locus-tag class description NPD12_10 PF01195 Peptidyl-tRNA hydrolase NPD12_100 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_100 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_1000 PF05525 Branched-chain amino acid transport protein NPD12_1001 PF02743 Cache domain NPD12_1001 PF00672 HAMP domain NPD12_1001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1003 PF07670 Nucleoside recognition NPD12_1003 PF02421 Ferrous iron transport protein B NPD12_1003 PF17910 FeoB cytosolic helical domain NPD12_1003 PF07664 Ferrous iron transport protein B C terminus NPD12_1004 PF02421 Ferrous iron transport protein B NPD12_1004 PF07670 Nucleoside recognition NPD12_1004 PF17910 FeoB cytosolic helical domain NPD12_1004 PF07664 Ferrous iron transport protein B C terminus NPD12_1005 PF00300 Histidine phosphatase superfamily (branch 1) NPD12_1006 PF04294 VanW like protein NPD12_1007 PF02654 Cobalamin-5-phosphate synthase NPD12_101 PF03948 Ribosomal protein L9, C-terminal domain NPD12_101 PF01281 Ribosomal protein L9, N-terminal domain NPD12_1013 PF01242 6-pyruvoyl tetrahydropterin synthase NPD12_1014 PF00809 Pterin binding enzyme NPD12_1015 PF02734 DAK2 domain NPD12_1015 PF13684 Dihydroxyacetone kinase family NPD12_1016 PF02152 Dihydroneopterin aldolase NPD12_1016 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NPD12_1017 PF00011 Hsp20/alpha crystallin family NPD12_1018 PF01209 ubiE/COQ5 methyltransferase family NPD12_1019 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_102 PF02272 DHHA1 domain NPD12_102 PF01368 DHH family NPD12_1020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_1022 PF04542 Sigma-70 region 2 NPD12_1022 PF08281 Sigma-70, region 4 NPD12_1027 PF00005 ABC transporter NPD12_1028 PF01381 Helix-turn-helix NPD12_1031 PF08386 TAP-like protein NPD12_1031 PF00561 alpha/beta hydrolase fold NPD12_1036 PF04229 GrpB protein NPD12_1036 PF13673 Acetyltransferase (GNAT) domain NPD12_1039 PF17954 Quercetinase C-terminal cupin domain NPD12_1039 PF02678 Pirin NPD12_1040 PF01638 HxlR-like helix-turn-helix NPD12_1041 PF00881 Nitroreductase family NPD12_1043 PF00190 Cupin NPD12_1044 PF03641 Possible lysine decarboxylase NPD12_1046 PF03466 LysR substrate binding domain NPD12_1046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1047 PF00958 GMP synthase C terminal domain NPD12_1047 PF13302 Acetyltransferase (GNAT) domain NPD12_1047 PF03352 Methyladenine glycosylase NPD12_1047 PF00117 Glutamine amidotransferase class-I NPD12_1047 PF13673 Acetyltransferase (GNAT) domain NPD12_1049 PF08279 HTH domain NPD12_1049 PF13280 WYL domain NPD12_105 PF01084 Ribosomal protein S18 NPD12_1053 PF01327 Polypeptide deformylase NPD12_1054 PF00155 Aminotransferase class I and II NPD12_1054 PF00392 Bacterial regulatory proteins, gntR family NPD12_1055 PF12833 Helix-turn-helix domain NPD12_1056 PF00881 Nitroreductase family NPD12_1058 PF01638 HxlR-like helix-turn-helix NPD12_106 PF00436 Single-strand binding protein family NPD12_1060 PF00874 PRD domain NPD12_1060 PF03123 CAT RNA binding domain NPD12_1061 PF02378 Phosphotransferase system, EIIC NPD12_1061 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_1061 PF00367 phosphotransferase system, EIIB NPD12_1062 PF00232 Glycosyl hydrolase family 1 NPD12_1064 PF00953 Glycosyl transferase family 4 NPD12_1064 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NPD12_1066 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_1069 PF12833 Helix-turn-helix domain NPD12_107 PF01250 Ribosomal protein S6 NPD12_1077 PF09557 Domain of unknown function (DUF2382) NPD12_1077 PF05239 PRC-barrel domain NPD12_1078 PF04229 GrpB protein NPD12_1079 PF01476 LysM domain NPD12_1079 PF03734 L,D-transpeptidase catalytic domain NPD12_108 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_1086 PF12704 MacB-like periplasmic core domain NPD12_1086 PF02687 FtsX-like permease family NPD12_1086 PF00005 ABC transporter NPD12_1087 PF00072 Response regulator receiver domain NPD12_1087 PF00486 Transcriptional regulatory protein, C terminal NPD12_1088 PF16736 Single Cache-like NPD12_1088 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1088 PF00989 PAS fold NPD12_1089 PF01063 Amino-transferase class IV NPD12_1090 PF02632 BioY family NPD12_1093 PF13302 Acetyltransferase (GNAT) domain NPD12_1094 PF00717 Peptidase S24-like NPD12_1094 PF01726 LexA DNA binding domain NPD12_1097 PF13411 MerR HTH family regulatory protein NPD12_1097 PF07739 TipAS antibiotic-recognition domain NPD12_1098 PF07685 CobB/CobQ-like glutamine amidotransferase domain NPD12_1099 PF03186 CobD/Cbib protein NPD12_11 PF13180 PDZ domain NPD12_110 PF00924 Mechanosensitive ion channel NPD12_1100 PF00155 Aminotransferase class I and II NPD12_1101 PF01891 Cobalt uptake substrate-specific transmembrane region NPD12_1102 PF02553 Cobalt transport protein component CbiN NPD12_1105 PF03900 Porphobilinogen deaminase, C-terminal domain NPD12_1105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NPD12_1108 PF00490 Delta-aminolevulinic acid dehydratase NPD12_1109 PF07685 CobB/CobQ-like glutamine amidotransferase domain NPD12_1109 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPD12_1110 PF02570 Precorrin-8X methylmutase NPD12_1113 PF00005 ABC transporter NPD12_1115 PF00583 Acetyltransferase (GNAT) family NPD12_1117 PF12728 Helix-turn-helix domain NPD12_1117 PF02661 Fic/DOC family NPD12_1118 PF00881 Nitroreductase family NPD12_112 PF00266 Aminotransferase class-V NPD12_1121 PF01888 CbiD NPD12_1125 PF05175 Methyltransferase small domain NPD12_113 PF01594 AI-2E family transporter NPD12_1132 PF14824 Sirohaem biosynthesis protein central NPD12_1132 PF10414 Sirohaem synthase dimerisation region NPD12_1132 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1133 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1134 PF01890 Cobalamin synthesis G C-terminus NPD12_1134 PF11760 Cobalamin synthesis G N-terminal NPD12_1134 PF11761 Cobalamin biosynthesis central region NPD12_1135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1135 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPD12_1136 PF02571 Precorrin-6x reductase CbiJ/CobK NPD12_1138 PF06180 Cobalt chelatase (CbiK) NPD12_1139 PF00288 GHMP kinases N terminal domain NPD12_114 PF06866 Protein of unknown function (DUF1256) NPD12_1140 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NPD12_1140 PF12557 Cob(I)alamin adenosyltransferase N terminal NPD12_1142 PF01226 Formate/nitrite transporter NPD12_1143 PF17179 4Fe-4S dicluster domain NPD12_1144 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_1144 PF00175 Oxidoreductase NAD-binding domain NPD12_1145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPD12_1145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPD12_1145 PF13187 4Fe-4S dicluster domain NPD12_1149 PF00005 ABC transporter NPD12_1151 PF00486 Transcriptional regulatory protein, C terminal NPD12_1151 PF00072 Response regulator receiver domain NPD12_1152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1152 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1153 PF00005 ABC transporter NPD12_1154 PF01032 FecCD transport family NPD12_1155 PF01497 Periplasmic binding protein NPD12_1156 PF13419 Haloacid dehalogenase-like hydrolase NPD12_1160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1160 PF03466 LysR substrate binding domain NPD12_1164 PF02733 Dak1 domain NPD12_1165 PF00465 Iron-containing alcohol dehydrogenase NPD12_1166 PF07883 Cupin domain NPD12_1166 PF12833 Helix-turn-helix domain NPD12_1167 PF13673 Acetyltransferase (GNAT) domain NPD12_117 PF02195 ParB-like nuclease domain NPD12_117 PF17762 HTH domain found in ParB protein NPD12_1170 PF00248 Aldo/keto reductase family NPD12_1171 PF04993 TfoX N-terminal domain NPD12_1176 PF04892 VanZ like family NPD12_1177 PF00989 PAS fold NPD12_1177 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1177 PF00672 HAMP domain NPD12_1177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1178 PF00486 Transcriptional regulatory protein, C terminal NPD12_1178 PF00072 Response regulator receiver domain NPD12_1179 PF02557 D-alanyl-D-alanine carboxypeptidase NPD12_118 PF13614 AAA domain NPD12_1180 PF00962 Adenosine/AMP deaminase NPD12_1181 PF01061 ABC-2 type transporter NPD12_1182 PF01061 ABC-2 type transporter NPD12_1185 PF16124 RecQ zinc-binding NPD12_1185 PF00270 DEAD/DEAH box helicase NPD12_1185 PF00271 Helicase conserved C-terminal domain NPD12_1185 PF00570 HRDC domain NPD12_1185 PF09382 RQC domain NPD12_1186 PF02915 Rubrerythrin NPD12_1187 PF12850 Calcineurin-like phosphoesterase superfamily domain NPD12_1188 PF00486 Transcriptional regulatory protein, C terminal NPD12_1188 PF00072 Response regulator receiver domain NPD12_119 PF02195 ParB-like nuclease domain NPD12_119 PF17762 HTH domain found in ParB protein NPD12_1193 PF06480 FtsH Extracellular NPD12_1193 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_1193 PF17862 AAA+ lid domain NPD12_1193 PF01434 Peptidase family M41 NPD12_1195 PF02652 L-lactate permease NPD12_1196 PF09861 Lactate racemase N-terminal domain NPD12_1197 PF01012 Electron transfer flavoprotein domain NPD12_1198 PF01012 Electron transfer flavoprotein domain NPD12_1198 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_1199 PF02913 FAD linked oxidases, C-terminal domain NPD12_1199 PF01565 FAD binding domain NPD12_12 PF00512 His Kinase A (phospho-acceptor) domain NPD12_12 PF00989 PAS fold NPD12_12 PF16736 Single Cache-like NPD12_12 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_120 PF02527 rRNA small subunit methyltransferase G NPD12_1204 PF00155 Aminotransferase class I and II NPD12_1206 PF01047 MarR family NPD12_1207 PF06445 GyrI-like small molecule binding domain NPD12_1207 PF13411 MerR HTH family regulatory protein NPD12_1209 PF00152 tRNA synthetases class II (D, K and N) NPD12_1209 PF01336 OB-fold nucleic acid binding domain NPD12_121 PF01134 Glucose inhibited division protein A NPD12_121 PF13932 GidA associated domain NPD12_1215 PF13419 Haloacid dehalogenase-like hydrolase NPD12_1218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1218 PF03466 LysR substrate binding domain NPD12_1219 PF00583 Acetyltransferase (GNAT) family NPD12_1219 PF14268 YoaP-like NPD12_122 PF12631 MnmE helical domain NPD12_122 PF01926 50S ribosome-binding GTPase NPD12_122 PF10396 GTP-binding protein TrmE N-terminus NPD12_1221 PF04023 FeoA domain NPD12_1221 PF07664 Ferrous iron transport protein B C terminus NPD12_1221 PF07670 Nucleoside recognition NPD12_1221 PF17910 FeoB cytosolic helical domain NPD12_1221 PF02421 Ferrous iron transport protein B NPD12_1222 PF02421 Ferrous iron transport protein B NPD12_1222 PF07664 Ferrous iron transport protein B C terminus NPD12_1222 PF07670 Nucleoside recognition NPD12_1222 PF17910 FeoB cytosolic helical domain NPD12_1225 PF02557 D-alanyl-D-alanine carboxypeptidase NPD12_1227 PF00486 Transcriptional regulatory protein, C terminal NPD12_1227 PF00072 Response regulator receiver domain NPD12_1228 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1228 PF16736 Single Cache-like NPD12_1228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1228 PF00989 PAS fold NPD12_123 PF01424 R3H domain NPD12_123 PF14804 Jag N-terminus NPD12_1230 PF00067 Cytochrome P450 NPD12_1233 PF00072 Response regulator receiver domain NPD12_1233 PF00486 Transcriptional regulatory protein, C terminal NPD12_1234 PF00989 PAS fold NPD12_1234 PF18698 Histidine kinase sensor domain NPD12_1234 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1234 PF00672 HAMP domain NPD12_1234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1236 PF12833 Helix-turn-helix domain NPD12_1236 PF12852 Cupin NPD12_1237 PF01032 FecCD transport family NPD12_1238 PF01032 FecCD transport family NPD12_1239 PF00005 ABC transporter NPD12_124 PF02096 60Kd inner membrane protein NPD12_1240 PF01497 Periplasmic binding protein NPD12_1242 PF00005 ABC transporter NPD12_1242 PF00664 ABC transporter transmembrane region NPD12_1243 PF00005 ABC transporter NPD12_1243 PF00664 ABC transporter transmembrane region NPD12_1245 PF04397 LytTr DNA-binding domain NPD12_1245 PF00072 Response regulator receiver domain NPD12_125 PF01809 Putative membrane protein insertion efficiency factor NPD12_1250 PF00704 Glycosyl hydrolases family 18 NPD12_1250 PF00041 Fibronectin type III domain NPD12_1251 PF03190 Protein of unknown function, DUF255 NPD12_1252 PF06081 Aromatic acid exporter family member 1 NPD12_1252 PF11728 Putative aromatic acid exporter C-terminal domain NPD12_1258 PF12848 ABC transporter NPD12_1258 PF16326 ABC transporter C-terminal domain NPD12_1258 PF00005 ABC transporter NPD12_126 PF00825 Ribonuclease P NPD12_1262 PF01266 FAD dependent oxidoreductase NPD12_1263 PF04324 BFD-like [2Fe-2S] binding domain NPD12_1263 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1265 PF07690 Major Facilitator Superfamily NPD12_1266 PF03485 Arginyl tRNA synthetase N terminal domain NPD12_1266 PF05746 DALR anticodon binding domain NPD12_1266 PF00750 tRNA synthetases class I (R) NPD12_1268 PF00155 Aminotransferase class I and II NPD12_1269 PF03448 MgtE intracellular N domain NPD12_1269 PF01769 Divalent cation transporter NPD12_1269 PF00571 CBS domain NPD12_127 PF00468 Ribosomal protein L34 NPD12_1271 PF17910 FeoB cytosolic helical domain NPD12_1271 PF02421 Ferrous iron transport protein B NPD12_1271 PF07670 Nucleoside recognition NPD12_1271 PF07664 Ferrous iron transport protein B C terminus NPD12_1275 PF02839 Carbohydrate binding domain NPD12_1278 PF09383 NIL domain NPD12_1278 PF00005 ABC transporter NPD12_1279 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_128 PF00308 Bacterial dnaA protein NPD12_128 PF08299 Bacterial dnaA protein helix-turn-helix NPD12_128 PF11638 DnaA N-terminal domain NPD12_1280 PF03180 NLPA lipoprotein NPD12_1282 PF03180 NLPA lipoprotein NPD12_1283 PF07687 Peptidase dimerisation domain NPD12_1283 PF01546 Peptidase family M20/M25/M40 NPD12_1285 PF00392 Bacterial regulatory proteins, gntR family NPD12_1285 PF07729 FCD domain NPD12_1286 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_1286 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPD12_1288 PF00749 tRNA synthetases class I (E and Q), catalytic domain NPD12_1289 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NPD12_1289 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NPD12_129 PF02768 DNA polymerase III beta subunit, C-terminal domain NPD12_129 PF02767 DNA polymerase III beta subunit, central domain NPD12_129 PF00712 DNA polymerase III beta subunit, N-terminal domain NPD12_1290 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NPD12_1290 PF00753 Metallo-beta-lactamase superfamily NPD12_1290 PF10996 Beta-Casp domain NPD12_1292 PF01966 HD domain NPD12_1292 PF12627 Probable RNA and SrmB- binding site of polymerase A NPD12_1292 PF01743 Poly A polymerase head domain NPD12_1293 PF00171 Aldehyde dehydrogenase family NPD12_1294 PF01235 Sodium:alanine symporter family NPD12_1295 PF01235 Sodium:alanine symporter family NPD12_1296 PF01047 MarR family NPD12_1297 PF01554 MatE NPD12_13 PF00072 Response regulator receiver domain NPD12_13 PF00486 Transcriptional regulatory protein, C terminal NPD12_1300 PF13416 Bacterial extracellular solute-binding protein NPD12_1302 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1305 PF13302 Acetyltransferase (GNAT) domain NPD12_1308 PF03956 Lysine exporter LysO NPD12_1309 PF12464 Maltose acetyltransferase NPD12_1309 PF14602 Hexapeptide repeat of succinyl-transferase NPD12_131 PF02463 RecF/RecN/SMC N terminal domain NPD12_1310 PF08279 HTH domain NPD12_1310 PF03099 Biotin/lipoate A/B protein ligase family NPD12_1310 PF02237 Biotin protein ligase C terminal domain NPD12_1313 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1313 PF18698 Histidine kinase sensor domain NPD12_1313 PF00989 PAS fold NPD12_1313 PF00672 HAMP domain NPD12_1313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1317 PF00571 CBS domain NPD12_1317 PF01769 Divalent cation transporter NPD12_1317 PF03448 MgtE intracellular N domain NPD12_1318 PF00266 Aminotransferase class-V NPD12_1319 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_1319 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_1321 PF00258 Flavodoxin NPD12_1321 PF00301 Rubredoxin NPD12_1321 PF00753 Metallo-beta-lactamase superfamily NPD12_1323 PF02028 BCCT, betaine/carnitine/choline family transporter NPD12_1326 PF00857 Isochorismatase family NPD12_133 PF01751 Toprim domain NPD12_133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_133 PF00986 DNA gyrase B subunit, carboxyl terminus NPD12_133 PF00204 DNA gyrase B NPD12_1333 PF00581 Rhodanese-like domain NPD12_1335 PF01594 AI-2E family transporter NPD12_134 PF00521 DNA gyrase/topoisomerase IV, subunit A NPD12_134 PF03989 DNA gyrase C-terminal domain, beta-propeller NPD12_1342 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1346 PF02401 LytB protein NPD12_1346 PF00575 S1 RNA binding domain NPD12_1347 PF03061 Thioesterase superfamily NPD12_1350 PF02653 Branched-chain amino acid transport system / permease component NPD12_1351 PF00005 ABC transporter NPD12_1351 PF09383 NIL domain NPD12_1353 PF00155 Aminotransferase class I and II NPD12_1354 PF00892 EamA-like transporter family NPD12_1355 PF00294 pfkB family carbohydrate kinase NPD12_1356 PF04227 Indigoidine synthase A like protein NPD12_1357 PF08546 Ketopantoate reductase PanE/ApbA C terminal NPD12_1357 PF02558 Ketopantoate reductase PanE/ApbA NPD12_1358 PF04961 Formiminotransferase-cyclodeaminase NPD12_1359 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NPD12_1359 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NPD12_1364 PF02535 ZIP Zinc transporter NPD12_1365 PF02082 Transcriptional regulator NPD12_1366 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_1367 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1368 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_1369 PF00266 Aminotransferase class-V NPD12_1370 PF02540 NAD synthase NPD12_1374 PF04397 LytTr DNA-binding domain NPD12_1374 PF00072 Response regulator receiver domain NPD12_1375 PF17203 Single cache domain 3 NPD12_1375 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NPD12_1375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1375 PF00989 PAS fold NPD12_1376 PF00005 ABC transporter NPD12_1378 PF03009 Glycerophosphoryl diester phosphodiesterase family NPD12_1380 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NPD12_1380 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NPD12_1380 PF10371 Domain of unknown function NPD12_1380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPD12_1380 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NPD12_1382 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NPD12_1383 PF01593 Flavin containing amine oxidoreductase NPD12_1387 PF00480 ROK family NPD12_1388 PF00232 Glycosyl hydrolase family 1 NPD12_1389 PF01373 Glycosyl hydrolase family 14 NPD12_1389 PF00686 Starch binding domain NPD12_1390 PF01479 S4 domain NPD12_1390 PF00579 tRNA synthetases class I (W and Y) NPD12_1392 PF00005 ABC transporter NPD12_1397 PF01476 LysM domain NPD12_1397 PF00704 Glycosyl hydrolases family 18 NPD12_1398 PF00990 Diguanylate cyclase, GGDEF domain NPD12_1398 PF00563 EAL domain NPD12_1398 PF03707 Bacterial signalling protein N terminal repeat NPD12_1399 PF03315 Serine dehydratase beta chain NPD12_14 PF14572 Phosphoribosyl synthetase-associated domain NPD12_14 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NPD12_1400 PF03313 Serine dehydratase alpha chain NPD12_1405 PF00005 ABC transporter NPD12_1405 PF00664 ABC transporter transmembrane region NPD12_1405 PF03412 Peptidase C39 family NPD12_1408 PF01244 Membrane dipeptidase (Peptidase family M19) NPD12_1409 PF04893 Yip1 domain NPD12_141 PF02829 3H domain NPD12_141 PF08279 HTH domain NPD12_1410 PF12704 MacB-like periplasmic core domain NPD12_1410 PF00005 ABC transporter NPD12_1410 PF02687 FtsX-like permease family NPD12_1412 PF00005 ABC transporter NPD12_1413 PF12911 N-terminal TM domain of oligopeptide transport permease C NPD12_1413 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1414 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1418 PF05067 Manganese containing catalase NPD12_1419 PF12708 Pectate lyase superfamily protein NPD12_1419 PF09992 Phosphodiester glycosidase NPD12_142 PF04015 Domain of unknown function (DUF362) NPD12_1423 PF00692 dUTPase NPD12_1424 PF08141 Small acid-soluble spore protein H family NPD12_143 PF03699 Uncharacterised protein family (UPF0182) NPD12_1430 PF00440 Bacterial regulatory proteins, tetR family NPD12_1432 PF00005 ABC transporter NPD12_1436 PF01235 Sodium:alanine symporter family NPD12_1438 PF01381 Helix-turn-helix NPD12_1441 PF00462 Glutaredoxin NPD12_1442 PF00171 Aldehyde dehydrogenase family NPD12_1443 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1445 PF09338 Glycine/sarcosine/betaine reductase component B subunits NPD12_1446 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) NPD12_1447 