NPD12_1 PF09578 NPD12_1 NPD12_10 PF01195 Peptidyl-tRNA hydrolase NPD12_100 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_100 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_1000 PF05525 NPD12_1000 NPD12_1001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1001 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1002 PF04023 FeoA domain NPD12_1003 PF02421 Ferrous iron transport protein B NPD12_1004 PF07664 NPD12_1004 NPD12_1004 PF07670 Nucleoside recognition NPD12_1005 PF00300 Histidine phosphatase superfamily (branch 1) NPD12_1006 PF04294 NPD12_1006 NPD12_1006 PF07501 G5 domain NPD12_1006 PF12229 Putative peptidoglycan binding domain NPD12_1007 PF02654 NPD12_1007 NPD12_1009 PF14898 NPD12_1009 NPD12_101 PF01281 Ribosomal protein L9, N-terminal domain NPD12_101 PF03948 Ribosomal protein L9, C-terminal domain NPD12_1011 PF07875 NPD12_1011 NPD12_1012 PF07833 Copper amine oxidase N-terminal domain NPD12_1012 PF10096 NPD12_1012 NPD12_1013 PF01242 6-pyruvoyl tetrahydropterin synthase NPD12_1014 PF00809 Pterin binding enzyme NPD12_1015 PF13684 Dihydroxyacetone kinase family NPD12_1016 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NPD12_1017 PF00011 Hsp20/alpha crystallin family NPD12_1018 PF08241 Methyltransferase domain NPD12_1018 PF13411 MerR HTH family regulatory protein NPD12_1019 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_102 PF01368 DHH family NPD12_102 PF02272 DHHA1 domain NPD12_1020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_1022 PF04542 Sigma-70 region 2 NPD12_1022 PF08281 Sigma-70, region 4 NPD12_1023 PF13786 Domain of unknown function (DUF4179) NPD12_1024 PF01613 Flavin reductase like domain NPD12_1025 PF12900 Pyridoxamine 5'-phosphate oxidase NPD12_1026 PF12679 NPD12_1026 NPD12_1027 PF00005 ABC transporter NPD12_1028 PF01381 Helix-turn-helix NPD12_103 PF09991 NPD12_103 NPD12_1031 PF00561 alpha/beta hydrolase fold NPD12_1032 PF13302 Acetyltransferase (GNAT) domain NPD12_1033 PF13599 Pentapeptide repeats (9 copies) NPD12_1034 PF00583 Acetyltransferase (GNAT) family NPD12_1036 PF04229 GrpB protein NPD12_1037 PF13673 Acetyltransferase (GNAT) domain NPD12_1038 PF13396 NPD12_1038 NPD12_1039 PF02678 Pirin NPD12_104 PF12643 NPD12_104 NPD12_1040 PF01638 HxlR-like helix-turn-helix NPD12_1041 PF00881 Nitroreductase family NPD12_1043 PF00190 Cupin NPD12_1044 PF03641 Possible lysine decarboxylase NPD12_1045 PF04657 NPD12_1045 NPD12_1046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1046 PF03466 LysR substrate binding domain NPD12_1047 PF13673 Acetyltransferase (GNAT) domain NPD12_1049 PF08279 HTH domain NPD12_1049 PF13280 NPD12_1049 NPD12_105 PF01084 Ribosomal protein S18 NPD12_1050 PF12821 NPD12_1050 NPD12_1051 PF06738 NPD12_1051 NPD12_1053 PF01327 Polypeptide deformylase NPD12_1054 PF00155 Aminotransferase class I and II NPD12_1054 PF00392 Bacterial regulatory proteins, gntR family NPD12_1055 PF12833 Helix-turn-helix domain NPD12_1056 PF00881 Nitroreductase family NPD12_106 PF00436 Single-strand binding protein family NPD12_1060 PF00874 PRD domain NPD12_1060 PF03123 CAT RNA binding domain NPD12_1061 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_1061 PF00367 phosphotransferase system, EIIB NPD12_1061 PF02378 Phosphotransferase system, EIIC NPD12_1062 PF00232 Glycosyl hydrolase family 1 NPD12_1064 PF00953 Glycosyl transferase family 4 NPD12_1065 PF01381 Helix-turn-helix NPD12_1066 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_1068 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase NPD12_1069 PF06445 GyrI-like small molecule binding domain NPD12_1069 PF12833 Helix-turn-helix domain NPD12_107 PF01250 Ribosomal protein S6 NPD12_1070 PF04371 Porphyromonas-type peptidyl-arginine deiminase NPD12_1072 PF03358 NADPH-dependent FMN reductase NPD12_1076 PF09557 NPD12_1076 NPD12_1077 PF09557 NPD12_1077 NPD12_1078 PF04229 GrpB protein NPD12_1079 PF03734 L,D-transpeptidase catalytic domain NPD12_108 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_1081 PF12788 NPD12_1081 NPD12_1082 PF13302 Acetyltransferase (GNAT) domain NPD12_1086 PF00005 ABC transporter NPD12_1086 PF02687 NPD12_1086 NPD12_1087 PF00072 Response regulator receiver domain NPD12_1087 PF00486 Transcriptional regulatory protein, C terminal NPD12_1088 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1088 PF00672 HAMP domain NPD12_1088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1089 PF01063 Aminotransferase class IV NPD12_109 PF06107 NPD12_109 NPD12_1090 PF02632 BioY family NPD12_1091 PF04199 Putative cyclase NPD12_1093 PF00583 Acetyltransferase (GNAT) family NPD12_1094 PF00580 UvrD/REP helicase N-terminal domain NPD12_1094 PF00717 Peptidase S24-like NPD12_1095 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NPD12_1097 PF07739 TipAS antibiotic-recognition domain NPD12_1097 PF13411 MerR HTH family regulatory protein NPD12_1098 PF07685 CobB/CobQ-like glutamine amidotransferase domain NPD12_1098 PF13500 AAA domain NPD12_1099 PF03186 NPD12_1099 NPD12_11 PF13180 PDZ domain NPD12_11 PF13365 Trypsin-like peptidase domain NPD12_110 PF00924 Mechanosensitive ion channel NPD12_1100 PF00155 Aminotransferase class I and II NPD12_1101 PF01891 Cobalt uptake substrate-specific transmembrane region NPD12_1102 PF02553 NPD12_1102 NPD12_1103 PF02361 Cobalt transport protein NPD12_1104 PF13241 Putative NAD(P)-binding NPD12_1105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NPD12_1105 PF03900 Porphobilinogen deaminase, C-terminal domain NPD12_1106 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1106 PF02602 Uroporphyrinogen-III synthase HemD NPD12_1108 PF00490 Delta-aminolevulinic acid dehydratase NPD12_1109 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPD12_1109 PF07685 CobB/CobQ-like glutamine amidotransferase domain NPD12_111 PF11823 NPD12_111 NPD12_1110 PF02570 Precorrin-8X methylmutase NPD12_1111 PF08668 HDOD domain NPD12_1113 PF13304 AAA domain NPD12_1113 PF13476 AAA domain NPD12_1115 PF00583 Acetyltransferase (GNAT) family NPD12_1117 PF02661 Fic/DOC family NPD12_1118 PF00881 Nitroreductase family NPD12_112 PF00266 Aminotransferase class-V NPD12_1120 PF04229 GrpB protein NPD12_1121 PF01888 CbiD NPD12_1123 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1125 PF13847 Methyltransferase domain NPD12_113 PF01594 NPD12_113 NPD12_1130 PF00583 Acetyltransferase (GNAT) family NPD12_1131 PF15592 NPD12_1131 NPD12_1132 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1133 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1134 PF01890 Cobalamin synthesis G C-terminus NPD12_1134 PF11760 Cobalamin synthesis G N-terminal NPD12_1134 PF11761 NPD12_1134 NPD12_1135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_1136 PF02571 NPD12_1136 NPD12_1137 PF12822 Protein of unknown function (DUF3816) NPD12_1138 PF06180 Cobalt chelatase (CbiK) NPD12_1139 PF00288 GHMP kinases N terminal domain NPD12_114 PF06866 NPD12_114 NPD12_1140 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NPD12_1141 PF00027 Cyclic nucleotide-binding domain NPD12_1141 PF13545 Crp-like helix-turn-helix domain NPD12_1142 PF01226 Formate/nitrite transporter NPD12_1143 PF17179 NPD12_1143 NPD12_1144 PF00175 Oxidoreductase NAD-binding domain NPD12_1144 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_1145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPD12_1145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPD12_1145 PF13187 4Fe-4S dicluster domain NPD12_1146 PF00994 Probable molybdopterin binding domain NPD12_1149 PF00005 ABC transporter NPD12_115 PF03698 NPD12_115 NPD12_1151 PF00072 Response regulator receiver domain NPD12_1151 PF00486 Transcriptional regulatory protein, C terminal NPD12_1152 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1153 PF00005 ABC transporter NPD12_1154 PF01032 FecCD transport family NPD12_1155 PF01497 Periplasmic binding protein NPD12_1156 PF13419 Haloacid dehalogenase-like hydrolase NPD12_1157 PF04657 NPD12_1157 NPD12_1158 PF04657 NPD12_1158 NPD12_1159 PF00027 Cyclic nucleotide-binding domain NPD12_1159 PF13545 Crp-like helix-turn-helix domain NPD12_116 PF14584 NPD12_116 NPD12_1160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1160 PF03466 LysR substrate binding domain NPD12_1161 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_1162 PF12900 Pyridoxamine 5'-phosphate oxidase NPD12_1164 PF02733 Dak1 domain NPD12_1164 PF02734 DAK2 domain NPD12_1165 PF00465 Iron-containing alcohol dehydrogenase NPD12_1166 PF10114 NPD12_1166 NPD12_1166 PF12833 Helix-turn-helix domain NPD12_1167 PF13673 Acetyltransferase (GNAT) domain NPD12_1168 PF13508 Acetyltransferase (GNAT) domain NPD12_1169 PF07081 Protein of unknown function (DUF1349) NPD12_117 PF02195 ParB-like nuclease domain NPD12_1170 PF00248 Aldo/keto reductase family NPD12_1171 PF04993 TfoX N-terminal domain NPD12_1172 PF00583 Acetyltransferase (GNAT) family NPD12_1172 PF13673 Acetyltransferase (GNAT) domain NPD12_1174 PF01252 NPD12_1174 NPD12_1176 PF04892 NPD12_1176 NPD12_1177 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1178 PF00072 Response regulator receiver domain NPD12_1178 PF00486 Transcriptional regulatory protein, C terminal NPD12_1179 PF02557 D-alanyl-D-alanine carboxypeptidase NPD12_118 PF13614 AAA domain NPD12_1180 PF00962 Adenosine/AMP deaminase NPD12_1182 PF12698 ABC-2 family transporter protein NPD12_1184 PF13803 NPD12_1184 NPD12_1185 PF00270 DEAD/DEAH box helicase NPD12_1185 PF00271 Helicase conserved C-terminal domain NPD12_1185 PF00570 HRDC domain NPD12_1185 PF09382 RQC domain NPD12_1185 PF14493 NPD12_1185 NPD12_1185 PF16124 NPD12_1185 NPD12_1186 PF02915 Rubrerythrin NPD12_1187 PF12850 Calcineurin-like phosphoesterase superfamily domain NPD12_1188 PF00072 Response regulator receiver domain NPD12_1189 PF11738 Protein of unknown function (DUF3298) NPD12_1189 PF14903 NPD12_1189 NPD12_119 PF02195 ParB-like nuclease domain NPD12_1190 PF11211 NPD12_1190 NPD12_1191 PF12836 Helix-hairpin-helix motif NPD12_1192 PF04055 Radical SAM superfamily NPD12_1192 PF13353 4Fe-4S single cluster domain NPD12_1193 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_1195 PF02652 NPD12_1195 NPD12_1196 PF09861 Domain of unknown function (DUF2088) NPD12_1197 PF01012 Electron transfer flavoprotein domain NPD12_1198 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_1198 PF01012 Electron transfer flavoprotein domain NPD12_1199 PF01565 FAD binding domain NPD12_1199 PF02913 FAD linked oxidases, C-terminal domain NPD12_12 PF00512 His Kinase A (phospho-acceptor) domain NPD12_12 PF00672 HAMP domain NPD12_12 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_120 PF02527 rRNA small subunit methyltransferase G NPD12_1202 PF01047 MarR family NPD12_1203 PF04199 Putative cyclase NPD12_1204 PF00155 Aminotransferase class I and II NPD12_1205 PF04199 Putative cyclase NPD12_1206 PF01047 MarR family NPD12_1207 PF06445 GyrI-like small molecule binding domain NPD12_1207 PF13411 MerR HTH family regulatory protein NPD12_1208 PF03483 B3/4 domain NPD12_1209 PF00152 tRNA synthetases class II (D, K and N) NPD12_1209 PF01336 OB-fold nucleic acid binding domain NPD12_121 PF01134 Glucose inhibited division protein A NPD12_121 PF13932 GidA associated domain 3 NPD12_1210 PF06695 NPD12_1210 NPD12_1211 PF12724 Flavodoxin domain NPD12_1212 PF01066 CDP-alcohol phosphatidyltransferase NPD12_1213 PF00440 Bacterial regulatory proteins, tetR family NPD12_1213 PF13305 WHG domain NPD12_1214 PF12724 Flavodoxin domain NPD12_1215 PF13419 Haloacid dehalogenase-like hydrolase NPD12_1216 PF00027 Cyclic nucleotide-binding domain NPD12_1216 PF13545 Crp-like helix-turn-helix domain NPD12_1217 PF01965 DJ-1/PfpI family NPD12_1218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1218 PF03466 LysR substrate binding domain NPD12_1219 PF14268 NPD12_1219 NPD12_122 PF01926 50S ribosome-binding GTPase NPD12_122 PF10396 GTP-binding protein TrmE N-terminus NPD12_122 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE NPD12_1220 PF04023 FeoA domain NPD12_1221 PF04023 FeoA domain NPD12_1222 PF02421 Ferrous iron transport protein B NPD12_1222 PF07664 NPD12_1222 NPD12_1222 PF07670 Nucleoside recognition NPD12_1223 PF12669 NPD12_1223 NPD12_1224 PF13673 Acetyltransferase (GNAT) domain NPD12_1225 PF02557 D-alanyl-D-alanine carboxypeptidase NPD12_1227 PF00072 Response regulator receiver domain NPD12_1227 PF00486 Transcriptional regulatory protein, C terminal NPD12_1228 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_123 PF01424 R3H domain NPD12_123 PF13083 KH domain NPD12_123 PF14804 Jag N-terminus NPD12_1230 PF00067 Cytochrome P450 NPD12_1231 PF00403 Heavy-metal-associated domain NPD12_1231 PF13386 NPD12_1231 NPD12_1232 PF09851 NPD12_1232 NPD12_1233 PF00072 Response regulator receiver domain NPD12_1233 PF00486 Transcriptional regulatory protein, C terminal NPD12_1234 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1235 PF08713 DNA alkylation repair enzyme NPD12_1236 PF12833 Helix-turn-helix domain NPD12_1237 PF01032 FecCD transport family NPD12_1238 PF01032 FecCD transport family NPD12_1239 PF00005 ABC transporter NPD12_124 PF02096 60Kd inner membrane protein NPD12_1240 PF01497 Periplasmic binding protein NPD12_1241 PF12833 Helix-turn-helix domain NPD12_1242 PF00005 ABC transporter NPD12_1242 PF00664 ABC transporter transmembrane region NPD12_1243 PF00005 ABC transporter NPD12_1243 PF00664 ABC transporter transmembrane region NPD12_1244 PF14501 GHKL domain NPD12_1245 PF00072 Response regulator receiver domain NPD12_1245 PF04397 LytTr DNA-binding domain NPD12_1249 PF01345 NPD12_1249 NPD12_1249 PF17210 NPD12_1249 NPD12_125 PF01809 NPD12_125 NPD12_1250 PF00704 Glycosyl hydrolases family 18 NPD12_1251 PF03190 Protein of unknown function, DUF255 NPD12_1252 PF06081 NPD12_1252 NPD12_1252 PF11728 DUF939 C-terminal domain NPD12_1254 PF02517 CAAX protease self-immunity NPD12_1255 PF00753 Metallo-beta-lactamase superfamily NPD12_1256 PF04389 Peptidase family M28 NPD12_1257 PF08239 Bacterial SH3 domain NPD12_1258 PF00005 ABC transporter NPD12_1258 PF12848 ABC transporter NPD12_1258 PF16326 NPD12_1258 NPD12_126 PF00825 Ribonuclease P NPD12_1260 PF03960 ArsC family NPD12_1261 PF04055 Radical SAM superfamily NPD12_1261 PF13186 Iron-sulfur cluster-binding domain NPD12_1262 PF01266 FAD dependent oxidoreductase NPD12_1262 PF04324 BFD-like [2Fe-2S] binding domain NPD12_1263 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1264 PF07892 Protein of unknown function (DUF1667) NPD12_1265 PF07690 Major Facilitator Superfamily NPD12_1266 PF00750 tRNA synthetases class I (R) NPD12_1266 PF03485 Arginyl tRNA synthetase N terminal domain NPD12_1266 PF05746 DALR anticodon binding domain NPD12_1268 PF00155 Aminotransferase class I and II NPD12_1269 PF00571 CBS domain NPD12_127 PF00468 Ribosomal protein L34 NPD12_1270 PF12669 NPD12_1270 NPD12_1271 PF02421 Ferrous iron transport protein B NPD12_1271 PF07664 NPD12_1271 NPD12_1271 PF07670 Nucleoside recognition NPD12_1272 PF04023 FeoA domain NPD12_1273 PF07238 PilZ domain NPD12_1274 PF12710 haloacid dehalogenase-like hydrolase NPD12_1275 PF00704 Glycosyl hydrolases family 18 NPD12_1277 PF00583 Acetyltransferase (GNAT) family NPD12_1278 PF00005 ABC transporter NPD12_1278 PF09383 NIL domain NPD12_1279 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_128 PF00308 Bacterial dnaA protein NPD12_128 PF08299 Bacterial dnaA protein helix-turn-helix NPD12_128 PF11638 DnaA N-terminal domain NPD12_1280 PF03180 NLPA lipoprotein NPD12_1282 PF03180 NLPA lipoprotein NPD12_1283 PF01546 Peptidase family M20/M25/M40 NPD12_1283 PF07687 Peptidase dimerisation domain NPD12_1284 PF13482 RNase_H superfamily NPD12_1285 PF00392 Bacterial regulatory proteins, gntR family NPD12_1285 PF07729 FCD domain NPD12_1286 PF02588 NPD12_1286 NPD12_1286 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_1288 PF00749 tRNA synthetases class I (E and Q), catalytic domain NPD12_1289 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NPD12_1289 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NPD12_129 PF00712 DNA polymerase III beta subunit, N-terminal domain NPD12_129 PF02767 DNA polymerase III beta subunit, central domain NPD12_129 PF02768 DNA polymerase III beta subunit, C-terminal domain NPD12_1290 PF00753 Metallo-beta-lactamase superfamily NPD12_1290 PF07521 RNA-metabolising metallo-beta-lactamase NPD12_1290 PF10996 Beta-Casp domain NPD12_1292 PF01966 HD domain NPD12_1293 PF00171 Aldehyde dehydrogenase family NPD12_1294 PF01235 NPD12_1294 NPD12_1295 PF01235 NPD12_1295 NPD12_1296 PF01047 MarR family NPD12_1297 PF01554 MatE NPD12_1298 PF13181 Tetratricopeptide repeat NPD12_1299 PF11185 NPD12_1299 NPD12_13 PF00072 Response regulator receiver domain NPD12_13 PF00486 Transcriptional regulatory protein, C terminal NPD12_130 PF13275 S4 domain NPD12_1300 PF13416 Bacterial extracellular solute-binding protein NPD12_1301 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1302 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1303 PF00005 ABC transporter NPD12_1304 PF09924 Uncharacterized conserved protein (DUF2156) NPD12_1305 PF13302 Acetyltransferase (GNAT) domain NPD12_1306 PF00085 Thioredoxin NPD12_1307 PF03956 NPD12_1307 NPD12_1308 PF03956 NPD12_1308 NPD12_1309 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_1309 PF12464 Maltose acetyltransferase NPD12_131 PF02463 RecF/RecN/SMC N terminal domain NPD12_1310 PF02237 Biotin protein ligase C terminal domain NPD12_1310 PF03099 Biotin/lipoate A/B protein ligase family NPD12_1310 PF08279 HTH domain NPD12_1311 PF00403 Heavy-metal-associated domain NPD12_1312 PF00571 CBS domain NPD12_1313 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1317 PF00571 CBS domain NPD12_1317 PF01769 Divalent cation transporter NPD12_1317 PF03448 MgtE intracellular N domain NPD12_1318 PF00266 Aminotransferase class-V NPD12_1319 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_1319 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_132 PF04025 NPD12_132 NPD12_1320 PF06245 NPD12_1320 NPD12_1321 PF00258 Flavodoxin NPD12_1321 PF00753 Metallo-beta-lactamase superfamily NPD12_1322 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_1322 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_1322 PF09989 NPD12_1322 NPD12_1323 PF02028 BCCT family transporter NPD12_1324 PF00392 Bacterial regulatory proteins, gntR family NPD12_1324 PF02080 TrkA-C domain NPD12_1325 PF01613 Flavin reductase like domain NPD12_1326 PF00857 Isochorismatase family NPD12_1327 PF00581 Rhodanese-like domain NPD12_1329 PF14056 NPD12_1329 NPD12_133 PF00204 DNA gyrase B NPD12_133 PF00986 DNA gyrase B subunit, carboxyl terminus NPD12_133 PF01751 Toprim domain NPD12_133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1330 PF13181 Tetratricopeptide repeat NPD12_1330 PF13431 Tetratricopeptide repeat NPD12_1330 PF13432 Tetratricopeptide repeat NPD12_1332 PF12983 NPD12_1332 NPD12_1333 PF00581 Rhodanese-like domain NPD12_1335 PF01594 NPD12_1335 NPD12_1336 PF03819 MazG nucleotide pyrophosphohydrolase domain NPD12_134 PF00521 DNA gyrase/topoisomerase IV, subunit A NPD12_134 PF03989 DNA gyrase C-terminal domain, beta-propeller NPD12_1341 PF13343 Bacterial extracellular solute-binding protein NPD12_1342 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1343 PF00005 ABC transporter NPD12_1343 PF08402 TOBE domain NPD12_1344 PF13240 NPD12_1344 NPD12_1345 PF13240 NPD12_1345 NPD12_1345 PF13308 YARHG domain NPD12_1346 PF00575 S1 RNA binding domain NPD12_1347 PF13279 Thioesterase-like superfamily NPD12_1348 PF09021 HutP NPD12_1349 PF04392 ABC transporter substrate binding protein NPD12_1350 PF02653 NPD12_1350 NPD12_1351 PF00005 ABC transporter NPD12_1353 PF00155 Aminotransferase class I and II NPD12_1354 PF00892 EamA-like transporter family NPD12_1355 PF00294 pfkB family carbohydrate kinase NPD12_1355 PF13412 Winged helix-turn-helix DNA-binding NPD12_1356 PF04227 Indigoidine synthase A like protein NPD12_1357 PF02558 Ketopantoate reductase PanE/ApbA NPD12_1357 PF08546 Ketopantoate reductase PanE/ApbA C terminal NPD12_1358 PF04961 Formiminotransferase-cyclodeaminase NPD12_1359 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NPD12_1359 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NPD12_1360 PF08282 haloacid dehalogenase-like hydrolase NPD12_1361 PF00583 Acetyltransferase (GNAT) family NPD12_1364 PF02535 NPD12_1364 NPD12_1365 PF02082 Transcriptional regulator NPD12_1366 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_1367 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1368 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_1369 PF00266 Aminotransferase class-V NPD12_1370 PF02540 NAD synthase NPD12_1372 PF03054 tRNA methyl transferase NPD12_1374 PF00072 Response regulator receiver domain NPD12_1374 PF04397 LytTr DNA-binding domain NPD12_1375 PF14501 GHKL domain NPD12_1376 PF00005 ABC transporter NPD12_1377 PF12730 NPD12_1377 NPD12_1378 PF03009 Glycerophosphoryl diester phosphodiesterase family NPD12_1378 PF10110 NPD12_1378 NPD12_1379 PF12655 NPD12_1379 NPD12_1380 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NPD12_1380 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NPD12_1380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPD12_1380 PF10371 Domain of unknown function NPD12_1380 PF12838 4Fe-4S dicluster domain NPD12_1380 PF17147 NPD12_1380 NPD12_1381 PF08922 Domain of unknown function (DUF1905) NPD12_1381 PF13376 NPD12_1381 NPD12_1382 PF02696 NPD12_1382 NPD12_1383 PF01593 Flavin containing amine oxidoreductase NPD12_1384 PF02311 AraC-like ligand binding domain NPD12_1384 PF12833 Helix-turn-helix domain NPD12_1385 PF13347 MFS/sugar transport protein NPD12_1386 PF02055 O-Glycosyl hydrolase family 30 NPD12_1386 PF17189 NPD12_1386 NPD12_1387 PF00480 ROK family NPD12_1388 PF00232 Glycosyl hydrolase family 1 NPD12_1389 PF00686 Starch binding domain NPD12_1389 PF01373 Glycosyl hydrolase family 14 NPD12_1390 PF00579 tRNA synthetases class I (W and Y) NPD12_1390 PF01479 S4 domain NPD12_1391 PF00392 Bacterial regulatory proteins, gntR family NPD12_1392 PF00005 ABC transporter NPD12_1397 PF00704 Glycosyl hydrolases family 18 NPD12_1397 PF01476 LysM domain NPD12_1397 PF08239 Bacterial SH3 domain NPD12_1398 PF00990 GGDEF domain NPD12_1398 PF13426 PAS domain NPD12_1399 PF01842 ACT domain NPD12_1399 PF03315 Serine dehydratase beta chain NPD12_14 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NPD12_14 PF14572 Phosphoribosyl synthetase-associated domain NPD12_140 PF01966 HD domain NPD12_1400 PF03313 NPD12_1400 NPD12_1403 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) NPD12_1404 PF13437 HlyD family secretion protein NPD12_1404 PF13533 Biotin-lipoyl like NPD12_1405 PF00005 ABC transporter NPD12_1405 PF00664 ABC transporter transmembrane region NPD12_1405 PF03412 Peptidase C39 family NPD12_1408 PF01244 Membrane dipeptidase (Peptidase family M19) NPD12_1409 PF04893 NPD12_1409 NPD12_141 PF02829 3H domain NPD12_141 PF08279 HTH domain NPD12_1410 PF02687 NPD12_1410 NPD12_1410 PF12704 MacB-like periplasmic core domain NPD12_1412 PF00005 ABC transporter NPD12_1413 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1413 PF12911 NPD12_1413 NPD12_1414 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1416 PF11007 NPD12_1416 NPD12_1417 PF12652 NPD12_1417 NPD12_1418 PF05067 Manganese containing catalase NPD12_1419 PF09992 Predicted periplasmic protein (DUF2233) NPD12_142 PF04015 NPD12_142 NPD12_142 PF12838 4Fe-4S dicluster domain NPD12_1421 PF04525 Tubby C 2 NPD12_1423 PF00692 dUTPase NPD12_1424 PF08141 NPD12_1424 NPD12_1427 PF09388 Spo0E like sporulation regulatory protein NPD12_1428 PF01381 Helix-turn-helix NPD12_1428 PF07883 Cupin domain NPD12_1429 PF13303 NPD12_1429 NPD12_143 PF03699 NPD12_143 NPD12_1430 PF00440 Bacterial regulatory proteins, tetR family NPD12_1431 PF13783 NPD12_1431 NPD12_1432 PF00005 ABC transporter NPD12_1433 PF12730 NPD12_1433 NPD12_1436 PF01235 NPD12_1436 NPD12_1438 PF01381 Helix-turn-helix NPD12_1439 PF12728 Helix-turn-helix domain NPD12_144 PF03734 L,D-transpeptidase catalytic domain NPD12_1440 PF09922 Cell wall-active antibiotics response protein (DUF2154) NPD12_1440 PF17115 NPD12_1440 NPD12_1441 PF00462 Glutaredoxin NPD12_1442 PF00171 Aldehyde dehydrogenase family NPD12_1443 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1445 PF09338 NPD12_1445 NPD12_1446 PF07355 NPD12_1446 NPD12_1448 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1449 PF00085 Thioredoxin NPD12_145 PF01266 FAD dependent oxidoreductase NPD12_145 PF04324 BFD-like [2Fe-2S] binding domain