locus-tag class description CLSA_c00010 PF00308 Bacterial dnaA protein CLSA_c00010 PF08299 Bacterial dnaA protein helix-turn-helix CLSA_c00010 PF11638 DnaA N-terminal domain CLSA_c00020 PF02768 DNA polymerase III beta subunit, C-terminal domain CLSA_c00020 PF02767 DNA polymerase III beta subunit, central domain CLSA_c00020 PF00712 DNA polymerase III beta subunit, N-terminal domain CLSA_c00040 PF02463 RecF/RecN/SMC N terminal domain CLSA_c00060 PF01751 Toprim domain CLSA_c00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c00060 PF00204 DNA gyrase B CLSA_c00060 PF00986 DNA gyrase B subunit, carboxyl terminus CLSA_c00070 PF00521 DNA gyrase/topoisomerase IV, subunit A CLSA_c00070 PF03989 DNA gyrase C-terminal domain, beta-propeller CLSA_c00140 PF02829 3H domain CLSA_c00140 PF08279 HTH domain CLSA_c00150 PF01266 FAD dependent oxidoreductase CLSA_c00170 PF02403 Seryl-tRNA synthetase N-terminal domain CLSA_c00170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLSA_c00230 PF12705 PD-(D/E)XK nuclease superfamily CLSA_c00240 PF13361 UvrD-like helicase C-terminal domain CLSA_c00240 PF00580 UvrD/REP helicase N-terminal domain CLSA_c00240 PF12705 PD-(D/E)XK nuclease superfamily CLSA_c00250 PF03734 L,D-transpeptidase catalytic domain CLSA_c00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c00270 PF18698 Histidine kinase sensor domain CLSA_c00270 PF00672 HAMP domain CLSA_c00270 PF00989 PAS fold CLSA_c00270 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c00290 PF06445 GyrI-like small molecule binding domain CLSA_c00290 PF13411 MerR HTH family regulatory protein CLSA_c00320 PF02666 Phosphatidylserine decarboxylase CLSA_c00330 PF18665 Tetracyclin repressor-like, C-terminal domain CLSA_c00330 PF00440 Bacterial regulatory proteins, tetR family CLSA_c00340 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLSA_c00340 PF02256 Iron hydrogenase small subunit CLSA_c00340 PF12838 4Fe-4S dicluster domain CLSA_c00350 PF00005 ABC transporter CLSA_c00350 PF12848 ABC transporter CLSA_c00380 PF03006 Haemolysin-III related CLSA_c00390 PF00696 Amino acid kinase family CLSA_c00400 PF00171 Aldehyde dehydrogenase family CLSA_c00410 PF02142 MGS-like domain CLSA_c00430 PF00117 Glutamine amidotransferase class-I CLSA_c00430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLSA_c00440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLSA_c00440 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLSA_c00440 PF02142 MGS-like domain CLSA_c00470 PF01966 HD domain CLSA_c00470 PF11871 Domain of unknown function (DUF3391) CLSA_c00480 PF01177 Asp/Glu/Hydantoin racemase CLSA_c00490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLSA_c00520 PF06280 Fn3-like domain CLSA_c00520 PF02225 PA domain CLSA_c00520 PF00082 Subtilase family CLSA_c00550 PF04055 Radical SAM superfamily CLSA_c00550 PF16199 Radical_SAM C-terminal domain CLSA_c00560 PF04029 2-phosphosulpholactate phosphatase CLSA_c00580 PF00486 Transcriptional regulatory protein, C terminal CLSA_c00580 PF00072 Response regulator receiver domain CLSA_c00590 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c00590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c00620 PF08264 Anticodon-binding domain of tRNA CLSA_c00620 PF00133 tRNA synthetases class I (I, L, M and V) CLSA_c00630 PF00356 Bacterial regulatory proteins, lacI family CLSA_c00640 PF01047 MarR family CLSA_c00670 PF07670 Nucleoside recognition CLSA_c00680 PF07670 Nucleoside recognition CLSA_c00690 PF00557 Metallopeptidase family M24 CLSA_c00690 PF05195 Aminopeptidase P, N-terminal