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) NPD12_1448 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1449 PF00085 Thioredoxin NPD12_145 PF01266 FAD dependent oxidoreductase NPD12_1450 PF04723 Glycine reductase complex selenoprotein A NPD12_1451 PF04723 Glycine reductase complex selenoprotein A NPD12_1452 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_1453 PF02504 Fatty acid synthesis protein NPD12_1454 PF02245 Methylpurine-DNA glycosylase (MPG) NPD12_1456 PF01636 Phosphotransferase enzyme family NPD12_1457 PF00589 Phage integrase family NPD12_147 PF02403 Seryl-tRNA synthetase N-terminal domain NPD12_147 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_1477 PF03819 MazG nucleotide pyrophosphohydrolase domain NPD12_1484 PF03592 Terminase small subunit NPD12_1497 PF17481 Phage tail sheath protein beta-sandwich domain NPD12_1497 PF17482 Phage tail sheath C-terminal domain NPD12_1497 PF04984 Phage tail sheath protein subtilisin-like domain NPD12_1498 PF09393 Phage tail tube protein NPD12_15 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_15 PF00483 Nucleotidyl transferase NPD12_1506 PF04865 Baseplate J-like protein NPD12_1518 PF01636 Phosphotransferase enzyme family NPD12_1520 PF00596 Class II Aldolase and Adducin N-terminal domain NPD12_1521 PF00455 DeoR C terminal sensor domain NPD12_1521 PF08220 DeoR-like helix-turn-helix domain NPD12_1523 PF01545 Cation efflux family NPD12_1523 PF16916 Dimerisation domain of Zinc Transporter NPD12_1524 PF04239 Protein of unknown function (DUF421) NPD12_153 PF02666 Phosphatidylserine decarboxylase NPD12_1534 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_1534 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_1535 PF00941 FAD binding domain in molybdopterin dehydrogenase NPD12_1535 PF03450 CO dehydrogenase flavoprotein C-terminal domain NPD12_1536 PF01799 [2Fe-2S] binding domain NPD12_1536 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_1537 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_1538 PF01751 Toprim domain NPD12_1538 PF01131 DNA topoisomerase NPD12_1539 PF02659 Putative manganese efflux pump NPD12_1541 PF00923 Transaldolase/Fructose-6-phosphate aldolase NPD12_1542 PF00753 Metallo-beta-lactamase superfamily NPD12_1542 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NPD12_1542 PF17770 Ribonuclease J C-terminal domain NPD12_1543 PF01235 Sodium:alanine symporter family NPD12_1545 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) NPD12_155 PF00005 ABC transporter NPD12_1550 PF10997 Alternate to MurJ NPD12_1551 PF02583 Metal-sensitive transcriptional repressor NPD12_1552 PF00403 Heavy-metal-associated domain NPD12_1553 PF00403 Heavy-metal-associated domain NPD12_1555 PF00005 ABC transporter NPD12_1555 PF00664 ABC transporter transmembrane region NPD12_1558 PF00486 Transcriptional regulatory protein, C terminal NPD12_1558 PF00072 Response regulator receiver domain NPD12_1559 PF16736 Single Cache-like NPD12_1559 PF00989 PAS fold NPD12_1559 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1562 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_1578 PF01478 Type IV leader peptidase family NPD12_1578 PF06750 Bacterial Peptidase A24 N-terminal domain NPD12_1580 PF02254 TrkA-N domain NPD12_1580 PF02080 TrkA-C domain NPD12_1581 PF02386 Cation transport protein NPD12_1582 PF13361 UvrD-like helicase C-terminal domain NPD12_1582 PF00580 UvrD/REP helicase N-terminal domain NPD12_1582 PF13361 UvrD-like helicase C-terminal domain NPD12_1582 PF00580 UvrD/REP helicase N-terminal domain NPD12_1584 PF00392 Bacterial regulatory proteins, gntR family NPD12_1584 PF00155 Aminotransferase class I and II NPD12_1585 PF07486 Cell Wall Hydrolase NPD12_1586 PF02915 Rubrerythrin NPD12_1587 PF04122 Putative cell wall binding repeat 2 NPD12_1587 PF08486 Stage II sporulation protein NPD12_1588 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_1588 PF00367 phosphotransferase system, EIIB NPD12_1588 PF02378 Phosphotransferase system, EIIC NPD12_1589 PF01255 Putative undecaprenyl diphosphate synthase NPD12_159 PF02666 Phosphatidylserine decarboxylase NPD12_1592 PF03063 Prismane/CO dehydrogenase family NPD12_1594 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1594 PF18267 Rubredoxin NAD+ reductase C-terminal domain NPD12_1595 PF00072 Response regulator receiver domain NPD12_1595 PF00486 Transcriptional regulatory protein, C terminal NPD12_1596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1596 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1597 PF02687 FtsX-like permease family NPD12_1597 PF12704 MacB-like periplasmic core domain NPD12_1598 PF00005 ABC transporter NPD12_16 PF04026 SpoVG NPD12_160 PF03109 ABC1 family NPD12_1600 PF00664 ABC transporter transmembrane region NPD12_1600 PF00005 ABC transporter NPD12_1601 PF00005 ABC transporter NPD12_1601 PF00664 ABC transporter transmembrane region NPD12_1602 PF11756 Nitrous oxide-stimulated promoter NPD12_1603 PF13545 Crp-like helix-turn-helix domain NPD12_1604 PF07690 Major Facilitator Superfamily NPD12_1605 PF01497 Periplasmic binding protein NPD12_1606 PF01032 FecCD transport family NPD12_1607 PF00005 ABC transporter NPD12_1609 PF12838 4Fe-4S dicluster domain NPD12_1610 PF01380 SIS domain NPD12_1610 PF01418 Helix-turn-helix domain, rpiR family NPD12_1611 PF13580 SIS domain NPD12_1612 PF02378 Phosphotransferase system, EIIC NPD12_1612 PF00367 phosphotransferase system, EIIB NPD12_1620 PF00672 HAMP domain NPD12_1620 PF12729 Four helix bundle sensory module for signal transduction NPD12_1620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1621 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1622 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1623 PF12911 N-terminal TM domain of oligopeptide transport permease C NPD12_1623 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1624 PF00005 ABC transporter NPD12_1625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_1625 PF00005 ABC transporter NPD12_1627 PF00950 ABC 3 transport family NPD12_1628 PF00005 ABC transporter NPD12_1629 PF01297 Zinc-uptake complex component A periplasmic NPD12_163 PF13426 PAS domain NPD12_163 PF00158 Sigma-54 interaction domain NPD12_163 PF02954 Bacterial regulatory protein, Fis family NPD12_1632 PF00990 Diguanylate cyclase, GGDEF domain NPD12_1635 PF00005 ABC transporter NPD12_1636 PF01475 Ferric uptake regulator family NPD12_1637 PF02001 Protein of unknown function DUF134 NPD12_1638 PF00246 Zinc carboxypeptidase NPD12_1638 PF01476 LysM domain NPD12_1639 PF00753 Metallo-beta-lactamase superfamily NPD12_164 PF01053 Cys/Met metabolism PLP-dependent enzyme NPD12_1640 PF13520 Amino acid permease NPD12_1641 PF08000 Bacterial PH domain NPD12_1642 PF07730 Histidine kinase NPD12_1643 PF00196 Bacterial regulatory proteins, luxR family NPD12_1643 PF00072 Response regulator receiver domain NPD12_1644 PF00005 ABC transporter NPD12_165 PF14437 MafB19-like deaminase NPD12_1650 PF00313 'Cold-shock' DNA-binding domain NPD12_1651 PF07687 Peptidase dimerisation domain NPD12_1651 PF01546 Peptidase family M20/M25/M40 NPD12_1654 PF01625 Peptide methionine sulfoxide reductase NPD12_1655 PF00005 ABC transporter NPD12_1656 PF02687 FtsX-like permease family NPD12_1658 PF00072 Response regulator receiver domain NPD12_1658 PF00486 Transcriptional regulatory protein, C terminal NPD12_1659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1660 PF00005 ABC transporter NPD12_1664 PF00155 Aminotransferase class I and II NPD12_1665 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_1666 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1667 PF00005 ABC transporter NPD12_1669 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_1669 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_167 PF12169 DNA polymerase III subunits gamma and tau domain III NPD12_1670 PF00293 NUDIX domain NPD12_1672 PF00465 Iron-containing alcohol dehydrogenase NPD12_1674 PF03606 C4-dicarboxylate anaerobic carrier NPD12_1675 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NPD12_1675 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NPD12_1675 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NPD12_1676 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_1679 PF13361 UvrD-like helicase C-terminal domain NPD12_1679 PF00580 UvrD/REP helicase N-terminal domain NPD12_168 PF02575 YbaB/EbfC DNA-binding family NPD12_1681 PF02491 SHS2 domain inserted in FTSA NPD12_1682 PF07687 Peptidase dimerisation domain NPD12_1682 PF01546 Peptidase family M20/M25/M40 NPD12_1683 PF08239 Bacterial SH3 domain NPD12_1683 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_1684 PF01479 S4 domain NPD12_1684 PF00849 RNA pseudouridylate synthase NPD12_1685 PF01943 Polysaccharide biosynthesis protein NPD12_1685 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_1689 PF00465 Iron-containing alcohol dehydrogenase NPD12_169 PF13662 Toprim domain NPD12_169 PF02132 RecR protein NPD12_1690 PF13654 AAA domain NPD12_1690 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_1691 PF03413 Peptidase propeptide and YPEB domain NPD12_1691 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1691 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1691 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1693 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1693 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1693 PF03413 Peptidase propeptide and YPEB domain NPD12_1693 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1694 PF03413 Peptidase propeptide and YPEB domain NPD12_1694 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1694 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1694 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1695 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1695 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1695 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1695 PF03413 Peptidase propeptide and YPEB domain NPD12_1696 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1696 PF03413 Peptidase propeptide and YPEB domain NPD12_1696 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1696 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1697 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NPD12_1697 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NPD12_1698 PF00890 FAD binding domain NPD12_1699 PF02445 Quinolinate synthetase A protein NPD12_17 PF00156 Phosphoribosyl transferase domain NPD12_17 PF09182 Bacterial purine repressor, N-terminal NPD12_1701 PF03006 Haemolysin-III related NPD12_1702 PF01926 50S ribosome-binding GTPase NPD12_1702 PF06071 Protein of unknown function (DUF933) NPD12_1703 PF02381 MraZ protein, putative antitoxin-like NPD12_1704 PF01795 MraW methylase family NPD12_1706 PF00905 Penicillin binding protein transpeptidase domain NPD12_1706 PF03793 PASTA domain NPD12_1706 PF03717 Penicillin-binding Protein dimerisation domain NPD12_1707 PF08245 Mur ligase middle domain NPD12_1707 PF02875 Mur ligase family, glutamate ligase domain NPD12_1707 PF01225 Mur ligase family, catalytic domain NPD12_1708 PF01225 Mur ligase family, catalytic domain NPD12_1708 PF02875 Mur ligase family, glutamate ligase domain NPD12_1708 PF08245 Mur ligase middle domain NPD12_1709 PF00953 Glycosyl transferase family 4 NPD12_1709 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NPD12_1710 PF01098 Cell cycle protein NPD12_1711 PF08478 POTRA domain, FtsQ-type NPD12_1711 PF03799 Cell division protein FtsQ NPD12_1713 PF06947 Protein of unknown function (DUF1290) NPD12_1715 PF01168 Alanine racemase, N-terminal domain NPD12_1716 PF04472 Cell division protein SepF NPD12_1717 PF02325 YGGT family NPD12_1719 PF05103 DivIVA protein NPD12_172 PF17746 SfsA N-terminal OB domain NPD12_172 PF03749 Sugar fermentation stimulation protein RE domain NPD12_1720 PF01761 3-dehydroquinate synthase NPD12_1721 PF01048 Phosphorylase superfamily NPD12_1722 PF00793 DAHP synthetase I family NPD12_1722 PF01817 Chorismate mutase type II NPD12_1723 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPD12_1724 PF01258 Prokaryotic dksA/traR C4-type zinc finger NPD12_1725 PF01252 Signal peptidase (SPase) II NPD12_1726 PF00849 RNA pseudouridylate synthase NPD12_1726 PF01479 S4 domain NPD12_1727 PF00156 Phosphoribosyl transferase domain NPD12_1728 PF00860 Permease family NPD12_1729 PF03372 Endonuclease/Exonuclease/phosphatase family NPD12_173 PF09297 NADH pyrophosphatase zinc ribbon domain NPD12_173 PF00293 NUDIX domain NPD12_1730 PF02926 THUMP domain NPD12_1730 PF01170 Putative RNA methylase family UPF0020 NPD12_1733 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1734 PF00005 ABC transporter NPD12_1736 PF01734 Patatin-like phospholipase NPD12_1738 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_1739 PF03553 Na+/H+ antiporter family NPD12_1741 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPD12_1741 PF07683 Cobalamin synthesis protein cobW C-terminal domain NPD12_1743 PF02607 B12 binding domain NPD12_1743 PF02310 B12 binding domain NPD12_1744 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_1746 PF00005 ABC transporter NPD12_1746 PF09383 NIL domain NPD12_1747 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1748 PF03180 NLPA lipoprotein NPD12_1750 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NPD12_1751 PF03590 Aspartate-ammonia ligase NPD12_1752 PF01266 FAD dependent oxidoreductase NPD12_1752 PF00355 Rieske [2Fe-2S] domain NPD12_1753 PF01751 Toprim domain NPD12_1753 PF01131 DNA topoisomerase NPD12_1754 PF05190 MutS family domain IV NPD12_1754 PF05192 MutS domain III NPD12_1754 PF05188 MutS domain II NPD12_1754 PF00488 MutS domain V NPD12_1754 PF01624 MutS domain I NPD12_1755 PF00248 Aldo/keto reductase family NPD12_1756 PF04073 Aminoacyl-tRNA editing domain NPD12_1758 PF08402 TOBE domain NPD12_1758 PF00005 ABC transporter NPD12_1759 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1760 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1762 PF00056 lactate/malate dehydrogenase, NAD binding domain NPD12_1762 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NPD12_1763 PF07729 FCD domain NPD12_1763 PF00392 Bacterial regulatory proteins, gntR family NPD12_1766 PF01966 HD domain NPD12_1766 PF00072 Response regulator receiver domain NPD12_1768 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1768 PF00672 HAMP domain NPD12_1768 PF02743 Cache domain NPD12_177 PF00899 ThiF family NPD12_1771 PF01638 HxlR-like helix-turn-helix NPD12_1773 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NPD12_1773 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NPD12_1774 PF09370 Phosphoenolpyruvate hydrolase-like NPD12_1776 PF09370 Phosphoenolpyruvate hydrolase-like NPD12_1779 PF16916 Dimerisation domain of Zinc Transporter NPD12_1779 PF01545 Cation efflux family NPD12_1780 PF00854 POT family NPD12_1783 PF08668 HDOD domain NPD12_1784 PF00689 Cation transporting ATPase, C-terminus NPD12_1784 PF00690 Cation transporter/ATPase, N-terminus NPD12_1789 PF00072 Response regulator receiver domain NPD12_1789 PF00196 Bacterial regulatory proteins, luxR family NPD12_179 PF13302 Acetyltransferase (GNAT) domain NPD12_1791 PF13280 WYL domain NPD12_1791 PF08279 HTH domain NPD12_1793 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_1794 PF01242 6-pyruvoyl tetrahydropterin synthase NPD12_1795 PF04055 Radical SAM superfamily NPD12_1796 PF01227 GTP cyclohydrolase I NPD12_1797 PF06508 Queuosine biosynthesis protein QueC NPD12_1798 PF02517 CPBP intramembrane metalloprotease NPD12_1799 PF00672 HAMP domain NPD12_1799 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1799 PF02743 Cache domain NPD12_18 PF02875 Mur ligase family, glutamate ligase domain NPD12_18 PF08245 Mur ligase middle domain NPD12_18 PF01225 Mur ligase family, catalytic domain NPD12_1802 PF04198 Putative sugar-binding domain NPD12_1803 PF01791 DeoC/LacD family aldolase NPD12_1804 PF00294 pfkB family carbohydrate kinase NPD12_1805 PF13393 Histidyl-tRNA synthetase NPD12_1806 PF01634 ATP phosphoribosyltransferase NPD12_1807 PF00815 Histidinol dehydrogenase NPD12_1808 PF00475 Imidazoleglycerol-phosphate dehydratase NPD12_1809 PF00117 Glutamine amidotransferase class-I NPD12_1810 PF00977 Histidine biosynthesis protein NPD12_1811 PF00155 Aminotransferase class I and II NPD12_1812 PF00977 Histidine biosynthesis protein NPD12_1813 PF01502 Phosphoribosyl-AMP cyclohydrolase NPD12_1814 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NPD12_1815 PF04143 Sulphur transport NPD12_1817 PF04143 Sulphur transport NPD12_1818 PF03466 LysR substrate binding domain NPD12_1818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_1820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1821 PF04143 Sulphur transport NPD12_1822 PF00005 ABC transporter NPD12_1825 PF00486 Transcriptional regulatory protein, C terminal NPD12_1825 PF00072 Response regulator receiver domain NPD12_1826 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1828 PF13520 Amino acid permease NPD12_1829 PF03006 Haemolysin-III related NPD12_1832 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_1837 PF00176 SNF2 family N-terminal domain NPD12_1837 PF00271 Helicase conserved C-terminal domain NPD12_1837 PF04434 SWIM zinc finger NPD12_1840 PF12833 Helix-turn-helix domain NPD12_1840 PF01497 Periplasmic binding protein NPD12_1841 PF00005 ABC transporter NPD12_1841 PF00664 ABC transporter transmembrane region NPD12_1842 PF00005 ABC transporter NPD12_1842 PF00664 ABC transporter transmembrane region NPD12_1843 PF00356 Bacterial regulatory proteins, lacI family NPD12_1843 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NPD12_1844 PF00480 ROK family NPD12_1844 PF01325 Iron dependent repressor, N-terminal DNA binding domain NPD12_1845 PF00128 Alpha amylase, catalytic domain NPD12_1845 PF16657 Maltogenic Amylase, C-terminal domain NPD12_1846 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_1846 PF00367 phosphotransferase system, EIIB NPD12_1846 PF02378 Phosphotransferase system, EIIC NPD12_1849 PF01784 NIF3 (NGG1p interacting factor 3) NPD12_1852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1852 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1853 PF00072 Response regulator receiver domain NPD12_1853 PF00486 Transcriptional regulatory protein, C terminal NPD12_1856 PF00455 DeoR C terminal sensor domain NPD12_1856 PF08220 DeoR-like helix-turn-helix domain NPD12_1860 PF04151 Bacterial pre-peptidase C-terminal domain NPD12_1860 PF01752 Collagenase NPD12_1860 PF18496 Collagenase G catalytic helper subdomain NPD12_1860 PF08453 Peptidase family M9 N-terminal NPD12_1861 PF02219 Methylenetetrahydrofolate reductase NPD12_1863 PF02574 Homocysteine S-methyltransferase NPD12_1863 PF02965 Vitamin B12 dependent methionine synthase, activation domain NPD12_1863 PF02607 B12 binding domain NPD12_1863 PF02310 B12 binding domain NPD12_1863 PF00809 Pterin binding enzyme NPD12_1867 PF02954 Bacterial regulatory protein, Fis family NPD12_1867 PF13426 PAS domain NPD12_1867 PF00158 Sigma-54 interaction domain NPD12_1869 PF00676 Dehydrogenase E1 component NPD12_1870 PF02780 Transketolase, C-terminal domain NPD12_1870 PF02779 Transketolase, pyrimidine binding domain NPD12_1871 PF01513 ATP-NAD kinase NPD12_1872 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NPD12_1872 PF00364 Biotin-requiring enzyme NPD12_1872 PF02817 e3 binding domain NPD12_1873 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1873 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_1874 PF03099 Biotin/lipoate A/B protein ligase family NPD12_1874 PF10437 Bacterial lipoate protein ligase C-terminus NPD12_1875 PF00571 CBS domain NPD12_1875 PF00005 ABC transporter NPD12_1876 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NPD12_1877 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_1878 PF08544 GHMP kinases C terminal NPD12_1878 PF00288 GHMP kinases N terminal domain NPD12_1879 PF00696 Amino acid kinase family NPD12_1879 PF13840 ACT domain NPD12_1880 PF00742 Homoserine dehydrogenase NPD12_1880 PF01842 ACT domain NPD12_1880 PF03447 Homoserine dehydrogenase, NAD binding domain NPD12_1881 PF00158 Sigma-54 interaction domain NPD12_1881 PF13426 PAS domain NPD12_1881 PF02954 Bacterial regulatory protein, Fis family NPD12_1882 PF00465 Iron-containing alcohol dehydrogenase NPD12_1883 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_1883 PF00175 Oxidoreductase NAD-binding domain NPD12_1884 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1884 PF13247 4Fe-4S dicluster domain NPD12_1884 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_1885 PF13426 PAS domain NPD12_1885 PF00158 Sigma-54 interaction domain NPD12_1885 PF02954 Bacterial regulatory protein, Fis family NPD12_1887 PF02368 Bacterial Ig-like domain (group 2) NPD12_1896 PF00158 Sigma-54 interaction domain NPD12_1896 PF02954 Bacterial regulatory protein, Fis family NPD12_1896 PF13188 PAS domain NPD12_1899 PF01168 Alanine racemase, N-terminal domain NPD12_1899 PF00842 Alanine racemase, C-terminal domain NPD12_1900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1900 