NPD12_1450 PF04723 NPD12_1450 NPD12_1451 PF04723 NPD12_1451 NPD12_1452 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_1453 PF02504 Fatty acid synthesis protein NPD12_1454 PF02245 Methylpurine-DNA glycosylase (MPG) NPD12_1455 PF07669 Eco57I restriction-modification methylase NPD12_1455 PF12950 TaqI-like C-terminal specificity domain NPD12_1457 PF00589 Phage integrase family NPD12_1457 PF14657 NPD12_1457 NPD12_1458 PF06114 Domain of unknown function (DUF955) NPD12_1459 PF01381 Helix-turn-helix NPD12_146 PF07892 Protein of unknown function (DUF1667) NPD12_1460 PF01381 Helix-turn-helix NPD12_1465 PF00176 SNF2 family N-terminal domain NPD12_1465 PF00271 Helicase conserved C-terminal domain NPD12_1466 PF07083 NPD12_1466 NPD12_1468 PF12705 PD-(D/E)XK nuclease superfamily NPD12_1468 PF13479 NPD12_1468 NPD12_147 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_147 PF02403 Seryl-tRNA synthetase N-terminal domain NPD12_1470 PF05037 NPD12_1470 NPD12_1476 PF07659 NPD12_1476 NPD12_1477 PF03819 MazG nucleotide pyrophosphohydrolase domain NPD12_1479 PF02767 DNA polymerase III beta subunit, central domain NPD12_1479 PF02768 DNA polymerase III beta subunit, C-terminal domain NPD12_1480 PF08706 NPD12_1480 NPD12_1484 PF03592 Terminase small subunit NPD12_1485 PF03237 Terminase-like family NPD12_1485 PF17289 NPD12_1485 NPD12_1486 PF05133 Phage portal protein, SPP1 Gp6-like NPD12_1487 PF04233 NPD12_1487 NPD12_1490 PF06810 NPD12_1490 NPD12_1492 PF05135 Phage gp6-like head-tail connector protein NPD12_1494 PF04883 NPD12_1494 NPD12_1497 PF04984 Phage tail sheath protein NPD12_1497 PF17481 NPD12_1497 NPD12_1497 PF17482 NPD12_1497 NPD12_1498 PF09393 Protein of unknown function (DUF2001) NPD12_1499 PF08890 Phage XkdN-like protein NPD12_15 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_15 PF00483 Nucleotidyl transferase NPD12_1502 PF01476 LysM domain NPD12_1504 PF10844 NPD12_1504 NPD12_1505 PF10934 NPD12_1505 NPD12_1506 PF04865 NPD12_1506 NPD12_1507 PF10076 NPD12_1507 NPD12_1508 PF12571 NPD12_1508 NPD12_1513 PF10779 NPD12_1513 NPD12_1515 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_1515 PF08239 Bacterial SH3 domain NPD12_1516 PF00454 Phosphatidylinositol 3- and 4-kinase NPD12_1517 PF11236 NPD12_1517 NPD12_1519 PF01008 Initiation factor 2 subunit family NPD12_1520 PF00596 Class II Aldolase and Adducin N-terminal domain NPD12_1521 PF00455 NPD12_1521 NPD12_1521 PF08220 DeoR-like helix-turn-helix domain NPD12_1522 PF06305 NPD12_1522 NPD12_1523 PF01545 Cation efflux family NPD12_1523 PF16916 NPD12_1523 NPD12_1524 PF04239 Protein of unknown function (DUF421) NPD12_1525 PF14276 NPD12_1525 NPD12_1526 PF14034 NPD12_1526 NPD12_1528 PF08858 IDEAL domain NPD12_153 PF02666 NPD12_153 NPD12_1530 PF09579 NPD12_1530 NPD12_1531 PF11167 NPD12_1531 NPD12_1533 PF04193 PQ loop repeat NPD12_1534 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_1534 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_1535 PF00941 FAD binding domain in molybdopterin dehydrogenase NPD12_1535 PF03450 CO dehydrogenase flavoprotein C-terminal domain NPD12_1536 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_1536 PF01799 [2Fe-2S] binding domain NPD12_1537 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_1538 PF01131 DNA topoisomerase NPD12_1538 PF01751 Toprim domain NPD12_1539 PF02659 NPD12_1539 NPD12_1540 PF09932 NPD12_1540 NPD12_1541 PF00923 Transaldolase NPD12_1542 PF00753 Metallo-beta-lactamase superfamily NPD12_1542 PF07521 RNA-metabolising metallo-beta-lactamase NPD12_1543 PF01235 NPD12_1543 NPD12_1544 PF00990 GGDEF domain NPD12_1545 PF10096 NPD12_1545 NPD12_1546 PF13641 Glycosyltransferase like family 2 NPD12_1547 PF03170 Bacterial cellulose synthase subunit NPD12_1549 PF13451 NPD12_1549 NPD12_155 PF00005 ABC transporter NPD12_1550 PF10997 NPD12_1550 NPD12_1551 PF02583 Metal-sensitive transcriptional repressor NPD12_1552 PF00122 E1-E2 ATPase NPD12_1552 PF00403 Heavy-metal-associated domain NPD12_1552 PF00702 haloacid dehalogenase-like hydrolase NPD12_1553 PF00403 Heavy-metal-associated domain NPD12_1554 PF00122 E1-E2 ATPase NPD12_1554 PF00702 haloacid dehalogenase-like hydrolase NPD12_1555 PF00005 ABC transporter NPD12_1555 PF00664 ABC transporter transmembrane region NPD12_1556 PF02517 CAAX protease self-immunity NPD12_1557 PF02579 Dinitrogenase iron-molybdenum cofactor NPD12_1558 PF00072 Response regulator receiver domain NPD12_1558 PF00486 Transcriptional regulatory protein, C terminal NPD12_1559 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1560 PF02687 NPD12_1560 NPD12_1561 PF02687 NPD12_1561 NPD12_1562 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_1563 PF12900 Pyridoxamine 5'-phosphate oxidase NPD12_1565 PF09693 NPD12_1565 NPD12_1570 PF10779 NPD12_1570 NPD12_1571 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_1576 PF01230 HIT domain NPD12_1577 PF04020 NPD12_1577 NPD12_1578 PF01478 Type IV leader peptidase family NPD12_1578 PF06750 NPD12_1578 NPD12_1579 PF07907 NPD12_1579 NPD12_1580 PF02080 TrkA-C domain NPD12_1580 PF02254 TrkA-N domain NPD12_1581 PF02386 Cation transport protein NPD12_1582 PF00580 UvrD/REP helicase N-terminal domain NPD12_1582 PF00929 Exonuclease NPD12_1582 PF13361 UvrD-like helicase C-terminal domain NPD12_1583 PF07853 NPD12_1583 NPD12_1584 PF00392 Bacterial regulatory proteins, gntR family NPD12_1585 PF07486 Cell Wall Hydrolase NPD12_1586 PF02915 Rubrerythrin NPD12_1587 PF04122 NPD12_1587 NPD12_1587 PF16800 NPD12_1587 NPD12_1588 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_1588 PF00367 phosphotransferase system, EIIB NPD12_1588 PF02378 Phosphotransferase system, EIIC NPD12_1589 PF01255 Putative undecaprenyl diphosphate synthase NPD12_159 PF02666 NPD12_159 NPD12_1591 PF02082 Transcriptional regulator NPD12_1592 PF03063 Prismane/CO dehydrogenase family NPD12_1593 PF13247 4Fe-4S dicluster domain NPD12_1594 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1595 PF00072 Response regulator receiver domain NPD12_1595 PF00486 Transcriptional regulatory protein, C terminal NPD12_1596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1597 PF02687 NPD12_1597 NPD12_1597 PF12704 MacB-like periplasmic core domain NPD12_1598 PF00005 ABC transporter NPD12_1599 PF00892 EamA-like transporter family NPD12_16 PF04026 SpoVG NPD12_160 PF03109 NPD12_160 NPD12_1600 PF00005 ABC transporter NPD12_1601 PF00005 ABC transporter NPD12_1602 PF11756 NPD12_1602 NPD12_1603 PF00027 Cyclic nucleotide-binding domain NPD12_1603 PF13545 Crp-like helix-turn-helix domain NPD12_1604 PF07690 Major Facilitator Superfamily NPD12_1605 PF01497 Periplasmic binding protein NPD12_1606 PF01032 FecCD transport family NPD12_1607 PF00005 ABC transporter NPD12_1609 PF12838 4Fe-4S dicluster domain NPD12_1610 PF01380 SIS domain NPD12_1610 PF01418 Helix-turn-helix domain, rpiR family NPD12_1611 PF01380 SIS domain NPD12_1612 PF00367 phosphotransferase system, EIIB NPD12_1612 PF02378 Phosphotransferase system, EIIC NPD12_1613 PF05913 Bacterial protein of unknown function (DUF871) NPD12_1614 PF06475 Putative glycolipid-binding NPD12_1615 PF02589 Uncharacterised ACR, YkgG family COG1556 NPD12_1616 PF14342 NPD12_1616 NPD12_1617 PF04122 NPD12_1617 NPD12_1619 PF07870 NPD12_1619 NPD12_1620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1620 PF12729 NPD12_1620 NPD12_1621 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1622 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1623 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1624 PF00005 ABC transporter NPD12_1625 PF00005 ABC transporter NPD12_1627 PF00950 NPD12_1627 NPD12_1628 PF00005 ABC transporter NPD12_1629 PF01297 Periplasmic solute binding protein family NPD12_163 PF00158 Sigma-54 interaction domain NPD12_163 PF13426 PAS domain NPD12_1631 PF00271 Helicase conserved C-terminal domain NPD12_1631 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal NPD12_1632 PF00990 GGDEF domain NPD12_1633 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein NPD12_1634 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1635 PF00005 ABC transporter NPD12_1636 PF01475 Ferric uptake regulator family NPD12_1637 PF02001 NPD12_1637 NPD12_1638 PF00246 Zinc carboxypeptidase NPD12_1638 PF01471 Putative peptidoglycan binding domain NPD12_1638 PF01476 LysM domain NPD12_1639 PF00753 Metallo-beta-lactamase superfamily NPD12_1639 PF12706 Beta-lactamase superfamily domain NPD12_164 PF01053 Cys/Met metabolism PLP-dependent enzyme NPD12_1640 PF13520 Amino acid permease NPD12_1641 PF08000 Bacterial PH domain NPD12_1642 PF07730 Histidine kinase NPD12_1643 PF00072 Response regulator receiver domain NPD12_1643 PF00196 Bacterial regulatory proteins, luxR family NPD12_1644 PF00005 ABC transporter NPD12_1644 PF13732 NPD12_1644 NPD12_1645 PF12698 ABC-2 family transporter protein NPD12_1646 PF12698 ABC-2 family transporter protein NPD12_1648 PF00881 Nitroreductase family NPD12_165 PF14437 NPD12_165 NPD12_1650 PF00313 'Cold-shock' DNA-binding domain NPD12_1651 PF01546 Peptidase family M20/M25/M40 NPD12_1651 PF07687 Peptidase dimerisation domain NPD12_1653 PF08543 Phosphomethylpyrimidine kinase NPD12_1654 PF01625 Peptide methionine sulfoxide reductase NPD12_1655 PF00005 ABC transporter NPD12_1656 PF02687 NPD12_1656 NPD12_1657 PF01464 Transglycosylase SLT domain NPD12_1658 PF00072 Response regulator receiver domain NPD12_1658 PF00486 Transcriptional regulatory protein, C terminal NPD12_1659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1660 PF00005 ABC transporter NPD12_1662 PF11738 Protein of unknown function (DUF3298) NPD12_1663 PF10974 NPD12_1663 NPD12_1664 PF00155 Aminotransferase class I and II NPD12_1665 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_1666 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1667 PF00005 ABC transporter NPD12_1668 PF12844 Helix-turn-helix domain NPD12_1669 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_167 PF12169 DNA polymerase III subunits gamma and tau domain III NPD12_167 PF13177 DNA polymerase III, delta subunit NPD12_1670 PF00293 NUDIX domain NPD12_1672 PF00465 Iron-containing alcohol dehydrogenase NPD12_1674 PF03606 NPD12_1674 NPD12_1676 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_1677 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1679 PF00580 UvrD/REP helicase N-terminal domain NPD12_1679 PF13361 UvrD-like helicase C-terminal domain NPD12_168 PF02575 YbaB/EbfC DNA-binding family NPD12_1681 PF06723 MreB/Mbl protein NPD12_1682 PF01546 Peptidase family M20/M25/M40 NPD12_1682 PF07687 Peptidase dimerisation domain NPD12_1683 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_1684 PF00849 RNA pseudouridylate synthase NPD12_1684 PF01479 S4 domain NPD12_1685 PF01943 NPD12_1685 NPD12_1685 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_1686 PF01943 NPD12_1686 NPD12_1686 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_1687 PF13668 Ferritin-like domain NPD12_1689 PF00465 Iron-containing alcohol dehydrogenase NPD12_169 PF02132 RecR protein NPD12_169 PF13662 Toprim domain NPD12_1690 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_1690 PF13654 AAA domain NPD12_1691 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1692 PF03413 Peptidase propeptide and YPEB domain NPD12_1693 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1693 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1693 PF03413 Peptidase propeptide and YPEB domain NPD12_1693 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1694 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1694 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1694 PF03413 Peptidase propeptide and YPEB domain NPD12_1694 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1695 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1695 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1695 PF03413 Peptidase propeptide and YPEB domain NPD12_1695 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1696 PF01447 Thermolysin metallopeptidase, catalytic domain NPD12_1696 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPD12_1696 PF03413 Peptidase propeptide and YPEB domain NPD12_1696 PF07504 Fungalysin/Thermolysin Propeptide Motif NPD12_1697 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NPD12_1697 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NPD12_1698 PF00890 FAD binding domain NPD12_1699 PF02445 Quinolinate synthetase A protein NPD12_17 PF00156 Phosphoribosyl transferase domain NPD12_17 PF09182 Bacterial purine repressor, N-terminal NPD12_170 PF10704 NPD12_170 NPD12_1700 PF04389 Peptidase family M28 NPD12_1701 PF03006 NPD12_1701 NPD12_1702 PF01926 50S ribosome-binding GTPase NPD12_1702 PF06071 Protein of unknown function (DUF933) NPD12_1703 PF02381 MraZ protein NPD12_1704 PF01795 MraW methylase family NPD12_1705 PF04999 NPD12_1705 NPD12_1706 PF00905 Penicillin binding protein transpeptidase domain NPD12_1706 PF03717 Penicillin-binding Protein dimerisation domain NPD12_1706 PF03793 PASTA domain NPD12_1707 PF01225 Mur ligase family, catalytic domain NPD12_1707 PF02875 Mur ligase family, glutamate ligase domain NPD12_1707 PF08245 Mur ligase middle domain NPD12_1708 PF01225 Mur ligase family, catalytic domain NPD12_1708 PF02875 Mur ligase family, glutamate ligase domain NPD12_1708 PF08245 Mur ligase middle domain NPD12_1709 PF00953 Glycosyl transferase family 4 NPD12_1709 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NPD12_171 PF07441 NPD12_171 NPD12_1710 PF01098 NPD12_1710 NPD12_1711 PF03799 Cell division protein FtsQ NPD12_1711 PF08478 POTRA domain, FtsQ-type NPD12_1712 PF05949 Bacterial protein of unknown function (DUF881) NPD12_1713 PF06947 NPD12_1713 NPD12_1714 PF05949 Bacterial protein of unknown function (DUF881) NPD12_1715 PF01168 Alanine racemase, N-terminal domain NPD12_1716 PF04472 Protein of unknown function (DUF552) NPD12_1717 PF02325 NPD12_1717 NPD12_1719 PF05103 DivIVA protein NPD12_172 PF03749 Sugar fermentation stimulation protein NPD12_1720 PF01761 3-dehydroquinate synthase NPD12_1721 PF01048 Phosphorylase superfamily NPD12_1722 PF00793 DAHP synthetase I family NPD12_1723 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPD12_1724 PF01258 Prokaryotic dksA/traR C4-type zinc finger NPD12_1725 PF01252 NPD12_1725 NPD12_1726 PF00849 RNA pseudouridylate synthase NPD12_1726 PF01479 S4 domain NPD12_1727 PF00156 Phosphoribosyl transferase domain NPD12_1728 PF00860 Permease family NPD12_1729 PF03372 Endonuclease/Exonuclease/phosphatase family NPD12_173 PF00293 NUDIX domain NPD12_1730 PF01170 Putative RNA methylase family UPF0020 NPD12_1730 PF02926 THUMP domain NPD12_1732 PF13531 Bacterial extracellular solute-binding protein NPD12_1733 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1734 PF00005 ABC transporter NPD12_1736 PF01734 Patatin-like phospholipase NPD12_1738 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_1739 PF03553 NPD12_1739 NPD12_1740 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_1740 PF14574 Domain of unknown function (DUF4445) NPD12_1741 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPD12_1741 PF07683 Cobalamin synthesis protein cobW C-terminal domain NPD12_1742 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_1743 PF02310 B12 binding domain NPD12_1743 PF02607 B12 binding domain NPD12_1744 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_1745 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_1746 PF00005 ABC transporter NPD12_1746 PF09383 NIL domain NPD12_1747 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1748 PF03180 NLPA lipoprotein NPD12_1749 PF02493 MORN repeat NPD12_175 PF00037 4Fe-4S binding domain NPD12_175 PF12724 Flavodoxin domain NPD12_1750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NPD12_1751 PF03590 Aspartate-ammonia ligase NPD12_1752 PF00355 Rieske [2Fe-2S] domain NPD12_1752 PF01266 FAD dependent oxidoreductase NPD12_1753 PF01131 DNA topoisomerase NPD12_1753 PF01751 Toprim domain NPD12_1754 PF00488 MutS domain V NPD12_1755 PF00248 Aldo/keto reductase family NPD12_1755 PF13534 4Fe-4S dicluster domain NPD12_1756 PF04073 Aminoacyl-tRNA editing domain NPD12_1758 PF00005 ABC transporter NPD12_1759 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1760 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1761 PF13416 Bacterial extracellular solute-binding protein NPD12_1762 PF00056 lactate/malate dehydrogenase, NAD binding domain NPD12_1762 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NPD12_1763 PF00392 Bacterial regulatory proteins, gntR family NPD12_1763 PF07729 FCD domain NPD12_1764 PF09719 Putative redox-active protein (C_GCAxxG_C_C) NPD12_1765 PF03595 Voltage-dependent anion channel NPD12_1766 PF00990 GGDEF domain NPD12_1766 PF13426 PAS domain NPD12_1766 PF13487 HD domain NPD12_1767 PF03860 Domain of Unknown Function (DUF326) NPD12_1768 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1768 PF02743 Cache domain NPD12_1769 PF01047 MarR family NPD12_177 PF00899 ThiF family NPD12_1770 PF12724 Flavodoxin domain NPD12_1771 PF01638 HxlR-like helix-turn-helix NPD12_1772 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_1773 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NPD12_1774 PF09370 TIM-barrel signal transduction protein NPD12_1774 PF12833 Helix-turn-helix domain NPD12_1775 PF06792 Uncharacterised protein family (UPF0261) NPD12_1776 PF09370 TIM-barrel signal transduction protein NPD12_1777 PF01381 Helix-turn-helix NPD12_1778 PF00689 Cation transporting ATPase, C-terminus NPD12_1779 PF01545 Cation efflux family NPD12_1779 PF16916 NPD12_1779 NPD12_178 PF07690 Major Facilitator Superfamily NPD12_1780 PF00854 POT family NPD12_1781 PF01325 Iron dependent repressor, N-terminal DNA binding domain NPD12_1781 PF02742 Iron dependent repressor, metal binding and dimerisation domain NPD12_1783 PF08668 HDOD domain NPD12_1784 PF00122 E1-E2 ATPase NPD12_1784 PF00689 Cation transporting ATPase, C-terminus NPD12_1784 PF00690 Cation transporter/ATPase, N-terminus NPD12_1784 PF00702 haloacid dehalogenase-like hydrolase NPD12_1785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_1786 PF04657 NPD12_1786 NPD12_1787 PF04657 NPD12_1787 NPD12_1788 PF13545 Crp-like helix-turn-helix domain NPD12_1789 PF00196 Bacterial regulatory proteins, luxR family NPD12_179 PF13302 Acetyltransferase (GNAT) domain NPD12_1790 PF12674 NPD12_1790 NPD12_1790 PF14526 Integron-associated effector binding protein NPD12_1791 PF08279 HTH domain NPD12_1791 PF13280 NPD12_1791 NPD12_1792 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_1793 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_1794 PF01242 6-pyruvoyl tetrahydropterin synthase NPD12_1795 PF04055 Radical SAM superfamily NPD12_1795 PF13394 4Fe-4S single cluster domain NPD12_1796 PF01227 GTP cyclohydrolase I NPD12_1797 PF06508 Queuosine biosynthesis protein QueC NPD12_1798 PF02517 CAAX protease self-immunity NPD12_1799 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_18 PF01225 Mur ligase family, catalytic domain NPD12_18 PF02875 Mur ligase family, glutamate ligase domain NPD12_18 PF08245 Mur ligase middle domain NPD12_1800 PF06161 NPD12_1800 NPD12_1802 PF04198 Putative sugar-binding domain NPD12_1803 PF01791 DeoC/LacD family aldolase NPD12_1804 PF00294 pfkB family carbohydrate kinase NPD12_1805 PF13393 Histidyl-tRNA synthetase NPD12_1806 PF01634 ATP phosphoribosyltransferase NPD12_1807 PF00815 Histidinol dehydrogenase NPD12_1808 PF00475 Imidazoleglycerol-phosphate dehydratase NPD12_1809 PF00117 Glutamine amidotransferase class-I NPD12_1810 PF00977 Histidine biosynthesis protein NPD12_1811 PF00155 Aminotransferase class I and II NPD12_1812 PF00977 Histidine biosynthesis protein NPD12_1813 PF01502 Phosphoribosyl-AMP cyclohydrolase NPD12_1814 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NPD12_1815 PF04143 NPD12_1815 NPD12_1816 PF01206 Sulfurtransferase TusA NPD12_1817 PF04143 NPD12_1817 NPD12_1818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_1818 PF03466 LysR substrate binding domain NPD12_1819 PF01235 NPD12_1819 NPD12_1820 PF00581 Rhodanese-like domain NPD12_1820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_1820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1821 PF04143 NPD12_1821 NPD12_1822 PF00005 ABC transporter NPD12_1824 PF12730 NPD12_1824 NPD12_1825 PF00072 Response regulator receiver domain NPD12_1825 PF00486 Transcriptional regulatory protein, C terminal NPD12_1826 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1827 PF02274 Amidinotransferase NPD12_1828 PF13520 Amino acid permease NPD12_1829 PF03006 NPD12_1829 NPD12_1830 PF08876 NPD12_1830 NPD12_1831 PF13023 HD domain NPD12_1832 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_1832 PF08388 NPD12_1832 NPD12_1832 PF13655 NPD12_1832 NPD12_1833 PF01844 HNH endonuclease NPD12_1836 PF12788 NPD12_1836 NPD12_1837 PF00176 SNF2 family N-terminal domain NPD12_1837 PF00271 Helicase conserved C-terminal domain NPD12_1837 PF08455 NPD12_1837 NPD12_1838 PF04607 Region found in RelA / SpoT proteins NPD12_1839 PF09537 Domain of unknown function (DUF2383) NPD12_184 PF03167 Uracil DNA glycosylase superfamily NPD12_1840 PF12833 Helix-turn-helix domain NPD12_1841 PF00005 ABC transporter NPD12_1841 PF00664 ABC transporter transmembrane region NPD12_1842 PF00005 ABC transporter NPD12_1842 PF00664 ABC transporter transmembrane region NPD12_1843 PF00356 Bacterial regulatory proteins, lacI family NPD12_1843 PF13377 Periplasmic binding protein-like domain NPD12_1844 PF00480 ROK family NPD12_1845 PF00128 Alpha amylase, catalytic domain NPD12_1846 PF00367 phosphotransferase system, EIIB NPD12_1846 PF02378 Phosphotransferase system, EIIC NPD12_1847 PF03372 Endonuclease/Exonuclease/phosphatase family NPD12_1848 PF02659 NPD12_1848 NPD12_1849 PF03091 CutA1 divalent ion tolerance protein NPD12_1852 PF00512 His Kinase A (phospho-acceptor) domain NPD12_1852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_1853 PF00072 Response regulator receiver domain NPD12_1853 PF00486 Transcriptional regulatory protein, C terminal NPD12_1854 PF07690 Major Facilitator Superfamily NPD12_1855 PF08282 haloacid dehalogenase-like hydrolase NPD12_1856 PF00455 NPD12_1856 NPD12_1856 PF08220 DeoR-like helix-turn-helix domain NPD12_1858 PF04542 Sigma-70 region 2 NPD12_1858 PF08281 Sigma-70, region 4 NPD12_1859 PF12841 NPD12_1859 NPD12_1860 PF00801 PKD domain NPD12_1860 PF01752 Collagenase NPD12_1860 PF04151 Bacterial pre-peptidase C-terminal domain NPD12_1860 PF08453 Peptidase family M9 N-terminal NPD12_1861 PF02219 Methylenetetrahydrofolate reductase NPD12_1863 PF00809 Pterin binding enzyme NPD12_1863 PF02310 B12 binding domain NPD12_1863 PF02574 Homocysteine S-methyltransferase NPD12_1863 PF02607 B12 binding domain NPD12_1865 PF04542 Sigma-70 region 2 NPD12_1866 PF13786 Domain of unknown function (DUF4179) NPD12_1867 PF00158 Sigma-54 interaction domain NPD12_1867 PF02954 Bacterial regulatory protein, Fis family NPD12_1868 PF09585 Conserved hypothetical protein (Lin0512_fam) NPD12_1869 PF00676 Dehydrogenase E1 component NPD12_1870 PF02779 Transketolase, pyrimidine binding domain NPD12_1870 PF02780 Transketolase, C-terminal domain NPD12_1871 PF01513 ATP-NAD kinase NPD12_1872 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NPD12_1872 PF00364 Biotin-requiring enzyme NPD12_1872 PF02817 e3 binding domain NPD12_1873 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_1873 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1874 PF03099 Biotin/lipoate A/B protein ligase family NPD12_1874 PF10437 Bacterial lipoate protein ligase C-terminus NPD12_1875 PF00005 ABC transporter NPD12_1875 PF00571 CBS domain NPD12_1876 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1876 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NPD12_1877 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_1877 PF14821 Threonine synthase N terminus NPD12_1878 PF00288 GHMP kinases N terminal domain NPD12_1878 PF08544 GHMP kinases C terminal NPD12_1879 PF00696 Amino acid kinase family NPD12_1880 PF00742 Homoserine dehydrogenase NPD12_1880 PF01842 ACT domain NPD12_1880 PF03447 Homoserine dehydrogenase, NAD binding domain NPD12_1881 PF00158 Sigma-54 interaction domain NPD12_1881 PF02954 Bacterial regulatory protein, Fis family NPD12_1881 PF13188 PAS domain NPD12_1882 PF00465 Iron-containing alcohol dehydrogenase NPD12_1883 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_1884 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_1884 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_1885 PF00158 Sigma-54 interaction domain NPD12_1885 