domain CLSA_c00710 PF03109 ABC1 family CLSA_c00720 PF01588 Putative tRNA binding domain CLSA_c00720 PF09334 tRNA synthetases class I (M) CLSA_c00730 PF09334 tRNA synthetases class I (M) CLSA_c00730 PF08264 Anticodon-binding domain of tRNA CLSA_c00740 PF01026 TatD related DNase CLSA_c00750 PF07501 G5 domain CLSA_c00750 PF06725 3D domain CLSA_c00750 PF03990 G5-linked-Ubiquitin-like domain CLSA_c00760 PF13662 Toprim domain CLSA_c00760 PF13331 Domain of unknown function (DUF4093) CLSA_c00770 PF00398 Ribosomal RNA adenine dimethylase CLSA_c00800 PF01790 Prolipoprotein diacylglyceryl transferase CLSA_c00820 PF10609 NUBPL iron-transfer P-loop NTPase CLSA_c00850 PF02645 Uncharacterised protein, DegV family COG1307 CLSA_c00860 PF13597 Anaerobic ribonucleoside-triphosphate reductase CLSA_c00860 PF03477 ATP cone domain CLSA_c00870 PF00682 HMGL-like CLSA_c00880 PF00330 Aconitase family (aconitate hydratase) CLSA_c00910 PF02245 Methylpurine-DNA glycosylase (MPG) CLSA_c00920 PF16363 GDP-mannose 4,6 dehydratase CLSA_c00940 PF00535 Glycosyl transferase family 2 CLSA_c00950 PF00535 Glycosyl transferase family 2 CLSA_c00960 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CLSA_c00970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c00970 PF03466 LysR substrate binding domain CLSA_c00980 PF03313 Serine dehydratase alpha chain CLSA_c00990 PF00872 Transposase, Mutator family CLSA_c01000 PF00152 tRNA synthetases class II (D, K and N) CLSA_c01020 PF00557 Metallopeptidase family M24 CLSA_c01020 PF01321 Creatinase/Prolidase N-terminal domain CLSA_c01030 PF01225 Mur ligase family, catalytic domain CLSA_c01030 PF02875 Mur ligase family, glutamate ligase domain CLSA_c01030 PF08245 Mur ligase middle domain CLSA_c01040 PF00156 Phosphoribosyl transferase domain CLSA_c01040 PF09182 Bacterial purine repressor, N-terminal CLSA_c01050 PF04026 SpoVG CLSA_c01060 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c01060 PF00483 Nucleotidyl transferase CLSA_c01070 PF14572 Phosphoribosyl synthetase-associated domain CLSA_c01070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLSA_c01080 PF00486 Transcriptional regulatory protein, C terminal CLSA_c01080 PF00072 Response regulator receiver domain CLSA_c01090 PF00672 HAMP domain CLSA_c01090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c01090 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c01100 PF01195 Peptidyl-tRNA hydrolase CLSA_c01110 PF17757 UvrB interaction domain CLSA_c01110 PF00270 DEAD/DEAH box helicase CLSA_c01110 PF03461 TRCF domain CLSA_c01110 PF00271 Helicase conserved C-terminal domain CLSA_c01110 PF02559 CarD-like/TRCF domain CLSA_c01120 PF13145 PPIC-type PPIASE domain CLSA_c01140 PF00664 ABC transporter transmembrane region CLSA_c01140 PF03412 Peptidase C39 family CLSA_c01140 PF00005 ABC transporter CLSA_c01160 PF15714 Stage V sporulation protein T C-terminal, transcription factor CLSA_c01160 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLSA_c01170 PF01943 Polysaccharide biosynthesis protein CLSA_c01170 PF14667 Polysaccharide biosynthesis C-terminal domain CLSA_c01180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c01180 PF03819 MazG nucleotide pyrophosphohydrolase domain CLSA_c01190 PF00216 Bacterial DNA-binding protein CLSA_c01200 PF01479 S4 domain CLSA_c01240 PF00575 S1 RNA binding domain CLSA_c01350 PF07228 Stage II sporulation protein E (SpoIIE) CLSA_c01360 PF11734 TilS substrate C-terminal domain CLSA_c01360 PF01171 PP-loop family CLSA_c01380 PF01434 Peptidase family M41 CLSA_c01380 