PF02743 Cache domain NPD12_1900 PF00672 HAMP domain NPD12_1901 PF00860 Permease family NPD12_1904 PF00672 HAMP domain NPD12_1904 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1904 PF02743 Cache domain NPD12_1907 PF00271 Helicase conserved C-terminal domain NPD12_1907 PF00176 SNF2 family N-terminal domain NPD12_1907 PF04434 SWIM zinc finger NPD12_1908 PF18389 TrmO C-terminal domain NPD12_1908 PF01980 tRNA-methyltransferase O NPD12_1910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1911 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1913 PF00005 ABC transporter NPD12_1913 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_1914 PF00929 Exonuclease NPD12_1914 PF04851 Type III restriction enzyme, res subunit NPD12_1914 PF13307 Helicase C-terminal domain NPD12_1915 PF06207 Protein of unknown function (DUF1002) NPD12_1917 PF00294 pfkB family carbohydrate kinase NPD12_1918 PF00854 POT family NPD12_1921 PF12671 Putative amidase domain NPD12_1923 PF00294 pfkB family carbohydrate kinase NPD12_1924 PF00188 Cysteine-rich secretory protein family NPD12_1926 PF02743 Cache domain NPD12_1926 PF00672 HAMP domain NPD12_1926 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1927 PF12848 ABC transporter NPD12_1927 PF00005 ABC transporter NPD12_1928 PF13187 4Fe-4S dicluster domain NPD12_1928 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPD12_1928 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPD12_1929 PF00072 Response regulator receiver domain NPD12_1929 PF01584 CheW-like domain NPD12_1930 PF00271 Helicase conserved C-terminal domain NPD12_1930 PF00270 DEAD/DEAH box helicase NPD12_1931 PF13509 S1 domain NPD12_1931 PF17783 CvfB-like winged helix domain NPD12_1932 PF00271 Helicase conserved C-terminal domain NPD12_1932 PF00270 DEAD/DEAH box helicase NPD12_1932 PF03880 DbpA RNA binding domain NPD12_1935 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPD12_1935 PF13457 GW (Gly-Tryp) dipeptide domain NPD12_1936 PF00210 Ferritin-like domain NPD12_1937 PF00072 Response regulator receiver domain NPD12_1940 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_1941 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_1943 PF02899 Phage integrase, N-terminal SAM-like domain NPD12_1943 PF00589 Phage integrase family NPD12_1945 PF00717 Peptidase S24-like NPD12_1945 PF01726 LexA DNA binding domain NPD12_1946 PF06838 Methionine gamma-lyase NPD12_1947 PF17209 Hfq protein NPD12_1949 PF01119 DNA mismatch repair protein, C-terminal domain NPD12_1949 PF08676 MutL C terminal dimerisation domain NPD12_1950 PF05190 MutS family domain IV NPD12_1950 PF05192 MutS domain III NPD12_1950 PF05188 MutS domain II NPD12_1950 PF01624 MutS domain I NPD12_1950 PF00488 MutS domain V NPD12_1951 PF04055 Radical SAM superfamily NPD12_1951 PF01938 TRAM domain NPD12_1951 PF00919 Uncharacterized protein family UPF0004 NPD12_1952 PF00155 Aminotransferase class I and II NPD12_1954 PF00155 Aminotransferase class I and II NPD12_1957 PF00575 S1 RNA binding domain NPD12_1957 PF02401 LytB protein NPD12_1958 PF02224 Cytidylate kinase NPD12_1961 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NPD12_1961 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NPD12_1962 PF01380 SIS domain NPD12_1962 PF01418 Helix-turn-helix domain, rpiR family NPD12_1963 PF00849 RNA pseudouridylate synthase NPD12_1963 PF01479 S4 domain NPD12_1965 PF03313 Serine dehydratase alpha chain NPD12_1968 PF00672 HAMP domain NPD12_1968 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1968 PF02743 Cache domain NPD12_1969 PF11412 Disulphide bond corrector protein DsbC NPD12_1969 PF02683 Cytochrome C biogenesis protein transmembrane region NPD12_1971 PF00795 Carbon-nitrogen hydrolase NPD12_1973 PF02254 TrkA-N domain NPD12_1973 PF02080 TrkA-C domain NPD12_1973 PF00999 Sodium/hydrogen exchanger family NPD12_1974 PF02627 Carboxymuconolactone decarboxylase family NPD12_1977 PF01906 Putative heavy-metal-binding NPD12_1983 PF00586 AIR synthase related protein, N-terminal domain NPD12_1983 PF02769 AIR synthase related protein, C-terminal domain NPD12_1984 PF01924 Hydrogenase formation hypA family NPD12_1985 PF01455 HupF/HypC family NPD12_1986 PF01300 Telomere recombination NPD12_1986 PF17788 HypF Kae1-like domain NPD12_1986 PF07503 HypF finger NPD12_1986 PF00708 Acylphosphatase NPD12_1989 PF00374 Nickel-dependent hydrogenase NPD12_1990 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NPD12_1990 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NPD12_1993 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_1993 PF02142 MGS-like domain NPD12_1993 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NPD12_1994 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NPD12_1994 PF00117 Glutamine amidotransferase class-I NPD12_1999 PF00005 ABC transporter NPD12_1999 PF12848 ABC transporter NPD12_2000 PF00037 4Fe-4S binding domain NPD12_2000 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NPD12_2000 PF02906 Iron only hydrogenase large subunit, C-terminal domain NPD12_2000 PF02256 Iron hydrogenase small subunit NPD12_2001 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2001 PF00037 4Fe-4S binding domain NPD12_2001 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NPD12_2003 PF00999 Sodium/hydrogen exchanger family NPD12_2003 PF00582 Universal stress protein family NPD12_2005 PF01594 AI-2E family transporter NPD12_2006 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_2006 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_2008 PF09579 Sporulation protein YtfJ (Spore_YtfJ) NPD12_2009 PF04079 Segregation and condensation complex subunit ScpB NPD12_2010 PF02616 Segregation and condensation protein ScpA NPD12_2012 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_2012 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_2013 PF12787 EcsC protein family NPD12_2016 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NPD12_2016 PF02885 Glycosyl transferase family, helical bundle domain NPD12_2016 PF00591 Glycosyl transferase family, a/b domain NPD12_2017 PF01048 Phosphorylase superfamily NPD12_2018 PF02899 Phage integrase, N-terminal SAM-like domain NPD12_2018 PF00589 Phage integrase family NPD12_2021 PF00293 NUDIX domain NPD12_2022 PF13520 Amino acid permease NPD12_2023 PF00877 NlpC/P60 family NPD12_2030 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_2038 PF08769 Sporulation initiation factor Spo0A C terminal NPD12_2038 PF00072 Response regulator receiver domain NPD12_2039 PF17820 PDZ domain NPD12_2039 PF05580 SpoIVB peptidase S55 NPD12_204 PF02146 Sir2 family NPD12_2040 PF04204 Homoserine O-succinyltransferase NPD12_2041 PF00742 Homoserine dehydrogenase NPD12_2041 PF03447 Homoserine dehydrogenase, NAD binding domain NPD12_2041 PF01842 ACT domain NPD12_2042 PF01053 Cys/Met metabolism PLP-dependent enzyme NPD12_2043 PF02463 RecF/RecN/SMC N terminal domain NPD12_2044 PF02863 Arginine repressor, C-terminal domain NPD12_2044 PF01316 Arginine repressor, DNA binding domain NPD12_2045 PF01513 ATP-NAD kinase NPD12_2046 PF01479 S4 domain NPD12_2046 PF01728 FtsJ-like methyltransferase NPD12_2047 PF02780 Transketolase, C-terminal domain NPD12_2047 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NPD12_2047 PF02779 Transketolase, pyrimidine binding domain NPD12_2049 PF00348 Polyprenyl synthetase NPD12_2050 PF02609 Exonuclease VII small subunit NPD12_2051 PF02601 Exonuclease VII, large subunit NPD12_2051 PF13742 OB-fold nucleic acid binding domain NPD12_2052 PF01029 NusB family NPD12_2053 PF03780 Asp23 family, cell envelope-related function NPD12_2057 PF09546 Stage III sporulation protein AE (spore_III_AE) NPD12_2058 PF06686 Stage III sporulation protein AC/AD protein family NPD12_2059 PF06686 Stage III sporulation protein AC/AD protein family NPD12_206 PF02016 LD-carboxypeptidase N-terminal domain NPD12_206 PF17676 LD-carboxypeptidase C-terminal domain NPD12_2063 PF01132 Elongation factor P (EF-P) OB domain NPD12_2063 PF09285 Elongation factor P, C-terminal NPD12_2063 PF08207 Elongation factor P (EF-P) KOW-like domain NPD12_2064 PF01220 Dehydroquinase class II NPD12_2065 PF01202 Shikimate kinase NPD12_2073 PF07963 Prokaryotic N-terminal methylation motif NPD12_2073 PF08334 Type II secretion system (T2SS), protein G NPD12_2074 PF00482 Type II secretion system (T2SS), protein F NPD12_2075 PF00437 Type II/IV secretion system protein NPD12_2077 PF01678 Diaminopimelate epimerase NPD12_2079 PF01416 tRNA pseudouridine synthase NPD12_2081 PF01230 HIT domain NPD12_2082 PF00282 Pyridoxal-dependent decarboxylase conserved domain NPD12_2084 PF05227 CHASE3 domain NPD12_2084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2084 PF00672 HAMP domain NPD12_2085 PF03415 Clostripain family NPD12_2087 PF00072 Response regulator receiver domain NPD12_2087 PF00486 Transcriptional regulatory protein, C terminal NPD12_2088 PF00672 HAMP domain NPD12_2088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2088 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2088 PF13426 PAS domain NPD12_2089 PF01625 Peptide methionine sulfoxide reductase NPD12_2091 PF18698 Histidine kinase sensor domain NPD12_2091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2091 PF00672 HAMP domain NPD12_2091 PF00989 PAS fold NPD12_2091 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2092 PF00486 Transcriptional regulatory protein, C terminal NPD12_2092 PF00072 Response regulator receiver domain NPD12_2095 PF00005 ABC transporter NPD12_2096 PF00005 ABC transporter NPD12_2096 PF00664 ABC transporter transmembrane region NPD12_2097 PF00664 ABC transporter transmembrane region NPD12_2097 PF00005 ABC transporter NPD12_2099 PF00583 Acetyltransferase (GNAT) family NPD12_2102 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 NPD12_2102 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain NPD12_2103 PF00158 Sigma-54 interaction domain NPD12_2103 PF13426 PAS domain NPD12_2103 PF02954 Bacterial regulatory protein, Fis family NPD12_2105 PF01967 MoaC family NPD12_2106 PF04055 Radical SAM superfamily NPD12_2106 PF06463 Molybdenum Cofactor Synthesis C NPD12_2107 PF12728 Helix-turn-helix domain NPD12_2107 PF12727 PBP superfamily domain NPD12_2108 PF00994 Probable molybdopterin binding domain NPD12_2108 PF03454 MoeA C-terminal region (domain IV) NPD12_2108 PF03453 MoeA N-terminal region (domain I and II) NPD12_2109 PF00994 Probable molybdopterin binding domain NPD12_211 PF01276 Orn/Lys/Arg decarboxylase, major domain NPD12_211 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NPD12_2110 PF00005 ABC transporter NPD12_2111 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2112 PF12849 PBP superfamily domain NPD12_2113 PF01554 MatE NPD12_2116 PF00005 ABC transporter NPD12_2117 PF12704 MacB-like periplasmic core domain NPD12_2117 PF02687 FtsX-like permease family NPD12_2119 PF00561 alpha/beta hydrolase fold NPD12_2119 PF08386 TAP-like protein NPD12_212 PF02223 Thymidylate kinase NPD12_2120 PF00005 ABC transporter NPD12_2120 PF00664 ABC transporter transmembrane region NPD12_2121 PF00664 ABC transporter transmembrane region NPD12_2121 PF00005 ABC transporter NPD12_2122 PF13411 MerR HTH family regulatory protein NPD12_2122 PF06445 GyrI-like small molecule binding domain NPD12_2124 PF00690 Cation transporter/ATPase, N-terminus NPD12_2124 PF00689 Cation transporting ATPase, C-terminus NPD12_213 PF06153 Cyclic-di-AMP receptor NPD12_2130 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2130 PF00672 HAMP domain NPD12_2130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2131 PF00072 Response regulator receiver domain NPD12_2131 PF00486 Transcriptional regulatory protein, C terminal NPD12_2133 PF02361 Cobalt transport protein NPD12_2134 PF00005 ABC transporter NPD12_2135 PF09819 ABC-type cobalt transport system, permease component NPD12_2136 PF01168 Alanine racemase, N-terminal domain NPD12_2137 PF03845 Spore germination protein NPD12_2138 PF03323 Bacillus/Clostridium GerA spore germination protein NPD12_2139 PF03845 Spore germination protein NPD12_2143 PF02627 Carboxymuconolactone decarboxylase family NPD12_2146 PF02080 TrkA-C domain NPD12_2146 PF03471 Transporter associated domain NPD12_2146 PF00999 Sodium/hydrogen exchanger family NPD12_2147 PF00183 Hsp90 protein NPD12_2148 PF01624 MutS domain I NPD12_2148 PF00488 MutS domain V NPD12_2148 PF05190 MutS family domain IV NPD12_2148 PF05188 MutS domain II NPD12_2148 PF05192 MutS domain III NPD12_2149 PF02378 Phosphotransferase system, EIIC NPD12_2149 PF00367 phosphotransferase system, EIIB NPD12_215 PF04468 PSP1 C-terminal conserved region NPD12_2150 PF00128 Alpha amylase, catalytic domain NPD12_2150 PF16657 Maltogenic Amylase, C-terminal domain NPD12_2151 PF07702 UTRA domain NPD12_2151 PF00392 Bacterial regulatory proteins, gntR family NPD12_2152 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_2152 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_2153 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_2153 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_2154 PF00294 pfkB family carbohydrate kinase NPD12_2155 PF01116 Fructose-bisphosphate aldolase class-II NPD12_2157 PF11208 Protein of unknown function (DUF2992) NPD12_2160 PF00465 Iron-containing alcohol dehydrogenase NPD12_2161 PF02743 Cache domain NPD12_2161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2161 PF00672 HAMP domain NPD12_2162 PF01168 Alanine racemase, N-terminal domain NPD12_2164 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPD12_2164 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPD12_2165 PF00156 Phosphoribosyl transferase domain NPD12_2167 PF00990 Diguanylate cyclase, GGDEF domain NPD12_2168 PF03313 Serine dehydratase alpha chain NPD12_217 PF12838 4Fe-4S dicluster domain NPD12_2170 PF00270 DEAD/DEAH box helicase NPD12_2170 PF00271 Helicase conserved C-terminal domain NPD12_2171 PF00188 Cysteine-rich secretory protein family NPD12_2172 PF00392 Bacterial regulatory proteins, gntR family NPD12_2172 PF00155 Aminotransferase class I and II NPD12_2173 PF00892 EamA-like transporter family NPD12_2174 PF00155 Aminotransferase class I and II NPD12_2175 PF00005 ABC transporter NPD12_2176 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2177 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_2178 PF09861 Lactate racemase N-terminal domain NPD12_2179 PF00266 Aminotransferase class-V NPD12_218 PF05175 Methyltransferase small domain NPD12_2180 PF00302 Chloramphenicol acetyltransferase NPD12_2187 PF00854 POT family NPD12_2188 PF00854 POT family NPD12_2189 PF00557 Metallopeptidase family M24 NPD12_2189 PF01321 Creatinase/Prolidase N-terminal domain NPD12_219 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_2190 PF00561 alpha/beta hydrolase fold NPD12_2191 PF00209 Sodium:neurotransmitter symporter family NPD12_2194 PF00881 Nitroreductase family NPD12_2195 PF00092 von Willebrand factor type A domain NPD12_2198 PF06100 MCRA family NPD12_22 PF13419 Haloacid dehalogenase-like hydrolase NPD12_220 PF00877 NlpC/P60 family NPD12_2202 PF12729 Four helix bundle sensory module for signal transduction NPD12_2202 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2202 PF00672 HAMP domain NPD12_2206 PF06426 Serine acetyltransferase, N-terminal NPD12_2206 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2207 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_2209 PF00483 Nucleotidyl transferase NPD12_221 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NPD12_221 PF18277 AbrB C-terminal domain NPD12_2210 PF16363 GDP-mannose 4,6 dehydratase NPD12_2216 PF07969 Amidohydrolase family NPD12_2217 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NPD12_2224 PF12161 HsdM N-terminal domain NPD12_2224 PF02384 N-6 DNA Methylase NPD12_2225 PF12008 Type I restriction and modification enzyme - subunit R C terminal NPD12_2225 PF18766 SWI2/SNF2 ATPase NPD12_2225 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NPD12_2230 PF16363 GDP-mannose 4,6 dehydratase NPD12_2231 PF00535 Glycosyl transferase family 2 NPD12_2232 PF00535 Glycosyl transferase family 2 NPD12_2236 PF14492 Elongation Factor G, domain II NPD12_2236 PF00679 Elongation factor G C-terminus NPD12_2236 PF03764 Elongation factor G, domain IV NPD12_2236 PF00009 Elongation factor Tu GTP binding domain NPD12_2238 PF00403 Heavy-metal-associated domain NPD12_2239 PF02583 Metal-sensitive transcriptional repressor NPD12_224 PF02542 YgbB family NPD12_2240 PF00936 BMC domain NPD12_2241 PF06130 Phosphate propanoyltransferase NPD12_2242 PF00171 Aldehyde dehydrogenase family NPD12_2242 PF00465 Iron-containing alcohol dehydrogenase NPD12_2243 PF00936 BMC domain NPD12_2244 PF06249 Ethanolamine utilisation protein EutQ NPD12_2249 PF10662 Ethanolamine utilisation - propanediol utilisation NPD12_225 PF01522 Polysaccharide deacetylase NPD12_2250 PF00936 BMC domain NPD12_2251 PF04055 Radical SAM superfamily NPD12_2251 PF13187 4Fe-4S dicluster domain NPD12_2252 PF02901 Pyruvate formate lyase-like NPD12_2252 PF01228 Glycine radical NPD12_2253 PF00465 Iron-containing alcohol dehydrogenase NPD12_2253 PF00171 Aldehyde dehydrogenase family NPD12_2254 PF00936 BMC domain NPD12_2255 PF00936 BMC domain NPD12_2258 PF13411 MerR HTH family regulatory protein NPD12_2258 PF07739 TipAS antibiotic-recognition domain NPD12_2259 PF00465 Iron-containing alcohol dehydrogenase NPD12_2261 PF07690 Major Facilitator Superfamily NPD12_2262 PF07729 FCD domain NPD12_2262 PF00392 Bacterial regulatory proteins, gntR family NPD12_2266 PF09234 Domain of unknown function (DUF1963) NPD12_2269 PF04203 Sortase domain NPD12_227 PF07670 Nucleoside recognition NPD12_2271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2271 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2272 PF00486 Transcriptional regulatory protein, C terminal NPD12_2272 PF00072 Response regulator receiver domain NPD12_2275 PF00005 ABC transporter NPD12_2276 PF02687 FtsX-like permease family NPD12_2277 PF01494 FAD binding domain NPD12_2278 PF13443 Cro/C1-type HTH DNA-binding domain NPD12_228 PF07670 Nucleoside recognition NPD12_2280 PF00107 Zinc-binding dehydrogenase NPD12_2280 PF08240 Alcohol dehydrogenase GroES-like domain NPD12_2282 PF01761 3-dehydroquinate synthase NPD12_2283 PF02687 FtsX-like permease family NPD12_2284 PF00005 ABC transporter NPD12_2286 PF00874 PRD domain NPD12_2286 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_2286 PF05043 Mga helix-turn-helix domain NPD12_2286 PF08279 HTH domain NPD12_2287 PF03611 PTS system sugar-specific permease component NPD12_2288 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_2289 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_229 PF01554 MatE NPD12_2290 PF00923 Transaldolase/Fructose-6-phosphate aldolase NPD12_2293 PF12464 Maltose acetyltransferase NPD12_2293 PF14602 Hexapeptide repeat of succinyl-transferase NPD12_2295 PF00854 POT family NPD12_2296 PF13649 Methyltransferase domain NPD12_2297 PF12833 Helix-turn-helix domain NPD12_2297 PF06445 GyrI-like small molecule binding domain NPD12_2299 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NPD12_2299 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_230 PF03167 Uracil DNA glycosylase superfamily NPD12_2301 PF02567 Phenazine biosynthesis-like protein NPD12_2302 PF00155 Aminotransferase class I and II NPD12_2302 PF00392 Bacterial regulatory proteins, gntR family NPD12_2304 PF13411 MerR HTH family regulatory protein NPD12_2306 PF01381 Helix-turn-helix NPD12_2307 PF07859 alpha/beta hydrolase fold NPD12_2309 PF13520 Amino acid permease NPD12_2312 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_2314 PF13237 4Fe-4S dicluster domain NPD12_2314 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_2314 PF01012 Electron transfer flavoprotein domain NPD12_2315 PF01012 Electron transfer flavoprotein domain NPD12_2316 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_2316 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_2316 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_2317 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_2318 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_2319 PF02515 CoA-transferase family III NPD12_232 PF01588 Putative tRNA binding domain NPD12_232 PF09334 tRNA synthetases class I (M) NPD12_2322 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_2323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2326 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family NPD12_2328 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_2329 PF02447 GntP family permease NPD12_233 PF04286 Protein of unknown function (DUF445) NPD12_2330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NPD12_2331 PF17042 Nucleotide-binding C-terminal domain NPD12_2331 PF07005 Sugar-binding N-terminal domain NPD12_2332 PF00455 DeoR C terminal sensor domain NPD12_2332 PF08220 DeoR-like helix-turn-helix domain NPD12_2336 PF08361 MAATS-type transcriptional repressor, C-terminal region NPD12_2336 PF00440 Bacterial regulatory proteins, tetR family NPD12_234 PF01026 TatD