PF02954 Bacterial regulatory protein, Fis family NPD12_1886 PF13599 Pentapeptide repeats (9 copies) NPD12_1887 PF02368 Bacterial Ig-like domain (group 2) NPD12_189 PF04542 Sigma-70 region 2 NPD12_189 PF08281 Sigma-70, region 4 NPD12_1890 PF07411 Domain of unknown function (DUF1508) NPD12_1895 PF11611 Domain of unknown function (DUF4352) NPD12_1896 PF02954 Bacterial regulatory protein, Fis family NPD12_1898 PF01814 Hemerythrin HHE cation binding domain NPD12_1899 PF00842 Alanine racemase, C-terminal domain NPD12_1899 PF01168 Alanine racemase, N-terminal domain NPD12_190 PF13786 Domain of unknown function (DUF4179) NPD12_1900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1900 PF13682 Chemoreceptor zinc-binding domain NPD12_1901 PF00860 Permease family NPD12_1902 PF06161 NPD12_1902 NPD12_1903 PF13561 Enoyl-(Acyl carrier protein) reductase NPD12_1904 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1904 PF02743 Cache domain NPD12_1905 PF14903 NPD12_1905 NPD12_1907 PF00176 SNF2 family N-terminal domain NPD12_1907 PF00271 Helicase conserved C-terminal domain NPD12_1907 PF08455 NPD12_1907 NPD12_1908 PF01980 Uncharacterised protein family UPF0066 NPD12_1909 PF01258 Prokaryotic dksA/traR C4-type zinc finger NPD12_1909 PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon NPD12_1910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_1911 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1912 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_1913 PF00005 ABC transporter NPD12_1913 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_1914 PF00929 Exonuclease NPD12_1915 PF06207 NPD12_1915 NPD12_1916 PF08241 Methyltransferase domain NPD12_1917 PF00294 pfkB family carbohydrate kinase NPD12_1918 PF00854 POT family NPD12_1921 PF12671 NPD12_1921 NPD12_1923 PF00294 pfkB family carbohydrate kinase NPD12_1924 PF00188 Cysteine-rich secretory protein family NPD12_1924 PF01476 LysM domain NPD12_1926 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1926 PF02743 Cache domain NPD12_1927 PF00005 ABC transporter NPD12_1927 PF12848 ABC transporter NPD12_1928 PF00037 4Fe-4S binding domain NPD12_1928 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPD12_1928 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPD12_1929 PF00072 Response regulator receiver domain NPD12_1929 PF01584 CheW-like domain NPD12_1930 PF00270 DEAD/DEAH box helicase NPD12_1930 PF00271 Helicase conserved C-terminal domain NPD12_1931 PF00575 S1 RNA binding domain NPD12_1931 PF13509 S1 domain NPD12_1932 PF00270 DEAD/DEAH box helicase NPD12_1932 PF00271 Helicase conserved C-terminal domain NPD12_1932 PF03880 DbpA RNA binding domain NPD12_1933 PF07532 NPD12_1933 NPD12_1933 PF16472 NPD12_1933 NPD12_1934 PF07532 NPD12_1934 NPD12_1934 PF12799 Leucine Rich repeats (2 copies) NPD12_1934 PF16472 NPD12_1934 NPD12_1935 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPD12_1936 PF00210 Ferritin-like domain NPD12_1937 PF00072 Response regulator receiver domain NPD12_1937 PF13690 Chemotaxis phosphatase CheX NPD12_1938 PF13690 Chemotaxis phosphatase CheX NPD12_1939 PF07670 Nucleoside recognition NPD12_1940 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_1941 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_1943 PF00589 Phage integrase family NPD12_1943 PF02899 Phage integrase, N-terminal SAM-like domain NPD12_1945 PF00717 Peptidase S24-like NPD12_1945 PF01726 LexA DNA binding domain NPD12_1946 PF06838 Methionine gamma-lyase NPD12_1947 PF17209 NPD12_1947 NPD12_1948 PF01715 IPP transferase NPD12_1949 PF01119 DNA mismatch repair protein, C-terminal domain NPD12_1949 PF08676 MutL C terminal dimerisation domain NPD12_1949 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_195 PF04914 DltD C-terminal region NPD12_1950 PF00488 MutS domain V NPD12_1950 PF01624 MutS domain I NPD12_1950 PF05188 MutS domain II NPD12_1950 PF05190 MutS family domain IV NPD12_1950 PF05192 MutS domain III NPD12_1951 PF00919 Uncharacterized protein family UPF0004 NPD12_1951 PF01938 TRAM domain NPD12_1951 PF04055 Radical SAM superfamily NPD12_1952 PF00155 Aminotransferase class I and II NPD12_1954 PF00155 Aminotransferase class I and II NPD12_1955 PF00583 Acetyltransferase (GNAT) family NPD12_1957 PF00575 S1 RNA binding domain NPD12_1957 PF02401 LytB protein NPD12_1958 PF02224 Cytidylate kinase NPD12_1959 PF07736 Chorismate mutase type I NPD12_1960 PF03486 HI0933-like protein NPD12_1961 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NPD12_1961 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NPD12_1962 PF01380 SIS domain NPD12_1962 PF01418 Helix-turn-helix domain, rpiR family NPD12_1963 PF00849 RNA pseudouridylate synthase NPD12_1963 PF01479 S4 domain NPD12_1964 PF09861 Domain of unknown function (DUF2088) NPD12_1965 PF03313 NPD12_1965 NPD12_1966 PF13641 Glycosyltransferase like family 2 NPD12_1968 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_1968 PF00672 HAMP domain NPD12_1968 PF17203 NPD12_1968 NPD12_1969 PF02683 NPD12_1969 NPD12_1970 PF00085 Thioredoxin NPD12_1971 PF00795 Carbon-nitrogen hydrolase NPD12_1973 PF00999 Sodium/hydrogen exchanger family NPD12_1973 PF02080 TrkA-C domain NPD12_1974 PF02627 Carboxymuconolactone decarboxylase family NPD12_1975 PF00583 Acetyltransferase (GNAT) family NPD12_1976 PF00581 Rhodanese-like domain NPD12_1977 PF01906 Putative heavy-metal-binding NPD12_1979 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin NPD12_1980 PF02906 Iron only hydrogenase large subunit, C-terminal domain NPD12_1980 PF04060 Putative Fe-S cluster NPD12_1980 PF12838 4Fe-4S dicluster domain NPD12_1981 PF07228 Stage II sporulation protein E (SpoIIE) NPD12_1982 PF02906 Iron only hydrogenase large subunit, C-terminal domain NPD12_1982 PF04060 Putative Fe-S cluster NPD12_1982 PF12838 4Fe-4S dicluster domain NPD12_1983 PF00586 AIR synthase related protein, N-terminal domain NPD12_1983 PF02769 AIR synthase related protein, C-terminal domain NPD12_1984 PF01924 Hydrogenase formation hypA family NPD12_1985 PF01455 HupF/HypC family NPD12_1986 PF00708 Acylphosphatase NPD12_1986 PF01300 Telomere recombination NPD12_1986 PF07503 HypF finger NPD12_1987 PF00173 Cytochrome b5-like Heme/Steroid binding domain NPD12_1988 PF01750 Hydrogenase maturation protease NPD12_1989 PF00374 Nickel-dependent hydrogenase NPD12_1990 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NPD12_1990 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NPD12_1991 PF05857 NPD12_1991 NPD12_1993 PF02142 MGS-like domain NPD12_1993 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_1993 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NPD12_1994 PF00117 Glutamine amidotransferase class-I NPD12_1994 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NPD12_1997 PF01061 NPD12_1997 NPD12_1999 PF00005 ABC transporter NPD12_1999 PF12848 ABC transporter NPD12_2 PF07873 YabP family NPD12_200 PF13616 PPIC-type PPIASE domain NPD12_2000 PF02256 Iron hydrogenase small subunit NPD12_2000 PF02906 Iron only hydrogenase large subunit, C-terminal domain NPD12_2000 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NPD12_2000 PF13187 4Fe-4S dicluster domain NPD12_2000 PF13510 2Fe-2S iron-sulfur cluster binding domain NPD12_2001 PF00037 4Fe-4S binding domain NPD12_2001 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin NPD12_2001 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2001 PF10531 SLBB domain NPD12_2001 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NPD12_2002 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin NPD12_2003 PF00999 Sodium/hydrogen exchanger family NPD12_2004 PF03747 ADP-ribosylglycohydrolase NPD12_2005 PF01594 NPD12_2005 NPD12_2006 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_2006 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_2007 PF11167 NPD12_2007 NPD12_2008 PF09579 NPD12_2008 NPD12_2009 PF04079 Putative transcriptional regulators (Ypuh-like) NPD12_2010 PF02616 ScpA/B protein NPD12_2012 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_2012 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_2013 PF12787 NPD12_2013 NPD12_2016 PF00591 Glycosyl transferase family, a/b domain NPD12_2016 PF02885 Glycosyl transferase family, helical bundle domain NPD12_2016 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NPD12_2017 PF01048 Phosphorylase superfamily NPD12_2018 PF00589 Phage integrase family NPD12_2018 PF02899 Phage integrase, N-terminal SAM-like domain NPD12_2020 PF01944 NPD12_2020 NPD12_2021 PF00293 NUDIX domain NPD12_2022 PF13520 Amino acid permease NPD12_2023 PF00877 NlpC/P60 family NPD12_2028 PF09851 NPD12_2028 NPD12_2028 PF14470 Bacterial PH domain NPD12_2029 PF01471 Putative peptidoglycan binding domain NPD12_2030 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_2032 PF01548 NPD12_2032 NPD12_2032 PF02371 NPD12_2032 NPD12_2034 PF13238 AAA domain NPD12_2037 PF00589 Phage integrase family NPD12_2038 PF00072 Response regulator receiver domain NPD12_2038 PF08769 Sporulation initiation factor Spo0A C terminal NPD12_2039 PF05580 NPD12_2039 NPD12_2039 PF13180 PDZ domain NPD12_204 PF02146 Sir2 family NPD12_2040 PF04204 Homoserine O-succinyltransferase NPD12_2041 PF00742 Homoserine dehydrogenase NPD12_2041 PF03447 Homoserine dehydrogenase, NAD binding domain NPD12_2042 PF01053 Cys/Met metabolism PLP-dependent enzyme NPD12_2043 PF02463 RecF/RecN/SMC N terminal domain NPD12_2044 PF01316 Arginine repressor, DNA binding domain NPD12_2044 PF02863 Arginine repressor, C-terminal domain NPD12_2045 PF01513 ATP-NAD kinase NPD12_2046 PF01479 S4 domain NPD12_2046 PF01728 FtsJ-like methyltransferase NPD12_2047 PF02779 Transketolase, pyrimidine binding domain NPD12_2047 PF02780 Transketolase, C-terminal domain NPD12_2047 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NPD12_2049 PF00348 Polyprenyl synthetase NPD12_2050 PF02609 Exonuclease VII small subunit NPD12_2051 PF02601 NPD12_2051 NPD12_2051 PF13742 NPD12_2051 NPD12_2052 PF01029 NusB family NPD12_2053 PF03780 NPD12_2053 NPD12_2054 PF12685 SpoIIIAH-like protein NPD12_2056 PF09581 NPD12_2056 NPD12_2057 PF09546 NPD12_2057 NPD12_2058 PF06686 NPD12_2058 NPD12_2059 PF06686 NPD12_2059 NPD12_206 PF02016 LD-carboxypeptidase NPD12_2060 PF09548 NPD12_2060 NPD12_2063 PF01132 Elongation factor P (EF-P) OB domain NPD12_2063 PF08207 Elongation factor P (EF-P) KOW-like domain NPD12_2063 PF09285 Elongation factor P, C-terminal NPD12_2064 PF01220 Dehydroquinase class II NPD12_2065 PF01202 Shikimate kinase NPD12_207 PF01544 CorA-like Mg2+ transporter protein NPD12_2070 PF07963 Prokaryotic N-terminal methylation motif NPD12_2073 PF07963 Prokaryotic N-terminal methylation motif NPD12_2074 PF00482 Type II secretion system (T2SS), protein F NPD12_2075 PF00437 Type II/IV secretion system protein NPD12_2075 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NPD12_2077 PF01678 Diaminopimelate epimerase NPD12_2078 PF05670 NPD12_2078 NPD12_2078 PF05833 Fibronectin-binding protein A N-terminus (FbpA) NPD12_2079 PF01416 tRNA pseudouridine synthase NPD12_2081 PF01230 HIT domain NPD12_2082 PF00282 Pyridoxal-dependent decarboxylase conserved domain NPD12_2084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2084 PF12729 NPD12_2084 NPD12_2085 PF03415 Clostripain family NPD12_2087 PF00072 Response regulator receiver domain NPD12_2087 PF00486 Transcriptional regulatory protein, C terminal NPD12_2088 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2089 PF01625 Peptide methionine sulfoxide reductase NPD12_2090 PF00072 Response regulator receiver domain NPD12_2091 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2092 PF00072 Response regulator receiver domain NPD12_2092 PF00486 Transcriptional regulatory protein, C terminal NPD12_2094 PF12679 NPD12_2094 NPD12_2095 PF00005 ABC transporter NPD12_2096 PF00005 ABC transporter NPD12_2096 PF00664 ABC transporter transmembrane region NPD12_2097 PF00005 ABC transporter NPD12_2097 PF00664 ABC transporter transmembrane region NPD12_2098 PF01047 MarR family NPD12_2099 PF00583 Acetyltransferase (GNAT) family NPD12_21 PF00037 4Fe-4S binding domain NPD12_21 PF02906 Iron only hydrogenase large subunit, C-terminal domain NPD12_210 PF10764 NPD12_210 NPD12_2100 PF00899 ThiF family NPD12_2101 PF02597 ThiS family NPD12_2102 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 NPD12_2102 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain NPD12_2103 PF00158 Sigma-54 interaction domain NPD12_2103 PF02954 Bacterial regulatory protein, Fis family NPD12_2103 PF13426 PAS domain NPD12_2105 PF01967 MoaC family NPD12_2106 PF04055 Radical SAM superfamily NPD12_2106 PF06463 Molybdenum Cofactor Synthesis C NPD12_2106 PF13394 4Fe-4S single cluster domain NPD12_2107 PF00994 Probable molybdopterin binding domain NPD12_2107 PF03453 MoeA N-terminal region (domain I and II) NPD12_2107 PF03454 MoeA C-terminal region (domain IV) NPD12_2107 PF12727 PBP superfamily domain NPD12_2108 PF00994 Probable molybdopterin binding domain NPD12_2108 PF03453 MoeA N-terminal region (domain I and II) NPD12_2108 PF03454 MoeA C-terminal region (domain IV) NPD12_2109 PF00994 Probable molybdopterin binding domain NPD12_211 PF01276 Orn/Lys/Arg decarboxylase, major domain NPD12_211 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NPD12_2110 PF00005 ABC transporter NPD12_2111 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2112 PF12849 PBP superfamily domain NPD12_2113 PF01554 MatE NPD12_2115 PF09335 NPD12_2115 NPD12_2116 PF00005 ABC transporter NPD12_2117 PF02687 NPD12_2117 NPD12_2117 PF12704 MacB-like periplasmic core domain NPD12_2119 PF00561 alpha/beta hydrolase fold NPD12_212 PF02223 Thymidylate kinase NPD12_2120 PF00005 ABC transporter NPD12_2120 PF00664 ABC transporter transmembrane region NPD12_2121 PF00005 ABC transporter NPD12_2121 PF00664 ABC transporter transmembrane region NPD12_2122 PF13411 MerR HTH family regulatory protein NPD12_2123 PF03358 NADPH-dependent FMN reductase NPD12_2124 PF00122 E1-E2 ATPase NPD12_2124 PF00689 Cation transporting ATPase, C-terminus NPD12_2124 PF00690 Cation transporter/ATPase, N-terminus NPD12_2124 PF00702 haloacid dehalogenase-like hydrolase NPD12_2125 PF00440 Bacterial regulatory proteins, tetR family NPD12_2126 PF12799 Leucine Rich repeats (2 copies) NPD12_2129 PF01909 Nucleotidyltransferase domain NPD12_213 PF06153 Protein of unknown function (DUF970) NPD12_2130 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2130 PF00672 HAMP domain NPD12_2130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2131 PF00072 Response regulator receiver domain NPD12_2131 PF00486 Transcriptional regulatory protein, C terminal NPD12_2132 PF02596 NPD12_2132 NPD12_2133 PF02361 Cobalt transport protein NPD12_2134 PF00005 ABC transporter NPD12_2135 PF09819 NPD12_2135 NPD12_2136 PF01168 Alanine racemase, N-terminal domain NPD12_2137 PF03845 NPD12_2137 NPD12_2138 PF03323 NPD12_2138 NPD12_2139 PF03845 NPD12_2139 NPD12_214 PF09115 DNA polymerase III, delta subunit, C terminal NPD12_214 PF13177 DNA polymerase III, delta subunit NPD12_2140 PF05504 Spore germination B3/ GerAC like, C-terminal NPD12_2141 PF03845 NPD12_2141 NPD12_2142 PF09719 Putative redox-active protein (C_GCAxxG_C_C) NPD12_2143 PF02627 Carboxymuconolactone decarboxylase family NPD12_2144 PF04055 Radical SAM superfamily NPD12_2144 PF12345 NPD12_2144 NPD12_2144 PF13353 4Fe-4S single cluster domain NPD12_2145 PF00515 Tetratricopeptide repeat NPD12_2145 PF13414 TPR repeat NPD12_2146 PF00999 Sodium/hydrogen exchanger family NPD12_2146 PF02080 TrkA-C domain NPD12_2147 PF00183 Hsp90 protein NPD12_2147 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2148 PF00488 MutS domain V NPD12_2149 PF00367 phosphotransferase system, EIIB NPD12_2149 PF02378 Phosphotransferase system, EIIC NPD12_215 PF04468 NPD12_215 NPD12_2150 PF00128 Alpha amylase, catalytic domain NPD12_2150 PF16657 NPD12_2150 NPD12_2151 PF00392 Bacterial regulatory proteins, gntR family NPD12_2151 PF07702 UTRA domain NPD12_2152 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_2153 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_2153 PF02378 Phosphotransferase system, EIIC NPD12_2154 PF00294 pfkB family carbohydrate kinase NPD12_2155 PF01116 Fructose-bisphosphate aldolase class-II NPD12_2156 PF01380 SIS domain NPD12_2156 PF01418 Helix-turn-helix domain, rpiR family NPD12_2157 PF11208 NPD12_2157 NPD12_2158 PF01042 Endoribonuclease L-PSP NPD12_2159 PF04055 Radical SAM superfamily NPD12_216 PF00403 Heavy-metal-associated domain NPD12_2160 PF00465 Iron-containing alcohol dehydrogenase NPD12_2161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2161 PF00672 HAMP domain NPD12_2161 PF17203 NPD12_2161 NPD12_2162 PF01168 Alanine racemase, N-terminal domain NPD12_2163 PF03477 ATP cone domain NPD12_2164 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPD12_2164 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPD12_2165 PF00156 Phosphoribosyl transferase domain NPD12_2167 PF00990 GGDEF domain NPD12_2168 PF03313 NPD12_2168 NPD12_2169 PF00158 Sigma-54 interaction domain NPD12_217 PF12838 4Fe-4S dicluster domain NPD12_2170 PF00270 DEAD/DEAH box helicase NPD12_2170 PF00271 Helicase conserved C-terminal domain NPD12_2171 PF00188 Cysteine-rich secretory protein family NPD12_2172 PF00155 Aminotransferase class I and II NPD12_2172 PF00392 Bacterial regulatory proteins, gntR family NPD12_2173 PF00892 EamA-like transporter family NPD12_2174 PF00155 Aminotransferase class I and II NPD12_2175 PF00005 ABC transporter NPD12_2176 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2177 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_2178 PF09861 Domain of unknown function (DUF2088) NPD12_2179 PF00266 Aminotransferase class-V NPD12_218 PF05175 Methyltransferase small domain NPD12_2180 PF00302 Chloramphenicol acetyltransferase NPD12_2181 PF09855 NPD12_2181 NPD12_2182 PF02229 Transcriptional Coactivator p15 (PC4) NPD12_2185 PF01381 Helix-turn-helix NPD12_2187 PF07690 Major Facilitator Superfamily NPD12_2188 PF07690 Major Facilitator Superfamily NPD12_2189 PF00557 Metallopeptidase family M24 NPD12_2189 PF01321 Creatinase/Prolidase N-terminal domain NPD12_219 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_2190 PF00561 alpha/beta hydrolase fold NPD12_2191 PF00209 Sodium:neurotransmitter symporter family NPD12_2193 PF11187 Protein of unknown function (DUF2974) NPD12_2194 PF00881 Nitroreductase family NPD12_2195 PF00092 von Willebrand factor type A domain NPD12_2198 PF06100 Streptococcal 67 kDa myosin-cross-reactive antigen like family NPD12_2199 PF00440 Bacterial regulatory proteins, tetR family NPD12_22 PF13419 Haloacid dehalogenase-like hydrolase NPD12_220 PF00877 NlpC/P60 family NPD12_2200 PF07505 NPD12_2200 NPD12_2201 PF07505 NPD12_2201 NPD12_2202 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2204 PF00535 Glycosyl transferase family 2 NPD12_2205 PF00535 Glycosyl transferase family 2 NPD12_2206 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2207 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_2208 PF00535 Glycosyl transferase family 2 NPD12_2209 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2209 PF00483 Nucleotidyl transferase NPD12_221 PF04014 Antidote-toxin recognition MazE NPD12_2210 PF16363 NPD12_2210 NPD12_2211 PF14242 NPD12_2211 NPD12_2212 PF14242 NPD12_2212 NPD12_2215 PF04892 NPD12_2215 NPD12_2216 PF07969 Amidohydrolase family NPD12_2217 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NPD12_222 PF08876 NPD12_222 NPD12_2220 PF12395 NPD12_2220 NPD12_2221 PF00583 Acetyltransferase (GNAT) family NPD12_2223 PF01420 Type I restriction modification DNA specificity domain NPD12_2224 PF02384 N-6 DNA Methylase NPD12_2224 PF12161 HsdM N-terminal domain NPD12_2225 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NPD12_2225 PF04851 Type III restriction enzyme, res subunit NPD12_2225 PF12008 Type I restriction and modification enzyme - subunit R C terminal NPD12_2227 PF13304 AAA domain NPD12_2229 PF13395 HNH endonuclease NPD12_223 PF02274 Amidinotransferase NPD12_2230 PF16363 NPD12_2230 NPD12_2231 PF00535 Glycosyl transferase family 2 NPD12_2232 PF00534 Glycosyl transferases group 1 NPD12_2232 PF00535 Glycosyl transferase family 2 NPD12_2232 PF13439 Glycosyltransferase Family 4 NPD12_2233 PF03551 Transcriptional regulator PadR-like family NPD12_2234 PF11193 NPD12_2234 NPD12_2235 PF03547 NPD12_2235 NPD12_2236 PF00009 Elongation factor Tu GTP binding domain NPD12_2236 PF00679 Elongation factor G C-terminus NPD12_2236 PF03764 Elongation factor G, domain IV NPD12_2237 PF03272 NPD12_2237 NPD12_2237 PF11958 Domain of unknown function (DUF3472) NPD12_2238 PF00122 E1-E2 ATPase NPD12_2238 PF00702 haloacid dehalogenase-like hydrolase NPD12_2239 PF02583 Metal-sensitive transcriptional repressor NPD12_224 PF02542 YgbB family NPD12_2240 PF00936 BMC domain NPD12_2241 PF06130 NPD12_2241 NPD12_2242 PF00171 Aldehyde dehydrogenase family NPD12_2243 PF00936 BMC domain NPD12_2244 PF06249 Ethanolamine utilisation protein EutQ NPD12_2245 PF03319 Ethanolamine utilisation protein EutN/carboxysome NPD12_2246 PF00936 BMC domain NPD12_2247 PF11104 Type IV pilus assembly protein PilM; NPD12_2249 PF10662 Ethanolamine utilisation - propanediol utilisation NPD12_225 PF01522 Polysaccharide deacetylase NPD12_2250 PF00936 BMC domain NPD12_2251 PF04055 Radical SAM superfamily NPD12_2251 PF13187 4Fe-4S dicluster domain NPD12_2251 PF13353 4Fe-4S single cluster domain NPD12_2252 PF01228 Glycine radical NPD12_2252 PF02901 Pyruvate formate lyase NPD12_2253 PF00171 Aldehyde dehydrogenase family NPD12_2254 PF00936 BMC domain NPD12_2255 PF00936 BMC domain NPD12_2258 PF06445 GyrI-like small molecule binding domain NPD12_2258 PF13411 MerR HTH family regulatory protein NPD12_2259 PF00465 Iron-containing alcohol dehydrogenase NPD12_2260 PF01554 MatE NPD12_2261 PF07690 Major Facilitator Superfamily NPD12_2262 PF00392 Bacterial regulatory proteins, gntR family NPD12_2262 PF07729 FCD domain NPD12_2263 PF12802 MarR family NPD12_2263 PF13673 Acetyltransferase (GNAT) domain NPD12_2266 PF09234 Domain of unknown function (DUF1963) NPD12_2267 PF13788 NPD12_2267 NPD12_2268 PF12728 Helix-turn-helix domain NPD12_2269 PF04203 Sortase family NPD12_227 PF07670 Nucleoside recognition NPD12_2270 PF00746 NPD12_2270 NPD12_2270 PF13620 Carboxypeptidase regulatory-like domain NPD12_2271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2272 PF00072 Response regulator receiver domain NPD12_2272 PF00486 Transcriptional regulatory protein, C terminal NPD12_2274 PF01433 Peptidase family M1 NPD12_2275 PF00005 ABC transporter NPD12_2276 PF02687 NPD12_2276 NPD12_2278 PF13443 Cro/C1-type HTH DNA-binding domain NPD12_2279 PF11188 NPD12_2279 NPD12_228 PF07670 Nucleoside recognition NPD12_2280 PF08240 Alcohol dehydrogenase GroES-like domain NPD12_2280 PF16912 NPD12_2280 NPD12_2281 PF01261 Xylose isomerase-like TIM barrel NPD12_2282 PF01761 3-dehydroquinate synthase NPD12_2283 PF02687 NPD12_2283 NPD12_2284 PF00005 ABC transporter NPD12_2285 PF17032 NPD12_2285 NPD12_2286 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_2286 PF00874 PRD domain NPD12_2286 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_2286 PF08279 HTH domain NPD12_2287 PF03611 NPD12_2287 NPD12_2288 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_2289 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPD12_229 PF01554 MatE NPD12_2290 PF00923 Transaldolase NPD12_2293 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2293 PF12464 Maltose acetyltransferase NPD12_2295 PF00854 POT family NPD12_2296 PF13649 Methyltransferase domain NPD12_2297 PF12833 Helix-turn-helix domain NPD12_2297 PF14526 Integron-associated effector binding protein NPD12_2298 PF16107 NPD12_2298 NPD12_2299 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NPD12_2299 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_230 PF03167 Uracil DNA glycosylase superfamily NPD12_2300 PF13411 MerR HTH family regulatory protein NPD12_2301 PF02567 Phenazine biosynthesis-like protein NPD12_2302 PF00155 Aminotransferase class I and II NPD12_2302 PF00392 Bacterial regulatory proteins, gntR family NPD12_2303 PF03403 Platelet-activating factor acetylhydrolase, isoform II NPD12_2304 PF13411 MerR HTH family regulatory protein NPD12_2305 PF12638 NPD12_2305 NPD12_2306 PF01381 Helix-turn-helix NPD12_2307 PF07859 alpha/beta hydrolase fold NPD12_2309 PF13520 Amino acid permease NPD12_231 PF01047 MarR family NPD12_2310 PF00069 Protein kinase domain NPD12_2312 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_2314 