40 204 Gene3D G3DSA:3.90.550.10 1 193 1.4E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2110 d6d5b76d3789eb99dffa0b797962b494 65 TIGRFAM TIGR02848 spore_III_AC: stage III sporulation protein AC 2 65 6.4E-29 T 13-10-2018 IPR009570 Stage III sporulation protein AC CLM_2110 d6d5b76d3789eb99dffa0b797962b494 65 Pfam PF06686 Stage III sporulation protein AC/AD protein family 7 62 1.4E-15 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family CLM_3529 370597df13e1311f161b762b13ec2fff 788 Pfam PF01136 Peptidase family U32 588 750 8.4E-13 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CLM_3529 370597df13e1311f161b762b13ec2fff 788 Pfam PF01136 Peptidase family U32 76 298 1.2E-87 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CLM_3529 370597df13e1311f161b762b13ec2fff 788 Pfam PF12392 Collagenase 376 492 4.3E-23 T 13-10-2018 IPR020988 Peptidase U32, collagenase CLM_3529 370597df13e1311f161b762b13ec2fff 788 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CLM_1380 b72df405eb1c440926f9e9c29f58ff19 224 Gene3D G3DSA:3.40.50.300 1 224 5.3E-70 T 13-10-2018 CLM_1380 b72df405eb1c440926f9e9c29f58ff19 224 Pfam PF00005 ABC transporter 23 171 4.2E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1380 b72df405eb1c440926f9e9c29f58ff19 224 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1380 b72df405eb1c440926f9e9c29f58ff19 224 SUPERFAMILY SSF52540 3 223 2.01E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1380 b72df405eb1c440926f9e9c29f58ff19 224 SMART SM00382 32 222 1.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1145 502f9a1999f27d9ddcba558ae7e605dc 335 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 326 8.9E-94 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 CLM_1145 502f9a1999f27d9ddcba558ae7e605dc 335 Hamap MF_00540 Adenosine deaminase [add]. 1 331 58.917 T 13-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 CLM_1145 502f9a1999f27d9ddcba558ae7e605dc 335 SUPERFAMILY SSF51556 3 329 1.92E-87 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_1145 502f9a1999f27d9ddcba558ae7e605dc 335 Gene3D G3DSA:3.20.20.140 2 329 6.3E-105 T 13-10-2018 CLM_1145 502f9a1999f27d9ddcba558ae7e605dc 335 Pfam PF00962 Adenosine/AMP deaminase 6 324 1.1E-72 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 CLM_1178 f60e57c27f804015489f8942774203cf 162 SUPERFAMILY SSF52218 1 152 1.29E-21 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1178 f60e57c27f804015489f8942774203cf 162 Pfam PF12724 Flavodoxin domain 4 141 4.7E-32 T 13-10-2018 IPR026816 Flavodoxin domain CLM_1178 f60e57c27f804015489f8942774203cf 162 Gene3D G3DSA:3.40.50.360 1 160 7.5E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2886 3b53ed6d364c3eab59d150da11f7f488 158 Pfam PF07833 Copper amine oxidase N-terminal domain 64 156 4.9E-14 T 13-10-2018 IPR012854 Copper amine oxidase-like, N-terminal CLM_3830 cba578b5f02ef3debc4834b4cb3f9c9b 117 Pfam PF07561 Domain of Unknown Function (DUF1540) 73 113 7.9E-10 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 CLM_3830 cba578b5f02ef3debc4834b4cb3f9c9b 117 Pfam PF07561 Domain of Unknown Function (DUF1540) 6 38 2.0E-5 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 CLM_0083 4435813c6128f8fc2c2f675e7eb2e077 247 Gene3D G3DSA:1.10.4030.30 4 65 1.7E-5 T 13-10-2018 CLM_0083 4435813c6128f8fc2c2f675e7eb2e077 247 SUPERFAMILY SSF109998 3 142 6.28E-21 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CLM_0083 4435813c6128f8fc2c2f675e7eb2e077 247 Gene3D G3DSA:3.10.50.40 113 202 5.7E-33 T 13-10-2018 CLM_0083 4435813c6128f8fc2c2f675e7eb2e077 247 Pfam PF13616 PPIC-type PPIASE domain 107 202 1.1E-22 T 13-10-2018 CLM_0083 4435813c6128f8fc2c2f675e7eb2e077 247 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 142 162 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 CLM_0083 4435813c6128f8fc2c2f675e7eb2e077 247 SUPERFAMILY SSF54534 102 201 1.57E-29 T 13-10-2018 CLM_1564 58f472f9668751b5910e066eb2c62ff5 278 Gene3D G3DSA:3.40.1190.20 2 278 1.7E-69 T 13-10-2018 IPR029056 Ribokinase-like CLM_1564 58f472f9668751b5910e066eb2c62ff5 278 Pfam PF08543 Phosphomethylpyrimidine kinase 74 260 3.2E-24 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CLM_1564 58f472f9668751b5910e066eb2c62ff5 278 SUPERFAMILY SSF53613 5 276 6.24E-58 T 13-10-2018 IPR029056 Ribokinase-like CLM_0463 a3a0ad2579b1f242d4a74f0175b41f9a 112 SUPERFAMILY SSF50249 1 105 5.36E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_0463 a3a0ad2579b1f242d4a74f0175b41f9a 112 PIRSF PIRSF002070 1 109 1.1E-31 T 13-10-2018 CLM_0463 a3a0ad2579b1f242d4a74f0175b41f9a 112 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 104 2.7E-27 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CLM_0463 a3a0ad2579b1f242d4a74f0175b41f9a 112 Gene3D G3DSA:2.40.50.140 1 110 1.8E-34 T 13-10-2018 CLM_0463 a3a0ad2579b1f242d4a74f0175b41f9a 112 Pfam PF00436 Single-strand binding protein family 1 101 4.3E-29 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CLM_0463 a3a0ad2579b1f242d4a74f0175b41f9a 112 Hamap MF_00984 Single-stranded DNA-binding protein. 1 105 26.802 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 Pfam PF00294 pfkB family carbohydrate kinase 2 294 1.1E-67 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 Hamap MF_01987 Ribokinase [rbsK]. 1 301 26.261 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 PRINTS PR00990 Ribokinase signature 5 26 2.2E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 PRINTS PR00990 Ribokinase signature 32 51 2.2E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 PRINTS PR00990 Ribokinase signature 217 228 2.2E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 PRINTS PR00990 Ribokinase signature 104 117 2.2E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 PRINTS PR00990 Ribokinase signature 173 188 2.2E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 Gene3D G3DSA:3.40.1190.20 1 303 2.0E-100 T 13-10-2018 IPR029056 Ribokinase-like CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 SUPERFAMILY SSF53613 1 302 7.79E-82 T 13-10-2018 IPR029056 Ribokinase-like CLM_1805 faf98cc0842f31fe56ba06a746b24a48 303 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 3 299 1.3E-116 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CLM_3167 3f90f105493ea1fa650573a98ba2978a 55 Pfam PF13451 Probable zinc-ribbon domain 3 48 4.9E-26 T 13-10-2018 IPR025306 Probable zinc-binding domain CLM_1076 ab23e882936ccd4cef52a9dba7d971ad 84 SUPERFAMILY SSF109604 17 82 4.49E-9 T 13-10-2018 CLM_1076 ab23e882936ccd4cef52a9dba7d971ad 84 Gene3D G3DSA:1.10.3210.10 10 83 3.3E-10 T 13-10-2018 CLM_1076 ab23e882936ccd4cef52a9dba7d971ad 84 Pfam PF08668 HDOD domain 24 65 5.1E-8 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD CLM_1566 011cb8f473556271286898402347f005 254 Gene3D G3DSA:3.40.50.300 2 244 6.6E-67 T 13-10-2018 CLM_1566 011cb8f473556271286898402347f005 254 Pfam PF00005 ABC transporter 24 172 9.7E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1566 011cb8f473556271286898402347f005 254 SMART SM00382 33 221 1.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1566 011cb8f473556271286898402347f005 254 SUPERFAMILY SSF52540 5 225 1.09E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 SUPERFAMILY SSF46785 7 140 4.36E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 Gene3D G3DSA:1.10.10.10 4 141 1.8E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 SMART SM00347 25 125 2.2E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 5.8E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 5.8E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 5.8E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 5.8E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CLM_2457 6ec7ab8dd9a720523a11e24f6ec31cfc 143 Pfam PF01047 MarR family 32 89 7.8E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 122 1.1E-18 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 Gene3D G3DSA:3.30.70.260 333 396 1.7E-119 T 13-10-2018 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 SUPERFAMILY SSF51735 1 151 6.3E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 Gene3D G3DSA:3.30.360.10 129 332 1.7E-119 T 13-10-2018 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 Gene3D G3DSA:3.40.50.720 2 327 1.7E-119 T 13-10-2018 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 SUPERFAMILY SSF55347 130 295 2.22E-43 T 13-10-2018 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 PIRSF PIRSF000098 1 404 1.9E-122 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CLM_2091 1beecba94fae8ec552a4c11bbbb3534f 408 Pfam PF00742 Homoserine dehydrogenase 130 308 3.8E-56 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CLM_1634 2dccb09987ab3c963c82864ba8eaec3a 295 TIGRFAM TIGR01714 phage_rep_org_N: phage replisome organizer, putative, N-terminal region 10 124 1.6E-34 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain CLM_1634 2dccb09987ab3c963c82864ba8eaec3a 295 Pfam PF09681 N-terminal phage replisome organiser (Phage_rep_org_N) 10 128 5.1E-46 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain CLM_3925 b2a4f16352873b4416a68cbd3c9d2b79 93 SUPERFAMILY SSF50104 4 82 1.44E-14 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CLM_3925 b2a4f16352873b4416a68cbd3c9d2b79 93 Gene3D G3DSA:2.30.30.30 4 92 1.0E-8 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CLM_0167 7bf47e8fe27a909988b9974b68f76803 365 SUPERFAMILY SSF81343 38 130 3.27E-6 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CLM_0167 7bf47e8fe27a909988b9974b68f76803 365 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 9 361 6.8E-66 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_0167 7bf47e8fe27a909988b9974b68f76803 365 Pfam PF03845 Spore germination protein 9 325 2.1E-55 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 Gene3D G3DSA:1.10.150.20 49 91 9.1E-7 T 13-10-2018 CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 Pfam PF04002 RadC-like JAB domain 107 226 1.2E-44 T 13-10-2018 IPR025657 RadC-like JAB domain CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 Gene3D G3DSA:3.40.140.10 103 228 1.3E-45 T 13-10-2018 CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 177 182 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 SUPERFAMILY SSF47781 20 92 6.23E-8 T 13-10-2018 IPR010994 RuvA domain 2-like CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 TIGRFAM TIGR00608 radc: DNA repair protein RadC 15 228 3.0E-74 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 CLM_3399 2d8d6db84e46d5d5b3d06c7c37e90135 228 SUPERFAMILY SSF102712 160 196 6.15E-5 T 13-10-2018 CLM_3195 19fcb9e235c305bb4f5975c6f0fe4dbe 669 Gene3D G3DSA:2.60.40.10 54 158 4.4E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CLM_3195 19fcb9e235c305bb4f5975c6f0fe4dbe 669 Pfam PF08329 Chitinase A, N-terminal domain 86 158 5.9E-6 T 13-10-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CLM_3195 19fcb9e235c305bb4f5975c6f0fe4dbe 669 SUPERFAMILY SSF81296 60 158 5.32E-22 T 13-10-2018 IPR014756 Immunoglobulin E-set CLM_3430 771fd023cb2a33a38c87de078f9a0811 449 Pfam PF00656 Caspase domain 203 399 4.5E-18 T 13-10-2018 CLM_3430 771fd023cb2a33a38c87de078f9a0811 449 Gene3D G3DSA:3.40.50.1460 200 447 1.0E-25 T 13-10-2018 CLM_3430 771fd023cb2a33a38c87de078f9a0811 449 ProSitePatterns PS00018 EF-hand calcium-binding domain. 395 407 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site CLM_3430 771fd023cb2a33a38c87de078f9a0811 449 SUPERFAMILY SSF52129 198 391 3.14E-10 T 13-10-2018 IPR029030 Caspase-like domain superfamily CLM_2267 d9d7f337cac8ebce9da3e5457f94e5d9 353 SUPERFAMILY SSF53448 57 260 1.13E-19 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2267 d9d7f337cac8ebce9da3e5457f94e5d9 353 Pfam PF00535 Glycosyl transferase family 2 65 172 2.9E-8 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_2267 d9d7f337cac8ebce9da3e5457f94e5d9 353 Gene3D G3DSA:3.90.550.10 30 253 1.6E-16 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_4152 d5740c537aba7596f41f1db17e152907 111 SUPERFAMILY SSF54211 2 110 1.67E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CLM_4152 d5740c537aba7596f41f1db17e152907 111 Gene3D G3DSA:3.30.230.10 1 111 4.4E-34 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLM_4152 d5740c537aba7596f41f1db17e152907 111 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 110 17.047 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CLM_4152 d5740c537aba7596f41f1db17e152907 111 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 2 110 4.8E-26 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CLM_4152 d5740c537aba7596f41f1db17e152907 111 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 6 106 1.0E-20 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CLM_4152 d5740c537aba7596f41f1db17e152907 111 Pfam PF00825 Ribonuclease P 2 107 1.0E-30 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CLM_0437 bba8f1e40884f0bc23eafcd7bcb6eff8 310 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 6 309 25.772 T 13-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 CLM_0437 bba8f1e40884f0bc23eafcd7bcb6eff8 310 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 11 307 4.5E-109 T 13-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 CLM_0437 bba8f1e40884f0bc23eafcd7bcb6eff8 310 Pfam PF03116 NQR2, RnfD, RnfE family 8 307 9.7E-125 T 13-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 CLM_1830 9cb8340786ea9fa616cf4dfc17621097 216 Pfam PF03006 Haemolysin-III related 6 206 1.2E-47 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 CLM_1830 9cb8340786ea9fa616cf4dfc17621097 216 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 8 213 8.5E-65 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 CLM_1873 473ef3646e1e5ededea36bacac5a2c40 331 SUPERFAMILY SSF111331 86 155 9.68E-8 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLM_1873 473ef3646e1e5ededea36bacac5a2c40 331 PIRSF PIRSF018567 1 331 1.1E-128 T 13-10-2018 IPR011391 Acetoin catabolism kinase AcoX CLM_1873 473ef3646e1e5ededea36bacac5a2c40 331 Pfam PF01513 ATP-NAD kinase 3 204 3.9E-14 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CLM_2196 9c54c641201248b091381ddfd6681c2b 369 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 9 360 4.7E-74 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_2196 9c54c641201248b091381ddfd6681c2b 369 Gene3D G3DSA:1.20.1740.10 4 366 7.1E-8 T 13-10-2018 CLM_2196 9c54c641201248b091381ddfd6681c2b 369 Pfam PF03845 Spore germination protein 9 325 1.2E-68 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_1329 810a26c5673226f450d2cfa412ce5c5a 145 Gene3D G3DSA:1.10.10.10 1 145 8.0E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1329 810a26c5673226f450d2cfa412ce5c5a 145 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 2.2E-34 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_1329 810a26c5673226f450d2cfa412ce5c5a 145 Pfam PF02082 Transcriptional regulator 1 83 1.3E-24 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CLM_1329 810a26c5673226f450d2cfa412ce5c5a 145 SUPERFAMILY SSF46785 2 133 3.73E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3122 0ae9202428295daf8fcfc419a0cf4c58 277 Gene3D G3DSA:3.30.470.10 3 106 2.2E-14 T 13-10-2018 CLM_3122 0ae9202428295daf8fcfc419a0cf4c58 277 ProSitePatterns PS00770 Aminotransferases class-IV signature. 169 197 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 CLM_3122 0ae9202428295daf8fcfc419a0cf4c58 277 Gene3D G3DSA:3.20.10.10 113 270 1.4E-32 T 13-10-2018 CLM_3122 0ae9202428295daf8fcfc419a0cf4c58 277 Pfam PF01063 Amino-transferase class IV 31 242 6.6E-51 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 CLM_3122 0ae9202428295daf8fcfc419a0cf4c58 277 SUPERFAMILY SSF56752 27 272 9.29E-46 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 CLM_1161 7f3e94a769c20a6074904db819b5e600 424 Pfam PF09861 Domain of unknown function (DUF2088) 8 213 3.8E-78 T 13-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 CLM_1161 7f3e94a769c20a6074904db819b5e600 424 Gene3D G3DSA:3.90.226.30 6 418 3.6E-163 T 13-10-2018 CLM_1161 7f3e94a769c20a6074904db819b5e600 424 Gene3D G3DSA:3.40.50.11440 34 269 3.6E-163 T 13-10-2018 CLM_3419 5a21f4b4491b54a4c49ff79e572ccf62 235 Gene3D G3DSA:2.60.120.260 14 141 6.1E-7 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CLM_3143 167ba5ef3e54ddeb91bc5add6a33d2c0 297 Pfam PF01522 Polysaccharide deacetylase 88 195 4.3E-28 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_3143 167ba5ef3e54ddeb91bc5add6a33d2c0 297 Gene3D G3DSA:3.20.20.370 48 293 3.1E-60 T 13-10-2018 CLM_3143 167ba5ef3e54ddeb91bc5add6a33d2c0 297 SUPERFAMILY SSF88713 90 284 2.2E-46 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_1692 31ed74032fcb3df577fe1fd87951b16d 167 Pfam PF04999 Cell division protein FtsL 45 128 9.1E-7 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 SMART SM00646 67 171 2.4E-14 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 Gene3D G3DSA:2.30.30.40 195 254 3.7E-15 T 13-10-2018 CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 Gene3D G3DSA:3.40.630.40 1 176 3.0E-41 T 13-10-2018 CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 5 170 2.3E-24 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 Pfam PF08239 Bacterial SH3 domain 204 255 1.5E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 SUPERFAMILY SSF53187 3 172 2.86E-32 T 13-10-2018 CLM_3413 46add441d2579d9d2c92d0725209cb8c 259 SMART SM00287 196 258 7.9E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_2082 af0512fe38c08318d7959662bade3cdc 67 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 9 65 9.6E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2082 af0512fe38c08318d7959662bade3cdc 67 SUPERFAMILY SSF47413 12 65 4.38E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2082 af0512fe38c08318d7959662bade3cdc 67 Gene3D G3DSA:1.10.260.40 1 65 2.4E-8 T 13-10-2018 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 16 447 1.0E-158 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 Gene3D G3DSA:3.40.50.12160 15 152 6.7E-35 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 Gene3D G3DSA:3.80.30.20 156 391 3.3E-98 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 SUPERFAMILY SSF102114 155 382 1.02E-64 T 13-10-2018 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 Pfam PF01938 TRAM domain 388 448 7.1E-15 T 13-10-2018 IPR002792 TRAM domain CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 163 183 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 14 450 74.084 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 Pfam PF00919 Uncharacterized protein family UPF0004 16 116 1.2E-28 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 Pfam PF04055 Radical SAM superfamily 163 335 3.6E-33 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 16 448 1.9E-174 T 13-10-2018 CLM_1958 744d84b80c3c7fe0259244bfc5a13379 450 SMART SM00729 159 377 4.5E-64 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_1435 351ada748167fb98b8b9b54c778ce3d0 112 Pfam PF14034 Sporulation protein YtrH 7 105 6.1E-36 T 13-10-2018 IPR025689 Sporulation protein YtrH CLM_3364 1baa9005af42fc966412937d44128d0a 595 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 195 356 3.5E-19 T 13-10-2018 IPR004477 ComEC/Rec2-related protein CLM_3364 1baa9005af42fc966412937d44128d0a 595 Pfam PF03772 Competence protein 173 419 3.8E-43 T 13-10-2018 IPR004477 ComEC/Rec2-related protein CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 ProSitePatterns PS00692 NifH/frxC family signature 2. 122 135 - T 13-10-2018 IPR030655 NifH/chlL conserved site CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 SUPERFAMILY SSF52540 2 246 8.17E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 Gene3D G3DSA:3.40.50.300 1 247 2.3E-59 T 13-10-2018 CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 PIRSF PIRSF000363 1 249 7.9E-102 T 13-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 ProSitePatterns PS00746 NifH/frxC family signature 1. 83 95 - T 13-10-2018 IPR030655 NifH/chlL conserved site CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 PRINTS PR00091 Nitrogenase component II signature 29 44 5.8E-34 T 13-10-2018 CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 PRINTS PR00091 Nitrogenase component II signature 121 136 5.8E-34 T 13-10-2018 CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 PRINTS PR00091 Nitrogenase component II signature 7 20 5.8E-34 T 13-10-2018 CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 PRINTS PR00091 Nitrogenase component II signature 81 95 5.8E-34 T 13-10-2018 CLM_0807 c96093a4807790f2b068e0d8e3e11b67 249 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 2 246 4.6E-97 T 13-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 CLM_2904 95f556a34c7fb03229d69d8e68d7d6d8 162 Pfam PF12821 Threonine/Serine exporter, ThrE 6 134 4.6E-39 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE CLM_1241 1fe180070e978e35267812d572d88bd8 155 SUPERFAMILY SSF55729 15 143 1.2E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1241 1fe180070e978e35267812d572d88bd8 155 Gene3D G3DSA:3.40.630.30 1 153 1.0E-25 T 13-10-2018 CLM_1241 1fe180070e978e35267812d572d88bd8 155 Pfam PF00583 Acetyltransferase (GNAT) family 16 132 1.8E-10 T 13-10-2018 IPR000182 GNAT domain CLM_0371 0073e92f1e87c24f79c874afdd24c8a7 503 Gene3D G3DSA:3.40.710.10 33 375 1.2E-99 T 13-10-2018 CLM_0371 0073e92f1e87c24f79c874afdd24c8a7 503 SUPERFAMILY SSF56601 43 381 1.28E-74 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_0371 0073e92f1e87c24f79c874afdd24c8a7 503 Pfam PF00144 Beta-lactamase 46 360 1.1E-64 T 13-10-2018 IPR001466 Beta-lactamase-related CLM_3660 b55ccedb1bdc1a3d92520a884e7c7652 252 SMART SM00382 31 211 4.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_3660 b55ccedb1bdc1a3d92520a884e7c7652 252 SUPERFAMILY SSF52540 3 235 9.94E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3660 b55ccedb1bdc1a3d92520a884e7c7652 252 Pfam PF00005 ABC transporter 22 161 1.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_3660 b55ccedb1bdc1a3d92520a884e7c7652 252 Gene3D G3DSA:3.40.50.300 2 245 2.2E-63 T 13-10-2018 CLM_3211 9bec7262b13156afebb4d66e3af2a5ab 221 Pfam PF00665 Integrase core domain 60 172 2.6E-17 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CLM_3211 9bec7262b13156afebb4d66e3af2a5ab 221 Pfam PF13276 HTH-like domain 1 35 3.0E-7 T 13-10-2018 IPR025948 HTH-like domain CLM_3211 9bec7262b13156afebb4d66e3af2a5ab 221 Gene3D G3DSA:3.30.420.10 54 214 3.4E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_3211 9bec7262b13156afebb4d66e3af2a5ab 221 SUPERFAMILY SSF53098 52 215 5.31E-31 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_2341 28502253167a32d3a46f8e9ea3b5bf10 262 Pfam PF09234 Domain of unknown function (DUF1963) 41 261 2.8E-62 T 13-10-2018 IPR015315 Protein of unknown function DUF1963 CLM_2341 28502253167a32d3a46f8e9ea3b5bf10 262 Gene3D G3DSA:2.30.320.10 3 262 6.8E-91 T 13-10-2018 IPR035948 YwqG-like superfamily CLM_2341 28502253167a32d3a46f8e9ea3b5bf10 262 SUPERFAMILY SSF103032 6 262 6.15E-72 T 13-10-2018 IPR035948 YwqG-like superfamily CLM_2164 18a4b85a81f29517d6650bdbb0d728b6 440 Pfam PF01554 MatE 248 407 4.7E-24 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2164 18a4b85a81f29517d6650bdbb0d728b6 440 Pfam PF01554 MatE 23 183 1.7E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2164 18a4b85a81f29517d6650bdbb0d728b6 440 PIRSF PIRSF006603 1 440 3.3E-106 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2164 18a4b85a81f29517d6650bdbb0d728b6 440 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 418 1.8E-67 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0786 cfaa0f57d64481a472c9b8ea23f63720 225 Gene3D G3DSA:1.10.510.10 77 175 3.6E-6 T 13-10-2018 CLM_0786 cfaa0f57d64481a472c9b8ea23f63720 225 Gene3D G3DSA:3.30.200.20 49 110 3.6E-6 T 13-10-2018 CLM_0786 cfaa0f57d64481a472c9b8ea23f63720 225 SUPERFAMILY SSF56112 49 189 3.01E-10 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_3963 ab3c1111477793c4ca002fc2433e5430 49 Pfam PF00471 Ribosomal protein L33 3 49 1.8E-23 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3963 ab3c1111477793c4ca002fc2433e5430 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 49 1.8E-21 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3963 ab3c1111477793c4ca002fc2433e5430 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3963 ab3c1111477793c4ca002fc2433e5430 49 Gene3D G3DSA:2.20.28.120 1 49 6.4E-25 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3963 ab3c1111477793c4ca002fc2433e5430 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 19.67 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3963 ab3c1111477793c4ca002fc2433e5430 49 SUPERFAMILY SSF57829 1 49 3.66E-20 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CLM_3136 6968711a5a62bc8ae1507a71e1494533 187 PIRSF PIRSF016897 1 187 6.9E-72 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 CLM_3136 6968711a5a62bc8ae1507a71e1494533 187 Gene3D G3DSA:3.20.20.400 1 187 4.9E-70 T 13-10-2018 IPR035928 GlpP-like superfamily CLM_3136 6968711a5a62bc8ae1507a71e1494533 187 SUPERFAMILY SSF110391 11 186 3.53E-60 T 13-10-2018 IPR035928 GlpP-like superfamily CLM_3136 6968711a5a62bc8ae1507a71e1494533 187 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 12 185 1.6E-66 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 CLM_1160 2199614ee05b83abc26110b4a412e147 507 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 4 502 9.6E-138 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 CLM_1160 2199614ee05b83abc26110b4a412e147 507 Pfam PF02652 L-lactate permease 7 500 3.0E-142 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 CLM_1201 2ee8fe41e58b3d9c4c7b7f633c0d31e1 317 Pfam PF01032 FecCD transport family 10 311 2.4E-67 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_1201 2ee8fe41e58b3d9c4c7b7f633c0d31e1 317 Gene3D G3DSA:1.10.3470.10 3 316 2.1E-64 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1201 2ee8fe41e58b3d9c4c7b7f633c0d31e1 317 SUPERFAMILY SSF81345 5 312 1.83E-67 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1347 b4cb8a661916cb233837767ee73a0f20 153 Gene3D G3DSA:2.40.30.100 2 85 1.0E-30 T 13-10-2018 IPR037079 AF2212/PG0164-like superfamily CLM_1347 b4cb8a661916cb233837767ee73a0f20 153 SUPERFAMILY SSF141694 3 85 2.35E-23 T 13-10-2018 CLM_1347 b4cb8a661916cb233837767ee73a0f20 153 Pfam PF08922 Domain of unknown function (DUF1905) 6 83 2.2E-19 T 13-10-2018 IPR015018 Protein of unknown function DUF1905 CLM_1347 b4cb8a661916cb233837767ee73a0f20 153 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 92 149 2.2E-17 T 13-10-2018 CLM_0357 fde208caaa550778b1940f023cdbfa88 759 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 66 224 3.3E-46 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like CLM_3453 60ce2d49b33ed2a2e59a0cb165582fcf 67 Gene3D G3DSA:1.10.8.910 7 67 2.0E-23 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily CLM_3453 60ce2d49b33ed2a2e59a0cb165582fcf 67 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 45 59 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 CLM_3453 60ce2d49b33ed2a2e59a0cb165582fcf 67 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 22 31 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 CLM_3453 60ce2d49b33ed2a2e59a0cb165582fcf 67 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 7 66 1.4E-25 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 CLM_3295 bc64b7f61fa13db9f77c8c76c4c0207d 190 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 5 180 5.5E-21 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain CLM_3295 bc64b7f61fa13db9f77c8c76c4c0207d 190 Gene3D G3DSA:3.40.50.1110 1 189 3.4E-58 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CLM_3295 bc64b7f61fa13db9f77c8c76c4c0207d 190 SUPERFAMILY SSF52266 1 189 1.5E-39 T 13-10-2018 CLM_2938 4435f73cbd1f3562b7b4c67a81cfe9c1 597 Pfam PF10088 Uncharacterised protein conserved in bacteria (DUF2326) 461 594 1.2E-25 T 13-10-2018 IPR018760 Protein of unknown function DUF2326 CLM_3318 ccb54da0fb3f8dd45a2dcc028c6015dc 225 SUPERFAMILY SSF46785 152 223 1.57E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3318 ccb54da0fb3f8dd45a2dcc028c6015dc 225 Pfam PF13545 Crp-like helix-turn-helix domain 154 223 3.3E-14 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_3318 ccb54da0fb3f8dd45a2dcc028c6015dc 225 SMART SM00100 13 148 2.9E-8 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_3318 ccb54da0fb3f8dd45a2dcc028c6015dc 225 SUPERFAMILY SSF51206 1 147 1.14E-33 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CLM_3318 ccb54da0fb3f8dd45a2dcc028c6015dc 225 Gene3D G3DSA:2.60.120.1460 2 220 6.0E-68 T 13-10-2018 CLM_3318 ccb54da0fb3f8dd45a2dcc028c6015dc 225 Pfam PF00027 Cyclic nucleotide-binding domain 34 120 8.9E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_3371 b57755c28bccf69f287a1037cb790a92 462 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 7 458 7.1E-198 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CLM_3371 b57755c28bccf69f287a1037cb790a92 462 Pfam PF03841 L-seryl-tRNA selenium transferase 81 445 2.3E-164 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CLM_3371 b57755c28bccf69f287a1037cb790a92 462 Gene3D G3DSA:3.40.640.10 93 356 1.6E-179 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3371 b57755c28bccf69f287a1037cb790a92 462 Pfam PF12390 Selenocysteine synthase N terminal 7 46 9.8E-7 T 13-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CLM_3371 b57755c28bccf69f287a1037cb790a92 462 Gene3D G3DSA:3.90.1150.110 10 450 1.6E-179 T 13-10-2018 CLM_3371 b57755c28bccf69f287a1037cb790a92 462 SUPERFAMILY SSF53383 78 462 7.22E-51 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_3371 b57755c28bccf69f287a1037cb790a92 462 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 462 211.96 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CLM_0939 734de8227e956aaf616539d01c95c70e 62 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 1 56 1.2E-21 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_0939 734de8227e956aaf616539d01c95c70e 62 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 57 14.258 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_0939 734de8227e956aaf616539d01c95c70e 62 Pfam PF08141 Small acid-soluble spore protein H family 1 56 1.1E-15 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 CLM_3395 fff646ff34d4924d364a0ac05af6f4cc 924 Gene3D G3DSA:1.10.10.1230 78 255 1.5E-34 T 13-10-2018 CLM_3395 fff646ff34d4924d364a0ac05af6f4cc 924 SUPERFAMILY SSF56601 295 882 5.64E-80 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_3395 fff646ff34d4924d364a0ac05af6f4cc 924 Gene3D G3DSA:3.90.1310.10 45 338 1.5E-34 T 13-10-2018 CLM_3395 fff646ff34d4924d364a0ac05af6f4cc 924 SUPERFAMILY SSF56519 47 343 8.11E-38 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CLM_3395 fff646ff34d4924d364a0ac05af6f4cc 924 Pfam PF00905 Penicillin binding protein transpeptidase domain 380 876 1.5E-54 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CLM_3395 fff646ff34d4924d364a0ac05af6f4cc 924 Pfam PF03717 Penicillin-binding Protein dimerisation domain 55 329 2.9E-51 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CLM_3957 9e796364db4f5fa22727796463d737dd 123 SUPERFAMILY SSF54736 52 123 4.53E-24 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CLM_3957 9e796364db4f5fa22727796463d737dd 123 SUPERFAMILY SSF48300 1 59 9.68E-18 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3957 9e796364db4f5fa22727796463d737dd 123 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 123 25.146 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3957 9e796364db4f5fa22727796463d737dd 123 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 123 6.0E-20 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3957 9e796364db4f5fa22727796463d737dd 123 Gene3D G3DSA:1.20.5.710 1 52 4.4E-22 T 13-10-2018 CLM_3957 9e796364db4f5fa22727796463d737dd 123 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 57 123 2.6E-29 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3957 9e796364db4f5fa22727796463d737dd 123 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 2 48 6.6E-22 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3957 9e796364db4f5fa22727796463d737dd 123 Gene3D G3DSA:3.30.1390.10 53 123 3.2E-30 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CLM_3957 9e796364db4f5fa22727796463d737dd 123 TIGRFAM TIGR00855 L12: ribosomal protein bL12 2 123 7.3E-48 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 Pfam PF13638 PIN domain 5 140 1.3E-33 T 13-10-2018 IPR002716 PIN domain CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 Gene3D G3DSA:3.40.50.1010 2 144 8.4E-21 T 13-10-2018 CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 SMART SM00670 3 128 6.3E-9 T 13-10-2018 IPR002716 PIN domain CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 SUPERFAMILY SSF88723 3 144 2.75E-13 T 13-10-2018 IPR029060 PIN-like domain superfamily CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 Pfam PF02562 PhoH-like protein 234 451 5.8E-51 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 Gene3D G3DSA:3.40.50.300 232 456 3.7E-69 T 13-10-2018 CLM_0569 1a5a603d0034b2a1215bcdec19da868d 458 SUPERFAMILY SSF52540 125 417 2.33E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2262 52203d007d24a12991fbd203e01999cb 74 Gene3D G3DSA:1.10.287.950 1 72 1.2E-23 T 13-10-2018 CLM_2262 52203d007d24a12991fbd203e01999cb 74 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 18 72 3.7E-18 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2262 52203d007d24a12991fbd203e01999cb 74 SUPERFAMILY SSF58104 7 71 1.31E-23 T 13-10-2018 CLM_3387 cfd7f949476d884fece20faaa49dbde1 237 Pfam PF10105 Uncharacterized protein conserved in bacteria (DUF2344) 4 190 3.1E-53 T 13-10-2018 IPR018768 Domain of unknown function DUF2344 CLM_3387 cfd7f949476d884fece20faaa49dbde1 237 TIGRFAM TIGR03936 sam_1_link_chp: radical SAM-linked protein 4 220 6.8E-66 T 13-10-2018 IPR018768 Domain of unknown function DUF2344 CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 SUPERFAMILY SSF51055 874 919 6.93E-11 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 SMART SM01276 55 350 3.6E-60 T 13-10-2018 IPR031161 Peptidase family M60 domain CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 SMART SM00495 876 920 4.1E-10 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 140 373 4.0E-14 T 13-10-2018 IPR031161 Peptidase family M60 domain CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 Pfam PF03272 Putative mucin or carbohydrate-binding module 749 863 1.7E-29 T 13-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 Pfam PF03272 Putative mucin or carbohydrate-binding module 555 665 5.2E-28 T 13-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain CLM_2311 916fdd413ffa4a3a527f1e6b3281f43e 925 Gene3D G3DSA:2.10.10.20 861 924 7.0E-13 T 13-10-2018 CLM_0660 2e30fdc9129bf913857cde460a912956 383 Pfam PF02810 SEC-C motif 359 376 1.5E-7 T 13-10-2018 IPR004027 SEC-C motif CLM_0660 2e30fdc9129bf913857cde460a912956 383 SUPERFAMILY SSF103642 357 377 7.36E-7 T 13-10-2018 CLM_0660 2e30fdc9129bf913857cde460a912956 383 Gene3D G3DSA:3.10.450.50 321 377 1.0E-7 T 13-10-2018 CLM_1598 ef24856bee3f6c26a70e97cc1d4a6030 501 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 359 494 3.8E-11 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_1598 ef24856bee3f6c26a70e97cc1d4a6030 501 PIRSF PIRSF038958 3 499 3.9E-69 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLM_1598 ef24856bee3f6c26a70e97cc1d4a6030 501 Pfam PF01943 Polysaccharide biosynthesis protein 10 308 6.1E-15 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CLM_1598 ef24856bee3f6c26a70e97cc1d4a6030 501 TIGRFAM TIGR02900 spore_V_B: stage V sporulation protein B 8 493 3.3E-187 T 13-10-2018 IPR014249 Sporulation stage V protein B CLM_2591 7564c9cf769157a7fb0d36aaea314f7f 306 SMART SM00382 29 212 6.