related DNase NPD12_2340 PF08240 Alcohol dehydrogenase GroES-like domain NPD12_2340 PF00107 Zinc-binding dehydrogenase NPD12_2341 PF03063 Prismane/CO dehydrogenase family NPD12_2342 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NPD12_2343 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPD12_2346 PF10609 NUBPL iron-transfer P-loop NTPase NPD12_2349 PF13677 Membrane MotB of proton-channel complex MotA/MotB NPD12_2349 PF00691 OmpA family NPD12_235 PF06725 3D domain NPD12_235 PF07501 G5 domain NPD12_235 PF03990 G5-linked-Ubiquitin-like domain NPD12_2350 PF01618 MotA/TolQ/ExbB proton channel family NPD12_2351 PF04122 Putative cell wall binding repeat 2 NPD12_2351 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_2354 PF03169 OPT oligopeptide transporter protein NPD12_2355 PF01546 Peptidase family M20/M25/M40 NPD12_2355 PF07687 Peptidase dimerisation domain NPD12_2356 PF01212 Beta-eliminating lyase NPD12_2357 PF02595 Glycerate kinase family NPD12_2359 PF00106 short chain dehydrogenase NPD12_236 PF13331 Domain of unknown function (DUF4093) NPD12_236 PF13662 Toprim domain NPD12_2360 PF12679 ABC-2 family transporter protein NPD12_2361 PF00005 ABC transporter NPD12_2362 PF13673 Acetyltransferase (GNAT) domain NPD12_2363 PF01047 MarR family NPD12_2365 PF10990 Protein of unknown function (DUF2809) NPD12_2368 PF04324 BFD-like [2Fe-2S] binding domain NPD12_2368 PF01266 FAD dependent oxidoreductase NPD12_2369 PF00376 MerR family regulatory protein NPD12_2369 PF09278 MerR, DNA binding NPD12_237 PF00398 Ribosomal RNA adenine dimethylase NPD12_2370 PF13520 Amino acid permease NPD12_2371 PF01661 Macro domain NPD12_2373 PF01047 MarR family NPD12_2375 PF02110 Hydroxyethylthiazole kinase family NPD12_2378 PF00753 Metallo-beta-lactamase superfamily NPD12_2381 PF06968 Biotin and Thiamin Synthesis associated domain NPD12_2381 PF04055 Radical SAM superfamily NPD12_2382 PF02632 BioY family NPD12_2384 PF00557 Metallopeptidase family M24 NPD12_2384 PF01321 Creatinase/Prolidase N-terminal domain NPD12_2385 PF00854 POT family NPD12_2399 PF01641 SelR domain NPD12_24 PF04029 2-phosphosulpholactate phosphatase NPD12_2400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NPD12_2400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NPD12_2401 PF00664 ABC transporter transmembrane region NPD12_2401 PF00005 ABC transporter NPD12_2402 PF00664 ABC transporter transmembrane region NPD12_2402 PF00005 ABC transporter NPD12_2406 PF00005 ABC transporter NPD12_2407 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2408 PF00072 Response regulator receiver domain NPD12_2408 PF00486 Transcriptional regulatory protein, C terminal NPD12_2412 PF01327 Polypeptide deformylase NPD12_2416 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_2417 PF04072 Leucine carboxyl methyltransferase NPD12_242 PF00005 ABC transporter NPD12_2429 PF01348 Type II intron maturase NPD12_2429 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_243 PF12704 MacB-like periplasmic core domain NPD12_243 PF02687 FtsX-like permease family NPD12_2430 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_2431 PF12627 Probable RNA and SrmB- binding site of polymerase A NPD12_2431 PF01743 Poly A polymerase head domain NPD12_2431 PF13735 tRNA nucleotidyltransferase domain 2 putative NPD12_2437 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2437 PF00672 HAMP domain NPD12_2438 PF00072 Response regulator receiver domain NPD12_2438 PF00486 Transcriptional regulatory protein, C terminal NPD12_244 PF10609 NUBPL iron-transfer P-loop NTPase NPD12_2441 PF01695 IstB-like ATP binding protein NPD12_2442 PF13932 GidA associated domain NPD12_2442 PF01134 Glucose inhibited division protein A NPD12_2444 PF04070 Domain of unknown function (DUF378) NPD12_2445 PF00381 PTS HPr component phosphorylation site NPD12_2446 PF00155 Aminotransferase class I and II NPD12_2447 PF00892 EamA-like transporter family NPD12_2449 PF01040 UbiA prenyltransferase family NPD12_2450 PF04232 Stage V sporulation protein S (SpoVS) NPD12_2451 PF00013 KH domain NPD12_2451 PF12072 Domain of unknown function (DUF3552) NPD12_2451 PF01966 HD domain NPD12_2452 PF00154 recA bacterial DNA recombination protein NPD12_2453 PF01066 CDP-alcohol phosphatidyltransferase NPD12_2454 PF18693 TRAM domain NPD12_2454 PF04055 Radical SAM superfamily NPD12_2454 PF00919 Uncharacterized protein family UPF0004 NPD12_2455 PF09397 Ftsk gamma domain NPD12_2455 PF17854 FtsK alpha domain NPD12_2455 PF01580 FtsK/SpoIIIE family NPD12_2456 PF00574 Clp protease NPD12_2457 PF00696 Amino acid kinase family NPD12_2457 PF13840 ACT domain NPD12_2459 PF00675 Insulinase (Peptidase family M16) NPD12_2459 PF05193 Peptidase M16 inactive domain NPD12_2460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NPD12_2460 PF00575 S1 RNA binding domain NPD12_2460 PF01138 3' exoribonuclease family, domain 1 NPD12_2460 PF03725 3' exoribonuclease family, domain 2 NPD12_2460 PF00013 KH domain NPD12_2461 PF00312 Ribosomal protein S15 NPD12_2462 PF06574 FAD synthetase NPD12_2462 PF01687 Riboflavin kinase NPD12_2463 PF01509 TruB family pseudouridylate synthase (N terminal domain) NPD12_2463 PF16198 tRNA pseudouridylate synthase B C-terminal domain NPD12_2464 PF01368 DHH family NPD12_2464 PF02272 DHHA1 domain NPD12_2465 PF02033 Ribosome-binding factor A NPD12_2466 PF11987 Translation-initiation factor 2 NPD12_2466 PF00009 Elongation factor Tu GTP binding domain NPD12_2466 PF04760 Translation initiation factor IF-2, N-terminal region NPD12_2467 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NPD12_2468 PF04296 Protein of unknown function (DUF448) NPD12_2469 PF13184 NusA-like KH domain NPD12_2469 PF08529 NusA N-terminal domain NPD12_2469 PF00575 S1 RNA binding domain NPD12_247 PF00990 Diguanylate cyclase, GGDEF domain NPD12_2470 PF17384 RimP C-terminal SH3 domain NPD12_2470 PF02576 RimP N-terminal domain NPD12_2471 PF14579 Helix-hairpin-helix motif NPD12_2471 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NPD12_2471 PF00929 Exonuclease NPD12_2471 PF01336 OB-fold nucleic acid binding domain NPD12_2471 PF02811 PHP domain NPD12_2471 PF11490 DNA polymerase III polC-type N-terminus II NPD12_2471 PF07733 Bacterial DNA polymerase III alpha NTPase domain NPD12_2472 PF04551 GcpE protein NPD12_2473 PF17820 PDZ domain NPD12_2473 PF02163 Peptidase family M50 NPD12_2474 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NPD12_2474 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NPD12_2474 PF13288 DXP reductoisomerase C-terminal domain NPD12_2479 PF01255 Putative undecaprenyl diphosphate synthase NPD12_248 PF02308 MgtC family NPD12_2480 PF01765 Ribosome recycling factor NPD12_2481 PF00696 Amino acid kinase family NPD12_2482 PF00889 Elongation factor TS NPD12_2483 PF00318 Ribosomal protein S2 NPD12_2484 PF08222 CodY helix-turn-helix domain NPD12_2484 PF06018 CodY GAF-like domain NPD12_2485 PF01131 DNA topoisomerase NPD12_2485 PF01751 Toprim domain NPD12_2485 PF01396 Topoisomerase DNA binding C4 zinc finger NPD12_2486 PF02481 DNA recombination-mediator protein A NPD12_2486 PF18255 DNA processing protein A sterile alpha motif domain NPD12_2487 PF13335 Magnesium chelatase, subunit ChlI C-terminal NPD12_2487 PF01078 Magnesium chelatase, subunit ChlI NPD12_2488 PF02021 Uncharacterised protein family UPF0102 NPD12_2489 PF01351 Ribonuclease HII NPD12_249 PF13597 Anaerobic ribonucleoside-triphosphate reductase NPD12_249 PF03477 ATP cone domain NPD12_2490 PF01926 50S ribosome-binding GTPase NPD12_2491 PF10502 Signal peptidase, peptidase S26 NPD12_2492 PF01245 Ribosomal protein L19 NPD12_2493 PF01746 tRNA (Guanine-1)-methyltransferase NPD12_2494 PF01782 RimM N-terminal domain NPD12_2494 PF05239 PRC-barrel domain NPD12_2496 PF00886 Ribosomal protein S16 NPD12_2497 PF02881 SRP54-type protein, helical bundle domain NPD12_2497 PF02978 Signal peptide binding domain NPD12_2497 PF00448 SRP54-type protein, GTPase domain NPD12_2498 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NPD12_2499 PF02881 SRP54-type protein, helical bundle domain NPD12_2499 PF00448 SRP54-type protein, GTPase domain NPD12_25 PF16199 Radical_SAM C-terminal domain NPD12_25 PF04055 Radical SAM superfamily NPD12_250 PF04055 Radical SAM superfamily NPD12_2500 PF02463 RecF/RecN/SMC N terminal domain NPD12_2500 PF06470 SMC proteins Flexible Hinge Domain NPD12_2503 PF00035 Double-stranded RNA binding motif NPD12_2503 PF14622 Ribonuclease-III-like NPD12_2504 PF00550 Phosphopantetheine attachment site NPD12_2505 PF02504 Fatty acid synthesis protein NPD12_2506 PF01783 Ribosomal L32p protein family NPD12_2507 PF02620 Large ribosomal RNA subunit accumulation protein YceD NPD12_2508 PF00871 Acetokinase family NPD12_2509 PF01515 Phosphate acetyl/butaryl transferase NPD12_2511 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) NPD12_2512 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) NPD12_2514 PF09338 Glycine/sarcosine/betaine reductase component B subunits NPD12_2515 PF13237 4Fe-4S dicluster domain NPD12_2515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2515 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2515 PF10531 SLBB domain NPD12_2517 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2517 PF00672 HAMP domain NPD12_2517 PF02743 Cache domain NPD12_252 PF03551 Transcriptional regulator PadR-like family NPD12_2520 PF13520 Amino acid permease NPD12_2522 PF05544 Proline racemase NPD12_2524 PF09338 Glycine/sarcosine/betaine reductase component B subunits NPD12_2526 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) NPD12_2527 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) NPD12_2529 PF09338 Glycine/sarcosine/betaine reductase component B subunits NPD12_2530 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2530 PF12838 4Fe-4S dicluster domain NPD12_2530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2531 PF09338 Glycine/sarcosine/betaine reductase component B subunits NPD12_2532 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2532 PF10531 SLBB domain NPD12_2532 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2532 PF13237 4Fe-4S dicluster domain NPD12_2535 PF09338 Glycine/sarcosine/betaine reductase component B subunits NPD12_2536 PF10531 SLBB domain NPD12_2536 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2536 PF13237 4Fe-4S dicluster domain NPD12_2536 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2537 PF00158 Sigma-54 interaction domain NPD12_2537 PF00989 PAS fold NPD12_2537 PF02954 Bacterial regulatory protein, Fis family NPD12_2538 PF05636 HIGH Nucleotidyl Transferase NPD12_254 PF08264 Anticodon-binding domain of tRNA NPD12_254 PF00133 tRNA synthetases class I (I, L, M and V) NPD12_2541 PF01467 Cytidylyltransferase-like NPD12_2543 PF17191 RecG wedge domain NPD12_2543 PF00270 DEAD/DEAH box helicase NPD12_2543 PF00271 Helicase conserved C-terminal domain NPD12_2544 PF02734 DAK2 domain NPD12_2544 PF13684 Dihydroxyacetone kinase family NPD12_2545 PF03780 Asp23 family, cell envelope-related function NPD12_2546 PF00830 Ribosomal L28 family NPD12_2549 PF00834 Ribulose-phosphate 3 epimerase family NPD12_255 PF00356 Bacterial regulatory proteins, lacI family NPD12_2550 PF16745 RsgA N-terminal domain NPD12_2550 PF03193 RsgA GTPase NPD12_2551 PF00069 Protein kinase domain NPD12_2551 PF03793 PASTA domain NPD12_2553 PF04055 Radical SAM superfamily NPD12_2554 PF01189 16S rRNA methyltransferase RsmB/F NPD12_2554 PF01029 NusB family NPD12_2555 PF04298 Putative neutral zinc metallopeptidase NPD12_2556 PF00551 Formyl transferase NPD12_2556 PF02911 Formyl transferase, C-terminal domain NPD12_2557 PF01327 Polypeptide deformylase NPD12_2558 PF18074 Primosomal protein N C-terminal domain NPD12_2558 PF04851 Type III restriction enzyme, res subunit NPD12_2558 PF00271 Helicase conserved C-terminal domain NPD12_2558 PF17764 3′ DNA-binding domain (3′BD) NPD12_2558 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NPD12_2559 PF02441 Flavoprotein NPD12_2559 PF04127 DNA / pantothenate metabolism flavoprotein NPD12_256 PF13086 AAA domain NPD12_256 PF13195 Protein of unknown function (DUF4011) NPD12_256 PF13087 AAA domain NPD12_2560 PF01192 RNA polymerase Rpb6 NPD12_2561 PF00625 Guanylate kinase NPD12_2562 PF04025 Domain of unknown function (DUF370) NPD12_2563 PF08340 Domain of unknown function (DUF1732) NPD12_2563 PF03755 YicC-like family, N-terminal region NPD12_2564 PF00710 Asparaginase, N-terminal NPD12_2564 PF17763 Glutaminase/Asparaginase C-terminal domain NPD12_2566 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NPD12_2566 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NPD12_2567 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NPD12_2567 PF01926 50S ribosome-binding GTPase NPD12_2569 PF01895 PhoU domain NPD12_257 PF00483 Nucleotidyl transferase NPD12_257 PF01050 Mannose-6-phosphate isomerase NPD12_2570 PF00005 ABC transporter NPD12_2571 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2572 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2573 PF12849 PBP superfamily domain NPD12_2574 PF00989 PAS fold NPD12_2574 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2574 PF00672 HAMP domain NPD12_2575 PF00072 Response regulator receiver domain NPD12_2575 PF00486 Transcriptional regulatory protein, C terminal NPD12_2577 PF03477 ATP cone domain NPD12_2578 PF05239 PRC-barrel domain NPD12_2579 PF04545 Sigma-70, region 4 NPD12_2579 PF04539 Sigma-70 region 3 NPD12_2579 PF04542 Sigma-70 region 2 NPD12_258 PF01969 Protein of unknown function DUF111 NPD12_2580 PF04542 Sigma-70 region 2 NPD12_2580 PF04545 Sigma-70, region 4 NPD12_2581 PF03419 Sporulation factor SpoIIGA NPD12_2582 PF12327 FtsZ family, C-terminal domain NPD12_2582 PF00091 Tubulin/FtsZ family, GTPase domain NPD12_2583 PF02491 SHS2 domain inserted in FTSA NPD12_2586 PF00437 Type II/IV secretion system protein NPD12_2587 PF01488 Shikimate / quinate 5-dehydrogenase NPD12_2587 PF08501 Shikimate dehydrogenase substrate binding domain NPD12_2588 PF04545 Sigma-70, region 4 NPD12_2588 PF04542 Sigma-70 region 2 NPD12_259 PF02540 NAD synthase NPD12_2593 PF09557 Domain of unknown function (DUF2382) NPD12_2593 PF05239 PRC-barrel domain NPD12_2599 PF00905 Penicillin binding protein transpeptidase domain NPD12_260 PF00731 AIR carboxylase NPD12_2600 PF00485 Phosphoribulokinase / Uridine kinase family NPD12_2603 PF02618 YceG-like family NPD12_2605 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NPD12_2605 PF17770 Ribonuclease J C-terminal domain NPD12_2605 PF00753 Metallo-beta-lactamase superfamily NPD12_2606 PF01475 Ferric uptake regulator family NPD12_2607 PF06949 Protein of unknown function (DUF1292) NPD12_2608 PF03652 Holliday junction resolvase NPD12_2609 PF06135 IreB regulatory phosphoprotein NPD12_2610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPD12_2610 PF02272 DHHA1 domain NPD12_2610 PF01411 tRNA synthetases class II (A) NPD12_2611 PF01594 AI-2E family transporter NPD12_2613 PF01592 NifU-like N terminal domain NPD12_2614 PF00266 Aminotransferase class-V NPD12_2615 PF02082 Transcriptional regulator NPD12_2616 PF12002 MgsA AAA+ ATPase C terminal NPD12_2616 PF05496 Holliday junction DNA helicase RuvB P-loop domain NPD12_2616 PF16193 AAA C-terminal domain NPD12_2619 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_262 PF01547 Bacterial extracellular solute-binding protein NPD12_2621 PF02423 Ornithine cyclodeaminase/mu-crystallin family NPD12_2622 PF01235 Sodium:alanine symporter family NPD12_2623 PF01235 Sodium:alanine symporter family NPD12_2626 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NPD12_2626 PF02769 AIR synthase related protein, C-terminal domain NPD12_2626 PF00586 AIR synthase related protein, N-terminal domain NPD12_2628 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NPD12_2628 PF00391 PEP-utilising enzyme, mobile domain NPD12_263 PF00534 Glycosyl transferases group 1 NPD12_263 PF13439 Glycosyltransferase Family 4 NPD12_2631 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPD12_2631 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_2633 PF00501 AMP-binding enzyme NPD12_2633 PF00550 Phosphopantetheine attachment site NPD12_2633 PF00668 Condensation domain NPD12_2633 PF13193 AMP-binding enzyme C-terminal domain NPD12_2639 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPD12_2639 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPD12_2640 PF00696 Amino acid kinase family NPD12_2641 PF00464 Serine hydroxymethyltransferase NPD12_2642 PF06738 Putative threonine/serine exporter NPD12_2644 PF02583 Metal-sensitive transcriptional repressor NPD12_2647 PF01467 Cytidylyltransferase-like NPD12_2648 PF00056 lactate/malate dehydrogenase, NAD binding domain NPD12_2648 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NPD12_2650 PF02811 PHP domain NPD12_2651 PF02127 Aminopeptidase I zinc metalloprotease (M18) NPD12_2652 PF01544 CorA-like Mg2+ transporter protein NPD12_2653 PF01812 5-formyltetrahydrofolate cyclo-ligase family NPD12_2654 PF07475 HPr Serine kinase C-terminal domain NPD12_2654 PF02603 HPr Serine kinase N terminus NPD12_2655 PF05979 Bacterial protein of unknown function (DUF896) NPD12_2656 PF09335 SNARE associated Golgi protein NPD12_2657 PF09335 SNARE associated Golgi protein NPD12_2661 PF00535 Glycosyl transferase family 2 NPD12_2662 PF00581 Rhodanese-like domain NPD12_2663 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NPD12_2665 PF00258 Flavodoxin NPD12_2665 PF00753 Metallo-beta-lactamase superfamily NPD12_2669 PF01156 Inosine-uridine preferring nucleoside hydrolase NPD12_2670 PF01327 Polypeptide deformylase NPD12_2671 PF01813 ATP synthase subunit D NPD12_2672 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_2672 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_2673 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_2673 PF16886 ATPsynthase alpha/beta subunit N-term extension NPD12_2673 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_2674 PF01990 ATP synthase (F/14-kDa) subunit NPD12_2676 PF01991 ATP synthase (E/31 kDa) subunit NPD12_2677 PF00137 ATP synthase subunit C NPD12_2678 PF01496 V-type ATPase 116kDa subunit family NPD12_268 PF13439 Glycosyltransferase Family 4 NPD12_268 PF00534 Glycosyl transferases group 1 NPD12_2684 PF00689 Cation transporting ATPase, C-terminus NPD12_2684 PF00690 Cation transporter/ATPase, N-terminus NPD12_2685 PF02833 DHHA2 domain NPD12_2685 PF07085 DRTGG domain NPD12_2685 PF01368 DHH family NPD12_2685 PF00571 CBS domain NPD12_2687 PF00460 Flagella basal body rod protein NPD12_2687 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2688 PF00460 Flagella basal body rod protein NPD12_2688 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2691 PF04539 Sigma-70 region 3 NPD12_2691 PF04545 Sigma-70, region 4 NPD12_2691 PF04542 Sigma-70 region 2 NPD12_2693 PF10609 NUBPL iron-transfer P-loop NTPase NPD12_2694 PF00448 SRP54-type protein, GTPase domain NPD12_2695 PF00771 FHIPEP family NPD12_2696 PF01312 FlhB HrpN YscU SpaS Family NPD12_2697 PF01313 Bacterial export proteins, family 3 NPD12_2698 PF00813 FliP family NPD12_270 PF05582 YabG peptidase U57 NPD12_2701 PF13677 Membrane MotB of proton-channel complex MotA/MotB NPD12_2701 PF00691 OmpA family NPD12_2702 PF01618 MotA/TolQ/ExbB proton channel family NPD12_2703 PF06289 Flagellar and Swarming motility proteins NPD12_2704 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2704 PF00460 Flagella basal body rod protein NPD12_2706 PF03963 Flagellar hook capping protein - N-terminal region NPD12_2709 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_2709 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_2709 PF18269 T3SS EscN ATPase C-terminal domain NPD12_271 PF06257 Biofilm formation stimulator VEG NPD12_2711 PF01706 FliG C-terminal domain NPD12_2711 PF14841 FliG middle domain NPD12_2711 PF14842 FliG N-terminal domain NPD12_2712 PF01514 Secretory protein of YscJ/FliF family NPD12_2712 PF08345 Flagellar M-ring protein C-terminal NPD12_2713 PF02049 Flagellar hook-basal body complex protein FliE NPD12_2714 PF00460 Flagella basal body rod protein NPD12_2714 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2715 PF00460 Flagella basal body rod protein NPD12_2716 PF00669 Bacterial flagellin N-terminal helical region NPD12_2716 PF00700 Bacterial flagellin C-terminal helical region NPD12_2718 PF14698 Argininosuccinate lyase C-terminal NPD12_2718 PF00206 Lyase NPD12_2719 PF00764 Arginosuccinate synthase NPD12_272 PF01476 LysM domain NPD12_2722 PF13396 Phospholipase_D-nuclease N-terminal NPD12_2722 PF13091 PLD-like domain NPD12_2723 PF06081 Aromatic acid exporter family member 1 NPD12_2727 PF16363 GDP-mannose 4,6 dehydratase NPD12_2728 PF08666 SAF domain NPD12_2728 PF03102 NeuB family NPD12_2729 PF02348 Cytidylyltransferase NPD12_273 PF03575 Peptidase family S51 NPD12_2731 PF07922 Glycosyltransferase family 52 NPD12_2733 PF03275 UDP-galactopyranose mutase NPD12_2734 PF02397 Bacterial sugar transferase NPD12_2735 PF13614 AAA domain NPD12_2737 PF13807 G-rich domain on putative tyrosine kinase NPD12_2737 