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_2314 PF01012 Electron transfer flavoprotein domain NPD12_2315 PF01012 Electron transfer flavoprotein domain NPD12_2316 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_2316 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_2316 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_2317 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_2318 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_2319 PF02515 CoA-transferase family III NPD12_232 PF01588 Putative tRNA binding domain NPD12_232 PF08264 Anticodon-binding domain of tRNA NPD12_232 PF09334 tRNA synthetases class I (M) NPD12_2320 PF13746 4Fe-4S dicluster domain NPD12_2321 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_2322 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_2322 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_2323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2325 PF00881 Nitroreductase family NPD12_2326 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family NPD12_2327 PF00583 Acetyltransferase (GNAT) family NPD12_2328 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_2329 PF02447 NPD12_2329 NPD12_233 PF04286 NPD12_233 NPD12_2330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NPD12_2331 PF07005 Protein of unknown function, DUF1537 NPD12_2331 PF17042 NPD12_2331 NPD12_2332 PF00455 NPD12_2332 NPD12_2332 PF08220 DeoR-like helix-turn-helix domain NPD12_2334 PF02517 CAAX protease self-immunity NPD12_2335 PF03734 L,D-transpeptidase catalytic domain NPD12_2335 PF12229 Putative peptidoglycan binding domain NPD12_2336 PF00440 Bacterial regulatory proteins, tetR family NPD12_2336 PF13305 WHG domain NPD12_2337 PF03358 NADPH-dependent FMN reductase NPD12_2339 PF14323 GxGYxY sequence motif in domain of unknown function NPD12_2339 PF14566 Inositol hexakisphosphate NPD12_2339 PF16216 NPD12_2339 NPD12_234 PF01026 TatD related DNase NPD12_2340 PF00107 Zinc-binding dehydrogenase NPD12_2340 PF08240 Alcohol dehydrogenase GroES-like domain NPD12_2341 PF03063 Prismane/CO dehydrogenase family NPD12_2342 PF01155 Hydrogenase expression/synthesis hypA family NPD12_2343 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPD12_2344 PF02579 Dinitrogenase iron-molybdenum cofactor NPD12_2345 PF00037 4Fe-4S binding domain NPD12_2345 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPD12_2346 PF00037 4Fe-4S binding domain NPD12_2346 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPD12_2347 PF02579 Dinitrogenase iron-molybdenum cofactor NPD12_2349 PF00691 OmpA family NPD12_2349 PF13677 NPD12_2349 NPD12_235 PF03990 NPD12_235 NPD12_235 PF06725 3D domain NPD12_235 PF07501 G5 domain NPD12_2350 PF01618 NPD12_2350 NPD12_2351 PF04122 NPD12_2351 NPD12_2352 PF11611 Domain of unknown function (DUF4352) NPD12_2353 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NPD12_2354 PF03169 NPD12_2354 NPD12_2355 PF01546 Peptidase family M20/M25/M40 NPD12_2355 PF07687 Peptidase dimerisation domain NPD12_2356 PF01212 Beta-eliminating lyase NPD12_2357 PF02595 Glycerate kinase family NPD12_2359 PF00106 short chain dehydrogenase NPD12_236 PF01751 Toprim domain NPD12_236 PF13331 NPD12_236 NPD12_2360 PF12698 ABC-2 family transporter protein NPD12_2361 PF00005 ABC transporter NPD12_2362 PF13673 Acetyltransferase (GNAT) domain NPD12_2363 PF01047 MarR family NPD12_2365 PF10990 NPD12_2365 NPD12_2367 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPD12_2368 PF01266 FAD dependent oxidoreductase NPD12_2368 PF04324 BFD-like [2Fe-2S] binding domain NPD12_2369 PF06445 GyrI-like small molecule binding domain NPD12_2369 PF13411 MerR HTH family regulatory protein NPD12_237 PF00398 Ribosomal RNA adenine dimethylase NPD12_2370 PF13520 Amino acid permease NPD12_2371 PF01661 Macro domain NPD12_2372 PF06961 NPD12_2372 NPD12_2373 PF01047 MarR family NPD12_2375 PF02110 Hydroxyethylthiazole kinase family NPD12_2376 PF09512 NPD12_2376 NPD12_2377 PF13673 Acetyltransferase (GNAT) domain NPD12_2378 PF00753 Metallo-beta-lactamase superfamily NPD12_2379 PF08765 Mor transcription activator family NPD12_2380 PF13500 AAA domain NPD12_2381 PF04055 Radical SAM superfamily NPD12_2381 PF06968 Biotin and Thiamin Synthesis associated domain NPD12_2382 PF02632 BioY family NPD12_2383 PF12978 Domain of Unknown Function with PDB structure (DUF3862) NPD12_2384 PF00557 Metallopeptidase family M24 NPD12_2384 PF01321 Creatinase/Prolidase N-terminal domain NPD12_2384 PF16188 NPD12_2384 NPD12_2384 PF16189 NPD12_2384 NPD12_2385 PF00854 POT family NPD12_2387 PF07659 NPD12_2387 NPD12_2388 PF07485 NPD12_2388 NPD12_2389 PF12788 NPD12_2389 NPD12_2390 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase NPD12_2391 PF03358 NADPH-dependent FMN reductase NPD12_2394 PF12788 NPD12_2394 NPD12_2396 PF09388 Spo0E like sporulation regulatory protein NPD12_2399 PF01641 SelR domain NPD12_24 PF04029 2-phosphosulpholactate phosphatase NPD12_2400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NPD12_2400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NPD12_2401 PF00005 ABC transporter NPD12_2401 PF00664 ABC transporter transmembrane region NPD12_2402 PF00005 ABC transporter NPD12_2402 PF00664 ABC transporter transmembrane region NPD12_2403 PF12833 Helix-turn-helix domain NPD12_2404 PF12730 NPD12_2404 NPD12_2405 PF12730 NPD12_2405 NPD12_2406 PF00005 ABC transporter NPD12_2407 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2408 PF00072 Response regulator receiver domain NPD12_2408 PF00486 Transcriptional regulatory protein, C terminal NPD12_2409 PF00929 Exonuclease NPD12_241 PF16576 NPD12_241 NPD12_2410 PF07876 Stress responsive A/B Barrel Domain NPD12_2411 PF00753 Metallo-beta-lactamase superfamily NPD12_2412 PF01327 Polypeptide deformylase NPD12_2413 PF01381 Helix-turn-helix NPD12_2416 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_2416 PF01844 HNH endonuclease NPD12_2416 PF08388 NPD12_2416 NPD12_2416 PF13655 NPD12_2416 NPD12_2418 PF12978 Domain of Unknown Function with PDB structure (DUF3862) NPD12_242 PF00005 ABC transporter NPD12_2421 PF13231 NPD12_2421 NPD12_2425 PF04542 Sigma-70 region 2 NPD12_2426 PF03845 NPD12_2426 NPD12_2429 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_2429 PF01844 HNH endonuclease NPD12_2429 PF08388 NPD12_2429 NPD12_243 PF02687 NPD12_243 NPD12_243 PF12704 MacB-like periplasmic core domain NPD12_2430 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NPD12_2430 PF13655 NPD12_2430 NPD12_2431 PF01743 Poly A polymerase head domain NPD12_2431 PF12627 Probable RNA and SrmB- binding site of polymerase A NPD12_2431 PF13735 tRNA nucleotidyltransferase domain 2 putative NPD12_2433 PF10127 NPD12_2433 NPD12_2434 PF02517 CAAX protease self-immunity NPD12_2437 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2438 PF00072 Response regulator receiver domain NPD12_2438 PF00486 Transcriptional regulatory protein, C terminal NPD12_244 PF10609 ParA/MinD ATPase like NPD12_2440 PF14242 NPD12_2440 NPD12_2441 PF01695 IstB-like ATP binding protein NPD12_2442 PF01134 Glucose inhibited division protein A NPD12_2443 PF00206 Lyase NPD12_2443 PF10397 Adenylosuccinate lyase C-terminus NPD12_2444 PF04070 NPD12_2444 NPD12_2445 PF00381 PTS HPr component phosphorylation site NPD12_2446 PF00155 Aminotransferase class I and II NPD12_2447 PF00892 EamA-like transporter family NPD12_2448 PF13231 NPD12_2448 NPD12_2449 PF01040 UbiA prenyltransferase family NPD12_245 PF13459 4Fe-4S single cluster domain NPD12_2450 PF04232 Stage V sporulation protein S (SpoVS) NPD12_2451 PF00013 KH domain NPD12_2451 PF01966 HD domain NPD12_2451 PF12072 NPD12_2451 NPD12_2452 PF00154 recA bacterial DNA recombination protein NPD12_2453 PF01066 CDP-alcohol phosphatidyltransferase NPD12_2454 PF00919 Uncharacterized protein family UPF0004 NPD12_2454 PF04055 Radical SAM superfamily NPD12_2455 PF01580 FtsK/SpoIIIE family NPD12_2455 PF09397 Ftsk gamma domain NPD12_2455 PF13491 NPD12_2455 NPD12_2456 PF00574 Clp protease NPD12_2457 PF00696 Amino acid kinase family NPD12_2457 PF13840 ACT domain NPD12_2458 PF05239 PRC-barrel domain NPD12_2459 PF00675 Insulinase (Peptidase family M16) NPD12_2459 PF05193 Peptidase M16 inactive domain NPD12_2460 PF00013 KH domain NPD12_2460 PF00575 S1 RNA binding domain NPD12_2460 PF01138 3' exoribonuclease family, domain 1 NPD12_2460 PF03725 3' exoribonuclease family, domain 2 NPD12_2460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NPD12_2461 PF00312 Ribosomal protein S15 NPD12_2462 PF01687 Riboflavin kinase NPD12_2462 PF06574 FAD synthetase NPD12_2463 PF01509 TruB family pseudouridylate synthase (N terminal domain) NPD12_2463 PF16198 NPD12_2463 NPD12_2464 PF01368 DHH family NPD12_2464 PF02272 DHHA1 domain NPD12_2465 PF02033 Ribosome-binding factor A NPD12_2466 PF00009 Elongation factor Tu GTP binding domain NPD12_2466 PF04760 Translation initiation factor IF-2, N-terminal region NPD12_2466 PF11987 Translation-initiation factor 2 NPD12_2467 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NPD12_2468 PF04296 Protein of unknown function (DUF448) NPD12_2469 PF08529 NusA N-terminal domain NPD12_2469 PF13184 NusA-like KH domain NPD12_247 PF00990 GGDEF domain NPD12_2470 PF02576 Uncharacterised BCR, YhbC family COG0779 NPD12_2470 PF17384 NPD12_2470 NPD12_2471 PF00929 Exonuclease NPD12_2471 PF01336 OB-fold nucleic acid binding domain NPD12_2471 PF02811 PHP domain NPD12_2471 PF07733 Bacterial DNA polymerase III alpha subunit NPD12_2471 PF11490 NPD12_2471 NPD12_2471 PF14579 Helix-hairpin-helix motif NPD12_2472 PF04551 GcpE protein NPD12_2473 PF02163 Peptidase family M50 NPD12_2473 PF13180 PDZ domain NPD12_2474 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NPD12_2474 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal NPD12_2474 PF13288 DXP reductoisomerase C-terminal domain NPD12_2475 PF01594 NPD12_2475 NPD12_2478 PF01148 Cytidylyltransferase family NPD12_2479 PF01255 Putative undecaprenyl diphosphate synthase NPD12_248 PF02308 NPD12_248 NPD12_2480 PF01765 Ribosome recycling factor NPD12_2481 PF00696 Amino acid kinase family NPD12_2482 PF00889 Elongation factor TS NPD12_2483 PF00318 Ribosomal protein S2 NPD12_2484 PF06018 CodY GAF-like domain NPD12_2484 PF08222 CodY helix-turn-helix domain NPD12_2485 PF01131 DNA topoisomerase NPD12_2485 PF01396 NPD12_2485 NPD12_2485 PF01751 Toprim domain NPD12_2486 PF02481 DNA recombination-mediator protein A NPD12_2487 PF01078 Magnesium chelatase, subunit ChlI NPD12_2487 PF13335 NPD12_2487 NPD12_2487 PF13541 Subunit ChlI of Mg-chelatase NPD12_2488 PF02021 Uncharacterised protein family UPF0102 NPD12_2489 PF01351 Ribonuclease HII NPD12_249 PF03477 ATP cone domain NPD12_249 PF13597 Anaerobic ribonucleoside-triphosphate reductase NPD12_2490 PF01926 50S ribosome-binding GTPase NPD12_2491 PF00717 Peptidase S24-like NPD12_2492 PF01245 Ribosomal protein L19 NPD12_2493 PF01746 tRNA (Guanine-1)-methyltransferase NPD12_2494 PF01782 RimM N-terminal domain NPD12_2494 PF05239 PRC-barrel domain NPD12_2495 PF13083 KH domain NPD12_2496 PF00886 Ribosomal protein S16 NPD12_2497 PF00448 SRP54-type protein, GTPase domain NPD12_2497 PF02881 SRP54-type protein, helical bundle domain NPD12_2497 PF02978 Signal peptide binding domain NPD12_2498 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NPD12_2499 PF00448 SRP54-type protein, GTPase domain NPD12_2499 PF02881 SRP54-type protein, helical bundle domain NPD12_25 PF04055 Radical SAM superfamily NPD12_25 PF16199 NPD12_25 NPD12_250 PF04055 Radical SAM superfamily NPD12_250 PF13353 4Fe-4S single cluster domain NPD12_2500 PF02463 RecF/RecN/SMC N terminal domain NPD12_2500 PF06470 SMC proteins Flexible Hinge Domain NPD12_2502 PF04055 Radical SAM superfamily NPD12_2502 PF13394 4Fe-4S single cluster domain NPD12_2502 PF16199 NPD12_2502 NPD12_2503 PF00035 Double-stranded RNA binding motif NPD12_2503 PF14622 Ribonuclease-III-like NPD12_2504 PF00550 Phosphopantetheine attachment site NPD12_2505 PF02504 Fatty acid synthesis protein NPD12_2506 PF01783 Ribosomal L32p protein family NPD12_2507 PF02620 NPD12_2507 NPD12_2508 PF00871 Acetokinase family NPD12_2509 PF01515 Phosphate acetyl/butaryl transferase NPD12_251 PF06304 Protein of unknown function (DUF1048) NPD12_2510 PF01925 NPD12_2510 NPD12_2512 PF07355 NPD12_2512 NPD12_2514 PF09338 NPD12_2514 NPD12_2515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2515 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2516 PF01925 NPD12_2516 NPD12_2517 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2517 PF00672 HAMP domain NPD12_2517 PF02743 Cache domain NPD12_252 PF03551 Transcriptional regulator PadR-like family NPD12_2520 PF13520 Amino acid permease NPD12_2521 PF01925 NPD12_2521 NPD12_2522 PF05544 Proline racemase NPD12_2523 PF09338 NPD12_2523 NPD12_2524 PF09338 NPD12_2524 NPD12_2527 PF07355 NPD12_2527 NPD12_2529 PF09338 NPD12_2529 NPD12_253 PF13483 Beta-lactamase superfamily domain NPD12_2530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2530 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2532 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2532 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2533 PF03773 NPD12_2533 NPD12_2536 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_2536 PF13375 RnfC Barrel sandwich hybrid domain NPD12_2537 PF00158 Sigma-54 interaction domain NPD12_2537 PF00571 CBS domain NPD12_2537 PF02954 Bacterial regulatory protein, Fis family NPD12_2537 PF13426 PAS domain NPD12_2538 PF05636 HIGH Nucleotidyl Transferase NPD12_254 PF00133 tRNA synthetases class I (I, L, M and V) NPD12_254 PF08264 Anticodon-binding domain of tRNA NPD12_2541 PF01467 Cytidylyltransferase NPD12_2542 PF03602 Conserved hypothetical protein 95 NPD12_2543 PF00270 DEAD/DEAH box helicase NPD12_2543 PF00271 Helicase conserved C-terminal domain NPD12_2543 PF17191 NPD12_2543 NPD12_2544 PF02734 DAK2 domain NPD12_2544 PF13684 Dihydroxyacetone kinase family NPD12_2545 PF03780 NPD12_2545 NPD12_2546 PF00830 Ribosomal L28 family NPD12_2548 PF04263 Thiamin pyrophosphokinase, catalytic domain NPD12_2548 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain NPD12_2549 PF00834 Ribulose-phosphate 3 epimerase family NPD12_255 PF00356 Bacterial regulatory proteins, lacI family NPD12_255 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NPD12_2550 PF03193 Protein of unknown function, DUF258 NPD12_2550 PF16745 NPD12_2550 NPD12_2551 PF00069 Protein kinase domain NPD12_2551 PF03793 PASTA domain NPD12_2552 PF13672 Protein phosphatase 2C NPD12_2553 PF04055 Radical SAM superfamily NPD12_2553 PF13394 4Fe-4S single cluster domain NPD12_2554 PF01029 NusB family NPD12_2554 PF01189 NOL1/NOP2/sun family NPD12_2555 PF04298 NPD12_2555 NPD12_2556 PF00551 Formyl transferase NPD12_2556 PF02911 Formyl transferase, C-terminal domain NPD12_2557 PF01327 Polypeptide deformylase NPD12_2558 PF00270 DEAD/DEAH box helicase NPD12_2558 PF00271 Helicase conserved C-terminal domain NPD12_2559 PF02441 Flavoprotein NPD12_2559 PF04127 DNA / pantothenate metabolism flavoprotein NPD12_256 PF13086 AAA domain NPD12_256 PF13087 AAA domain NPD12_2560 PF01192 RNA polymerase Rpb6 NPD12_2561 PF00625 Guanylate kinase NPD12_2562 PF04025 NPD12_2562 NPD12_2563 PF03755 NPD12_2563 NPD12_2563 PF08340 NPD12_2563 NPD12_2564 PF00710 Asparaginase NPD12_2565 PF09547 NPD12_2565 NPD12_2566 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NPD12_2566 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NPD12_2567 PF01926 50S ribosome-binding GTPase NPD12_2567 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NPD12_2568 PF04459 NPD12_2568 NPD12_2569 PF01895 PhoU domain NPD12_257 PF00483 Nucleotidyl transferase NPD12_2570 PF00005 ABC transporter NPD12_2571 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2572 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_2573 PF12849 PBP superfamily domain NPD12_2574 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2574 PF00672 HAMP domain NPD12_2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2574 PF13188 PAS domain NPD12_2574 PF16736 NPD12_2574 NPD12_2575 PF00072 Response regulator receiver domain NPD12_2575 PF00486 Transcriptional regulatory protein, C terminal NPD12_2576 PF02578 Multi-copper polyphenol oxidoreductase laccase NPD12_2577 PF03477 ATP cone domain NPD12_2578 PF05239 PRC-barrel domain NPD12_2579 PF04539 Sigma-70 region 3 NPD12_2579 PF04542 Sigma-70 region 2 NPD12_2579 PF04545 Sigma-70, region 4 NPD12_258 PF01969 Protein of unknown function DUF111 NPD12_2580 PF04542 Sigma-70 region 2 NPD12_2580 PF04545 Sigma-70, region 4 NPD12_2581 PF03419 NPD12_2581 NPD12_2582 PF00091 Tubulin/FtsZ family, GTPase domain NPD12_2582 PF12327 FtsZ family, C-terminal domain NPD12_2583 PF02491 SHS2 domain inserted in FTSA NPD12_2583 PF14450 Cell division protein FtsA NPD12_2584 PF13641 Glycosyltransferase like family 2 NPD12_2586 PF00437 Type II/IV secretion system protein NPD12_2587 PF01488 Shikimate / quinate 5-dehydrogenase NPD12_2587 PF08501 Shikimate dehydrogenase substrate binding domain NPD12_2588 PF04542 Sigma-70 region 2 NPD12_2588 PF04545 Sigma-70, region 4 NPD12_2589 PF09388 Spo0E like sporulation regulatory protein NPD12_259 PF02540 NAD synthase NPD12_2593 PF09557 NPD12_2593 NPD12_2594 PF09557 NPD12_2594 NPD12_2597 PF12684 PDDEXK-like domain of unknown function (DUF3799) NPD12_2598 PF03837 NPD12_2598 NPD12_2599 PF00905 Penicillin binding protein transpeptidase domain NPD12_260 PF00731 AIR carboxylase NPD12_2600 PF00485 Phosphoribulokinase / Uridine kinase family NPD12_2601 PF01136 NPD12_2601 NPD12_2601 PF16325 NPD12_2601 NPD12_2602 PF01596 O-methyltransferase NPD12_2603 PF02618 YceG-like family NPD12_2604 PF00009 Elongation factor Tu GTP binding domain NPD12_2604 PF00679 Elongation factor G C-terminus NPD12_2604 PF03144 Elongation factor Tu domain 2 NPD12_2605 PF00753 Metallo-beta-lactamase superfamily NPD12_2605 PF07521 RNA-metabolising metallo-beta-lactamase NPD12_2606 PF01475 Ferric uptake regulator family NPD12_2607 PF06949 NPD12_2607 NPD12_2608 PF03652 Uncharacterised protein family (UPF0081) NPD12_2609 PF06135 NPD12_2609 NPD12_261 PF04055 Radical SAM superfamily NPD12_261 PF13353 4Fe-4S single cluster domain NPD12_2610 PF01411 tRNA synthetases class II (A) NPD12_2610 PF02272 DHHA1 domain NPD12_2610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPD12_2611 PF01594 NPD12_2611 NPD12_2612 PF05239 PRC-barrel domain NPD12_2613 PF01592 NifU-like N terminal domain NPD12_2614 PF00266 Aminotransferase class-V NPD12_2615 PF02082 Transcriptional regulator NPD12_2616 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_2616 PF12002 MgsA AAA+ ATPase C terminal NPD12_2616 PF16193 NPD12_2616 NPD12_2617 PF02811 PHP domain NPD12_2618 PF03547 NPD12_2618 NPD12_2619 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_262 PF13416 Bacterial extracellular solute-binding protein NPD12_2620 PF01206 Sulfurtransferase TusA NPD12_2620 PF02635 DsrE/DsrF-like family NPD12_2621 PF02423 Ornithine cyclodeaminase/mu-crystallin family NPD12_2622 PF01235 NPD12_2622 NPD12_2623 PF01235 NPD12_2623 NPD12_2624 PF14344 NPD12_2624 NPD12_2625 PF07833 Copper amine oxidase N-terminal domain NPD12_2626 PF02769 AIR synthase related protein, C-terminal domain NPD12_2626 PF13507 CobB/CobQ-like glutamine amidotransferase domain NPD12_2627 PF01554 MatE NPD12_2628 PF00391 PEP-utilising enzyme, mobile domain NPD12_2628 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NPD12_2629 PF00550 Phosphopantetheine attachment site NPD12_263 PF00534 Glycosyl transferases group 1 NPD12_263 PF13439 Glycosyltransferase Family 4 NPD12_2630 PF00501 AMP-binding enzyme NPD12_2631 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPD12_2631 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_2632 PF00975 Thioesterase domain NPD12_2633 PF00501 AMP-binding enzyme NPD12_2633 PF00550 Phosphopantetheine attachment site NPD12_2634 PF13673 Acetyltransferase (GNAT) domain NPD12_2636 PF01507 Phosphoadenosine phosphosulfate reductase family NPD12_2637 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_2638 PF01648 4'-phosphopantetheinyl transferase superfamily NPD12_2639 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPD12_2639 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPD12_264 PF01636 Phosphotransferase enzyme family NPD12_2640 PF00696 Amino acid kinase family NPD12_2641 PF00464 Serine hydroxymethyltransferase NPD12_2642 PF06738 NPD12_2642 NPD12_2643 PF12821 NPD12_2643 NPD12_2644 PF02583 Metal-sensitive transcriptional repressor NPD12_2645 PF08282 haloacid dehalogenase-like hydrolase NPD12_2646 PF16224 NPD12_2646 NPD12_2647 PF01467 Cytidylyltransferase NPD12_2648 PF00056 lactate/malate dehydrogenase, NAD binding domain NPD12_2649 PF03358 NADPH-dependent FMN reductase NPD12_2651 PF02127 Aminopeptidase I zinc metalloprotease (M18) NPD12_2652 PF01544 CorA-like Mg2+ transporter protein NPD12_2653 PF01812 5-formyltetrahydrofolate cyclo-ligase family NPD12_2654 PF02603 HPr Serine kinase N terminus NPD12_2654 PF07475 HPr Serine kinase C-terminal domain NPD12_2655 PF05979 Bacterial protein of unknown function (DUF896) NPD12_2656 PF09335 NPD12_2656 NPD12_2657 PF09335 NPD12_2657 NPD12_2658 PF02754 NPD12_2658 NPD12_2658 PF13183 4Fe-4S dicluster domain NPD12_2659 PF01636 Phosphotransferase enzyme family NPD12_2660 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) NPD12_2661 PF00535 Glycosyl transferase family 2 NPD12_2662 PF00581 Rhodanese-like domain NPD12_2663 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NPD12_2665 PF00258 Flavodoxin NPD12_2665 PF00753 Metallo-beta-lactamase superfamily NPD12_2669 PF01156 Inosine-uridine preferring nucleoside hydrolase NPD12_267 PF01633 Choline/ethanolamine kinase NPD12_2670 PF01327 Polypeptide deformylase NPD12_2671 PF01813 ATP synthase subunit D NPD12_2672 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_2672 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_2673 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_2673 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_2673 PF16886 NPD12_2673 NPD12_2674 PF01990 ATP synthase (F/14-kDa) subunit NPD12_2675 PF01992 ATP synthase (C/AC39) subunit NPD12_2676 PF01991 ATP synthase (E/31 kDa) subunit NPD12_2677 PF00137 ATP synthase subunit C NPD12_2678 PF01496 V-type ATPase 116kDa subunit family NPD12_268 PF00534 Glycosyl transferases group 1 NPD12_268 PF13439 Glycosyltransferase Family 4 NPD12_2680 PF02310 B12 binding domain NPD12_2680 PF04055 Radical SAM superfamily NPD12_2680 PF13311 NPD12_2680 NPD12_2682 PF00882 Zinc dependent phospholipase C NPD12_2683 PF07995 Glucose / Sorbosone dehydrogenase NPD12_2684 PF00122 E1-E2 ATPase NPD12_2684 PF00689 Cation transporting ATPase, C-terminus NPD12_2684 PF00690 Cation transporter/ATPase, N-terminus NPD12_2684 PF00702 haloacid dehalogenase-like hydrolase NPD12_2685 PF00571 CBS domain NPD12_2685 PF01368 DHH family NPD12_2685 PF02833 DHHA2 domain NPD12_2685 PF07085 DRTGG domain NPD12_2687 PF00460 Flagella basal body rod protein NPD12_2687 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2688 PF00460 Flagella basal body rod protein NPD12_2688 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_269 PF01633 Choline/ethanolamine kinase NPD12_2691 PF04539 Sigma-70 region 3 NPD12_2691 PF04542 Sigma-70 region 2 NPD12_2691 PF04545 Sigma-70, region 4 NPD12_2692 PF07238 PilZ domain NPD12_2692 PF12945 Flagellar protein YcgR NPD12_2693 PF10609 ParA/MinD ATPase like NPD12_2694 PF00448 SRP54-type protein, GTPase domain NPD12_2695 PF00771 FHIPEP family NPD12_2696 PF01311 NPD12_2696 NPD12_2696 PF01312 FlhB HrpN YscU SpaS Family NPD12_2697 PF01313 NPD12_2697 NPD12_2698 PF00813 NPD12_2698 NPD12_2699 PF04347 NPD12_2699 NPD12_270 PF05582 NPD12_270 NPD12_2700 PF03748 NPD12_2700 NPD12_2701 PF00691 OmpA family NPD12_2701 PF13677 NPD12_2701 NPD12_2702 PF01618 NPD12_2702 NPD12_2703 PF06289 NPD12_2703 NPD12_2704 PF00460 Flagella basal body rod protein NPD12_2704 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2705 PF12611 NPD12_2705 NPD12_2706 PF03963 NPD12_2706 NPD12_2707 PF02120 Flagellar hook-length control protein FliK NPD12_2708 PF02050 Flagellar FliJ protein NPD12_2709 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_2709 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_271 PF06257 Protein of unknown function (DUF1021) NPD12_2710 PF02108 NPD12_2710 NPD12_2711 PF01706 FliG C-terminal domain NPD12_2711 PF14841 FliG middle domain NPD12_2711 PF14842 FliG N-terminal domain NPD12_2712 PF01514 Secretory protein of YscJ/FliF family NPD12_2712 PF08345 