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2591 7564c9cf769157a7fb0d36aaea314f7f 306 Pfam PF00005 ABC transporter 20 161 7.5E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2591 7564c9cf769157a7fb0d36aaea314f7f 306 SUPERFAMILY SSF52540 4 224 4.24E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2591 7564c9cf769157a7fb0d36aaea314f7f 306 Gene3D G3DSA:3.40.50.300 1 269 7.2E-60 T 13-10-2018 CLM_2591 7564c9cf769157a7fb0d36aaea314f7f 306 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1180 a5e01d38dedb49d548bb2ff26df87338 229 Pfam PF13545 Crp-like helix-turn-helix domain 154 220 1.1E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_1180 a5e01d38dedb49d548bb2ff26df87338 229 SUPERFAMILY SSF51206 25 139 5.24E-25 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CLM_1180 a5e01d38dedb49d548bb2ff26df87338 229 Gene3D G3DSA:1.10.10.10 150 222 3.1E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1180 a5e01d38dedb49d548bb2ff26df87338 229 Gene3D G3DSA:2.60.120.10 15 144 1.5E-17 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_1180 a5e01d38dedb49d548bb2ff26df87338 229 SUPERFAMILY SSF46785 152 222 1.5E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1180 a5e01d38dedb49d548bb2ff26df87338 229 Pfam PF00027 Cyclic nucleotide-binding domain 35 116 6.7E-10 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_2240 96fed20deb9338c3dcef29029a30f001 73 PIRSF PIRSF037246 1 73 3.9E-37 T 13-10-2018 IPR017154 Uncharacterised conserved protein UCP037246 CLM_2240 96fed20deb9338c3dcef29029a30f001 73 Gene3D G3DSA:2.30.31.70 1 72 1.4E-33 T 13-10-2018 CLM_2240 96fed20deb9338c3dcef29029a30f001 73 Pfam PF02229 Transcriptional Coactivator p15 (PC4) 19 67 8.1E-12 T 13-10-2018 IPR003173 Transcriptional coactivator p15 (PC4) GO:0003677|GO:0006355 CLM_3480 51e5b4bf8a73c6788b2cd6441c1fefce 220 SMART SM00567 E-Z type HEAT repeats 109 138 0.18 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 CLM_3480 51e5b4bf8a73c6788b2cd6441c1fefce 220 SMART SM00567 E-Z type HEAT repeats 140 169 6.4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 CLM_3480 51e5b4bf8a73c6788b2cd6441c1fefce 220 Pfam PF14493 Helix-turn-helix domain 19 89 4.3E-6 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CLM_3480 51e5b4bf8a73c6788b2cd6441c1fefce 220 Gene3D G3DSA:1.25.10.10 56 219 4.1E-17 T 13-10-2018 IPR011989 Armadillo-like helical CLM_3480 51e5b4bf8a73c6788b2cd6441c1fefce 220 SUPERFAMILY SSF48371 94 211 1.64E-17 T 13-10-2018 IPR016024 Armadillo-type fold CLM_3480 51e5b4bf8a73c6788b2cd6441c1fefce 220 Pfam PF13646 HEAT repeats 99 182 1.2E-12 T 13-10-2018 CLM_0356 fa9211587d4d4eb55ab9811c20a65109 139 Pfam PF04138 GtrA-like protein 21 138 3.2E-25 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 CLM_2562 5697da7a29b7a870171e06b5e546b09b 267 Gene3D G3DSA:3.40.50.300 60 244 4.1E-51 T 13-10-2018 CLM_2562 5697da7a29b7a870171e06b5e546b09b 267 Pfam PF01695 IstB-like ATP binding protein 114 232 1.2E-15 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CLM_2562 5697da7a29b7a870171e06b5e546b09b 267 SMART SM00382 112 238 4.3E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2562 5697da7a29b7a870171e06b5e546b09b 267 SUPERFAMILY SSF52540 78 237 2.12E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3473 c2c4cff4d8b79bf38f00ab5004f9c175 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 2 372 3.2E-154 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CLM_3473 c2c4cff4d8b79bf38f00ab5004f9c175 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 2 371 3.4E-148 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CLM_3473 c2c4cff4d8b79bf38f00ab5004f9c175 376 SUPERFAMILY SSF51713 1 370 1.14E-150 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CLM_3473 c2c4cff4d8b79bf38f00ab5004f9c175 376 Gene3D G3DSA:3.20.20.105 1 375 7.3E-163 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CLM_3473 c2c4cff4d8b79bf38f00ab5004f9c175 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 371 53.621 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CLM_3473 c2c4cff4d8b79bf38f00ab5004f9c175 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 367 3.6E-88 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CLM_1655 44109b1ac92663420ca9449e55950044 160 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 40 149 1.5E-17 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CLM_1655 44109b1ac92663420ca9449e55950044 160 Pfam PF05119 Phage terminase, small subunit 52 145 3.0E-18 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CLM_3017 339202749f56f2f2af3b0f1545cdcf03 247 SUPERFAMILY SSF103088 120 237 7.72E-32 T 13-10-2018 IPR036737 OmpA-like domain superfamily CLM_3017 339202749f56f2f2af3b0f1545cdcf03 247 Gene3D G3DSA:3.30.1330.60 80 247 6.6E-50 T 13-10-2018 IPR036737 OmpA-like domain superfamily CLM_3017 339202749f56f2f2af3b0f1545cdcf03 247 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 59 7.4E-20 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain CLM_3017 339202749f56f2f2af3b0f1545cdcf03 247 Pfam PF00691 OmpA family 132 231 4.9E-21 T 13-10-2018 IPR006665 OmpA-like domain CLM_3119 bc23bd488217f0f6a25f9649e6e8a169 677 Gene3D G3DSA:3.30.30.80 2 51 1.6E-6 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily CLM_3119 bc23bd488217f0f6a25f9649e6e8a169 677 Pfam PF03961 Flagellar Assembly Protein A 161 648 7.7E-90 T 13-10-2018 IPR005646 Flagellar assembly protein A CLM_3119 bc23bd488217f0f6a25f9649e6e8a169 677 SMART SM01245 5 54 9.6E-13 T 13-10-2018 IPR032782 Jag, N-terminal CLM_3119 bc23bd488217f0f6a25f9649e6e8a169 677 Pfam PF14804 Jag N-terminus 7 43 4.3E-9 T 13-10-2018 IPR032782 Jag, N-terminal CLM_3909 9aaee7fd3780e423baaaa49cd8f370b8 280 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 9 279 5.2E-100 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CLM_3909 9aaee7fd3780e423baaaa49cd8f370b8 280 Pfam PF05681 Fumarate hydratase (Fumerase) 11 277 3.7E-117 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CLM_2351 e9e0f7f9b5a092d8e3ea2ab0d611507b 664 PIRSF PIRSF018968 1 664 1.4E-69 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 CLM_2351 e9e0f7f9b5a092d8e3ea2ab0d611507b 664 Pfam PF02687 FtsX-like permease family 83 179 7.9E-11 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0949 d1e4d2317a68196f110a5a64221f21e9 138 Pfam PF00589 Phage integrase family 6 120 6.1E-27 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CLM_0949 d1e4d2317a68196f110a5a64221f21e9 138 SUPERFAMILY SSF56349 5 128 2.18E-32 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CLM_0949 d1e4d2317a68196f110a5a64221f21e9 138 Gene3D G3DSA:1.10.443.10 1 128 1.4E-35 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_0742 828d5533b822e0ad73a5d2cd6aa67bf1 157 Gene3D G3DSA:2.30.110.10 2 156 1.3E-35 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_0742 828d5533b822e0ad73a5d2cd6aa67bf1 157 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 17 154 1.4E-19 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related CLM_0742 828d5533b822e0ad73a5d2cd6aa67bf1 157 SUPERFAMILY SSF50475 4 156 4.3E-38 T 13-10-2018 CLM_0322 1cb489c0fee9e72f2d905fb116150b5c 188 SUPERFAMILY SSF52833 50 186 6.91E-36 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_0322 1cb489c0fee9e72f2d905fb116150b5c 188 Gene3D G3DSA:3.40.30.10 25 188 3.5E-44 T 13-10-2018 CLM_0322 1cb489c0fee9e72f2d905fb116150b5c 188 Pfam PF00578 AhpC/TSA family 49 168 1.3E-24 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 4 341 3.0E-142 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 SUPERFAMILY SSF52540 4 336 5.04E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 13-10-2018 IPR001482 Type II/IV secretion system protein CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 SMART SM00382 122 247 4.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 Pfam PF00437 Type II/IV secretion system protein 90 270 5.8E-41 T 13-10-2018 IPR001482 Type II/IV secretion system protein CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 Gene3D G3DSA:3.40.50.300 101 349 1.7E-97 T 13-10-2018 CLM_2843 6beb9e65ab5056ef202f4729a4abc113 350 Gene3D G3DSA:3.30.450.90 1 100 1.4E-31 T 13-10-2018 CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 Gene3D G3DSA:1.20.1560.10 1 317 1.5E-83 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 SUPERFAMILY SSF52540 324 571 5.54E-94 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 SUPERFAMILY SSF90123 5 318 2.22E-80 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 Pfam PF00005 ABC transporter 352 501 7.7E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 Gene3D G3DSA:3.40.50.300 321 573 4.4E-93 T 13-10-2018 CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 SMART SM00382 361 562 3.8E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0382 b2096d7afe670fab94bf4bb87299b282 575 Pfam PF00664 ABC transporter transmembrane region 19 288 9.6E-60 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_3562 4677b2c03c9410ab6f41442f206ccef0 309 SUPERFAMILY SSF161098 91 292 1.94E-17 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3562 4677b2c03c9410ab6f41442f206ccef0 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 9.0E-42 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_3562 4677b2c03c9410ab6f41442f206ccef0 309 Gene3D G3DSA:1.10.3720.10 85 299 1.8E-18 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2255 7aafd3430b1db9cbac5146b01ef8c445 411 SUPERFAMILY SSF50978 90 352 1.54E-9 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 CLM_2255 7aafd3430b1db9cbac5146b01ef8c445 411 Gene3D G3DSA:2.130.10.10 67 357 3.3E-7 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CLM_0229 3ba7b761542060950649368ad1385502 228 SUPERFAMILY SSF56300 3 218 2.17E-27 T 13-10-2018 CLM_0229 3ba7b761542060950649368ad1385502 228 PIRSF PIRSF033094 1 228 2.9E-99 T 13-10-2018 IPR014578 Predicted phosphoesterase, CT488 type CLM_0229 3ba7b761542060950649368ad1385502 228 Pfam PF00149 Calcineurin-like phosphoesterase 4 195 1.1E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CLM_1118 166cbea2efaef7f19cec849f5d09ea6e 256 Gene3D G3DSA:3.40.50.300 2 252 3.4E-67 T 13-10-2018 CLM_1118 166cbea2efaef7f19cec849f5d09ea6e 256 SMART SM00382 27 212 3.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1118 166cbea2efaef7f19cec849f5d09ea6e 256 Pfam PF00005 ABC transporter 18 167 2.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1118 166cbea2efaef7f19cec849f5d09ea6e 256 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1118 166cbea2efaef7f19cec849f5d09ea6e 256 SUPERFAMILY SSF52540 3 225 1.54E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0916 9edf06e55baa8dabdcb21fbd0d0aa0be 378 Pfam PF12679 ABC-2 family transporter protein 5 376 1.5E-19 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_3634 f2f63817692b0e0a03edcb8fd371b777 318 Gene3D G3DSA:1.10.10.10 1 63 4.6E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3634 f2f63817692b0e0a03edcb8fd371b777 318 Pfam PF13280 WYL domain 145 310 9.5E-38 T 13-10-2018 IPR026881 WYL domain CLM_3634 f2f63817692b0e0a03edcb8fd371b777 318 Pfam PF08279 HTH domain 8 58 1.4E-10 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CLM_3634 f2f63817692b0e0a03edcb8fd371b777 318 SUPERFAMILY SSF46785 6 58 5.28E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3396 f8444cd784fe28c8a9dc58e9935d2ff9 163 PIRSF PIRSF037497 2 163 2.2E-38 T 13-10-2018 IPR017225 Cell shape-determining protein MreD, predicted CLM_3396 f8444cd784fe28c8a9dc58e9935d2ff9 163 Pfam PF04093 rod shape-determining protein MreD 5 154 1.8E-19 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CLM_3396 f8444cd784fe28c8a9dc58e9935d2ff9 163 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 5 153 2.0E-27 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CLM_3859 c058c1070cf568f400d3142bd40ce61a 107 Gene3D G3DSA:1.10.1220.10 1 89 6.2E-22 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CLM_3859 c058c1070cf568f400d3142bd40ce61a 107 SUPERFAMILY SSF47598 5 46 5.56E-5 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CLM_2320 c616ca4b816a50df08ed706f23f8ec14 100 SMART SM00877 33 100 1.8E-7 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2320 c616ca4b816a50df08ed706f23f8ec14 100 Gene3D G3DSA:3.30.70.1710 1 100 2.4E-36 T 13-10-2018 CLM_2320 c616ca4b816a50df08ed706f23f8ec14 100 Pfam PF00936 BMC domain 34 92 1.4E-6 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CLM_2320 c616ca4b816a50df08ed706f23f8ec14 100 SUPERFAMILY SSF143414 33 97 1.19E-9 T 13-10-2018 IPR037233 CcmK-like superfamily CLM_0457 d484142668847196b0934e7e77f702cc 248 Pfam PF00005 ABC transporter 19 172 1.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0457 d484142668847196b0934e7e77f702cc 248 Gene3D G3DSA:3.40.50.300 1 247 1.2E-66 T 13-10-2018 CLM_0457 d484142668847196b0934e7e77f702cc 248 SMART SM00382 28 220 2.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0457 d484142668847196b0934e7e77f702cc 248 SUPERFAMILY SSF52540 4 235 2.97E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0457 d484142668847196b0934e7e77f702cc 248 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2983 f3221722cff7b80d71746b0fa928575c 168 Gene3D G3DSA:1.10.1760.20 2 163 9.5E-8 T 13-10-2018 CLM_0363 0710ee478f7d46f9481b99dabc393bee 456 PIRSF PIRSF006603 1 447 2.1E-93 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0363 0710ee478f7d46f9481b99dabc393bee 456 Pfam PF01554 MatE 20 180 5.4E-34 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0363 0710ee478f7d46f9481b99dabc393bee 456 Pfam PF01554 MatE 244 403 3.6E-24 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0363 0710ee478f7d46f9481b99dabc393bee 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 415 7.6E-65 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0882 d5e66502746dd10cfec00e8b831e0022 179 Gene3D G3DSA:1.10.10.10 38 179 7.4E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0882 d5e66502746dd10cfec00e8b831e0022 179 SUPERFAMILY SSF88659 104 177 1.03E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_0882 d5e66502746dd10cfec00e8b831e0022 179 SUPERFAMILY SSF88946 3 76 3.14E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CLM_0882 d5e66502746dd10cfec00e8b831e0022 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 175 3.5E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CLM_0882 d5e66502746dd10cfec00e8b831e0022 179 Pfam PF04545 Sigma-70, region 4 124 173 1.1E-5 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CLM_0882 d5e66502746dd10cfec00e8b831e0022 179 Pfam PF04542 Sigma-70 region 2 20 71 6.7E-5 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 Pfam PF00919 Uncharacterized protein family UPF0004 2 97 3.7E-25 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 2 425 8.3E-134 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 Gene3D G3DSA:3.40.50.12160 1 134 1.1E-22 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 Pfam PF04055 Radical SAM superfamily 148 318 1.9E-26 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 SMART SM00729 142 360 8.2E-55 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 146 166 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 5 416 8.6E-140 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 Gene3D G3DSA:3.80.30.20 139 374 8.7E-87 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3350 312e09bdaaf08912c33f2aac9401cac4 432 SUPERFAMILY SSF102114 116 364 1.31E-56 T 13-10-2018 CLM_3445 9587394ef0c54f5a6c2e96c3a7b065e8 301 TIGRFAM TIGR01714 phage_rep_org_N: phage replisome organizer, putative, N-terminal region 15 134 1.4E-42 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain CLM_3445 9587394ef0c54f5a6c2e96c3a7b065e8 301 Pfam PF09681 N-terminal phage replisome organiser (Phage_rep_org_N) 15 134 7.3E-55 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain CLM_1344 a1966f25879b86bc81234daea8a091c3 54 Pfam PF12655 Domain of unknown function (DUF3787) 3 54 1.2E-28 T 13-10-2018 IPR024209 Protein of unknown function DUF3787 CLM_3313 962bea9680e47bddf0a515ca4d70c3b9 123 Pfam PF13346 ABC-2 family transporter protein 3 121 1.9E-18 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 Gene3D G3DSA:3.30.70.370 371 396 7.9E-20 T 13-10-2018 CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 Gene3D G3DSA:3.30.70.370 587 635 7.0E-7 T 13-10-2018 CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 SUPERFAMILY SSF56672 192 654 7.67E-82 T 13-10-2018 CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 Gene3D G3DSA:1.10.150.20 397 505 7.9E-20 T 13-10-2018 CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 Gene3D G3DSA:1.10.150.20 548 586 7.0E-7 T 13-10-2018 CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 Pfam PF00476 DNA polymerase family A 226 630 4.1E-28 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 SUPERFAMILY SSF53098 5 184 7.59E-5 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_2673 e0debed28826f4fd5810bfb4e2141577 655 SMART SM00482 374 620 3.8E-32 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CLM_3695 9320b6f036817030da5ea3777a4f0b98 199 Pfam PF01725 Ham1 family 5 192 1.9E-57 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 CLM_3695 9320b6f036817030da5ea3777a4f0b98 199 SUPERFAMILY SSF52972 2 195 4.97E-66 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CLM_3695 9320b6f036817030da5ea3777a4f0b98 199 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 194 4.5E-58 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 CLM_3695 9320b6f036817030da5ea3777a4f0b98 199 Hamap MF_01405 dITP/XTP pyrophosphatase. 3 197 46.657 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 CLM_3695 9320b6f036817030da5ea3777a4f0b98 199 Gene3D G3DSA:3.90.950.10 1 198 5.9E-72 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CLM_3658 a1392a7b3b9a5508f026c4ae7b43f77b 382 Gene3D G3DSA:1.20.1270.370 16 221 1.1E-33 T 13-10-2018 CLM_3658 a1392a7b3b9a5508f026c4ae7b43f77b 382 Gene3D G3DSA:3.40.50.11890 30 156 1.1E-33 T 13-10-2018 CLM_3658 a1392a7b3b9a5508f026c4ae7b43f77b 382 Gene3D G3DSA:3.40.50.11900 239 382 1.5E-41 T 13-10-2018 CLM_3658 a1392a7b3b9a5508f026c4ae7b43f77b 382 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 38 382 2.4E-80 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_1119 af9f185828fca856b57f5184a9510bce 359 Gene3D G3DSA:1.10.3470.10 15 357 2.8E-99 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1119 af9f185828fca856b57f5184a9510bce 359 SUPERFAMILY SSF81345 11 351 6.54E-83 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1119 af9f185828fca856b57f5184a9510bce 359 Pfam PF01032 FecCD transport family 29 351 3.5E-98 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_2587 d2a82b4e7833bedd68918e3a9c21a5ab 319 Pfam PF12833 Helix-turn-helix domain 239 317 3.3E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2587 d2a82b4e7833bedd68918e3a9c21a5ab 319 SMART SM00342 232 315 1.1E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CLM_2587 d2a82b4e7833bedd68918e3a9c21a5ab 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 315 1.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_2587 d2a82b4e7833bedd68918e3a9c21a5ab 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 284 299 1.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CLM_2587 d2a82b4e7833bedd68918e3a9c21a5ab 319 SUPERFAMILY SSF46689 268 318 2.28E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2587 d2a82b4e7833bedd68918e3a9c21a5ab 319 Gene3D G3DSA:1.10.10.60 213 317 2.8E-26 T 13-10-2018 CLM_2713 8ac9a924209c154e49f4b9c0ca4ee595 90 Pfam PF04296 Protein of unknown function (DUF448) 9 82 1.6E-30 T 13-10-2018 IPR007393 Domain of unknown function DUF448 CLM_2713 8ac9a924209c154e49f4b9c0ca4ee595 90 Gene3D G3DSA:3.30.1230.10 1 90 1.0E-36 T 13-10-2018 IPR035931 YlxR-like superfamily CLM_2713 8ac9a924209c154e49f4b9c0ca4ee595 90 SUPERFAMILY SSF64376 4 86 1.96E-28 T 13-10-2018 IPR035931 YlxR-like superfamily CLM_0186 3a6a5b6343b86e315a3e4534badb5658 150 SUPERFAMILY SSF52788 1 144 2.88E-32 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLM_0186 3a6a5b6343b86e315a3e4534badb5658 150 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 135 1.6E-26 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0186 3a6a5b6343b86e315a3e4534badb5658 150 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 115 130 9.0E-6 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CLM_0186 3a6a5b6343b86e315a3e4534badb5658 150 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 9.0E-6 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CLM_0186 3a6a5b6343b86e315a3e4534badb5658 150 SMART SM00226 1 143 7.3E-25 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0186 3a6a5b6343b86e315a3e4534badb5658 150 Gene3D G3DSA:3.40.50.2300 1 149 1.0E-39 T 13-10-2018 CLM_0314 7e272318f67fca96a3869eda86ce7cad 117 TIGRFAM TIGR02839 spore_V_AE: stage V sporulation protein AE 4 117 4.5E-45 T 13-10-2018 IPR014204 Sporulation stage V, protein AE CLM_0314 7e272318f67fca96a3869eda86ce7cad 117 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 4 112 3.5E-36 T 13-10-2018 IPR005562 SpoVA CLM_0631 e1855b44b7aa0360b13d46dae556c697 169 SUPERFAMILY SSF51161 2 164 4.02E-46 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_0631 e1855b44b7aa0360b13d46dae556c697 169 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 10 44 0.002 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_0631 e1855b44b7aa0360b13d46dae556c697 169 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 1.8E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_0631 e1855b44b7aa0360b13d46dae556c697 169 Gene3D G3DSA:2.160.10.10 1 169 8.9E-62 T 13-10-2018 CLM_2058 46e1fa3c9288ddc4ab321d6637d464e0 572 Gene3D G3DSA:3.40.50.300 51 260 1.7E-16 T 13-10-2018 CLM_2058 46e1fa3c9288ddc4ab321d6637d464e0 572 Pfam PF03354 Phage Terminase 78 547 4.7E-74 T 13-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type CLM_2477 3b392e0cbbfec2e0743bc0bc3fc5da9e 138 Pfam PF07485 Domain of Unknown Function (DUF1259) 10 129 3.2E-36 T 13-10-2018 IPR011094 Uncharacterised protein family, LppY/LpqO CLM_1080 d38432900c303f7de864f2e2f2cd2876 233 Gene3D G3DSA:1.10.3290.10 1 233 9.0E-69 T 13-10-2018 IPR036597 Fido-like domain superfamily CLM_1080 d38432900c303f7de864f2e2f2cd2876 233 Pfam PF02661 Fic/DOC family 82 180 6.1E-21 T 13-10-2018 IPR003812 Fido domain CLM_1080 d38432900c303f7de864f2e2f2cd2876 233 SUPERFAMILY SSF140931 59 219 1.7E-37 T 13-10-2018 IPR036597 Fido-like domain superfamily CLM_2469 37a6d2a86f95b32c6026a7071cab343b 186 Gene3D G3DSA:1.10.1760.20 1 181 4.1E-48 T 13-10-2018 CLM_2469 37a6d2a86f95b32c6026a7071cab343b 186 PIRSF PIRSF016661 1 186 3.7E-40 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CLM_2469 37a6d2a86f95b32c6026a7071cab343b 186 Pfam PF02632 BioY family 35 176 1.6E-31 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CLM_1001 4d6ab20e8abf1821033c9cda72662309 209 Pfam PF00881 Nitroreductase family 8 184 2.5E-22 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1001 4d6ab20e8abf1821033c9cda72662309 209 SUPERFAMILY SSF55469 4 203 8.51E-46 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_1001 4d6ab20e8abf1821033c9cda72662309 209 Gene3D G3DSA:3.40.109.10 1 206 7.0E-55 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_2743 a63eb7e1805cbd0e8e396aa3093846cb 110 SUPERFAMILY SSF88659 1 93 7.85E-30 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CLM_2743 a63eb7e1805cbd0e8e396aa3093846cb 110 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 1 98 1.1E-28 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CLM_2743 a63eb7e1805cbd0e8e396aa3093846cb 110 Hamap MF_00245 UPF0122 protein . 1 106 18.794 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CLM_2743 a63eb7e1805cbd0e8e396aa3093846cb 110 Gene3D G3DSA:1.10.10.10 1 106 6.9E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 SMART SM00487 22 221 7.6E-49 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 Gene3D G3DSA:3.40.50.300 217 421 1.3E-43 T 13-10-2018 CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 Pfam PF00271 Helicase conserved C-terminal domain 230 337 7.3E-26 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 SMART SM00490 257 338 2.0E-25 T 13-10-2018 IPR001650 Helicase, C-terminal CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 Pfam PF00270 DEAD/DEAH box helicase 27 191 7.9E-42 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 Gene3D G3DSA:3.40.50.300 1 216 3.4E-65 T 13-10-2018 CLM_1936 03355ea2117cff554c29ad72bfaccef1 421 SUPERFAMILY SSF52540 71 359 1.23E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2827 9792f811cef1e6c07beb215eed4111a9 249 SUPERFAMILY SSF52540 2 236 1.54E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2827 9792f811cef1e6c07beb215eed4111a9 249 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 4 249 9.8E-130 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 CLM_2827 9792f811cef1e6c07beb215eed4111a9 249 SMART SM00382 28 228 8.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_2827 9792f811cef1e6c07beb215eed4111a9 249 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_2827 9792f811cef1e6c07beb215eed4111a9 249 Pfam PF00005 ABC transporter 19 174 2.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2827 9792f811cef1e6c07beb215eed4111a9 249 Gene3D G3DSA:3.40.50.300 1 247 1.1E-65 T 13-10-2018 CLM_1146 45b1e40342b68a960ecf4dcc0d838aa4 722 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 499 702 4.0E-43 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal CLM_1146 45b1e40342b68a960ecf4dcc0d838aa4 722 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 14 176 5.6E-47 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal CLM_0683 c926b9c0bbed953c841de0be88a94f34 70 Gene3D G3DSA:1.10.260.40 1 64 5.4E-25 T 13-10-2018 CLM_0683 c926b9c0bbed953c841de0be88a94f34 70 Pfam PF01381 Helix-turn-helix 5 59 5.3E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0683 c926b9c0bbed953c841de0be88a94f34 70 SMART SM00530 4 59 7.2E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0683 c926b9c0bbed953c841de0be88a94f34 70 SUPERFAMILY SSF47413 2 62 4.29E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2644 1588b3e1d2822af6b75e2f7186935486 324 SUPERFAMILY SSF69279 36 132 2.27E-9 T 13-10-2018 CLM_1965 d94d0f3eeeb77c4f70a56b6e1241b57d 217 Hamap MF_00238 Cytidylate kinase [cmk]. 4 217 32.398 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CLM_1965 d94d0f3eeeb77c4f70a56b6e1241b57d 217 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 211 1.1E-77 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CLM_1965 d94d0f3eeeb77c4f70a56b6e1241b57d 217 Pfam PF02224 Cytidylate kinase 6 215 4.3E-78 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CLM_1965 d94d0f3eeeb77c4f70a56b6e1241b57d 217 SUPERFAMILY SSF52540 1 215 9.23E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1965 d94d0f3eeeb77c4f70a56b6e1241b57d 217 Gene3D G3DSA:3.40.50.300 2 217 4.1E-84 T 13-10-2018 CLM_2935 305445576c5922413acf1b7ac18ccebf 585 Pfam PF03354 Phage Terminase 88 569 3.6E-66 T 13-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type CLM_2935 305445576c5922413acf1b7ac18ccebf 585 Gene3D G3DSA:3.40.50.300 38 263 2.8E-16 T 13-10-2018 CLM_3885 4e8867ce0de8634262a8cbb59f876a2d 323 SUPERFAMILY SSF100950 56 315 2.85E-71 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_3885 4e8867ce0de8634262a8cbb59f876a2d 323 Pfam PF13412 Winged helix-turn-helix DNA-binding 19 50 3.2E-6 T 13-10-2018 CLM_3885 4e8867ce0de8634262a8cbb59f876a2d 323 Gene3D G3DSA:3.40.50.1360 50 313 6.1E-87 T 13-10-2018 CLM_3885 4e8867ce0de8634262a8cbb59f876a2d 323 SUPERFAMILY SSF46785 15 52 2.58E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_3885 4e8867ce0de8634262a8cbb59f876a2d 323 Pfam PF04198 Putative sugar-binding domain 57 313 2.1E-76 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 CLM_3885 4e8867ce0de8634262a8cbb59f876a2d 323 Gene3D G3DSA:1.10.10.60 1 49 6.5E-23 T 13-10-2018 CLM_1795 abedef426325fc36ee5687d7746b415d 143 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 139 7.6E-33 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_1795 abedef426325fc36ee5687d7746b415d 143 PIRSF PIRSF006113 1 83 7.8E-16 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_1795 abedef426325fc36ee5687d7746b415d 143 PIRSF PIRSF006113 94 140 0.018 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_1795 abedef426325fc36ee5687d7746b415d 143 SUPERFAMILY SSF55620 1 138 9.45E-34 T 13-10-2018 CLM_1795 abedef426325fc36ee5687d7746b415d 143 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 116 1.7E-29 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CLM_1795 abedef426325fc36ee5687d7746b415d 143 Gene3D G3DSA:3.30.479.10 2 140 4.3E-30 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 CLM_0586 23ee85af67cef31c98bcafe8a275f3ac 372 Pfam PF12698 ABC-2 family transporter protein 19 361 1.1E-20 T 13-10-2018 CLM_1840 29722a50e72791f529f0c6b96dc36faf 151 Pfam PF09537 Domain of unknown function (DUF2383) 9 95 6.7E-8 T 13-10-2018 IPR019052 Domain of unknown function DUF2383 CLM_1840 29722a50e72791f529f0c6b96dc36faf 151 Gene3D G3DSA:1.20.1260.10 6 148 8.5E-33 T 13-10-2018 IPR012347 Ferritin-like CLM_2360 9b342a4a3fa93c195cc6a50f64635548 117 Pfam PF17032 zinc-ribbon family 21 77 5.3E-8 T 13-10-2018 IPR031493 Zinc-ribbon 15 CLM_0248 958b00b13d8aa8cae15b210866ae1033 138 SMART SM00116 10 57 6.9E-12 T 13-10-2018 IPR000644 CBS domain CLM_0248 958b00b13d8aa8cae15b210866ae1033 138 SMART SM00116 74 121 4.9E-10 T 13-10-2018 IPR000644 CBS domain CLM_0248 958b00b13d8aa8cae15b210866ae1033 138 Gene3D G3DSA:3.10.580.10 1 137 1.6E-41 T 13-10-2018 CLM_0248 958b00b13d8aa8cae15b210866ae1033 138 SUPERFAMILY SSF54631 1 116 2.65E-36 T 13-10-2018 CLM_0248 958b00b13d8aa8cae15b210866ae1033 138 Pfam PF00571 CBS domain 67 117 2.2E-14 T 13-10-2018 IPR000644 CBS domain CLM_0248 958b00b13d8aa8cae15b210866ae1033 138 Pfam PF00571 CBS domain 3 53 3.6E-15 T 13-10-2018 IPR000644 CBS domain CLM_3409 45d1d749f848dbd5de778ae98c75bfac 181 Gene3D G3DSA:1.10.530.10 26 181 4.3E-51 T 13-10-2018 CLM_3409 45d1d749f848dbd5de778ae98c75bfac 181 SUPERFAMILY SSF53955 30 180 7.82E-47 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CLM_3409 45d1d749f848dbd5de778ae98c75bfac 181 Pfam PF01464 Transglycosylase SLT domain 35 148 1.1E-31 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CLM_3735 48223c922389f576746bb2c8ac135a40 214 TIGRFAM TIGR01906 integ_TIGR01906: integral membrane protein TIGR01906 12 213 6.2E-48 T 13-10-2018 IPR010178 Integral membrane protein 1906 CLM_3735 48223c922389f576746bb2c8ac135a40 214 Pfam PF07314 Protein of unknown function (DUF1461) 12 186 8.8E-46 T 13-10-2018 IPR010178 Integral membrane protein 1906 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 SMART SM00283 56 314 1.8E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 80 109 3.2E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 183 212 3.2E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 154 181 3.2E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 Gene3D G3DSA:1.10.287.950 23 318 4.1E-55 T 13-10-2018 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 SUPERFAMILY SSF58104 40 308 1.01E-55 T 13-10-2018 CLM_1800 1b9916a0ed6d11c90e18abb9ad4cea1c 318 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 105 284 3.0E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2531 60cb645e74a02f2e4d02754ee3f5cce9 79 Gene3D G3DSA:3.10.450.40 15 77 1.4E-19 T 13-10-2018 CLM_2531 60cb645e74a02f2e4d02754ee3f5cce9 79 Pfam PF03413 Peptidase propeptide and YPEB domain 18 74 4.4E-16 T 13-10-2018 IPR025711 PepSY domain CLM_2994 25d5b78a6d57fbeaff8e624c9905fa45 653 Pfam PF01496 V-type ATPase 116kDa subunit family 194 432 3.3E-19 T 13-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_2994 25d5b78a6d57fbeaff8e624c9905fa45 653 Pfam PF01496 V-type ATPase 116kDa subunit family 555 642 1.5E-9 T 13-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 CLM_0707 76a71be47ba0a7cc5e5a1a687a70984d 151 Pfam PF04397 LytTr DNA-binding domain 53 144 4.9E-19 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_0707 76a71be47ba0a7cc5e5a1a687a70984d 151 Gene3D G3DSA:2.40.50.1020 37 142 2.0E-13 T 13-10-2018 CLM_0707 76a71be47ba0a7cc5e5a1a687a70984d 151 SMART SM00850 50 147 6.6E-25 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_2193 fb26459929fedcd2e943ba92e3740579 500 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 15 475 1.9E-159 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 CLM_2193 fb26459929fedcd2e943ba92e3740579 500 PIRSF PIRSF005690 1 490 3.1E-180 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 CLM_0130 207bc4bdd449886a61c610504932b598 402 Pfam PF12704 MacB-like periplasmic core domain 21 237 1.1E-32 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CLM_0130 207bc4bdd449886a61c610504932b598 402 Pfam PF02687 FtsX-like permease family 308 395 1.8E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1284 60534454380a138c9cf057fa8026614c 442 PIRSF PIRSF033563 1 442 2.2E-140 T 13-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 CLM_1284 60534454380a138c9cf057fa8026614c 442 Pfam PF06245 Protein of unknown function (DUF1015) 4 440 1.2E-135 T 13-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 CLM_2914 2b034e259d4011389788fa1f90cadfb3 195 Pfam PF11611 Domain of unknown function (DUF4352) 57 183 2.1E-10 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 CLM_2914 2b034e259d4011389788fa1f90cadfb3 195 Gene3D G3DSA:2.60.40.1240 49 193 9.7E-13 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLM_1384 d87846cb509277abd31da3d4a1c1e6a5 53 Pfam PF11007 Spore coat associated protein JA (CotJA) 16 49 4.4E-14 T 13-10-2018 IPR020256 Spore coat protein CotJA CLM_0803 e4cdc50fd67a15ce0b877301b3e8e1f9 329 Gene3D G3DSA:3.40.50.1980 183 329 6.8E-22 T 13-10-2018 CLM_0803 e4cdc50fd67a15ce0b877301b3e8e1f9 329 Pfam PF01497 Periplasmic binding protein 70 306 2.0E-29 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CLM_0803 e4cdc50fd67a15ce0b877301b3e8e1f9 329 Gene3D G3DSA:3.40.50.1980 37 182 1.3E-27 T 13-10-2018 CLM_0803 e4cdc50fd67a15ce0b877301b3e8e1f9 329 SUPERFAMILY SSF53807 51 323 1.06E-49 T 13-10-2018 CLM_1440 4c4aabffd7ad97ebf8c3ce1b70772282 159 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 34 110 1.5E-16 T 13-10-2018 IPR014229 Sporulation protein YtfJ CLM_1460 5f04089d3c24bb9bd3d2503f38104eb2 54 Pfam PF13451 Probable zinc-ribbon domain 3 48 3.8E-26 T 13-10-2018 IPR025306 Probable zinc-binding domain CLM_0440 b3b8ba4db238b88fefe693229a82fb17 192 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 1 191 25.143 T 13-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 CLM_0440 b3b8ba4db238b88fefe693229a82fb17 192 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 1 190 8.2E-81 T 13-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 CLM_0440 b3b8ba4db238b88fefe693229a82fb17 192 PIRSF PIRSF006102 1 192 6.0E-57 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CLM_0440 b3b8ba4db238b88fefe693229a82fb17 192 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 190 1.0E-61 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CLM_4144 3b3d60b8c97b50845feb40cc636975c0 254 Gene3D G3DSA:3.40.50.300 1 254 6.5E-79 T 13-10-2018 CLM_4144 3b3d60b8c97b50845feb40cc636975c0 254 PIRSF PIRSF009320 91 254 7.7E-8 T 13-10-2018 CLM_4144 3b3d60b8c97b50845feb40cc636975c0 254 PIRSF PIRSF009320 1 86 2.4E-12 T 13-10-2018 CLM_4144 3b3d60b8c97b50845feb40cc636975c0 254 SUPERFAMILY SSF52540 2 252 1.54E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_4144 3b3d60b8c97b50845feb40cc636975c0 254 Pfam PF13614 AAA domain 2 179 1.9E-68 T 13-10-2018 IPR025669 AAA domain CLM_2479 397b576fb624799bdc9f310abbd98e29 333 SUPERFAMILY SSF56235 91 312 4.24E-17 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CLM_2479 397b576fb624799bdc9f310abbd98e29 333 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 98 319 3.8E-36 T 13-10-2018 IPR005079 Peptidase C45 CLM_2479 397b576fb624799bdc9f310abbd98e29 333 Gene3D G3DSA:3.60.60.10 81 329 1.3E-42 T 13-10-2018 CLM_3910 024d2a1edc2cff3953c19ecb68697321 234 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 40 226 4.2E-49 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3910 024d2a1edc2cff3953c19ecb68697321 234 TIGRFAM TIGR02883 spore_cwlD: N-acetylmuramoyl-L-alanine amidase CwlD 38 229 2.7E-84 T 13-10-2018 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD MetaCyc: PWY-7883 CLM_3910 024d2a1edc2cff3953c19ecb68697321 234 Gene3D G3DSA:3.40.630.40 28 234 4.0E-56 T 13-10-2018 CLM_3910 024d2a1edc2cff3953c19ecb68697321 234 SMART SM00646 119 227 1.0E-17 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CLM_3910 024d2a1edc2cff3953c19ecb68697321 234 SUPERFAMILY SSF53187 38 231 1.95E-48 T 13-10-2018 CLM_2478 07c89bdb82e65a8daf2601f296e24919 49 Pfam PF12788 YmaF family 2 41 1.3E-14 T 13-10-2018 IPR024307 YmaF CLM_2712 d4616029f34086932cb49728049bb39e 105 Gene3D G3DSA:3.30.1330.30 2 101 2.3E-27 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_2712 d4616029f34086932cb49728049bb39e 105 SUPERFAMILY SSF55315 4 100 1.02E-21 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CLM_2712 d4616029f34086932cb49728049bb39e 105 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 8 95 4.9E-15 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 Gene3D G3DSA:3.90.1200.10 117 403 1.6E-103 T 13-10-2018 CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 Pfam PF01636 Phosphotransferase enzyme family 32 266 1.8E-11 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 SUPERFAMILY SSF56112 3 399 1.71E-89 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 33 402 1.5E-124 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 PIRSF PIRSF031134 1 403 1.5E-145 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 403 175.213 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 CLM_1426 9d42f43d45fe3f2048da94ef1dd056c4 403 Gene3D G3DSA:3.30.200.20 1 115 1.2E-40 T 13-10-2018 CLM_2829 28e8727b3d34afc97526cfb4b53ef04c 307 SUPERFAMILY SSF161098 40 297 4.49E-35 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2829 28e8727b3d34afc97526cfb4b53ef04c 307 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 26 305 5.9E-88 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 CLM_2829 28e8727b3d34afc97526cfb4b53ef04c 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 305 1.6E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_2829 28e8727b3d34afc97526cfb4b53ef04c 307 Gene3D G3DSA:1.10.3720.10 83 306 4.2E-34 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3471 5b106d6c4e097cd25670dfaae42df2aa 122 TIGRFAM TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family 10 122 1.3E-29 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane CLM_3471 5b106d6c4e097cd25670dfaae42df2aa 122 Pfam PF12670 Protein of unknown function (DUF3792) 9 119 1.7E-24 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane CLM_1756 909a5767bf91094c2a7a359e92ac42b9 162 SUPERFAMILY SSF48695 29 152 1.88E-8 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CLM_1756 909a5767bf91094c2a7a359e92ac42b9 162 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 32 146 3.4E-23 T 13-10-2018 IPR010181 CGCAxxGCC motif CLM_1756 909a5767bf91094c2a7a359e92ac42b9 162 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 32 151 7.2E-28 T 13-10-2018 IPR010181 CGCAxxGCC motif CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 Pfam PF13181 Tetratricopeptide repeat 147 176 0.14 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 Pfam PF13181 Tetratricopeptide repeat 180 209 1.9E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 SUPERFAMILY SSF48452 79 210 3.07E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 Gene3D G3DSA:1.25.40.10 9 222 9.3E-27 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 SMART SM00028 77 110 89.