PF02706 Chain length determinant protein NPD12_274 PF02875 Mur ligase family, glutamate ligase domain NPD12_274 PF08443 RimK-like ATP-grasp domain NPD12_274 PF08245 Mur ligase middle domain NPD12_2742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2743 PF00669 Bacterial flagellin N-terminal helical region NPD12_2743 PF00700 Bacterial flagellin C-terminal helical region NPD12_275 PF00288 GHMP kinases N terminal domain NPD12_275 PF08544 GHMP kinases C terminal NPD12_2752 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_2753 PF01370 NAD dependent epimerase/dehydratase family NPD12_2754 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2754 PF17836 PglD N-terminal domain NPD12_2756 PF13472 GDSL-like Lipase/Acylhydrolase family NPD12_2756 PF02348 Cytidylyltransferase NPD12_2757 PF02142 MGS-like domain NPD12_2757 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_2757 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NPD12_2758 PF08666 SAF domain NPD12_2758 PF03102 NeuB family NPD12_2759 PF13649 Methyltransferase domain NPD12_2760 PF02350 UDP-N-acetylglucosamine 2-epimerase NPD12_2761 PF00483 Nucleotidyl transferase NPD12_2763 PF01973 Protein of unknown function DUF115 NPD12_2764 PF00700 Bacterial flagellin C-terminal helical region NPD12_2764 PF00669 Bacterial flagellin N-terminal helical region NPD12_2766 PF02465 Flagellar hook-associated protein 2 N-terminus NPD12_2766 PF07196 Flagellin hook IN motif NPD12_2766 PF07195 Flagellar hook-associated protein 2 C-terminus NPD12_2767 PF02561 Flagellar protein FliS NPD12_277 PF03323 Bacillus/Clostridium GerA spore germination protein NPD12_2770 PF02599 Global regulator protein family NPD12_2771 PF02623 FliW protein NPD12_2773 PF00460 Flagella basal body rod protein NPD12_2773 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2776 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NPD12_2776 PF04509 CheC-like family NPD12_2777 PF02154 Flagellar motor switch protein FliM NPD12_2777 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NPD12_2778 PF01584 CheW-like domain NPD12_2779 PF00072 Response regulator receiver domain NPD12_278 PF03845 Spore germination protein NPD12_2780 PF04509 CheC-like family NPD12_2781 PF01584 CheW-like domain NPD12_2781 PF07194 P2 response regulator binding domain NPD12_2781 PF02895 Signal transducing histidine kinase, homodimeric domain NPD12_2781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2781 PF01627 Hpt domain NPD12_2782 PF01739 CheR methyltransferase, SAM binding domain NPD12_2782 PF03705 CheR methyltransferase, all-alpha domain NPD12_2783 PF00072 Response regulator receiver domain NPD12_2783 PF01339 CheB methylesterase NPD12_2784 PF03975 CheD chemotactic sensory transduction NPD12_2785 PF01584 CheW-like domain NPD12_2787 PF02378 Phosphotransferase system, EIIC NPD12_2787 PF00367 phosphotransferase system, EIIB NPD12_2787 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_2788 PF00874 PRD domain NPD12_2788 PF03123 CAT RNA binding domain NPD12_2789 PF01063 Amino-transferase class IV NPD12_2793 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NPD12_2793 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NPD12_2793 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPD12_2793 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NPD12_2793 PF10371 Domain of unknown function NPD12_2794 PF03033 Glycosyltransferase family 28 N-terminal domain NPD12_2794 PF04101 Glycosyltransferase family 28 C-terminal domain NPD12_2796 PF18698 Histidine kinase sensor domain NPD12_2796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2796 PF00989 PAS fold NPD12_2796 PF00672 HAMP domain NPD12_2796 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2797 PF01368 DHH family NPD12_2797 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NPD12_2797 PF02272 DHHA1 domain NPD12_2797 PF17768 RecJ OB domain NPD12_280 PF09551 Stage II sporulation protein R (spore_II_R) NPD12_2803 PF04309 Glycerol-3-phosphate responsive antiterminator NPD12_2804 PF00521 DNA gyrase/topoisomerase IV, subunit A NPD12_2804 PF03989 DNA gyrase C-terminal domain, beta-propeller NPD12_2805 PF01751 Toprim domain NPD12_2805 PF00986 DNA gyrase B subunit, carboxyl terminus NPD12_2805 PF00204 DNA gyrase B NPD12_2805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2807 PF00999 Sodium/hydrogen exchanger family NPD12_281 PF04101 Glycosyltransferase family 28 C-terminal domain NPD12_281 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase NPD12_2810 PF01522 Polysaccharide deacetylase NPD12_2810 PF00457 Glycosyl hydrolases family 11 NPD12_2810 PF03422 Carbohydrate binding module (family 6) NPD12_2812 PF16363 GDP-mannose 4,6 dehydratase NPD12_2813 PF00258 Flavodoxin NPD12_2815 PF12833 Helix-turn-helix domain NPD12_2816 PF02016 LD-carboxypeptidase N-terminal domain NPD12_2816 PF17676 LD-carboxypeptidase C-terminal domain NPD12_2817 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPD12_2817 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPD12_2818 PF00230 Major intrinsic protein NPD12_282 PF03413 Peptidase propeptide and YPEB domain NPD12_282 PF14620 YpeB sporulation NPD12_2822 PF00005 ABC transporter NPD12_2823 PF00392 Bacterial regulatory proteins, gntR family NPD12_2824 PF04892 VanZ like family NPD12_2825 PF03063 Prismane/CO dehydrogenase family NPD12_2827 PF02073 Thermophilic metalloprotease (M29) NPD12_2829 PF03845 Spore germination protein NPD12_2830 PF03323 Bacillus/Clostridium GerA spore germination protein NPD12_2832 PF01522 Polysaccharide deacetylase NPD12_2833 PF00271 Helicase conserved C-terminal domain NPD12_2833 PF00270 DEAD/DEAH box helicase NPD12_2836 PF00672 HAMP domain NPD12_2836 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2836 PF17202 Single cache domain 3 NPD12_2839 PF04960 Glutaminase NPD12_2840 PF01476 LysM domain NPD12_2840 PF06725 3D domain NPD12_2841 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2841 PF00672 HAMP domain NPD12_2841 PF02743 Cache domain NPD12_2843 PF00268 Ribonucleotide reductase, small chain NPD12_2844 PF00317 Ribonucleotide reductase, all-alpha domain NPD12_2844 PF03477 ATP cone domain NPD12_2844 PF02867 Ribonucleotide reductase, barrel domain NPD12_2847 PF00817 impB/mucB/samB family NPD12_2847 PF11799 impB/mucB/samB family C-terminal domain NPD12_2847 PF11798 IMS family HHH motif NPD12_2848 PF01180 Dihydroorotate dehydrogenase NPD12_2849 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_2849 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_2850 PF00156 Phosphoribosyl transferase domain NPD12_2853 PF17755 UvrA DNA-binding domain NPD12_2853 PF17760 UvrA interaction domain NPD12_2853 PF00005 ABC transporter NPD12_2856 PF00672 HAMP domain NPD12_2856 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2856 PF12729 Four helix bundle sensory module for signal transduction NPD12_2857 PF13344 Haloacid dehalogenase-like hydrolase NPD12_2857 PF00293 NUDIX domain NPD12_2858 PF01475 Ferric uptake regulator family NPD12_286 PF00117 Glutamine amidotransferase class-I NPD12_286 PF06418 CTP synthase N-terminus NPD12_2860 PF00041 Fibronectin type III domain NPD12_2860 PF00704 Glycosyl hydrolases family 18 NPD12_2861 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NPD12_2862 PF01979 Amidohydrolase family NPD12_2864 PF03123 CAT RNA binding domain NPD12_2864 PF00874 PRD domain NPD12_2865 PF02378 Phosphotransferase system, EIIC NPD12_2865 PF00367 phosphotransferase system, EIIB NPD12_2865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_2866 PF02378 Phosphotransferase system, EIIC NPD12_2866 PF00367 phosphotransferase system, EIIB NPD12_2867 PF01554 MatE NPD12_2868 PF01458 Uncharacterized protein family (UPF0051) NPD12_2869 PF00005 ABC transporter NPD12_2869 PF08402 TOBE domain NPD12_2871 PF01475 Ferric uptake regulator family NPD12_2872 PF01554 MatE NPD12_2873 PF00258 Flavodoxin NPD12_2873 PF00753 Metallo-beta-lactamase superfamily NPD12_2874 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_2874 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_2874 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_2875 PF00665 Integrase core domain NPD12_2875 PF13333 Integrase core domain NPD12_2877 PF03610 PTS system fructose IIA component NPD12_2877 PF03830 PTS system sorbose subfamily IIB component NPD12_2878 PF03610 PTS system fructose IIA component NPD12_2878 PF03830 PTS system sorbose subfamily IIB component NPD12_2879 PF03609 PTS system sorbose-specific iic component NPD12_288 PF07498 Rho termination factor, N-terminal domain NPD12_288 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_288 PF07497 Rho termination factor, RNA-binding domain NPD12_2880 PF03613 PTS system mannose/fructose/sorbose family IID component NPD12_2882 PF01144 Coenzyme A transferase NPD12_2883 PF01144 Coenzyme A transferase NPD12_2884 PF12804 MobA-like NTP transferase domain NPD12_2885 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_2885 PF01799 [2Fe-2S] binding domain NPD12_2887 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_2887 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_2888 PF00232 Glycosyl hydrolase family 1 NPD12_2889 PF00232 Glycosyl hydrolase family 1 NPD12_289 PF01197 Ribosomal protein L31 NPD12_2890 PF00999 Sodium/hydrogen exchanger family NPD12_2897 PF04055 Radical SAM superfamily NPD12_2898 PF12848 ABC transporter NPD12_2898 PF00005 ABC transporter NPD12_29 PF00672 HAMP domain NPD12_29 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_29 PF02743 Cache domain NPD12_290 PF00265 Thymidine kinase NPD12_291 PF07136 Protein of unknown function (DUF1385) NPD12_2911 PF04055 Radical SAM superfamily NPD12_2911 PF13186 Iron-sulfur cluster-binding domain NPD12_2913 PF00664 ABC transporter transmembrane region NPD12_2913 PF00005 ABC transporter NPD12_2914 PF05958 tRNA (Uracil-5-)-methyltransferase NPD12_2916 PF00884 Sulfatase NPD12_2917 PF01925 Sulfite exporter TauE/SafE NPD12_2918 PF00885 6,7-dimethyl-8-ribityllumazine synthase NPD12_2919 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NPD12_2919 PF00925 GTP cyclohydrolase II NPD12_292 PF17827 PrmC N-terminal domain NPD12_292 PF05175 Methyltransferase small domain NPD12_2920 PF00677 Lumazine binding domain NPD12_2921 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_2921 PF01872 RibD C-terminal domain NPD12_2922 PF01546 Peptidase family M20/M25/M40 NPD12_2922 PF07687 Peptidase dimerisation domain NPD12_2923 PF00753 Metallo-beta-lactamase superfamily NPD12_2923 PF16123 Hydroxyacylglutathione hydrolase C-terminus NPD12_2924 PF00689 Cation transporting ATPase, C-terminus NPD12_2924 PF00690 Cation transporter/ATPase, N-terminus NPD12_2926 PF02844 Phosphoribosylglycinamide synthetase, N domain NPD12_2926 PF02843 Phosphoribosylglycinamide synthetase, C domain NPD12_2926 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NPD12_2927 PF01808 AICARFT/IMPCHase bienzyme NPD12_2927 PF02142 MGS-like domain NPD12_2928 PF00551 Formyl transferase NPD12_2929 PF00586 AIR synthase related protein, N-terminal domain NPD12_2929 PF02769 AIR synthase related protein, C-terminal domain NPD12_293 PF03462 PCRF domain NPD12_293 PF00472 RF-1 domain NPD12_2930 PF00156 Phosphoribosyl transferase domain NPD12_2931 PF01259 SAICAR synthetase NPD12_2932 PF00731 AIR carboxylase NPD12_2933 PF01799 [2Fe-2S] binding domain NPD12_2933 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_2933 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_2933 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_2934 PF01546 Peptidase family M20/M25/M40 NPD12_2934 PF07687 Peptidase dimerisation domain NPD12_2935 PF01979 Amidohydrolase family NPD12_2936 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_2936 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_2937 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPD12_2937 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPD12_2938 PF01979 Amidohydrolase family NPD12_2939 PF00860 Permease family NPD12_2940 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_2943 PF12804 MobA-like NTP transferase domain NPD12_2943 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2944 PF13478 XdhC Rossmann domain NPD12_2944 PF02625 XdhC and CoxI family NPD12_2948 PF00005 ABC transporter NPD12_2954 PF00860 Permease family NPD12_2955 PF01235 Sodium:alanine symporter family NPD12_2956 PF13538 UvrD-like helicase C-terminal domain NPD12_2959 PF01546 Peptidase family M20/M25/M40 NPD12_296 PF03481 Putative GTP-binding controlling metal-binding NPD12_296 PF01300 Telomere recombination NPD12_2960 PF13185 GAF domain NPD12_2961 PF03471 Transporter associated domain NPD12_2961 PF01595 Cyclin M transmembrane N-terminal domain NPD12_2961 PF00571 CBS domain NPD12_2962 PF01910 Thiamine-binding protein NPD12_2963 PF01964 Radical SAM ThiC family NPD12_2964 PF00156 Phosphoribosyl transferase domain NPD12_2968 PF00005 ABC transporter NPD12_2969 PF00392 Bacterial regulatory proteins, gntR family NPD12_297 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPD12_2970 PF17099 Tryptophan transporter TrpP NPD12_2972 PF00325 Bacterial regulatory proteins, crp family NPD12_2972 PF00027 Cyclic nucleotide-binding domain NPD12_2973 PF07486 Cell Wall Hydrolase NPD12_2976 PF01061 ABC-2 type transporter NPD12_2977 PF03009 Glycerophosphoryl diester phosphodiesterase family NPD12_2979 PF00282 Pyridoxal-dependent decarboxylase conserved domain NPD12_298 PF02502 Ribose/Galactose Isomerase NPD12_2980 PF03471 Transporter associated domain NPD12_2980 PF00571 CBS domain NPD12_2980 PF01595 Cyclin M transmembrane N-terminal domain NPD12_2983 PF01784 NIF3 (NGG1p interacting factor 3) NPD12_2986 PF03979 Sigma-70 factor, region 1.1 NPD12_2986 PF04539 Sigma-70 region 3 NPD12_2986 PF04545 Sigma-70, region 4 NPD12_2986 PF00140 Sigma-70 factor, region 1.2 NPD12_2986 PF04542 Sigma-70 region 2 NPD12_2987 PF08275 DNA primase catalytic core, N-terminal domain NPD12_2987 PF01807 CHC2 zinc finger NPD12_2987 PF10410 DnaB-helicase binding domain of primase NPD12_2988 PF13286 Phosphohydrolase-associated domain NPD12_2988 PF01966 HD domain NPD12_2990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NPD12_2990 PF02896 PEP-utilising enzyme, TIM barrel domain NPD12_2990 PF00391 PEP-utilising enzyme, mobile domain NPD12_2991 PF00571 CBS domain NPD12_2991 PF08279 HTH domain NPD12_2992 PF00889 Elongation factor TS NPD12_2993 PF02565 Recombination protein O C terminal NPD12_2993 PF11967 Recombination protein O N terminal NPD12_2994 PF01926 50S ribosome-binding GTPase NPD12_2994 PF07650 KH domain NPD12_2995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_2997 PF02130 Uncharacterized protein family UPF0054 NPD12_2998 PF07698 7TM receptor with intracellular HD hydrolase NPD12_2998 PF07697 7TM-HD extracellular NPD12_2998 PF01966 HD domain NPD12_3 PF01479 S4 domain NPD12_3001 PF09424 Yqey-like protein NPD12_3002 PF01165 Ribosomal protein S21 NPD12_3003 PF01230 HIT domain NPD12_3004 PF01938 TRAM domain NPD12_3004 PF04055 Radical SAM superfamily NPD12_3004 PF00919 Uncharacterized protein family UPF0004 NPD12_3005 PF04452 RNA methyltransferase NPD12_3007 PF00226 DnaJ domain NPD12_3007 PF01556 DnaJ C terminal domain NPD12_3007 PF00684 DnaJ central domain NPD12_3008 PF00012 Hsp70 protein NPD12_3009 PF01025 GrpE NPD12_3010 PF01628 HrcA protein C terminal domain NPD12_3011 PF06969 HemN C-terminal domain NPD12_3011 PF04055 Radical SAM superfamily NPD12_3012 PF03144 Elongation factor Tu domain 2 NPD12_3012 PF00009 Elongation factor Tu GTP binding domain NPD12_3012 PF00679 Elongation factor G C-terminus NPD12_3012 PF06421 GTP-binding protein LepA C-terminus NPD12_3015 PF03418 Germination protease NPD12_3016 PF01649 Ribosomal protein S20 NPD12_302 PF00953 Glycosyl transferase family 4 NPD12_3020 PF00689 Cation transporting ATPase, C-terminus NPD12_3020 PF00690 Cation transporter/ATPase, N-terminus NPD12_3021 PF07556 Protein of unknown function (DUF1538) NPD12_3027 PF05105 Bacteriophage holin family NPD12_303 PF02350 UDP-N-acetylglucosamine 2-epimerase NPD12_3033 PF04865 Baseplate J-like protein NPD12_3041 PF09393 Phage tail tube protein NPD12_3042 PF17482 Phage tail sheath C-terminal domain NPD12_3042 PF04984 Phage tail sheath protein subtilisin-like domain NPD12_3042 PF17481 Phage tail sheath protein beta-sandwich domain NPD12_305 PF00119 ATP synthase A chain NPD12_3055 PF03592 Terminase small subunit NPD12_306 PF00137 ATP synthase subunit C NPD12_3065 PF01367 5'-3' exonuclease, C-terminal SAM fold NPD12_3065 PF01612 3'-5' exonuclease NPD12_3065 PF00476 DNA polymerase family A NPD12_3065 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NPD12_307 PF00430 ATP synthase B/B' CF(0) NPD12_3078 PF14659 Phage integrase, N-terminal SAM-like domain NPD12_3078 PF00589 Phage integrase family NPD12_308 PF00213 ATP synthase delta (OSCP) subunit NPD12_3080 PF09105 Elongation factor SelB, winged helix NPD12_3080 PF03144 Elongation factor Tu domain 2 NPD12_3080 PF00009 Elongation factor Tu GTP binding domain NPD12_3080 PF09107 Elongation factor SelB, winged helix NPD12_3080 PF09106 Elongation factor SelB, winged helix NPD12_3081 PF12390 Selenocysteine synthase N terminal NPD12_3081 PF03841 L-seryl-tRNA selenium transferase NPD12_3082 PF02769 AIR synthase related protein, C-terminal domain NPD12_3082 PF00586 AIR synthase related protein, N-terminal domain NPD12_3085 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_3085 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_3086 PF01479 S4 domain NPD12_3086 PF00849 RNA pseudouridylate synthase NPD12_3087 PF01042 Endoribonuclease L-PSP NPD12_3088 PF03816 Cell envelope-related transcriptional attenuator domain NPD12_3089 PF01966 HD domain NPD12_309 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_309 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_309 PF00306 ATP synthase alpha/beta chain, C terminal domain NPD12_3090 PF01467 Cytidylyltransferase-like NPD12_3091 PF01985 CRS1 / YhbY (CRM) domain NPD12_3092 PF09269 Domain of unknown function (DUF1967) NPD12_3092 PF01018 GTP1/OBG NPD12_3092 PF01926 50S ribosome-binding GTPase NPD12_3093 PF01016 Ribosomal L27 protein NPD12_3095 PF00829 Ribosomal prokaryotic L21 protein NPD12_3096 PF10150 Ribonuclease E/G family NPD12_3096 PF00575 S1 RNA binding domain NPD12_3099 PF02163 Peptidase family M50 NPD12_3099 PF00571 CBS domain NPD12_310 PF00231 ATP synthase NPD12_3100 PF04225 Opacity-associated protein A LysM-like domain NPD12_3100 PF01551 Peptidase family M23 NPD12_3101 PF01098 Cell cycle protein NPD12_3102 PF03776 Septum formation topological specificity factor MinE NPD12_3103 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPD12_3104 PF03775 Septum formation inhibitor MinC, C-terminal domain NPD12_3109 PF04002 RadC-like JAB domain NPD12_311 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_311 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_3110 PF02545 Maf-like protein NPD12_3115 PF13291 ACT domain NPD12_3118 PF01121 Dephospho-CoA kinase NPD12_3119 PF00476 DNA polymerase family A NPD12_3119 PF01367 5'-3' exonuclease, C-terminal SAM fold NPD12_3119 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NPD12_312 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NPD12_312 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NPD12_3120 PF01264 Chorismate synthase NPD12_314 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPD12_3148 PF01695 IstB-like ATP binding protein NPD12_315 PF08486 Stage II sporulation protein NPD12_3155 PF03062 MBOAT, membrane-bound O-acyltransferase family NPD12_3157 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_3163 PF01336 OB-fold nucleic acid binding domain NPD12_3163 PF00152 tRNA synthetases class II (D, K and N) NPD12_3163 PF02938 GAD domain NPD12_3164 PF03129 Anticodon binding domain NPD12_3164 PF13393 Histidyl-tRNA synthetase NPD12_3165 PF04055 Radical SAM superfamily NPD12_3166 PF00753 Metallo-beta-lactamase superfamily NPD12_3167 PF02580 D-Tyr-tRNA(Tyr) deacylase NPD12_3168 PF02824 TGS domain NPD12_3168 PF04607 Region found in RelA / SpoT proteins NPD12_3168 PF13291 ACT domain NPD12_3169 PF00156 Phosphoribosyl transferase domain NPD12_317 PF12116 Stage III sporulation protein D NPD12_3171 PF07549 SecD/SecF GG Motif NPD12_3171 PF02355 Protein export membrane protein NPD12_3172 PF02355 Protein export membrane protein NPD12_3172 PF07549 SecD/SecF GG Motif NPD12_3176 PF02699 Preprotein translocase subunit NPD12_3177 PF01702 Queuine tRNA-ribosyltransferase NPD12_3178 PF02547 Queuosine biosynthesis protein NPD12_3179 PF17864 RuvB AAA lid domain NPD12_3179 PF05491 RuvB C-terminal winged helix domain NPD12_3179 PF05496 Holliday junction DNA helicase RuvB P-loop domain NPD12_3180 PF07499 RuvA, C-terminal domain NPD12_3180 PF01330 RuvA N terminal domain NPD12_3182 PF01709 Transcriptional regulator NPD12_3183 PF09186 Domain of unknown function (DUF1949) NPD12_3183 PF01205 Uncharacterized protein family UPF0029 NPD12_3185 PF00155 Aminotransferase class I and II NPD12_3185 PF00392 Bacterial regulatory proteins, gntR family