NPD12_2712 NPD12_2713 PF02049 NPD12_2713 NPD12_2714 PF00460 Flagella basal body rod protein NPD12_2714 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2715 PF00460 Flagella basal body rod protein NPD12_2716 PF00669 Bacterial flagellin N-terminal helical region NPD12_2716 PF00700 Bacterial flagellin C-terminal helical region NPD12_2718 PF00206 Lyase NPD12_2718 PF14698 Argininosuccinate lyase C-terminal NPD12_2719 PF00764 Arginosuccinate synthase NPD12_272 PF01476 LysM domain NPD12_272 PF12673 NPD12_272 NPD12_2722 PF13091 PLD-like domain NPD12_2722 PF13396 NPD12_2722 NPD12_2723 PF06081 NPD12_2723 NPD12_2725 PF04892 NPD12_2725 NPD12_2726 PF13440 NPD12_2726 NPD12_2727 PF16363 NPD12_2727 NPD12_2728 PF03102 NeuB family NPD12_2728 PF08666 SAF domain NPD12_2729 PF02348 Cytidylyltransferase NPD12_2729 PF04101 Glycosyltransferase family 28 C-terminal domain NPD12_273 PF03575 Peptidase family S51 NPD12_2730 PF04932 NPD12_2730 NPD12_2732 PF14393 NPD12_2732 NPD12_2733 PF03275 UDP-galactopyranose mutase NPD12_2733 PF13450 NAD(P)-binding Rossmann-like domain NPD12_2734 PF02397 NPD12_2734 NPD12_2735 PF10609 ParA/MinD ATPase like NPD12_2737 PF02706 Chain length determinant protein NPD12_2737 PF13807 NPD12_2737 NPD12_2738 PF03816 Cell envelope-related transcriptional attenuator domain NPD12_2739 PF14070 NPD12_2739 NPD12_274 PF02875 Mur ligase family, glutamate ligase domain NPD12_274 PF08245 Mur ligase middle domain NPD12_274 PF08443 RimK-like ATP-grasp domain NPD12_2740 PF09388 Spo0E like sporulation regulatory protein NPD12_2741 PF09388 Spo0E like sporulation regulatory protein NPD12_2742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2743 PF00669 Bacterial flagellin N-terminal helical region NPD12_2743 PF00700 Bacterial flagellin C-terminal helical region NPD12_2744 PF04101 Glycosyltransferase family 28 C-terminal domain NPD12_2749 PF01973 NPD12_2749 NPD12_275 PF00288 GHMP kinases N terminal domain NPD12_275 PF08544 GHMP kinases C terminal NPD12_2752 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPD12_2753 PF16363 NPD12_2753 NPD12_2754 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_2755 PF02585 GlcNAc-PI de-N-acetylase NPD12_2756 PF02348 Cytidylyltransferase NPD12_2757 PF15632 NPD12_2757 NPD12_2758 PF03102 NeuB family NPD12_2758 PF08666 SAF domain NPD12_2759 PF13649 Methyltransferase domain NPD12_2760 PF02350 UDP-N-acetylglucosamine 2-epimerase NPD12_2761 PF00483 Nucleotidyl transferase NPD12_2761 PF00571 CBS domain NPD12_2763 PF01973 NPD12_2763 NPD12_2764 PF00669 Bacterial flagellin N-terminal helical region NPD12_2764 PF00700 Bacterial flagellin C-terminal helical region NPD12_2766 PF02465 NPD12_2766 NPD12_2766 PF07195 NPD12_2766 NPD12_2767 PF02561 Flagellar protein FliS NPD12_2769 PF03646 FlaG protein NPD12_277 PF03323 NPD12_277 NPD12_2770 PF02599 Global regulator protein family NPD12_2771 PF02623 FliW protein NPD12_2772 PF00669 Bacterial flagellin N-terminal helical region NPD12_2772 PF00700 Bacterial flagellin C-terminal helical region NPD12_2773 PF00460 Flagella basal body rod protein NPD12_2773 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPD12_2774 PF05130 FlgN protein NPD12_2775 PF04316 Anti-sigma-28 factor, FlgM NPD12_2776 PF01052 Surface presentation of antigens (SPOA) NPD12_2776 PF04509 CheC-like family NPD12_2777 PF01052 Surface presentation of antigens (SPOA) NPD12_2777 PF02154 Flagellar motor switch protein FliM NPD12_2778 PF01584 CheW-like domain NPD12_2779 PF00072 Response regulator receiver domain NPD12_278 PF03845 NPD12_278 NPD12_2780 PF04509 CheC-like family NPD12_2781 PF01584 CheW-like domain NPD12_2781 PF01627 Hpt domain NPD12_2781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2781 PF02895 Signal transducing histidine kinase, homodimeric domain NPD12_2781 PF07194 P2 response regulator binding domain NPD12_2782 PF01739 CheR methyltransferase, SAM binding domain NPD12_2782 PF03705 CheR methyltransferase, all-alpha domain NPD12_2783 PF00072 Response regulator receiver domain NPD12_2783 PF01339 CheB methylesterase NPD12_2784 PF03975 CheD chemotactic sensory transduction NPD12_2785 PF01584 CheW-like domain NPD12_2786 PF03961 NPD12_2786 NPD12_2786 PF14804 Jag N-terminus NPD12_2787 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_2787 PF00367 phosphotransferase system, EIIB NPD12_2787 PF02378 Phosphotransferase system, EIIC NPD12_2788 PF00874 PRD domain NPD12_2788 PF03123 CAT RNA binding domain NPD12_2789 PF01063 Aminotransferase class IV NPD12_279 PF05504 Spore germination B3/ GerAC like, C-terminal NPD12_2790 PF12710 haloacid dehalogenase-like hydrolase NPD12_2791 PF06949 NPD12_2791 NPD12_2793 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NPD12_2793 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NPD12_2793 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPD12_2793 PF10371 Domain of unknown function NPD12_2793 PF12838 4Fe-4S dicluster domain NPD12_2793 PF17147 NPD12_2793 NPD12_2794 PF03033 Glycosyltransferase family 28 N-terminal domain NPD12_2794 PF04101 Glycosyltransferase family 28 C-terminal domain NPD12_2795 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_2796 PF00512 His Kinase A (phospho-acceptor) domain NPD12_2796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2796 PF13188 PAS domain NPD12_2797 PF01368 DHH family NPD12_2797 PF02272 DHHA1 domain NPD12_2798 PF01261 Xylose isomerase-like TIM barrel NPD12_2799 PF13905 Thioredoxin-like NPD12_28 PF04055 Radical SAM superfamily NPD12_28 PF13353 4Fe-4S single cluster domain NPD12_280 PF09551 NPD12_280 NPD12_2800 PF00675 Insulinase (Peptidase family M16) NPD12_2800 PF05193 Peptidase M16 inactive domain NPD12_2801 PF04138 NPD12_2801 NPD12_2802 PF01965 DJ-1/PfpI family NPD12_2803 PF04309 Glycerol-3-phosphate responsive antiterminator NPD12_2804 PF00521 DNA gyrase/topoisomerase IV, subunit A NPD12_2804 PF03989 DNA gyrase C-terminal domain, beta-propeller NPD12_2805 PF00204 DNA gyrase B NPD12_2805 PF00986 DNA gyrase B subunit, carboxyl terminus NPD12_2805 PF01751 Toprim domain NPD12_2805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_2806 PF09682 NPD12_2806 NPD12_2807 PF00999 Sodium/hydrogen exchanger family NPD12_2809 PF02344 Myc leucine zipper domain NPD12_281 PF04101 Glycosyltransferase family 28 C-terminal domain NPD12_281 PF06925 NPD12_281 NPD12_2810 PF01522 Polysaccharide deacetylase NPD12_2811 PF16472 NPD12_2811 NPD12_2812 PF01370 NAD dependent epimerase/dehydratase family NPD12_2813 PF00258 Flavodoxin NPD12_2814 PF01554 MatE NPD12_2815 PF01229 Glycosyl hydrolases family 39 NPD12_2815 PF07883 Cupin domain NPD12_2815 PF12833 Helix-turn-helix domain NPD12_2816 PF02016 LD-carboxypeptidase NPD12_2817 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPD12_2817 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPD12_2818 PF00230 Major intrinsic protein NPD12_2819 PF01906 Putative heavy-metal-binding NPD12_282 PF03413 Peptidase propeptide and YPEB domain NPD12_282 PF14620 NPD12_282 NPD12_2820 PF04892 NPD12_2820 NPD12_2822 PF00005 ABC transporter NPD12_2823 PF00392 Bacterial regulatory proteins, gntR family NPD12_2824 PF04892 NPD12_2824 NPD12_2825 PF03063 Prismane/CO dehydrogenase family NPD12_2827 PF02073 Thermophilic metalloprotease (M29) NPD12_2828 PF05504 Spore germination B3/ GerAC like, C-terminal NPD12_2829 PF03845 NPD12_2829 NPD12_283 PF02568 Thiamine biosynthesis protein (ThiI) NPD12_283 PF05670 NPD12_283 NPD12_2830 PF03323 NPD12_2830 NPD12_2832 PF01522 Polysaccharide deacetylase NPD12_2833 PF00270 DEAD/DEAH box helicase NPD12_2833 PF00271 Helicase conserved C-terminal domain NPD12_2833 PF03880 DbpA RNA binding domain NPD12_2834 PF13451 NPD12_2834 NPD12_2836 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2836 PF17202 NPD12_2836 NPD12_2837 PF00582 Universal stress protein family NPD12_2838 PF12801 NPD12_2838 NPD12_2838 PF13187 4Fe-4S dicluster domain NPD12_2839 PF04960 Glutaminase NPD12_284 PF09148 Domain of unknown function (DUF1934) NPD12_2840 PF06725 3D domain NPD12_2841 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2841 PF02743 Cache domain NPD12_2842 PF05857 NPD12_2842 NPD12_2843 PF00268 Ribonucleotide reductase, small chain NPD12_2844 PF00317 Ribonucleotide reductase, all-alpha domain NPD12_2844 PF02867 Ribonucleotide reductase, barrel domain NPD12_2844 PF03477 ATP cone domain NPD12_2845 PF12671 NPD12_2845 NPD12_2846 PF13539 D-alanyl-D-alanine carboxypeptidase NPD12_2847 PF00817 impB/mucB/samB family NPD12_2847 PF11798 IMS family HHH motif NPD12_2847 PF11799 impB/mucB/samB family C-terminal domain NPD12_2848 PF01180 Dihydroorotate dehydrogenase NPD12_2848 PF14697 4Fe-4S dicluster domain NPD12_2849 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_2849 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_2850 PF00156 Phosphoribosyl transferase domain NPD12_2851 PF02698 DUF218 domain NPD12_2852 PF01047 MarR family NPD12_2853 PF00005 ABC transporter NPD12_2854 PF13563 2'-5' RNA ligase superfamily NPD12_2855 PF16760 NPD12_2855 NPD12_2856 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_2856 PF00672 HAMP domain NPD12_2856 PF12729 NPD12_2856 NPD12_2857 PF00293 NUDIX domain NPD12_2858 PF01475 Ferric uptake regulator family NPD12_2859 PF08329 Chitinase A, N-terminal domain NPD12_286 PF00117 Glutamine amidotransferase class-I NPD12_286 PF06418 CTP synthase N-terminus NPD12_2860 PF00704 Glycosyl hydrolases family 18 NPD12_2860 PF08329 Chitinase A, N-terminal domain NPD12_2861 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NPD12_2862 PF01979 Amidohydrolase family NPD12_2863 PF00392 Bacterial regulatory proteins, gntR family NPD12_2863 PF07702 UTRA domain NPD12_2864 PF00874 PRD domain NPD12_2864 PF03123 CAT RNA binding domain NPD12_2865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_2866 PF00367 phosphotransferase system, EIIB NPD12_2866 PF02378 Phosphotransferase system, EIIC NPD12_2867 PF01554 MatE NPD12_2868 PF01458 Uncharacterized protein family (UPF0051) NPD12_2869 PF00005 ABC transporter NPD12_2870 PF00440 Bacterial regulatory proteins, tetR family NPD12_2871 PF01475 Ferric uptake regulator family NPD12_2872 PF01554 MatE NPD12_2873 PF00258 Flavodoxin NPD12_2873 PF00753 Metallo-beta-lactamase superfamily NPD12_2874 PF00301 Rubredoxin NPD12_2874 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_2874 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_2874 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_2874 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_2875 PF00665 Integrase core domain NPD12_2875 PF13276 NPD12_2875 NPD12_2876 PF13518 Helix-turn-helix domain NPD12_2877 PF03830 PTS system sorbose subfamily IIB component NPD12_2878 PF03830 PTS system sorbose subfamily IIB component NPD12_2879 PF03609 NPD12_2879 NPD12_288 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_288 PF07497 Rho termination factor, RNA-binding domain NPD12_288 PF07498 Rho termination factor, N-terminal domain NPD12_2880 PF03613 NPD12_2880 NPD12_2881 PF06115 NPD12_2881 NPD12_2882 PF01144 Coenzyme A transferase NPD12_2883 PF01144 Coenzyme A transferase NPD12_2884 PF12804 MobA-like NTP transferase domain NPD12_2885 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_2885 PF01799 [2Fe-2S] binding domain NPD12_2886 PF00941 FAD binding domain in molybdopterin dehydrogenase NPD12_2887 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_2887 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_2888 PF00232 Glycosyl hydrolase family 1 NPD12_2889 PF00232 Glycosyl hydrolase family 1 NPD12_289 PF01197 Ribosomal protein L31 NPD12_2890 PF00999 Sodium/hydrogen exchanger family NPD12_2891 PF13419 Haloacid dehalogenase-like hydrolase NPD12_2892 PF04994 TfoX C-terminal domain NPD12_2894 PF01510 N-acetylmuramoyl-L-alanine amidase NPD12_2896 PF07872 NPD12_2896 NPD12_2897 PF04055 Radical SAM superfamily NPD12_2898 PF00005 ABC transporter NPD12_29 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_29 PF07700 Heme NO binding NPD12_290 PF00265 Thymidine kinase NPD12_2901 PF12642 Conjugative transposon protein TcpC NPD12_2903 PF01841 Transglutaminase-like superfamily NPD12_2904 PF12833 Helix-turn-helix domain NPD12_2906 PF13302 Acetyltransferase (GNAT) domain NPD12_2907 PF00440 Bacterial regulatory proteins, tetR family NPD12_291 PF07136 NPD12_291 NPD12_2911 PF04055 Radical SAM superfamily NPD12_2911 PF13353 4Fe-4S single cluster domain NPD12_2913 PF00005 ABC transporter NPD12_2913 PF00664 ABC transporter transmembrane region NPD12_2914 PF01938 TRAM domain NPD12_2914 PF05958 tRNA (Uracil-5-)-methyltransferase NPD12_2916 PF00884 Sulfatase NPD12_2917 PF01925 NPD12_2917 NPD12_2918 PF00885 6,7-dimethyl-8-ribityllumazine synthase NPD12_2919 PF00925 GTP cyclohydrolase II NPD12_2919 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NPD12_292 PF05175 Methyltransferase small domain NPD12_2920 PF00677 Lumazine binding domain NPD12_2921 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_2921 PF01872 RibD C-terminal domain NPD12_2922 PF01546 Peptidase family M20/M25/M40 NPD12_2922 PF07687 Peptidase dimerisation domain NPD12_2923 PF00753 Metallo-beta-lactamase superfamily NPD12_2924 PF00122 E1-E2 ATPase NPD12_2924 PF00689 Cation transporting ATPase, C-terminus NPD12_2924 PF00690 Cation transporter/ATPase, N-terminus NPD12_2924 PF00702 haloacid dehalogenase-like hydrolase NPD12_2926 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NPD12_2926 PF02843 Phosphoribosylglycinamide synthetase, C domain NPD12_2926 PF02844 Phosphoribosylglycinamide synthetase, N domain NPD12_2927 PF01808 AICARFT/IMPCHase bienzyme NPD12_2927 PF02142 MGS-like domain NPD12_2928 PF00551 Formyl transferase NPD12_2929 PF00586 AIR synthase related protein, N-terminal domain NPD12_2929 PF02769 AIR synthase related protein, C-terminal domain NPD12_293 PF00472 RF-1 domain NPD12_293 PF03462 PCRF domain NPD12_2930 PF00156 Phosphoribosyl transferase domain NPD12_2930 PF13537 Glutamine amidotransferase domain NPD12_2931 PF01259 SAICAR synthetase NPD12_2932 PF00731 AIR carboxylase NPD12_2933 PF00111 2Fe-2S iron-sulfur cluster binding domain NPD12_2933 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_2933 PF01799 [2Fe-2S] binding domain NPD12_2933 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPD12_2934 PF01546 Peptidase family M20/M25/M40 NPD12_2934 PF07687 Peptidase dimerisation domain NPD12_2935 PF01979 Amidohydrolase family NPD12_2936 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_2936 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_2937 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPD12_2937 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPD12_2938 PF01979 Amidohydrolase family NPD12_2939 PF00860 Permease family NPD12_2940 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_2941 PF00158 Sigma-54 interaction domain NPD12_2941 PF02954 Bacterial regulatory protein, Fis family NPD12_2941 PF15714 NPD12_2941 NPD12_2943 PF12804 MobA-like NTP transferase domain NPD12_2945 PF02625 XdhC and CoxI family NPD12_2945 PF13478 XdhC Rossmann domain NPD12_2946 PF03266 NTPase NPD12_2947 PF01032 FecCD transport family NPD12_2948 PF00005 ABC transporter NPD12_2949 PF01497 Periplasmic binding protein NPD12_295 PF02535 NPD12_295 NPD12_2951 PF13472 GDSL-like Lipase/Acylhydrolase family NPD12_2952 PF02698 DUF218 domain NPD12_2954 PF00860 Permease family NPD12_2955 PF01235 NPD12_2955 NPD12_2956 PF13245 Part of AAA domain NPD12_2957 PF03054 tRNA methyl transferase NPD12_2958 PF05257 CHAP domain NPD12_2959 PF01546 Peptidase family M20/M25/M40 NPD12_296 PF01300 Telomere recombination NPD12_296 PF03481 Putative GTP-binding controlling metal-binding NPD12_2960 PF13185 GAF domain NPD12_2961 PF00571 CBS domain NPD12_2961 PF01595 NPD12_2961 NPD12_2961 PF03471 Transporter associated domain NPD12_2962 PF01910 Domain of unknown function DUF77 NPD12_2963 PF01964 ThiC family NPD12_2964 PF00156 Phosphoribosyl transferase domain NPD12_2964 PF13537 Glutamine amidotransferase domain NPD12_2965 PF04456 Protein of unknown function (DUF503) NPD12_2966 PF13346 NPD12_2966 NPD12_2967 PF13346 NPD12_2967 NPD12_2968 PF00005 ABC transporter NPD12_2969 PF00392 Bacterial regulatory proteins, gntR family NPD12_297 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPD12_2970 PF17099 NPD12_2970 NPD12_2971 PF12837 4Fe-4S binding domain NPD12_2972 PF00027 Cyclic nucleotide-binding domain NPD12_2972 PF13545 Crp-like helix-turn-helix domain NPD12_2973 PF07486 Cell Wall Hydrolase NPD12_2975 PF07883 Cupin domain NPD12_2976 PF12698 ABC-2 family transporter protein NPD12_2977 PF03009 Glycerophosphoryl diester phosphodiesterase family NPD12_2979 PF00282 Pyridoxal-dependent decarboxylase conserved domain NPD12_298 PF02502 Ribose/Galactose Isomerase NPD12_2980 PF00571 CBS domain NPD12_2980 PF01595 NPD12_2980 NPD12_2980 PF03471 Transporter associated domain NPD12_2982 PF02591 Putative zinc ribbon domain NPD12_2983 PF01784 NIF3 (NGG1p interacting factor 3) NPD12_2984 PF04816 Family of unknown function (DUF633) NPD12_2985 PF10882 NPD12_2985 NPD12_2986 PF00140 Sigma-70 factor, region 1 NPD12_2986 PF03979 Sigma-70 factor, region 1 NPD12_2986 PF04539 Sigma-70 region 3 NPD12_2986 PF04542 Sigma-70 region 2 NPD12_2986 PF04545 Sigma-70, region 4 NPD12_2987 PF01807 CHC2 zinc finger NPD12_2987 PF08275 DNA primase catalytic core, N-terminal domain NPD12_2987 PF10410 DnaB-helicase binding domain of primase NPD12_2987 PF13155 Toprim-like NPD12_2988 PF01966 HD domain NPD12_2988 PF13286 Phosphohydrolase-associated domain NPD12_2989 PF01636 Phosphotransferase enzyme family NPD12_299 PF14681 Uracil phosphoribosyltransferase NPD12_2990 PF00391 PEP-utilising enzyme, mobile domain NPD12_2990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NPD12_2990 PF02896 PEP-utilising enzyme, TIM barrel domain NPD12_2991 PF00571 CBS domain NPD12_2991 PF08279 HTH domain NPD12_2992 PF14242 NPD12_2992 NPD12_2993 PF02565 Recombination protein O C terminal NPD12_2994 PF01926 50S ribosome-binding GTPase NPD12_2994 PF07650 KH domain NPD12_2995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_2996 PF01219 Prokaryotic diacylglycerol kinase NPD12_2996 PF01569 PAP2 superfamily NPD12_2997 PF02130 Uncharacterized protein family UPF0054 NPD12_2998 PF01966 HD domain NPD12_2998 PF07697 NPD12_2998 NPD12_2998 PF07698 NPD12_2998 NPD12_2999 PF06898 NPD12_2999 NPD12_3 PF01479 S4 domain NPD12_30 PF01381 Helix-turn-helix NPD12_3000 PF07873 YabP family NPD12_3001 PF09424 Yqey-like protein NPD12_3002 PF01165 Ribosomal protein S21 NPD12_3003 PF01230 HIT domain NPD12_3004 PF00919 Uncharacterized protein family UPF0004 NPD12_3004 PF04055 Radical SAM superfamily NPD12_3005 PF04452 RNA methyltransferase NPD12_3006 PF06325 Ribosomal protein L11 methyltransferase (PrmA) NPD12_3007 PF00226 DnaJ domain NPD12_3007 PF00684 DnaJ central domain NPD12_3007 PF01556 DnaJ C terminal domain NPD12_3008 PF00012 Hsp70 protein NPD12_3009 PF01025 GrpE NPD12_301 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_3010 PF01628 HrcA protein C terminal domain NPD12_3010 PF08279 HTH domain NPD12_3011 PF04055 Radical SAM superfamily NPD12_3011 PF06969 HemN C-terminal domain NPD12_3012 PF00009 Elongation factor Tu GTP binding domain NPD12_3012 PF00679 Elongation factor G C-terminus NPD12_3012 PF03144 Elongation factor Tu domain 2 NPD12_3012 PF06421 GTP-binding protein LepA C-terminus NPD12_3014 PF07454 NPD12_3014 NPD12_3015 PF03418 Germination protease NPD12_3016 PF01649 Ribosomal protein S20 NPD12_3017 PF06144 DNA polymerase III, delta subunit NPD12_3018 PF03772 NPD12_3018 NPD12_302 PF00953 Glycosyl transferase family 4 NPD12_3020 PF00122 E1-E2 ATPase NPD12_3020 PF00690 Cation transporter/ATPase, N-terminus NPD12_3020 PF13246 Putative hydrolase of sodium-potassium ATPase alpha subunit NPD12_3021 PF07556 NPD12_3021 NPD12_3024 PF02086 D12 class N6 adenine-specific DNA methyltransferase NPD12_3025 PF13175 AAA ATPase domain NPD12_3025 PF13304 AAA domain NPD12_3026 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3026 PF08239 Bacterial SH3 domain NPD12_3027 PF05105 NPD12_3027 NPD12_3028 PF01548 NPD12_3028 NPD12_3028 PF02371 NPD12_3028 NPD12_3029 PF09693 NPD12_3029 NPD12_303 PF02350 UDP-N-acetylglucosamine 2-epimerase NPD12_3031 PF12571 NPD12_3031 NPD12_3032 PF10076 NPD12_3032 NPD12_3033 PF04865 NPD12_3033 NPD12_3034 PF10934 NPD12_3034 NPD12_3035 PF10844 NPD12_3035 NPD12_3037 PF01476 LysM domain NPD12_3039 PF09851 NPD12_3039 NPD12_304 PF03899 NPD12_304 NPD12_3040 PF08890 Phage XkdN-like protein NPD12_3041 PF09393 Protein of unknown function (DUF2001) NPD12_3042 PF04984 Phage tail sheath protein NPD12_3042 PF17481 NPD12_3042 NPD12_3042 PF17482 NPD12_3042 NPD12_3045 PF04883 NPD12_3045 NPD12_3047 PF05135 Phage gp6-like head-tail connector protein NPD12_3049 PF06810 NPD12_3049 NPD12_305 PF00119 ATP synthase A chain NPD12_3052 PF04233 NPD12_3052 NPD12_3053 PF05133 Phage portal protein, SPP1 Gp6-like NPD12_3054 PF03237 Terminase-like family NPD12_3054 PF17289 NPD12_3054 NPD12_3055 PF03592 Terminase small subunit NPD12_3059 PF00176 SNF2 family N-terminal domain NPD12_3059 PF00271 Helicase conserved C-terminal domain NPD12_306 PF00137 ATP synthase subunit C NPD12_3060 PF08774 VRR-NUC domain NPD12_3062 PF05272 NPD12_3062 NPD12_3063 PF04245 NPD12_3063 NPD12_3065 PF00476 DNA polymerase family A NPD12_3067 PF10991 Protein of unknown function (DUF2815) NPD12_3068 PF10926 NPD12_3068 NPD12_307 PF00430 ATP synthase B/B' CF(0) NPD12_3074 PF12728 Helix-turn-helix domain NPD12_3075 PF13443 Cro/C1-type HTH DNA-binding domain NPD12_3076 PF01381 Helix-turn-helix NPD12_3077 PF06114 Domain of unknown function (DUF955) NPD12_3078 PF00589 Phage integrase family NPD12_3078 PF14659 Phage integrase, N-terminal SAM-like domain NPD12_308 PF00213 ATP synthase delta (OSCP) subunit NPD12_3080 PF00009 Elongation factor Tu GTP binding domain NPD12_3080 PF03144 Elongation factor Tu domain 2 NPD12_3080 PF09106 Elongation factor SelB, winged helix NPD12_3080 PF09107 Elongation factor SelB, winged helix NPD12_3081 PF03841 L-seryl-tRNA selenium transferase NPD12_3081 PF12390 NPD12_3081 NPD12_3082 PF00586 AIR synthase related protein, N-terminal domain NPD12_3082 PF02769 AIR synthase related protein, C-terminal domain NPD12_3084 PF10531 SLBB domain NPD12_3084 PF12836 Helix-hairpin-helix motif NPD12_3085 PF00768 D-alanyl-D-alanine carboxypeptidase NPD12_3085 PF07943 Penicillin-binding protein 5, C-terminal domain NPD12_3086 PF00849 RNA pseudouridylate synthase NPD12_3087 PF01042 Endoribonuclease L-PSP NPD12_3088 PF03816 Cell envelope-related transcriptional attenuator domain NPD12_3088 PF13399 LytR cell envelope-related transcriptional attenuator NPD12_3089 PF01966 HD domain NPD12_309 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_309 PF00306 ATP synthase alpha/beta chain, C terminal domain NPD12_309 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_3090 PF01467 Cytidylyltransferase NPD12_3091 PF01985 CRS1 / YhbY (CRM) domain NPD12_3092 PF01018 GTP1/OBG NPD12_3092 PF01926 50S ribosome-binding GTPase NPD12_3092 PF09269 Domain of unknown function (DUF1967) NPD12_3093 PF01016 Ribosomal L27 protein NPD12_3094 PF04327 Protein of unknown function (DUF464) NPD12_3095 PF00829 Ribosomal prokaryotic L21 protein NPD12_3096 PF10150 Ribonuclease E/G family NPD12_3097 PF10105 NPD12_3097 NPD12_3098 PF04055 Radical SAM superfamily NPD12_31 PF12646 NPD12_31 NPD12_310 PF00231 ATP synthase NPD12_3100 PF01551 Peptidase family M23 NPD12_3101 PF01098 NPD12_3101 NPD12_3102 PF03776 Septum formation topological specificity factor MinE NPD12_3103 PF13614 AAA domain NPD12_3104 PF03775 Septum formation inhibitor MinC, C-terminal domain NPD12_3105 PF00905 Penicillin binding protein transpeptidase domain NPD12_3105 PF03717 Penicillin-binding Protein dimerisation domain NPD12_3106 PF04093 NPD12_3106 NPD12_3107 PF04085 rod shape-determining protein MreC NPD12_3108 PF06723 MreB/Mbl protein NPD12_3109 PF04002 RadC-like JAB domain NPD12_311 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPD12_311 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPD12_3110 PF02545 Maf-like protein NPD12_3111 PF14209 NPD12_3111 NPD12_3113 PF13420 Acetyltransferase (GNAT) domain NPD12_3114 PF02567 Phenazine biosynthesis-like protein NPD12_3117 PF01464 Transglycosylase SLT domain NPD12_3118 PF01121 Dephospho-CoA kinase NPD12_3119 PF00476 DNA polymerase family A NPD12_3119 PF01367 5'-3' exonuclease, C-terminal SAM fold NPD12_3119 PF01612 3'-5' exonuclease NPD12_3119 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NPD12_312 