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 SMART SM00028 145 178 0.02 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 SMART SM00028 111 144 1.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3907 68e81ceb5afdd5e15ccd5679482f6a20 235 SMART SM00028 179 211 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_0389 b32dcd1981186e4a8c21f9fc3c99ee56 248 SMART SM00382 31 218 1.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0389 b32dcd1981186e4a8c21f9fc3c99ee56 248 SUPERFAMILY SSF52540 3 225 4.72E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0389 b32dcd1981186e4a8c21f9fc3c99ee56 248 Pfam PF00005 ABC transporter 22 170 3.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0389 b32dcd1981186e4a8c21f9fc3c99ee56 248 Gene3D G3DSA:3.40.50.300 1 240 6.9E-65 T 13-10-2018 CLM_0743 b73a9eeaabd0634cc89f4f4239f48231 137 Pfam PF04304 Protein of unknown function (DUF454) 21 136 1.5E-36 T 13-10-2018 IPR007401 Protein of unknown function DUF454 CLM_0743 b73a9eeaabd0634cc89f4f4239f48231 137 PIRSF PIRSF016789 20 137 6.2E-31 T 13-10-2018 IPR007401 Protein of unknown function DUF454 CLM_0232 bbb148ae04c6321ce93bb39c511772ea 284 Pfam PF09986 Uncharacterized protein conserved in bacteria (DUF2225) 31 242 1.1E-79 T 13-10-2018 IPR018708 Protein of unknown function DUF2225 CLM_0232 bbb148ae04c6321ce93bb39c511772ea 284 Gene3D G3DSA:1.25.40.10 105 250 4.3E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 Gene3D G3DSA:3.90.1150.10 14 384 1.8E-139 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 Pfam PF00155 Aminotransferase class I and II 31 385 1.4E-53 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 Gene3D G3DSA:3.40.640.10 44 281 1.8E-139 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 160 184 1.0E-11 T 13-10-2018 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 226 250 1.0E-11 T 13-10-2018 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 90 110 1.0E-11 T 13-10-2018 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 112 133 1.0E-11 T 13-10-2018 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CLM_1961 e8c0534670518cdfcebd93c61ce8ad38 396 SUPERFAMILY SSF53383 1 392 4.21E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_0962 8a2d5f5a42a49394ef8aa99bfb7c9233 520 SMART SM01208 382 459 1.4E-17 T 13-10-2018 IPR011098 G5 domain CLM_0962 8a2d5f5a42a49394ef8aa99bfb7c9233 520 Pfam PF04294 VanW like protein 245 374 1.1E-51 T 13-10-2018 IPR007391 Vancomycin resistance VanW CLM_0962 8a2d5f5a42a49394ef8aa99bfb7c9233 520 Gene3D G3DSA:2.20.230.10 388 458 2.5E-10 T 13-10-2018 CLM_0962 8a2d5f5a42a49394ef8aa99bfb7c9233 520 Pfam PF12229 Putative peptidoglycan binding domain 94 206 1.0E-19 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain CLM_0962 8a2d5f5a42a49394ef8aa99bfb7c9233 520 Pfam PF07501 G5 domain 391 458 1.9E-12 T 13-10-2018 IPR011098 G5 domain CLM_4011 5d974b11efd63157919c5d970abc63c2 181 SUPERFAMILY SSF53271 4 181 1.88E-59 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_4011 5d974b11efd63157919c5d970abc63c2 181 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 11 175 1.5E-68 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 CLM_4011 5d974b11efd63157919c5d970abc63c2 181 Pfam PF00156 Phosphoribosyl transferase domain 17 162 5.6E-27 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CLM_4011 5d974b11efd63157919c5d970abc63c2 181 Gene3D G3DSA:3.40.50.2020 3 181 1.1E-68 T 13-10-2018 CLM_3930 32d5b9ba045d88bc024006e3773db5eb 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 1.6E-24 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3930 32d5b9ba045d88bc024006e3773db5eb 59 PIRSF PIRSF002211 1 59 6.4E-27 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3930 32d5b9ba045d88bc024006e3773db5eb 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.341 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3930 32d5b9ba045d88bc024006e3773db5eb 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 53 1.6E-18 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CLM_3930 32d5b9ba045d88bc024006e3773db5eb 59 Gene3D G3DSA:3.30.1390.20 1 59 9.9E-25 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CLM_3930 32d5b9ba045d88bc024006e3773db5eb 59 SUPERFAMILY SSF55129 4 58 1.44E-19 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CLM_3075 b7e8191674cc88e04c51c7246609ac73 238 SUPERFAMILY SSF53335 6 197 5.55E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3075 b7e8191674cc88e04c51c7246609ac73 238 Gene3D G3DSA:3.40.50.150 54 226 7.6E-7 T 13-10-2018 CLM_0428 719d8cd2496076eeb316a5b81eada5df 188 SUPERFAMILY SSF109604 12 176 6.28E-17 T 13-10-2018 CLM_0428 719d8cd2496076eeb316a5b81eada5df 188 Pfam PF01966 HD domain 21 106 1.2E-6 T 13-10-2018 IPR006674 HD domain CLM_0428 719d8cd2496076eeb316a5b81eada5df 188 Gene3D G3DSA:1.10.3210.10 1 162 1.3E-13 T 13-10-2018 CLM_1853 83de2d1af4a552ec25a4879dea891394 700 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 600 685 1.1E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1853 83de2d1af4a552ec25a4879dea891394 700 SMART SM00387 593 700 1.2E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CLM_1853 83de2d1af4a552ec25a4879dea891394 700 SUPERFAMILY SSF47384 469 547 3.92E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CLM_1853 83de2d1af4a552ec25a4879dea891394 700 Gene3D G3DSA:3.30.565.10 553 697 3.2E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1853 83de2d1af4a552ec25a4879dea891394 700 Pfam PF00512 His Kinase A (phospho-acceptor) domain 482 547 1.0E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1853 83de2d1af4a552ec25a4879dea891394 700 SMART SM00388 481 547 3.7E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CLM_1853 83de2d1af4a552ec25a4879dea891394 700 SUPERFAMILY SSF55874 550 685 3.16E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1853 83de2d1af4a552ec25a4879dea891394 700 Gene3D G3DSA:1.10.287.130 472 552 1.8E-19 T 13-10-2018 CLM_1853 83de2d1af4a552ec25a4879dea891394 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 648 658 4.5E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1853 83de2d1af4a552ec25a4879dea891394 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 663 681 4.5E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CLM_1040 41a997b8662bf0908a570a8e58d2873f 125 Gene3D G3DSA:2.40.440.10 8 125 8.5E-46 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_1040 41a997b8662bf0908a570a8e58d2873f 125 SUPERFAMILY SSF141523 16 124 1.83E-37 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_1040 41a997b8662bf0908a570a8e58d2873f 125 Pfam PF03734 L,D-transpeptidase catalytic domain 16 124 4.1E-22 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CLM_3589 32ebaec165bede71e1ea8223be2762d5 167 Gene3D G3DSA:1.10.1760.20 2 162 7.4E-8 T 13-10-2018 CLM_3589 32ebaec165bede71e1ea8223be2762d5 167 PIRSF PIRSF031501 1 165 3.3E-49 T 13-10-2018 IPR010387 Queuosine precursor transporter QueT GO:0005886 CLM_3589 32ebaec165bede71e1ea8223be2762d5 167 Pfam PF06177 QueT transporter 11 157 6.5E-48 T 13-10-2018 IPR010387 Queuosine precursor transporter QueT GO:0005886 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Pfam PF13181 Tetratricopeptide repeat 214 235 0.0033 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Pfam PF13181 Tetratricopeptide repeat 111 143 3.2E-7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Pfam PF13181 Tetratricopeptide repeat 248 277 2.4E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 76 109 5.6E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 212 245 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 42 75 4.6E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 110 143 3.4E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 178 211 0.33 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 144 177 46.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SMART SM00028 246 279 4.8E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Gene3D G3DSA:1.25.40.10 4 180 1.4E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Pfam PF13432 Tetratricopeptide repeat 46 103 3.4E-8 T 13-10-2018 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Pfam PF13431 Tetratricopeptide repeat 167 198 3.1E-5 T 13-10-2018 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 SUPERFAMILY SSF48452 5 280 1.29E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1294 69f7e0c77c4492a0cb36d7bd5d8b3b7b 303 Gene3D G3DSA:1.25.40.10 181 300 4.6E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 SUPERFAMILY SSF90123 10 320 1.7E-55 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 Gene3D G3DSA:3.40.50.300 328 577 6.8E-85 T 13-10-2018 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 Pfam PF00005 ABC transporter 353 500 1.4E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 Gene3D G3DSA:1.20.1560.10 1 324 9.4E-54 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 SUPERFAMILY SSF52540 330 569 3.28E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 Pfam PF00664 ABC transporter transmembrane region 22 292 5.1E-26 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CLM_1842 5923ae71f4d3641d4e0f8feb1b28391e 584 SMART SM00382 361 552 3.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1676 4a9250baa95e52777e1cc9c44eaeffa5 176 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 6 144 1.6E-6 T 13-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 CLM_2354 b05b8ef32721126284152bace469bf19 163 Pfam PF11188 Protein of unknown function (DUF2975) 37 162 6.3E-24 T 13-10-2018 IPR021354 Protein of unknown function DUF2975 CLM_0243 a720fec13983aa6587a87714137ccdc8 94 Pfam PF14276 Domain of unknown function (DUF4363) 2 93 7.4E-27 T 13-10-2018 IPR025373 Protein of unknown function DUF4363 CLM_1709 e3f34cc16720b8950da9d79ce92ffd4b 266 Pfam PF00793 DAHP synthetase I family 16 265 1.0E-75 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CLM_1709 e3f34cc16720b8950da9d79ce92ffd4b 266 SUPERFAMILY SSF51569 5 265 6.04E-97 T 13-10-2018 CLM_1709 e3f34cc16720b8950da9d79ce92ffd4b 266 Gene3D G3DSA:3.20.20.70 2 263 5.7E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1709 e3f34cc16720b8950da9d79ce92ffd4b 266 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 9 261 1.3E-112 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CLM_1354 60d1ad13993bbbe4cdb17498ecc2e0c1 313 Gene3D G3DSA:3.30.420.40 2 104 1.9E-26 T 13-10-2018 CLM_1354 60d1ad13993bbbe4cdb17498ecc2e0c1 313 Gene3D G3DSA:3.30.420.40 105 300 1.2E-36 T 13-10-2018 CLM_1354 60d1ad13993bbbe4cdb17498ecc2e0c1 313 Pfam PF00480 ROK family 6 293 1.8E-39 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CLM_1354 60d1ad13993bbbe4cdb17498ecc2e0c1 313 SUPERFAMILY SSF53067 5 295 3.01E-46 T 13-10-2018 CLM_3958 a1fe669266555879e0f1a366143ebf5d 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 27.293 T 13-10-2018 IPR022973 Ribosomal protein L10 CLM_3958 a1fe669266555879e0f1a366143ebf5d 166 SUPERFAMILY SSF160369 4 160 7.98E-54 T 13-10-2018 CLM_3958 a1fe669266555879e0f1a366143ebf5d 166 Pfam PF00466 Ribosomal protein L10 3 101 4.1E-27 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 CLM_3958 a1fe669266555879e0f1a366143ebf5d 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 19 141 9.0E-8 T 13-10-2018 CLM_3958 a1fe669266555879e0f1a366143ebf5d 166 Gene3D G3DSA:3.30.70.1730 3 133 1.7E-41 T 13-10-2018 CLM_2633 0f58e5d87f4a6e0cfa77713041f99050 84 Pfam PF10779 Haemolysin XhlA 13 78 5.2E-23 T 13-10-2018 IPR019715 Haemolysin XhlA CLM_1888 b277750d9e7b1c20f050b0068b9a9c79 233 Gene3D G3DSA:2.160.20.100 4 127 4.2E-19 T 13-10-2018 CLM_1888 b277750d9e7b1c20f050b0068b9a9c79 233 SUPERFAMILY SSF141571 24 120 9.42E-20 T 13-10-2018 CLM_1888 b277750d9e7b1c20f050b0068b9a9c79 233 Pfam PF13599 Pentapeptide repeats (9 copies) 48 120 3.5E-8 T 13-10-2018 IPR001646 Pentapeptide repeat CLM_0713 7144476115212dfed46e792b47a9479f 364 Pfam PF07532 Bacterial Ig-like domain (group 4) 136 185 9.0E-11 T 13-10-2018 IPR011081 Bacterial Ig-related CLM_0713 7144476115212dfed46e792b47a9479f 364 Gene3D G3DSA:1.25.40.10 25 121 4.6E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_0713 7144476115212dfed46e792b47a9479f 364 SUPERFAMILY SSF48452 51 116 8.93E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3509 51fcc33adca474ac695004a1181c6ebd 472 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 68 433 1.6E-11 T 13-10-2018 CLM_3500 cd9e87b5c38b3f27e38c04b07daea74c 474 Pfam PF01943 Polysaccharide biosynthesis protein 15 275 1.8E-19 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CLM_3500 cd9e87b5c38b3f27e38c04b07daea74c 474 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 353 428 1.3E-9 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 5 151 40.902 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 121 127 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 72 151 4.0E-32 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 SUPERFAMILY SSF46767 70 151 2.49E-31 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 Gene3D G3DSA:3.30.160.70 1 67 1.3E-11 T 13-10-2018 CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 71 150 7.6E-35 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 Gene3D G3DSA:1.10.10.10 70 155 7.9E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1766 473ad16e1c590b2b9dd091119d351e64 156 SUPERFAMILY SSF53155 5 76 6.67E-14 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CLM_3600 fc5733d8edd856ee0bf1296a4763d426 578 Pfam PF13519 von Willebrand factor type A domain 405 508 1.3E-9 T 13-10-2018 IPR002035 von Willebrand factor, type A CLM_3600 fc5733d8edd856ee0bf1296a4763d426 578 Gene3D G3DSA:3.40.50.410 405 571 1.0E-11 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CLM_3600 fc5733d8edd856ee0bf1296a4763d426 578 SUPERFAMILY SSF53300 405 567 4.61E-14 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CLM_3600 fc5733d8edd856ee0bf1296a4763d426 578 SMART SM00327 402 575 9.9E-10 T 13-10-2018 IPR002035 von Willebrand factor, type A CLM_1543 9b01c2492f6594bb3154e8ceb49d84ef 253 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 246 7.7E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1543 9b01c2492f6594bb3154e8ceb49d84ef 253 SUPERFAMILY SSF161098 60 246 3.4E-22 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1543 9b01c2492f6594bb3154e8ceb49d84ef 253 Gene3D G3DSA:1.10.3720.10 54 250 4.6E-20 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0264 373c4affb26edfd6129cef4fd78095cb 386 Pfam PF12229 Putative peptidoglycan binding domain 102 216 1.5E-19 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain CLM_0264 373c4affb26edfd6129cef4fd78095cb 386 Pfam PF04294 VanW like protein 255 384 1.1E-49 T 13-10-2018 IPR007391 Vancomycin resistance VanW CLM_1429 3d0c6100de6d3d45dce3364f1589381a 215 SUPERFAMILY SSF53639 4 210 6.28E-53 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CLM_1429 3d0c6100de6d3d45dce3364f1589381a 215 SMART SM01007 9 186 1.5E-56 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CLM_1429 3d0c6100de6d3d45dce3364f1589381a 215 Gene3D G3DSA:3.40.225.10 2 213 1.5E-62 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CLM_1429 3d0c6100de6d3d45dce3364f1589381a 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 184 1.2E-43 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CLM_2734 9280a120a1b156a92ea468cb635fb024 269 Hamap MF_00052_B Ribonuclease HII [rnhB]. 84 267 33.949 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 CLM_2734 9280a120a1b156a92ea468cb635fb024 269 SUPERFAMILY SSF53098 74 265 1.47E-59 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_2734 9280a120a1b156a92ea468cb635fb024 269 Gene3D G3DSA:3.30.420.10 61 269 2.7E-69 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_2734 9280a120a1b156a92ea468cb635fb024 269 Pfam PF01351 Ribonuclease HII 86 266 2.7E-38 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain CLM_1944 7155d642698210f7b20ec07c0acb6ce5 153 SUPERFAMILY SSF103039 1 150 6.54E-27 T 13-10-2018 IPR028976 CheC-like superfamily CLM_1944 7155d642698210f7b20ec07c0acb6ce5 153 Gene3D G3DSA:3.40.1550.10 1 152 2.0E-37 T 13-10-2018 IPR028976 CheC-like superfamily CLM_1944 7155d642698210f7b20ec07c0acb6ce5 153 Pfam PF13690 Chemotaxis phosphatase CheX 45 130 2.4E-12 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain CLM_3141 a461adeb557ad683d4833226c369fbf4 116 SUPERFAMILY SSF54913 4 112 1.4E-5 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 Gene3D G3DSA:4.10.910.10 73 123 2.6E-24 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 PIRSF PIRSF002134 1 123 1.4E-43 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 Gene3D G3DSA:1.10.8.50 1 72 2.1E-31 T 13-10-2018 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 Pfam PF00416 Ribosomal protein S13/S18 3 109 9.1E-32 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 4.3E-54 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 27.137 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CLM_3922 39c69c6a7a7bd7335e8f4455b4b7d351 123 SUPERFAMILY SSF46946 2 121 1.96E-45 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CLM_2621 9703cada1ae2ae85f595df5695c09669 228 Pfam PF01957 NfeD-like C-terminal, partner-binding 125 212 1.6E-5 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain CLM_2611 1639f6f2622af23400f49219257a0609 119 SUPERFAMILY SSF82771 19 116 1.06E-9 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_2611 1639f6f2622af23400f49219257a0609 119 Gene3D G3DSA:3.40.1440.10 18 118 2.7E-16 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_1262 691d74ca9b810c3c77025b4f06680ca6 181 SUPERFAMILY SSF48452 41 178 6.96E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1262 691d74ca9b810c3c77025b4f06680ca6 181 Pfam PF13181 Tetratricopeptide repeat 40 68 4.1E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1262 691d74ca9b810c3c77025b4f06680ca6 181 Gene3D G3DSA:1.25.40.10 32 177 9.6E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_2199 101ef817351b32a1ee8f843f2866ebb2 326 Pfam PF12345 Protein of unknown function (DUF3641) 192 324 8.6E-55 T 13-10-2018 IPR024521 Domain of unknown function DUF3641 CLM_2199 101ef817351b32a1ee8f843f2866ebb2 326 TIGRFAM TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein 29 324 3.4E-136 T 13-10-2018 IPR026351 Radical SAM/Cys-rich domain protein CLM_2199 101ef817351b32a1ee8f843f2866ebb2 326 Pfam PF04055 Radical SAM superfamily 37 175 4.6E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2199 101ef817351b32a1ee8f843f2866ebb2 326 SUPERFAMILY SSF102114 32 322 2.75E-40 T 13-10-2018 CLM_2199 101ef817351b32a1ee8f843f2866ebb2 326 Gene3D G3DSA:3.20.20.70 27 295 6.0E-25 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_2199 101ef817351b32a1ee8f843f2866ebb2 326 Pfam PF13353 4Fe-4S single cluster domain 43 135 5.1E-5 T 13-10-2018 CLM_3507 78725be306feac56db268e80da6536b4 364 SUPERFAMILY SSF53756 12 361 4.71E-76 T 13-10-2018 CLM_3507 78725be306feac56db268e80da6536b4 364 Pfam PF00534 Glycosyl transferases group 1 174 336 1.2E-42 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CLM_3507 78725be306feac56db268e80da6536b4 364 Gene3D G3DSA:3.40.50.2000 162 342 1.6E-78 T 13-10-2018 CLM_3507 78725be306feac56db268e80da6536b4 364 Pfam PF13477 Glycosyl transferase 4-like 2 140 6.2E-43 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CLM_3507 78725be306feac56db268e80da6536b4 364 Gene3D G3DSA:3.40.50.2000 21 355 1.6E-78 T 13-10-2018 CLM_3060 acb15489bb075051e4c9080dcf892252 272 Gene3D G3DSA:1.20.1330.10 42 169 6.2E-48 T 13-10-2018 CLM_3060 acb15489bb075051e4c9080dcf892252 272 Gene3D G3DSA:1.20.1330.10 176 227 1.1E-11 T 13-10-2018 CLM_3060 acb15489bb075051e4c9080dcf892252 272 SUPERFAMILY SSF64518 4 261 1.96E-56 T 13-10-2018 CLM_3060 acb15489bb075051e4c9080dcf892252 272 Gene3D G3DSA:1.20.58.1830 233 254 1.1E-11 T 13-10-2018 CLM_3060 acb15489bb075051e4c9080dcf892252 272 Gene3D G3DSA:1.20.58.1830 11 30 6.2E-48 T 13-10-2018 CLM_3060 acb15489bb075051e4c9080dcf892252 272 Pfam PF00700 Bacterial flagellin C-terminal helical region 183 262 2.5E-7 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3060 acb15489bb075051e4c9080dcf892252 272 Pfam PF00669 Bacterial flagellin N-terminal helical region 14 137 8.8E-33 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CLM_3060 acb15489bb075051e4c9080dcf892252 272 PRINTS PR00207 Flagellin signature 73 92 5.0E-16 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3060 acb15489bb075051e4c9080dcf892252 272 PRINTS PR00207 Flagellin signature 108 131 5.0E-16 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_3060 acb15489bb075051e4c9080dcf892252 272 PRINTS PR00207 Flagellin signature 34 51 5.0E-16 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CLM_2105 2be659d3ba949bfb3213180d886c2669 174 Pfam PF12685 SpoIIIAH-like protein 45 170 1.2E-29 T 13-10-2018 IPR024232 Stage III sporulation protein AH-like CLM_2105 2be659d3ba949bfb3213180d886c2669 174 Gene3D G3DSA:3.30.300.270 61 174 9.0E-23 T 13-10-2018 IPR038503 Stage III sporulation protein AH-like superfamily CLM_1190 1d364346d92ac160a0439a4c5b3506bc 75 TIGRFAM TIGR03090 SASP_tlp: small, acid-soluble spore protein tlp 3 70 9.2E-29 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like CLM_1190 1d364346d92ac160a0439a4c5b3506bc 75 Hamap MF_01506 Small, acid-soluble spore protein Tlp [tlp]. 1 75 29.181 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like CLM_1500 4024a3afa8a695543c18720da3ad0ffc 195 Gene3D G3DSA:1.20.1260.10 1 150 2.0E-55 T 13-10-2018 IPR012347 Ferritin-like CLM_1500 4024a3afa8a695543c18720da3ad0ffc 195 SUPERFAMILY SSF57802 152 194 2.9E-11 T 13-10-2018 CLM_1500 4024a3afa8a695543c18720da3ad0ffc 195 SUPERFAMILY SSF47240 5 151 1.65E-39 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_1500 4024a3afa8a695543c18720da3ad0ffc 195 Gene3D G3DSA:2.20.28.10 151 195 3.4E-19 T 13-10-2018 CLM_1500 4024a3afa8a695543c18720da3ad0ffc 195 Pfam PF02915 Rubrerythrin 11 143 4.0E-28 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 CLM_2864 7978a5b4d3fd9f5171678d5e51f9837b 343 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 8 342 30.2 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CLM_2864 7978a5b4d3fd9f5171678d5e51f9837b 343 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 4 339 1.4E-75 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CLM_2864 7978a5b4d3fd9f5171678d5e51f9837b 343 Pfam PF02618 YceG-like family 47 337 3.5E-76 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CLM_2864 7978a5b4d3fd9f5171678d5e51f9837b 343 Gene3D G3DSA:1.10.8.1150 114 198 6.7E-6 T 13-10-2018 CLM_2864 7978a5b4d3fd9f5171678d5e51f9837b 343 Gene3D G3DSA:1.10.8.1150 42 113 2.3E-5 T 13-10-2018 CLM_1295 273b63cb53c85f5c226343a87b9aa677 190 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 190 39.723 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CLM_1295 273b63cb53c85f5c226343a87b9aa677 190 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 1 188 8.1E-68 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CLM_1295 273b63cb53c85f5c226343a87b9aa677 190 Gene3D G3DSA:3.40.50.2020 3 189 1.8E-48 T 13-10-2018 CLM_1295 273b63cb53c85f5c226343a87b9aa677 190 SUPERFAMILY SSF53271 1 189 8.43E-41 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_3626 fa869794c430e9153024c2e05cbad3be 232 ProSitePatterns PS01087 Radical activating enzymes signature. 15 36 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CLM_3626 fa869794c430e9153024c2e05cbad3be 232 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 3 230 1.6E-91 T 13-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 CLM_3626 fa869794c430e9153024c2e05cbad3be 232 Pfam PF04055 Radical SAM superfamily 21 173 4.3E-25 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3626 fa869794c430e9153024c2e05cbad3be 232 Gene3D G3DSA:3.20.20.70 1 232 3.3E-88 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3626 fa869794c430e9153024c2e05cbad3be 232 Pfam PF13353 4Fe-4S single cluster domain 13 130 2.4E-22 T 13-10-2018 CLM_3626 fa869794c430e9153024c2e05cbad3be 232 SUPERFAMILY SSF102114 21 207 1.8E-25 T 13-10-2018 CLM_3401 3aaddc951bd1bb6c368da3106dab2e5f 85 Pfam PF14209 Domain of unknown function (DUF4321) 36 83 1.8E-17 T 13-10-2018 IPR025470 Protein of unknown function DUF4321 CLM_1037 dff24b59dc2e67ed4d295e5e73883382 158 TIGRFAM TIGR02271 TIGR02271: conserved domain 32 145 3.8E-44 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_1037 dff24b59dc2e67ed4d295e5e73883382 158 Pfam PF09557 Domain of unknown function (DUF2382) 32 140 6.3E-29 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_2357 0c15a76a1d94769c0c1ec704b9516bd7 379 PIRSF PIRSF001455 32 379 3.8E-94 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CLM_2357 0c15a76a1d94769c0c1ec704b9516bd7 379 Pfam PF01761 3-dehydroquinate synthase 82 339 2.2E-71 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CLM_2357 0c15a76a1d94769c0c1ec704b9516bd7 379 SUPERFAMILY SSF56796 27 359 1.07E-75 T 13-10-2018 CLM_2357 0c15a76a1d94769c0c1ec704b9516bd7 379 Gene3D G3DSA:1.20.1090.10 189 379 8.9E-51 T 13-10-2018 CLM_2357 0c15a76a1d94769c0c1ec704b9516bd7 379 Gene3D G3DSA:3.40.50.1970 18 186 7.8E-45 T 13-10-2018 CLM_0892 16e6c78191f46e7c79db832c3824be14 750 Pfam PF06597 Clostridium P-47 protein 173 571 4.2E-38 T 13-10-2018 IPR010567 Clostridium P47 protein CLM_1801 4f9f6fb6c2d80e8ab18b00fb1d1da83d 171 Pfam PF06161 Protein of unknown function (DUF975) 61 150 1.4E-27 T 13-10-2018 IPR010380 Protein of unknown function DUF975 CLM_3667 d9a606a5061d877c890af51b290279ce 366 Gene3D G3DSA:3.40.190.10 39 144 1.6E-12 T 13-10-2018 CLM_3667 d9a606a5061d877c890af51b290279ce 366 Gene3D G3DSA:3.40.190.10 145 333 1.1E-28 T 13-10-2018 CLM_3667 d9a606a5061d877c890af51b290279ce 366 SUPERFAMILY SSF53850 38 262 4.41E-36 T 13-10-2018 CLM_3667 d9a606a5061d877c890af51b290279ce 366 Pfam PF13379 NMT1-like family 36 265 1.1E-24 T 13-10-2018 CLM_2674 b5478b6351fb46b051c734bac9d57745 206 Pfam PF10991 Protein of unknown function (DUF2815) 32 198 4.1E-73 T 13-10-2018 IPR022595 Protein of unknown function DUF2815 CLM_2674 b5478b6351fb46b051c734bac9d57745 206 SUPERFAMILY SSF50249 30 196 2.57E-48 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_2674 b5478b6351fb46b051c734bac9d57745 206 Gene3D G3DSA:2.40.50.140 17 203 1.5E-70 T 13-10-2018 CLM_3135 d616f60cc12825fe9e36b087a411144a 183 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 3 175 1.1E-59 T 13-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 CLM_3135 d616f60cc12825fe9e36b087a411144a 183 Pfam PF01965 DJ-1/PfpI family 3 164 4.2E-50 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CLM_3135 d616f60cc12825fe9e36b087a411144a 183 Gene3D G3DSA:3.40.50.880 1 182 4.5E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_3135 d616f60cc12825fe9e36b087a411144a 183 SUPERFAMILY SSF52317 1 173 4.59E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0923 c73d715cb4f66c47aae5f01fe18ef8e3 154 Pfam PF06695 Putative small multi-drug export protein 17 142 2.2E-43 T 13-10-2018 IPR009577 Putative small multi-drug export CLM_0019 6d82bee6ed3fc21dd4ff4292a66801d4 258 Pfam PF03734 L,D-transpeptidase catalytic domain 135 256 2.7E-19 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CLM_0019 6d82bee6ed3fc21dd4ff4292a66801d4 258 SUPERFAMILY SSF141523 133 256 1.07E-24 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_0019 6d82bee6ed3fc21dd4ff4292a66801d4 258 Gene3D G3DSA:2.40.440.10 128 257 1.7E-27 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CLM_0160 a332ffd78f98108c53143e083656fe7b 520 SMART SM00257 471 515 1.4E-17 T 13-10-2018 IPR018392 LysM domain CLM_0160 a332ffd78f98108c53143e083656fe7b 520 Pfam PF12673 Domain of unknown function (DUF3794) 190 267 1.5E-9 T 13-10-2018 IPR024300 Domain of unknown function DUF3794 CLM_0160 a332ffd78f98108c53143e083656fe7b 520 Pfam PF12673 Domain of unknown function (DUF3794) 37 119 7.0E-13 T 13-10-2018 IPR024300 Domain of unknown function DUF3794 CLM_0160 a332ffd78f98108c53143e083656fe7b 520 Pfam PF12673 Domain of unknown function (DUF3794) 346 426 2.3E-18 T 13-10-2018 IPR024300 Domain of unknown function DUF3794 CLM_0160 a332ffd78f98108c53143e083656fe7b 520 Pfam PF01476 LysM domain 472 515 9.4E-17 T 13-10-2018 IPR018392 LysM domain CLM_0160 a332ffd78f98108c53143e083656fe7b 520 SUPERFAMILY SSF54106 470 515 7.98E-13 T 13-10-2018 CLM_0160 a332ffd78f98108c53143e083656fe7b 520 Gene3D G3DSA:3.10.350.10 465 519 5.1E-20 T 13-10-2018 IPR036779 LysM domain superfamily CLM_3180 18b8f6c327e87f8cae405fe59144989f 283 SUPERFAMILY SSF55166 162 246 2.3E-17 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CLM_3180 18b8f6c327e87f8cae405fe59144989f 283 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 173 239 1.2E-17 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 CLM_3180 18b8f6c327e87f8cae405fe59144989f 283 Gene3D G3DSA:3.30.1380.10 109 238 5.1E-13 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CLM_2108 886841e2395050d231b4704e759174b7 387 TIGRFAM TIGR02829 spore_III_AE: stage III sporulation protein AE 1 381 1.5E-148 T 13-10-2018 IPR014194 Sporulation stage III, protein AE CLM_2108 886841e2395050d231b4704e759174b7 387 Pfam PF09546 Stage III sporulation protein AE (spore_III_AE) 60 381 5.6E-114 T 13-10-2018 IPR014194 Sporulation stage III, protein AE CLM_3132 ec201606a23316158c3b1cd71a314b87 467 Gene3D G3DSA:2.120.10.30 151 313 1.2E-23 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_3132 ec201606a23316158c3b1cd71a314b87 467 Gene3D G3DSA:3.40.30.10 4 150 2.2E-34 T 13-10-2018 CLM_3132 ec201606a23316158c3b1cd71a314b87 467 SUPERFAMILY SSF52833 14 148 1.76E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_3132 ec201606a23316158c3b1cd71a314b87 467 SUPERFAMILY SSF101898 176 465 1.33E-30 T 13-10-2018 CLM_3132 ec201606a23316158c3b1cd71a314b87 467 Gene3D G3DSA:2.120.10.30 341 467 1.9E-11 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CLM_3132 ec201606a23316158c3b1cd71a314b87 467 Pfam PF13905 Thioredoxin-like 37 129 5.8E-14 T 13-10-2018 IPR012336 Thioredoxin-like fold CLM_3039 748900d477e289208a07455db8a5d1fa 296 Pfam PF06081 Aromatic acid exporter family member 1 3 144 9.9E-27 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 CLM_1736 bd20af3b186054cbef7fd556d88d4afd 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 3.5E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1736 bd20af3b186054cbef7fd556d88d4afd 218 SUPERFAMILY SSF161098 11 203 1.19E-43 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1736 bd20af3b186054cbef7fd556d88d4afd 218 Gene3D G3DSA:1.10.3720.10 5 218 7.5E-50 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2689 9d71d23dba6e6c504f16adb7abe22035 73 Pfam PF04070 Domain of unknown function (DUF378) 6 63 1.8E-19 T 13-10-2018 IPR007211 Protein of unknown function DUF378 CLM_2342 7ffa68a44ac1abd53bdd9f9696e68fbc 120 Pfam PF13788 Domain of unknown function (DUF4180) 9 116 1.5E-33 T 13-10-2018 IPR025438 Domain of unknown function DUF4180 CLM_1733 c58400c7eeb41200cfe09cd2e03f8ecb 340 Gene3D G3DSA:3.20.20.210 1 336 1.0E-75 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1733 c58400c7eeb41200cfe09cd2e03f8ecb 340 TIGRFAM TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family 2 336 6.0E-75 T 13-10-2018 IPR006360 Methyltransferase MtaA/CmuA GO:0006730|GO:0008168 CLM_1733 c58400c7eeb41200cfe09cd2e03f8ecb 340 SUPERFAMILY SSF51726 1 338 3.66E-65 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1733 c58400c7eeb41200cfe09cd2e03f8ecb 340 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 336 2.4E-79 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CLM_1772 f52565ca1a2b4b5f626d1d137efa3bcd 124 SUPERFAMILY SSF81665 4 120 2.09E-10 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CLM_1772 f52565ca1a2b4b5f626d1d137efa3bcd 124 Gene3D G3DSA:1.20.1110.10 6 121 1.3E-6 T 13-10-2018 CLM_1772 f52565ca1a2b4b5f626d1d137efa3bcd 124 Pfam PF00689 Cation transporting ATPase, C-terminus 2 115 4.9E-10 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 CLM_0400 c47acd9dba3884790f78d2d85eef8af1 44 TIGRFAM TIGR04223 quorum_AgrD: cyclic lactone autoinducer peptide 6 42 2.0E-13 T 13-10-2018 IPR009229 Staphylococcal AgrD CLM_1768 c1692312cc5b5a1d702818855bf2d71c 402 PIRSF PIRSF033271 1 402 2.7E-148 T 13-10-2018 IPR008322 Uncharacterised protein family UPF0261 CLM_1768 c1692312cc5b5a1d702818855bf2d71c 402 Pfam PF06792 Uncharacterised protein family (UPF0261) 3 400 1.7E-166 T 13-10-2018 IPR008322 Uncharacterised protein family UPF0261 CLM_1768 c1692312cc5b5a1d702818855bf2d71c 402 Gene3D G3DSA:3.40.50.12020 1 176 2.1E-60 T 13-10-2018 CLM_1768 c1692312cc5b5a1d702818855bf2d71c 402 Gene3D G3DSA:3.40.50.12030 183 402 8.4E-92 T 13-10-2018 CLM_2780 57429413a3ff5b6cca4cca61e58fff67 434 Pfam PF13375 RnfC Barrel sandwich hybrid domain 3 61 6.2E-13 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CLM_2780 57429413a3ff5b6cca4cca61e58fff67 434 Gene3D G3DSA:3.40.50.11540 89 234 9.7E-18 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2780 57429413a3ff5b6cca4cca61e58fff67 434 SUPERFAMILY SSF142984 254 309 4.45E-5 T 13-10-2018 CLM_2780 57429413a3ff5b6cca4cca61e58fff67 434 SUPERFAMILY SSF142019 42 245 2.35E-50 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_2780 57429413a3ff5b6cca4cca61e58fff67 434 TIGRFAM TIGR04481 PR_assoc_PrdC: proline reductase-associated electron transfer protein PrdC 5 429 1.7E-199 T 13-10-2018 IPR031001 Proline reductase-associated electron transfer protein PrdC CLM_2780 57429413a3ff5b6cca4cca61e58fff67 434 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 84 227 1.5E-42 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CLM_0140 bc705c6088933c38748a6340bbe522dc 112 SUPERFAMILY SSF46785 12 107 8.35E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0140 bc705c6088933c38748a6340bbe522dc 112 Gene3D G3DSA:1.10.10.10 1 111 1.2E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0140 bc705c6088933c38748a6340bbe522dc 112 Pfam PF03551 Transcriptional regulator PadR-like family 16 86 2.1E-21 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal CLM_3048 0350c83deaee302273e97a1b74e6babb 256 Pfam PF14393 Domain of unknown function (DUF4422) 4 225 1.3E-99 T 13-10-2018 IPR025536 Domain of unknown function DUF4422 CLM_0188 f69d174a0576a4a3b6f0f0449f8b44f8 209 Pfam PF14681 Uracil phosphoribosyltransferase 8 208 6.7E-75 T 13-10-2018 CLM_0188 f69d174a0576a4a3b6f0f0449f8b44f8 209 Gene3D G3DSA:3.40.50.2020 2 209 5.7E-81 T 13-10-2018 CLM_0188 f69d174a0576a4a3b6f0f0449f8b44f8 209 SUPERFAMILY SSF53271 5 207 4.06E-71 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CLM_0188 f69d174a0576a4a3b6f0f0449f8b44f8 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 209 3.2E-90 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CLM_0188 f69d174a0576a4a3b6f0f0449f8b44f8 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 47.426 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CLM_2599 84acd2e2fb521d9663f1e10c7e631814 273 ProDom PD119415 TRANSGLUTAMINASE TRANSFERASE ACYLTRANSFERASE GAMMA-GLUTAMYLTRANSFERASE PROTEIN-GLUTAMINE TGASE SPORULATION TGL 24 240 8.0E-59 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 CLM_2599 84acd2e2fb521d9663f1e10c7e631814 273 Hamap MF_00727 Protein-glutamine gamma-glutamyltransferase [tgl]. 