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c01380 PF17862 AAA+ lid domain CLSA_c01390 PF01268 Formate--tetrahydrofolate ligase CLSA_c01400 PF03309 Type III pantothenate kinase CLSA_c01410 PF01207 Dihydrouridine synthase (Dus) CLSA_c01420 PF01272 Transcription elongation factor, GreA/GreB, C-term CLSA_c01420 PF03449 Transcription elongation factor, N-terminal CLSA_c01430 PF01336 OB-fold nucleic acid binding domain CLSA_c01430 PF00152 tRNA synthetases class II (D, K and N) CLSA_c01470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLSA_c01470 PF03129 Anticodon binding domain CLSA_c01480 PF08245 Mur ligase middle domain CLSA_c01570 PF00083 Sugar (and other) transporter CLSA_c01610 PF02223 Thymidylate kinase CLSA_c01620 PF06153 Cyclic-di-AMP receptor CLSA_c01640 PF04468 PSP1 C-terminal conserved region CLSA_c01660 PF12838 4Fe-4S dicluster domain CLSA_c01680 PF17727 CtsR C-terminal dimerization domain CLSA_c01680 PF05848 CtsR N-terminal HTH domain CLSA_c01690 PF02151 UvrB/uvrC motif CLSA_c01700 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CLSA_c01710 PF17871 AAA lid domain CLSA_c01710 PF07724 AAA domain (Cdc48 subfamily) CLSA_c01710 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c01710 PF10431 C-terminal, D2-small domain, of ClpB protein CLSA_c01710 PF02861 Clp amino terminal domain, pathogenicity island component CLSA_c01720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c01730 PF00462 Glutaredoxin CLSA_c01740 PF18073 Rubredoxin metal binding domain CLSA_c01750 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLSA_c01750 PF10635 DisA bacterial checkpoint controller linker region CLSA_c01780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLSA_c01790 PF03129 Anticodon binding domain CLSA_c01790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLSA_c01790 PF04073 Aminoacyl-tRNA editing domain CLSA_c01800 PF09190 DALR domain CLSA_c01800 PF01406 tRNA synthetases class I (C) catalytic domain CLSA_c01810 PF00636 Ribonuclease III domain CLSA_c01820 PF00588 SpoU rRNA Methylase family CLSA_c01820 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLSA_c01840 PF04542 Sigma-70 region 2 CLSA_c01840 PF08281 Sigma-70, region 4 CLSA_c01860 PF03143 Elongation factor Tu C-terminal domain CLSA_c01860 PF03144 Elongation factor Tu domain 2 CLSA_c01860 PF00009 Elongation factor Tu GTP binding domain CLSA_c01870 PF00471 Ribosomal protein L33 CLSA_c01880 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CLSA_c01890 PF02357 Transcription termination factor nusG CLSA_c01890 PF00467 KOW motif CLSA_c01900 PF00298 Ribosomal protein L11, RNA binding domain CLSA_c01900 PF03946 Ribosomal protein L11, N-terminal domain CLSA_c01910 PF00687 Ribosomal protein L1p/L10e family CLSA_c01920 PF00466 Ribosomal protein L10 CLSA_c01930 PF16320 Ribosomal protein L7/L12 dimerisation domain CLSA_c01930 PF00542 Ribosomal protein L7/L12 C-terminal domain CLSA_c01940 PF04563 RNA polymerase beta subunit CLSA_c01940 PF04565 RNA polymerase Rpb2, domain 3 CLSA_c01940 PF00562 RNA polymerase Rpb2, domain 6 CLSA_c01940 PF04560 RNA polymerase Rpb2, domain 7 CLSA_c01940 PF04561 RNA polymerase Rpb2, domain 2 CLSA_c01940 PF10385 RNA polymerase beta subunit external 1 domain CLSA_c01950 PF04983 RNA polymerase Rpb1, domain 3 CLSA_c01950 PF05000 RNA polymerase Rpb1, domain 4 CLSA_c01950 PF04998 RNA polymerase Rpb1, domain 5 CLSA_c01950 PF04997 RNA polymerase Rpb1, domain 1 CLSA_c01950 PF00623 RNA polymerase Rpb1, domain 2 CLSA_c01960 PF00164 Ribosomal protein S12/S23 CLSA_c01970 PF00177 Ribosomal protein S7p/S5e CLSA_c01980 