NPD12_3188 PF00301 Rubredoxin NPD12_3189 PF13167 GTP-binding GTPase N-terminal NPD12_3189 PF16360 GTP-binding GTPase Middle Region NPD12_3189 PF01926 50S ribosome-binding GTPase NPD12_319 PF06866 Protein of unknown function (DUF1256) NPD12_3192 PF00912 Transglycosylase NPD12_3192 PF00905 Penicillin binding protein transpeptidase domain NPD12_3193 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NPD12_3194 PF07451 Stage V sporulation protein AD (SpoVAD) NPD12_3195 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NPD12_3196 PF04542 Sigma-70 region 2 NPD12_3196 PF04539 Sigma-70 region 3 NPD12_3196 PF04545 Sigma-70, region 4 NPD12_3197 PF13581 Histidine kinase-like ATPase domain NPD12_3198 PF01740 STAS domain NPD12_3199 PF02384 N-6 DNA Methylase NPD12_32 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NPD12_320 PF01171 PP-loop family NPD12_3200 PF01522 Polysaccharide deacetylase NPD12_3201 PF03808 Glycosyl transferase WecB/TagA/CpsF family NPD12_3202 PF02397 Bacterial sugar transferase NPD12_3204 PF03023 Lipid II flippase MurJ NPD12_3206 PF00534 Glycosyl transferases group 1 NPD12_3206 PF13439 Glycosyltransferase Family 4 NPD12_3208 PF13579 Glycosyl transferase 4-like domain NPD12_3209 PF02350 UDP-N-acetylglucosamine 2-epimerase NPD12_3210 PF13439 Glycosyltransferase Family 4 NPD12_3210 PF00534 Glycosyl transferases group 1 NPD12_3214 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_3214 PF01943 Polysaccharide biosynthesis protein NPD12_3216 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPD12_3216 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPD12_3217 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPD12_3217 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NPD12_3217 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NPD12_3218 PF02719 Polysaccharide biosynthesis protein NPD12_3219 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPD12_3220 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3220 PF00395 S-layer homology domain NPD12_3221 PF08239 Bacterial SH3 domain NPD12_3221 PF05036 Sporulation related domain NPD12_3221 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPD12_3222 PF00483 Nucleotidyl transferase NPD12_3224 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPD12_3224 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPD12_3224 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPD12_3224 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPD12_3225 PF14693 Ribosomal protein TL5, C-terminal domain NPD12_3225 PF01386 Ribosomal L25p family NPD12_3226 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NPD12_3226 PF01276 Orn/Lys/Arg decarboxylase, major domain NPD12_3228 PF01515 Phosphate acetyl/butaryl transferase NPD12_3229 PF01070 FMN-dependent dehydrogenase NPD12_3230 PF04463 Protein of unknown function (DUF523) NPD12_3231 PF01713 Smr domain NPD12_3231 PF00488 MutS domain V NPD12_3232 PF01136 Peptidase family U32 NPD12_3232 PF12392 Collagenase NPD12_3236 PF13181 Tetratricopeptide repeat NPD12_3236 PF00535 Glycosyl transferase family 2 NPD12_3238 PF01588 Putative tRNA binding domain NPD12_3238 PF03483 B3/4 domain NPD12_3238 PF03484 tRNA synthetase B5 domain NPD12_3238 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NPD12_3238 PF03147 Ferredoxin-fold anticodon binding domain NPD12_3239 PF01409 tRNA synthetases class II core domain (F) NPD12_3239 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NPD12_3240 PF08032 RNA 2'-O ribose methyltransferase substrate binding NPD12_3240 PF00588 SpoU rRNA Methylase family NPD12_3241 PF02254 TrkA-N domain NPD12_3241 PF02080 TrkA-C domain NPD12_3242 PF02386 Cation transport protein NPD12_3243 PF00453 Ribosomal protein L20 NPD12_3244 PF01632 Ribosomal protein L35 NPD12_3245 PF00707 Translation initiation factor IF-3, C-terminal domain NPD12_3245 PF05198 Translation initiation factor IF-3, N-terminal domain NPD12_3246 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPD12_3246 PF02824 TGS domain NPD12_3246 PF03129 Anticodon binding domain NPD12_3246 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3250 PF00005 ABC transporter NPD12_3250 PF13732 Domain of unknown function (DUF4162) NPD12_3256 PF01430 Hsp33 protein NPD12_3257 PF13649 Methyltransferase domain NPD12_3259 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_3259 PF00005 ABC transporter NPD12_326 PF02773 S-adenosylmethionine synthetase, C-terminal domain NPD12_326 PF02772 S-adenosylmethionine synthetase, central domain NPD12_326 PF00438 S-adenosylmethionine synthetase, N-terminal domain NPD12_3260 PF00005 ABC transporter NPD12_3260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_3261 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3261 PF12911 N-terminal TM domain of oligopeptide transport permease C NPD12_3262 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3263 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_3264 PF01118 Semialdehyde dehydrogenase, NAD binding domain NPD12_3264 PF02774 Semialdehyde dehydrogenase, dimerisation domain NPD12_3265 PF00701 Dihydrodipicolinate synthetase family NPD12_3266 PF05173 Dihydrodipicolinate reductase, C-terminus NPD12_3266 PF01113 Dihydrodipicolinate reductase, N-terminus NPD12_3267 PF00155 Aminotransferase class I and II NPD12_3268 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_3268 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal NPD12_3268 PF14602 Hexapeptide repeat of succinyl-transferase NPD12_327 PF14490 Helix-hairpin-helix containing domain NPD12_327 PF13538 UvrD-like helicase C-terminal domain NPD12_327 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NPD12_3271 PF01522 Polysaccharide deacetylase NPD12_3275 PF08245 Mur ligase middle domain NPD12_3275 PF02875 Mur ligase family, glutamate ligase domain NPD12_3276 PF08264 Anticodon-binding domain of tRNA NPD12_3276 PF10458 Valyl tRNA synthetase tRNA binding arm NPD12_3276 PF00133 tRNA synthetases class I (I, L, M and V) NPD12_3277 PF00583 Acetyltransferase (GNAT) family NPD12_3278 PF00005 ABC transporter NPD12_3282 PF00005 ABC transporter NPD12_3283 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3286 PF02631 RecX family NPD12_3287 PF00675 Insulinase (Peptidase family M16) NPD12_3287 PF05193 Peptidase M16 inactive domain NPD12_3292 PF06865 Pyrimidine/purine nucleoside phosphorylase NPD12_3293 PF14748 Pyrroline-5-carboxylate reductase dimerisation NPD12_3293 PF03807 NADP oxidoreductase coenzyme F420-dependent NPD12_3294 PF02901 Pyruvate formate lyase-like NPD12_3294 PF01228 Glycine radical NPD12_3295 PF04055 Radical SAM superfamily NPD12_3297 PF00533 BRCA1 C Terminus (BRCT) domain NPD12_3297 PF01653 NAD-dependent DNA ligase adenylation domain NPD12_3297 PF03120 NAD-dependent DNA ligase OB-fold domain NPD12_3297 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NPD12_3297 PF12826 Helix-hairpin-helix motif NPD12_33 PF01177 Asp/Glu/Hydantoin racemase NPD12_330 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NPD12_330 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NPD12_3300 PF07728 AAA domain (dynein-related subfamily) NPD12_3300 PF12592 Protein of unknown function (DUF3763) NPD12_3300 PF17868 AAA lid domain NPD12_3306 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3307 PF02954 Bacterial regulatory protein, Fis family NPD12_3307 PF00158 Sigma-54 interaction domain NPD12_3307 PF13426 PAS domain NPD12_3308 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_3308 PF01012 Electron transfer flavoprotein domain NPD12_3309 PF01012 Electron transfer flavoprotein domain NPD12_331 PF07516 SecA Wing and Scaffold domain NPD12_331 PF01043 SecA preprotein cross-linking domain NPD12_331 PF07517 SecA DEAD-like domain NPD12_331 PF02810 SEC-C motif NPD12_3310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_3310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_3310 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_3311 PF02803 Thiolase, C-terminal domain NPD12_3311 PF00108 Thiolase, N-terminal domain NPD12_3312 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NPD12_3312 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NPD12_3313 PF00378 Enoyl-CoA hydratase/isomerase NPD12_3315 PF02151 UvrB/uvrC motif NPD12_3315 PF12826 Helix-hairpin-helix motif NPD12_3315 PF08459 UvrC Helix-hairpin-helix N-terminal NPD12_3315 PF01541 GIY-YIG catalytic domain NPD12_3316 PF00860 Permease family NPD12_3317 PF01966 HD domain NPD12_3319 PF01790 Prolipoprotein diacylglyceryl transferase NPD12_332 PF00472 RF-1 domain NPD12_332 PF03462 PCRF domain NPD12_3322 PF03009 Glycerophosphoryl diester phosphodiesterase family NPD12_3323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_3323 PF00672 HAMP domain NPD12_3323 PF02743 Cache domain NPD12_3324 PF02915 Rubrerythrin NPD12_3326 PF04055 Radical SAM superfamily NPD12_3327 PF02901 Pyruvate formate lyase-like NPD12_3327 PF01228 Glycine radical NPD12_3329 PF14693 Ribosomal protein TL5, C-terminal domain NPD12_3329 PF01386 Ribosomal L25p family NPD12_3331 PF01475 Ferric uptake regulator family NPD12_3334 PF13280 WYL domain NPD12_3334 PF08279 HTH domain NPD12_3338 PF01926 50S ribosome-binding GTPase NPD12_3339 PF02190 ATP-dependent protease La (LON) substrate-binding domain NPD12_3339 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_3339 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_334 PF16921 Tex protein YqgF-like domain NPD12_334 PF17674 HHH domain NPD12_334 PF00575 S1 RNA binding domain NPD12_334 PF09371 Tex-like protein N-terminal domain NPD12_3340 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_3340 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3341 PF10431 C-terminal, D2-small domain, of ClpB protein NPD12_3341 PF06689 ClpX C4-type zinc finger NPD12_3341 PF07724 AAA domain (Cdc48 subfamily) NPD12_3342 PF00574 Clp protease NPD12_3343 PF05697 Bacterial trigger factor protein (TF) NPD12_3343 PF05698 Bacterial trigger factor protein (TF) C-terminus NPD12_3343 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NPD12_3344 PF01261 Xylose isomerase-like TIM barrel NPD12_3346 PF00156 Phosphoribosyl transferase domain NPD12_3347 PF01180 Dihydroorotate dehydrogenase NPD12_3348 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_3349 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NPD12_335 PF12822 ECF transporter, substrate-specific component NPD12_3350 PF01979 Amidohydrolase family NPD12_3351 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NPD12_3351 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NPD12_3352 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPD12_3352 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPD12_3353 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3355 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3356 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3358 PF00005 ABC transporter NPD12_3359 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_339 PF01022 Bacterial regulatory protein, arsR family NPD12_3390 PF01725 Ham1 family NPD12_3393 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_3394 PF02934 GatB/GatE catalytic domain NPD12_3394 PF02637 GatB domain NPD12_3395 PF01425 Amidase NPD12_3396 PF02686 Glu-tRNAGln amidotransferase C subunit NPD12_3399 PF00533 BRCA1 C Terminus (BRCT) domain NPD12_3399 PF12826 Helix-hairpin-helix motif NPD12_3399 PF01653 NAD-dependent DNA ligase adenylation domain NPD12_3399 PF03120 NAD-dependent DNA ligase OB-fold domain NPD12_34 PF00120 Glutamine synthetase, catalytic domain NPD12_340 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_3400 PF13361 UvrD-like helicase C-terminal domain NPD12_3400 PF00580 UvrD/REP helicase N-terminal domain NPD12_3401 PF01371 Trp repressor protein NPD12_3402 PF01479 S4 domain NPD12_3402 PF00849 RNA pseudouridylate synthase NPD12_3403 PF01464 Transglycosylase SLT domain NPD12_3406 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NPD12_3407 PF00342 Phosphoglucose isomerase NPD12_3409 PF00440 Bacterial regulatory proteins, tetR family NPD12_3409 PF17934 Tetracyclin repressor-like, C-terminal domain NPD12_3411 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_3411 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_3412 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_3412 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_3414 PF13237 4Fe-4S dicluster domain NPD12_3414 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_3414 PF01012 Electron transfer flavoprotein domain NPD12_3415 PF01012 Electron transfer flavoprotein domain NPD12_3416 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_3416 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_3416 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_3417 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3418 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3419 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_342 PF04607 Region found in RelA / SpoT proteins NPD12_3420 PF02515 CoA-transferase family III NPD12_3421 PF00501 AMP-binding enzyme NPD12_3421 PF13193 AMP-binding enzyme C-terminal domain NPD12_3422 PF05525 Branched-chain amino acid transport protein NPD12_3423 PF02540 NAD synthase NPD12_3423 PF00958 GMP synthase C terminal domain NPD12_3423 PF00117 Glutamine amidotransferase class-I NPD12_3424 PF00478 IMP dehydrogenase / GMP reductase domain NPD12_3424 PF00571 CBS domain NPD12_3425 PF01171 PP-loop family NPD12_3426 PF00118 TCP-1/cpn60 chaperonin family NPD12_3427 PF00166 Chaperonin 10 Kd subunit NPD12_3428 PF09335 SNARE associated Golgi protein NPD12_343 PF09334 tRNA synthetases class I (M) NPD12_343 PF13603 Leucyl-tRNA synthetase, Domain 2 NPD12_343 PF08264 Anticodon-binding domain of tRNA NPD12_343 PF00133 tRNA synthetases class I (I, L, M and V) NPD12_3432 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_3432 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_3432 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NPD12_3433 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_3433 PF00175 Oxidoreductase NAD-binding domain NPD12_3434 PF06971 Putative DNA-binding protein N-terminus NPD12_3434 PF02629 CoA binding domain NPD12_3435 PF12848 ABC transporter NPD12_3435 PF16326 ABC transporter C-terminal domain NPD12_3435 PF00005 ABC transporter NPD12_3436 PF00072 Response regulator receiver domain NPD12_3436 PF04397 LytTr DNA-binding domain NPD12_3437 PF07694 5TMR of 5TMR-LYT NPD12_3437 PF06580 Histidine kinase NPD12_3438 PF02554 Carbon starvation protein CstA NPD12_3439 PF08367 Peptidase M16C associated NPD12_3439 PF05193 Peptidase M16 inactive domain NPD12_3439 PF00675 Insulinase (Peptidase family M16) NPD12_344 PF00581 Rhodanese-like domain NPD12_3440 PF00289 Biotin carboxylase, N-terminal domain NPD12_3440 PF02436 Conserved carboxylase domain NPD12_3440 PF00682 HMGL-like NPD12_3440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_3440 PF00364 Biotin-requiring enzyme NPD12_3440 PF02785 Biotin carboxylase C-terminal domain NPD12_3441 PF00814 Glycoprotease family NPD12_3443 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_3443 PF04324 BFD-like [2Fe-2S] binding domain NPD12_3447 PF01297 Zinc-uptake complex component A periplasmic NPD12_3448 PF01966 HD domain NPD12_3449 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NPD12_3450 PF00814 Glycoprotease family NPD12_3451 PF00583 Acetyltransferase (GNAT) family NPD12_3452 PF00579 tRNA synthetases class I (W and Y) NPD12_3452 PF01479 S4 domain NPD12_3458 PF16658 Class II release factor RF3, C-terminal domain NPD12_3458 PF03144 Elongation factor Tu domain 2 NPD12_3458 PF00009 Elongation factor Tu GTP binding domain NPD12_3460 PF00579 tRNA synthetases class I (W and Y) NPD12_3461 PF01880 Desulfoferrodoxin NPD12_3461 PF06397 Desulfoferrodoxin, N-terminal domain NPD12_3463 PF00082 Subtilase family NPD12_347 PF01556 DnaJ C terminal domain NPD12_347 PF00684 DnaJ central domain NPD12_347 PF00226 DnaJ domain NPD12_3470 PF00005 ABC transporter NPD12_3475 PF00005 ABC transporter NPD12_3475 PF00664 ABC transporter transmembrane region NPD12_3476 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NPD12_3476 PF06165 Glycosyltransferase family 36 NPD12_3476 PF10091 Putative glucoamylase NPD12_3477 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NPD12_3477 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NPD12_3478 PF13840 ACT domain NPD12_3478 PF00696 Amino acid kinase family NPD12_3479 PF02127 Aminopeptidase I zinc metalloprotease (M18) NPD12_3480 PF01545 Cation efflux family NPD12_3480 PF16916 Dimerisation domain of Zinc Transporter NPD12_3482 PF13538 UvrD-like helicase C-terminal domain NPD12_3483 PF01434 Peptidase family M41 NPD12_3483 PF06480 FtsH Extracellular NPD12_3483 PF17862 AAA+ lid domain NPD12_3483 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3484 PF01546 Peptidase family M20/M25/M40 NPD12_3485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3485 PF09180 Prolyl-tRNA synthetase, C-terminal NPD12_3485 PF03129 Anticodon binding domain NPD12_3486 PF01541 GIY-YIG catalytic domain NPD12_3489 PF00005 ABC transporter NPD12_3489 PF13732 Domain of unknown function (DUF4162) NPD12_3491 PF08281 Sigma-70, region 4 NPD12_3491 PF04542 Sigma-70 region 2 NPD12_3492 PF01740 STAS domain NPD12_3492 PF00916 Sulfate permease family NPD12_3493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_3493 PF00512 His Kinase A (phospho-acceptor) domain NPD12_3494 PF00072 Response regulator receiver domain NPD12_3494 PF00486 Transcriptional regulatory protein, C terminal NPD12_3496 PF00005 ABC transporter NPD12_3500 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3501 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NPD12_3502 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_3503 PF00158 Sigma-54 interaction domain NPD12_3503 PF00874 PRD domain NPD12_3503 PF03610 PTS system fructose IIA component NPD12_3504 PF02378 Phosphotransferase system, EIIC NPD12_3505 PF02056 Family 4 glycosyl hydrolase NPD12_3505 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_3506 PF00563 EAL domain NPD12_3506 PF01590 GAF domain NPD12_3506 PF00990 Diguanylate cyclase, GGDEF domain NPD12_3506 PF00360 Phytochrome region NPD12_3507 PF00589 Phage integrase family NPD12_3507 PF02899 Phage integrase, N-terminal SAM-like domain NPD12_3508 PF02675 S-adenosylmethionine decarboxylase NPD12_351 PF01116 Fructose-bisphosphate aldolase class-II NPD12_3511 PF01638 HxlR-like helix-turn-helix NPD12_3514 PF00248 Aldo/keto reductase family NPD12_3515 PF03358 NADPH-dependent FMN reductase NPD12_3516 PF13411 MerR HTH family regulatory protein NPD12_3517 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_3519 PF12833 Helix-turn-helix domain NPD12_3519 PF06445 GyrI-like small molecule binding domain NPD12_3520 PF01872 RibD C-terminal domain NPD12_3522 PF02082 Transcriptional regulator NPD12_3523 PF00583 Acetyltransferase (GNAT) family NPD12_3524 PF05958 tRNA (Uracil-5-)-methyltransferase NPD12_3524 PF01938 TRAM domain NPD12_3527 PF00224 Pyruvate kinase, barrel domain NPD12_3527 PF02887 Pyruvate kinase, alpha/beta domain NPD12_3528 PF00365 Phosphofructokinase NPD12_3529 PF02811 PHP domain NPD12_3529 PF14579 Helix-hairpin-helix motif NPD12_3529 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NPD12_3529 PF01336 OB-fold nucleic acid binding domain NPD12_3529 PF07733 Bacterial DNA polymerase III alpha NTPase domain NPD12_353 PF04239 Protein of unknown function (DUF421) NPD12_3530 PF10298 WhiA N-terminal LAGLIDADG-like domain NPD12_3530 PF02650 WhiA C-terminal HTH domain NPD12_3530 PF14527 WhiA LAGLIDADG-like domain NPD12_3531 PF01933 Uncharacterised protein family UPF0052 NPD12_3532 PF03668 P-loop ATPase protein family NPD12_3533 PF01565 FAD binding domain NPD12_3533 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NPD12_3535 PF01541 GIY-YIG catalytic domain NPD12_3535 PF08459 UvrC Helix-hairpin-helix N-terminal NPD12_3535 PF02151 UvrB/uvrC motif NPD12_3535 PF12826 Helix-hairpin-helix motif NPD12_3536 PF04307 LexA-binding, inner membrane-associated putative hydrolase NPD12_3538 PF00905 Penicillin binding protein transpeptidase domain NPD12_3539 PF01098 Cell cycle protein NPD12_354 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_354 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPD12_354 PF02824 TGS domain NPD12_354 PF03129 Anticodon binding domain NPD12_3540 PF12401 Protein of unknown function (DUF2662) NPD12_3540 PF00498 FHA domain NPD12_3541 PF17760 UvrA interaction domain NPD12_3541 PF17755 UvrA DNA-binding domain NPD12_3542 PF02151 UvrB/uvrC motif NPD12_3542 PF12344 Ultra-violet resistance protein B NPD12_3542 PF00271 Helicase conserved C-terminal domain NPD12_3542 PF04851 Type III restriction enzyme, res subunit NPD12_3542 PF17757 UvrB interaction domain NPD12_3543 PF02163 Peptidase family M50 NPD12_3543 PF17820 PDZ domain NPD12_3544 PF03572 Peptidase family S41 NPD12_3544 PF17820 PDZ domain NPD12_3544 PF01471 Putative peptidoglycan binding domain NPD12_3545 PF18075 FtsX extracellular domain NPD12_3545 PF02687 FtsX-like permease