1 249 39.653 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 CLM_2693 10c50016f38245d12b368e7bf737ccf4 427 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 74 223 4.2E-6 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like CLM_3161 c8dd28450a042caa5cb382a70cf88b68 377 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 212 371 2.8E-21 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 CLM_3161 c8dd28450a042caa5cb382a70cf88b68 377 Gene3D G3DSA:3.30.300.210 228 374 3.0E-14 T 13-10-2018 IPR038501 Spore germination GerAC superfamily CLM_3403 1cb545073bf9812385cf8d3dda10db8e 179 Pfam PF13420 Acetyltransferase (GNAT) domain 27 158 1.8E-7 T 13-10-2018 CLM_3403 1cb545073bf9812385cf8d3dda10db8e 179 SUPERFAMILY SSF55729 9 156 3.54E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3403 1cb545073bf9812385cf8d3dda10db8e 179 Gene3D G3DSA:3.40.630.30 6 170 2.5E-6 T 13-10-2018 CLM_3023 93607b37d9c41fb9ebafbd941c7e95eb 462 Gene3D G3DSA:3.30.750.140 315 433 5.1E-10 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily CLM_3023 93607b37d9c41fb9ebafbd941c7e95eb 462 Pfam PF02120 Flagellar hook-length control protein FliK 335 414 7.7E-16 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal CLM_0553 140d01e7c12d887e190dc3800d194a19 64 Pfam PF11188 Protein of unknown function (DUF2975) 31 64 1.4E-9 T 13-10-2018 IPR021354 Protein of unknown function DUF2975 CLM_0380 ebef2c10132b544546293c9bef4010a0 335 Pfam PF01032 FecCD transport family 19 333 6.9E-88 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_0380 ebef2c10132b544546293c9bef4010a0 335 SUPERFAMILY SSF81345 6 333 2.75E-79 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_0380 ebef2c10132b544546293c9bef4010a0 335 Gene3D G3DSA:1.10.3470.10 7 335 5.4E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_3590 c384d80a9783b680a102e126bb48f9e4 195 Pfam PF01613 Flavin reductase like domain 14 148 9.1E-24 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CLM_3590 c384d80a9783b680a102e126bb48f9e4 195 SMART SM00903 11 156 1.5E-19 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CLM_3590 c384d80a9783b680a102e126bb48f9e4 195 Gene3D G3DSA:2.30.110.10 1 195 2.6E-53 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_3590 c384d80a9783b680a102e126bb48f9e4 195 SUPERFAMILY SSF50475 9 174 6.87E-43 T 13-10-2018 CLM_1497 5f7692a631b1f1e2c8f5631ca16cf023 124 Gene3D G3DSA:1.10.10.10 9 124 8.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1497 5f7692a631b1f1e2c8f5631ca16cf023 124 SMART SM00345 13 76 7.5E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_1497 5f7692a631b1f1e2c8f5631ca16cf023 124 SUPERFAMILY SSF46785 6 78 1.07E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1497 5f7692a631b1f1e2c8f5631ca16cf023 124 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 9.3E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 SUPERFAMILY SSF48452 77 169 7.05E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 SMART SM00028 123 156 4.6E-9 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 SMART SM00028 7 40 20.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 Pfam PF13174 Tetratricopeptide repeat 373 403 0.12 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 Gene3D G3DSA:1.25.40.10 283 417 3.1E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 SUPERFAMILY SSF48452 9 360 5.31E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 Gene3D G3DSA:1.25.40.10 2 63 3.3E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 Gene3D G3DSA:1.25.40.10 64 179 2.7E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3903 39f32be6526c7f406eb219c5b7783020 417 Pfam PF00515 Tetratricopeptide repeat 124 156 1.1E-10 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CLM_2426 ad91c5b316a10b3a3c969594c0f54775 118 Gene3D G3DSA:3.30.420.130 1 104 2.0E-27 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily CLM_2426 ad91c5b316a10b3a3c969594c0f54775 118 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 8 96 1.8E-20 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CLM_2426 ad91c5b316a10b3a3c969594c0f54775 118 SUPERFAMILY SSF53146 1 116 8.5E-33 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily CLM_1233 9a62400d68aa0992d8bd43a6364ace2d 376 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 220 233 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CLM_1233 9a62400d68aa0992d8bd43a6364ace2d 376 Pfam PF00155 Aminotransferase class I and II 48 359 8.7E-45 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CLM_1233 9a62400d68aa0992d8bd43a6364ace2d 376 SUPERFAMILY SSF53383 17 370 4.26E-76 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1233 9a62400d68aa0992d8bd43a6364ace2d 376 Gene3D G3DSA:3.90.1150.10 15 363 1.3E-118 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1233 9a62400d68aa0992d8bd43a6364ace2d 376 Gene3D G3DSA:3.40.640.10 57 273 1.3E-118 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_3558 cd0f584133d51af73fb6a7560ab0461c 90 Gene3D G3DSA:1.10.8.910 20 72 1.6E-9 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily CLM_3558 cd0f584133d51af73fb6a7560ab0461c 90 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 28 67 1.1E-9 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 CLM_2175 77dc835d453151588539d562d7e42550 332 SUPERFAMILY SSF52058 86 320 1.47E-39 T 13-10-2018 CLM_2175 77dc835d453151588539d562d7e42550 332 SMART SM00365 233 254 530.0 T 13-10-2018 CLM_2175 77dc835d453151588539d562d7e42550 332 SMART SM00365 167 188 18.0 T 13-10-2018 CLM_2175 77dc835d453151588539d562d7e42550 332 SMART SM00365 255 276 130.0 T 13-10-2018 CLM_2175 77dc835d453151588539d562d7e42550 332 SMART SM00365 189 210 0.99 T 13-10-2018 CLM_2175 77dc835d453151588539d562d7e42550 332 SMART SM00365 211 232 0.086 T 13-10-2018 CLM_2175 77dc835d453151588539d562d7e42550 332 Gene3D G3DSA:3.80.10.10 25 331 1.1E-48 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CLM_2175 77dc835d453151588539d562d7e42550 332 Pfam PF12799 Leucine Rich repeats (2 copies) 168 207 2.0E-7 T 13-10-2018 IPR025875 Leucine rich repeat 4 CLM_2661 5483f73f696d7fe30ea3156da453c867 602 Pfam PF04233 Phage Mu protein F like protein 202 307 3.3E-18 T 13-10-2018 IPR006528 Phage head morphogenesis domain CLM_2661 5483f73f696d7fe30ea3156da453c867 602 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 203 310 4.3E-28 T 13-10-2018 IPR006528 Phage head morphogenesis domain CLM_3163 4c0492f5a1ec84fe7a97231bc308ab8d 498 PIRSF PIRSF005690 1 486 3.2E-154 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 CLM_3163 4c0492f5a1ec84fe7a97231bc308ab8d 498 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 14 471 1.2E-149 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 CLM_3662 5e97b5390a323b6f053b8379f302ba12 213 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 209 1.8E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_3662 5e97b5390a323b6f053b8379f302ba12 213 Gene3D G3DSA:1.10.3720.10 70 213 5.1E-23 T 13-10-2018 IPR035906 MetI-like superfamily CLM_3662 5e97b5390a323b6f053b8379f302ba12 213 SUPERFAMILY SSF161098 72 210 1.83E-27 T 13-10-2018 IPR035906 MetI-like superfamily CLM_0696 b61203f0c6ae933a3fadfcef87aa61ca 159 SUPERFAMILY SSF55729 1 151 4.96E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0696 b61203f0c6ae933a3fadfcef87aa61ca 159 Gene3D G3DSA:3.40.630.30 3 159 6.5E-15 T 13-10-2018 CLM_0696 b61203f0c6ae933a3fadfcef87aa61ca 159 Pfam PF00583 Acetyltransferase (GNAT) family 48 147 2.2E-6 T 13-10-2018 IPR000182 GNAT domain CLM_1823 b0e9a223db64f5db909803a7a08d3207 235 SMART SM00382 30 214 4.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1823 b0e9a223db64f5db909803a7a08d3207 235 SUPERFAMILY SSF52540 4 210 1.62E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1823 b0e9a223db64f5db909803a7a08d3207 235 Pfam PF00005 ABC transporter 21 158 1.8E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1823 b0e9a223db64f5db909803a7a08d3207 235 Gene3D G3DSA:3.40.50.300 1 235 1.3E-56 T 13-10-2018 CLM_1823 b0e9a223db64f5db909803a7a08d3207 235 TIGRFAM TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit 6 228 8.9E-122 T 13-10-2018 IPR022501 Gallidermin ABC transporter, ATP-binding subunit CLM_1234 6faa87b87b1c32760e255efa219b603c 126 Pfam PF00571 CBS domain 70 121 6.7E-11 T 13-10-2018 IPR000644 CBS domain CLM_1234 6faa87b87b1c32760e255efa219b603c 126 Pfam PF00571 CBS domain 4 57 1.2E-11 T 13-10-2018 IPR000644 CBS domain CLM_1234 6faa87b87b1c32760e255efa219b603c 126 SUPERFAMILY SSF54631 4 121 2.53E-31 T 13-10-2018 CLM_1234 6faa87b87b1c32760e255efa219b603c 126 Gene3D G3DSA:3.10.580.10 2 125 8.6E-34 T 13-10-2018 CLM_1234 6faa87b87b1c32760e255efa219b603c 126 SMART SM00116 9 57 9.0E-6 T 13-10-2018 IPR000644 CBS domain CLM_1234 6faa87b87b1c32760e255efa219b603c 126 SMART SM00116 74 122 1.7E-7 T 13-10-2018 IPR000644 CBS domain CLM_0305 e189deb20b4130e8a54b7533cb8cf8ac 94 SUPERFAMILY SSF53927 2 94 7.1E-22 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CLM_0305 e189deb20b4130e8a54b7533cb8cf8ac 94 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 13 94 1.0E-5 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CLM_0305 e189deb20b4130e8a54b7533cb8cf8ac 94 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 94 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CLM_0305 e189deb20b4130e8a54b7533cb8cf8ac 94 Gene3D G3DSA:3.40.140.10 2 94 1.9E-25 T 13-10-2018 CLM_3795 e5dcfb22b9c7090a9a892608561929e2 552 Pfam PF01740 STAS domain 443 542 2.6E-12 T 13-10-2018 IPR002645 STAS domain CLM_3795 e5dcfb22b9c7090a9a892608561929e2 552 Gene3D G3DSA:3.30.750.24 428 550 1.0E-24 T 13-10-2018 IPR036513 STAS domain superfamily CLM_3795 e5dcfb22b9c7090a9a892608561929e2 552 Pfam PF00916 Sulfate permease family 22 385 5.7E-87 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 CLM_3795 e5dcfb22b9c7090a9a892608561929e2 552 SUPERFAMILY SSF52091 442 546 2.55E-13 T 13-10-2018 IPR036513 STAS domain superfamily CLM_2643 68a2f61c8336a5a7619f11e4239cb5ab 114 Pfam PF10844 Protein of unknown function (DUF2577) 7 112 5.4E-30 T 13-10-2018 IPR022555 Protein of unknown function, DUF2577 CLM_2643 68a2f61c8336a5a7619f11e4239cb5ab 114 ProDom PD028957 PBSX RELATED XKDR ELEMENT LIN1285 PHAGE PHAGE-LIKE YQBR 5 113 9.0E-7 T 13-10-2018 IPR022555 Protein of unknown function, DUF2577 CLM_3179 21bd24d51139e06828a37b86bbf33944 373 Pfam PF12671 Putative amidase domain 209 368 3.8E-43 T 13-10-2018 IPR024301 Putative amidase domain CLM_3706 120b1b6dcab1b1fc68fb61958f4ec2be 99 PIRSF PIRSF012508 1 99 5.3E-47 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD CLM_3706 120b1b6dcab1b1fc68fb61958f4ec2be 99 Pfam PF01371 Trp repressor protein 12 95 1.8E-32 T 13-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 CLM_3706 120b1b6dcab1b1fc68fb61958f4ec2be 99 Gene3D G3DSA:1.10.1270.10 2 99 6.6E-40 T 13-10-2018 IPR038116 TrpR-like superfamily CLM_3706 120b1b6dcab1b1fc68fb61958f4ec2be 99 SUPERFAMILY SSF48295 2 96 4.55E-33 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CLM_3706 120b1b6dcab1b1fc68fb61958f4ec2be 99 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 10 96 4.1E-45 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD CLM_3511 813003d71179746ea989ea06d58d1de8 435 Pfam PF13440 Polysaccharide biosynthesis protein 27 318 3.1E-15 T 13-10-2018 CLM_3511 813003d71179746ea989ea06d58d1de8 435 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 323 405 9.9E-16 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_2055 04b023c7d82f4e13e0fd958d7fe01c86 247 Gene3D G3DSA:3.90.226.10 2 200 1.1E-27 T 13-10-2018 CLM_2055 04b023c7d82f4e13e0fd958d7fe01c86 247 Pfam PF00574 Clp protease 45 177 1.5E-19 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLM_2055 04b023c7d82f4e13e0fd958d7fe01c86 247 SUPERFAMILY SSF52096 4 177 7.06E-27 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 26 173 1.2E-41 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 SUPERFAMILY SSF56420 16 172 1.7E-47 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 Gene3D G3DSA:3.90.45.10 12 178 1.0E-49 T 13-10-2018 IPR036821 Peptide deformylase superfamily CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 Pfam PF01327 Polypeptide deformylase 26 171 1.2E-44 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 PIRSF PIRSF004749 3 176 1.1E-45 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 PRINTS PR01576 Peptide deformylase signature 110 121 2.7E-30 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 PRINTS PR01576 Peptide deformylase signature 122 140 2.7E-30 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 PRINTS PR01576 Peptide deformylase signature 55 84 2.7E-30 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 PRINTS PR01576 Peptide deformylase signature 141 170 2.7E-30 T 13-10-2018 IPR023635 Peptide deformylase CLM_2985 d055156e99c82b0f6cd420c2b1accbb4 178 Hamap MF_00163 Peptide deformylase [def]. 24 177 26.453 T 13-10-2018 IPR023635 Peptide deformylase CLM_1986 515fc3fd27a87de9446c4baf6925c755 80 SUPERFAMILY SSF52833 3 78 3.13E-11 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_1986 515fc3fd27a87de9446c4baf6925c755 80 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 3 71 4.8E-7 T 13-10-2018 CLM_1986 515fc3fd27a87de9446c4baf6925c755 80 Gene3D G3DSA:3.40.30.10 2 78 2.7E-14 T 13-10-2018 CLM_0038 3a7eca5677d8427a82419353496673a2 113 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 12 106 22.368 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CLM_0038 3a7eca5677d8427a82419353496673a2 113 Pfam PF02575 YbaB/EbfC DNA-binding family 18 108 5.2E-33 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CLM_0038 3a7eca5677d8427a82419353496673a2 113 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 13 112 1.9E-27 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CLM_0038 3a7eca5677d8427a82419353496673a2 113 PIRSF PIRSF004555 10 113 6.1E-38 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CLM_0038 3a7eca5677d8427a82419353496673a2 113 Gene3D G3DSA:3.30.1310.10 6 113 1.8E-37 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CLM_0038 3a7eca5677d8427a82419353496673a2 113 SUPERFAMILY SSF82607 18 112 1.83E-30 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CLM_2266 30917dcd51d0ef4c931ca2a95bc196e2 335 Gene3D G3DSA:3.90.550.10 33 226 5.9E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_2266 30917dcd51d0ef4c931ca2a95bc196e2 335 Pfam PF00535 Glycosyl transferase family 2 35 197 5.9E-16 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CLM_2266 30917dcd51d0ef4c931ca2a95bc196e2 335 SUPERFAMILY SSF53448 35 218 7.5E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3723 4f033ece504f65d44e4aacf58afd5951 407 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 43 399 1.1E-78 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_3723 4f033ece504f65d44e4aacf58afd5951 407 Gene3D G3DSA:3.40.50.11900 297 406 4.3E-5 T 13-10-2018 CLM_3723 4f033ece504f65d44e4aacf58afd5951 407 Gene3D G3DSA:1.20.1270.370 18 224 1.0E-8 T 13-10-2018 CLM_3723 4f033ece504f65d44e4aacf58afd5951 407 Gene3D G3DSA:3.40.50.11890 36 179 1.0E-8 T 13-10-2018 CLM_2850 2386cf515a18f5a25652871f9ef43f86 222 Pfam PF09557 Domain of unknown function (DUF2382) 95 200 1.6E-26 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_2850 2386cf515a18f5a25652871f9ef43f86 222 TIGRFAM TIGR02271 TIGR02271: conserved domain 95 208 1.6E-30 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_3506 3da6fc0043e8c862239ea1afa6e9bd7a 352 Gene3D G3DSA:3.40.50.2000 182 335 1.8E-131 T 13-10-2018 CLM_3506 3da6fc0043e8c862239ea1afa6e9bd7a 352 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 26 348 3.2E-117 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CLM_3506 3da6fc0043e8c862239ea1afa6e9bd7a 352 SUPERFAMILY SSF53756 1 350 1.32E-111 T 13-10-2018 CLM_3506 3da6fc0043e8c862239ea1afa6e9bd7a 352 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 350 1.6E-103 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 CLM_3506 3da6fc0043e8c862239ea1afa6e9bd7a 352 Gene3D G3DSA:3.40.50.2000 6 345 1.8E-131 T 13-10-2018 CLM_1238 6fc909245cae852142a24afaf639f990 131 SUPERFAMILY SSF141371 46 127 3.92E-5 T 13-10-2018 CLM_1238 6fc909245cae852142a24afaf639f990 131 Gene3D G3DSA:2.40.10.220 21 131 1.5E-7 T 13-10-2018 CLM_1238 6fc909245cae852142a24afaf639f990 131 Pfam PF07238 PilZ domain 20 128 1.2E-12 T 13-10-2018 IPR009875 PilZ domain GO:0035438 CLM_2402 dd81792fe9a8644ffa868e84aaa9b9b3 423 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 75 416 2.3E-51 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit CLM_2402 dd81792fe9a8644ffa868e84aaa9b9b3 423 Gene3D G3DSA:3.40.50.11900 305 421 3.1E-14 T 13-10-2018 CLM_3271 ff0b51cbbecb50f9ab92ff6be4ff3ef6 205 Gene3D G3DSA:3.40.50.170 1 204 1.0E-69 T 13-10-2018 CLM_3271 ff0b51cbbecb50f9ab92ff6be4ff3ef6 205 SUPERFAMILY SSF53328 3 201 1.02E-51 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_3271 ff0b51cbbecb50f9ab92ff6be4ff3ef6 205 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 195 3.0E-61 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CLM_3271 ff0b51cbbecb50f9ab92ff6be4ff3ef6 205 Pfam PF00551 Formyl transferase 3 185 1.4E-50 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CLM_3271 ff0b51cbbecb50f9ab92ff6be4ff3ef6 205 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 191 30.383 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CLM_2726 e7564f884edeff36f2ebdf87c19aa3c7 238 Pfam PF00696 Amino acid kinase family 7 213 1.1E-28 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CLM_2726 e7564f884edeff36f2ebdf87c19aa3c7 238 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 235 4.7E-98 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CLM_2726 e7564f884edeff36f2ebdf87c19aa3c7 238 Gene3D G3DSA:3.40.1160.10 1 238 9.6E-79 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_2726 e7564f884edeff36f2ebdf87c19aa3c7 238 PIRSF PIRSF005650 1 238 1.4E-94 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 CLM_2726 e7564f884edeff36f2ebdf87c19aa3c7 238 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 235 44.398 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CLM_2726 e7564f884edeff36f2ebdf87c19aa3c7 238 SUPERFAMILY SSF53633 4 236 1.44E-71 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 SMART SM00850 147 239 3.8E-24 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 Pfam PF04397 LytTr DNA-binding domain 148 237 6.9E-25 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 SUPERFAMILY SSF52172 1 126 1.21E-13 T 13-10-2018 IPR011006 CheY-like superfamily CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 SMART SM00448 2 120 1.1E-10 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 Gene3D G3DSA:2.40.50.1020 138 239 1.1E-33 T 13-10-2018 CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 Gene3D G3DSA:3.40.50.2300 2 137 5.3E-41 T 13-10-2018 CLM_1338 1ea3effc6e7be9b77efbafe8f1a0d605 239 Pfam PF00072 Response regulator receiver domain 4 115 1.7E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CLM_2004 186f4c5b8e0085c1f777945785e8a72f 207 PRINTS PR00164 ABC-2 type transport system membrane protein signature 127 146 3.8E-8 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_2004 186f4c5b8e0085c1f777945785e8a72f 207 PRINTS PR00164 ABC-2 type transport system membrane protein signature 90 114 3.8E-8 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_2004 186f4c5b8e0085c1f777945785e8a72f 207 PRINTS PR00164 ABC-2 type transport system membrane protein signature 7 29 3.8E-8 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CLM_2004 186f4c5b8e0085c1f777945785e8a72f 207 Pfam PF01061 ABC-2 type transporter 12 170 7.6E-19 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CLM_4122 9d7ec91951b92384180ab52881f701aa 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.2E-5 T 13-10-2018 CLM_4122 9d7ec91951b92384180ab52881f701aa 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 411 433 4.2E-5 T 13-10-2018 CLM_4122 9d7ec91951b92384180ab52881f701aa 461 PIRSF PIRSF038984 1 88 1.6E-10 T 13-10-2018 IPR028348 FAD dependent protein CLM_4122 9d7ec91951b92384180ab52881f701aa 461 PIRSF PIRSF038984 114 460 9.4E-20 T 13-10-2018 IPR028348 FAD dependent protein CLM_4122 9d7ec91951b92384180ab52881f701aa 461 Gene3D G3DSA:3.50.50.60 1 96 7.0E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4122 9d7ec91951b92384180ab52881f701aa 461 Gene3D G3DSA:3.50.50.60 107 235 9.8E-7 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_4122 9d7ec91951b92384180ab52881f701aa 461 SUPERFAMILY SSF51905 2 457 9.61E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CLM_1415 7bdc2e2d6dc7a3359d42923a3511d082 428 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 1 426 4.6E-210 T 13-10-2018 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 CLM_1415 7bdc2e2d6dc7a3359d42923a3511d082 428 PIRSF PIRSF011588 1 428 2.8E-216 T 13-10-2018 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta GO:0050485|GO:0055114 CLM_0155 38915dfad1ef6d93c4f84306636b59bb 337 SUPERFAMILY SSF56112 18 334 3.7E-46 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CLM_0155 38915dfad1ef6d93c4f84306636b59bb 337 Gene3D G3DSA:3.90.1200.10 101 332 2.8E-66 T 13-10-2018 CLM_0155 38915dfad1ef6d93c4f84306636b59bb 337 Pfam PF01633 Choline/ethanolamine kinase 149 252 1.4E-8 T 13-10-2018 CLM_0155 38915dfad1ef6d93c4f84306636b59bb 337 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 26 332 5.0E-95 T 13-10-2018 IPR014255 Spore coat protein CotS CLM_0155 38915dfad1ef6d93c4f84306636b59bb 337 Gene3D G3DSA:3.30.200.20 1 100 2.6E-18 T 13-10-2018 CLM_1322 9d37c82f02e2a3f551a451f6c0f4b481 210 Gene3D G3DSA:1.20.120.680 5 206 8.3E-66 T 13-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 CLM_1322 9d37c82f02e2a3f551a451f6c0f4b481 210 SUPERFAMILY SSF101262 2 206 1.28E-59 T 13-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 CLM_1322 9d37c82f02e2a3f551a451f6c0f4b481 210 Pfam PF04961 Formiminotransferase-cyclodeaminase 5 185 1.0E-64 T 13-10-2018 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 CLM_2790 c0a40d7c69e12fe6f92fa54759ff0e3c 409 Hamap MF_01539 UPF0348 protein . 2 403 35.173 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 CLM_2790 c0a40d7c69e12fe6f92fa54759ff0e3c 409 SUPERFAMILY SSF52374 3 225 2.47E-16 T 13-10-2018 CLM_2790 c0a40d7c69e12fe6f92fa54759ff0e3c 409 Gene3D G3DSA:3.40.50.620 1 187 9.4E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_2790 c0a40d7c69e12fe6f92fa54759ff0e3c 409 Pfam PF05636 HIGH Nucleotidyl Transferase 1 390 5.2E-134 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 CLM_3715 9676a54ade38ec7f85cadcce2ff29d8a 177 SUPERFAMILY SSF55729 8 175 1.3E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3715 9676a54ade38ec7f85cadcce2ff29d8a 177 Pfam PF00583 Acetyltransferase (GNAT) family 48 151 1.8E-18 T 13-10-2018 IPR000182 GNAT domain CLM_3715 9676a54ade38ec7f85cadcce2ff29d8a 177 Gene3D G3DSA:3.40.630.30 10 177 2.1E-38 T 13-10-2018 CLM_1509 d52ea16d7bc4bf8db3f94a323db57106 324 SUPERFAMILY SSF103481 194 298 4.05E-15 T 13-10-2018 CLM_1509 d52ea16d7bc4bf8db3f94a323db57106 324 Pfam PF00892 EamA-like transporter family 158 296 5.7E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_1509 d52ea16d7bc4bf8db3f94a323db57106 324 Pfam PF00892 EamA-like transporter family 10 144 1.4E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_1509 d52ea16d7bc4bf8db3f94a323db57106 324 SUPERFAMILY SSF103481 64 144 2.22E-11 T 13-10-2018 CLM_2190 4e0a99b9d6719cc9f35a2a30672f614f 188 Pfam PF09819 ABC-type cobalt transport system, permease component 8 126 6.9E-30 T 13-10-2018 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 Gene3D G3DSA:3.90.1520.10 1 183 1.3E-59 T 13-10-2018 IPR038158 H-NOX domain superfamily GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 SUPERFAMILY SSF58104 299 596 3.53E-57 T 13-10-2018 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 Pfam PF07700 Haem-NO-binding 2 158 1.0E-41 T 13-10-2018 IPR011644 Heme NO-binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 Gene3D G3DSA:1.10.287.950 251 585 8.7E-54 T 13-10-2018 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 SMART SM00283 322 583 1.3E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 382 567 7.5E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 SUPERFAMILY SSF111126 1 181 3.45E-44 T 13-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 336 365 5.9E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_4051 15cf8c39611f91931b439ed0b4b9282f 598 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 449 478 5.9E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CLM_4071 77fdfb83601080f8e151a38bc1721844 498 Pfam PF11230 Protein of unknown function (DUF3029) 13 495 2.0E-229 T 13-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted CLM_4071 77fdfb83601080f8e151a38bc1721844 498 PIRSF PIRSF028991 1 498 2.6E-181 T 13-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted CLM_4071 77fdfb83601080f8e151a38bc1721844 498 SUPERFAMILY SSF51998 6 470 7.02E-82 T 13-10-2018 CLM_4071 77fdfb83601080f8e151a38bc1721844 498 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 3 495 6.6E-245 T 13-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted CLM_1081 340b6db3111b398cf3fcd817227c5bef 173 SUPERFAMILY SSF55469 2 167 7.2E-37 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_1081 340b6db3111b398cf3fcd817227c5bef 173 Pfam PF00881 Nitroreductase family 5 58 5.2E-11 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1081 340b6db3111b398cf3fcd817227c5bef 173 Pfam PF00881 Nitroreductase family 67 149 1.7E-7 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1081 340b6db3111b398cf3fcd817227c5bef 173 Gene3D G3DSA:3.40.109.10 1 172 2.3E-45 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_0844 ebb50b593f79c5ea7470916189bd030c 86 SUPERFAMILY SSF52540 5 45 5.04E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0117 83c86ce00df8d5158fd857a980cb3a98 190 Pfam PF03167 Uracil DNA glycosylase superfamily 28 175 2.3E-44 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0117 83c86ce00df8d5158fd857a980cb3a98 190 SMART SM00986 28 175 5.6E-37 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0117 83c86ce00df8d5158fd857a980cb3a98 190 Gene3D G3DSA:3.40.470.10 2 189 6.2E-69 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0117 83c86ce00df8d5158fd857a980cb3a98 190 SUPERFAMILY SSF52141 4 183 3.04E-61 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CLM_0117 83c86ce00df8d5158fd857a980cb3a98 190 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 14 180 1.6E-58 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 CLM_0117 83c86ce00df8d5158fd857a980cb3a98 190 SMART SM00987 28 175 5.6E-37 T 13-10-2018 CLM_0118 1150011e31f71e14e560fff17a8cbfaf 144 SUPERFAMILY SSF46785 7 140 6.93E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_0118 1150011e31f71e14e560fff17a8cbfaf 144 Gene3D G3DSA:1.10.10.10 1 142 8.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0118 1150011e31f71e14e560fff17a8cbfaf 144 Pfam PF01047 MarR family 33 90 1.1E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0118 1150011e31f71e14e560fff17a8cbfaf 144 SMART SM00347 26 126 3.0E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_0524 35c4ce3ac327346efd2cc1b5f60996c4 132 Pfam PF00583 Acetyltransferase (GNAT) family 25 121 3.0E-13 T 13-10-2018 IPR000182 GNAT domain CLM_0524 35c4ce3ac327346efd2cc1b5f60996c4 132 SUPERFAMILY SSF55729 3 124 3.6E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_0524 35c4ce3ac327346efd2cc1b5f60996c4 132 Gene3D G3DSA:3.40.630.30 10 128 2.8E-21 T 13-10-2018 CLM_3807 af374e03ae8fc0714ae353e0ee619fec 430 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 13 419 5.3E-120 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 CLM_3807 af374e03ae8fc0714ae353e0ee619fec 430 Pfam PF02378 Phosphotransferase system, EIIC 29 349 5.2E-54 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_3807 af374e03ae8fc0714ae353e0ee619fec 430 PIRSF PIRSF006351 1 429 6.3E-134 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 CLM_2594 401679d5280075b17098a9f004ff3ca5 253 SMART SM00479 2 183 6.3E-10 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_2594 401679d5280075b17098a9f004ff3ca5 253 SUPERFAMILY SSF53098 1 186 6.33E-29 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CLM_2594 401679d5280075b17098a9f004ff3ca5 253 Gene3D G3DSA:3.30.420.10 1 235 3.4E-39 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CLM_2594 401679d5280075b17098a9f004ff3ca5 253 Pfam PF00929 Exonuclease 4 174 1.9E-14 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CLM_0927 854ff240521e70a63e0129220d179d7f 306 Gene3D G3DSA:3.40.50.300 2 239 6.0E-57 T 13-10-2018 CLM_0927 854ff240521e70a63e0129220d179d7f 306 Pfam PF00005 ABC transporter 22 162 2.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_0927 854ff240521e70a63e0129220d179d7f 306 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0927 854ff240521e70a63e0129220d179d7f 306 SMART SM00382 30 212 5.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0927 854ff240521e70a63e0129220d179d7f 306 SUPERFAMILY SSF52540 4 224 1.54E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1341 81bfa416d9bc694e09998ad0441d2a20 307 SMART SM00382 31 211 1.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_1341 81bfa416d9bc694e09998ad0441d2a20 307 Gene3D G3DSA:3.40.50.300 1 240 1.3E-60 T 13-10-2018 CLM_1341 81bfa416d9bc694e09998ad0441d2a20 307 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_1341 81bfa416d9bc694e09998ad0441d2a20 307 SUPERFAMILY SSF52540 5 227 1.09E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1341 81bfa416d9bc694e09998ad0441d2a20 307 Pfam PF00005 ABC transporter 23 162 3.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_2723 de8dd550ddd10bdfabfb995d67dc983c 265 Pfam PF01148 Cytidylyltransferase family 4 261 6.9E-58 T 13-10-2018 CLM_2723 de8dd550ddd10bdfabfb995d67dc983c 265 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 220 246 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 CLM_3055 601df68bbf6863875d6b8cd720602dab 51 Pfam PF14070 Putative motility protein 1 49 1.0E-16 T 13-10-2018 IPR025906 Putative motility protein CLM_2905 acc455ffdb6c08f300097edcb83ceae3 89 Pfam PF02583 Metal-sensitive transcriptional repressor 9 84 9.9E-26 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CLM_2905 acc455ffdb6c08f300097edcb83ceae3 89 Gene3D G3DSA:1.20.58.1000 3 89 3.7E-28 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily CLM_2860 6977f378fc050abf5579052f508510b2 556 SUPERFAMILY SSF56601 191 552 5.82E-65 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CLM_2860 6977f378fc050abf5579052f508510b2 556 Pfam PF00905 Penicillin binding protein transpeptidase domain 255 549 6.5E-47 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CLM_2860 6977f378fc050abf5579052f508510b2 556 Gene3D G3DSA:3.40.710.10 226 555 3.1E-65 T 13-10-2018 CLM_2870 5eba329c18f6a3f61fbd00868c48db9c 83 Pfam PF06135 Bacterial protein of unknown function (DUF965) 4 80 1.2E-34 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 CLM_2870 5eba329c18f6a3f61fbd00868c48db9c 83 PIRSF PIRSF037258 1 83 4.4E-37 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 CLM_2870 5eba329c18f6a3f61fbd00868c48db9c 83 Hamap MF_01507 UPF0297 protein . 