PF14492 Elongation Factor G, domain II CLSA_c01980 PF00679 Elongation factor G C-terminus CLSA_c01980 PF00009 Elongation factor Tu GTP binding domain CLSA_c01980 PF03144 Elongation factor Tu domain 2 CLSA_c01980 PF03764 Elongation factor G, domain IV CLSA_c01990 PF00009 Elongation factor Tu GTP binding domain CLSA_c01990 PF03144 Elongation factor Tu domain 2 CLSA_c01990 PF03143 Elongation factor Tu C-terminal domain CLSA_c02000 PF00338 Ribosomal protein S10p/S20e CLSA_c02010 PF00297 Ribosomal protein L3 CLSA_c02020 PF00573 Ribosomal protein L4/L1 family CLSA_c02030 PF00276 Ribosomal protein L23 CLSA_c02040 PF03947 Ribosomal Proteins L2, C-terminal domain CLSA_c02040 PF00181 Ribosomal Proteins L2, RNA binding domain CLSA_c02050 PF00203 Ribosomal protein S19 CLSA_c02060 PF00237 Ribosomal protein L22p/L17e CLSA_c02070 PF07650 KH domain CLSA_c02070 PF00189 Ribosomal protein S3, C-terminal domain CLSA_c02080 PF00252 Ribosomal protein L16p/L10e CLSA_c02090 PF00831 Ribosomal L29 protein CLSA_c02100 PF00366 Ribosomal protein S17 CLSA_c02120 PF00238 Ribosomal protein L14p/L23e CLSA_c02130 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLSA_c02130 PF00467 KOW motif CLSA_c02140 PF00281 Ribosomal protein L5 CLSA_c02140 PF00673 ribosomal L5P family C-terminus CLSA_c02150 PF00253 Ribosomal protein S14p/S29e CLSA_c02160 PF00410 Ribosomal protein S8 CLSA_c02170 PF00347 Ribosomal protein L6 CLSA_c02180 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLSA_c02190 PF00333 Ribosomal protein S5, N-terminal domain CLSA_c02190 PF03719 Ribosomal protein S5, C-terminal domain CLSA_c02200 PF00327 Ribosomal protein L30p/L7e CLSA_c02210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLSA_c02220 PF00344 SecY translocase CLSA_c02230 PF05191 Adenylate kinase, active site lid CLSA_c02240 PF00557 Metallopeptidase family M24 CLSA_c02260 PF01176 Translation initiation factor 1A / IF-1 CLSA_c02270 PF00444 Ribosomal protein L36 CLSA_c02280 PF00416 Ribosomal protein S13/S18 CLSA_c02290 PF00411 Ribosomal protein S11 CLSA_c02300 PF01479 S4 domain CLSA_c02300 PF00163 Ribosomal protein S4/S9 N-terminal domain CLSA_c02310 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLSA_c02310 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLSA_c02310 PF01000 RNA polymerase Rpb3/RpoA insert domain CLSA_c02320 PF01196 Ribosomal protein L17 CLSA_c02330 PF00005 ABC transporter CLSA_c02340 PF00005 ABC transporter CLSA_c02350 PF02361 Cobalt transport protein CLSA_c02360 PF01416 tRNA pseudouridine synthase CLSA_c02370 PF00572 Ribosomal protein L13 CLSA_c02380 PF00380 Ribosomal protein S9/S16 CLSA_c02390 PF01520 N-acetylmuramoyl-L-alanine amidase CLSA_c02390 PF11741 AMIN domain CLSA_c02400 PF05681 Fumarate hydratase (Fumerase) CLSA_c02420 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLSA_c02420 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLSA_c02440 PF00486 Transcriptional regulatory protein, C terminal CLSA_c02440 PF00072 Response regulator receiver domain CLSA_c02450 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c02450 PF00672 HAMP domain CLSA_c02450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c02450 PF13426 PAS domain CLSA_c02460 PF00317 Ribonucleotide reductase, all-alpha domain CLSA_c02460 PF02867 Ribonucleotide reductase, barrel domain CLSA_c02460 PF03477 ATP cone domain CLSA_c02470 PF00268 Ribonucleotide reductase, small chain CLSA_c02480 PF05524 PEP-utilising enzyme, N-terminal CLSA_c02480 PF00391 PEP-utilising enzyme, mobile domain CLSA_c02480 PF02896 PEP-utilising enzyme, TIM barrel