family NPD12_3546 PF00005 ABC transporter NPD12_3547 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPD12_3547 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_3549 PF02779 Transketolase, pyrimidine binding domain NPD12_3549 PF02780 Transketolase, C-terminal domain NPD12_3550 PF00456 Transketolase, thiamine diphosphate binding domain NPD12_3551 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NPD12_3553 PF01168 Alanine racemase, N-terminal domain NPD12_3553 PF00842 Alanine racemase, C-terminal domain NPD12_3555 PF03853 YjeF-related protein N-terminus NPD12_3555 PF01256 Carbohydrate kinase NPD12_3556 PF01648 4'-phosphopantetheinyl transferase superfamily NPD12_3559 PF03631 Virulence factor BrkB NPD12_356 PF01066 CDP-alcohol phosphatidyltransferase NPD12_3561 PF01479 S4 domain NPD12_3561 PF00163 Ribosomal protein S4/S9 N-terminal domain NPD12_3562 PF00375 Sodium:dicarboxylate symporter family NPD12_3564 PF13411 MerR HTH family regulatory protein NPD12_3567 PF00080 Copper/zinc superoxide dismutase (SODC) NPD12_3568 PF01380 SIS domain NPD12_3569 PF00923 Transaldolase/Fructose-6-phosphate aldolase NPD12_357 PF00571 CBS domain NPD12_3570 PF13419 Haloacid dehalogenase-like hydrolase NPD12_3571 PF00106 short chain dehydrogenase NPD12_3572 PF03829 PTS system glucitol/sorbitol-specific IIA component NPD12_3573 PF03612 Sorbitol phosphotransferase enzyme II N-terminus NPD12_3573 PF07663 Sorbitol phosphotransferase enzyme II C-terminus NPD12_3574 PF03608 PTS system enzyme II sorbitol-specific factor NPD12_3576 PF08240 Alcohol dehydrogenase GroES-like domain NPD12_3576 PF00107 Zinc-binding dehydrogenase NPD12_3577 PF04198 Putative sugar-binding domain NPD12_3577 PF13936 Helix-turn-helix domain NPD12_3578 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPD12_3578 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPD12_3578 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPD12_3578 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPD12_358 PF00781 Diacylglycerol kinase catalytic domain NPD12_3581 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NPD12_3581 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NPD12_3581 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NPD12_3584 PF00871 Acetokinase family NPD12_3585 PF01515 Phosphate acetyl/butaryl transferase NPD12_3586 PF00871 Acetokinase family NPD12_3589 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPD12_3590 PF07486 Cell Wall Hydrolase NPD12_3591 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_3592 PF00085 Thioredoxin NPD12_3593 PF01979 Amidohydrolase family NPD12_3596 PF05524 PEP-utilising enzyme, N-terminal NPD12_3596 PF00391 PEP-utilising enzyme, mobile domain NPD12_3596 PF02896 PEP-utilising enzyme, TIM barrel domain NPD12_3597 PF00158 Sigma-54 interaction domain NPD12_3597 PF00989 PAS fold NPD12_3597 PF02954 Bacterial regulatory protein, Fis family NPD12_36 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPD12_360 PF04055 Radical SAM superfamily NPD12_360 PF08497 Radical SAM N-terminal NPD12_360 PF11842 Domain of unknown function (DUF3362) NPD12_3600 PF05683 Fumarase C-terminus NPD12_3600 PF05681 Fumarate hydratase (Fumerase) NPD12_3601 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3602 PF02690 Na+/Pi-cotransporter NPD12_3603 PF00380 Ribosomal protein S9/S16 NPD12_3604 PF00572 Ribosomal protein L13 NPD12_3605 PF01416 tRNA pseudouridine synthase NPD12_3606 PF02361 Cobalt transport protein NPD12_3607 PF00005 ABC transporter NPD12_3608 PF00005 ABC transporter NPD12_3609 PF01196 Ribosomal protein L17 NPD12_3610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NPD12_3610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NPD12_3610 PF01000 RNA polymerase Rpb3/RpoA insert domain NPD12_3611 PF00163 Ribosomal protein S4/S9 N-terminal domain NPD12_3611 PF01479 S4 domain NPD12_3612 PF00411 Ribosomal protein S11 NPD12_3613 PF00416 Ribosomal protein S13/S18 NPD12_3614 PF00444 Ribosomal protein L36 NPD12_3615 PF01176 Translation initiation factor 1A / IF-1 NPD12_3617 PF00557 Metallopeptidase family M24 NPD12_3618 PF05191 Adenylate kinase, active site lid NPD12_3619 PF00344 SecY translocase NPD12_362 PF01471 Putative peptidoglycan binding domain NPD12_362 PF07486 Cell Wall Hydrolase NPD12_3620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NPD12_3621 PF00327 Ribosomal protein L30p/L7e NPD12_3622 PF03719 Ribosomal protein S5, C-terminal domain NPD12_3622 PF00333 Ribosomal protein S5, N-terminal domain NPD12_3623 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NPD12_3624 PF00347 Ribosomal protein L6 NPD12_3625 PF00410 Ribosomal protein S8 NPD12_3626 PF00253 Ribosomal protein S14p/S29e NPD12_3627 PF00281 Ribosomal protein L5 NPD12_3627 PF00673 ribosomal L5P family C-terminus NPD12_3628 PF00467 KOW motif NPD12_3628 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NPD12_3629 PF00238 Ribosomal protein L14p/L23e NPD12_363 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_3630 PF00366 Ribosomal protein S17 NPD12_3631 PF00831 Ribosomal L29 protein NPD12_3632 PF00252 Ribosomal protein L16p/L10e NPD12_3633 PF00189 Ribosomal protein S3, C-terminal domain NPD12_3633 PF07650 KH domain NPD12_3634 PF00237 Ribosomal protein L22p/L17e NPD12_3635 PF00203 Ribosomal protein S19 NPD12_3636 PF00181 Ribosomal Proteins L2, RNA binding domain NPD12_3636 PF03947 Ribosomal Proteins L2, C-terminal domain NPD12_3637 PF00276 Ribosomal protein L23 NPD12_3638 PF00573 Ribosomal protein L4/L1 family NPD12_3639 PF00297 Ribosomal protein L3 NPD12_364 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_3640 PF00338 Ribosomal protein S10p/S20e NPD12_3641 PF03144 Elongation factor Tu domain 2 NPD12_3641 PF00009 Elongation factor Tu GTP binding domain NPD12_3641 PF03143 Elongation factor Tu C-terminal domain NPD12_3642 PF03144 Elongation factor Tu domain 2 NPD12_3642 PF00679 Elongation factor G C-terminus NPD12_3642 PF03764 Elongation factor G, domain IV NPD12_3642 PF14492 Elongation Factor G, domain II NPD12_3642 PF00009 Elongation factor Tu GTP binding domain NPD12_3643 PF00177 Ribosomal protein S7p/S5e NPD12_3644 PF00164 Ribosomal protein S12/S23 NPD12_3645 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NPD12_3646 PF04983 RNA polymerase Rpb1, domain 3 NPD12_3646 PF05000 RNA polymerase Rpb1, domain 4 NPD12_3646 PF04997 RNA polymerase Rpb1, domain 1 NPD12_3646 PF00623 RNA polymerase Rpb1, domain 2 NPD12_3646 PF04998 RNA polymerase Rpb1, domain 5 NPD12_3647 PF04560 RNA polymerase Rpb2, domain 7 NPD12_3647 PF10385 RNA polymerase beta subunit external 1 domain NPD12_3647 PF04563 RNA polymerase beta subunit NPD12_3647 PF00562 RNA polymerase Rpb2, domain 6 NPD12_3647 PF04561 RNA polymerase Rpb2, domain 2 NPD12_3647 PF04565 RNA polymerase Rpb2, domain 3 NPD12_3648 PF16320 Ribosomal protein L7/L12 dimerisation domain NPD12_3648 PF00542 Ribosomal protein L7/L12 C-terminal domain NPD12_3649 PF00466 Ribosomal protein L10 NPD12_365 PF08331 Domain of unknown function (DUF1730) NPD12_3650 PF00687 Ribosomal protein L1p/L10e family NPD12_3651 PF00298 Ribosomal protein L11, RNA binding domain NPD12_3651 PF03946 Ribosomal protein L11, N-terminal domain NPD12_3652 PF02357 Transcription termination factor nusG NPD12_3652 PF00467 KOW motif NPD12_3654 PF00471 Ribosomal protein L33 NPD12_3655 PF00009 Elongation factor Tu GTP binding domain NPD12_3655 PF03143 Elongation factor Tu C-terminal domain NPD12_3655 PF03144 Elongation factor Tu domain 2 NPD12_3658 PF08281 Sigma-70, region 4 NPD12_3658 PF04542 Sigma-70 region 2 NPD12_3660 PF08032 RNA 2'-O ribose methyltransferase substrate binding NPD12_3660 PF00588 SpoU rRNA Methylase family NPD12_3661 PF02511 Thymidylate synthase complementing protein NPD12_3662 PF00636 Ribonuclease III domain NPD12_3663 PF01406 tRNA synthetases class I (C) catalytic domain NPD12_3663 PF09190 DALR domain NPD12_3664 PF13291 ACT domain NPD12_3664 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_3665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3665 PF03129 Anticodon binding domain NPD12_3665 PF04073 Aminoacyl-tRNA editing domain NPD12_3666 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NPD12_367 PF10576 Iron-sulfur binding domain of endonuclease III NPD12_367 PF00633 Helix-hairpin-helix motif NPD12_367 PF00730 HhH-GPD superfamily base excision DNA repair protein NPD12_3670 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPD12_3670 PF10635 DisA bacterial checkpoint controller linker region NPD12_3671 PF18073 Rubredoxin metal binding domain NPD12_3672 PF07724 AAA domain (Cdc48 subfamily) NPD12_3672 PF17871 AAA lid domain NPD12_3672 PF02861 Clp amino terminal domain, pathogenicity island component NPD12_3672 PF10431 C-terminal, D2-small domain, of ClpB protein NPD12_3672 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3673 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain NPD12_3674 PF02151 UvrB/uvrC motif NPD12_3675 PF05848 CtsR N-terminal HTH domain NPD12_3675 PF17727 CtsR C-terminal dimerization domain NPD12_3677 PF00679 Elongation factor G C-terminus NPD12_3677 PF14492 Elongation Factor G, domain II NPD12_3677 PF03764 Elongation factor G, domain IV NPD12_3677 PF00009 Elongation factor Tu GTP binding domain NPD12_3677 PF03144 Elongation factor Tu domain 2 NPD12_368 PF00390 Malic enzyme, N-terminal domain NPD12_368 PF03949 Malic enzyme, NAD binding domain NPD12_3689 PF08245 Mur ligase middle domain NPD12_369 PF18146 Damage-inducible protein CinA KH domain NPD12_369 PF02464 Competence-damaged protein NPD12_369 PF00994 Probable molybdopterin binding domain NPD12_3691 PF03129 Anticodon binding domain NPD12_3691 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3692 PF01336 OB-fold nucleic acid binding domain NPD12_3692 PF00152 tRNA synthetases class II (D, K and N) NPD12_3693 PF03449 Transcription elongation factor, N-terminal NPD12_3693 PF01272 Transcription elongation factor, GreA/GreB, C-term NPD12_3695 PF01207 Dihydrouridine synthase (Dus) NPD12_3696 PF03309 Type III pantothenate kinase NPD12_3697 PF01268 Formate--tetrahydrofolate ligase NPD12_3698 PF17862 AAA+ lid domain NPD12_3698 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3698 PF01434 Peptidase family M41 NPD12_37 PF00753 Metallo-beta-lactamase superfamily NPD12_370 PF12146 Serine aminopeptidase, S33 NPD12_3700 PF11734 TilS substrate C-terminal domain NPD12_3700 PF01171 PP-loop family NPD12_3701 PF07228 Stage II sporulation protein E (SpoIIE) NPD12_3709 PF00575 S1 RNA binding domain NPD12_371 PF05343 M42 glutamyl aminopeptidase NPD12_3714 PF02511 Thymidylate synthase complementing protein NPD12_372 PF04294 VanW like protein NPD12_373 PF04294 VanW like protein NPD12_374 PF04055 Radical SAM superfamily NPD12_375 PF00588 SpoU rRNA Methylase family NPD12_3752 PF01555 DNA methylase NPD12_376 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_3764 PF00436 Single-strand binding protein family NPD12_3798 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_381 PF01522 Polysaccharide deacetylase NPD12_3812 PF12116 Stage III sporulation protein D NPD12_382 PF00309 Sigma-54 factor, Activator interacting domain (AID) NPD12_382 PF04552 Sigma-54, DNA binding domain NPD12_382 PF04963 Sigma-54 factor, core binding domain NPD12_3821 PF01076 Plasmid recombination enzyme NPD12_3826 PF01446 Replication protein NPD12_383 PF04198 Putative sugar-binding domain NPD12_384 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NPD12_384 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NPD12_385 PF00162 Phosphoglycerate kinase NPD12_386 PF00121 Triosephosphate isomerase NPD12_387 PF01676 Metalloenzyme superfamily NPD12_387 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NPD12_388 PF00113 Enolase, C-terminal TIM barrel domain NPD12_388 PF03952 Enolase, N-terminal domain NPD12_39 PF07517 SecA DEAD-like domain NPD12_39 PF07516 SecA Wing and Scaffold domain NPD12_39 PF02810 SEC-C motif NPD12_39 PF01043 SecA preprotein cross-linking domain NPD12_390 PF08206 Ribonuclease B OB domain NPD12_390 PF00773 RNB domain NPD12_390 PF00575 S1 RNA binding domain NPD12_390 PF17876 Cold shock domain NPD12_391 PF01975 Survival protein SurE NPD12_392 PF01668 SmpB protein NPD12_395 PF02378 Phosphotransferase system, EIIC NPD12_396 PF02056 Family 4 glycosyl hydrolase NPD12_396 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_397 PF00480 ROK family NPD12_398 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NPD12_399 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_4 PF00216 Bacterial DNA-binding protein NPD12_40 PF02590 Predicted SPOUT methyltransferase NPD12_401 PF02311 AraC-like ligand binding domain NPD12_401 PF12833 Helix-turn-helix domain NPD12_404 PF00669 Bacterial flagellin N-terminal helical region NPD12_404 PF00700 Bacterial flagellin C-terminal helical region NPD12_406 PF00486 Transcriptional regulatory protein, C terminal NPD12_406 PF00072 Response regulator receiver domain NPD12_407 PF00005 ABC transporter NPD12_409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_409 PF00512 His Kinase A (phospho-acceptor) domain NPD12_41 PF07690 Major Facilitator Superfamily NPD12_410 PF07883 Cupin domain NPD12_412 PF00324 Amino acid permease NPD12_417 PF01872 RibD C-terminal domain NPD12_418 PF00929 Exonuclease NPD12_418 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NPD12_418 PF14579 Helix-hairpin-helix motif NPD12_418 PF02811 PHP domain NPD12_418 PF07733 Bacterial DNA polymerase III alpha NTPase domain NPD12_418 PF01336 OB-fold nucleic acid binding domain NPD12_418 PF14480 DNA polymerase III polC-type N-terminus I NPD12_418 PF11490 DNA polymerase III polC-type N-terminus II NPD12_420 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_420 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_421 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_421 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_423 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NPD12_424 PF07451 Stage V sporulation protein AD (SpoVAD) NPD12_425 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NPD12_426 PF04239 Protein of unknown function (DUF421) NPD12_43 PF16859 Tetracyclin repressor-like, C-terminal domain NPD12_43 PF00440 Bacterial regulatory proteins, tetR family NPD12_430 PF02683 Cytochrome C biogenesis protein transmembrane region NPD12_431 PF00578 AhpC/TSA family NPD12_432 PF00486 Transcriptional regulatory protein, C terminal NPD12_432 PF00072 Response regulator receiver domain NPD12_433 PF00512 His Kinase A (phospho-acceptor) domain NPD12_433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_433 PF00672 HAMP domain NPD12_434 PF08031 Berberine and berberine like NPD12_434 PF01565 FAD binding domain NPD12_435 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_435 PF02056 Family 4 glycosyl hydrolase NPD12_436 PF02378 Phosphotransferase system, EIIC NPD12_436 PF00367 phosphotransferase system, EIIB NPD12_437 PF01380 SIS domain NPD12_437 PF01418 Helix-turn-helix domain, rpiR family NPD12_439 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_44 PF12833 Helix-turn-helix domain NPD12_440 PF00486 Transcriptional regulatory protein, C terminal NPD12_440 PF00072 Response regulator receiver domain NPD12_441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_442 PF00005 ABC transporter NPD12_443 PF02687 FtsX-like permease family NPD12_444 PF00367 phosphotransferase system, EIIB NPD12_444 PF02378 Phosphotransferase system, EIIC NPD12_445 PF02056 Family 4 glycosyl hydrolase NPD12_445 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_446 PF00367 phosphotransferase system, EIIB NPD12_446 PF02378 Phosphotransferase system, EIIC NPD12_446 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_448 PF00313 'Cold-shock' DNA-binding domain NPD12_45 PF02810 SEC-C motif NPD12_45 PF00557 Metallopeptidase family M24 NPD12_450 PF02082 Transcriptional regulator NPD12_451 PF01323 DSBA-like thioredoxin domain NPD12_452 PF13460 NAD(P)H-binding NPD12_453 PF01418 Helix-turn-helix domain, rpiR family NPD12_453 PF01380 SIS domain NPD12_454 PF00367 phosphotransferase system, EIIB NPD12_454 PF02378 Phosphotransferase system, EIIC NPD12_455 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_455 PF02056 Family 4 glycosyl hydrolase NPD12_456 PF00367 phosphotransferase system, EIIB NPD12_456 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_456 PF02378 Phosphotransferase system, EIIC NPD12_457 PF00920 Dehydratase family NPD12_459 PF00294 pfkB family carbohydrate kinase NPD12_46 PF00881 Nitroreductase family NPD12_460 PF13382 Adenine deaminase C-terminal domain NPD12_460 PF01979 Amidohydrolase family NPD12_461 PF00072 Response regulator receiver domain NPD12_461 PF00486 Transcriptional regulatory protein, C terminal NPD12_462 PF00672 HAMP domain NPD12_462 PF00512 His Kinase A (phospho-acceptor) domain NPD12_462 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_463 PF00535 Glycosyl transferase family 2 NPD12_464 PF04138 GtrA-like protein NPD12_465 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NPD12_466 PF12833 Helix-turn-helix domain NPD12_466 PF12852 Cupin NPD12_468 PF01032 FecCD transport family NPD12_469 PF00005 ABC transporter NPD12_47 PF11230 Protein of unknown function (DUF3029) NPD12_472 PF01497 Periplasmic binding protein NPD12_473 PF12833 Helix-turn-helix domain NPD12_474 PF01497 Periplasmic binding protein NPD12_475 PF01032 FecCD transport family NPD12_476 PF01032 FecCD transport family NPD12_477 PF00005 ABC transporter NPD12_478 PF00664 ABC transporter transmembrane region NPD12_478 PF00005 ABC transporter NPD12_48 PF04055 Radical SAM superfamily NPD12_480 PF00860 Permease family NPD12_481 PF00156 Phosphoribosyl transferase domain NPD12_482 PF00072 Response regulator receiver domain NPD12_482 PF00486 Transcriptional regulatory protein, C terminal NPD12_483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_485 PF00005 ABC transporter NPD12_486 PF02687 FtsX-like permease family NPD12_488 PF03788 LrgA family NPD12_489 PF04172 LrgB-like family NPD12_492 PF08903 Domain of unknown function (DUF1846) NPD12_495 PF04647 Accessory gene regulator B NPD12_497 PF00990 Diguanylate cyclase, GGDEF domain NPD12_497 PF00360 Phytochrome region NPD12_497 PF00563 EAL domain NPD12_497 PF01590 GAF domain NPD12_5 PF03819 MazG nucleotide pyrophosphohydrolase domain NPD12_5 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_50 PF04055 Radical SAM superfamily NPD12_50 PF06968 Biotin and Thiamin Synthesis associated domain NPD12_500 PF00672 HAMP domain NPD12_500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_500 PF00989 PAS fold NPD12_500 PF18698 Histidine kinase sensor domain NPD12_500 PF00512 His Kinase A (phospho-acceptor) domain NPD12_502 PF04647 Accessory gene regulator B NPD12_504 PF00512 His Kinase A (phospho-acceptor) domain NPD12_504 PF00989 PAS fold NPD12_504 PF00672 HAMP domain NPD12_504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_504 PF18698 Histidine kinase sensor domain NPD12_505 PF01171 PP-loop family NPD12_506 PF01381 Helix-turn-helix NPD12_506 PF06114 IrrE N-terminal-like domain NPD12_506 PF09856 Predicted transcriptional regulator (DUF2083) NPD12_507 PF13520 Amino acid permease NPD12_508 PF01321 Creatinase/Prolidase N-terminal domain NPD12_508 PF00557 Metallopeptidase family M24 NPD12_509 PF00171 Aldehyde dehydrogenase family NPD12_509 PF00465 Iron-containing alcohol dehydrogenase NPD12_514 PF01569 PAP2 superfamily NPD12_515 PF01522 Polysaccharide deacetylase NPD12_515 PF00457 Glycosyl hydrolases family 11 NPD12_515 PF03422 Carbohydrate binding module (family 6) NPD12_516 PF00072 Response regulator receiver domain NPD12_516 PF00486 Transcriptional regulatory protein, C terminal NPD12_517 PF00989 PAS fold NPD12_517 PF16736 Single Cache-like NPD12_517 PF00512 His Kinase A (phospho-acceptor) domain NPD12_517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_519 PF06962 Putative rRNA methylase NPD12_52 PF01926 50S ribosome-binding GTPase NPD12_52 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NPD12_520 PF09335 SNARE associated Golgi protein NPD12_521 PF03707 Bacterial signalling protein N terminal repeat NPD12_521 PF00990 Diguanylate cyclase, GGDEF domain NPD12_521 PF00563 EAL domain NPD12_525 PF03471 Transporter associated domain NPD12_525 PF02080 TrkA-C domain NPD12_525 PF00999 Sodium/hydrogen exchanger family NPD12_526 PF00266 Aminotransferase class-V NPD12_527 PF03601 Conserved hypothetical protein 698 NPD12_529 PF00486 Transcriptional regulatory protein, C terminal NPD12_529 PF00072 Response regulator receiver domain NPD12_530 PF00672 HAMP domain NPD12_530 PF13426 PAS domain NPD12_530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_530 PF00512 His Kinase A (phospho-acceptor) domain NPD12_531 PF00474 Sodium:solute symporter family NPD12_532 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_532 PF13375 RnfC Barrel sandwich hybrid domain NPD12_532 PF13237 4Fe-4S dicluster domain NPD12_532 PF10531 SLBB domain NPD12_533 PF03116 NQR2, RnfD, RnfE family NPD12_534 PF04205 FMN-binding