1 83 23.014 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 CLM_1270 28c0d500a1c71eb6a7debfd27df2ab71 183 Gene3D G3DSA:3.40.630.30 6 182 5.0E-46 T 13-10-2018 CLM_1270 28c0d500a1c71eb6a7debfd27df2ab71 183 Pfam PF13302 Acetyltransferase (GNAT) domain 12 151 1.4E-21 T 13-10-2018 IPR000182 GNAT domain CLM_1270 28c0d500a1c71eb6a7debfd27df2ab71 183 SUPERFAMILY SSF55729 6 176 3.77E-42 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_3574 169807f75c2248d343398dfe8a85aed4 86 TIGRFAM TIGR03905 TIGR03905_4_Cys: uncharacterized protein TIGR03905 2 79 2.2E-43 T 13-10-2018 IPR023806 Conserved hypothetical protein CHP03905 CLM_3574 169807f75c2248d343398dfe8a85aed4 86 Pfam PF12637 TSCPD domain 4 77 2.8E-32 T 13-10-2018 IPR024434 TSCPD domain CLM_2899 2fa7f8553421f868fcfa3a5cd211091d 246 SUPERFAMILY SSF56214 141 210 1.64E-10 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_2899 2fa7f8553421f868fcfa3a5cd211091d 246 SUPERFAMILY SSF56214 46 133 2.35E-11 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_2899 2fa7f8553421f868fcfa3a5cd211091d 246 Gene3D G3DSA:3.90.470.20 53 140 2.5E-26 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_2899 2fa7f8553421f868fcfa3a5cd211091d 246 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 141 215 1.3E-9 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_2899 2fa7f8553421f868fcfa3a5cd211091d 246 Gene3D G3DSA:3.90.470.20 141 229 2.5E-26 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CLM_0121 9a07302f68bc0d8ba20d839e3382b27c 264 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CLM_0121 9a07302f68bc0d8ba20d839e3382b27c 264 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 6 256 1.4E-86 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 CLM_0121 9a07302f68bc0d8ba20d839e3382b27c 264 Gene3D G3DSA:3.20.20.140 1 258 8.2E-100 T 13-10-2018 CLM_0121 9a07302f68bc0d8ba20d839e3382b27c 264 Pfam PF01026 TatD related DNase 7 256 4.2E-80 T 13-10-2018 IPR001130 TatD family GO:0016788 CLM_0121 9a07302f68bc0d8ba20d839e3382b27c 264 SUPERFAMILY SSF51556 4 258 2.72E-87 T 13-10-2018 IPR032466 Metal-dependent hydrolase CLM_0121 9a07302f68bc0d8ba20d839e3382b27c 264 PIRSF PIRSF005902 1 260 1.4E-86 T 13-10-2018 IPR001130 TatD family GO:0016788 CLM_3968 2f4b9e2d8c7e1d5b997bd6c97db17d96 169 Pfam PF05991 YacP-like NYN domain 4 167 1.1E-53 T 13-10-2018 IPR010298 Protein of unknown function DUF901 CLM_2281 c865103242c712abc863c69c7aeab2cc 265 SMART SM00525 236 256 3.4E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CLM_2281 c865103242c712abc863c69c7aeab2cc 265 Gene3D G3DSA:1.10.1670.10 173 259 1.8E-13 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CLM_2281 c865103242c712abc863c69c7aeab2cc 265 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 237 253 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CLM_2281 c865103242c712abc863c69c7aeab2cc 265 SUPERFAMILY SSF48150 98 255 2.36E-17 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CLM_2281 c865103242c712abc863c69c7aeab2cc 265 Gene3D G3DSA:1.10.340.30 53 172 6.2E-5 T 13-10-2018 CLM_3019 dbcf941a050b5b9a046ede83b58c1fab 69 Pfam PF06289 Flagellar protein (FlbD) 1 58 2.5E-24 T 13-10-2018 IPR009384 Swarming motility protein SwrD-like CLM_2979 483ea1f0af92e343b8ce951ad6bc388d 324 PIRSF PIRSF004532 2 323 1.3E-137 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CLM_2979 483ea1f0af92e343b8ce951ad6bc388d 324 Gene3D G3DSA:3.40.190.90 124 288 1.6E-130 T 13-10-2018 CLM_2979 483ea1f0af92e343b8ce951ad6bc388d 324 SUPERFAMILY SSF56655 3 316 3.62E-101 T 13-10-2018 CLM_2979 483ea1f0af92e343b8ce951ad6bc388d 324 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 5 314 2.0E-135 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CLM_2979 483ea1f0af92e343b8ce951ad6bc388d 324 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 3 320 5.3E-114 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CLM_2979 483ea1f0af92e343b8ce951ad6bc388d 324 Gene3D G3DSA:3.30.540.10 6 314 1.6E-130 T 13-10-2018 CLM_1528 f9acec5bf29be6424d7611d5cb04a2ef 90 Pfam PF07870 Protein of unknown function (DUF1657) 8 55 8.8E-18 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 CLM_1899 5a0b07614c31af56ab47a94de4bc050c 184 Gene3D G3DSA:1.20.120.520 2 183 2.9E-26 T 13-10-2018 CLM_1899 5a0b07614c31af56ab47a94de4bc050c 184 Pfam PF01814 Hemerythrin HHE cation binding domain 3 139 1.0E-14 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CLM_1038 21777ada1ad813f067128aed647ffd61 222 TIGRFAM TIGR02271 TIGR02271: conserved domain 95 208 1.2E-30 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_1038 21777ada1ad813f067128aed647ffd61 222 Pfam PF09557 Domain of unknown function (DUF2382) 95 200 4.4E-26 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 CLM_2107 ba3ec3a5dc47c07ad6b3c617f5469c45 196 TIGRFAM TIGR02896 spore_III_AF: stage III sporulation protein AF 3 108 3.3E-38 T 13-10-2018 IPR014245 Sporulation stage III, protein AF CLM_2107 ba3ec3a5dc47c07ad6b3c617f5469c45 196 Pfam PF09581 Stage III sporulation protein AF (Spore_III_AF) 14 193 5.5E-39 T 13-10-2018 IPR014245 Sporulation stage III, protein AF CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 186 215 6.3E-10 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 118 151 8.6E-9 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 254 288 3.8E-9 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 288 316 2.3E-8 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 85 118 4.0E-11 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 50 83 1.9E-10 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 220 254 5.3E-10 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 16 48 0.001 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 Pfam PF14903 WG containing repeat 153 186 5.8E-12 T 13-10-2018 IPR032774 WG containing repeat CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 SUPERFAMILY SSF69360 5 103 3.77E-6 T 13-10-2018 CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 SUPERFAMILY SSF69360 217 331 2.59E-9 T 13-10-2018 CLM_1906 40513404c0798ca11b2d34de0a9ab307 337 SUPERFAMILY SSF69360 81 202 3.34E-14 T 13-10-2018 CLM_3572 26d41a42a93b6c3c23040b4bcc7d3432 175 Pfam PF14277 Domain of unknown function (DUF4364) 11 169 3.6E-47 T 13-10-2018 IPR025374 Protein of unknown function DUF4364 CLM_3572 26d41a42a93b6c3c23040b4bcc7d3432 175 Gene3D G3DSA:1.10.10.10 13 107 5.9E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_2476 f1056ab7c5a00a7ab8156dfd2742925f 89 Pfam PF07659 Domain of Unknown Function (DUF1599) 22 85 8.3E-19 T 13-10-2018 IPR011630 Clostridium phage phiCTP1, Gp74 CLM_2404 347fe095282463c001eafa2e9edf7526 383 SMART SM00283 176 383 6.5E-5 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2404 347fe095282463c001eafa2e9edf7526 383 SUPERFAMILY SSF58104 219 381 1.83E-41 T 13-10-2018 CLM_2404 347fe095282463c001eafa2e9edf7526 383 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 247 379 1.9E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CLM_2404 347fe095282463c001eafa2e9edf7526 383 Gene3D G3DSA:1.10.287.950 214 383 3.6E-38 T 13-10-2018 CLM_0783 566366bfdfccea5ead57fb5b1eb371c4 323 Pfam PF04392 ABC transporter substrate binding protein 32 308 1.2E-82 T 13-10-2018 IPR007487 ABC transporter, substrate-binding protein CLM_0783 566366bfdfccea5ead57fb5b1eb371c4 323 Gene3D G3DSA:3.40.50.2300 145 308 3.9E-87 T 13-10-2018 CLM_0783 566366bfdfccea5ead57fb5b1eb371c4 323 SUPERFAMILY SSF53822 40 286 2.63E-11 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CLM_0783 566366bfdfccea5ead57fb5b1eb371c4 323 Gene3D G3DSA:3.40.50.2300 42 292 3.9E-87 T 13-10-2018 CLM_2759 55252598a30f4738ef969a0ef7dc7370 704 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 256 595 3.1E-20 T 13-10-2018 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 CLM_2759 55252598a30f4738ef969a0ef7dc7370 704 TIGRFAM TIGR04480 D_pro_red_PrdA: D-proline reductase (dithiol), PrdA proprotein 103 674 2.4E-265 T 13-10-2018 IPR031002 D-proline reductase, PrdA proprotein GO:0050002|GO:0055114 KEGG: 00330+1.21.4.1 CLM_3762 e9cb1b1de8fdb9c88e39535e5900602e 187 Pfam PF07155 ECF-type riboflavin transporter, S component 11 179 1.5E-49 T 13-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 CLM_3762 e9cb1b1de8fdb9c88e39535e5900602e 187 Gene3D G3DSA:1.10.1760.20 8 182 1.3E-46 T 13-10-2018 CLM_2044 8292004837f5c0d3328cc4b006d0f10c 385 Pfam PF14594 Siphovirus ReqiPepy6 Gp37-like protein 10 370 1.9E-98 T 13-10-2018 IPR029432 Siphovirus Gp37-like protein CLM_2671 39a6e946cf7bbbd08928115a6e29939d 341 Pfam PF04245 37-kD nucleoid-associated bacterial protein 13 339 3.9E-62 T 13-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 CLM_1860 1be4ab76e2d941e6ca02250133d78a64 59 Pfam PF12841 YvrJ protein family 8 42 2.4E-16 T 13-10-2018 IPR024419 Protein of unknown function YvrJ CLM_1385 b6cf7be4ef6eb6a9befb34178b9fbf00 90 Pfam PF12652 CotJB protein 9 84 1.2E-26 T 13-10-2018 IPR024207 Spore coat assembly protein CotJB, domain CLM_1385 b6cf7be4ef6eb6a9befb34178b9fbf00 90 PIRSF PIRSF010606 2 85 1.1E-23 T 13-10-2018 IPR016571 Spore coat assembly protein CotJB CLM_0344 c9aac54e4ab02886e9083f9e81fa39ba 212 SUPERFAMILY SSF51735 1 210 3.53E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_0344 c9aac54e4ab02886e9083f9e81fa39ba 212 Gene3D G3DSA:3.40.50.720 1 211 1.4E-49 T 13-10-2018 CLM_0344 c9aac54e4ab02886e9083f9e81fa39ba 212 Pfam PF13460 NAD(P)H-binding 7 200 1.4E-29 T 13-10-2018 IPR016040 NAD(P)-binding domain CLM_3090 21ae5bbedf281843055a5b374588cb18 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 343 2.4E-59 T 13-10-2018 IPR016040 NAD(P)-binding domain CLM_3090 21ae5bbedf281843055a5b374588cb18 354 Gene3D G3DSA:3.40.50.720 4 334 2.8E-88 T 13-10-2018 CLM_3090 21ae5bbedf281843055a5b374588cb18 354 Gene3D G3DSA:3.90.25.10 213 346 2.8E-88 T 13-10-2018 CLM_3090 21ae5bbedf281843055a5b374588cb18 354 SUPERFAMILY SSF51735 1 352 1.77E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 62 118 8.0E-17 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 3 52 1.7E-9 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 SMART SM00529 23 119 1.1E-22 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 SUPERFAMILY SSF46785 1 61 1.96E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 Gene3D G3DSA:1.10.60.10 67 119 4.4E-21 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 SUPERFAMILY SSF47979 62 118 1.7E-16 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 CLM_1775 86ef1090ff8bad1fc3c3ce317173fe0c 119 Gene3D G3DSA:1.10.10.10 2 66 8.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_0242 a39b4374f487581e9d738584d67bf6bb 308 SUPERFAMILY SSF51569 1 304 5.57E-104 T 13-10-2018 CLM_0242 a39b4374f487581e9d738584d67bf6bb 308 PIRSF PIRSF001359 1 307 7.4E-100 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_0242 a39b4374f487581e9d738584d67bf6bb 308 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 305 4.2E-101 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_0242 a39b4374f487581e9d738584d67bf6bb 308 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 305 7.0E-107 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CLM_0242 a39b4374f487581e9d738584d67bf6bb 308 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 300 3.5E-88 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CLM_0242 a39b4374f487581e9d738584d67bf6bb 308 Gene3D G3DSA:3.20.20.70 1 308 3.4E-123 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_0895 05ca7554f27527c35b741b063a067966 416 Pfam PF06597 Clostridium P-47 protein 3 377 6.6E-30 T 13-10-2018 IPR010567 Clostridium P47 protein CLM_2921 adf399c6f6b6470a384fc19dccd8e62d 385 Pfam PF14594 Siphovirus ReqiPepy6 Gp37-like protein 10 370 2.1E-98 T 13-10-2018 IPR029432 Siphovirus Gp37-like protein CLM_1226 713c83841cbd7bf045864bcfa12c6718 111 SUPERFAMILY SSF52833 2 111 4.8E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_1226 713c83841cbd7bf045864bcfa12c6718 111 Gene3D G3DSA:3.40.30.10 1 111 1.8E-24 T 13-10-2018 CLM_1226 713c83841cbd7bf045864bcfa12c6718 111 Pfam PF03960 ArsC family 44 110 7.8E-9 T 13-10-2018 IPR006660 Arsenate reductase-like CLM_1675 b67f03f3cfafaedba69847c4876632e7 369 Pfam PF04865 Baseplate J-like protein 63 321 4.1E-48 T 13-10-2018 IPR006949 Baseplate protein J-like CLM_2316 99ea2942ffb53d20b22355127dde82af 532 Pfam PF00171 Aldehyde dehydrogenase family 22 274 1.3E-22 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CLM_2316 99ea2942ffb53d20b22355127dde82af 532 SUPERFAMILY SSF53720 11 448 2.49E-80 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CLM_2316 99ea2942ffb53d20b22355127dde82af 532 TIGRFAM TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating) 5 529 7.4E-252 T 13-10-2018 IPR013357 Acetaldehyde dehydrogenase, acetylating CLM_2316 99ea2942ffb53d20b22355127dde82af 532 Gene3D G3DSA:3.40.309.10 223 405 1.0E-175 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CLM_2316 99ea2942ffb53d20b22355127dde82af 532 Gene3D G3DSA:3.40.605.10 15 443 1.0E-175 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CLM_3203 fc82ec58ab7bf821a52d4d69b004a1b2 456 Pfam PF01554 MatE 244 404 1.5E-17 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3203 fc82ec58ab7bf821a52d4d69b004a1b2 456 Pfam PF01554 MatE 23 184 1.6E-27 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3203 fc82ec58ab7bf821a52d4d69b004a1b2 456 PIRSF PIRSF006603 1 452 1.0E-88 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3203 fc82ec58ab7bf821a52d4d69b004a1b2 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 416 1.3E-57 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1490 b537a3709edc2f36040b746f3f46626b 124 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 18 118 4.2E-17 T 13-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV CLM_1565 d261941089ddcce22683ebcd9d950343 212 Gene3D G3DSA:3.30.1060.10 3 212 5.1E-59 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_1565 d261941089ddcce22683ebcd9d950343 212 Pfam PF01625 Peptide methionine sulfoxide reductase 9 143 9.1E-32 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_1565 d261941089ddcce22683ebcd9d950343 212 SUPERFAMILY SSF55068 5 143 4.97E-43 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CLM_0964 b159cf8f1c0d167fdae2571c7f6140d7 261 Gene3D G3DSA:3.30.1330.10 2 127 2.7E-5 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 Pfam PF01235 Sodium:alanine symporter family 57 446 1.2E-145 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 PRINTS PR00175 Sodium/alanine symporter signature 94 116 1.3E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 PRINTS PR00175 Sodium/alanine symporter signature 212 231 1.3E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 PRINTS PR00175 Sodium/alanine symporter signature 351 373 1.3E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 PRINTS PR00175 Sodium/alanine symporter signature 184 202 1.3E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 PRINTS PR00175 Sodium/alanine symporter signature 410 430 1.3E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 PRINTS PR00175 Sodium/alanine symporter signature 307 325 1.3E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 TIGRFAM TIGR00835 agcS: amino acid carrier protein 15 441 1.9E-147 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1454 c55c1dd03b9ace3355e8cffb719bb5a4 450 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 94 109 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_2930 7d23623e5c6b3ee9354dafa2fc49f291 97 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 4 90 3.3E-12 T 13-10-2018 IPR006450 Phage protein of unkonwn function CLM_2930 7d23623e5c6b3ee9354dafa2fc49f291 97 Pfam PF05135 Phage gp6-like head-tail connector protein 3 69 6.0E-11 T 13-10-2018 IPR021146 Phage gp6-like head-tail connector protein CLM_1734 f11efa6dd6441f1b1f001012cd1f46de 356 Gene3D G3DSA:3.20.20.210 2 346 1.2E-81 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1734 f11efa6dd6441f1b1f001012cd1f46de 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 9 346 2.2E-72 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CLM_1734 f11efa6dd6441f1b1f001012cd1f46de 356 SUPERFAMILY SSF51726 7 348 2.09E-58 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_1687 a496ca24b205e54b91df2b21009a4329 162 Pfam PF04389 Peptidase family M28 1 145 2.4E-9 T 13-10-2018 IPR007484 Peptidase M28 CLM_1687 a496ca24b205e54b91df2b21009a4329 162 SUPERFAMILY SSF53187 23 149 5.45E-10 T 13-10-2018 CLM_1687 a496ca24b205e54b91df2b21009a4329 162 Gene3D G3DSA:3.40.630.10 1 159 8.7E-13 T 13-10-2018 CLM_0458 ce551198ddc1dd802a7252e142f4ca5c 156 SUPERFAMILY SSF56784 13 117 7.78E-13 T 13-10-2018 IPR036412 HAD-like superfamily CLM_0458 ce551198ddc1dd802a7252e142f4ca5c 156 Gene3D G3DSA:3.40.50.1000 11 146 1.2E-13 T 13-10-2018 IPR023214 HAD superfamily CLM_0458 ce551198ddc1dd802a7252e142f4ca5c 156 Pfam PF08282 haloacid dehalogenase-like hydrolase 31 116 2.6E-6 T 13-10-2018 CLM_2598 2ae96c37ac0d49134ea37072443f647a 78 Pfam PF01381 Helix-turn-helix 5 52 1.6E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2598 2ae96c37ac0d49134ea37072443f647a 78 SUPERFAMILY SSF47413 3 66 1.26E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2598 2ae96c37ac0d49134ea37072443f647a 78 Gene3D G3DSA:1.10.260.40 1 65 1.2E-23 T 13-10-2018 CLM_2598 2ae96c37ac0d49134ea37072443f647a 78 SMART SM00530 4 59 3.8E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2515 bd746a35254268d092573bdf52a4a168 136 SUPERFAMILY SSF69279 5 133 3.57E-40 T 13-10-2018 CLM_2515 bd746a35254268d092573bdf52a4a168 136 Gene3D G3DSA:2.30.110.40 1 131 4.4E-35 T 13-10-2018 IPR038628 XkdM-like superfamily CLM_2515 bd746a35254268d092573bdf52a4a168 136 Pfam PF09393 Phage tail tube protein 2 131 5.6E-44 T 13-10-2018 IPR018989 Phage tail tube protein CLM_0162 c09f5b87da5a05b12a4fc9a9a8de9fe0 266 Gene3D G3DSA:3.40.50.880 4 265 1.5E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0162 c09f5b87da5a05b12a4fc9a9a8de9fe0 266 SUPERFAMILY SSF52317 9 223 3.2E-23 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_0162 c09f5b87da5a05b12a4fc9a9a8de9fe0 266 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 9 258 2.6E-106 T 13-10-2018 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 CLM_0162 c09f5b87da5a05b12a4fc9a9a8de9fe0 266 Pfam PF03575 Peptidase family S51 9 209 9.9E-24 T 13-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 CLM_0162 c09f5b87da5a05b12a4fc9a9a8de9fe0 266 PIRSF PIRSF032067 2 264 3.3E-65 T 13-10-2018 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 CLM_2776 523a8b114fbdc2a55113ab9b49d7409b 702 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 253 593 3.3E-26 T 13-10-2018 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 CLM_2776 523a8b114fbdc2a55113ab9b49d7409b 702 TIGRFAM TIGR04480 D_pro_red_PrdA: D-proline reductase (dithiol), PrdA proprotein 96 672 1.3E-266 T 13-10-2018 IPR031002 D-proline reductase, PrdA proprotein GO:0050002|GO:0055114 KEGG: 00330+1.21.4.1 CLM_0415 f5afd2672bfab95fb7874112e41b5fea 196 Pfam PF12672 Protein of unknown function (DUF3793) 27 191 9.6E-40 T 13-10-2018 IPR024523 Protein of unknown function DUF3793 CLM_4021 462a4695abf7c2e85401931f848cf60f 134 Gene3D G3DSA:2.40.50.140 2 83 1.1E-28 T 13-10-2018 CLM_4021 462a4695abf7c2e85401931f848cf60f 134 SUPERFAMILY SSF50249 4 82 1.93E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_4021 462a4695abf7c2e85401931f848cf60f 134 Pfam PF00575 S1 RNA binding domain 3 73 6.2E-20 T 13-10-2018 IPR003029 S1 domain GO:0003676 CLM_4021 462a4695abf7c2e85401931f848cf60f 134 SMART SM00316 4 73 2.9E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CLM_2439 987e0eece0438ff52384a5819741ef79 342 Gene3D G3DSA:3.40.640.10 13 250 1.9E-107 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_2439 987e0eece0438ff52384a5819741ef79 342 Gene3D G3DSA:3.90.1150.10 6 330 1.9E-107 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_2439 987e0eece0438ff52384a5819741ef79 342 SUPERFAMILY SSF53383 1 340 5.23E-72 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_2439 987e0eece0438ff52384a5819741ef79 342 Pfam PF01212 Beta-eliminating lyase 15 287 1.8E-34 T 13-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 CLM_1501 dc0168b0dcd551cd2c850e5fe2051073 486 Gene3D G3DSA:3.40.50.12090 169 258 8.6E-8 T 13-10-2018 CLM_1501 dc0168b0dcd551cd2c850e5fe2051073 486 Gene3D G3DSA:3.40.50.12090 53 153 2.0E-5 T 13-10-2018 CLM_1501 dc0168b0dcd551cd2c850e5fe2051073 486 Pfam PF16800 IseA DL-endopeptidase inhibitor 332 482 9.9E-44 T 13-10-2018 IPR031841 DL-endopeptidase inhibitor IseA CLM_1501 dc0168b0dcd551cd2c850e5fe2051073 486 Pfam PF04122 Putative cell wall binding repeat 2 135 222 3.1E-13 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_1501 dc0168b0dcd551cd2c850e5fe2051073 486 Pfam PF04122 Putative cell wall binding repeat 2 240 323 4.9E-19 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_1501 dc0168b0dcd551cd2c850e5fe2051073 486 Pfam PF04122 Putative cell wall binding repeat 2 31 118 1.1E-20 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0245 f172716b8e848cee420ffba55810a824 552 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 291 486 7.1E-17 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 CLM_0245 f172716b8e848cee420ffba55810a824 552 SUPERFAMILY SSF55186 69 236 1.06E-34 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CLM_0245 f172716b8e848cee420ffba55810a824 552 Gene3D G3DSA:3.40.50.300 220 493 1.6E-61 T 13-10-2018 CLM_0245 f172716b8e848cee420ffba55810a824 552 Gene3D G3DSA:3.30.980.10 67 203 4.7E-22 T 13-10-2018 CLM_0245 f172716b8e848cee420ffba55810a824 552 SUPERFAMILY SSF52540 284 484 1.85E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3666 249edc3fc5767509814064772561dee6 188 SUPERFAMILY SSF160387 110 188 2.17E-20 T 13-10-2018 CLM_3666 249edc3fc5767509814064772561dee6 188 Pfam PF03243 Alkylmercury lyase 106 187 1.4E-14 T 13-10-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 CLM_3666 249edc3fc5767509814064772561dee6 188 Gene3D G3DSA:2.40.10.490 20 188 1.7E-32 T 13-10-2018 CLM_2191 05cc3d494b55647f9704b965f88fed47 355 Pfam PF01168 Alanine racemase, N-terminal domain 10 223 9.7E-19 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CLM_2191 05cc3d494b55647f9704b965f88fed47 355 SUPERFAMILY SSF51419 10 228 1.23E-25 T 13-10-2018 IPR029066 PLP-binding barrel CLM_2191 05cc3d494b55647f9704b965f88fed47 355 Gene3D G3DSA:3.20.20.10 12 223 2.8E-24 T 13-10-2018 IPR029066 PLP-binding barrel CLM_3698 2a48f39df8ef5b8ae15512fd33f0e547 520 Gene3D G3DSA:3.10.105.10 285 489 4.5E-73 T 13-10-2018 CLM_3698 2a48f39df8ef5b8ae15512fd33f0e547 520 Gene3D G3DSA:3.90.76.10 66 187 4.5E-73 T 13-10-2018 CLM_3698 2a48f39df8ef5b8ae15512fd33f0e547 520 Gene3D G3DSA:3.40.190.10 54 500 4.5E-73 T 13-10-2018 CLM_3698 2a48f39df8ef5b8ae15512fd33f0e547 520 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 446 4.1E-51 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CLM_3698 2a48f39df8ef5b8ae15512fd33f0e547 520 SUPERFAMILY SSF53850 36 516 4.52E-68 T 13-10-2018 CLM_3698 2a48f39df8ef5b8ae15512fd33f0e547 520 PIRSF PIRSF002741 1 516 1.1E-55 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CLM_1062 f02e80588075307cf164cd6e9415e4cd 323 Pfam PF03186 CobD/Cbib protein 12 302 3.9E-99 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CLM_1062 f02e80588075307cf164cd6e9415e4cd 323 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 12 303 4.4E-71 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CLM_1062 f02e80588075307cf164cd6e9415e4cd 323 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 323 89.22 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CLM_1005 dc17a0aaba25bcf0cd21307f04e76a78 151 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 147 1.4E-36 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 PRINTS PR00721 Stomatin signature 128 151 9.4E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 PRINTS PR00721 Stomatin signature 108 125 9.4E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 PRINTS PR00721 Stomatin signature 73 94 9.4E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 PRINTS PR00721 Stomatin signature 152 170 9.4E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 PRINTS PR00721 Stomatin signature 171 192 9.4E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 Pfam PF01145 SPFH domain / Band 7 family 22 193 1.0E-39 T 13-10-2018 IPR001107 Band 7 domain CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 Gene3D G3DSA:3.30.479.30 46 178 1.2E-41 T 13-10-2018 CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 SUPERFAMILY SSF117892 49 183 1.11E-40 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CLM_0641 ff5f11443e8c2d87086126ae6367500d 312 SMART SM00244 18 176 6.9E-52 T 13-10-2018 IPR001107 Band 7 domain CLM_3708 949f8220ad1d21a4efb24d35d7292900 238 Pfam PF01464 Transglycosylase SLT domain 115 208 6.8E-28 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CLM_3708 949f8220ad1d21a4efb24d35d7292900 238 Gene3D G3DSA:1.10.530.10 109 238 9.2E-44 T 13-10-2018 CLM_3708 949f8220ad1d21a4efb24d35d7292900 238 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 132 160 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CLM_3708 949f8220ad1d21a4efb24d35d7292900 238 SUPERFAMILY SSF53955 112 236 9.48E-43 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CLM_0995 01bfab40a80976eed4a353398e75bbfb 275 Pfam PF00376 MerR family regulatory protein 6 43 3.3E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0995 01bfab40a80976eed4a353398e75bbfb 275 Gene3D G3DSA:1.10.1660.10 3 141 2.2E-24 T 13-10-2018 CLM_0995 01bfab40a80976eed4a353398e75bbfb 275 SMART SM00422 5 74 4.1E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0995 01bfab40a80976eed4a353398e75bbfb 275 SUPERFAMILY SSF46955 5 112 8.42E-23 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_2669 0fc52e84765b1fd9d8c013bc898f541e 62 Gene3D G3DSA:3.40.1350.10 1 62 1.1E-20 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CLM_1849 a65311c92f8e7061a54f5105d5e518ef 207 Pfam PF02659 Putative manganese efflux pump 50 203 3.8E-12 T 13-10-2018 IPR003810 Putative manganese efflux pump CLM_1849 a65311c92f8e7061a54f5105d5e518ef 207 TIGRFAM TIGR02840 spore_YtaF: putative sporulation protein YtaF 3 206 1.1E-68 T 13-10-2018 IPR014205 Sporulation protein YtaF CLM_3290 cf94819c86519ba619db72a4e79602b4 181 Gene3D G3DSA:3.40.50.300 2 166 3.1E-30 T 13-10-2018 CLM_3290 cf94819c86519ba619db72a4e79602b4 181 Pfam PF03266 NTPase 3 162 1.0E-40 T 13-10-2018 IPR004948 Nucleoside-triphosphatase, THEP1 type GO:0098519 KEGG: 00230+3.6.1.15|KEGG: 00730+3.6.1.15|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210 CLM_3290 cf94819c86519ba619db72a4e79602b4 181 SUPERFAMILY SSF52540 3 168 3.48E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3297 c337dc26311e569190f41fd4c1513543 480 Pfam PF00860 Permease family 34 439 4.9E-40 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_3297 c337dc26311e569190f41fd4c1513543 480 PIRSF PIRSF005353 8 480 3.7E-197 T 13-10-2018 IPR026033 Purine permease PbuG-like CLM_1199 15b4d566844360154ce4a5114ea62ece 228 Gene3D G3DSA:1.25.10.90 1 223 6.3E-18 T 13-10-2018 CLM_1199 15b4d566844360154ce4a5114ea62ece 228 Pfam PF08713 DNA alkylation repair enzyme 6 207 2.7E-14 T 13-10-2018 IPR014825 DNA alkylation repair enzyme CLM_1199 15b4d566844360154ce4a5114ea62ece 228 SUPERFAMILY SSF48371 9 208 1.73E-41 T 13-10-2018 IPR016024 Armadillo-type fold CLM_0983 edc5dff808fbdbeb8144886999644bea 264 Pfam PF12679 ABC-2 family transporter protein 7 217 2.2E-12 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 Gene3D G3DSA:3.30.70.660 108 244 2.1E-44 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 Pfam PF01416 tRNA pseudouridine synthase 145 246 1.1E-26 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 Pfam PF01416 tRNA pseudouridine synthase 9 105 3.4E-10 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 SUPERFAMILY SSF55120 2 246 4.46E-78 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 241 1.0E-60 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 246 34.612 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 Gene3D G3DSA:3.30.70.580 1 107 7.2E-34 T 13-10-2018 CLM_3914 ce5177b4448d3e84e53620905e1f1b03 246 PIRSF PIRSF001430 1 246 3.9E-78 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CLM_1474 aef943ac0719e4e68d13a58a38f85dec 154 SUPERFAMILY SSF50475 1 152 1.51E-43 T 13-10-2018 CLM_1474 aef943ac0719e4e68d13a58a38f85dec 154 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 14 151 1.5E-19 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related CLM_1474 aef943ac0719e4e68d13a58a38f85dec 154 Gene3D G3DSA:2.30.110.10 2 153 1.8E-39 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 Pfam PF13545 Crp-like helix-turn-helix domain 150 221 1.8E-14 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 SMART SM00100 7 129 1.8E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 SMART SM00419 167 215 3.7E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 SUPERFAMILY SSF51206 16 143 4.84E-30 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 Gene3D G3DSA:2.60.120.1460 17 222 1.6E-50 T 13-10-2018 CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 Pfam PF00027 Cyclic nucleotide-binding domain 30 112 4.3E-18 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CLM_1512 069e631113337a48d65721bf5f5bc2fb 228 SUPERFAMILY SSF46785 147 224 2.45E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_4024 a7a9b46ce17f3d46a44dacc4264cfcb8 96 ProDom PD067726 YABP B.SUBTILIS PRECURSOR UNCHARACTERIZED BH0074 SIGNAL CPE2477 PROTEIN 15 96 2.0E-21 T 13-10-2018 IPR012504 Sporulation protein YabP CLM_4024 a7a9b46ce17f3d46a44dacc4264cfcb8 96 TIGRFAM TIGR02892 spore_yabP: sporulation protein YabP 13 96 2.8E-34 T 13-10-2018 IPR012504 Sporulation protein YabP CLM_4024 a7a9b46ce17f3d46a44dacc4264cfcb8 96 Pfam PF07873 YabP family 14 78 2.6E-19 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC CLM_4024 a7a9b46ce17f3d46a44dacc4264cfcb8 96 Gene3D G3DSA:2.60.40.2000 21 78 1.3E-20 T 13-10-2018 IPR038705 YabP superfamily CLM_4024 a7a9b46ce17f3d46a44dacc4264cfcb8 96 PIRSF PIRSF011576 1 96 2.7E-17 T 13-10-2018 IPR012504 Sporulation protein YabP CLM_1012 4068f2da50683f533cdc2df0393d1195 172 Pfam PF00881 Nitroreductase family 9 59 1.2E-11 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1012 4068f2da50683f533cdc2df0393d1195 172 Pfam PF00881 Nitroreductase family 67 146 1.8E-12 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_1012 4068f2da50683f533cdc2df0393d1195 172 Gene3D G3DSA:3.40.109.10 2 172 1.1E-48 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_1012 4068f2da50683f533cdc2df0393d1195 172 SUPERFAMILY SSF55469 1 172 1.07E-48 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_4052 ec59d0326937db7b3e5bedafacb2b486 220 Gene3D G3DSA:1.10.260.40 1 94 8.2E-15 T 13-10-2018 CLM_4052 ec59d0326937db7b3e5bedafacb2b486 220 SUPERFAMILY SSF47413 4 62 1.88E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_4052 ec59d0326937db7b3e5bedafacb2b486 220 Pfam PF01381 Helix-turn-helix 8 60 1.3E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_4052 ec59d0326937db7b3e5bedafacb2b486 220 SUPERFAMILY SSF51306 120 213 1.38E-10 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CLM_4052 ec59d0326937db7b3e5bedafacb2b486 220 SMART SM00530 7 62 1.5E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1282 462ee3bdfe584f485495c3577765e0a8 357 SUPERFAMILY SSF53383 4 355 3.19E-87 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CLM_1282 462ee3bdfe584f485495c3577765e0a8 357 Gene3D G3DSA:3.90.1150.10 5 353 1.6E-114 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CLM_1282 462ee3bdfe584f485495c3577765e0a8 357 Gene3D G3DSA:3.40.640.10 14 257 1.6E-114 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CLM_1282 462ee3bdfe584f485495c3577765e0a8 357 PIRSF PIRSF000524 1 356 7.2E-93 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 CLM_1282 462ee3bdfe584f485495c3577765e0a8 357 Pfam PF00266 Aminotransferase class-V 23 321 2.6E-30 T 13-10-2018 IPR000192 Aminotransferase class V domain CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 Gene3D G3DSA:3.40.50.140 2 163 1.7E-49 T 13-10-2018 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 SMART SM00436 135 229 5.7E-22 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 SUPERFAMILY SSF56712 3 603 1.06E-158 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 SMART SM00493 2 135 1.4E-18 T 13-10-2018 IPR006171 TOPRIM domain CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 Gene3D G3DSA:2.70.20.10 223 480 1.5E-126 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 SMART SM00437 277 553 2.9E-55 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 Pfam PF01131 DNA topoisomerase 162 589 1.4E-106 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 Pfam PF01751 Toprim domain 4 144 3.6E-17 T 13-10-2018 IPR006171 TOPRIM domain CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 109 122 1.6E-20 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 199 217 1.6E-20 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 1.6E-20 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 516 530 1.6E-20 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 1.6E-20 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 Gene3D G3DSA:1.10.290.10 286 409 1.5E-126 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLM_1742 bb5f6a44c7111e8e91b1e21ded07495b 619 Gene3D G3DSA:1.10.460.10 170 596 1.5E-126 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLM_3065 e78ce587cbabe3e80813cc15d3189a81 334 SUPERFAMILY SSF52266 6 186 7.48E-33 T 13-10-2018 CLM_3065 e78ce587cbabe3e80813cc15d3189a81 334 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 10 175 1.1E-15 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain CLM_3065 e78ce587cbabe3e80813cc15d3189a81 334 Gene3D G3DSA:3.40.50.1110 7 189 1.2E-28 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CLM_3243 5b5dea4dbadafbf18d65ede72b5c6358 61 Gene3D G3DSA:1.10.530.10 2 53 4.3E-6 T 13-10-2018 CLM_0444 079dfbc5732d0668b77686aaadfa8326 130 Pfam PF07009 NusG domain II 12 121 1.1E-33 T 13-10-2018 IPR024045 NusG, domain 2 CLM_0444 079dfbc5732d0668b77686aaadfa8326 130 Gene3D G3DSA:2.60.320.10 30 128 3.0E-31 T 13-10-2018 IPR038690 NusG, domain 2 superfamily CLM_2493 da2851b1c196fdc84f12850b656ad64a 107 Pfam PF01381 Helix-turn-helix 47 101 5.2E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2493 da2851b1c196fdc84f12850b656ad64a 107 SUPERFAMILY SSF47413 39 106 1.61E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2493 da2851b1c196fdc84f12850b656ad64a 107 Gene3D G3DSA:1.10.260.40 42 107 7.6E-13 T 13-10-2018 CLM_2493 da2851b1c196fdc84f12850b656ad64a 107 SMART SM00530 46 102 7.4E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1328 683cc38bbb41d9fdc3ee5f3ec68dbcce 269 Pfam PF02535 ZIP Zinc transporter 107 264 1.3E-16 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 CLM_1406 7fed11c0d8645e8fe8b79836e17a4bae 67 SUPERFAMILY SSF47413 1 66 3.49E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1406 7fed11c0d8645e8fe8b79836e17a4bae 67 Pfam PF01381 Helix-turn-helix 17 60 4.4E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1406 7fed11c0d8645e8fe8b79836e17a4bae 67 Gene3D G3DSA:1.10.260.40 1 67 1.7E-12 T 13-10-2018 CLM_1406 7fed11c0d8645e8fe8b79836e17a4bae 67 SMART SM00530 6 62 4.1E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_0982 bf7f7e06219b6fa451ee69cad38d9b70 164 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 15 152 2.4E-21 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related CLM_0982 bf7f7e06219b6fa451ee69cad38d9b70 164 SUPERFAMILY SSF50475 1 155 9.35E-47 T 13-10-2018 CLM_0982 bf7f7e06219b6fa451ee69cad38d9b70 164 Gene3D G3DSA:2.30.110.10 2 154 1.6E-37 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_3388 8a6082a365b1a72cc6d4d009cb568488 616 SUPERFAMILY SSF102114 222 601 2.09E-47 T 13-10-2018 CLM_3388 8a6082a365b1a72cc6d4d009cb568488 616 SMART SM00729 256 478 7.3E-34 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CLM_3388 8a6082a365b1a72cc6d4d009cb568488 616 TIGRFAM TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein 6 609 0.0 T 13-10-2018 IPR023862 Conserved hypothetical protein CHP03960, radical SAM CLM_3388 8a6082a365b1a72cc6d4d009cb568488 616 Pfam PF04055 Radical SAM superfamily 261 423 1.4E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_3388 8a6082a365b1a72cc6d4d009cb568488 616 Gene3D G3DSA:3.80.30.20 255 475 9.5E-20 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CLM_3499 993d0e33ce65e8bd6e6aad88d043f88d 217 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 5 216 2.3E-90 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase CLM_3499 993d0e33ce65e8bd6e6aad88d043f88d 217 Pfam PF02397 Bacterial sugar transferase 24 211 1.8E-68 T 13-10-2018 IPR003362 Bacterial sugar transferase CLM_3072 d744134059ab53a8684464b3244f71ef 595 SUPERFAMILY SSF53756 153 591 9.42E-22 T 13-10-2018 CLM_1587 d898ade0db517b4c7cfdc0b8bec225a2 493 Gene3D G3DSA:3.20.140.10 17 480 1.4E-201 T 13-10-2018 CLM_1587 d898ade0db517b4c7cfdc0b8bec225a2 493 SUPERFAMILY SSF54675 12 145 2.5E-48 T 13-10-2018 CLM_1587 d898ade0db517b4c7cfdc0b8bec225a2 493 PIRSF PIRSF000484 8 490 4.0E-167 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CLM_1587 d898ade0db517b4c7cfdc0b8bec225a2 493 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 17 476 3.4E-167 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 CLM_1587 d898ade0db517b4c7cfdc0b8bec225a2 493 SUPERFAMILY SSF51690 146 488 1.03E-126 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CLM_1587 d898ade0db517b4c7cfdc0b8bec225a2 493 Gene3D G3DSA:3.20.20.70 158 328 1.4E-201 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_3569 ab99cf26058edfdaf00fcd66d5653c77 233 Gene3D G3DSA:2.40.50.140 1 100 1.0E-20 T 13-10-2018 CLM_3569 ab99cf26058edfdaf00fcd66d5653c77 233 Gene3D G3DSA:2.40.50.140 101 203 1.2E-23 T 13-10-2018 CLM_3569 ab99cf26058edfdaf00fcd66d5653c77 233 Pfam PF00436 Single-strand binding protein family 108 196 6.1E-16 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CLM_3569 ab99cf26058edfdaf00fcd66d5653c77 233 Pfam PF00436 Single-strand binding protein family 9 98 9.7E-5 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CLM_3569 ab99cf26058edfdaf00fcd66d5653c77 233 SUPERFAMILY SSF50249 9 205 2.57E-40 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CLM_3218 e13002de105088d75d1526fb39dd6d1e 238 SMART SM00882 4 217 1.0E-64 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 CLM_3218 e13002de105088d75d1526fb39dd6d1e 238 SUPERFAMILY SSF100950 3 233 4.72E-73 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_3218 e13002de105088d75d1526fb39dd6d1e 238 Gene3D G3DSA:3.40.1080.10 1 219 8.6E-76 T 13-10-2018 CLM_3218 e13002de105088d75d1526fb39dd6d1e 238 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 216 3.2E-58 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 CLM_3218 e13002de105088d75d1526fb39dd6d1e 238 Pfam PF01144 Coenzyme A transferase 5 216 2.2E-57 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 CLM_2416 b577e89ee070ed960af60043b3c96d7a 175 Pfam PF03358 NADPH-dependent FMN reductase 33 91 1.8E-5 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CLM_2416 b577e89ee070ed960af60043b3c96d7a 175 SUPERFAMILY SSF52218 32 95 6.58E-11 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_2416 b577e89ee070ed960af60043b3c96d7a 175 Gene3D G3DSA:3.40.50.360 6 170 5.4E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 43 56 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 Gene3D G3DSA:3.40.50.1100 51 147 8.6E-124 T 13-10-2018 CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 22 400 3.4E-146 T 13-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 Gene3D G3DSA:3.40.50.1100 8 309 8.6E-124 T 13-10-2018 CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 SUPERFAMILY SSF55021 327 399 1.14E-5 T 13-10-2018 CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 304 4.1E-84 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CLM_3973 96bcdc8e42dd5fdc33cdbf721c6c20fb 405 SUPERFAMILY SSF53686 5 314 5.24E-104 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLM_1616 532700fb1db5668dccf5c1613979fb93 120 Pfam PF01381 Helix-turn-helix 7 60 2.4E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1616 532700fb1db5668dccf5c1613979fb93 120 Gene3D G3DSA:1.10.260.40 4 111 2.0E-16 T 13-10-2018 CLM_1616 532700fb1db5668dccf5c1613979fb93 120 SUPERFAMILY SSF47413 2 64 3.22E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_1616 532700fb1db5668dccf5c1613979fb93 120 SMART SM00530 6 60 9.0E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 PRINTS PR00175 Sodium/alanine symporter signature 94 116 9.5E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 PRINTS PR00175 Sodium/alanine symporter signature 351 373 9.5E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 PRINTS PR00175 Sodium/alanine symporter signature 212 231 9.5E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 PRINTS PR00175 Sodium/alanine symporter signature 410 430 9.5E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 PRINTS PR00175 Sodium/alanine symporter signature 307 325 9.5E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 PRINTS PR00175 Sodium/alanine symporter signature 184 202 9.5E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 94 109 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 TIGRFAM TIGR00835 agcS: amino acid carrier protein 15 441 1.7E-147 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3299 3cda73fbdc97c5628ebd85ac66aac5a0 450 Pfam PF01235 Sodium:alanine symporter family 56 446 5.6E-146 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_0583 395f7c3fac05ba7cf8e82e494ded0a24 363 Gene3D G3DSA:3.30.565.10 245 363 6.3E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_0583 395f7c3fac05ba7cf8e82e494ded0a24 363 Pfam PF07730 Histidine kinase 174 239 8.6E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CLM_0583 395f7c3fac05ba7cf8e82e494ded0a24 363 SUPERFAMILY SSF55874 254 362 1.01E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1399 3a7e37298ac66bf1bb49c469e7784c77 75 Pfam PF13783 Domain of unknown function (DUF4177) 4 68 4.2E-8 T 13-10-2018 IPR025234 Protein of unknown function DUF4177 CLM_1266 8361da928573668c029d9417751bf697 290 Gene3D G3DSA:1.10.3720.10 8 281 3.3E-46 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1266 8361da928573668c029d9417751bf697 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 275 5.4E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1266 8361da928573668c029d9417751bf697 290 SUPERFAMILY SSF161098 6 277 2.71E-42 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2168 30c4468ddd1fa1ebad60b5eee14af592 487 Pfam PF02687 FtsX-like permease family 347 479 6.6E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1907 45277c1b3982a93b5f9da9f486113eb6 183 Gene3D G3DSA:3.90.1720.10 8 169 2.2E-7 T 13-10-2018 CLM_1907 45277c1b3982a93b5f9da9f486113eb6 183 SUPERFAMILY SSF54001 9 169 1.18E-6 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_1218 99eeb37137492a94ddabbb3b8dd50d8a 121 Gene3D G3DSA:1.10.10.10 12 120 9.