domain CLSA_c02500 PF01979 Amidohydrolase family CLSA_c02510 PF07486 Cell Wall Hydrolase CLSA_c02530 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLSA_c02570 PF01515 Phosphate acetyl/butaryl transferase CLSA_c02580 PF00871 Acetokinase family CLSA_c02590 PF01966 HD domain CLSA_c02600 PF00809 Pterin binding enzyme CLSA_c02610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLSA_c02610 PF02152 Dihydroneopterin aldolase CLSA_c02630 PF01371 Trp repressor protein CLSA_c02640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLSA_c02640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLSA_c02640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLSA_c02640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLSA_c02650 PF00011 Hsp20/alpha crystallin family CLSA_c02670 PF10369 Small subunit of acetolactate synthase CLSA_c02680 PF08502 LeuA allosteric (dimerisation) domain CLSA_c02680 PF00682 HMGL-like CLSA_c02690 PF00330 Aconitase family (aconitate hydratase) CLSA_c02700 PF00694 Aconitase C-terminal domain CLSA_c02710 PF00180 Isocitrate/isopropylmalate dehydrogenase CLSA_c02720 PF00920 Dehydratase family CLSA_c02730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLSA_c02730 PF00205 Thiamine pyrophosphate enzyme, central domain CLSA_c02730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLSA_c02740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLSA_c02740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLSA_c02750 PF01541 GIY-YIG catalytic domain CLSA_c02760 PF09587 Bacterial capsule synthesis protein PGA_cap CLSA_c02790 PF00005 ABC transporter CLSA_c02790 PF03412 Peptidase C39 family CLSA_c02790 PF00664 ABC transporter transmembrane region CLSA_c02810 PF00005 ABC transporter CLSA_c02820 PF12704 MacB-like periplasmic core domain CLSA_c02820 PF02687 FtsX-like permease family CLSA_c02830 PF01053 Cys/Met metabolism PLP-dependent enzyme CLSA_c02840 PF01053 Cys/Met metabolism PLP-dependent enzyme CLSA_c02850 PF01047 MarR family CLSA_c02870 PF01380 SIS domain CLSA_c02880 PF13276 HTH-like domain CLSA_c02880 PF13333 Integrase core domain CLSA_c02880 PF00665 Integrase core domain CLSA_c02910 PF13276 HTH-like domain CLSA_c02910 PF00665 Integrase core domain CLSA_c02910 PF13333 Integrase core domain CLSA_c03020 PF00202 Aminotransferase class-III CLSA_c03040 PF13732 Domain of unknown function (DUF4162) CLSA_c03040 PF00005 ABC transporter CLSA_c03070 PF04055 Radical SAM superfamily CLSA_c03070 PF02310 B12 binding domain CLSA_c03100 PF00550 Phosphopantetheine attachment site CLSA_c03100 PF00501 AMP-binding enzyme CLSA_c03100 PF00668 Condensation domain CLSA_c03100 PF13193 AMP-binding enzyme C-terminal domain CLSA_c03150 PF12729 Four helix bundle sensory module for signal transduction CLSA_c03150 PF00672 HAMP domain CLSA_c03150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c03160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c03160 PF00672 HAMP domain CLSA_c03160 PF02743 Cache domain CLSA_c03170 PF02743 Cache domain CLSA_c03170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c03170 PF00672 HAMP domain CLSA_c03190 PF01226 Formate/nitrite transporter CLSA_c03210 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLSA_c03230 PF01053 Cys/Met metabolism PLP-dependent enzyme CLSA_c03240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLSA_c03240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLSA_c03240 PF03129 Anticodon binding domain CLSA_c03240 PF02824 TGS domain CLSA_c03250 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLSA_c03290 PF02542 YgbB