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NPD12_312 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NPD12_3120 PF01264 Chorismate synthase NPD12_3121 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3121 PF08239 Bacterial SH3 domain NPD12_3122 PF10779 NPD12_3122 NPD12_3124 PF00754 F5/8 type C domain NPD12_3126 PF00754 F5/8 type C domain NPD12_313 PF08680 Protein of unknown function (DUF1779) NPD12_3134 PF00656 Caspase domain NPD12_314 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPD12_3148 PF01695 IstB-like ATP binding protein NPD12_3149 PF09681 NPD12_3149 NPD12_315 PF08486 NPD12_315 NPD12_3150 PF01381 Helix-turn-helix NPD12_3151 PF01381 Helix-turn-helix NPD12_3152 PF01381 Helix-turn-helix NPD12_3155 PF03062 NPD12_3155 NPD12_3157 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_316 PF01551 Peptidase family M23 NPD12_3162 PF04246 NPD12_3162 NPD12_3163 PF00152 tRNA synthetases class II (D, K and N) NPD12_3163 PF01336 OB-fold nucleic acid binding domain NPD12_3163 PF02938 GAD domain NPD12_3164 PF03129 Anticodon binding domain NPD12_3164 PF13393 Histidyl-tRNA synthetase NPD12_3165 PF04055 Radical SAM superfamily NPD12_3166 PF00753 Metallo-beta-lactamase superfamily NPD12_3167 PF02580 D-Tyr-tRNA(Tyr) deacylase NPD12_3168 PF02824 TGS domain NPD12_3168 PF04607 Region found in RelA / SpoT proteins NPD12_3168 PF13291 ACT domain NPD12_3168 PF13328 HD domain NPD12_3169 PF00156 Phosphoribosyl transferase domain NPD12_317 PF12116 Stage III sporulation protein D NPD12_3170 PF01368 DHH family NPD12_3171 PF02355 Protein export membrane protein NPD12_3171 PF07549 SecD/SecF GG Motif NPD12_3172 PF02355 Protein export membrane protein NPD12_3173 PF04055 Radical SAM superfamily NPD12_3173 PF13186 Iron-sulfur cluster-binding domain NPD12_3173 PF13353 4Fe-4S single cluster domain NPD12_3174 PF13165 NPD12_3174 NPD12_3175 PF12670 NPD12_3175 NPD12_3176 PF02699 Preprotein translocase subunit NPD12_3177 PF01702 Queuine tRNA-ribosyltransferase NPD12_3178 PF02547 Queuosine biosynthesis protein NPD12_3179 PF05491 Holliday junction DNA helicase ruvB C-terminus NPD12_3179 PF05496 Holliday junction DNA helicase ruvB N-terminus NPD12_318 PF06723 MreB/Mbl protein NPD12_3180 PF01330 RuvA N terminal domain NPD12_3180 PF07499 RuvA, C-terminal domain NPD12_3180 PF14520 Helix-hairpin-helix domain NPD12_3182 PF01709 Transcriptional regulator NPD12_3183 PF01205 Uncharacterized protein family UPF0029 NPD12_3183 PF09186 Domain of unknown function (DUF1949) NPD12_3184 PF13646 HEAT repeats NPD12_3184 PF14493 NPD12_3184 NPD12_3185 PF00155 Aminotransferase class I and II NPD12_3185 PF00392 Bacterial regulatory proteins, gntR family NPD12_3186 PF01909 Nucleotidyltransferase domain NPD12_3188 PF00301 Rubredoxin NPD12_3189 PF01926 50S ribosome-binding GTPase NPD12_3189 PF13167 NPD12_3189 NPD12_3189 PF16360 NPD12_3189 NPD12_319 PF06866 NPD12_319 NPD12_3190 PF00156 Phosphoribosyl transferase domain NPD12_3191 PF09560 NPD12_3191 NPD12_3192 PF00905 Penicillin binding protein transpeptidase domain NPD12_3192 PF00912 Transglycosylase NPD12_3193 PF03862 NPD12_3193 NPD12_3194 PF07451 Stage V sporulation protein AD (SpoVAD) NPD12_3195 PF03862 NPD12_3195 NPD12_3196 PF04539 Sigma-70 region 3 NPD12_3196 PF04542 Sigma-70 region 2 NPD12_3196 PF04545 Sigma-70, region 4 NPD12_3197 PF13581 Histidine kinase-like ATPase domain NPD12_3198 PF01740 STAS domain NPD12_3199 PF07669 Eco57I restriction-modification methylase NPD12_3199 PF12950 TaqI-like C-terminal specificity domain NPD12_32 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NPD12_320 PF01171 PP-loop family NPD12_3200 PF01522 Polysaccharide deacetylase NPD12_3201 PF03808 NPD12_3201 NPD12_3202 PF02397 NPD12_3202 NPD12_3203 PF01943 NPD12_3203 NPD12_3203 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_3204 PF03023 NPD12_3204 NPD12_3205 PF00534 Glycosyl transferases group 1 NPD12_3205 PF13439 Glycosyltransferase Family 4 NPD12_3206 PF00534 Glycosyl transferases group 1 NPD12_3206 PF13477 Glycosyl transferase 4-like NPD12_3207 PF04932 NPD12_3207 NPD12_3208 PF00534 Glycosyl transferases group 1 NPD12_3208 PF13439 Glycosyltransferase Family 4 NPD12_3209 PF02350 UDP-N-acetylglucosamine 2-epimerase NPD12_3210 PF00534 Glycosyl transferases group 1 NPD12_3210 PF13477 Glycosyl transferase 4-like NPD12_3211 PF13692 Glycosyl transferases group 1 NPD12_3213 PF12799 Leucine Rich repeats (2 copies) NPD12_3213 PF13516 Leucine Rich repeat NPD12_3213 PF13855 Leucine rich repeat NPD12_3214 PF13440 NPD12_3214 NPD12_3214 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_3215 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_3216 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPD12_3216 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPD12_3217 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NPD12_3217 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NPD12_3217 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPD12_3218 PF02719 Polysaccharide biosynthesis protein NPD12_3218 PF13727 CoA-binding domain NPD12_3219 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3219 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPD12_3219 PF07495 Y_Y_Y domain NPD12_3220 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3221 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPD12_3222 PF00483 Nucleotidyl transferase NPD12_3223 PF00515 Tetratricopeptide repeat NPD12_3223 PF13181 Tetratricopeptide repeat NPD12_3224 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPD12_3224 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPD12_3224 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPD12_3224 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPD12_3225 PF01386 Ribosomal L25p family NPD12_3225 PF14693 Ribosomal protein TL5, C-terminal domain NPD12_3226 PF01276 Orn/Lys/Arg decarboxylase, major domain NPD12_3226 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NPD12_3228 PF01515 Phosphate acetyl/butaryl transferase NPD12_3229 PF01070 FMN-dependent dehydrogenase NPD12_3230 PF04463 NPD12_3230 NPD12_3231 PF00488 MutS domain V NPD12_3231 PF01713 Smr domain NPD12_3232 PF01136 NPD12_3232 NPD12_3232 PF12392 NPD12_3232 NPD12_3236 PF00535 Glycosyl transferase family 2 NPD12_3237 PF05164 Cell division protein ZapA NPD12_3238 PF01588 Putative tRNA binding domain NPD12_3238 PF03147 Ferredoxin-fold anticodon binding domain NPD12_3238 PF03483 B3/4 domain NPD12_3238 PF03484 tRNA synthetase B5 domain NPD12_3239 PF01409 tRNA synthetases class II core domain (F) NPD12_3239 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NPD12_3240 PF00588 SpoU rRNA Methylase family NPD12_3240 PF08032 RNA 2'-O ribose methyltransferase substrate binding NPD12_3241 PF02080 TrkA-C domain NPD12_3241 PF02254 TrkA-N domain NPD12_3242 PF02386 Cation transport protein NPD12_3243 PF00453 Ribosomal protein L20 NPD12_3244 PF01632 Ribosomal protein L35 NPD12_3245 PF00707 Translation initiation factor IF-3, C-terminal domain NPD12_3245 PF05198 Translation initiation factor IF-3, N-terminal domain NPD12_3246 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3246 PF02824 TGS domain NPD12_3246 PF03129 Anticodon binding domain NPD12_3246 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPD12_3247 PF08812 NPD12_3247 NPD12_3249 PF16962 NPD12_3249 NPD12_3250 PF00005 ABC transporter NPD12_3256 PF01430 Hsp33 protein NPD12_3257 PF13649 Methyltransferase domain NPD12_3258 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_3259 PF00005 ABC transporter NPD12_3259 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_326 PF00438 S-adenosylmethionine synthetase, N-terminal domain NPD12_326 PF02772 S-adenosylmethionine synthetase, central domain NPD12_326 PF02773 S-adenosylmethionine synthetase, C-terminal domain NPD12_3260 PF00005 ABC transporter NPD12_3260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPD12_3261 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3261 PF12911 NPD12_3261 NPD12_3262 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3263 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_3264 PF01118 Semialdehyde dehydrogenase, NAD binding domain NPD12_3264 PF02774 Semialdehyde dehydrogenase, dimerisation domain NPD12_3265 PF00701 Dihydrodipicolinate synthetase family NPD12_3266 PF01113 Dihydrodipicolinate reductase, N-terminus NPD12_3266 PF05173 Dihydrodipicolinate reductase, C-terminus NPD12_3267 PF00155 Aminotransferase class I and II NPD12_3268 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_3268 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal NPD12_3268 PF14602 Hexapeptide repeat of succinyl-transferase NPD12_3269 PF00436 Single-strand binding protein family NPD12_327 PF13538 UvrD-like helicase C-terminal domain NPD12_327 PF13604 AAA domain NPD12_327 PF14490 Helix-hairpin-helix containing domain NPD12_327 PF14520 Helix-hairpin-helix domain NPD12_3271 PF01522 Polysaccharide deacetylase NPD12_3272 PF14277 Domain of unknown function (DUF4364) NPD12_3274 PF12637 NPD12_3274 NPD12_3275 PF02875 Mur ligase family, glutamate ligase domain NPD12_3275 PF08245 Mur ligase middle domain NPD12_3276 PF00133 tRNA synthetases class I (I, L, M and V) NPD12_3276 PF08264 Anticodon-binding domain of tRNA NPD12_3276 PF10458 Valyl tRNA synthetase tRNA binding arm NPD12_3277 PF00583 Acetyltransferase (GNAT) family NPD12_3278 PF00005 ABC transporter NPD12_3280 PF13379 NMT1-like family NPD12_3281 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3281 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3281 PF09989 NPD12_3281 NPD12_3282 PF00005 ABC transporter NPD12_3283 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3284 PF13424 Tetratricopeptide repeat NPD12_3285 PF01841 Transglutaminase-like superfamily NPD12_3286 PF02631 RecX family NPD12_3287 PF00675 Insulinase (Peptidase family M16) NPD12_3287 PF05193 Peptidase M16 inactive domain NPD12_3288 PF06177 NPD12_3288 NPD12_3289 PF01613 Flavin reductase like domain NPD12_329 PF00156 Phosphoribosyl transferase domain NPD12_3290 PF01471 Putative peptidoglycan binding domain NPD12_3290 PF03734 L,D-transpeptidase catalytic domain NPD12_3291 PF01925 NPD12_3291 NPD12_3292 PF06865 Protein of unknown function (DUF1255) NPD12_3293 PF03807 NADP oxidoreductase coenzyme F420-dependent NPD12_3293 PF14748 Pyrroline-5-carboxylate reductase dimerisation NPD12_3294 PF01228 Glycine radical NPD12_3294 PF02901 Pyruvate formate lyase NPD12_3295 PF00037 4Fe-4S binding domain NPD12_3295 PF04055 Radical SAM superfamily NPD12_3295 PF13353 4Fe-4S single cluster domain NPD12_3296 PF01381 Helix-turn-helix NPD12_3296 PF07883 Cupin domain NPD12_3297 PF00533 BRCA1 C Terminus (BRCT) domain NPD12_3299 PF13519 von Willebrand factor type A domain NPD12_33 PF01177 Asp/Glu/Hydantoin racemase NPD12_330 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NPD12_330 PF16321 NPD12_330 NPD12_3300 PF07728 AAA domain (dynein-related subfamily) NPD12_3303 PF13370 4Fe-4S single cluster domain NPD12_3304 PF09989 NPD12_3304 NPD12_3306 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3307 PF00158 Sigma-54 interaction domain NPD12_3307 PF02954 Bacterial regulatory protein, Fis family NPD12_3308 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_3308 PF01012 Electron transfer flavoprotein domain NPD12_3309 PF01012 Electron transfer flavoprotein domain NPD12_331 PF01043 SecA preprotein cross-linking domain NPD12_331 PF02810 SEC-C motif NPD12_331 PF07516 SecA Wing and Scaffold domain NPD12_331 PF07517 SecA DEAD-like domain NPD12_3310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_3310 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_3310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_3311 PF00108 Thiolase, N-terminal domain NPD12_3311 PF02803 Thiolase, C-terminal domain NPD12_3312 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NPD12_3312 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NPD12_3313 PF00378 Enoyl-CoA hydratase/isomerase family NPD12_3315 PF01541 GIY-YIG catalytic domain NPD12_3315 PF02151 UvrB/uvrC motif NPD12_3316 PF00860 Permease family NPD12_3317 PF01966 HD domain NPD12_3318 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPD12_3319 PF01790 NPD12_3319 NPD12_332 PF00472 RF-1 domain NPD12_332 PF03462 PCRF domain NPD12_3320 PF12850 Calcineurin-like phosphoesterase superfamily domain NPD12_3322 PF03009 Glycerophosphoryl diester phosphodiesterase family NPD12_3323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_3323 PF02743 Cache domain NPD12_3324 PF02915 Rubrerythrin NPD12_3326 PF04055 Radical SAM superfamily NPD12_3326 PF13353 4Fe-4S single cluster domain NPD12_3327 PF01228 Glycine radical NPD12_3327 PF02901 Pyruvate formate lyase NPD12_3329 PF01386 Ribosomal L25p family NPD12_3329 PF14693 Ribosomal protein TL5, C-terminal domain NPD12_333 PF04389 Peptidase family M28 NPD12_3331 PF01475 Ferric uptake regulator family NPD12_3332 PF13416 Bacterial extracellular solute-binding protein NPD12_3334 PF08279 HTH domain NPD12_3334 PF13280 NPD12_3334 NPD12_3337 PF02517 CAAX protease self-immunity NPD12_3338 PF01926 50S ribosome-binding GTPase NPD12_3339 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3339 PF02190 ATP-dependent protease La (LON) domain NPD12_3339 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_334 PF00575 S1 RNA binding domain NPD12_334 PF09371 Tex-like protein N-terminal domain NPD12_334 PF12836 Helix-hairpin-helix motif NPD12_334 PF16921 NPD12_334 NPD12_3340 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3340 PF05362 Lon protease (S16) C-terminal proteolytic domain NPD12_3341 PF06689 ClpX C4-type zinc finger NPD12_3341 PF07724 AAA domain (Cdc48 subfamily) NPD12_3341 PF10431 C-terminal, D2-small domain, of ClpB protein NPD12_3342 PF00574 Clp protease NPD12_3343 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NPD12_3343 PF05697 Bacterial trigger factor protein (TF) NPD12_3343 PF05698 Bacterial trigger factor protein (TF) C-terminus NPD12_3344 PF01261 Xylose isomerase-like TIM barrel NPD12_3346 PF00156 Phosphoribosyl transferase domain NPD12_3347 PF01180 Dihydroorotate dehydrogenase NPD12_3348 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_3349 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NPD12_335 PF12822 Protein of unknown function (DUF3816) NPD12_3350 PF01979 Amidohydrolase family NPD12_3351 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NPD12_3351 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NPD12_3352 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPD12_3352 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPD12_3353 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3354 PF11823 NPD12_3354 NPD12_3355 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3356 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3357 PF02635 DsrE/DsrF-like family NPD12_3358 PF00005 ABC transporter NPD12_3359 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_3362 PF03243 Alkylmercury lyase NPD12_3363 PF13379 NMT1-like family NPD12_3365 PF03773 NPD12_3365 NPD12_337 PF01312 FlhB HrpN YscU SpaS Family NPD12_338 PF00149 Calcineurin-like phosphoesterase NPD12_3389 PF12850 Calcineurin-like phosphoesterase superfamily domain NPD12_339 PF12840 Helix-turn-helix domain NPD12_3390 PF01725 Ham1 family NPD12_3393 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPD12_3394 PF02637 GatB domain NPD12_3394 PF02934 GatB/GatE catalytic domain NPD12_3395 PF01425 Amidase NPD12_3396 PF02686 Glu-tRNAGln amidotransferase C subunit NPD12_3397 PF00375 Sodium:dicarboxylate symporter family NPD12_3399 PF00533 BRCA1 C Terminus (BRCT) domain NPD12_3399 PF01653 NAD-dependent DNA ligase adenylation domain NPD12_3399 PF03120 NAD-dependent DNA ligase OB-fold domain NPD12_3399 PF12826 Helix-hairpin-helix motif NPD12_3399 PF14520 Helix-hairpin-helix domain NPD12_34 PF00120 Glutamine synthetase, catalytic domain NPD12_340 PF00581 Rhodanese-like domain NPD12_340 PF01206 Sulfurtransferase TusA NPD12_340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_340 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_340 PF13686 DsrE/DsrF/DrsH-like family NPD12_3400 PF00580 UvrD/REP helicase N-terminal domain NPD12_3400 PF13361 UvrD-like helicase C-terminal domain NPD12_3401 PF01371 Trp repressor protein NPD12_3402 PF00849 RNA pseudouridylate synthase NPD12_3402 PF01479 S4 domain NPD12_3403 PF01464 Transglycosylase SLT domain NPD12_3404 PF07495 Y_Y_Y domain NPD12_3406 PF02639 NPD12_3406 NPD12_3407 PF00342 Phosphoglucose isomerase NPD12_3408 PF13451 NPD12_3408 NPD12_3409 PF00440 Bacterial regulatory proteins, tetR family NPD12_341 PF09986 NPD12_341 NPD12_3410 PF00583 Acetyltransferase (GNAT) family NPD12_3411 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_3411 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_3412 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_3412 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_3414 PF00037 4Fe-4S binding domain NPD12_3414 PF00766 Electron transfer flavoprotein FAD-binding domain NPD12_3414 PF01012 Electron transfer flavoprotein domain NPD12_3415 PF01012 Electron transfer flavoprotein domain NPD12_3416 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPD12_3416 PF02770 Acyl-CoA dehydrogenase, middle domain NPD12_3416 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPD12_3417 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3418 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NPD12_3419 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_342 PF04607 Region found in RelA / SpoT proteins NPD12_3420 PF02515 CoA-transferase family III NPD12_3421 PF00501 AMP-binding enzyme NPD12_3421 PF13193 AMP-binding enzyme C-terminal domain NPD12_3422 PF05525 NPD12_3422 NPD12_3423 PF00117 Glutamine amidotransferase class-I NPD12_3423 PF00958 GMP synthase C terminal domain NPD12_3423 PF02540 NAD synthase NPD12_3424 PF00478 IMP dehydrogenase / GMP reductase domain NPD12_3424 PF00571 CBS domain NPD12_3425 PF01171 PP-loop family NPD12_3426 PF00118 TCP-1/cpn60 chaperonin family NPD12_3427 PF00166 Chaperonin 10 Kd subunit NPD12_3428 PF09335 NPD12_3428 NPD12_3429 PF07314 NPD12_3429 NPD12_343 PF00133 tRNA synthetases class I (I, L, M and V) NPD12_343 PF08264 Anticodon-binding domain of tRNA NPD12_343 PF09334 tRNA synthetases class I (M) NPD12_343 PF13603 Leucyl-tRNA synthetase, Domain 2 NPD12_3430 PF00037 4Fe-4S binding domain NPD12_3430 PF02906 Iron only hydrogenase large subunit, C-terminal domain NPD12_3430 PF12838 4Fe-4S dicluster domain NPD12_3431 PF00730 HhH-GPD superfamily base excision DNA repair protein NPD12_3431 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain NPD12_3432 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_3432 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_3433 PF00175 Oxidoreductase NAD-binding domain NPD12_3433 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPD12_3434 PF02629 CoA binding domain NPD12_3434 PF06971 Putative DNA-binding protein N-terminus NPD12_3435 PF00005 ABC transporter NPD12_3435 PF12848 ABC transporter NPD12_3436 PF00072 Response regulator receiver domain NPD12_3436 PF04397 LytTr DNA-binding domain NPD12_3437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_3437 PF06580 NPD12_3437 NPD12_3437 PF07694 5TMR of 5TMR-LYT NPD12_3438 PF02554 NPD12_3438 NPD12_3438 PF13722 NPD12_3438 NPD12_3439 PF00675 Insulinase (Peptidase family M16) NPD12_3439 PF05193 Peptidase M16 inactive domain NPD12_3439 PF08367 Peptidase M16C associated NPD12_344 PF00581 Rhodanese-like domain NPD12_3440 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain NPD12_3440 PF00364 Biotin-requiring enzyme NPD12_3440 PF00682 HMGL-like NPD12_3440 PF02436 Conserved carboxylase domain NPD12_3440 PF02785 Biotin carboxylase C-terminal domain NPD12_3440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_3441 PF00814 Glycoprotease family NPD12_3442 PF05866 Endodeoxyribonuclease RusA NPD12_3443 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_3445 PF17032 NPD12_3445 NPD12_3447 PF01297 Periplasmic solute binding protein family NPD12_3448 PF01966 HD domain NPD12_3449 PF02367 Uncharacterised P-loop hydrolase UPF0079 NPD12_3450 PF00814 Glycoprotease family NPD12_3451 PF00583 Acetyltransferase (GNAT) family NPD12_3452 PF00579 tRNA synthetases class I (W and Y) NPD12_3452 PF01479 S4 domain NPD12_3454 PF04326 Divergent AAA domain NPD12_3455 PF07155 ECF-type riboflavin transporter, S component NPD12_3457 PF14378 NPD12_3457 NPD12_3458 PF00009 Elongation factor Tu GTP binding domain NPD12_3458 PF03144 Elongation factor Tu domain 2 NPD12_3458 PF16658 NPD12_3458 NPD12_3459 PF08282 haloacid dehalogenase-like hydrolase NPD12_3460 PF00579 tRNA synthetases class I (W and Y) NPD12_3461 PF01880 Desulfoferrodoxin NPD12_3461 PF06397 Desulfoferrodoxin, N-terminal domain NPD12_3463 PF00082 Subtilase family NPD12_3464 PF01797 Transposase IS200 like NPD12_3465 PF12679 NPD12_3465 NPD12_3469 PF12679 NPD12_3469 NPD12_347 PF00226 DnaJ domain NPD12_3470 PF00005 ABC transporter NPD12_3474 PF04055 Radical SAM superfamily NPD12_3474 PF13353 4Fe-4S single cluster domain NPD12_3475 PF00005 ABC transporter NPD12_3475 PF00664 ABC transporter transmembrane region NPD12_3476 PF06165 Glycosyltransferase family 36 NPD12_3476 PF10091 Putative glucoamylase NPD12_3476 PF17167 NPD12_3476 NPD12_3477 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NPD12_3477 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NPD12_3478 PF00696 Amino acid kinase family NPD12_3478 PF13840 ACT domain NPD12_3479 PF02127 Aminopeptidase I zinc metalloprotease (M18) NPD12_3480 PF01545 Cation efflux family NPD12_3480 PF16916 NPD12_3480 NPD12_3482 PF13245 Part of AAA domain NPD12_3483 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3483 PF01434 Peptidase family M41 NPD12_3483 PF06480 FtsH Extracellular NPD12_3484 PF01546 Peptidase family M20/M25/M40 NPD12_3484 PF07687 Peptidase dimerisation domain NPD12_3485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3485 PF03129 Anticodon binding domain NPD12_3485 PF09180 Prolyl-tRNA synthetase, C-terminal NPD12_3486 PF01541 GIY-YIG catalytic domain NPD12_3489 PF00005 ABC transporter NPD12_349 PF01928 CYTH domain NPD12_3491 PF04542 Sigma-70 region 2 NPD12_3491 PF08281 Sigma-70, region 4 NPD12_3492 PF00916 NPD12_3492 NPD12_3492 PF01740 STAS domain NPD12_3493 PF00512 His Kinase A (phospho-acceptor) domain NPD12_3493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_3494 PF00072 Response regulator receiver domain NPD12_3494 PF00486 Transcriptional regulatory protein, C terminal NPD12_3495 PF12679 NPD12_3495 NPD12_3496 PF00005 ABC transporter NPD12_3498 PF03984 NPD12_3498 NPD12_3499 PF05913 Bacterial protein of unknown function (DUF871) NPD12_35 PF13563 2'-5' RNA ligase superfamily NPD12_350 PF04245 NPD12_350 NPD12_3500 PF01869 BadF/BadG/BcrA/BcrD ATPase family NPD12_3501 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NPD12_3502 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_3503 PF00158 Sigma-54 interaction domain NPD12_3503 PF00874 PRD domain NPD12_3503 PF03610 PTS system fructose IIA component NPD12_3504 PF02378 Phosphotransferase system, EIIC NPD12_3505 PF02056 Family 4 glycosyl hydrolase NPD12_3505 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_3506 PF00990 GGDEF domain NPD12_3507 PF00589 Phage integrase family NPD12_3508 PF02675 S-adenosylmethionine decarboxylase NPD12_3509 PF01861 Protein of unknown function DUF43 NPD12_351 PF01116 Fructose-bisphosphate aldolase class-II NPD12_3510 PF08765 Mor transcription activator family NPD12_3511 PF01638 HxlR-like helix-turn-helix NPD12_3512 PF01613 Flavin reductase like domain NPD12_3513 PF05368 NmrA-like family NPD12_3514 PF00248 Aldo/keto reductase family NPD12_3515 PF03358 NADPH-dependent FMN reductase NPD12_3516 PF13411 MerR HTH family regulatory protein NPD12_3517 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_3518 PF01370 NAD dependent epimerase/dehydratase family NPD12_3519 PF12833 Helix-turn-helix domain NPD12_352 PF14276 NPD12_352 NPD12_3520 PF01872 RibD C-terminal domain NPD12_3521 PF04657 NPD12_3521 NPD12_3522 PF02082 Transcriptional regulator NPD12_3523 PF00583 Acetyltransferase (GNAT) family NPD12_3524 PF01938 TRAM domain NPD12_3524 PF05958 tRNA (Uracil-5-)-methyltransferase NPD12_3525 PF07561 NPD12_3525 NPD12_3526 PF00248 Aldo/keto reductase family NPD12_3526 PF13534 4Fe-4S dicluster domain NPD12_3527 PF00224 Pyruvate kinase, barrel domain NPD12_3527 PF00391 PEP-utilising enzyme, mobile domain NPD12_3527 PF02887 Pyruvate kinase, alpha/beta