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1218 99eeb37137492a94ddabbb3b8dd50d8a 121 SUPERFAMILY SSF46785 15 119 1.46E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1218 99eeb37137492a94ddabbb3b8dd50d8a 121 Pfam PF03551 Transcriptional regulator PadR-like family 27 98 1.7E-20 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal CLM_0597 df3207e9ea9b86fdd1f124241fcd0273 314 Pfam PF12146 Serine aminopeptidase, S33 28 292 2.6E-62 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CLM_0597 df3207e9ea9b86fdd1f124241fcd0273 314 SUPERFAMILY SSF53474 6 307 2.68E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0597 df3207e9ea9b86fdd1f124241fcd0273 314 Gene3D G3DSA:3.40.50.1820 1 312 6.3E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_3713 58947a58f13e69c9eab0ac947323c31f 56 Pfam PF13451 Probable zinc-ribbon domain 3 49 7.6E-26 T 13-10-2018 IPR025306 Probable zinc-binding domain CLM_1670 ac63b2d08ced607a6e8fa3c5b913c033 876 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 85 365 2.6E-34 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_1670 ac63b2d08ced607a6e8fa3c5b913c033 876 SUPERFAMILY SSF48371 411 756 1.44E-8 T 13-10-2018 IPR016024 Armadillo-type fold CLM_1670 ac63b2d08ced607a6e8fa3c5b913c033 876 Pfam PF10145 Phage-related minor tail protein 110 301 1.5E-33 T 13-10-2018 IPR010090 Phage tail tape measure protein CLM_4028 0118434afaee472813da8af121acdbbf 511 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 354 497 8.2E-26 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLM_4028 0118434afaee472813da8af121acdbbf 511 Pfam PF01943 Polysaccharide biosynthesis protein 6 301 5.1E-37 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CLM_4028 0118434afaee472813da8af121acdbbf 511 PIRSF PIRSF038958 1 511 6.6E-155 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLM_2388 013221a620a24548fc3f446657c795f9 447 Pfam PF00860 Permease family 22 397 5.8E-74 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_2112 aa13f04bc6cef8a4649aeeaa14b8e5c3 307 SUPERFAMILY SSF52540 33 265 2.14E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2112 aa13f04bc6cef8a4649aeeaa14b8e5c3 307 Gene3D G3DSA:3.40.50.300 125 282 4.4E-21 T 13-10-2018 CLM_2112 aa13f04bc6cef8a4649aeeaa14b8e5c3 307 TIGRFAM TIGR02858 spore_III_AA: stage III sporulation protein AA 28 295 8.6E-122 T 13-10-2018 IPR014217 Sporulation stage III, protein AA CLM_0171 2f1aefe78d2c99551cb9e7c6c395bd85 456 Pfam PF03413 Peptidase propeptide and YPEB domain 383 438 1.6E-4 T 13-10-2018 IPR025711 PepSY domain CLM_0171 2f1aefe78d2c99551cb9e7c6c395bd85 456 Pfam PF14620 YpeB sporulation 17 378 4.4E-128 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 CLM_0171 2f1aefe78d2c99551cb9e7c6c395bd85 456 TIGRFAM TIGR02889 spore_YpeB: germination protein YpeB 7 446 1.0E-158 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 CLM_1396 7ca75f239b45d3f68ef16331ad7db0f4 349 Pfam PF13303 Phosphotransferase system, EIIC 28 332 5.7E-57 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_0858 cfbf5b9ea7a33c55aad415b19797c70e 96 Pfam PF08765 Mor transcription activator family 19 94 4.3E-6 T 13-10-2018 IPR014875 Mor transcription activator CLM_0858 cfbf5b9ea7a33c55aad415b19797c70e 96 SUPERFAMILY SSF46689 4 94 5.64E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_1220 b59e1dafc82680b2b4e117d8d31fe7cd 233 Pfam PF02517 CAAX protease self-immunity 121 220 5.2E-14 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_1134 eb72e87f32f3e293eea422fa741b7998 154 Gene3D G3DSA:3.40.630.30 1 153 4.4E-38 T 13-10-2018 CLM_1134 eb72e87f32f3e293eea422fa741b7998 154 SUPERFAMILY SSF55729 1 153 5.06E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1134 eb72e87f32f3e293eea422fa741b7998 154 Pfam PF13673 Acetyltransferase (GNAT) domain 28 143 3.4E-21 T 13-10-2018 IPR000182 GNAT domain CLM_0193 44b4f758e12d432226cde8ea421140b5 122 Pfam PF03899 ATP synthase I chain 11 104 2.6E-11 T 13-10-2018 IPR005598 ATP synthase protein I CLM_0103 80028ece5e6c5a20c87979c5127e084a 246 SUPERFAMILY SSF53335 8 209 2.27E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_0103 80028ece5e6c5a20c87979c5127e084a 246 Pfam PF05175 Methyltransferase small domain 34 173 4.7E-10 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CLM_0103 80028ece5e6c5a20c87979c5127e084a 246 Gene3D G3DSA:3.40.50.150 9 245 3.7E-62 T 13-10-2018 CLM_0464 50cddaf4cdf7e79c678bf44620f40a99 183 Pfam PF02659 Putative manganese efflux pump 31 181 4.8E-31 T 13-10-2018 IPR003810 Putative manganese efflux pump CLM_0464 50cddaf4cdf7e79c678bf44620f40a99 183 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 183 19.12 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP CLM_0625 188c26bdf2d28960125d24ece965c5e4 617 Pfam PF13520 Amino acid permease 31 429 6.6E-36 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0625 188c26bdf2d28960125d24ece965c5e4 617 Gene3D G3DSA:1.20.1740.10 33 471 6.6E-22 T 13-10-2018 CLM_0273 3faf71351f28d10ef050cab8f95bb3f4 241 Gene3D G3DSA:3.20.20.370 19 234 9.4E-64 T 13-10-2018 CLM_0273 3faf71351f28d10ef050cab8f95bb3f4 241 SUPERFAMILY SSF88713 37 232 1.27E-53 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CLM_0273 3faf71351f28d10ef050cab8f95bb3f4 241 Pfam PF01522 Polysaccharide deacetylase 35 143 5.2E-32 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CLM_0804 f76214407c669de50498eff093cb2a3c 346 Pfam PF01032 FecCD transport family 31 341 1.9E-86 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_0804 f76214407c669de50498eff093cb2a3c 346 SUPERFAMILY SSF81345 16 341 3.01E-78 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_0804 f76214407c669de50498eff093cb2a3c 346 Gene3D G3DSA:1.10.3470.10 18 346 9.5E-88 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_0837 5cf448418fd928edaa21ec32e95cd6ea 293 SUPERFAMILY SSF103481 39 137 8.76E-14 T 13-10-2018 CLM_0837 5cf448418fd928edaa21ec32e95cd6ea 293 Pfam PF00892 EamA-like transporter family 147 279 5.1E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_0837 5cf448418fd928edaa21ec32e95cd6ea 293 Pfam PF00892 EamA-like transporter family 8 134 3.6E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_0837 5cf448418fd928edaa21ec32e95cd6ea 293 SUPERFAMILY SSF103481 184 279 6.54E-13 T 13-10-2018 CLM_2166 e106f7b993b89f00ba8fd165f671aa13 214 Pfam PF09335 SNARE associated Golgi protein 63 179 7.4E-20 T 13-10-2018 IPR032816 SNARE associated Golgi protein CLM_2283 48480e203d91b88fdfea63d01d5dcfb5 334 Gene3D G3DSA:3.40.1350.10 25 130 3.9E-7 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CLM_1511 a9f1201466a2a91675f1a83f61c5a63b 104 Pfam PF11756 Nitrous oxide-stimulated promoter 5 102 2.2E-36 T 13-10-2018 IPR020483 Uncharacterised protein family YgbA CLM_1511 a9f1201466a2a91675f1a83f61c5a63b 104 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 1 98 3.0E-20 T 13-10-2018 IPR020483 Uncharacterised protein family YgbA CLM_2315 e367a16a71a8dba8b922cbfffaf0a83e 216 PIRSF PIRSF010130 1 216 4.3E-88 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CLM_2315 e367a16a71a8dba8b922cbfffaf0a83e 216 Pfam PF06130 Phosphate propanoyltransferase 140 206 1.3E-17 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CLM_2315 e367a16a71a8dba8b922cbfffaf0a83e 216 Pfam PF06130 Phosphate propanoyltransferase 32 110 5.7E-28 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CLM_0452 1be6deff5585d98b23cc0864cd669948 343 Pfam PF01757 Acyltransferase family 13 327 3.3E-30 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 CLM_3189 57e9acfb336d708d1654c3927a095b6f 175 SUPERFAMILY SSF55144 1 173 6.63E-29 T 13-10-2018 IPR009097 Cyclic phosphodiesterase CLM_3189 57e9acfb336d708d1654c3927a095b6f 175 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 1 173 20.335 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 CLM_3189 57e9acfb336d708d1654c3927a095b6f 175 Gene3D G3DSA:3.90.1140.10 1 173 9.1E-33 T 13-10-2018 CLM_3189 57e9acfb336d708d1654c3927a095b6f 175 Pfam PF13563 2'-5' RNA ligase superfamily 31 133 3.3E-8 T 13-10-2018 CLM_3189 57e9acfb336d708d1654c3927a095b6f 175 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 1 169 1.8E-33 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 CLM_2846 d4b51e2f1aa8fd732dbd9077f01ba97d 59 SUPERFAMILY SSF140500 3 55 3.92E-7 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_2846 d4b51e2f1aa8fd732dbd9077f01ba97d 59 Pfam PF09388 Spo0E like sporulation regulatory protein 7 50 1.7E-10 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 CLM_0924 25df99c7306e2d2a9220640c3e4e0a56 262 SUPERFAMILY SSF52540 7 229 7.71E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0924 25df99c7306e2d2a9220640c3e4e0a56 262 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CLM_0924 25df99c7306e2d2a9220640c3e4e0a56 262 Gene3D G3DSA:3.40.50.300 2 248 5.5E-66 T 13-10-2018 CLM_0924 25df99c7306e2d2a9220640c3e4e0a56 262 SMART SM00382 33 215 4.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CLM_0924 25df99c7306e2d2a9220640c3e4e0a56 262 Pfam PF00005 ABC transporter 24 167 7.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CLM_1701 5355f85a871c466f9f74cd3a4b781744 243 Pfam PF05949 Bacterial protein of unknown function (DUF881) 91 237 5.5E-35 T 13-10-2018 IPR010273 Protein of unknown function DUF881 CLM_1701 5355f85a871c466f9f74cd3a4b781744 243 Gene3D G3DSA:3.30.70.1880 89 243 1.9E-27 T 13-10-2018 CLM_2375 9ec4681bcc32b8c30c2c7089cf314f71 173 Pfam PF16107 Domain of unknown function (DUF4825) 45 144 4.1E-25 T 13-10-2018 IPR032250 Domain of unknown function DUF4825 CLM_3864 3f85e38458fc1800352369a5fa438170 120 PIRSF PIRSF033595 1 117 1.3E-39 T 13-10-2018 IPR017016 Uncharacterised conserved protein UCP033595 CLM_2893 2dd40c7a800fdf7795fdde837267705c 285 SUPERFAMILY SSF53474 5 276 2.62E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_2893 2dd40c7a800fdf7795fdde837267705c 285 Pfam PF00975 Thioesterase domain 5 276 3.3E-11 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 CLM_1919 54e1ed574ebe6d31ae9d1dba77b73c69 146 SUPERFAMILY SSF49764 14 145 7.46E-38 T 13-10-2018 IPR008978 HSP20-like chaperone CLM_1919 54e1ed574ebe6d31ae9d1dba77b73c69 146 Gene3D G3DSA:2.60.40.790 9 146 1.7E-36 T 13-10-2018 IPR008978 HSP20-like chaperone CLM_1919 54e1ed574ebe6d31ae9d1dba77b73c69 146 Pfam PF00011 Hsp20/alpha crystallin family 45 146 7.9E-26 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain CLM_2215 b74139bf55ffa9e878ab3427dd659c18 363 PIRSF PIRSF000112 1 359 5.0E-91 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 CLM_2215 b74139bf55ffa9e878ab3427dd659c18 363 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 2.1E-65 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CLM_2215 b74139bf55ffa9e878ab3427dd659c18 363 Gene3D G3DSA:1.20.1090.10 160 363 2.3E-80 T 13-10-2018 CLM_2215 b74139bf55ffa9e878ab3427dd659c18 363 Gene3D G3DSA:3.40.50.1970 2 159 9.1E-40 T 13-10-2018 CLM_2215 b74139bf55ffa9e878ab3427dd659c18 363 SUPERFAMILY SSF56796 3 355 1.96E-88 T 13-10-2018 CLM_2791 f0500f58b79c321f18a82b6e75be4274 388 TIGRFAM TIGR02871 spore_ylbJ: sporulation integral membrane protein YlbJ 24 379 1.8E-145 T 13-10-2018 IPR014226 Sporulation integral membrane protein YlbJ CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 SUPERFAMILY SSF103473 7 450 9.59E-37 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 233 452 7.4E-40 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 10 229 1.8E-41 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 Gene3D G3DSA:1.20.1250.20 228 465 4.8E-55 T 13-10-2018 CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 Gene3D G3DSA:1.20.1250.20 1 227 3.3E-57 T 13-10-2018 CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 Pfam PF00854 POT family 238 420 2.3E-36 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_1774 66ce4c6caa61bdc32ed6def6fd4e9976 467 Pfam PF00854 POT family 85 208 1.6E-19 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CLM_1752 0e4ccf595239599e4e06708d15fa5c0d 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 268 7.1E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1752 0e4ccf595239599e4e06708d15fa5c0d 274 SUPERFAMILY SSF161098 3 274 2.43E-73 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1752 0e4ccf595239599e4e06708d15fa5c0d 274 Gene3D G3DSA:1.10.3720.10 1 265 1.0E-67 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2963 2990c0232115d4cb79f8c60be45e496f 227 Pfam PF00149 Calcineurin-like phosphoesterase 2 208 6.8E-8 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CLM_2963 2990c0232115d4cb79f8c60be45e496f 227 SUPERFAMILY SSF56300 2 211 4.14E-15 T 13-10-2018 CLM_2963 2990c0232115d4cb79f8c60be45e496f 227 Gene3D G3DSA:3.60.21.10 1 223 2.5E-8 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CLM_2145 862b5be7273952c4312b772086a8f761 283 Pfam PF12679 ABC-2 family transporter protein 2 280 3.2E-8 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_1482 f29b4478ce2fb3abea7a682ec778b1f1 154 Pfam PF10779 Haemolysin XhlA 13 76 1.0E-21 T 13-10-2018 IPR019715 Haemolysin XhlA CLM_3852 8ebfbfc264282c1d125eb2826e733041 296 Gene3D G3DSA:3.30.70.3040 49 158 2.8E-11 T 13-10-2018 CLM_3852 8ebfbfc264282c1d125eb2826e733041 296 PIRSF PIRSF003097 1 296 5.9E-85 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 CLM_3852 8ebfbfc264282c1d125eb2826e733041 296 Pfam PF02687 FtsX-like permease family 201 294 1.5E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_3286 1c818f8187896b06ac0fa2076120d9d6 245 TIGRFAM TIGR03172 TIGR03172: putative selenium-dependent hydroxylase accessory protein YqeC 14 237 1.7E-48 T 13-10-2018 IPR017587 Putative selenium-dependent hydroxylase accessory protein YqeC CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 SUPERFAMILY SSF55031 241 390 2.7E-5 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 Gene3D G3DSA:3.40.630.10 2 286 3.9E-62 T 13-10-2018 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 SUPERFAMILY SSF53187 11 480 6.29E-60 T 13-10-2018 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PIRSF PIRSF016599 1 481 1.1E-189 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 Pfam PF07687 Peptidase dimerisation domain 211 290 1.2E-10 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 Gene3D G3DSA:3.40.630.10 347 481 5.3E-24 T 13-10-2018 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 249 268 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 426 442 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 361 379 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 204 221 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 PRINTS PR00934 X-His dipeptidase (M25) signature 448 470 7.4E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 Pfam PF01546 Peptidase family M20/M25/M40 73 479 1.3E-22 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CLM_2438 e1e0cc95b1ad24f3815a2c650e4ba189 481 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 7 481 1.1E-184 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CLM_2751 8a96e5a46a834e2ec0f2d6158c73e2ec 60 SUPERFAMILY SSF57829 2 56 2.2E-19 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CLM_2751 8a96e5a46a834e2ec0f2d6158c73e2ec 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 3 56 18.49 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2751 8a96e5a46a834e2ec0f2d6158c73e2ec 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 3 56 6.7E-27 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_2751 8a96e5a46a834e2ec0f2d6158c73e2ec 60 Pfam PF01783 Ribosomal L32p protein family 3 57 3.3E-25 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_1135 4d91e1aab0a341720f800091ff74e5bd 147 SUPERFAMILY SSF55729 11 145 2.57E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1135 4d91e1aab0a341720f800091ff74e5bd 147 Pfam PF13508 Acetyltransferase (GNAT) domain 34 113 1.4E-10 T 13-10-2018 IPR000182 GNAT domain CLM_1135 4d91e1aab0a341720f800091ff74e5bd 147 Gene3D G3DSA:3.40.630.30 1 147 5.7E-37 T 13-10-2018 CLM_0041 167bc495eb946d937629e28d3507e7cb 86 TIGRFAM TIGR02862 spore_BofA: pro-sigmaK processing inhibitor BofA 4 86 1.9E-28 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA CLM_0041 167bc495eb946d937629e28d3507e7cb 86 Pfam PF07441 SigmaK-factor processing regulatory protein BofA 12 85 2.5E-24 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA CLM_0878 760408e8ed025eb65cc988f20017dee1 202 Pfam PF06114 IrrE N-terminal-like domain 100 180 1.3E-13 T 13-10-2018 IPR010359 IrrE N-terminal-like domain CLM_0543 5a8a0724c37cbc433f9b1e243af10b48 147 Pfam PF12821 Threonine/Serine exporter, ThrE 5 132 9.0E-39 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE CLM_1552 85eb4e42edc155e52fbffaef1021fb04 385 Gene3D G3DSA:3.30.565.10 260 379 7.2E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1552 85eb4e42edc155e52fbffaef1021fb04 385 SUPERFAMILY SSF55874 295 379 1.1E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLM_1552 85eb4e42edc155e52fbffaef1021fb04 385 Pfam PF07730 Histidine kinase 187 252 9.1E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CLM_2106 8e6a53c4a289f0f6a4aab367f5357aa3 198 TIGRFAM TIGR02830 spore_III_AG: stage III sporulation protein AG 20 197 3.9E-55 T 13-10-2018 IPR014195 Sporulation stage III, protein AG CLM_4139 00b345edec576f5d791ac960406dff5f 351 TIGRFAM TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI 11 351 2.9E-86 T 13-10-2018 IPR014227 Putative transport protein YtvI-like CLM_4139 00b345edec576f5d791ac960406dff5f 351 Pfam PF01594 AI-2E family transporter 12 342 6.8E-44 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CLM_3854 d88458729fc62f40a0bd759bc207dbb6 300 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 21 231 9.0E-60 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CLM_3854 d88458729fc62f40a0bd759bc207dbb6 300 Gene3D G3DSA:3.30.70.120 208 283 7.0E-25 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_3854 d88458729fc62f40a0bd759bc207dbb6 300 PIRSF PIRSF006483 8 297 3.1E-83 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CLM_3854 d88458729fc62f40a0bd759bc207dbb6 300 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 236 290 1.3E-21 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 CLM_1983 87c1e3f122fc8b9949bce6db7a1fffb4 164 Gene3D G3DSA:3.40.250.10 30 162 4.1E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1983 87c1e3f122fc8b9949bce6db7a1fffb4 164 Pfam PF00581 Rhodanese-like domain 55 157 7.2E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_1983 87c1e3f122fc8b9949bce6db7a1fffb4 164 SUPERFAMILY SSF52821 46 158 1.7E-13 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CLM_1983 87c1e3f122fc8b9949bce6db7a1fffb4 164 SMART SM00450 54 162 2.8E-5 T 13-10-2018 IPR001763 Rhodanese-like domain CLM_3147 adba6e503e9ab64a29c5e12a01a4702e 473 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 420 7.7E-52 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3147 adba6e503e9ab64a29c5e12a01a4702e 473 PIRSF PIRSF006603 2 456 3.8E-88 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3147 adba6e503e9ab64a29c5e12a01a4702e 473 Pfam PF01554 MatE 257 408 5.7E-20 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3147 adba6e503e9ab64a29c5e12a01a4702e 473 Pfam PF01554 MatE 23 184 1.5E-25 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_2023 4ff7964ef2fd11702452545d17669bec 82 SUPERFAMILY SSF55021 3 80 3.84E-15 T 13-10-2018 CLM_2023 4ff7964ef2fd11702452545d17669bec 82 Gene3D G3DSA:3.30.70.1150 1 82 4.4E-8 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CLM_1181 8e839790444f372480770a951a150d7f 194 Gene3D G3DSA:3.40.50.880 1 192 2.3E-38 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1181 8e839790444f372480770a951a150d7f 194 SUPERFAMILY SSF52317 1 192 8.87E-37 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CLM_1181 8e839790444f372480770a951a150d7f 194 Pfam PF01965 DJ-1/PfpI family 2 177 6.0E-28 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CLM_3764 09f4b17b7e2ccf3bdccd98b8237d0154 330 SUPERFAMILY SSF48317 137 296 7.33E-12 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLM_3764 09f4b17b7e2ccf3bdccd98b8237d0154 330 Gene3D G3DSA:1.20.144.10 213 311 5.8E-11 T 13-10-2018 CLM_3764 09f4b17b7e2ccf3bdccd98b8237d0154 330 Pfam PF14378 PAP2 superfamily 135 287 1.8E-12 T 13-10-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 CLM_1494 354347ba312ae585f8ba5afafb7f886c 481 PIRSF PIRSF006247 1 480 1.1E-162 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 CLM_1494 354347ba312ae585f8ba5afafb7f886c 481 Pfam PF02386 Cation transport protein 39 475 3.7E-53 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CLM_2226 61d70f19eeb077353e14728d5186ee36 434 PIRSF PIRSF006054 6 432 5.7E-131 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CLM_2226 61d70f19eeb077353e14728d5186ee36 434 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 9 431 34.317 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CLM_2226 61d70f19eeb077353e14728d5186ee36 434 Pfam PF03313 Serine dehydratase alpha chain 190 426 3.2E-50 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CLM_2220 a7321907ff2cdcea9d0e5b305e095eb7 92 Pfam PF03477 ATP cone domain 1 90 2.4E-10 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CLM_1312 adf387b8a90747625ea28e0525a3b80c 138 Pfam PF09021 HutP 8 133 3.5E-45 T 13-10-2018 IPR015111 Hut operon regulatory protein HutP CLM_3971 8235bf6d8088739559348f42604a29f6 146 Pfam PF00636 Ribonuclease III domain 22 120 2.6E-14 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CLM_3971 8235bf6d8088739559348f42604a29f6 146 Gene3D G3DSA:1.10.1520.10 7 140 2.4E-44 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CLM_3971 8235bf6d8088739559348f42604a29f6 146 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 12 137 28.462 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family CLM_3971 8235bf6d8088739559348f42604a29f6 146 SUPERFAMILY SSF69065 14 133 1.24E-34 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CLM_3971 8235bf6d8088739559348f42604a29f6 146 PIRSF PIRSF005520 6 141 3.1E-51 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family CLM_2256 c9e23ae6dad1949cb0d947a94abd2c29 703 SUPERFAMILY SSF52540 152 508 7.11E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_1698 b24e1f3e7e6abf60a994ad0736a3b2d3 256 Pfam PF08478 POTRA domain, FtsQ-type 45 113 2.1E-17 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type CLM_1698 b24e1f3e7e6abf60a994ad0736a3b2d3 256 Gene3D G3DSA:3.10.20.310 44 113 9.1E-7 T 13-10-2018 CLM_1698 b24e1f3e7e6abf60a994ad0736a3b2d3 256 Pfam PF03799 Cell division protein FtsQ 123 244 1.8E-5 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB CLM_1698 b24e1f3e7e6abf60a994ad0736a3b2d3 256 Hamap MF_00912 Cell division protein DivIB [divIB]. 1 235 24.221 T 13-10-2018 IPR026580 Cell division protein DivIB CLM_2300 bed2f9957e0cdf79c8e7f58d64b85a28 414 Pfam PF10592 AIPR protein 46 349 9.2E-27 T 13-10-2018 IPR018891 Abortive bacteriophage infection, resistance CLM_2450 f4a11bdd5c10b06f301536a2edbd0df9 356 SUPERFAMILY SSF51726 6 348 4.19E-49 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_2450 f4a11bdd5c10b06f301536a2edbd0df9 356 Gene3D G3DSA:3.20.20.210 1 345 9.6E-71 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CLM_2450 f4a11bdd5c10b06f301536a2edbd0df9 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 8 345 1.0E-68 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CLM_1026 ceec3647363cc86df7c58b142bf66e6f 216 Gene3D G3DSA:2.160.10.10 1 215 2.9E-67 T 13-10-2018 CLM_1026 ceec3647363cc86df7c58b142bf66e6f 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 150 2.3E-7 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_1026 ceec3647363cc86df7c58b142bf66e6f 216 SUPERFAMILY SSF51161 57 211 1.28E-42 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_1026 ceec3647363cc86df7c58b142bf66e6f 216 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 125 153 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CLM_1753 31b7af3491ee4c3d3134b1ea7562942a 453 SUPERFAMILY SSF53850 47 440 2.66E-75 T 13-10-2018 CLM_1753 31b7af3491ee4c3d3134b1ea7562942a 453 Gene3D G3DSA:3.40.190.10 51 403 1.2E-88 T 13-10-2018 CLM_1753 31b7af3491ee4c3d3134b1ea7562942a 453 Pfam PF13416 Bacterial extracellular solute-binding protein 66 382 6.7E-45 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CLM_1753 31b7af3491ee4c3d3134b1ea7562942a 453 Gene3D G3DSA:3.40.190.10 169 439 1.2E-88 T 13-10-2018 CLM_2373 f5c1237650e38e6912c99feb78bdb234 246 Gene3D G3DSA:3.40.50.150 12 241 1.7E-30 T 13-10-2018 CLM_2373 f5c1237650e38e6912c99feb78bdb234 246 Pfam PF13649 Methyltransferase domain 38 129 9.3E-11 T 13-10-2018 CLM_2373 f5c1237650e38e6912c99feb78bdb234 246 Gene3D G3DSA:2.20.25.110 137 204 1.7E-30 T 13-10-2018 CLM_2373 f5c1237650e38e6912c99feb78bdb234 246 SUPERFAMILY SSF53335 17 230 2.99E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_1586 4898a5cf130adb12dac2798cd6ab9525 506 Pfam PF03606 C4-dicarboxylate anaerobic carrier 10 502 1.0E-137 T 13-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 CLM_1831 a4f5678f28d891ac703c9881438ce6f6 198 Pfam PF08876 Domain of unknown function (DUF1836) 22 129 2.8E-31 T 13-10-2018 IPR014975 Protein of unknown function DUF1836 CLM_1227 9dc5553a53d4c19b1825809aada080e8 297 SUPERFAMILY SSF102114 11 292 3.79E-37 T 13-10-2018 CLM_1227 9dc5553a53d4c19b1825809aada080e8 297 Pfam PF13186 Iron-sulfur cluster-binding domain 224 289 1.7E-11 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CLM_1227 9dc5553a53d4c19b1825809aada080e8 297 Pfam PF04055 Radical SAM superfamily 14 119 3.8E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_0043 238941abb571c200a7db002e411edf4e 162 Pfam PF00293 NUDIX domain 43 148 1.6E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_0043 238941abb571c200a7db002e411edf4e 162 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CLM_0043 238941abb571c200a7db002e411edf4e 162 SUPERFAMILY SSF55811 4 160 3.93E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_0043 238941abb571c200a7db002e411edf4e 162 Gene3D G3DSA:3.90.79.10 38 162 6.5E-23 T 13-10-2018 CLM_0570 672458195300beeba234ef665f673c3a 334 Pfam PF09992 Phosphodiester glycosidase 149 332 4.5E-48 T 13-10-2018 IPR018711 Phosphodiester glycosidase CLM_1762 951090aa5c5337a80d75419b0d51d124 159 SMART SM00347 33 133 1.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1762 951090aa5c5337a80d75419b0d51d124 159 Gene3D G3DSA:1.10.10.10 1 157 6.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_1762 951090aa5c5337a80d75419b0d51d124 159 SUPERFAMILY SSF46785 8 148 3.35E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_1762 951090aa5c5337a80d75419b0d51d124 159 Pfam PF01047 MarR family 42 97 8.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CLM_1261 8fddd015f949e2fa09cbe249489494bf 455 Pfam PF01554 MatE 22 185 2.0E-26 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1261 8fddd015f949e2fa09cbe249489494bf 455 Pfam PF01554 MatE 252 407 1.1E-21 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1261 8fddd015f949e2fa09cbe249489494bf 455 PIRSF PIRSF006603 1 453 2.8E-97 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1261 8fddd015f949e2fa09cbe249489494bf 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 419 1.6E-66 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3790 eab4b94aae40d0a138855da8a8a26614 80 SUPERFAMILY SSF82771 2 71 4.97E-15 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3790 eab4b94aae40d0a138855da8a8a26614 80 Gene3D G3DSA:3.40.1440.10 1 80 7.1E-33 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CLM_3790 eab4b94aae40d0a138855da8a8a26614 80 Pfam PF01541 GIY-YIG catalytic domain 1 72 2.4E-18 T 13-10-2018 IPR000305 GIY-YIG endonuclease CLM_0692 8ab3458a3d99175f4f167b86a9003d54 196 Pfam PF01433 Peptidase family M1 domain 68 147 2.7E-6 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CLM_0692 8ab3458a3d99175f4f167b86a9003d54 196 Gene3D G3DSA:1.10.390.60 11 190 6.3E-7 T 13-10-2018 CLM_0906 8664aa2b8756f889d49e8db2a09fca71 123 Gene3D G3DSA:3.40.30.10 1 110 2.9E-42 T 13-10-2018 CLM_0906 8664aa2b8756f889d49e8db2a09fca71 123 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 123 2.0E-47 T 13-10-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 CLM_2184 a04c4e4fc08e0315d63fc0dadfe954fe 739 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 150 429 4.2E-49 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 CLM_2563 f63aa9da49850ad1e79541ef0befc9ee 290 Pfam PF09681 N-terminal phage replisome organiser (Phage_rep_org_N) 6 125 3.0E-55 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain CLM_2563 f63aa9da49850ad1e79541ef0befc9ee 290 TIGRFAM TIGR01714 phage_rep_org_N: phage replisome organizer, putative, N-terminal region 6 125 3.3E-44 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain CLM_4142 4a95c2b6bdb975bddee3a57c10937d8b 169 Pfam PF14584 Protein of unknown function (DUF4446) 15 162 1.7E-56 T 13-10-2018 IPR027981 Protein of unknown function DUF4446 CLM_2896 3fdbf0c6146c6e7024d239076d5d2a0b 82 Gene3D G3DSA:1.10.1200.10 1 81 6.1E-15 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2896 3fdbf0c6146c6e7024d239076d5d2a0b 82 SUPERFAMILY SSF47336 3 78 2.08E-10 T 13-10-2018 IPR036736 ACP-like superfamily CLM_2162 2f4bf861eb61640c10e41689abd54010 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 218 1.2E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_2162 2f4bf861eb61640c10e41689abd54010 223 Gene3D G3DSA:1.10.3720.10 3 223 1.4E-30 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2162 2f4bf861eb61640c10e41689abd54010 223 SUPERFAMILY SSF161098 13 217 1.96E-33 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2104 a34f4b75ee4b954e65fc70ea4f922f7a 131 Pfam PF03780 Asp23 family, cell envelope-related function 11 117 1.0E-37 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 CLM_4050 43c5f09e564ba5b1b386922029526f12 298 Pfam PF13353 4Fe-4S single cluster domain 55 152 4.5E-6 T 13-10-2018 CLM_4050 43c5f09e564ba5b1b386922029526f12 298 Gene3D G3DSA:3.20.20.70 46 263 1.5E-15 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_4050 43c5f09e564ba5b1b386922029526f12 298 SUPERFAMILY SSF102114 60 189 2.62E-11 T 13-10-2018 CLM_4050 43c5f09e564ba5b1b386922029526f12 298 PIRSF PIRSF004869 1 291 8.7E-78 T 13-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted CLM_4050 43c5f09e564ba5b1b386922029526f12 298 Pfam PF04055 Radical SAM superfamily 56 224 8.7E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CLM_2128 994bd26daf8cc78c2f4c69a4ca063558 357 SUPERFAMILY SSF69304 108 345 1.01E-14 T 13-10-2018 CLM_4061 30816b2aaee276a2d182a5193c3a3475 167 SUPERFAMILY SSF103642 144 165 4.25E-8 T 13-10-2018 CLM_4061 30816b2aaee276a2d182a5193c3a3475 167 Gene3D G3DSA:3.10.450.50 94 166 2.5E-11 T 13-10-2018 CLM_4061 30816b2aaee276a2d182a5193c3a3475 167 Pfam PF02810 SEC-C motif 147 165 2.5E-10 T 13-10-2018 IPR004027 SEC-C motif CLM_3815 77a9145a683ab45abf66bc4183ff3460 178 Pfam PF01613 Flavin reductase like domain 15 173 1.1E-9 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CLM_3815 77a9145a683ab45abf66bc4183ff3460 178 SUPERFAMILY SSF50475 13 176 4.46E-20 T 13-10-2018 CLM_3815 77a9145a683ab45abf66bc4183ff3460 178 Gene3D G3DSA:2.30.110.10 1 177 6.1E-28 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CLM_2035 2f45ff9e367eac7667eeea3b8e25ae9a 195 Pfam PF11611 Domain of unknown function (DUF4352) 57 182 2.0E-12 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 CLM_2035 2f45ff9e367eac7667eeea3b8e25ae9a 195 Gene3D G3DSA:2.60.40.1240 49 193 3.5E-13 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLM_0538 0826a1735b2f4019b09b17917890d4be 314 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 293 2.1E-48 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CLM_0917 2241c44cfa02b8b62c4c9e5aea02e003 153 SUPERFAMILY SSF52309 3 136 1.65E-16 T 13-10-2018 CLM_0917 2241c44cfa02b8b62c4c9e5aea02e003 153 Gene3D G3DSA:3.40.50.450 3 153 9.7E-55 T 13-10-2018 CLM_3174 7d3340ec0f8f449b8943dc74b36dd49e 341 Pfam PF06725 3D domain 280 340 6.7E-24 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 CLM_3174 7d3340ec0f8f449b8943dc74b36dd49e 341 Gene3D G3DSA:2.40.40.10 165 330 2.5E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily CLM_3174 7d3340ec0f8f449b8943dc74b36dd49e 341 SUPERFAMILY SSF50685 278 330 2.06E-10 T 13-10-2018 IPR036908 RlpA-like domain superfamily CLM_0849 53947de2a6c64e982095c59d78d17242 254 Pfam PF00376 MerR family regulatory protein 7 43 8.4E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0849 53947de2a6c64e982095c59d78d17242 254 SUPERFAMILY SSF46955 127 212 3.08E-17 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_0849 53947de2a6c64e982095c59d78d17242 254 Gene3D G3DSA:1.10.1660.10 123 250 6.5E-20 T 13-10-2018 CLM_0849 53947de2a6c64e982095c59d78d17242 254 Gene3D G3DSA:1.10.1660.10 1 122 1.0E-18 T 13-10-2018 CLM_0849 53947de2a6c64e982095c59d78d17242 254 SMART SM00422 127 195 3.4E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0849 53947de2a6c64e982095c59d78d17242 254 SMART SM00422 5 70 5.6E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0849 53947de2a6c64e982095c59d78d17242 254 Pfam PF13411 MerR HTH family regulatory protein 130 194 4.6E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CLM_0849 53947de2a6c64e982095c59d78d17242 254 SUPERFAMILY SSF46955 5 70 2.56E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CLM_1462 5ae082bf7339dbe5bac9323163219690 88 Gene3D G3DSA:1.20.58.1000 1 83 6.6E-29 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily CLM_1462 5ae082bf7339dbe5bac9323163219690 88 Pfam PF02583 Metal-sensitive transcriptional repressor 4 84 2.6E-27 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CLM_1459 8264c1cc3ef2e82065a38369cb36f3ab 364 SUPERFAMILY SSF51445 53 348 7.84E-20 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CLM_1459 8264c1cc3ef2e82065a38369cb36f3ab 364 Gene3D G3DSA:3.20.20.80 44 364 1.0E-59 T 13-10-2018 CLM_2331 b1562b5f359f1952a1bd60238da355f8 370 SUPERFAMILY SSF103481 112 184 1.28E-6 T 13-10-2018 CLM_1085 983139ac4fb7cedfeb9f310d27a6659f 164 Gene3D G3DSA:3.30.460.10 1 142 2.3E-48 T 13-10-2018 CLM_1085 983139ac4fb7cedfeb9f310d27a6659f 164 SUPERFAMILY SSF81301 2 142 1.44E-48 T 13-10-2018 CLM_1085 983139ac4fb7cedfeb9f310d27a6659f 164 Pfam PF04229 GrpB protein 6 135 1.2E-46 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase CLM_3009 4132a31412c89a86bc6b7b8425855aa1 286 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 23 261 2.8E-22 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLM_3009 4132a31412c89a86bc6b7b8425855aa1 286 PIRSF PIRSF003092 1 286 2.0E-94 T 13-10-2018 IPR025501 ATP binding protein MinD CLM_3009 4132a31412c89a86bc6b7b8425855aa1 286 Gene3D G3DSA:3.40.50.300 21 262 9.3E-57 T 13-10-2018 CLM_3009 4132a31412c89a86bc6b7b8425855aa1 286 SUPERFAMILY SSF52540 22 268 3.07E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_2857 a860af92deb076a4bec22bdfc6961bcc 267 TIGRFAM TIGR00616 rect: recombinase, phage RecT family 19 226 1.2E-24 T 13-10-2018 IPR004590 DNA single-strand annealing protein RecT GO:0003677|GO:0006259 CLM_2857 a860af92deb076a4bec22bdfc6961bcc 267 Pfam PF03837 RecT family 34 238 8.0E-43 T 13-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 CLM_0411 468492aae5341db1d0f43a8a1df7db46 468 Gene3D G3DSA:1.20.1740.10 1 463 1.8E-46 T 13-10-2018 CLM_0411 468492aae5341db1d0f43a8a1df7db46 468 PIRSF PIRSF006060 1 468 9.6E-67 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_0411 468492aae5341db1d0f43a8a1df7db46 468 Pfam PF13520 Amino acid permease 5 437 1.5E-61 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1016 a3479906d6d675625f0d82862898c79f 234 Gene3D G3DSA:3.40.50.1820 9 232 2.2E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_1016 a3479906d6d675625f0d82862898c79f 234 SUPERFAMILY SSF53474 11 230 5.13E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CLM_0427 27ce60deaaedbd5aa80cda509244f3dd 446 Pfam PF01554 MatE 16 179 9.1E-26 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0427 27ce60deaaedbd5aa80cda509244f3dd 446 Pfam PF01554 MatE 243 405 3.4E-28 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0427 27ce60deaaedbd5aa80cda509244f3dd 446 TIGRFAM TIGR00797 matE: MATE efflux family protein 16 408 6.4E-66 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_0427 27ce60deaaedbd5aa80cda509244f3dd 446 PIRSF PIRSF006603 2 446 2.2E-73 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_1945 34b0be152b38b671f4ceb67c851414f5 452 Pfam PF07670 Nucleoside recognition 139 234 4.5E-7 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_3323 efdddf49bf41480c98d1d97637395dfa 250 Gene3D G3DSA:3.20.20.190 1 243 7.4E-95 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CLM_3323 efdddf49bf41480c98d1d97637395dfa 250 SUPERFAMILY SSF51695 3 239 2.28E-82 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CLM_3323 efdddf49bf41480c98d1d97637395dfa 250 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 9 234 3.2E-49 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CLM_0028 d8dda3ee755f4abc7b3f160efaf8f432 295 Hamap MF_00663 Phosphatidylserine decarboxylase proenzyme [psd]. 