family CLSA_c03310 PF01522 Polysaccharide deacetylase CLSA_c03330 PF06968 Biotin and Thiamin Synthesis associated domain CLSA_c03330 PF04055 Radical SAM superfamily CLSA_c03350 PF00465 Iron-containing alcohol dehydrogenase CLSA_c03350 PF00171 Aldehyde dehydrogenase family CLSA_c03400 PF02687 FtsX-like permease family CLSA_c03400 PF00005 ABC transporter CLSA_c03400 PF12704 MacB-like periplasmic core domain CLSA_c03450 PF00690 Cation transporter/ATPase, N-terminus CLSA_c03450 PF00689 Cation transporting ATPase, C-terminus CLSA_c03470 PF07729 FCD domain CLSA_c03470 PF00392 Bacterial regulatory proteins, gntR family CLSA_c03480 PF01012 Electron transfer flavoprotein domain CLSA_c03490 PF13237 4Fe-4S dicluster domain CLSA_c03490 PF00766 Electron transfer flavoprotein FAD-binding domain CLSA_c03490 PF01012 Electron transfer flavoprotein domain CLSA_c03500 PF01565 FAD binding domain CLSA_c03500 PF02913 FAD linked oxidases, C-terminal domain CLSA_c03510 PF07516 SecA Wing and Scaffold domain CLSA_c03510 PF07517 SecA DEAD-like domain CLSA_c03510 PF02810 SEC-C motif CLSA_c03510 PF01043 SecA preprotein cross-linking domain CLSA_c03520 PF00483 Nucleotidyl transferase CLSA_c03520 PF01050 Mannose-6-phosphate isomerase CLSA_c03540 PF02659 Putative manganese efflux pump CLSA_c03550 PF06971 Putative DNA-binding protein N-terminus CLSA_c03550 PF02629 CoA binding domain CLSA_c03560 PF00378 Enoyl-CoA hydratase/isomerase CLSA_c03570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLSA_c03570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLSA_c03570 PF02770 Acyl-CoA dehydrogenase, middle domain CLSA_c03580 PF01012 Electron transfer flavoprotein domain CLSA_c03590 PF00766 Electron transfer flavoprotein FAD-binding domain CLSA_c03590 PF01012 Electron transfer flavoprotein domain CLSA_c03600 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLSA_c03600 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLSA_c03610 PF00465 Iron-containing alcohol dehydrogenase CLSA_c03650 PF00166 Chaperonin 10 Kd subunit CLSA_c03660 PF00118 TCP-1/cpn60 chaperonin family CLSA_c03670 PF07963 Prokaryotic N-terminal methylation motif CLSA_c03670 PF00114 Pilin (bacterial filament) CLSA_c03680 PF00478 IMP dehydrogenase / GMP reductase domain CLSA_c03680 PF00571 CBS domain CLSA_c03690 PF00117 Glutamine amidotransferase class-I CLSA_c03690 PF00958 GMP synthase C terminal domain CLSA_c03710 PF00342 Phosphoglucose isomerase CLSA_c03720 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLSA_c03730 PF00072 Response regulator receiver domain CLSA_c03730 PF00486 Transcriptional regulatory protein, C terminal CLSA_c03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c03740 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c03740 PF00672 HAMP domain CLSA_c03770 PF07690 Major Facilitator Superfamily CLSA_c03790 PF01464 Transglycosylase SLT domain CLSA_c03800 PF01479 S4 domain CLSA_c03800 PF00849 RNA pseudouridylate synthase CLSA_c03810 PF00580 UvrD/REP helicase N-terminal domain CLSA_c03810 PF13361 UvrD-like helicase C-terminal domain CLSA_c03820 PF12826 Helix-hairpin-helix motif CLSA_c03820 PF03120 NAD-dependent DNA ligase OB-fold domain CLSA_c03820 PF01653 NAD-dependent DNA ligase adenylation domain CLSA_c03820 PF00533 BRCA1 C Terminus (BRCT) domain CLSA_c03840 PF02686 Glu-tRNAGln amidotransferase C subunit CLSA_c03850 PF01425 Amidase CLSA_c03860 PF02637 GatB domain CLSA_c03860 PF02934 GatB/GatE catalytic domain CLSA_c03900 PF01725 Ham1 family CLSA_c03910 PF12850 Calcineurin-like phosphoesterase superfamily domain