domain NPD12_3528 PF00365 Phosphofructokinase NPD12_3529 PF01336 OB-fold nucleic acid binding domain NPD12_3529 PF02811 PHP domain NPD12_3529 PF07733 Bacterial DNA polymerase III alpha subunit NPD12_3529 PF14579 Helix-hairpin-helix motif NPD12_353 PF04239 Protein of unknown function (DUF421) NPD12_3530 PF02650 WhiA C-terminal HTH domain NPD12_3530 PF10298 WhiA N-terminal LAGLIDADG-like domain NPD12_3530 PF14527 WhiA LAGLIDADG-like domain NPD12_3531 PF01933 Uncharacterised protein family UPF0052 NPD12_3532 PF03668 NPD12_3532 NPD12_3533 PF01565 FAD binding domain NPD12_3533 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NPD12_3534 PF02811 PHP domain NPD12_3535 PF01541 GIY-YIG catalytic domain NPD12_3535 PF02151 UvrB/uvrC motif NPD12_3535 PF08459 UvrC Helix-hairpin-helix N-terminal NPD12_3535 PF12826 Helix-hairpin-helix motif NPD12_3536 PF04307 NPD12_3536 NPD12_3537 PF01336 OB-fold nucleic acid binding domain NPD12_3537 PF01966 HD domain NPD12_3538 PF00905 Penicillin binding protein transpeptidase domain NPD12_3539 PF01098 NPD12_3539 NPD12_354 PF00485 Phosphoribulokinase / Uridine kinase family NPD12_3540 PF00498 FHA domain NPD12_3541 PF00005 ABC transporter NPD12_3542 PF00271 Helicase conserved C-terminal domain NPD12_3542 PF02151 UvrB/uvrC motif NPD12_3542 PF04851 Type III restriction enzyme, res subunit NPD12_3542 PF12344 Ultra-violet resistance protein B NPD12_3543 PF13180 PDZ domain NPD12_3544 PF03572 Peptidase family S41 NPD12_3544 PF13180 PDZ domain NPD12_3545 PF02687 NPD12_3545 NPD12_3546 PF00005 ABC transporter NPD12_3547 PF02588 NPD12_3547 NPD12_3547 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_3549 PF02779 Transketolase, pyrimidine binding domain NPD12_3549 PF02780 Transketolase, C-terminal domain NPD12_3550 PF00456 Transketolase, thiamine diphosphate binding domain NPD12_3551 PF02452 PemK-like protein NPD12_3553 PF00842 Alanine racemase, C-terminal domain NPD12_3553 PF01168 Alanine racemase, N-terminal domain NPD12_3555 PF01256 Carbohydrate kinase NPD12_3555 PF03853 YjeF-related protein N-terminus NPD12_3556 PF01648 4'-phosphopantetheinyl transferase superfamily NPD12_3558 PF03553 NPD12_3558 NPD12_3559 PF03631 NPD12_3559 NPD12_356 PF01066 CDP-alcohol phosphatidyltransferase NPD12_3561 PF00163 Ribosomal protein S4/S9 N-terminal domain NPD12_3561 PF01479 S4 domain NPD12_3562 PF00375 Sodium:dicarboxylate symporter family NPD12_3563 PF07875 NPD12_3563 NPD12_3564 PF06445 GyrI-like small molecule binding domain NPD12_3564 PF13411 MerR HTH family regulatory protein NPD12_3565 PF02633 Creatinine amidohydrolase NPD12_3566 PF02633 Creatinine amidohydrolase NPD12_3567 PF00080 Copper/zinc superoxide dismutase (SODC) NPD12_3568 PF01380 SIS domain NPD12_3568 PF13522 Glutamine amidotransferase domain NPD12_3569 PF00923 Transaldolase NPD12_357 PF00571 CBS domain NPD12_3570 PF13419 Haloacid dehalogenase-like hydrolase NPD12_3571 PF13561 Enoyl-(Acyl carrier protein) reductase NPD12_3572 PF03829 PTS system glucitol/sorbitol-specific IIA component NPD12_3573 PF03612 NPD12_3573 NPD12_3573 PF07663 NPD12_3573 NPD12_3574 PF03608 NPD12_3574 NPD12_3575 PF06923 NPD12_3575 NPD12_3576 PF00107 Zinc-binding dehydrogenase NPD12_3576 PF08240 Alcohol dehydrogenase GroES-like domain NPD12_3577 PF04198 Putative sugar-binding domain NPD12_3577 PF13412 Winged helix-turn-helix DNA-binding NPD12_3578 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPD12_3578 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPD12_3578 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPD12_3578 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPD12_3579 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NPD12_358 PF00781 Diacylglycerol kinase catalytic domain NPD12_3580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPD12_3581 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NPD12_3581 PF17147 NPD12_3581 NPD12_3582 PF12838 4Fe-4S dicluster domain NPD12_3583 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPD12_3584 PF00871 Acetokinase family NPD12_3585 PF01515 Phosphate acetyl/butaryl transferase NPD12_3586 PF00871 Acetokinase family NPD12_3587 PF03486 HI0933-like protein NPD12_3588 PF07949 YbbR-like protein NPD12_3589 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPD12_3590 PF07486 Cell Wall Hydrolase NPD12_3591 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_3592 PF00085 Thioredoxin NPD12_3593 PF01979 Amidohydrolase family NPD12_3594 PF00515 Tetratricopeptide repeat NPD12_3594 PF13174 Tetratricopeptide repeat NPD12_3595 PF15525 Domain of unknown function (DUF4652) NPD12_3596 PF00391 PEP-utilising enzyme, mobile domain NPD12_3596 PF02896 PEP-utilising enzyme, TIM barrel domain NPD12_3596 PF05524 PEP-utilising enzyme, N-terminal NPD12_3597 PF00158 Sigma-54 interaction domain NPD12_3597 PF00381 PTS HPr component phosphorylation site NPD12_3597 PF00989 PAS fold NPD12_3597 PF13426 PAS domain NPD12_3598 PF13181 Tetratricopeptide repeat NPD12_3599 PF05683 Fumarase C-terminus NPD12_36 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPD12_360 PF04055 Radical SAM superfamily NPD12_360 PF08497 NPD12_360 NPD12_360 PF11842 NPD12_360 NPD12_3600 PF05681 NPD12_3600 NPD12_3601 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_3602 PF01895 PhoU domain NPD12_3602 PF02690 NPD12_3602 NPD12_3603 PF00380 Ribosomal protein S9/S16 NPD12_3604 PF00572 Ribosomal protein L13 NPD12_3605 PF01416 tRNA pseudouridine synthase NPD12_3606 PF02361 Cobalt transport protein NPD12_3607 PF00005 ABC transporter NPD12_3608 PF00005 ABC transporter NPD12_3609 PF01196 Ribosomal protein L17 NPD12_361 PF00571 CBS domain NPD12_361 PF03448 MgtE intracellular N domain NPD12_361 PF05239 PRC-barrel domain NPD12_3610 PF01000 RNA polymerase Rpb3/RpoA insert domain NPD12_3610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NPD12_3610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NPD12_3611 PF00163 Ribosomal protein S4/S9 N-terminal domain NPD12_3611 PF01479 S4 domain NPD12_3612 PF00411 Ribosomal protein S11 NPD12_3613 PF00416 Ribosomal protein S13/S18 NPD12_3614 PF00444 Ribosomal protein L36 NPD12_3615 PF01176 Translation initiation factor 1A / IF-1 NPD12_3617 PF00557 Metallopeptidase family M24 NPD12_3618 PF00406 Adenylate kinase NPD12_3618 PF05191 Adenylate kinase, active site lid NPD12_3619 PF00344 SecY translocase NPD12_362 PF01471 Putative peptidoglycan binding domain NPD12_362 PF07486 Cell Wall Hydrolase NPD12_3620 PF00828 Ribosomal protein L18e/L15 NPD12_3621 PF00327 Ribosomal protein L30p/L7e NPD12_3622 PF00333 Ribosomal protein S5, N-terminal domain NPD12_3622 PF03719 Ribosomal protein S5, C-terminal domain NPD12_3623 PF00861 Ribosomal L18p/L5e family NPD12_3624 PF00347 Ribosomal protein L6 NPD12_3625 PF00410 Ribosomal protein S8 NPD12_3626 PF00253 Ribosomal protein S14p/S29e NPD12_3627 PF00281 Ribosomal protein L5 NPD12_3627 PF00673 ribosomal L5P family C-terminus NPD12_3628 PF00467 KOW motif NPD12_3628 PF17136 NPD12_3628 NPD12_3629 PF00238 Ribosomal protein L14p/L23e NPD12_363 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_3630 PF00366 Ribosomal protein S17 NPD12_3631 PF00831 Ribosomal L29 protein NPD12_3632 PF00252 Ribosomal protein L16p/L10e NPD12_3633 PF00189 Ribosomal protein S3, C-terminal domain NPD12_3633 PF07650 KH domain NPD12_3634 PF00237 Ribosomal protein L22p/L17e NPD12_3635 PF00203 Ribosomal protein S19 NPD12_3636 PF00181 Ribosomal Proteins L2, RNA binding domain NPD12_3636 PF03947 Ribosomal Proteins L2, C-terminal domain NPD12_3637 PF00276 Ribosomal protein L23 NPD12_3638 PF00573 Ribosomal protein L4/L1 family NPD12_3639 PF00297 Ribosomal protein L3 NPD12_364 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_3640 PF00338 Ribosomal protein S10p/S20e NPD12_3641 PF00009 Elongation factor Tu GTP binding domain NPD12_3641 PF03143 Elongation factor Tu C-terminal domain NPD12_3641 PF03144 Elongation factor Tu domain 2 NPD12_3642 PF00009 Elongation factor Tu GTP binding domain NPD12_3642 PF00679 Elongation factor G C-terminus NPD12_3642 PF03144 Elongation factor Tu domain 2 NPD12_3642 PF03764 Elongation factor G, domain IV NPD12_3642 PF14492 Elongation Factor G, domain II NPD12_3643 PF00177 Ribosomal protein S7p/S5e NPD12_3644 PF00164 Ribosomal protein S12/S23 NPD12_3645 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NPD12_3646 PF00623 RNA polymerase Rpb1, domain 2 NPD12_3646 PF04983 RNA polymerase Rpb1, domain 3 NPD12_3646 PF04997 RNA polymerase Rpb1, domain 1 NPD12_3646 PF04998 RNA polymerase Rpb1, domain 5 NPD12_3646 PF05000 RNA polymerase Rpb1, domain 4 NPD12_3647 PF00562 RNA polymerase Rpb2, domain 6 NPD12_3647 PF04560 RNA polymerase Rpb2, domain 7 NPD12_3647 PF04561 RNA polymerase Rpb2, domain 2 NPD12_3647 PF04563 RNA polymerase beta subunit NPD12_3647 PF04565 RNA polymerase Rpb2, domain 3 NPD12_3647 PF10385 RNA polymerase beta subunit external 1 domain NPD12_3648 PF00542 Ribosomal protein L7/L12 C-terminal domain NPD12_3648 PF16320 NPD12_3648 NPD12_3649 PF00466 Ribosomal protein L10 NPD12_365 PF08331 NPD12_365 NPD12_365 PF13484 NPD12_365 NPD12_3650 PF00687 Ribosomal protein L1p/L10e family NPD12_3651 PF00298 Ribosomal protein L11, RNA binding domain NPD12_3651 PF03946 Ribosomal protein L11, N-terminal domain NPD12_3652 PF00467 KOW motif NPD12_3652 PF02357 Transcription termination factor nusG NPD12_3653 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NPD12_3654 PF00471 Ribosomal protein L33 NPD12_3655 PF00009 Elongation factor Tu GTP binding domain NPD12_3655 PF03143 Elongation factor Tu C-terminal domain NPD12_3655 PF03144 Elongation factor Tu domain 2 NPD12_3658 PF04542 Sigma-70 region 2 NPD12_3658 PF08281 Sigma-70, region 4 NPD12_3659 PF05991 NPD12_3659 NPD12_366 PF01553 Acyltransferase NPD12_3660 PF00588 SpoU rRNA Methylase family NPD12_3660 PF08032 RNA 2'-O ribose methyltransferase substrate binding NPD12_3661 PF02511 Thymidylate synthase complementing protein NPD12_3662 PF00636 Ribonuclease III domain NPD12_3663 PF01406 tRNA synthetases class I (C) catalytic domain NPD12_3663 PF09190 DALR domain NPD12_3664 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_3665 PF03129 Anticodon binding domain NPD12_3665 PF04073 Aminoacyl-tRNA editing domain NPD12_3666 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NPD12_3667 PF01850 PIN domain NPD12_3667 PF01938 TRAM domain NPD12_367 PF00633 Helix-hairpin-helix motif NPD12_367 PF00730 HhH-GPD superfamily base excision DNA repair protein NPD12_367 PF10576 Iron-sulfur binding domain of endonuclease III NPD12_3670 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPD12_3670 PF10635 DisA bacterial checkpoint controller linker region NPD12_3671 PF13481 AAA domain NPD12_3671 PF13541 Subunit ChlI of Mg-chelatase NPD12_3672 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3672 PF02151 UvrB/uvrC motif NPD12_3672 PF02861 Clp amino terminal domain NPD12_3672 PF07724 AAA domain (Cdc48 subfamily) NPD12_3672 PF10431 C-terminal, D2-small domain, of ClpB protein NPD12_3673 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain NPD12_3674 PF02151 UvrB/uvrC motif NPD12_3675 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) NPD12_3677 PF00009 Elongation factor Tu GTP binding domain NPD12_3677 PF00679 Elongation factor G C-terminus NPD12_3677 PF03764 Elongation factor G, domain IV NPD12_3677 PF14492 Elongation Factor G, domain II NPD12_368 PF00390 Malic enzyme, N-terminal domain NPD12_368 PF03949 Malic enzyme, NAD binding domain NPD12_3689 PF08245 Mur ligase middle domain NPD12_369 PF00994 Probable molybdopterin binding domain NPD12_369 PF02464 Competence-damaged protein NPD12_3691 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_3691 PF03129 Anticodon binding domain NPD12_3692 PF00152 tRNA synthetases class II (D, K and N) NPD12_3692 PF01336 OB-fold nucleic acid binding domain NPD12_3693 PF01272 Transcription elongation factor, GreA/GreB, C-term NPD12_3693 PF03449 Transcription elongation factor, N-terminal NPD12_3695 PF01207 Dihydrouridine synthase (Dus) NPD12_3696 PF03309 Type III pantothenate kinase NPD12_3697 PF01268 Formate--tetrahydrofolate ligase NPD12_3698 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_3698 PF01434 Peptidase family M41 NPD12_3699 PF00156 Phosphoribosyl transferase domain NPD12_37 PF12706 Beta-lactamase superfamily domain NPD12_370 PF09752 Uncharacterized conserved protein (DUF2048) NPD12_370 PF12146 Putative lysophospholipase NPD12_3700 PF01171 PP-loop family NPD12_3700 PF11734 TilS substrate C-terminal domain NPD12_3701 PF07228 Stage II sporulation protein E (SpoIIE) NPD12_3709 PF00575 S1 RNA binding domain NPD12_371 PF05343 M42 glutamyl aminopeptidase NPD12_3710 PF04977 Septum formation initiator NPD12_3711 PF13936 Helix-turn-helix domain NPD12_3712 PF03838 Recombination protein U NPD12_3714 PF02511 Thymidylate synthase complementing protein NPD12_372 PF04294 NPD12_372 NPD12_372 PF12229 Putative peptidoglycan binding domain NPD12_3723 PF13443 Cro/C1-type HTH DNA-binding domain NPD12_3729 PF03592 Terminase small subunit NPD12_373 PF04294 NPD12_373 NPD12_373 PF07501 G5 domain NPD12_373 PF12229 Putative peptidoglycan binding domain NPD12_3730 PF04466 Phage terminase large subunit NPD12_3730 PF17288 NPD12_3730 NPD12_3738 PF14020 NPD12_3738 NPD12_3741 PF13730 NPD12_3741 NPD12_3748 PF04860 Phage portal protein NPD12_3749 PF04233 NPD12_3749 NPD12_375 PF00588 SpoU rRNA Methylase family NPD12_3751 PF05869 NPD12_3751 NPD12_3752 PF01555 DNA methylase NPD12_3758 PF07659 NPD12_3758 NPD12_376 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_3764 PF00436 Single-strand binding protein family NPD12_3769 PF04586 NPD12_3769 NPD12_377 PF02608 Basic membrane protein NPD12_3771 PF05065 Phage capsid family NPD12_3778 PF11863 NPD12_3778 NPD12_378 PF00005 ABC transporter NPD12_3783 PF10145 NPD12_3783 NPD12_3784 PF09851 NPD12_3784 NPD12_379 PF02653 NPD12_379 NPD12_3790 PF04865 NPD12_3790 NPD12_3791 PF11041 NPD12_3791 NPD12_3798 PF01520 N-acetylmuramoyl-L-alanine amidase NPD12_38 PF10646 NPD12_38 NPD12_380 PF02653 NPD12_380 NPD12_3805 PF13560 Helix-turn-helix domain NPD12_3806 PF05565 NPD12_3806 NPD12_3808 PF04404 NPD12_3808 NPD12_381 PF01522 Polysaccharide deacetylase NPD12_3812 PF12116 Stage III sporulation protein D NPD12_3814 PF13155 Toprim-like NPD12_3814 PF13481 AAA domain NPD12_382 PF00309 NPD12_382 NPD12_382 PF04552 Sigma-54, DNA binding domain NPD12_382 PF04963 Sigma-54 factor, core binding domain NPD12_3820 PF08761 dUTPase NPD12_3821 PF01076 Plasmid recombination enzyme NPD12_3824 PF12671 NPD12_3824 NPD12_3826 PF01446 NPD12_3826 NPD12_383 PF04198 Putative sugar-binding domain NPD12_384 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NPD12_384 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NPD12_385 PF00162 Phosphoglycerate kinase NPD12_386 PF00121 Triosephosphate isomerase NPD12_387 PF01676 Metalloenzyme superfamily NPD12_387 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NPD12_388 PF00113 Enolase, C-terminal TIM barrel domain NPD12_388 PF03952 Enolase, N-terminal domain NPD12_389 PF03840 Preprotein translocase SecG subunit NPD12_39 PF02810 SEC-C motif NPD12_390 PF00575 S1 RNA binding domain NPD12_390 PF00773 RNB domain NPD12_390 PF08206 Ribonuclease B OB domain NPD12_391 PF01975 Survival protein SurE NPD12_392 PF01668 SmpB protein NPD12_393 PF00375 Sodium:dicarboxylate symporter family NPD12_394 PF01380 SIS domain NPD12_394 PF01418 Helix-turn-helix domain, rpiR family NPD12_395 PF02378 Phosphotransferase system, EIIC NPD12_396 PF02056 Family 4 glycosyl hydrolase NPD12_396 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_397 PF00480 ROK family NPD12_398 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NPD12_399 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPD12_4 PF00216 Bacterial DNA-binding protein NPD12_40 PF02590 Predicted SPOUT methyltransferase NPD12_400 PF14528 LAGLIDADG-like domain NPD12_401 PF12833 Helix-turn-helix domain NPD12_404 PF00669 Bacterial flagellin N-terminal helical region NPD12_404 PF00700 Bacterial flagellin C-terminal helical region NPD12_405 PF01569 PAP2 superfamily NPD12_406 PF00072 Response regulator receiver domain NPD12_406 PF00486 Transcriptional regulatory protein, C terminal NPD12_407 PF00005 ABC transporter NPD12_408 PF12730 NPD12_408 NPD12_409 PF00512 His Kinase A (phospho-acceptor) domain NPD12_409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_41 PF07690 Major Facilitator Superfamily NPD12_410 PF07883 Cupin domain NPD12_412 PF00324 Amino acid permease NPD12_413 PF00753 Metallo-beta-lactamase superfamily NPD12_414 PF13420 Acetyltransferase (GNAT) domain NPD12_415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPD12_416 PF13527 Acetyltransferase (GNAT) domain NPD12_417 PF01872 RibD C-terminal domain NPD12_418 PF00533 BRCA1 C Terminus (BRCT) domain NPD12_418 PF00929 Exonuclease NPD12_419 PF00857 Isochorismatase family NPD12_42 PF03358 NADPH-dependent FMN reductase NPD12_420 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPD12_422 PF00941 FAD binding domain in molybdopterin dehydrogenase NPD12_423 PF03862 NPD12_423 NPD12_424 PF07451 Stage V sporulation protein AD (SpoVAD) NPD12_425 PF03862 NPD12_425 NPD12_426 PF04239 Protein of unknown function (DUF421) NPD12_426 PF07870 NPD12_426 NPD12_427 PF07870 NPD12_427 NPD12_428 PF07870 NPD12_428 NPD12_43 PF00440 Bacterial regulatory proteins, tetR family NPD12_43 PF16859 NPD12_43 NPD12_430 PF02683 NPD12_430 NPD12_431 PF00578 AhpC/TSA family NPD12_432 PF00072 Response regulator receiver domain NPD12_432 PF00486 Transcriptional regulatory protein, C terminal NPD12_433 PF00512 His Kinase A (phospho-acceptor) domain NPD12_433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_434 PF01565 FAD binding domain NPD12_435 PF02056 Family 4 glycosyl hydrolase NPD12_435 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_436 PF00367 phosphotransferase system, EIIB NPD12_436 PF02378 Phosphotransferase system, EIIC NPD12_437 PF01380 SIS domain NPD12_437 PF01418 Helix-turn-helix domain, rpiR family NPD12_438 PF01380 SIS domain NPD12_438 PF01418 Helix-turn-helix domain, rpiR family NPD12_439 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_44 PF12833 Helix-turn-helix domain NPD12_440 PF00072 Response regulator receiver domain NPD12_440 PF00486 Transcriptional regulatory protein, C terminal NPD12_441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_442 PF00005 ABC transporter NPD12_443 PF02687 NPD12_443 NPD12_444 PF00367 phosphotransferase system, EIIB NPD12_444 PF02378 Phosphotransferase system, EIIC NPD12_445 PF02056 Family 4 glycosyl hydrolase NPD12_445 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_446 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_447 PF01380 SIS domain NPD12_447 PF01418 Helix-turn-helix domain, rpiR family NPD12_448 PF00313 'Cold-shock' DNA-binding domain NPD12_449 PF06210 NPD12_449 NPD12_45 PF00557 Metallopeptidase family M24 NPD12_45 PF02810 SEC-C motif NPD12_450 PF02082 Transcriptional regulator NPD12_451 PF01323 DSBA-like thioredoxin domain NPD12_452 PF13460 NADH(P)-binding NPD12_453 PF01380 SIS domain NPD12_453 PF01418 Helix-turn-helix domain, rpiR family NPD12_454 PF00367 phosphotransferase system, EIIB NPD12_454 PF02378 Phosphotransferase system, EIIC NPD12_455 PF02056 Family 4 glycosyl hydrolase NPD12_455 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPD12_456 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_457 PF00920 Dehydratase family NPD12_458 PF01081 KDPG and KHG aldolase NPD12_459 PF00294 pfkB family carbohydrate kinase NPD12_46 PF00881 Nitroreductase family NPD12_460 PF01979 Amidohydrolase family NPD12_460 PF13382 Adenine deaminase C-terminal domain NPD12_461 PF00072 Response regulator receiver domain NPD12_461 PF00486 Transcriptional regulatory protein, C terminal NPD12_462 PF00512 His Kinase A (phospho-acceptor) domain NPD12_462 PF00672 HAMP domain NPD12_462 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_463 PF00535 Glycosyl transferase family 2 NPD12_464 PF04138 NPD12_464 NPD12_465 PF13231 NPD12_465 NPD12_466 PF12833 Helix-turn-helix domain NPD12_467 PF01497 Periplasmic binding protein NPD12_468 PF01032 FecCD transport family NPD12_469 PF00005 ABC transporter NPD12_47 PF11230 NPD12_47 NPD12_470 PF01554 MatE NPD12_471 PF12833 Helix-turn-helix domain NPD12_472 PF01497 Periplasmic binding protein NPD12_473 PF12833 Helix-turn-helix domain NPD12_474 PF01497 Periplasmic binding protein NPD12_475 PF01032 FecCD transport family NPD12_476 PF01032 FecCD transport family NPD12_477 PF00005 ABC transporter NPD12_478 PF00005 ABC transporter NPD12_478 PF00664 ABC transporter transmembrane region NPD12_479 PF01325 Iron dependent repressor, N-terminal DNA binding domain NPD12_479 PF02742 Iron dependent repressor, metal binding and dimerisation domain NPD12_48 PF04055 Radical SAM superfamily NPD12_48 PF13353 4Fe-4S single cluster domain NPD12_480 PF00860 Permease family NPD12_481 PF00156 Phosphoribosyl transferase domain NPD12_482 PF00072 Response regulator receiver domain NPD12_482 PF00486 Transcriptional regulatory protein, C terminal NPD12_483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_484 PF02673 NPD12_484 NPD12_485 PF00005 ABC transporter NPD12_486 PF02687 NPD12_486 NPD12_487 PF01909 Nucleotidyltransferase domain NPD12_488 PF03788 NPD12_488 NPD12_489 PF04172 NPD12_489 NPD12_491 PF04055 Radical SAM superfamily NPD12_492 PF08903 Domain of unknown function (DUF1846) NPD12_493 PF17248 NPD12_493 NPD12_495 PF04647 NPD12_495 NPD12_497 PF00990 GGDEF domain NPD12_497 PF01966 HD domain NPD12_498 PF13302 Acetyltransferase (GNAT) domain NPD12_5 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPD12_5 PF03819 MazG nucleotide pyrophosphohydrolase domain NPD12_50 PF04055 Radical SAM superfamily NPD12_500 PF00512 His Kinase A (phospho-acceptor) domain NPD12_500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_500 PF13188 PAS domain NPD12_502 PF04647 NPD12_502 NPD12_504 PF00512 His Kinase A (phospho-acceptor) domain NPD12_504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_505 PF01171 PP-loop family NPD12_506 PF01381 Helix-turn-helix NPD12_506 PF07883 Cupin domain NPD12_507 PF13520 Amino acid permease NPD12_508 PF00557 Metallopeptidase family M24 NPD12_508 PF01321 Creatinase/Prolidase N-terminal domain NPD12_509 PF00171 Aldehyde dehydrogenase family NPD12_509 PF00465 Iron-containing alcohol dehydrogenase NPD12_51 PF04055 Radical SAM superfamily NPD12_51 PF06968 Biotin and Thiamin Synthesis associated domain NPD12_510 PF10087 NPD12_510 NPD12_511 PF12672 NPD12_511 NPD12_512 PF11385 NPD12_512 NPD12_513 PF03984 NPD12_513 NPD12_514 PF01569 PAP2 superfamily NPD12_515 PF01522 Polysaccharide deacetylase NPD12_516 PF00072 Response regulator receiver domain NPD12_516 PF00486 Transcriptional regulatory protein, C terminal NPD12_517 PF00512 His Kinase A (phospho-acceptor) domain NPD12_517 PF00672 HAMP domain NPD12_517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_519 PF06962 Putative rRNA methylase NPD12_52 PF01926 50S ribosome-binding GTPase NPD12_520 PF09335 NPD12_520 NPD12_521 PF00563 EAL domain NPD12_521 PF00990 GGDEF domain NPD12_521 PF05228 NPD12_521 NPD12_522 PF12671 NPD12_522 NPD12_523 PF01554 MatE NPD12_524 PF01966 HD domain NPD12_525 PF00999 Sodium/hydrogen exchanger family NPD12_526 PF00266 Aminotransferase class-V NPD12_527 PF03601 NPD12_527 NPD12_528 PF14378 NPD12_528 NPD12_529 PF00072 Response regulator receiver domain NPD12_529 PF00486 Transcriptional regulatory protein, C terminal NPD12_53 PF00474 Sodium:solute symporter family NPD12_530 PF00512 His Kinase A (phospho-acceptor) domain NPD12_530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_531 PF00474 Sodium:solute symporter family NPD12_532 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NPD12_532 PF10531 SLBB domain NPD12_532 PF13187 4Fe-4S dicluster domain NPD12_532 PF13375 RnfC Barrel sandwich hybrid domain NPD12_533 PF03116 NPD12_533 NPD12_534 PF04205 FMN-binding domain NPD12_535 PF02508 NPD12_535 NPD12_536 PF02508 NPD12_536 NPD12_537 PF00037 4Fe-4S binding domain NPD12_537 PF04060 Putative Fe-S cluster NPD12_538 PF04122 NPD12_538 NPD12_539 PF07456 NPD12_539 NPD12_540 PF07009 Protein of unknown function (DUF1312) NPD12_541 PF02424 ApbE family NPD12_542 PF04122 NPD12_542 NPD12_543 PF04122 NPD12_543 NPD12_545 PF04122 NPD12_545 NPD12_545 PF13306 Leucine rich repeats (6 copies) NPD12_547 PF01757 NPD12_547 NPD12_548 PF16472 NPD12_548 NPD12_549 PF12849 PBP superfamily domain NPD12_55 PF00534 Glycosyl transferases group 1 NPD12_55 