1 294 43.583 T 13-10-2018 IPR033179 Phosphatidylserine decarboxylase, prokaryotic type 2 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 CLM_0028 d8dda3ee755f4abc7b3f160efaf8f432 295 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 77 278 2.7E-44 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CLM_0028 d8dda3ee755f4abc7b3f160efaf8f432 295 Pfam PF02666 Phosphatidylserine decarboxylase 86 292 2.9E-57 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CLM_4081 dae4c9121d20afcbc7a885eff5f58488 143 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 138 1.8E-30 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CLM_1657 5d88415abae27d0353e368c4270666e1 418 Pfam PF04860 Phage portal protein 48 381 7.6E-77 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein CLM_1657 5d88415abae27d0353e368c4270666e1 418 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 42 387 2.6E-72 T 13-10-2018 IPR006427 Phage portal protein, HK97 CLM_0755 e0a4f7ec76ef3784eb188cfcde15b03f 524 Pfam PF09820 Predicted AAA-ATPase 5 259 4.8E-58 T 13-10-2018 IPR018631 AAA-ATPase-like domain CLM_0755 e0a4f7ec76ef3784eb188cfcde15b03f 524 Pfam PF08011 PD-(D/E)XK nuclease superfamily 413 520 1.6E-20 T 13-10-2018 IPR012547 PD-(D/E)XK nuclease superfamily 9 CLM_1421 6589d594d60cdb4eeb0432d4c9fd387f 109 PIRSF PIRSF000181 1 109 3.3E-55 T 13-10-2018 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 CLM_1421 6589d594d60cdb4eeb0432d4c9fd387f 109 Pfam PF04723 Glycine reductase complex selenoprotein A 1 101 3.8E-50 T 13-10-2018 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 CLM_0903 72f33af6a8ea50efbdc438a8a51fa938 138 SMART SM00226 3 128 6.0E-19 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0903 72f33af6a8ea50efbdc438a8a51fa938 138 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 125 1.5E-13 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CLM_0903 72f33af6a8ea50efbdc438a8a51fa938 138 Gene3D G3DSA:3.40.50.2300 2 134 2.1E-33 T 13-10-2018 CLM_0903 72f33af6a8ea50efbdc438a8a51fa938 138 SUPERFAMILY SSF52788 4 127 3.27E-29 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLM_3206 4421f5f2ff77b539401fcc83489a2903 200 Gene3D G3DSA:1.10.357.10 5 185 2.3E-36 T 13-10-2018 CLM_3206 4421f5f2ff77b539401fcc83489a2903 200 SUPERFAMILY SSF46689 7 72 4.77E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_3206 4421f5f2ff77b539401fcc83489a2903 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 58 5.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CLM_0720 2163b723d9bb038723b43249af88b5c1 379 Pfam PF13303 Phosphotransferase system, EIIC 29 327 1.4E-59 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CLM_1725 2c1d62e3b988463a0edd8482da81265e 307 SUPERFAMILY SSF52151 7 304 3.4E-35 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLM_1725 2c1d62e3b988463a0edd8482da81265e 307 Pfam PF01734 Patatin-like phospholipase 7 199 9.0E-27 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CLM_1725 2c1d62e3b988463a0edd8482da81265e 307 Gene3D G3DSA:3.40.1090.10 122 296 1.5E-17 T 13-10-2018 CLM_1725 2c1d62e3b988463a0edd8482da81265e 307 Gene3D G3DSA:3.40.1090.10 5 121 1.7E-19 T 13-10-2018 CLM_2658 6f45f227a54d83e731359cd2b56e5754 201 Pfam PF06810 Phage minor structural protein GP20 23 149 1.3E-33 T 13-10-2018 IPR009636 Capsid assembly scaffolding protein GO:0019069 CLM_1263 47cc4a2b7aa36d9fb1f889aaf1bdf715 325 Pfam PF11185 Protein of unknown function (DUF2971) 124 242 4.1E-9 T 13-10-2018 IPR021352 Protein of unknown function DUF2971 CLM_2628 3782fbf350e65b2ec96ae12f6b66ad5a 82 Pfam PF01381 Helix-turn-helix 7 61 7.1E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_2628 3782fbf350e65b2ec96ae12f6b66ad5a 82 Gene3D G3DSA:1.10.260.40 2 65 1.9E-25 T 13-10-2018 CLM_2628 3782fbf350e65b2ec96ae12f6b66ad5a 82 SUPERFAMILY SSF47413 3 70 2.36E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CLM_2628 3782fbf350e65b2ec96ae12f6b66ad5a 82 SMART SM00530 6 61 7.8E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CLM_1388 8a6f68801bad2b29823fed31f35f362d 354 SUPERFAMILY SSF82171 44 314 2.35E-15 T 13-10-2018 CLM_3296 133a287fd68db168fbf490779e710329 198 Pfam PF02698 DUF218 domain 44 166 9.1E-31 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CLM_3296 133a287fd68db168fbf490779e710329 198 Gene3D G3DSA:3.40.50.620 78 165 4.0E-7 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLM_3185 ddd070341b4bac044160e7799ef0454f 351 Pfam PF02698 DUF218 domain 165 316 1.9E-29 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CLM_0688 e7e114abb979ab9dfe6eb812cd9169c8 41 TIGRFAM TIGR04333 Clo7Bot_mod_Cys: Cys-rich peptide, Clo7bot family 1 33 1.3E-16 T 13-10-2018 IPR027601 Cys-rich peptide, Clo7bot family CLM_0758 3ccb53e8681b5b33c662bb6bd2c85a1c 222 Pfam PF02698 DUF218 domain 48 168 6.3E-26 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CLM_3053 f7ea8be72d715d023a54c18a5b83c5a2 227 Pfam PF02706 Chain length determinant protein 6 97 8.2E-15 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 CLM_3053 f7ea8be72d715d023a54c18a5b83c5a2 227 Pfam PF13807 G-rich domain on putative tyrosine kinase 155 197 3.1E-8 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain CLM_1747 caa21f79847c6101c15e8e25a5310086 736 Pfam PF02687 FtsX-like permease family 270 364 7.0E-13 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_4123 6017f83de959649165ff24d4747a3a41 71 Pfam PF11213 Protein of unknown function (DUF3006) 3 69 4.7E-21 T 13-10-2018 IPR021377 Protein of unknown function DUF3006 CLM_2434 7d7a379502f1691728ce4077f14f94ab 538 Gene3D G3DSA:3.40.50.12090 53 153 5.5E-9 T 13-10-2018 CLM_2434 7d7a379502f1691728ce4077f14f94ab 538 Gene3D G3DSA:3.40.50.12090 164 258 2.4E-8 T 13-10-2018 CLM_2434 7d7a379502f1691728ce4077f14f94ab 538 Pfam PF04122 Putative cell wall binding repeat 2 135 222 5.1E-16 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_2434 7d7a379502f1691728ce4077f14f94ab 538 Pfam PF04122 Putative cell wall binding repeat 2 240 325 4.5E-21 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_2434 7d7a379502f1691728ce4077f14f94ab 538 Pfam PF04122 Putative cell wall binding repeat 2 31 120 2.1E-19 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_3512 128d0dcffaca36af5ef1f4b2a06bb709 248 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 98 132 4.2E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_3512 128d0dcffaca36af5ef1f4b2a06bb709 248 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 135 167 8.1E-5 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_3512 128d0dcffaca36af5ef1f4b2a06bb709 248 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 10 43 1.4E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CLM_3512 128d0dcffaca36af5ef1f4b2a06bb709 248 Gene3D G3DSA:2.160.10.10 113 235 3.9E-29 T 13-10-2018 CLM_3512 128d0dcffaca36af5ef1f4b2a06bb709 248 Gene3D G3DSA:2.160.10.10 2 112 5.9E-23 T 13-10-2018 CLM_3512 128d0dcffaca36af5ef1f4b2a06bb709 248 SUPERFAMILY SSF51161 5 242 1.07E-42 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CLM_2766 bca1d08f5b49c6578572ef87a675505a 361 Gene3D G3DSA:3.40.50.10690 119 361 1.7E-86 T 13-10-2018 CLM_2766 bca1d08f5b49c6578572ef87a675505a 361 Gene3D G3DSA:2.40.420.10 16 95 1.7E-11 T 13-10-2018 CLM_0376 9329b6b8b6f5afff1f39bac4d0bc8245 205 Pfam PF01554 MatE 3 162 2.5E-25 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CLM_3056 c4da541fdcac7def013223fc33f64d3d 57 SUPERFAMILY SSF140500 5 54 1.14E-6 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_3056 c4da541fdcac7def013223fc33f64d3d 57 Pfam PF09388 Spo0E like sporulation regulatory protein 8 52 3.2E-6 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 CLM_3536 fb7d81df668635a55250f00b5fe3f9cd 196 SUPERFAMILY SSF102829 4 81 3.14E-17 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily CLM_3536 fb7d81df668635a55250f00b5fe3f9cd 196 Pfam PF05164 Cell division protein ZapA 4 127 5.8E-13 T 13-10-2018 IPR007838 Cell division protein ZapA-like CLM_1250 91f7696b873af09367d8dd66ed0bdf15 287 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 13 219 3.2E-63 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CLM_1250 91f7696b873af09367d8dd66ed0bdf15 287 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 225 279 6.5E-22 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 CLM_1250 91f7696b873af09367d8dd66ed0bdf15 287 PIRSF PIRSF006483 2 287 1.1E-95 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CLM_1250 91f7696b873af09367d8dd66ed0bdf15 287 Gene3D G3DSA:3.30.70.120 197 271 5.7E-26 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLM_1777 a1b91f79fc7757cb0d40fb65555010a6 284 Pfam PF08668 HDOD domain 16 213 7.8E-62 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD CLM_1777 a1b91f79fc7757cb0d40fb65555010a6 284 Gene3D G3DSA:1.10.3210.10 1 280 8.9E-77 T 13-10-2018 CLM_1777 a1b91f79fc7757cb0d40fb65555010a6 284 TIGRFAM TIGR00277 HDIG: HDIG domain 116 212 1.1E-7 T 13-10-2018 IPR006675 HDIG domain CLM_1777 a1b91f79fc7757cb0d40fb65555010a6 284 SUPERFAMILY SSF109604 5 276 4.13E-70 T 13-10-2018 CLM_1073 4178230f73879b0a4ae294b554cc1c1a 208 Pfam PF02570 Precorrin-8X methylmutase 10 204 2.6E-79 T 13-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 CLM_1073 4178230f73879b0a4ae294b554cc1c1a 208 Gene3D G3DSA:3.40.50.10230 1 208 2.7E-84 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 CLM_1073 4178230f73879b0a4ae294b554cc1c1a 208 SUPERFAMILY SSF63965 10 207 2.22E-72 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 CLM_3593 8ea6a551d86cb109f827c4e99f4f4602 92 SUPERFAMILY SSF51182 1 91 2.33E-31 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_3593 8ea6a551d86cb109f827c4e99f4f4602 92 Pfam PF06865 Protein of unknown function (DUF1255) 2 91 2.9E-32 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 CLM_3593 8ea6a551d86cb109f827c4e99f4f4602 92 Gene3D G3DSA:2.60.120.10 1 92 7.8E-31 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_2278 1329871601f16925d6d4bc5c32ff9719 224 Pfam PF04892 VanZ like family 63 182 1.9E-24 T 13-10-2018 IPR006976 VanZ-like CLM_0824 d35f452f73f4305b6ae80b8156699cfc 175 Pfam PF00872 Transposase, Mutator family 1 58 5.1E-12 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CLM_2437 937b263bc48096c2f118563aeb6221f8 651 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 36 596 6.1E-93 T 13-10-2018 IPR004814 Oligopeptide transporter OPT CLM_2437 937b263bc48096c2f118563aeb6221f8 651 Pfam PF03169 OPT oligopeptide transporter protein 35 597 2.3E-90 T 13-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 CLM_0047 7c4652438cd9a92f0e54ce60c58b428d 234 SUPERFAMILY SSF69572 5 232 1.31E-60 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CLM_0047 7c4652438cd9a92f0e54ce60c58b428d 234 Pfam PF00899 ThiF family 10 170 5.0E-41 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CLM_0047 7c4652438cd9a92f0e54ce60c58b428d 234 Gene3D G3DSA:3.40.50.720 1 234 1.4E-77 T 13-10-2018 CLM_2560 a635ff4c06e8e7e65a8a425d918525c1 292 SMART SM00717 192 239 4.9E-6 T 13-10-2018 IPR001005 SANT/Myb domain CLM_2560 a635ff4c06e8e7e65a8a425d918525c1 292 SMART SM00717 48 93 33.0 T 13-10-2018 IPR001005 SANT/Myb domain CLM_1378 76eec36510091703f8d15d9569e3c5cf 427 Pfam PF02687 FtsX-like permease family 321 419 4.9E-13 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1378 76eec36510091703f8d15d9569e3c5cf 427 Pfam PF12704 MacB-like periplasmic core domain 21 267 3.3E-16 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CLM_0557 15186375a90248bcf97db8a58a688279 182 Gene3D G3DSA:3.90.79.10 1 173 4.7E-41 T 13-10-2018 CLM_0557 15186375a90248bcf97db8a58a688279 182 SUPERFAMILY SSF55811 2 162 2.71E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CLM_0557 15186375a90248bcf97db8a58a688279 182 Pfam PF00293 NUDIX domain 43 155 3.6E-7 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CLM_2558 d74caa0c1230259408a787218b8ae1eb 79 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 9 48 7.7E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_2558 d74caa0c1230259408a787218b8ae1eb 79 SMART SM00966 8 51 1.2E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_2558 d74caa0c1230259408a787218b8ae1eb 79 Gene3D G3DSA:2.10.260.10 1 55 1.5E-25 T 13-10-2018 CLM_2558 d74caa0c1230259408a787218b8ae1eb 79 SUPERFAMILY SSF89447 1 53 2.22E-16 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily CLM_2558 d74caa0c1230259408a787218b8ae1eb 79 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 50 8.2E-13 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 CLM_4150 2c5679686e3e7bce3b15da26d977518e 217 Pfam PF02096 60Kd inner membrane protein 30 208 8.4E-62 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CLM_4150 2c5679686e3e7bce3b15da26d977518e 217 PRINTS PR00701 60kDa inner membrane protein signature 174 197 2.6E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CLM_4150 2c5679686e3e7bce3b15da26d977518e 217 PRINTS PR00701 60kDa inner membrane protein signature 91 114 2.6E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CLM_4150 2c5679686e3e7bce3b15da26d977518e 217 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 29 208 3.1E-64 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.2E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.2E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.2E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.2E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.2E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 Gene3D G3DSA:3.40.50.720 1 261 4.3E-77 T 13-10-2018 CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 SUPERFAMILY SSF51735 4 259 8.42E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CLM_3879 1d27f15a196965e2fc29767a712a9e97 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 257 3.1E-57 T 13-10-2018 CLM_1318 c024aad086c882d70f4af3e5651c1e29 293 SUPERFAMILY SSF103481 39 141 1.02E-16 T 13-10-2018 CLM_1318 c024aad086c882d70f4af3e5651c1e29 293 SUPERFAMILY SSF103481 189 290 5.49E-17 T 13-10-2018 CLM_1318 c024aad086c882d70f4af3e5651c1e29 293 Pfam PF00892 EamA-like transporter family 6 140 4.6E-32 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_1318 c024aad086c882d70f4af3e5651c1e29 293 Pfam PF00892 EamA-like transporter family 154 288 1.7E-32 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CLM_1043 f092d01f87fa7fc274d86e5d87828965 102 Pfam PF12788 YmaF family 8 102 7.2E-38 T 13-10-2018 IPR024307 YmaF CLM_1271 79d051fface8442e6c3c5bfafc2d1caa 111 Pfam PF00085 Thioredoxin 8 84 2.2E-8 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CLM_1271 79d051fface8442e6c3c5bfafc2d1caa 111 Gene3D G3DSA:3.40.30.10 1 104 4.0E-20 T 13-10-2018 CLM_1271 79d051fface8442e6c3c5bfafc2d1caa 111 SUPERFAMILY SSF52833 2 109 1.88E-16 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CLM_2670 aaead8315fc6509d50b07ef064dc6ddf 807 Pfam PF05272 Virulence-associated protein E 479 676 3.9E-78 T 13-10-2018 IPR007936 Virulence-associated E CLM_2670 aaead8315fc6509d50b07ef064dc6ddf 807 SUPERFAMILY SSF52540 427 668 1.74E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3881 9a8a48e7e8f3cbb7ce6210955bbefbf0 334 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 6 185 3.6E-77 T 13-10-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 CLM_3881 9a8a48e7e8f3cbb7ce6210955bbefbf0 334 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 240 332 8.0E-47 T 13-10-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 CLM_3881 9a8a48e7e8f3cbb7ce6210955bbefbf0 334 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 5 332 4.4E-147 T 13-10-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 CLM_0545 2f00e4e7bf0a4c9774a8cf334f79c0b9 189 Gene3D G3DSA:1.20.1440.20 21 187 2.3E-70 T 13-10-2018 IPR023353 LemA-like domain superfamily CLM_0545 2f00e4e7bf0a4c9774a8cf334f79c0b9 189 Pfam PF04011 LemA family 10 187 1.7E-72 T 13-10-2018 IPR007156 LemA CLM_0545 2f00e4e7bf0a4c9774a8cf334f79c0b9 189 SUPERFAMILY SSF140478 29 176 3.53E-55 T 13-10-2018 IPR023353 LemA-like domain superfamily CLM_0887 fa53f7ea6b4d1116091d39653854d06d 73 Pfam PF07872 Protein of unknown function (DUF1659) 8 51 8.6E-14 T 13-10-2018 IPR012454 Protein of unknown function DUF1659 CLM_2179 590f45f5a13c6a9e70c04bd1741bac9d 122 Pfam PF01042 Endoribonuclease L-PSP 7 121 1.5E-39 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CLM_2179 590f45f5a13c6a9e70c04bd1741bac9d 122 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 1 122 2.2E-49 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 CLM_2179 590f45f5a13c6a9e70c04bd1741bac9d 122 SUPERFAMILY SSF55298 2 122 1.05E-39 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_2179 590f45f5a13c6a9e70c04bd1741bac9d 122 Gene3D G3DSA:3.30.1330.40 1 122 1.7E-46 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CLM_0922 cd3a8574204064e23b4ea0af51d3f7ef 77 TIGRFAM TIGR04540 CLB_0814_fam: conserved hypothetical protein 2 74 4.3E-30 T 13-10-2018 IPR030902 Conserved hypothetical protein CLM_2449 64ad96fa6f5279359ff742dbd31e47c4 134 Pfam PF10990 Protein of unknown function (DUF2809) 32 115 3.7E-30 T 13-10-2018 IPR021257 Protein of unknown function DUF2809 CLM_3798 361f2921effbd3848e4eea7411373ed1 402 Pfam PF12679 ABC-2 family transporter protein 2 401 7.4E-31 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_1833 7022bc363278c8fbb89e0642478b3eda 186 Pfam PF13023 HD domain 13 171 9.8E-41 T 13-10-2018 IPR006674 HD domain CLM_1833 7022bc363278c8fbb89e0642478b3eda 186 SUPERFAMILY SSF109604 4 156 4.45E-38 T 13-10-2018 CLM_1833 7022bc363278c8fbb89e0642478b3eda 186 SMART SM00471 29 144 1.8E-4 T 13-10-2018 IPR003607 HD/PDEase domain CLM_1833 7022bc363278c8fbb89e0642478b3eda 186 Gene3D G3DSA:1.10.3210.10 2 185 2.4E-45 T 13-10-2018 CLM_1074 2129b879ba2bbc4109a5b416f1b140b8 176 SUPERFAMILY SSF55729 8 159 1.02E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1074 2129b879ba2bbc4109a5b416f1b140b8 176 Pfam PF13302 Acetyltransferase (GNAT) domain 13 152 7.0E-28 T 13-10-2018 IPR000182 GNAT domain CLM_1074 2129b879ba2bbc4109a5b416f1b140b8 176 Gene3D G3DSA:3.40.630.30 1 174 2.2E-39 T 13-10-2018 CLM_1763 b5ad6846d9d97e40ddc2e46f488781ca 180 SUPERFAMILY SSF52218 3 143 4.81E-18 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_1763 b5ad6846d9d97e40ddc2e46f488781ca 180 Pfam PF12724 Flavodoxin domain 7 142 1.7E-29 T 13-10-2018 IPR026816 Flavodoxin domain CLM_1763 b5ad6846d9d97e40ddc2e46f488781ca 180 Gene3D G3DSA:3.40.50.360 5 158 2.3E-10 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CLM_3204 291462b54a854ca3de5f6ffdafa266aa 306 SUPERFAMILY SSF101960 49 305 1.09E-41 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CLM_3204 291462b54a854ca3de5f6ffdafa266aa 306 Pfam PF01458 Uncharacterized protein family (UPF0051) 80 304 1.9E-49 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CLM_2720 9a1ab557a2cefdbbac2be2701834ac9d 326 Pfam PF01594 AI-2E family transporter 15 325 1.6E-34 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CLM_4057 629c6812d721d6c4498e79b8564187b6 182 Pfam PF13563 2'-5' RNA ligase superfamily 14 163 3.5E-10 T 13-10-2018 CLM_4057 629c6812d721d6c4498e79b8564187b6 182 SUPERFAMILY SSF55144 1 179 7.15E-22 T 13-10-2018 IPR009097 Cyclic phosphodiesterase CLM_4057 629c6812d721d6c4498e79b8564187b6 182 Gene3D G3DSA:3.90.1140.10 2 181 3.5E-17 T 13-10-2018 CLM_1728 7e79934105cfdcaf826e08aa4c01da2e 465 Pfam PF03553 Na+/H+ antiporter family 30 220 6.9E-17 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CLM_1728 7e79934105cfdcaf826e08aa4c01da2e 465 Pfam PF03553 Na+/H+ antiporter family 243 430 1.8E-5 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CLM_1272 93b96ea833fa56276f57dfc088e77a8e 92 Gene3D G3DSA:1.20.1530.20 1 92 2.6E-5 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_1272 93b96ea833fa56276f57dfc088e77a8e 92 Pfam PF03956 Lysine exporter LysO 5 82 2.8E-7 T 13-10-2018 IPR005642 Lysine exporter LysO CLM_0980 42a5988add854add3a265f67d6c7ab54 387 Pfam PF13786 Domain of unknown function (DUF4179) 35 136 1.9E-16 T 13-10-2018 IPR025436 Domain of unknown function DUF4179 CLM_1526 00665d98eb7bce6211fa73a9c022b9d2 412 Pfam PF04122 Putative cell wall binding repeat 2 64 158 5.4E-6 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_1556 8f5367c378ac78ac0c754773dcb975b5 366 Pfam PF12698 ABC-2 family transporter protein 21 355 1.0E-28 T 13-10-2018 CLM_1556 8f5367c378ac78ac0c754773dcb975b5 366 Gene3D G3DSA:3.40.1710.10 44 180 8.7E-6 T 13-10-2018 CLM_0693 3eae43c6ea4e9f1bc820c64829f2c190 165 Gene3D G3DSA:3.40.630.30 1 163 1.5E-17 T 13-10-2018 CLM_0693 3eae43c6ea4e9f1bc820c64829f2c190 165 SUPERFAMILY SSF55729 4 147 1.85E-11 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CLM_1829 231e3d196e800db638e2e0dd0164373f 472 Pfam PF13520 Amino acid permease 13 412 1.2E-63 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1829 231e3d196e800db638e2e0dd0164373f 472 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 472 3.3E-135 T 13-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CLM_1829 231e3d196e800db638e2e0dd0164373f 472 PIRSF PIRSF006060 1 472 2.6E-54 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CLM_1829 231e3d196e800db638e2e0dd0164373f 472 Gene3D G3DSA:1.20.1740.10 1 469 1.5E-64 T 13-10-2018 CLM_1449 3c350028a7c5ed381850ee9a101f6b8e 201 SUPERFAMILY SSF103473 4 199 8.63E-5 T 13-10-2018 IPR036259 MFS transporter superfamily CLM_1449 3c350028a7c5ed381850ee9a101f6b8e 201 Pfam PF02659 Putative manganese efflux pump 31 190 2.2E-54 T 13-10-2018 IPR003810 Putative manganese efflux pump CLM_1449 3c350028a7c5ed381850ee9a101f6b8e 201 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 193 25.885 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP CLM_0640 44cbec1d76c07799aff0ee9fe5fcffd9 146 Pfam PF01957 NfeD-like C-terminal, partner-binding 9 143 2.1E-19 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain CLM_0640 44cbec1d76c07799aff0ee9fe5fcffd9 146 Gene3D G3DSA:2.40.50.140 71 146 5.4E-11 T 13-10-2018 CLM_0640 44cbec1d76c07799aff0ee9fe5fcffd9 146 SUPERFAMILY SSF141322 86 144 5.23E-8 T 13-10-2018 CLM_0954 dfe91a1de340a1853de22f8e81647617 433 Pfam PF05525 Branched-chain amino acid transport protein 6 423 1.2E-122 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CLM_0954 dfe91a1de340a1853de22f8e81647617 433 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 412 1.1E-104 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CLM_3417 131b6628eb34bd94908379a4419ba3dd 447 Gene3D G3DSA:2.60.120.920 146 319 1.9E-14 T 13-10-2018 CLM_3417 131b6628eb34bd94908379a4419ba3dd 447 SUPERFAMILY SSF49899 145 300 6.01E-15 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLM_0736 ca761963615ba9df0ce2d4726e364a16 243 Pfam PF12698 ABC-2 family transporter protein 14 233 1.0E-15 T 13-10-2018 CLM_1168 27db1bdb0c1c611132f44850975e1fa4 181 Pfam PF04199 Putative cyclase 21 125 3.9E-10 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_1168 27db1bdb0c1c611132f44850975e1fa4 181 Gene3D G3DSA:3.50.30.50 19 173 3.0E-17 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_1168 27db1bdb0c1c611132f44850975e1fa4 181 SUPERFAMILY SSF102198 26 158 2.35E-22 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CLM_2767 fb143a7f07617d92e658b94c5d2b24fe 358 Gene3D G3DSA:2.40.420.10 16 97 3.5E-15 T 13-10-2018 CLM_2767 fb143a7f07617d92e658b94c5d2b24fe 358 Gene3D G3DSA:3.40.50.10690 113 358 7.9E-86 T 13-10-2018 CLM_1674 ae13fb40d3fe8bfea7d7770bbd2b9a1f 145 Pfam PF10934 Protein of unknown function (DUF2634) 31 133 1.8E-24 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 CLM_1674 ae13fb40d3fe8bfea7d7770bbd2b9a1f 145 ProDom PD033094 XKDS PHAGE-LIKE PBSX ELEMENT PHAGE LIN1286 RELATED YQBS 53 134 6.0E-8 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 CLM_0523 eb2819d817a7fc504d47d5f853cc8dfb 152 Gene3D G3DSA:3.10.180.10 1 152 3.3E-57 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0523 eb2819d817a7fc504d47d5f853cc8dfb 152 SUPERFAMILY SSF54593 1 118 4.37E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLM_0523 eb2819d817a7fc504d47d5f853cc8dfb 152 Pfam PF12681 Glyoxalase-like domain 3 121 1.5E-52 T 13-10-2018 IPR025870 Glyoxalase-like domain CLM_2507 f242eee747d57c56be6a4a67c64d4c6f 150 ProDom PD033094 XKDS PHAGE-LIKE PBSX ELEMENT PHAGE LIN1286 RELATED YQBS 51 135 3.0E-25 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 CLM_2507 f242eee747d57c56be6a4a67c64d4c6f 150 Pfam PF10934 Protein of unknown function (DUF2634) 28 133 7.1E-33 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 CLM_3663 f69232c8dcb9eb13f57a93f79a7a6058 178 Gene3D G3DSA:3.40.190.10 31 111 1.0E-5 T 13-10-2018 CLM_3663 f69232c8dcb9eb13f57a93f79a7a6058 178 Gene3D G3DSA:3.40.190.10 112 148 1.0E-5 T 13-10-2018 CLM_0191 4e0fbe651409075d76ed38ad8fa21f23 344 ProSitePatterns PS01348 MraY family signature 2. 153 164 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_0191 4e0fbe651409075d76ed38ad8fa21f23 344 Pfam PF00953 Glycosyl transferase family 4 76 233 4.3E-43 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CLM_0865 d06ac423d2d465bac77d12dbb82aef92 581 Gene3D G3DSA:3.40.50.300 352 555 3.9E-6 T 13-10-2018 CLM_2596 a540841d50de16ab61ce97db444cdcc0 278 Pfam PF00753 Metallo-beta-lactamase superfamily 25 114 1.8E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_2596 a540841d50de16ab61ce97db444cdcc0 278 SUPERFAMILY SSF56281 12 278 2.17E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_2596 a540841d50de16ab61ce97db444cdcc0 278 Gene3D G3DSA:3.60.15.10 1 278 2.4E-83 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0689 c4432c2d4c4f08615874fd12f49ac5bb 48 TIGRFAM TIGR04333 Clo7Bot_mod_Cys: Cys-rich peptide, Clo7bot family 1 38 8.8E-13 T 13-10-2018 IPR027601 Cys-rich peptide, Clo7bot family CLM_3157 daed03c834f2f269b082caae3db93f3b 171 Pfam PF04892 VanZ like family 14 135 1.3E-21 T 13-10-2018 IPR006976 VanZ-like CLM_2879 519411701b9ff526d89f3f3147663767 302 Pfam PF03547 Membrane transport protein 157 297 3.7E-16 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CLM_2879 519411701b9ff526d89f3f3147663767 302 Pfam PF03547 Membrane transport protein 5 146 3.1E-19 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CLM_2879 519411701b9ff526d89f3f3147663767 302 Gene3D G3DSA:1.20.1530.20 163 302 6.4E-7 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CLM_0581 f8d3ee047ba33e9a946663342224e3ba 380 Pfam PF12698 ABC-2 family transporter protein 21 367 3.3E-37 T 13-10-2018 CLM_2432 3e2ad1f8d03b80249c6bca2d27fd8a2f 261 Pfam PF01618 MotA/TolQ/ExbB proton channel family 103 219 2.6E-25 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CLM_2432 3e2ad1f8d03b80249c6bca2d27fd8a2f 261 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 186 203 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site CLM_1663 e878e40774288a6118152c230a5bdb41 137 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 12 94 1.1E-4 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component CLM_2444 af65bb0f36e9b51e3eb697e52d2ccbad 392 Gene3D G3DSA:3.40.1710.10 46 182 5.3E-7 T 13-10-2018 CLM_2444 af65bb0f36e9b51e3eb697e52d2ccbad 392 Pfam PF12698 ABC-2 family transporter protein 20 375 3.8E-34 T 13-10-2018 CLM_2656 f52de340963c2964e37c83a3d4679b97 114 Pfam PF05135 Phage gp6-like head-tail connector protein 1 98 8.1E-8 T 13-10-2018 IPR021146 Phage gp6-like head-tail connector protein CLM_0202 90f98c08d3ac1d74608af39952aeb56c 235 Gene3D G3DSA:3.30.360.40 163 235 5.7E-6 T 13-10-2018 CLM_0202 90f98c08d3ac1d74608af39952aeb56c 235 SUPERFAMILY SSF143842 32 231 5.23E-38 T 13-10-2018 IPR036209 YwmB-like superfamily CLM_0202 90f98c08d3ac1d74608af39952aeb56c 235 Pfam PF08680 TATA-box binding 60 235 3.0E-8 T 13-10-2018 IPR014794 TATA-box binding CLM_1302 3597f04edd96402b762142f97f1eefb6 55 Gene3D G3DSA:2.10.260.10 1 17 4.9E-5 T 13-10-2018 CLM_1704 085e64bd83c769b48a7c43dc433f58c9 91 Pfam PF02325 YGGT family 12 84 6.7E-19 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 CLM_0537 ec4db95394a64a0bff95b0a84f82b074 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 274 1.4E-44 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CLM_0468 b28f6c763782ee4a9ffbd243b350b7c5 340 SUPERFAMILY SSF144091 151 338 1.31E-45 T 13-10-2018 CLM_0468 b28f6c763782ee4a9ffbd243b350b7c5 340 Gene3D G3DSA:1.20.1540.10 147 340 1.8E-46 T 13-10-2018 IPR035952 Rhomboid-like superfamily CLM_0468 b28f6c763782ee4a9ffbd243b350b7c5 340 Pfam PF01694 Rhomboid family 198 335 1.3E-35 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CLM_0100 3a23dae9505d53391fb93951e31b9ac4 304 Pfam PF04468 PSP1 C-terminal conserved region 61 146 6.1E-34 T 13-10-2018 IPR007557 PSP1, C-terminal CLM_3216 c905272d4d268760893c700e0dab071e 314 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 17 314 5.5E-112 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 CLM_3216 c905272d4d268760893c700e0dab071e 314 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 17 229 1.3E-88 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 CLM_2313 940161c3a8609bb92325046b4935f808 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 84 3.0E-25 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CLM_2313 940161c3a8609bb92325046b4935f808 91 Gene3D G3DSA:1.20.58.1000 1 89 7.0E-27 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily CLM_1308 7524c5ee94a60c20f7370bd9b3513e3b 264 Pfam PF13240 zinc-ribbon domain 2 23 4.1E-9 T 13-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 CLM_1563 56bbbc359ecc1d02594fcd021716e9db 297 Gene3D G3DSA:1.25.40.10 27 275 2.6E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_1563 56bbbc359ecc1d02594fcd021716e9db 297 SMART SM00028 34 67 0.0017 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1563 56bbbc359ecc1d02594fcd021716e9db 297 SMART SM00028 82 115 27.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1563 56bbbc359ecc1d02594fcd021716e9db 297 SMART SM00028 131 164 25.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CLM_1563 56bbbc359ecc1d02594fcd021716e9db 297 SUPERFAMILY SSF48452 30 176 7.05E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CLM_3124 b987090ebad48a237345e2f587bbeb42 131 Pfam PF06949 Protein of unknown function (DUF1292) 67 130 2.1E-12 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 CLM_0744 7f765a1c5d5fbd794ad2a74d78784cb3 39 Pfam PF14898 Domain of unknown function (DUF4491) 1 38 1.4E-16 T 13-10-2018 IPR027890 Protein of unknown function DUF4491 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 93 108 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 PRINTS PR00175 Sodium/alanine symporter signature 182 200 5.1E-47 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 PRINTS PR00175 Sodium/alanine symporter signature 352 374 5.1E-47 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 PRINTS PR00175 Sodium/alanine symporter signature 93 115 5.1E-47 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 PRINTS PR00175 Sodium/alanine symporter signature 305 323 5.1E-47 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 PRINTS PR00175 Sodium/alanine symporter signature 210 229 5.1E-47 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 PRINTS PR00175 Sodium/alanine symporter signature 411 431 5.1E-47 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 Pfam PF01235 Sodium:alanine symporter family 57 440 2.8E-119 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_1258 433ec0964d1e3347f710b97c474c96db 465 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 438 1.5E-128 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CLM_3099 042965ccb35812a11195b4808ad18898 811 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 497 796 4.3E-37 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 CLM_3099 042965ccb35812a11195b4808ad18898 811 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 7 110 1.9E-19 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 CLM_3617 7feaf665a43b27362777962c9dd5da67 430 PIRSF PIRSF005353 1 430 1.8E-180 T 13-10-2018 IPR026033 Purine permease PbuG-like CLM_3617 7feaf665a43b27362777962c9dd5da67 430 Pfam PF00860 Permease family 17 391 3.0E-45 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CLM_0241 a240ab17693cad08ad55ca95eb92c9ea 345 Pfam PF04245 37-kD nucleoid-associated bacterial protein 13 343 2.9E-75 T 13-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 CLM_0114 f831dbc0722637ce7ed15481a4df4e0b 191 Pfam PF07670 Nucleoside recognition 42 150 3.0E-12 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CLM_2505 c9aea65a23ae63329b5fb7898ba08d69 211 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 8 151 1.4E-41 T 13-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 CLM_3880 7f45f12caf5d87092770ef1072788de6 121 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 9 116 6.0E-29 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 CLM_3880 7f45f12caf5d87092770ef1072788de6 121 SUPERFAMILY SSF141530 3 118 9.02E-39 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 CLM_3880 7f45f12caf5d87092770ef1072788de6 121 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 116 8.0E-42 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 CLM_3880 7f45f12caf5d87092770ef1072788de6 121 Gene3D G3DSA:2.40.33.40 1 120 3.3E-34 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 CLM_2292 dc11bb5377bfd5d9f712d874444b2e15 72 Pfam PF00538 linker histone H1 and H5 family 5 43 5.1E-5 T 13-10-2018 IPR005818 Linker histone H1/H5, domain H15 GO:0000786|GO:0003677|GO:0005634|GO:0006334 CLM_1467 e1578690927e9ff3c472997cdfcfee82 264 Pfam PF02517 CAAX protease self-immunity 133 220 1.7E-19 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_0318 b11185581ff8088a3a40a76ab5045e52 68 Pfam PF07870 Protein of unknown function (DUF1657) 7 55 2.5E-17 T 13-10-2018 IPR012452 Protein of unknown function DUF1657 CLM_1802 4d3bb365b9ddd520badf3bc249d3da25 139 SUPERFAMILY SSF55961 4 131 3.47E-13 T 13-10-2018 CLM_1461 4e0bc88701462942800d26801f797b50 267 Hamap MF_02077 Lipid II flippase Amj [amj]. 