CLSA_c04110 PF14659 Phage integrase, N-terminal SAM-like domain CLSA_c04110 PF00589 Phage integrase family CLSA_c04170 PF01695 IstB-like ATP binding protein CLSA_c04180 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLSA_c04180 PF15714 Stage V sporulation protein T C-terminal, transcription factor CLSA_c04190 PF10548 P22AR C-terminal domain CLSA_c04190 PF02498 BRO family, N-terminal domain CLSA_c04220 PF13407 Periplasmic binding protein domain CLSA_c04250 PF09335 SNARE associated Golgi protein CLSA_c04270 PF03741 Integral membrane protein TerC family CLSA_c04280 PF01435 Peptidase family M48 CLSA_c04420 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CLSA_c04420 PF08463 EcoEI R protein C-terminal CLSA_c04420 PF04851 Type III restriction enzyme, res subunit CLSA_c04420 PF00271 Helicase conserved C-terminal domain CLSA_c04430 PF02384 N-6 DNA Methylase CLSA_c04440 PF01420 Type I restriction modification DNA specificity domain CLSA_c04450 PF00589 Phage integrase family CLSA_c04450 PF02899 Phage integrase, N-terminal SAM-like domain CLSA_c04480 PF07015 VirC1 protein CLSA_c04500 PF00872 Transposase, Mutator family CLSA_c04540 PF13411 MerR HTH family regulatory protein CLSA_c04540 PF06445 GyrI-like small molecule binding domain CLSA_c04550 PF01554 MatE CLSA_c04600 PF01431 Peptidase family M13 CLSA_c04600 PF05649 Peptidase family M13 CLSA_c04660 PF01523 Putative modulator of DNA gyrase CLSA_c04670 PF01523 Putative modulator of DNA gyrase CLSA_c04680 PF00884 Sulfatase CLSA_c04700 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c04730 PF00814 Glycoprotease family CLSA_c04750 PF13180 PDZ domain CLSA_c04780 PF13439 Glycosyltransferase Family 4 CLSA_c04780 PF00534 Glycosyl transferases group 1 CLSA_c04820 PF13439 Glycosyltransferase Family 4 CLSA_c04820 PF00534 Glycosyl transferases group 1 CLSA_c04840 PF05582 YabG peptidase U57 CLSA_c04850 PF02743 Cache domain CLSA_c04850 PF00672 HAMP domain CLSA_c04850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c04860 PF06257 Biofilm formation stimulator VEG CLSA_c04870 PF01476 LysM domain CLSA_c04870 PF00877 NlpC/P60 family CLSA_c04880 PF03575 Peptidase family S51 CLSA_c04890 PF02875 Mur ligase family, glutamate ligase domain CLSA_c04890 PF08443 RimK-like ATP-grasp domain CLSA_c04890 PF08245 Mur ligase middle domain CLSA_c04900 PF08544 GHMP kinases C terminal CLSA_c04900 PF00288 GHMP kinases N terminal domain CLSA_c04910 PF09551 Stage II sporulation protein R (spore_II_R) CLSA_c04950 PF06418 CTP synthase N-terminus CLSA_c04950 PF00117 Glutamine amidotransferase class-I CLSA_c04960 PF07498 Rho termination factor, N-terminal domain CLSA_c04960 PF07497 Rho termination factor, RNA-binding domain CLSA_c04960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLSA_c04970 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CLSA_c04970 PF00534 Glycosyl transferases group 1 CLSA_c04980 PF01197 Ribosomal protein L31 CLSA_c04990 PF00265 Thymidine kinase CLSA_c05000 PF17827 PrmC N-terminal domain CLSA_c05000 PF05175 Methyltransferase small domain CLSA_c05010 PF03462 PCRF domain CLSA_c05010 PF00472 RF-1 domain CLSA_c05030 PF01300 Telomere recombination CLSA_c05030 PF03481 Putative GTP-binding controlling metal-binding CLSA_c05040 PF02502 Ribose/Galactose Isomerase CLSA_c05070 PF02350 UDP-N-acetylglucosamine 2-epimerase CLSA_c05080 PF00108 Thiolase, N-terminal domain CLSA_c05080 PF02803 Thiolase, C-terminal domain CLSA_c05090 PF00119 ATP synthase A chain CLSA_c05100 PF00137 ATP synthase subunit C CLSA_c05110 PF00430 ATP synthase B/B' CF(0) CLSA_c05120 