domain NPD12_535 PF02508 Rnf-Nqr subunit, membrane protein NPD12_536 PF02508 Rnf-Nqr subunit, membrane protein NPD12_537 PF13187 4Fe-4S dicluster domain NPD12_537 PF04060 Putative Fe-S cluster NPD12_537 PF00037 4Fe-4S binding domain NPD12_541 PF02424 ApbE family NPD12_549 PF12849 PBP superfamily domain NPD12_55 PF13439 Glycosyltransferase Family 4 NPD12_55 PF00534 Glycosyl transferases group 1 NPD12_550 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_551 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_552 PF00005 ABC transporter NPD12_554 PF13520 Amino acid permease NPD12_558 PF00436 Single-strand binding protein family NPD12_559 PF02659 Putative manganese efflux pump NPD12_56 PF02811 PHP domain NPD12_561 PF01475 Ferric uptake regulator family NPD12_562 PF01966 HD domain NPD12_562 PF11871 Domain of unknown function (DUF3391) NPD12_563 PF01694 Rhomboid family NPD12_564 PF00672 HAMP domain NPD12_564 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_564 PF02743 Cache domain NPD12_565 PF06480 FtsH Extracellular NPD12_565 PF17862 AAA+ lid domain NPD12_565 PF01434 Peptidase family M41 NPD12_565 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_567 PF00075 RNase H NPD12_573 PF02861 Clp amino terminal domain, pathogenicity island component NPD12_573 PF17871 AAA lid domain NPD12_573 PF10431 C-terminal, D2-small domain, of ClpB protein NPD12_573 PF07724 AAA domain (Cdc48 subfamily) NPD12_573 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_574 PF07685 CobB/CobQ-like glutamine amidotransferase domain NPD12_575 PF08353 Domain of unknown function (DUF1727) NPD12_575 PF08245 Mur ligase middle domain NPD12_576 PF01238 Phosphomannose isomerase type I NPD12_578 PF02673 Bacitracin resistance protein BacA NPD12_585 PF12706 Beta-lactamase superfamily domain NPD12_587 PF00682 HMGL-like NPD12_588 PF00330 Aconitase family (aconitate hydratase) NPD12_589 PF00180 Isocitrate/isopropylmalate dehydrogenase NPD12_589 PF18324 Hypothetical protein TT1725 NPD12_59 PF03466 LysR substrate binding domain NPD12_59 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_590 PF00005 ABC transporter NPD12_591 PF03553 Na+/H+ antiporter family NPD12_592 PF04070 Domain of unknown function (DUF378) NPD12_593 PF02261 Aspartate decarboxylase NPD12_594 PF02569 Pantoate-beta-alanine ligase NPD12_595 PF02548 Ketopantoate hydroxymethyltransferase NPD12_596 PF12705 PD-(D/E)XK nuclease superfamily NPD12_6 PF01943 Polysaccharide biosynthesis protein NPD12_6 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_60 PF00082 Subtilase family NPD12_600 PF08361 MAATS-type transcriptional repressor, C-terminal region NPD12_600 PF00440 Bacterial regulatory proteins, tetR family NPD12_601 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPD12_602 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_602 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NPD12_602 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_603 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NPD12_606 PF00580 UvrD/REP helicase N-terminal domain NPD12_606 PF13361 UvrD-like helicase C-terminal domain NPD12_606 PF12705 PD-(D/E)XK nuclease superfamily NPD12_607 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_607 PF02743 Cache domain NPD12_607 PF00672 HAMP domain NPD12_608 PF01546 Peptidase family M20/M25/M40 NPD12_608 PF07687 Peptidase dimerisation domain NPD12_609 PF01734 Patatin-like phospholipase NPD12_61 PF03466 LysR substrate binding domain NPD12_61 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_614 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_615 PF01209 ubiE/COQ5 methyltransferase family NPD12_616 PF00563 EAL domain NPD12_616 PF08668 HDOD domain NPD12_617 PF02581 Thiamine monophosphate synthase NPD12_618 PF02110 Hydroxyethylthiazole kinase family NPD12_619 PF02581 Thiamine monophosphate synthase NPD12_619 PF08543 Phosphomethylpyrimidine kinase NPD12_62 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_620 PF01820 D-ala D-ala ligase N-terminus NPD12_620 PF07478 D-ala D-ala ligase C-terminus NPD12_621 PF13458 Periplasmic binding protein NPD12_622 PF02653 Branched-chain amino acid transport system / permease component NPD12_623 PF02653 Branched-chain amino acid transport system / permease component NPD12_623 PF11862 Domain of unknown function (DUF3382) NPD12_624 PF00005 ABC transporter NPD12_624 PF12399 Branched-chain amino acid ATP-binding cassette transporter NPD12_625 PF00005 ABC transporter NPD12_629 PF00155 Aminotransferase class I and II NPD12_629 PF00392 Bacterial regulatory proteins, gntR family NPD12_63 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NPD12_631 PF04536 TPM domain NPD12_632 PF00293 NUDIX domain NPD12_632 PF13344 Haloacid dehalogenase-like hydrolase NPD12_635 PF01209 ubiE/COQ5 methyltransferase family NPD12_636 PF13443 Cro/C1-type HTH DNA-binding domain NPD12_638 PF00149 Calcineurin-like phosphoesterase NPD12_638 PF12320 Type 5 capsule protein repressor C-terminal domain NPD12_639 PF13175 AAA ATPase domain NPD12_64 PF01039 Carboxyl transferase domain NPD12_64 PF17848 Acetyl-coA carboxylase zinc finger domain NPD12_641 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_641 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPD12_643 PF01022 Bacterial regulatory protein, arsR family NPD12_644 PF00403 Heavy-metal-associated domain NPD12_646 PF00877 NlpC/P60 family NPD12_65 PF02785 Biotin carboxylase C-terminal domain NPD12_65 PF00289 Biotin carboxylase, N-terminal domain NPD12_65 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_650 PF02562 PhoH-like protein NPD12_650 PF13638 PIN domain NPD12_651 PF12708 Pectate lyase superfamily protein NPD12_651 PF09992 Phosphodiester glycosidase NPD12_659 PF00005 ABC transporter NPD12_66 PF07977 FabA-like domain NPD12_662 PF02163 Peptidase family M50 NPD12_664 PF03600 Citrate transporter NPD12_666 PF02390 Putative methyltransferase NPD12_668 PF08534 Redoxin NPD12_67 PF00364 Biotin-requiring enzyme NPD12_671 PF00877 NlpC/P60 family NPD12_672 PF12146 Serine aminopeptidase, S33 NPD12_673 PF00486 Transcriptional regulatory protein, C terminal NPD12_673 PF00072 Response regulator receiver domain NPD12_674 PF11871 Domain of unknown function (DUF3391) NPD12_674 PF01966 HD domain NPD12_675 PF02743 Cache domain NPD12_675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_675 PF00672 HAMP domain NPD12_676 PF00072 Response regulator receiver domain NPD12_677 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_677 PF02403 Seryl-tRNA synthetase N-terminal domain NPD12_678 PF13307 Helicase C-terminal domain NPD12_678 PF06733 DEAD_2 NPD12_678 PF00270 DEAD/DEAH box helicase NPD12_68 PF00109 Beta-ketoacyl synthase, N-terminal domain NPD12_68 PF02801 Beta-ketoacyl synthase, C-terminal domain NPD12_681 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NPD12_681 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NPD12_682 PF06874 Firmicute fructose-1,6-bisphosphatase NPD12_684 PF01814 Hemerythrin HHE cation binding domain NPD12_687 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NPD12_687 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NPD12_689 PF06463 Molybdenum Cofactor Synthesis C NPD12_689 PF04055 Radical SAM superfamily NPD12_694 PF00664 ABC transporter transmembrane region NPD12_694 PF00005 ABC transporter NPD12_695 PF00486 Transcriptional regulatory protein, C terminal NPD12_695 PF00072 Response regulator receiver domain NPD12_695 PF01627 Hpt domain NPD12_696 PF00512 His Kinase A (phospho-acceptor) domain NPD12_696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_697 PF00005 ABC transporter NPD12_7 PF15714 Stage V sporulation protein T C-terminal, transcription factor NPD12_7 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NPD12_70 PF00698 Acyl transferase domain NPD12_700 PF13520 Amino acid permease NPD12_701 PF13404 AsnC-type helix-turn-helix domain NPD12_701 PF01037 Lrp/AsnC ligand binding domain NPD12_703 PF13520 Amino acid permease NPD12_704 PF13520 Amino acid permease NPD12_705 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_706 PF00753 Metallo-beta-lactamase superfamily NPD12_706 PF03772 Competence protein NPD12_707 PF00689 Cation transporting ATPase, C-terminus NPD12_707 PF00690 Cation transporter/ATPase, N-terminus NPD12_708 PF02417 Chromate transporter NPD12_709 PF02417 Chromate transporter NPD12_71 PF03060 Nitronate monooxygenase NPD12_710 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NPD12_712 PF02540 NAD synthase NPD12_712 PF00795 Carbon-nitrogen hydrolase NPD12_714 PF01145 SPFH domain / Band 7 family NPD12_715 PF00557 Metallopeptidase family M24 NPD12_715 PF05195 Aminopeptidase P, N-terminal domain NPD12_72 PF00550 Phosphopantetheine attachment site NPD12_720 PF12146 Serine aminopeptidase, S33 NPD12_722 PF13722 5TM C-terminal transporter carbon starvation CstA NPD12_722 PF02554 Carbon starvation protein CstA NPD12_724 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_724 PF00672 HAMP domain NPD12_724 PF02743 Cache domain NPD12_725 PF00005 ABC transporter NPD12_725 PF12848 ABC transporter NPD12_725 PF16326 ABC transporter C-terminal domain NPD12_726 PF01741 Large-conductance mechanosensitive channel, MscL NPD12_728 PF02810 SEC-C motif NPD12_728 PF07517 SecA DEAD-like domain NPD12_728 PF07516 SecA Wing and Scaffold domain NPD12_728 PF01043 SecA preprotein cross-linking domain NPD12_73 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPD12_73 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_730 PF00392 Bacterial regulatory proteins, gntR family NPD12_731 PF00005 ABC transporter NPD12_734 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_734 PF02743 Cache domain NPD12_734 PF00672 HAMP domain NPD12_736 PF00005 ABC transporter NPD12_736 PF08402 TOBE domain NPD12_737 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_738 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_740 PF00375 Sodium:dicarboxylate symporter family NPD12_744 PF01471 Putative peptidoglycan binding domain NPD12_744 PF08924 Domain of unknown function (DUF1906) NPD12_745 PF12645 Helix-turn-helix domain NPD12_745 PF04545 Sigma-70, region 4 NPD12_746 PF10960 BhlA holin family NPD12_749 PF00805 Pentapeptide repeats (8 copies) NPD12_750 PF09334 tRNA synthetases class I (M) NPD12_750 PF08264 Anticodon-binding domain of tRNA NPD12_750 PF01588 Putative tRNA binding domain NPD12_751 PF01381 Helix-turn-helix NPD12_753 PF10502 Signal peptidase, peptidase S26 NPD12_754 PF00072 Response regulator receiver domain NPD12_754 PF04397 LytTr DNA-binding domain NPD12_76 PF01476 LysM domain NPD12_76 PF08525 Opacity-associated protein A N-terminal motif NPD12_76 PF01551 Peptidase family M23 NPD12_762 PF00664 ABC transporter transmembrane region NPD12_762 PF00005 ABC transporter NPD12_766 PF00005 ABC transporter NPD12_770 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_771 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_772 PF00884 Sulfatase NPD12_773 PF00158 Sigma-54 interaction domain NPD12_773 PF13426 PAS domain NPD12_773 PF02954 Bacterial regulatory protein, Fis family NPD12_774 PF01773 Na+ dependent nucleoside transporter N-terminus NPD12_774 PF07662 Na+ dependent nucleoside transporter C-terminus NPD12_774 PF07670 Nucleoside recognition NPD12_775 PF00152 tRNA synthetases class II (D, K and N) NPD12_775 PF01336 OB-fold nucleic acid binding domain NPD12_78 PF01695 IstB-like ATP binding protein NPD12_780 PF06445 GyrI-like small molecule binding domain NPD12_780 PF12833 Helix-turn-helix domain NPD12_784 PF00486 Transcriptional regulatory protein, C terminal NPD12_784 PF00072 Response regulator receiver domain NPD12_785 PF02702 Osmosensitive K+ channel His kinase sensor domain NPD12_785 PF13493 Domain of unknown function (DUF4118) NPD12_785 PF00512 His Kinase A (phospho-acceptor) domain NPD12_785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_786 PF02557 D-alanyl-D-alanine carboxypeptidase NPD12_787 PF00072 Response regulator receiver domain NPD12_787 PF00486 Transcriptional regulatory protein, C terminal NPD12_788 PF00989 PAS fold NPD12_788 PF00672 HAMP domain NPD12_788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_788 PF18698 Histidine kinase sensor domain NPD12_788 PF00512 His Kinase A (phospho-acceptor) domain NPD12_790 PF00072 Response regulator receiver domain NPD12_790 PF08664 YcbB domain NPD12_791 PF00672 HAMP domain NPD12_791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_791 PF00512 His Kinase A (phospho-acceptor) domain NPD12_791 PF18698 Histidine kinase sensor domain NPD12_791 PF00989 PAS fold NPD12_792 PF01098 Cell cycle protein NPD12_795 PF00005 ABC transporter NPD12_795 PF00664 ABC transporter transmembrane region NPD12_796 PF00302 Chloramphenicol acetyltransferase NPD12_797 PF00440 Bacterial regulatory proteins, tetR family NPD12_797 PF08360 QacR-like protein, C-terminal region NPD12_799 PF01588 Putative tRNA binding domain NPD12_8 PF13145 PPIC-type PPIASE domain NPD12_800 PF06719 AraC-type transcriptional regulator N-terminus NPD12_800 PF12833 Helix-turn-helix domain NPD12_801 PF01381 Helix-turn-helix NPD12_803 PF00072 Response regulator receiver domain NPD12_803 PF04397 LytTr DNA-binding domain NPD12_804 PF00005 ABC transporter NPD12_806 PF01546 Peptidase family M20/M25/M40 NPD12_806 PF07687 Peptidase dimerisation domain NPD12_807 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_808 PF01713 Smr domain NPD12_808 PF00488 MutS domain V NPD12_814 PF00392 Bacterial regulatory proteins, gntR family NPD12_814 PF00155 Aminotransferase class I and II NPD12_816 PF00271 Helicase conserved C-terminal domain NPD12_816 PF00270 DEAD/DEAH box helicase NPD12_821 PF03466 LysR substrate binding domain NPD12_821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_825 PF02698 DUF218 domain NPD12_826 PF00271 Helicase conserved C-terminal domain NPD12_826 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NPD12_826 PF04851 Type III restriction enzyme, res subunit NPD12_826 PF08463 EcoEI R protein C-terminal NPD12_827 PF00293 NUDIX domain NPD12_830 PF00962 Adenosine/AMP deaminase NPD12_832 PF03123 CAT RNA binding domain NPD12_832 PF00874 PRD domain NPD12_833 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_833 PF00367 phosphotransferase system, EIIB NPD12_833 PF02378 Phosphotransferase system, EIIC NPD12_834 PF02811 PHP domain NPD12_835 PF13545 Crp-like helix-turn-helix domain NPD12_835 PF00027 Cyclic nucleotide-binding domain NPD12_836 PF00258 Flavodoxin NPD12_836 PF00301 Rubredoxin NPD12_836 PF00753 Metallo-beta-lactamase superfamily NPD12_837 PF01814 Hemerythrin HHE cation binding domain NPD12_837 PF04405 Domain of Unknown function (DUF542) NPD12_844 PF02653 Branched-chain amino acid transport system / permease component NPD12_845 PF00005 ABC transporter NPD12_848 PF05569 BlaR1 peptidase M56 NPD12_848 PF00905 Penicillin binding protein transpeptidase domain NPD12_853 PF01207 Dihydrouridine synthase (Dus) NPD12_854 PF01272 Transcription elongation factor, GreA/GreB, C-term NPD12_854 PF03449 Transcription elongation factor, N-terminal NPD12_856 PF02384 N-6 DNA Methylase NPD12_856 PF12161 HsdM N-terminal domain NPD12_859 PF00271 Helicase conserved C-terminal domain NPD12_859 PF08463 EcoEI R protein C-terminal NPD12_859 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NPD12_859 PF04851 Type III restriction enzyme, res subunit NPD12_863 PF01032 FecCD transport family NPD12_864 PF01032 FecCD transport family NPD12_865 PF00005 ABC transporter NPD12_866 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NPD12_867 PF00148 Nitrogenase component 1 type Oxidoreductase NPD12_867 PF04324 BFD-like [2Fe-2S] binding domain NPD12_869 PF00672 HAMP domain NPD12_869 PF02743 Cache domain NPD12_869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_871 PF01571 Aminomethyltransferase folate-binding domain NPD12_871 PF08669 Glycine cleavage T-protein C-terminal barrel domain NPD12_872 PF01597 Glycine cleavage H-protein NPD12_873 PF02347 Glycine cleavage system P-protein NPD12_874 PF02347 Glycine cleavage system P-protein NPD12_875 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_876 PF10437 Bacterial lipoate protein ligase C-terminus NPD12_876 PF03099 Biotin/lipoate A/B protein ligase family NPD12_880 PF00872 Transposase, Mutator family NPD12_881 PF00486 Transcriptional regulatory protein, C terminal NPD12_881 PF00072 Response regulator receiver domain NPD12_882 PF16736 Single Cache-like NPD12_882 PF00989 PAS fold NPD12_882 PF00512 His Kinase A (phospho-acceptor) domain NPD12_882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_883 PF02687 FtsX-like permease family NPD12_883 PF12704 MacB-like periplasmic core domain NPD12_883 PF00005 ABC transporter NPD12_885 PF01047 MarR family NPD12_887 PF12833 Helix-turn-helix domain NPD12_890 PF06414 Zeta toxin NPD12_891 PF01381 Helix-turn-helix NPD12_894 PF13411 MerR HTH family regulatory protein NPD12_895 PF00005 ABC transporter NPD12_898 PF00005 ABC transporter NPD12_898 PF17755 UvrA DNA-binding domain NPD12_898 PF17760 UvrA interaction domain NPD12_899 PF17760 UvrA interaction domain NPD12_899 PF17755 UvrA DNA-binding domain NPD12_9 PF17757 UvrB interaction domain NPD12_9 PF02559 CarD-like/TRCF domain NPD12_9 PF00271 Helicase conserved C-terminal domain NPD12_9 PF00270 DEAD/DEAH box helicase NPD12_9 PF03461 TRCF domain NPD12_90 PF03618 Kinase/pyrophosphorylase NPD12_900 PF13538 UvrD-like helicase C-terminal domain NPD12_903 PF06445 GyrI-like small molecule binding domain NPD12_903 PF12833 Helix-turn-helix domain NPD12_904 PF00892 EamA-like transporter family NPD12_906 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_906 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPD12_907 PF00672 HAMP domain NPD12_907 PF02743 Cache domain NPD12_907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_909 PF00005 ABC transporter NPD12_909 PF12848 ABC transporter NPD12_912 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_914 PF01053 Cys/Met metabolism PLP-dependent enzyme NPD12_915 PF01209 ubiE/COQ5 methyltransferase family NPD12_916 PF00704 Glycosyl hydrolases family 18 NPD12_916 PF06483 Chitinase C NPD12_917 PF08241 Methyltransferase domain NPD12_918 PF12833 Helix-turn-helix domain NPD12_918 PF06445 GyrI-like small molecule binding domain NPD12_923 PF01381 Helix-turn-helix NPD12_937 PF01022 Bacterial regulatory protein, arsR family NPD12_938 PF06953 Arsenical resistance operon trans-acting repressor ArsD NPD12_939 PF02374 Anion-transporting ATPase NPD12_940 PF01758 Sodium Bile acid symporter family NPD12_942 PF13847 Methyltransferase domain NPD12_948 PF01742 Clostridial neurotoxin zinc protease NPD12_948 PF07953 Clostridium neurotoxin, N-terminal receptor binding NPD12_948 PF08470 Nontoxic nonhaemagglutinin C-terminal NPD12_949 PF01742 Clostridial neurotoxin zinc protease NPD12_949 PF07951 Clostridium neurotoxin, C-terminal receptor binding NPD12_949 PF07953 Clostridium neurotoxin, N-terminal receptor binding NPD12_949 PF07952 Clostridium neurotoxin, Translocation domain NPD12_95 PF00709 Adenylosuccinate synthetase NPD12_950 PF08239 Bacterial SH3 domain NPD12_950 PF01183 Glycosyl hydrolases family 25 NPD12_955 PF01547 Bacterial extracellular solute-binding protein NPD12_956 PF08543 Phosphomethylpyrimidine kinase NPD12_956 PF02581 Thiamine monophosphate synthase NPD12_959 PF00005 ABC transporter NPD12_961 PF00486 Transcriptional regulatory protein, C terminal NPD12_961 PF00072 Response regulator receiver domain NPD12_962 PF00005 ABC transporter NPD12_964 PF12833 Helix-turn-helix domain NPD12_964 PF06445 GyrI-like small molecule binding domain NPD12_965 PF00512 His Kinase A (phospho-acceptor) domain NPD12_965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_968 PF00005 ABC transporter NPD12_971 PF00486 Transcriptional regulatory protein, C terminal NPD12_971 PF00072 Response regulator receiver domain NPD12_972 PF00672 HAMP domain NPD12_972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_972 PF00512 His Kinase A (phospho-acceptor) domain NPD12_974 PF01497 Periplasmic binding protein NPD12_975 PF01032 FecCD transport family NPD12_976 PF01032 FecCD transport family NPD12_977 PF00005 ABC transporter NPD12_978 PF08141 Small acid-soluble spore protein H family NPD12_98 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPD12_98 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPD12_98 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPD12_98 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPD12_980 PF05173 Dihydrodipicolinate reductase, C-terminus NPD12_980 PF01113 Dihydrodipicolinate reductase, N-terminus NPD12_981 PF00581 Rhodanese-like domain NPD12_988 PF01527 Transposase NPD12_989 PF03505 Clostridium enterotoxin NPD12_99 PF03796 DnaB-like helicase C terminal domain NPD12_99 PF00772 DnaB-like helicase N terminal domain NPD12_993 PF08470 Nontoxic nonhaemagglutinin C-terminal NPD12_993 PF01742 Clostridial neurotoxin zinc protease NPD12_993 PF07953 Clostridium neurotoxin, N-terminal receptor binding NPD12_999 PF01979 Amidohydrolase family