2 265 27.51 T 13-10-2018 IPR021260 Lipid II flippase Amj CLM_1461 4e0bc88701462942800d26801f797b50 267 Pfam PF10997 Alternate to MurJ 11 263 1.5E-97 T 13-10-2018 IPR021260 Lipid II flippase Amj CLM_2602 02d63c373da68ef269aa76318cf40bc0 50 SUPERFAMILY SSF53335 2 43 4.24E-5 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_3322 1f2644ddbbe0df02ed6cc77da927a0e9 719 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 496 700 9.2E-54 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal CLM_3322 1f2644ddbbe0df02ed6cc77da927a0e9 719 Pfam PF12698 ABC-2 family transporter protein 378 696 1.6E-13 T 13-10-2018 CLM_3322 1f2644ddbbe0df02ed6cc77da927a0e9 719 Pfam PF12698 ABC-2 family transporter protein 23 167 1.4E-10 T 13-10-2018 CLM_3322 1f2644ddbbe0df02ed6cc77da927a0e9 719 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 12 169 2.2E-46 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal CLM_1635 f22da20723b51c38b8d6de5348bd43c7 119 Gene3D G3DSA:3.40.50.300 1 118 8.7E-16 T 13-10-2018 CLM_3504 e8df1b6d7ca3ef095463744a0c3de114 410 Pfam PF04932 O-Antigen ligase 204 338 1.6E-17 T 13-10-2018 IPR007016 O-antigen ligase-related CLM_2576 3c81e16562851858385853b494473b44 144 Pfam PF06114 IrrE N-terminal-like domain 25 118 3.5E-17 T 13-10-2018 IPR010359 IrrE N-terminal-like domain CLM_3094 22858ae9fdd8880a706d6b428f130338 567 Pfam PF01973 Protein of unknown function DUF115 180 349 1.4E-46 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like CLM_1661 9c18beeddecffc399fa4b2eef6afadf5 111 Pfam PF05521 Phage head-tail joining protein 19 104 6.2E-6 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CLM_0223 564a29b6021b7a068522b5972bc77987 454 Pfam PF04389 Peptidase family M28 213 403 1.2E-40 T 13-10-2018 IPR007484 Peptidase M28 CLM_0223 564a29b6021b7a068522b5972bc77987 454 Gene3D G3DSA:3.40.630.10 133 411 2.7E-45 T 13-10-2018 CLM_0223 564a29b6021b7a068522b5972bc77987 454 SUPERFAMILY SSF53187 26 407 3.01E-50 T 13-10-2018 CLM_3549 2dce665638bdfe4872aeacfd27f9749a 523 Pfam PF16962 Putative ABC exporter 1 521 2.4E-151 T 13-10-2018 IPR031584 Putative ABC exporter CLM_3602 acef194a99abeaa4b54132e7b4b6f140 358 Gene3D G3DSA:2.40.420.10 16 97 6.5E-16 T 13-10-2018 CLM_3602 acef194a99abeaa4b54132e7b4b6f140 358 Gene3D G3DSA:3.40.50.10690 113 358 1.6E-85 T 13-10-2018 CLM_3258 a47f7de3392c974416fa2f0ec122f527 250 Pfam PF01925 Sulfite exporter TauE/SafE 8 243 7.8E-42 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_3470 701b82b22ddb16b5e2b9a82b8009563f 45 TIGRFAM TIGR03973 six_Cys_in_45: six-cysteine peptide SCIFF 2 44 2.1E-23 T 13-10-2018 IPR023975 Six-cysteine peptide SCIFF CLM_3470 701b82b22ddb16b5e2b9a82b8009563f 45 Pfam PF13165 Six-cysteine peptide SCIFF 2 45 8.3E-22 T 13-10-2018 IPR023975 Six-cysteine peptide SCIFF CLM_2868 cb086c9f21203ee93ef3750602046a5b 84 Hamap MF_01448 UPF0473 protein . 4 83 14.355 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 CLM_2868 cb086c9f21203ee93ef3750602046a5b 84 Pfam PF06949 Protein of unknown function (DUF1292) 13 81 7.1E-17 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 CLM_0821 2eb6599d6c5f81a01258b442978e0d80 85 SUPERFAMILY SSF46689 1 85 3.3E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2319 d438659873f6aa2eb2c42586db512e5c 87 Gene3D G3DSA:2.40.50.220 1 86 1.8E-28 T 13-10-2018 IPR036677 EutN/Ccml superfamily CLM_2319 d438659873f6aa2eb2c42586db512e5c 87 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 81 6.4E-26 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml CLM_2319 d438659873f6aa2eb2c42586db512e5c 87 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 12 81 9.0E-22 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml CLM_2319 d438659873f6aa2eb2c42586db512e5c 87 SUPERFAMILY SSF159133 1 82 4.58E-25 T 13-10-2018 IPR036677 EutN/Ccml superfamily CLM_0272 f0f2bd5b2116083fe708fd546a6bff2a 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 286 1.7E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CLM_2640 46abb2ec8b44af9173f435fa0cca5c48 208 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 4 140 6.5E-16 T 13-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 CLM_2017 869891878f9a24271c009d3478b65c09 248 Pfam PF02616 Segregation and condensation protein ScpA 20 242 3.5E-35 T 13-10-2018 IPR003768 Segregation and condensation protein A CLM_2017 869891878f9a24271c009d3478b65c09 248 Hamap MF_01805 Segregation and condensation protein A [scpA]. 3 245 24.55 T 13-10-2018 IPR003768 Segregation and condensation protein A CLM_3383 5d808f8c6cfbdfa669e2b2520ce1645c 108 SUPERFAMILY SSF118010 1 108 3.66E-31 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily CLM_3383 5d808f8c6cfbdfa669e2b2520ce1645c 108 Pfam PF04327 Cysteine protease Prp 1 102 3.5E-26 T 13-10-2018 IPR007422 Cysteine protease Prp CLM_3383 5d808f8c6cfbdfa669e2b2520ce1645c 108 Gene3D G3DSA:3.30.70.1490 1 107 1.6E-31 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily CLM_3774 2f8ba9ed0fdbafec43896e745b7977e1 91 TIGRFAM TIGR04116 CXXX_rpt_assoc: CXXX repeat peptide modification system protein 6 89 2.0E-25 T 13-10-2018 IPR026413 CXXX repeat peptide modification system protein CLM_2466 9cea6d65521e90f4a3db8a6318c35705 90 SUPERFAMILY SSF46689 1 89 4.12E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CLM_2466 9cea6d65521e90f4a3db8a6318c35705 90 Pfam PF08765 Mor transcription activator family 16 88 5.3E-6 T 13-10-2018 IPR014875 Mor transcription activator CLM_4070 fa3b0cb918e59f204fe7788e9186e67f 179 Gene3D G3DSA:3.40.109.10 1 179 1.5E-62 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_4070 fa3b0cb918e59f204fe7788e9186e67f 179 SUPERFAMILY SSF55469 3 179 1.31E-57 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CLM_4070 fa3b0cb918e59f204fe7788e9186e67f 179 Pfam PF00881 Nitroreductase family 5 157 4.7E-33 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CLM_3727 188661044168373abe55501276f7fcb4 446 Pfam PF05525 Branched-chain amino acid transport protein 7 431 3.5E-112 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CLM_3727 188661044168373abe55501276f7fcb4 446 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 418 7.2E-97 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CLM_1348 3976665fffddd7662494525278472104 491 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 12 461 2.4E-118 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 CLM_1348 3976665fffddd7662494525278472104 491 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 10 477 44.921 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 CLM_2471 e0f74cd1b366aae37ee55a802f87b1d7 198 Gene3D G3DSA:3.30.1450.10 53 124 8.2E-6 T 13-10-2018 IPR037873 BamE-like CLM_2471 e0f74cd1b366aae37ee55a802f87b1d7 198 Gene3D G3DSA:3.30.1450.10 127 198 8.7E-6 T 13-10-2018 IPR037873 BamE-like CLM_2471 e0f74cd1b366aae37ee55a802f87b1d7 198 Pfam PF12978 Domain of Unknown Function with PDB structure (DUF3862) 63 197 1.7E-10 T 13-10-2018 IPR024418 Protein of unknown function DUF3862 CLM_0638 ea002025d7669ea6a14597e339e8a29e 141 Gene3D G3DSA:1.20.120.490 25 141 2.5E-31 T 13-10-2018 IPR024042 TM1646-like domain superfamily CLM_0638 ea002025d7669ea6a14597e339e8a29e 141 Pfam PF03885 Protein of unknown function (DUF327) 13 140 3.9E-39 T 13-10-2018 IPR005585 Protein of unknown function DUF327 CLM_0638 ea002025d7669ea6a14597e339e8a29e 141 SUPERFAMILY SSF158397 26 140 4.05E-35 T 13-10-2018 IPR024042 TM1646-like domain superfamily CLM_0169 a1ff4fa3313f08c89207facc0fba7f48 210 TIGRFAM TIGR02837 spore_II_R: stage II sporulation protein R 3 168 5.6E-68 T 13-10-2018 IPR014202 Sporulation stage II, protein R CLM_0169 a1ff4fa3313f08c89207facc0fba7f48 210 Pfam PF09551 Stage II sporulation protein R (spore_II_R) 38 163 2.4E-52 T 13-10-2018 IPR014202 Sporulation stage II, protein R CLM_4077 ea75ef4511b3bb039a152ce236a1c05f 457 Pfam PF00474 Sodium:solute symporter family 31 415 1.3E-22 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CLM_4077 ea75ef4511b3bb039a152ce236a1c05f 457 Gene3D G3DSA:1.20.1730.10 18 456 1.2E-48 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CLM_0564 7d0002996d8cf048c156414c8688d9b2 47 Pfam PF03837 RecT family 1 42 1.3E-7 T 13-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 CLM_2487 171b12e22b84a39b75a8b155eacd2f95 703 Gene3D G3DSA:3.40.50.300 508 665 2.6E-5 T 13-10-2018 CLM_2487 171b12e22b84a39b75a8b155eacd2f95 703 SUPERFAMILY SSF52540 288 651 2.06E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_3360 887680dee494e5618a227b9ac782414b 363 Pfam PF07454 Stage II sporulation protein P (SpoIIP) 93 358 1.7E-82 T 13-10-2018 IPR010897 Sporulation stage II, protein P CLM_3360 887680dee494e5618a227b9ac782414b 363 TIGRFAM TIGR02867 spore_II_P: stage II sporulation protein P 171 362 2.1E-73 T 13-10-2018 IPR010897 Sporulation stage II, protein P CLM_1292 3d43331d911732e513cbd12d959e163a 154 Gene3D G3DSA:1.20.1260.10 2 151 6.7E-6 T 13-10-2018 IPR012347 Ferritin-like CLM_3752 a1308e1b0021b8024fd6d24b7cb5bdf7 128 Pfam PF17032 zinc-ribbon family 23 123 3.8E-25 T 13-10-2018 IPR031493 Zinc-ribbon 15 CLM_3823 5ef84ab607a605378ff40e2a93ee470c 173 Gene3D G3DSA:3.40.430.10 2 173 1.3E-36 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CLM_3823 5ef84ab607a605378ff40e2a93ee470c 173 Pfam PF01872 RibD C-terminal domain 4 158 5.7E-19 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CLM_3823 5ef84ab607a605378ff40e2a93ee470c 173 SUPERFAMILY SSF53597 4 170 1.2E-28 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CLM_2194 07ba448d0cac227bcf603452cf11d556 362 Pfam PF03845 Spore germination protein 8 320 3.4E-67 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_2194 07ba448d0cac227bcf603452cf11d556 362 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 8 356 7.3E-68 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 CLM_2187 57ba27fdc09946b9f13882d626be1bd6 271 Pfam PF02596 Uncharacterised ArCR, COG2043 29 238 2.0E-51 T 13-10-2018 IPR003748 Protein of unknown function DUF169 CLM_2617 91e392b3fdf0dd09682def121e242cfc 336 Pfam PF10127 Predicted nucleotidyltransferase 6 174 2.0E-27 T 13-10-2018 IPR018775 Nucleotidyltransferase, predicted CLM_3416 946c231abb5fd150a0fe8484880c4326 269 Gene3D G3DSA:2.60.120.260 10 157 2.7E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CLM_3416 946c231abb5fd150a0fe8484880c4326 269 SUPERFAMILY SSF49785 28 148 5.96E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CLM_1515 e500faded90e62eaa77a955552162e70 332 Pfam PF01032 FecCD transport family 14 328 3.1E-98 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CLM_1515 e500faded90e62eaa77a955552162e70 332 SUPERFAMILY SSF81345 4 328 2.75E-84 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1515 e500faded90e62eaa77a955552162e70 332 Gene3D G3DSA:1.10.3470.10 1 332 1.5E-103 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CLM_1431 6fc0d02a979b19f5c74f9ad722d81667 119 Pfam PF06305 Lipopolysaccharide assembly protein A domain 21 82 1.2E-12 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 CLM_1096 226b603f36334668b0b4b892e48f32ad 130 Pfam PF15592 Immunity protein 41 7 119 1.4E-19 T 13-10-2018 IPR028959 Immunity protein 41 CLM_1441 4a8ad27d8e29b53f9a4371e7bf666858 181 Pfam PF11167 Protein of unknown function (DUF2953) 105 141 3.3E-5 T 13-10-2018 IPR021338 Protein of unknown function DUF2953 CLM_0741 c820626cfdb576bdfd8baa521ba1c304 116 Pfam PF14198 Transposon-encoded protein TnpV 7 114 9.8E-23 T 13-10-2018 IPR026989 Transposon-encoded protein TnpV CLM_3586 ae06e986f4fbb858d04db589f181b33a 311 Pfam PF02631 RecX family 88 205 5.4E-23 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CLM_3586 ae06e986f4fbb858d04db589f181b33a 311 Pfam PF02631 RecX family 235 304 1.7E-4 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CLM_3586 ae06e986f4fbb858d04db589f181b33a 311 Gene3D G3DSA:1.10.10.10 109 149 8.7E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CLM_3586 ae06e986f4fbb858d04db589f181b33a 311 Hamap MF_01114 Regulatory protein RecX [recX]. 43 210 15.409 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CLM_3586 ae06e986f4fbb858d04db589f181b33a 311 Gene3D G3DSA:1.10.10.2800 2 108 5.2E-28 T 13-10-2018 CLM_0407 f4634ed01392d0a9777dafdbdb2ca584 44 TIGRFAM TIGR04223 quorum_AgrD: cyclic lactone autoinducer peptide 8 44 2.1E-14 T 13-10-2018 IPR009229 Staphylococcal AgrD CLM_4099 c669cc33048b84a3d04b3fbf5dffbb68 311 Gene3D G3DSA:2.70.70.10 165 311 1.4E-47 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_4099 c669cc33048b84a3d04b3fbf5dffbb68 311 Pfam PF01551 Peptidase family M23 212 306 8.4E-36 T 13-10-2018 IPR016047 Peptidase M23 CLM_4099 c669cc33048b84a3d04b3fbf5dffbb68 311 SUPERFAMILY SSF51261 119 310 3.35E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif CLM_0101 4ca83389c46fc7a478884e85b4afedff 67 Pfam PF00403 Heavy-metal-associated domain 17 65 5.6E-7 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CLM_0101 4ca83389c46fc7a478884e85b4afedff 67 SUPERFAMILY SSF55008 1 66 5.89E-12 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CLM_0101 4ca83389c46fc7a478884e85b4afedff 67 Gene3D G3DSA:3.30.70.100 2 67 1.1E-10 T 13-10-2018 CLM_4022 6af666218eff27b70f0b53c6f1098e12 89 Pfam PF04977 Septum formation initiator 11 84 1.1E-19 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC CLM_1903 0043f7ada866d43cdffd849397158574 277 Pfam PF06161 Protein of unknown function (DUF975) 8 265 9.4E-47 T 13-10-2018 IPR010380 Protein of unknown function DUF975 CLM_3311 d9657a0fede0df0609a2cd9d74ad46f6 229 Pfam PF13346 ABC-2 family transporter protein 6 220 7.1E-19 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like CLM_1523 d4a6fb2b247e8f4af66b787e7cef663a 202 Pfam PF06475 Putative glycolipid-binding 14 194 3.5E-56 T 13-10-2018 IPR009467 Putative glycolipid-binding protein CLM_1523 d4a6fb2b247e8f4af66b787e7cef663a 202 SUPERFAMILY SSF159275 12 195 1.83E-54 T 13-10-2018 CLM_0623 e1b4e15fabaf8ad457141c7d4fdda3c0 836 Pfam PF02687 FtsX-like permease family 735 818 6.8E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0623 e1b4e15fabaf8ad457141c7d4fdda3c0 836 Pfam PF02687 FtsX-like permease family 291 384 4.7E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_1799 ed13cad7c049ece6081b279d712fd12d 272 Pfam PF02517 CAAX protease self-immunity 134 220 2.3E-20 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_1223 f1177ae1384b4c7f646d6900b7a92d04 117 Pfam PF08239 Bacterial SH3 domain 63 112 1.5E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_1223 f1177ae1384b4c7f646d6900b7a92d04 117 Gene3D G3DSA:2.30.30.40 57 114 3.1E-15 T 13-10-2018 CLM_1223 f1177ae1384b4c7f646d6900b7a92d04 117 SMART SM00287 54 117 8.5E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CLM_1751 43a46449078d9e710d94f3d1e7cc9a21 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 292 1.4E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CLM_1751 43a46449078d9e710d94f3d1e7cc9a21 297 SUPERFAMILY SSF161098 56 284 1.44E-61 T 13-10-2018 IPR035906 MetI-like superfamily CLM_1751 43a46449078d9e710d94f3d1e7cc9a21 297 Gene3D G3DSA:1.10.3720.10 54 295 1.4E-74 T 13-10-2018 IPR035906 MetI-like superfamily CLM_2752 3ba70891344a87472111b54957509c21 166 Pfam PF02620 Uncharacterized ACR, COG1399 56 162 2.0E-27 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CLM_1137 f2d585804ad9c30d1849a779cff5f723 67 Pfam PF12663 Protein of unknown function (DUF3788) 3 58 3.8E-11 T 13-10-2018 IPR024265 Protein of unknown function DUF3788 CLM_1089 ede8bc064d9e033ed89e41b91e0531d5 126 Pfam PF13630 SdpI/YhfL protein family 32 108 1.3E-20 T 13-10-2018 IPR025962 SdpI/YhfL protein family CLM_2620 697f7f97e628798fec6d2529fe184db5 54 SUPERFAMILY SSF50044 9 51 7.48E-5 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 CLM_0559 0c88e039a817a68e4f829aa0cdb4001d 53 Pfam PF07561 Domain of Unknown Function (DUF1540) 7 49 6.7E-13 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 CLM_1917 b54aec66088d1eccdf03639bf070beb5 316 Pfam PF06207 Protein of unknown function (DUF1002) 39 258 1.8E-85 T 13-10-2018 IPR009343 Protein of unknown function DUF1002 CLM_0431 d4d26ee7b560a43dbb255a3c67fb1c20 336 Pfam PF03601 Conserved hypothetical protein 698 9 315 8.5E-87 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 CLM_3772 37736aec1698a5e24f98f91de6e37e23 378 Pfam PF12679 ABC-2 family transporter protein 6 376 4.4E-20 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_0290 8f8e809adfb1bbc7e95c600293f4a1d8 69 SUPERFAMILY SSF51395 9 65 5.7E-7 T 13-10-2018 CLM_0290 8f8e809adfb1bbc7e95c600293f4a1d8 69 Gene3D G3DSA:3.20.20.70 6 69 9.3E-10 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CLM_1672 c39252902b848c521eafa63bd15614a6 310 SUPERFAMILY SSF69279 23 147 2.93E-7 T 13-10-2018 CLM_0442 f3ee9778467bfa0cf973946afa693c3c 362 Gene3D G3DSA:3.40.50.12090 57 159 2.7E-5 T 13-10-2018 CLM_0442 f3ee9778467bfa0cf973946afa693c3c 362 Pfam PF04122 Putative cell wall binding repeat 2 246 346 2.7E-14 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0442 f3ee9778467bfa0cf973946afa693c3c 362 Pfam PF04122 Putative cell wall binding repeat 2 34 122 1.7E-16 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_0442 f3ee9778467bfa0cf973946afa693c3c 362 Pfam PF04122 Putative cell wall binding repeat 2 144 230 1.1E-11 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 CLM_2997 b286df353c09106cf69617fd8b129c3d 191 SUPERFAMILY SSF53335 34 111 1.65E-8 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLM_2997 b286df353c09106cf69617fd8b129c3d 191 Gene3D G3DSA:3.40.50.150 22 180 1.3E-7 T 13-10-2018 CLM_2021 6fb04acea14c098b5e706716c589d171 240 Pfam PF12787 EcsC protein family 9 236 1.7E-68 T 13-10-2018 IPR024787 EcsC protein CLM_2021 6fb04acea14c098b5e706716c589d171 240 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 1 235 1.0E-44 T 13-10-2018 CLM_3220 5c3b83802ebf9a3cebe45225ea931095 189 SUPERFAMILY SSF53448 4 184 4.28E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_3220 5c3b83802ebf9a3cebe45225ea931095 189 Pfam PF12804 MobA-like NTP transferase domain 5 143 1.2E-26 T 13-10-2018 IPR025877 MobA-like NTP transferase CLM_3220 5c3b83802ebf9a3cebe45225ea931095 189 Gene3D G3DSA:3.90.550.10 1 185 3.5E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CLM_1572 dc81e80364fa4855d66d5daf399ad195 602 PIRSF PIRSF018968 1 602 5.1E-61 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 CLM_3491 ded3c12e9155e341e35dc6bfef4f33e8 151 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 29 144 6.3E-41 T 13-10-2018 IPR005562 SpoVA CLM_3491 ded3c12e9155e341e35dc6bfef4f33e8 151 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 11 148 2.4E-60 T 13-10-2018 IPR014203 Sporulation stage V, protein AC CLM_0095 eebfe9bcf10d5ca889039f10733804bb 70 Pfam PF10764 Inhibitor of sigma-G Gin 6 50 1.5E-16 T 13-10-2018 IPR019700 Anti-sigma-G factor Gin CLM_0426 69408c6fe12262f355e8005f5c9115ee 395 Pfam PF12671 Putative amidase domain 215 391 1.2E-46 T 13-10-2018 IPR024301 Putative amidase domain CLM_1342 0d3ef8d3134d04b3aa677f7e48989e87 247 Pfam PF12730 ABC-2 family transporter protein 5 180 1.3E-11 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_0604 19f6e3e6084028909e6ef1baf0f8010f 63 SUPERFAMILY SSF47240 3 61 1.62E-5 T 13-10-2018 IPR009078 Ferritin-like superfamily CLM_0604 19f6e3e6084028909e6ef1baf0f8010f 63 Gene3D G3DSA:1.20.1260.10 2 62 3.8E-5 T 13-10-2018 IPR012347 Ferritin-like CLM_2049 d9c5b32bffee9698e0db6275487dcb8a 193 TIGRFAM TIGR01603 maj_tail_phi13: phage major tail protein, phi13 family 9 186 6.8E-35 T 13-10-2018 IPR006490 Phage major tail protein, phi13 family CLM_3242 a914c7267ec3e52adf597fba156f689c 179 Pfam PF12642 Conjugative transposon protein TcpC 5 167 8.1E-40 T 13-10-2018 IPR024735 Conjugative transposon protein TcpC CLM_3251 7401f7ac76007b1dff9b811143e235a0 376 TIGRFAM TIGR04066 nat_prod_clost: peptide maturation system protein, TIGR04066 family 6 369 5.2E-149 T 13-10-2018 IPR023823 Conserved hypothetical protein CHP04066, peptide maturation system CLM_3251 7401f7ac76007b1dff9b811143e235a0 376 SUPERFAMILY SSF52540 35 200 6.9E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLM_0910 679031bd33de151c91baebb22392dfde 67 Pfam PF13783 Domain of unknown function (DUF4177) 3 62 2.4E-9 T 13-10-2018 IPR025234 Protein of unknown function DUF4177 CLM_0299 a85ca79197a71b0966cc734532c140e7 218 SUPERFAMILY SSF51182 81 198 8.71E-24 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CLM_0299 a85ca79197a71b0966cc734532c140e7 218 Gene3D G3DSA:2.60.120.10 93 218 3.5E-43 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CLM_0299 a85ca79197a71b0966cc734532c140e7 218 Pfam PF07883 Cupin domain 118 193 1.1E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CLM_1555 0acf8960eeac1dcbbce22a1ff9194311 392 Pfam PF12698 ABC-2 family transporter protein 21 379 3.3E-24 T 13-10-2018 CLM_0934 71af9d23b24f4595968b00b8d2baea65 898 Pfam PF02687 FtsX-like permease family 333 427 3.6E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_0934 71af9d23b24f4595968b00b8d2baea65 898 Pfam PF02687 FtsX-like permease family 798 889 8.4E-13 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CLM_2435 ddb1b1ba1010d61f4ada964175804349 207 Gene3D G3DSA:2.60.40.1240 79 207 3.3E-30 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLM_2435 ddb1b1ba1010d61f4ada964175804349 207 Pfam PF11611 Domain of unknown function (DUF4352) 80 200 2.1E-27 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 CLM_3452 0cf1e33785671c343f02721fcb060a07 483 SUPERFAMILY SSF52266 50 314 8.74E-10 T 13-10-2018 CLM_0647 c0a3fc4bbf18d22e89b83643a0b71c3a 70 Pfam PF04324 BFD-like [2Fe-2S] binding domain 16 67 1.7E-13 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CLM_0647 c0a3fc4bbf18d22e89b83643a0b71c3a 70 Gene3D G3DSA:1.10.10.1100 3 70 6.9E-16 T 13-10-2018 CLM_3669 0c000a38172fe1f6e2bfbbc6c5168a57 363 Pfam PF03773 Predicted permease 15 301 2.1E-53 T 13-10-2018 IPR005524 Predicted permease DUF318 CLM_0853 f28b61b3cfc29e5ae725d15ea915c000 235 Pfam PF07505 Protein of unknown function (DUF5131) 3 213 1.7E-43 T 13-10-2018 IPR011101 Protein of unknown function DUF5131 CLM_0781 e5d36b6a191fe28ac7c048d12839a83f 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 5 267 2.2E-26 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CLM_3215 fcaa0f94aeb1fb7c6c5ecfbbbe5799a3 268 Pfam PF03609 PTS system sorbose-specific iic component 5 239 2.2E-69 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 CLM_0791 d49ae41e801c66a40ce3b96f95dd1c82 250 SUPERFAMILY SSF69318 25 209 9.68E-9 T 13-10-2018 CLM_2859 523894de132c80d3c71e6778f8508b23 50 Gene3D G3DSA:1.10.443.10 1 50 8.9E-7 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CLM_0294 02ae4ff0341d04bdaae39820b6143deb 538 SUPERFAMILY SSF48317 41 535 1.64E-114 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLM_0294 02ae4ff0341d04bdaae39820b6143deb 538 Pfam PF01569 PAP2 superfamily 359 514 2.4E-8 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLM_0294 02ae4ff0341d04bdaae39820b6143deb 538 Gene3D G3DSA:1.10.606.10 16 538 5.3E-182 T 13-10-2018 IPR016119 Bromoperoxidase/chloroperoxidase C-terminal GO:0004601|GO:0055114 CLM_3113 090749bc5be91f6869c1a7741924d36b 199 Pfam PF04509 CheC-like family 104 141 1.0E-10 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 CLM_3113 090749bc5be91f6869c1a7741924d36b 199 Pfam PF04509 CheC-like family 10 46 7.2E-15 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 CLM_3113 090749bc5be91f6869c1a7741924d36b 199 SUPERFAMILY SSF103039 4 198 5.23E-57 T 13-10-2018 IPR028976 CheC-like superfamily CLM_3113 090749bc5be91f6869c1a7741924d36b 199 Gene3D G3DSA:3.40.1550.10 5 199 9.1E-61 T 13-10-2018 IPR028976 CheC-like superfamily CLM_1922 6c1e54ec94f2d26615f7597c105cd0f9 60 SUPERFAMILY SSF100950 4 52 1.36E-5 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CLM_0675 bf0125d12862de8f91ccdbcaef3d2048 60 Pfam PF12645 Helix-turn-helix domain 6 46 7.4E-8 T 13-10-2018 IPR024760 Helix-turn-helix, conjugative transposon-like CLM_2675 bd96849565c3a23d6d25a916662e0f49 381 Pfam PF10926 Protein of unknown function (DUF2800) 4 371 5.4E-149 T 13-10-2018 IPR021229 Protein of unknown function DUF2800 CLM_1645 5dc98e599248dacffae6049ee6d5a996 349 Pfam PF04245 37-kD nucleoid-associated bacterial protein 13 343 8.8E-72 T 13-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 CLM_1927 3af19f58f7bfaea9d7c863c8202e5b48 177 Pfam PF12671 Putative amidase domain 11 172 4.1E-32 T 13-10-2018 IPR024301 Putative amidase domain CLM_0484 be1f213e8de665db882302d1b7c54501 371 SUPERFAMILY SSF54001 68 186 3.34E-6 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CLM_0813 02ba716a3a0698667164c6e71edd935c 469 Pfam PF14199 Domain of unknown function (DUF4317) 1 465 5.4E-157 T 13-10-2018 IPR025466 Protein of unknown function DUF4317 CLM_1301 6f83de488ee113230db8c84c07dd3f12 579 SUPERFAMILY SSF53795 345 576 3.89E-16 T 13-10-2018 CLM_1299 4b75ac014420815212e891ba4bd44009 367 Pfam PF01594 AI-2E family transporter 29 359 3.5E-66 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CLM_0494 6111d8c8e0eb58a31ed3d253fd2eb34f 287 Pfam PF00753 Metallo-beta-lactamase superfamily 48 243 2.5E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_0494 6111d8c8e0eb58a31ed3d253fd2eb34f 287 SUPERFAMILY SSF56281 38 285 7.08E-63 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0494 6111d8c8e0eb58a31ed3d253fd2eb34f 287 Gene3D G3DSA:3.60.15.10 37 286 7.1E-80 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLM_0494 6111d8c8e0eb58a31ed3d253fd2eb34f 287 SMART SM00849 50 244 3.0E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase CLM_2458 8041a4df9fc0f53452b4bea616f26b12 130 TIGRFAM TIGR03987 TIGR03987: TIGR03987 family protein 5 129 8.4E-55 T 13-10-2018 IPR023813 Conserved hypothetical protein CHP03987 CLM_3142 1c51e7461a881ee8a5e4190c441dff96 78 Pfam PF02344 Myc leucine zipper domain 50 75 3.7E-5 T 13-10-2018 IPR003327 Leucine zipper, Myc GO:0003700|GO:0005634|GO:0006355 Reactome: R-HSA-1362277|Reactome: R-HSA-2122947|Reactome: R-HSA-2173796|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862|Reactome: R-HSA-4411364|Reactome: R-HSA-5687128|Reactome: R-HSA-5689880|Reactome: R-HSA-6785807|Reactome: R-HSA-69202|Reactome: R-HSA-69656|Reactome: R-HSA-8866911|Reactome: R-HSA-8951430|Reactome: R-HSA-9018519 CLM_0297 676dbdedcaab1afb47bb92c60c746fbd 250 Pfam PF12730 ABC-2 family transporter protein 4 181 2.8E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_2384 01511e2009402ffc2684d2f290fb01ee 150 Pfam PF12638 Staygreen protein 3 146 1.1E-56 T 13-10-2018 IPR024438 Staygreen protein CLM_2755 e23883f05768646d4889090b1a2a1899 292 Pfam PF01925 Sulfite exporter TauE/SafE 5 148 5.2E-10 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_2755 e23883f05768646d4889090b1a2a1899 292 Pfam PF01925 Sulfite exporter TauE/SafE 172 285 3.7E-8 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_3665 a823903579322eb2efdf2b3c1396b4df 46 Pfam PF03243 Alkylmercury lyase 1 40 1.4E-4 T 13-10-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 CLM_1287 fb234f0d70930dcddabbec84cc4ca99a 504 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 48 487 4.8E-145 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 CLM_1287 fb234f0d70930dcddabbec84cc4ca99a 504 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 10 486 2.2E-176 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 CLM_1196 bc4ca768817bbc7ec6f6cf45c9f60cd1 78 Pfam PF09851 Short C-terminal domain 51 74 2.9E-6 T 13-10-2018 IPR018649 SHOCT domain CLM_0888 34fc89dc49eeff844dbdabce8ca1b11f 75 Pfam PF11148 Protein of unknown function (DUF2922) 5 71 1.5E-22 T 13-10-2018 IPR021321 Protein of unknown function DUF2922 CLM_1094 7f5a5babc21f8c3aabd07bcca6b97154 113 Gene3D G3DSA:3.30.1390.10 72 113 1.3E-6 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CLM_3153 317685b38e74a5eca6ed65e08df9ba13 232 Pfam PF04892 VanZ like family 45 181 1.2E-22 T 13-10-2018 IPR006976 VanZ-like CLM_1832 d841240f7a8beb3bcd725ec8c6d9e982 46 SUPERFAMILY SSF52172 2 43 4.69E-6 T 13-10-2018 IPR011006 CheY-like superfamily CLM_2605 924c4692844a85790c33029db9314b20 457 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 67 223 4.6E-10 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like CLM_1394 40fdd1e9cdfc82282394213c6e8d9c0a 48 SUPERFAMILY SSF140500 3 44 6.15E-9 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 CLM_1394 40fdd1e9cdfc82282394213c6e8d9c0a 48 Pfam PF09388 Spo0E like sporulation regulatory protein 6 43 3.7E-10 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 CLM_3432 871eaf94dbb5f170bd62cd2df131e318 361 SUPERFAMILY SSF69279 33 188 3.17E-8 T 13-10-2018 CLM_2506 ced498d49e636b8dd2683fe6c65f4291 376 Pfam PF04865 Baseplate J-like protein 71 333 8.7E-71 T 13-10-2018 IPR006949 Baseplate protein J-like CLM_1187 9afb8ab9849f6bf5114ad9afff625ca7 48 Pfam PF12669 Virus attachment protein p12 family 2 42 2.4E-10 T 13-10-2018 CLM_0965 b0c6eefa48d8420244eb737d2894bf86 93 Pfam PF14898 Domain of unknown function (DUF4491) 2 92 9.7E-35 T 13-10-2018 IPR027890 Protein of unknown function DUF4491 CLM_3527 8e2552e645c0688df8666927c167d574 156 Pfam PF04463 Protein of unknown function (DUF523) 2 145 5.8E-44 T 13-10-2018 IPR007553 Domain of unknown function DUF523 CLM_1654 5b87ab9dd369b040065b169da18905c4 120 Pfam PF01844 HNH endonuclease 56 94 2.0E-6 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 CLM_2635 e7062c1c14785e3d103de3c4a10bb064 155 Gene3D G3DSA:2.60.120.380 45 152 7.1E-6 T 13-10-2018 CLM_3656 2113aba8dd01df563f954861704e687c 65 Pfam PF11823 Protein of unknown function (DUF3343) 1 54 1.5E-15 T 13-10-2018 IPR021778 Domain of unknown function DUF3343 CLM_2926 31bf057a353699e85d6f0a6e07d6248a 193 TIGRFAM TIGR01603 maj_tail_phi13: phage major tail protein, phi13 family 9 186 5.9E-35 T 13-10-2018 IPR006490 Phage major tail protein, phi13 family CLM_3253 f8c9609976ce9e1715723fd8699d0422 60 TIGRFAM TIGR04065 ocin_CLI_3235: putative bacteriocin precursor, CLI_3235 family 1 33 7.5E-18 T 13-10-2018 IPR023968 Bacteriocin precursor, CLI3235 family, putative CLM_4129 ef9ddaa75ec820cb3b0b4f299a12580d 334 Pfam PF09991 Predicted membrane protein (DUF2232) 19 313 9.3E-76 T 13-10-2018 IPR018710 Protein of unknown function DUF2232 CLM_0928 2cc89d5d1bc1983f1f292c21366fa0a0 263 Pfam PF12730 ABC-2 family transporter protein 4 203 2.2E-14 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_1525 3febdfd58990f07f0ce414d2714cb39a 623 Pfam PF14342 Domain of unknown function (DUF4396) 466 619 9.3E-30 T 13-10-2018 IPR025509 Domain of unknown function DUF4396 CLM_2012 54539a54f788dd02c9478f88d0e31c5b 364 Pfam PF01594 AI-2E family transporter 27 356 5.6E-67 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CLM_1420 d18514f0552dc6831ad71ab8952b7b06 43 Pfam PF04723 Glycine reductase complex selenoprotein A 4 43 7.6E-19 T 13-10-2018 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 CLM_0572 948c66386ed819d9cb66132c37a81c49 57 TIGRFAM TIGR03602 streptolysinS: bacteriocin protoxin, streptolysin S family 1 56 2.6E-33 T 13-10-2018 IPR019891 Bacteriocin, streptolysin S, precursor CLM_0673 a3da2018393eb7efdfb8a330471e8ef7 184 Pfam PF14317 YcxB-like protein 104 166 1.8E-6 T 13-10-2018 IPR025588 YcxB-like protein CLM_0653 617394df1c553a0fcebf25099e8a2b6f 229 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 125 203 1.5E-7 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF CLM_1155 0559a9f53d23dfec2c5f75b8a664811c 71 Pfam PF11211 Protein of unknown function (DUF2997) 5 52 1.3E-21 T 13-10-2018 IPR021375 Protein of unknown function DUF2997 CLM_3050 74bccfb8a917bbad909dfbd1283dc012 225 Pfam PF02397 Bacterial sugar transferase 31 219 1.8E-66 T 13-10-2018 IPR003362 Bacterial sugar transferase CLM_0711 56ccb71d4bcf719d62994afa6b080f98 303 Pfam PF02517 CAAX protease self-immunity 149 243 7.4E-9 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CLM_2051 cafa7483cf17e41b789e811f38df55fb 119 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 8 115 1.1E-10 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component CLM_2330 b433dd9fc73f7688529b49809fb6229f 88 SUPERFAMILY SSF46785 3 86 8.5E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CLM_2783 3af77e22717393097f2c67fcc6068280 175 Pfam PF03773 Predicted permease 41 169 2.2E-14 T 13-10-2018 IPR005524 Predicted permease DUF318 CLM_2922 b75db52273c823b4d959f8559d19f293 289 Pfam PF05709 Phage tail protein 28 287 2.1E-37 T 13-10-2018 IPR008841 Siphovirus-type tail component CLM_2144 05b256ffddd00ed0d960223fd216a8ee 258 Pfam PF12730 ABC-2 family transporter protein 4 180 2.5E-7 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 CLM_2808 9479ed3e79457be26481132791ad6ee4 238 Pfam PF04298 Putative neutral zinc metallopeptidase 19 232 2.3E-92 T 13-10-2018 IPR007395 Putative neutral zinc metallopeptidase CLM_4130 d519d23ffd4b2de26353ba1d79f1d42d 105 Pfam PF12643 MazG-like family 8 94 9.1E-26 T 13-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 CLM_2045 bf39ea1851811018cac48746089b20f3 289 Pfam PF05709 Phage tail protein 28 287 1.7E-37 T 13-10-2018 IPR008841 Siphovirus-type tail component CLM_0592 67a85a05090227928254a5dc8c72e8a8 87 Pfam PF13031 Protein of unknown function (DUF3892) 12 79 1.4E-11 T 13-10-2018 IPR024997 Protein of unknown function DUF3892 CLM_0672 540f14c09c3adc92a95b20e146849083 109 Pfam PF14317 YcxB-like protein 29 91 6.3E-7 T 13-10-2018 IPR025588 YcxB-like protein CLM_2769 a487ab294a172f8746b487b3df9dafbc 295 Pfam PF01925 Sulfite exporter TauE/SafE 3 148 1.4E-11 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_2769 a487ab294a172f8746b487b3df9dafbc 295 Pfam PF01925 Sulfite exporter TauE/SafE 172 285 2.5E-8 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CLM_3415 76bca45ca59ad7d99f88e7af035f5e02 84 Pfam PF10779 Haemolysin XhlA 13 78 1.7E-22 T 13-10-2018 IPR019715 Haemolysin XhlA CLM_0884 497dfa34bdb183000bf649cdab496511 59 Pfam PF12841 YvrJ protein family 8 42 1.7E-18 T 13-10-2018 IPR024419 Protein of unknown function YvrJ CLM_1293 0c9d6838ce1118bd2837e813fef859a7 66 Pfam PF14056 Domain of unknown function (DUF4250) 11 63 4.4E-22 T 13-10-2018 IPR025346 Protein of unknown function DUF4250 CLM_3846 956a53afc9292e4d9dee4fb1e7ff5eae 409 Pfam PF01098 Cell cycle protein 74 407 2.0E-81 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CLM_1387 16e931729d70bc55ee1c9e4a0808157c 339 Pfam PF09992 Phosphodiester glycosidase 157 337 5.1E-48 T 13-10-2018 IPR018711 Phosphodiester glycosidase CLM_2972 07a5e730d3decbd0d1ff67b3c9b7e52d 245 Pfam PF09335 SNARE associated Golgi protein 76 193 1.6E-27 T 13-10-2018 IPR032816 SNARE associated Golgi protein CLM_1822 2339e39089e28e9b6106d0f3d76d4ddb 418 Pfam PF04143 Sulphur transport 46 406 5.4E-77 T 13-10-2018 IPR007272 Sulphur transport domain CLM_1401 d86d9316548f776b06333cec843596f6 230 Pfam PF12730 ABC-2 family transporter protein 26 186 1.1E-7 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085