PF13439 Glycosyltransferase Family 4 NPD12_550 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_551 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_552 PF00005 ABC transporter NPD12_553 PF08282 haloacid dehalogenase-like hydrolase NPD12_554 PF13520 Amino acid permease NPD12_555 PF09580 NPD12_555 NPD12_557 PF01863 Protein of unknown function DUF45 NPD12_558 PF00436 Single-strand binding protein family NPD12_559 PF02659 NPD12_559 NPD12_56 PF02811 PHP domain NPD12_56 PF13263 PHP-associated NPD12_561 PF01475 Ferric uptake regulator family NPD12_562 PF01966 HD domain NPD12_563 PF01694 Rhomboid family NPD12_564 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_564 PF02743 Cache domain NPD12_565 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_565 PF01434 Peptidase family M41 NPD12_566 PF06803 NPD12_566 NPD12_567 PF00075 RNase H NPD12_569 PF12844 Helix-turn-helix domain NPD12_569 PF13181 Tetratricopeptide repeat NPD12_569 PF13424 Tetratricopeptide repeat NPD12_57 PF08761 dUTPase NPD12_570 PF12844 Helix-turn-helix domain NPD12_571 PF01965 DJ-1/PfpI family NPD12_572 PF11155 Domain of unknown function (DUF2935) NPD12_573 PF00004 ATPase family associated with various cellular activities (AAA) NPD12_573 PF02861 Clp amino terminal domain NPD12_573 PF07724 AAA domain (Cdc48 subfamily) NPD12_573 PF10431 C-terminal, D2-small domain, of ClpB protein NPD12_574 PF07685 CobB/CobQ-like glutamine amidotransferase domain NPD12_575 PF08245 Mur ligase middle domain NPD12_575 PF08353 NPD12_575 NPD12_576 PF01238 Phosphomannose isomerase type I NPD12_578 PF02673 NPD12_578 NPD12_58 PF04657 NPD12_58 NPD12_585 PF00753 Metallo-beta-lactamase superfamily NPD12_586 PF01553 Acyltransferase NPD12_587 PF00682 HMGL-like NPD12_588 PF00330 Aconitase family (aconitate hydratase) NPD12_588 PF00694 Aconitase C-terminal domain NPD12_589 PF00180 Isocitrate/isopropylmalate dehydrogenase NPD12_59 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_59 PF03466 LysR substrate binding domain NPD12_590 PF00005 ABC transporter NPD12_591 PF03553 NPD12_591 NPD12_592 PF04070 NPD12_592 NPD12_593 PF02261 Aspartate decarboxylase NPD12_594 PF02569 Pantoate-beta-alanine ligase NPD12_595 PF02548 Ketopantoate hydroxymethyltransferase NPD12_596 PF04257 Exodeoxyribonuclease V, gamma subunit NPD12_596 PF12705 PD-(D/E)XK nuclease superfamily NPD12_6 PF01943 NPD12_6 NPD12_6 PF14667 Polysaccharide biosynthesis C-terminal domain NPD12_60 PF00082 Subtilase family NPD12_600 PF00440 Bacterial regulatory proteins, tetR family NPD12_601 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPD12_602 PF00037 4Fe-4S binding domain NPD12_602 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_602 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPD12_603 PF01155 Hydrogenase expression/synthesis hypA family NPD12_606 PF00580 UvrD/REP helicase N-terminal domain NPD12_606 PF12705 PD-(D/E)XK nuclease superfamily NPD12_606 PF13361 UvrD-like helicase C-terminal domain NPD12_607 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_607 PF02743 Cache domain NPD12_608 PF01546 Peptidase family M20/M25/M40 NPD12_608 PF07687 Peptidase dimerisation domain NPD12_609 PF01734 Patatin-like phospholipase NPD12_61 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_61 PF03466 LysR substrate binding domain NPD12_610 PF00753 Metallo-beta-lactamase superfamily NPD12_611 PF12681 Glyoxalase-like domain NPD12_612 PF04122 NPD12_612 NPD12_612 PF16800 NPD12_612 NPD12_613 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_614 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPD12_615 PF13649 Methyltransferase domain NPD12_616 PF00563 EAL domain NPD12_616 PF08668 HDOD domain NPD12_617 PF02581 Thiamine monophosphate synthase/TENI NPD12_618 PF02110 Hydroxyethylthiazole kinase family NPD12_619 PF08543 Phosphomethylpyrimidine kinase NPD12_62 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPD12_62 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPD12_620 PF01820 D-ala D-ala ligase N-terminus NPD12_620 PF07478 D-ala D-ala ligase C-terminus NPD12_621 PF13458 Periplasmic binding protein NPD12_622 PF02653 NPD12_622 NPD12_623 PF02653 NPD12_623 NPD12_624 PF00005 ABC transporter NPD12_624 PF12399 Branched-chain amino acid ATP-binding cassette transporter NPD12_625 PF00005 ABC transporter NPD12_626 PF02596 NPD12_626 NPD12_627 PF06738 NPD12_627 NPD12_628 PF12821 NPD12_628 NPD12_629 PF00155 Aminotransferase class I and II NPD12_629 PF00392 Bacterial regulatory proteins, gntR family NPD12_63 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NPD12_630 PF04011 LemA family NPD12_631 PF04536 TLP18 NPD12_632 PF00293 NUDIX domain NPD12_634 PF12822 Protein of unknown function (DUF3816) NPD12_635 PF13847 Methyltransferase domain NPD12_636 PF13443 Cro/C1-type HTH DNA-binding domain NPD12_637 PF11188 NPD12_637 NPD12_638 PF00149 Calcineurin-like phosphoesterase NPD12_638 PF12320 Type 5 capsule protein repressor C-terminal domain NPD12_639 PF13476 AAA domain NPD12_639 PF13558 Putative exonuclease SbcCD, C subunit NPD12_64 PF01039 Carboxyl transferase domain NPD12_640 PF00293 NUDIX domain NPD12_641 PF02588 NPD12_641 NPD12_641 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_642 PF07561 NPD12_642 NPD12_643 PF01022 Bacterial regulatory protein, arsR family NPD12_644 PF00122 E1-E2 ATPase NPD12_644 PF00403 Heavy-metal-associated domain NPD12_644 PF00702 haloacid dehalogenase-like hydrolase NPD12_646 PF00877 NlpC/P60 family NPD12_649 PF11155 Domain of unknown function (DUF2935) NPD12_65 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain NPD12_65 PF02785 Biotin carboxylase C-terminal domain NPD12_65 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPD12_650 PF02562 PhoH-like protein NPD12_650 PF13638 PIN domain NPD12_651 PF09992 Predicted periplasmic protein (DUF2233) NPD12_654 PF00881 Nitroreductase family NPD12_656 PF02624 YcaO-like family NPD12_657 PF02517 CAAX protease self-immunity NPD12_659 PF00005 ABC transporter NPD12_66 PF07977 FabA-like domain NPD12_660 PF12698 ABC-2 family transporter protein NPD12_661 PF12698 ABC-2 family transporter protein NPD12_662 PF02163 Peptidase family M50 NPD12_664 PF03600 Citrate transporter NPD12_666 PF02390 Putative methyltransferase NPD12_667 PF13031 NPD12_667 NPD12_668 PF00578 AhpC/TSA family NPD12_669 PF13561 Enoyl-(Acyl carrier protein) reductase NPD12_67 PF00364 Biotin-requiring enzyme NPD12_670 PF00072 Response regulator receiver domain NPD12_671 PF00877 NlpC/P60 family NPD12_671 PF02389 NPD12_671 NPD12_671 PF05257 CHAP domain NPD12_671 PF08239 Bacterial SH3 domain NPD12_672 PF12146 Putative lysophospholipase NPD12_673 PF00072 Response regulator receiver domain NPD12_673 PF01627 Hpt domain NPD12_673 PF08448 PAS fold NPD12_674 PF01966 HD domain NPD12_675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_675 PF02743 Cache domain NPD12_676 PF00072 Response regulator receiver domain NPD12_676 PF10057 NPD12_676 NPD12_677 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPD12_677 PF02403 Seryl-tRNA synthetase N-terminal domain NPD12_678 PF06733 DEAD_2 NPD12_678 PF12705 PD-(D/E)XK nuclease superfamily NPD12_678 PF13307 Helicase C-terminal domain NPD12_68 PF00109 Beta-ketoacyl synthase, N-terminal domain NPD12_68 PF02801 Beta-ketoacyl synthase, C-terminal domain NPD12_680 PF00392 Bacterial regulatory proteins, gntR family NPD12_680 PF02080 TrkA-C domain NPD12_681 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NPD12_681 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NPD12_682 PF06874 NPD12_682 NPD12_684 PF01814 Hemerythrin HHE cation binding domain NPD12_687 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NPD12_688 PF00753 Metallo-beta-lactamase superfamily NPD12_689 PF04055 Radical SAM superfamily NPD12_689 PF13186 Iron-sulfur cluster-binding domain NPD12_689 PF13394 4Fe-4S single cluster domain NPD12_69 PF13561 Enoyl-(Acyl carrier protein) reductase NPD12_690 PF04055 Radical SAM superfamily NPD12_690 PF13353 4Fe-4S single cluster domain NPD12_693 PF00082 Subtilase family NPD12_694 PF00005 ABC transporter NPD12_694 PF00664 ABC transporter transmembrane region NPD12_695 PF00072 Response regulator receiver domain NPD12_695 PF00486 Transcriptional regulatory protein, C terminal NPD12_696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_697 PF00005 ABC transporter NPD12_698 PF02687 NPD12_698 NPD12_7 PF04014 Antidote-toxin recognition MazE NPD12_7 PF15714 NPD12_7 NPD12_70 PF00698 Acyl transferase domain NPD12_700 PF13520 Amino acid permease NPD12_701 PF01037 AsnC family NPD12_701 PF13404 AsnC-type helix-turn-helix domain NPD12_703 PF13520 Amino acid permease NPD12_704 PF13520 Amino acid permease NPD12_705 PF00132 Bacterial transferase hexapeptide (six repeats) NPD12_706 PF00753 Metallo-beta-lactamase superfamily NPD12_707 PF00122 E1-E2 ATPase NPD12_707 PF00689 Cation transporting ATPase, C-terminus NPD12_707 PF00690 Cation transporter/ATPase, N-terminus NPD12_707 PF00702 haloacid dehalogenase-like hydrolase NPD12_708 PF02417 NPD12_708 NPD12_709 PF02417 NPD12_709 NPD12_71 PF03060 Nitronate monooxygenase NPD12_710 PF02452 PemK-like protein NPD12_711 PF03885 Protein of unknown function (DUF327) NPD12_712 PF00795 Carbon-nitrogen hydrolase NPD12_712 PF02540 NAD synthase NPD12_713 PF01957 NfeD-like C-terminal, partner-binding NPD12_714 PF01145 SPFH domain / Band 7 family NPD12_715 PF00557 Metallopeptidase family M24 NPD12_715 PF05195 Aminopeptidase P, N-terminal domain NPD12_717 PF01381 Helix-turn-helix NPD12_718 PF13508 Acetyltransferase (GNAT) domain NPD12_719 PF04324 BFD-like [2Fe-2S] binding domain NPD12_72 PF00550 Phosphopantetheine attachment site NPD12_720 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NPD12_722 PF02554 NPD12_722 NPD12_722 PF13722 NPD12_722 NPD12_723 PF09922 Cell wall-active antibiotics response protein (DUF2154) NPD12_724 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_724 PF02743 Cache domain NPD12_725 PF00005 ABC transporter NPD12_726 PF01741 Large-conductance mechanosensitive channel, MscL NPD12_727 PF09515 Thiamine transporter protein (Thia_YuaJ) NPD12_728 PF02810 SEC-C motif NPD12_73 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPD12_73 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_730 PF00392 Bacterial regulatory proteins, gntR family NPD12_731 PF00005 ABC transporter NPD12_734 PF00672 HAMP domain NPD12_736 PF00005 ABC transporter NPD12_736 PF08402 TOBE domain NPD12_737 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_738 PF00528 Binding-protein-dependent transport system inner membrane component NPD12_738 PF13416 Bacterial extracellular solute-binding protein NPD12_739 PF02311 AraC-like ligand binding domain NPD12_739 PF12833 Helix-turn-helix domain NPD12_74 PF01047 MarR family NPD12_740 PF00375 Sodium:dicarboxylate symporter family NPD12_742 PF14317 NPD12_742 NPD12_743 PF14317 NPD12_743 NPD12_744 PF01471 Putative peptidoglycan binding domain NPD12_744 PF08924 Domain of unknown function (DUF1906) NPD12_745 PF12645 NPD12_745 NPD12_746 PF10960 NPD12_746 NPD12_748 PF02517 CAAX protease self-immunity NPD12_749 PF00805 Pentapeptide repeats (8 copies) NPD12_75 PF03060 Nitronate monooxygenase NPD12_750 PF01588 Putative tRNA binding domain NPD12_751 PF01381 Helix-turn-helix NPD12_753 PF10502 Signal peptidase, peptidase S26 NPD12_754 PF00072 Response regulator receiver domain NPD12_754 PF04397 LytTr DNA-binding domain NPD12_759 PF04055 Radical SAM superfamily NPD12_759 PF13353 4Fe-4S single cluster domain NPD12_76 PF01551 Peptidase family M23 NPD12_760 PF01433 Peptidase family M1 NPD12_762 PF00005 ABC transporter NPD12_762 PF00664 ABC transporter transmembrane region NPD12_764 PF00583 Acetyltransferase (GNAT) family NPD12_765 PF02687 NPD12_765 NPD12_766 PF00005 ABC transporter NPD12_767 PF00583 Acetyltransferase (GNAT) family NPD12_77 PF07261 Replication initiation and membrane attachment NPD12_770 PF02645 Uncharacterised protein, DegV family COG1307 NPD12_771 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPD12_772 PF00884 Sulfatase NPD12_773 PF00158 Sigma-54 interaction domain NPD12_773 PF02954 Bacterial regulatory protein, Fis family NPD12_774 PF01773 Na+ dependent nucleoside transporter N-terminus NPD12_774 PF07662 Na+ dependent nucleoside transporter C-terminus NPD12_774 PF07670 Nucleoside recognition NPD12_775 PF00152 tRNA synthetases class II (D, K and N) NPD12_775 PF01336 OB-fold nucleic acid binding domain NPD12_776 PF03551 Transcriptional regulator PadR-like family NPD12_777 PF11193 NPD12_777 NPD12_778 PF04397 LytTr DNA-binding domain NPD12_78 PF01695 IstB-like ATP binding protein NPD12_780 PF12833 Helix-turn-helix domain NPD12_780 PF14526 Integron-associated effector binding protein NPD12_781 PF02517 CAAX protease self-immunity NPD12_782 PF01381 Helix-turn-helix NPD12_783 PF07532 NPD12_783 NPD12_784 PF00072 Response regulator receiver domain NPD12_784 PF00486 Transcriptional regulatory protein, C terminal NPD12_785 PF00512 His Kinase A (phospho-acceptor) domain NPD12_785 PF00672 HAMP domain NPD12_785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_786 PF02557 D-alanyl-D-alanine carboxypeptidase NPD12_787 PF00072 Response regulator receiver domain NPD12_787 PF00486 Transcriptional regulatory protein, C terminal NPD12_788 PF00512 His Kinase A (phospho-acceptor) domain NPD12_788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_789 PF13303 NPD12_789 NPD12_790 PF00072 Response regulator receiver domain NPD12_790 PF08664 NPD12_790 NPD12_791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_792 PF01098 NPD12_792 NPD12_793 PF02353 Mycolic acid cyclopropane synthetase NPD12_794 PF01022 Bacterial regulatory protein, arsR family NPD12_795 PF00005 ABC transporter NPD12_795 PF00664 ABC transporter transmembrane region NPD12_796 PF00302 Chloramphenicol acetyltransferase NPD12_797 PF00440 Bacterial regulatory proteins, tetR family NPD12_798 PF00583 Acetyltransferase (GNAT) family NPD12_799 PF01588 Putative tRNA binding domain NPD12_8 PF13145 PPIC-type PPIASE domain NPD12_8 PF13624 SurA N-terminal domain NPD12_800 PF02311 AraC-like ligand binding domain NPD12_800 PF12833 Helix-turn-helix domain NPD12_801 PF01381 Helix-turn-helix NPD12_801 PF07883 Cupin domain NPD12_803 PF04397 LytTr DNA-binding domain NPD12_804 PF00005 ABC transporter NPD12_805 PF12698 ABC-2 family transporter protein NPD12_806 PF01546 Peptidase family M20/M25/M40 NPD12_806 PF07687 Peptidase dimerisation domain NPD12_807 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_808 PF00488 MutS domain V NPD12_809 PF14198 NPD12_809 NPD12_810 PF12900 Pyridoxamine 5'-phosphate oxidase NPD12_811 PF14898 NPD12_811 NPD12_812 PF12900 Pyridoxamine 5'-phosphate oxidase NPD12_814 PF00155 Aminotransferase class I and II NPD12_814 PF00392 Bacterial regulatory proteins, gntR family NPD12_815 PF03992 Antibiotic biosynthesis monooxygenase NPD12_816 PF00270 DEAD/DEAH box helicase NPD12_816 PF00271 Helicase conserved C-terminal domain NPD12_817 PF02915 Rubrerythrin NPD12_819 PF07690 Major Facilitator Superfamily NPD12_820 PF01996 F420-0:Gamma-glutamyl ligase NPD12_821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPD12_821 PF03466 LysR substrate binding domain NPD12_822 PF08011 NPD12_822 NPD12_822 PF09820 NPD12_822 NPD12_823 PF11796 NPD12_823 NPD12_824 PF09664 NPD12_824 NPD12_825 PF02698 DUF218 domain NPD12_826 PF00271 Helicase conserved C-terminal domain NPD12_826 PF04851 Type III restriction enzyme, res subunit NPD12_826 PF11907 NPD12_826 NPD12_826 PF13091 PLD-like domain NPD12_827 PF00293 NUDIX domain NPD12_828 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_832 PF00874 PRD domain NPD12_832 PF03123 CAT RNA binding domain NPD12_833 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPD12_833 PF00367 phosphotransferase system, EIIB NPD12_833 PF02378 Phosphotransferase system, EIIC NPD12_834 PF02811 PHP domain NPD12_835 PF00027 Cyclic nucleotide-binding domain NPD12_835 PF13545 Crp-like helix-turn-helix domain NPD12_836 PF00258 Flavodoxin NPD12_837 PF01814 Hemerythrin HHE cation binding domain NPD12_837 PF04405 NPD12_837 NPD12_838 PF01814 Hemerythrin HHE cation binding domain NPD12_838 PF04282 NPD12_838 NPD12_843 PF00753 Metallo-beta-lactamase superfamily NPD12_844 PF02653 NPD12_844 NPD12_845 PF00005 ABC transporter NPD12_846 PF04392 ABC transporter substrate binding protein NPD12_847 PF03965 Penicillinase repressor NPD12_848 PF05569 BlaR1 peptidase M56 NPD12_852 PF04542 Sigma-70 region 2 NPD12_853 PF01207 Dihydrouridine synthase (Dus) NPD12_854 PF01272 Transcription elongation factor, GreA/GreB, C-term NPD12_854 PF03449 Transcription elongation factor, N-terminal NPD12_856 PF02384 N-6 DNA Methylase NPD12_856 PF12161 HsdM N-terminal domain NPD12_857 PF01420 Type I restriction modification DNA specificity domain NPD12_858 PF14261 NPD12_858 NPD12_859 PF00271 Helicase conserved C-terminal domain NPD12_859 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NPD12_859 PF04851 Type III restriction enzyme, res subunit NPD12_859 PF08463 NPD12_859 NPD12_859 PF13643 NPD12_859 NPD12_860 PF13289 NPD12_860 NPD12_861 PF12833 Helix-turn-helix domain NPD12_862 PF01497 Periplasmic binding protein NPD12_863 PF01032 FecCD transport family NPD12_864 PF01032 FecCD transport family NPD12_865 PF00005 ABC transporter NPD12_866 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NPD12_867 PF00148 Nitrogenase component 1 type Oxidoreductase NPD12_868 PF00148 Nitrogenase component 1 type Oxidoreductase NPD12_869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_869 PF02743 Cache domain NPD12_870 PF14199 NPD12_870 NPD12_871 PF01571 Aminomethyltransferase folate-binding domain NPD12_871 PF08669 Glycine cleavage T-protein C-terminal barrel domain NPD12_872 PF01597 Glycine cleavage H-protein NPD12_873 PF02347 Glycine cleavage system P-protein NPD12_874 PF02347 Glycine cleavage system P-protein NPD12_875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPD12_875 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPD12_876 PF03099 Biotin/lipoate A/B protein ligase family NPD12_876 PF10437 Bacterial lipoate protein ligase C-terminus NPD12_878 PF13302 Acetyltransferase (GNAT) domain NPD12_880 PF00872 NPD12_880 NPD12_881 PF00072 Response regulator receiver domain NPD12_881 PF00486 Transcriptional regulatory protein, C terminal NPD12_882 PF00512 His Kinase A (phospho-acceptor) domain NPD12_882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_883 PF00005 ABC transporter NPD12_884 PF02687 NPD12_884 NPD12_885 PF01047 MarR family NPD12_886 PF03358 NADPH-dependent FMN reductase NPD12_887 PF06445 GyrI-like small molecule binding domain NPD12_887 PF12833 Helix-turn-helix domain NPD12_890 PF06414 Zeta toxin NPD12_891 PF01381 Helix-turn-helix NPD12_893 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPD12_894 PF00376 MerR family regulatory protein NPD12_894 PF13411 MerR HTH family regulatory protein NPD12_895 PF00005 ABC transporter NPD12_896 PF01061 NPD12_896 NPD12_899 PF00005 ABC transporter NPD12_9 PF00270 DEAD/DEAH box helicase NPD12_9 PF00271 Helicase conserved C-terminal domain NPD12_9 PF02559 CarD-like/TRCF domain NPD12_9 PF03461 TRCF domain NPD12_90 PF03618 NPD12_90 NPD12_900 PF13245 Part of AAA domain NPD12_900 PF13361 UvrD-like helicase C-terminal domain NPD12_900 PF13538 UvrD-like helicase C-terminal domain NPD12_901 PF07505 NPD12_901 NPD12_903 PF06445 GyrI-like small molecule binding domain NPD12_903 PF12833 Helix-turn-helix domain NPD12_904 PF00892 EamA-like transporter family NPD12_905 PF04994 TfoX C-terminal domain NPD12_906 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPD12_906 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPD12_907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPD12_908 PF08765 Mor transcription activator family NPD12_909 PF00005 ABC transporter NPD12_909 PF12848 ABC transporter NPD12_91 PF13380 CoA binding domain NPD12_910 PF01965 DJ-1/PfpI family NPD12_912 PF00291 Pyridoxal-phosphate dependent enzyme NPD12_913 PF02664 S-Ribosylhomocysteinase (LuxS) NPD12_914 PF01053 Cys/Met metabolism PLP-dependent enzyme NPD12_915 PF08241 Methyltransferase domain NPD12_916 PF00704 Glycosyl hydrolases family 18 NPD12_916 PF06483 NPD12_916 NPD12_917 PF08241 Methyltransferase domain NPD12_918 PF06445 GyrI-like small molecule binding domain NPD12_918 PF12833 Helix-turn-helix domain NPD12_919 PF00403 Heavy-metal-associated domain NPD12_92 PF03486 HI0933-like protein NPD12_921 PF06172 Cupin superfamily (DUF985) NPD12_922 PF06114 Domain of unknown function (DUF955) NPD12_923 PF01381 Helix-turn-helix NPD12_924 PF01381 Helix-turn-helix NPD12_925 PF07261 Replication initiation and membrane attachment NPD12_926 PF04542 Sigma-70 region 2 NPD12_927 PF00149 Calcineurin-like phosphoesterase NPD12_928 PF07872 NPD12_928 NPD12_929 PF11148 NPD12_929 NPD12_93 PF01643 Acyl-ACP thioesterase NPD12_930 PF01471 Putative peptidoglycan binding domain NPD12_930 PF01510 N-acetylmuramoyl-L-alanine amidase NPD12_931 PF13529 Peptidase_C39 like family NPD12_934 PF08239 Bacterial SH3 domain NPD12_935 PF14196 NPD12_935 NPD12_936 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPD12_937 PF01022 Bacterial regulatory protein, arsR family NPD12_938 PF06953 Arsenical resistance operon trans-acting repressor ArsD NPD12_939 PF02374 Anion-transporting ATPase NPD12_94 PF08984 Domain of unknown function (DUF1858) NPD12_940 PF01758 Sodium Bile acid symporter family NPD12_941 PF13783 NPD12_941 NPD12_942 PF13847 Methyltransferase domain NPD12_943 PF06597 NPD12_943 NPD12_944 PF06597 NPD12_944 NPD12_946 PF08281 Sigma-70, region 4 NPD12_947 PF06597 NPD12_947 NPD12_948 PF01742 Clostridial neurotoxin zinc protease NPD12_948 PF07953 Clostridium neurotoxin, N-terminal receptor binding NPD12_948 PF08470 Nontoxic nonhaemagglutinin C-terminal NPD12_949 PF01742 Clostridial neurotoxin zinc protease NPD12_949 PF07951 Clostridium neurotoxin, C-terminal receptor binding NPD12_949 PF07952 Clostridium neurotoxin, Translocation domain NPD12_949 PF07953 Clostridium neurotoxin, N-terminal receptor binding NPD12_95 PF00709 Adenylosuccinate synthetase NPD12_950 PF01183 Glycosyl hydrolases family 25 NPD12_950 PF01471 Putative peptidoglycan binding domain NPD12_953 PF00303 Thymidylate synthase NPD12_954 PF13649 Methyltransferase domain NPD12_955 PF01547 Bacterial extracellular solute-binding protein NPD12_956 PF08543 Phosphomethylpyrimidine kinase NPD12_958 PF06695 NPD12_958 NPD12_959 PF00005 ABC transporter NPD12_961 PF00072 Response regulator receiver domain NPD12_961 PF00486 Transcriptional regulatory protein, C terminal NPD12_962 PF00005 ABC transporter NPD12_963 PF12730 NPD12_963 NPD12_964 PF12833 Helix-turn-helix domain NPD12_964 PF14526 Integron-associated effector binding protein NPD12_965 PF00512 His Kinase A (phospho-acceptor) domain NPD12_965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_966 PF13170 NPD12_966 NPD12_968 PF00005 ABC transporter NPD12_969 PF02687 NPD12_969 NPD12_97 PF11213 Protein of unknown function (DUF3006) NPD12_971 PF00072 Response regulator receiver domain NPD12_971 PF00486 Transcriptional regulatory protein, C terminal NPD12_972 PF00512 His Kinase A (phospho-acceptor) domain NPD12_972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPD12_973 PF02589 Uncharacterised ACR, YkgG family COG1556 NPD12_974 PF01497 Periplasmic binding protein NPD12_975 PF01032 FecCD transport family NPD12_976 PF01032 FecCD transport family NPD12_977 PF00005 ABC transporter NPD12_978 PF08141 NPD12_978 NPD12_979 PF07155 ECF-type riboflavin transporter, S component NPD12_98 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPD12_98 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPD12_98 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPD12_98 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPD12_980 PF01113 Dihydrodipicolinate reductase, N-terminus NPD12_980 PF05173 Dihydrodipicolinate reductase, C-terminus NPD12_981 PF00581 Rhodanese-like domain NPD12_988 PF01527 Transposase NPD12_989 PF03505 Clostridium enterotoxin NPD12_99 PF00772 DnaB-like helicase N terminal domain NPD12_99 PF03796 DnaB-like helicase C terminal domain NPD12_990 PF05588 Clostridium botulinum HA-17 protein NPD12_991 PF14200 Ricin-type beta-trefoil lectin domain-like NPD12_992 PF08281 Sigma-70, region 4 NPD12_993 PF01742 Clostridial neurotoxin zinc protease NPD12_993 PF07953 Clostridium neurotoxin, N-terminal receptor binding NPD12_993 PF08470 Nontoxic nonhaemagglutinin C-terminal NPD12_999 PF01979 Amidohydrolase family