PF00213 ATP synthase delta (OSCP) subunit CLSA_c05130 PF00306 ATP synthase alpha/beta chain, C terminal domain CLSA_c05130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLSA_c05130 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLSA_c05140 PF00231 ATP synthase CLSA_c05150 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLSA_c05150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLSA_c05160 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLSA_c05160 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLSA_c05180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLSA_c05190 PF08486 Stage II sporulation protein CLSA_c05210 PF12116 Stage III sporulation protein D CLSA_c05230 PF06866 Protein of unknown function (DUF1256) CLSA_c05320 PF02772 S-adenosylmethionine synthetase, central domain CLSA_c05320 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLSA_c05320 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLSA_c05330 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CLSA_c05330 PF13538 UvrD-like helicase C-terminal domain CLSA_c05330 PF14490 Helix-hairpin-helix containing domain CLSA_c05350 PF00156 Phosphoribosyl transferase domain CLSA_c05360 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLSA_c05360 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CLSA_c05370 PF07516 SecA Wing and Scaffold domain CLSA_c05370 PF07517 SecA DEAD-like domain CLSA_c05370 PF02810 SEC-C motif CLSA_c05370 PF01043 SecA preprotein cross-linking domain CLSA_c05380 PF00472 RF-1 domain CLSA_c05380 PF03462 PCRF domain CLSA_c05420 PF00486 Transcriptional regulatory protein, C terminal CLSA_c05420 PF00072 Response regulator receiver domain CLSA_c05430 PF00672 HAMP domain CLSA_c05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c05430 PF00989 PAS fold CLSA_c05430 PF18698 Histidine kinase sensor domain CLSA_c05430 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c05450 PF17674 HHH domain CLSA_c05450 PF00575 S1 RNA binding domain CLSA_c05450 PF09371 Tex-like protein N-terminal domain CLSA_c05450 PF16921 Tex protein YqgF-like domain CLSA_c05470 PF01546 Peptidase family M20/M25/M40 CLSA_c05490 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLSA_c05490 PF03807 NADP oxidoreductase coenzyme F420-dependent CLSA_c05510 PF00892 EamA-like transporter family CLSA_c05530 PF00293 NUDIX domain CLSA_c05540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLSA_c05540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLSA_c05570 PF13375 RnfC Barrel sandwich hybrid domain CLSA_c05570 PF10531 SLBB domain CLSA_c05570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLSA_c05570 PF13237 4Fe-4S dicluster domain CLSA_c05580 PF03116 NQR2, RnfD, RnfE family CLSA_c05590 PF04205 FMN-binding domain CLSA_c05600 PF02508 Rnf-Nqr subunit, membrane protein CLSA_c05610 PF02508 Rnf-Nqr subunit, membrane protein CLSA_c05620 PF13187 4Fe-4S dicluster domain CLSA_c05620 PF04060 Putative Fe-S cluster CLSA_c05630 PF02424 ApbE family CLSA_c05680 PF00440 Bacterial regulatory proteins, tetR family CLSA_c05680 PF08361 MAATS-type transcriptional repressor, C-terminal region CLSA_c05690 PF01814 Hemerythrin HHE cation binding domain CLSA_c05700 PF12822 ECF transporter, substrate-specific component CLSA_c05710 PF00583 Acetyltransferase (GNAT) family CLSA_c05720 PF00814 Glycoprotease family CLSA_c05730 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLSA_c05780 PF04647 Accessory gene regulator B CLSA_c05800 PF00005 ABC transporter CLSA_c05870 PF02915 Rubrerythrin CLSA_c05880 PF00753 Metallo-beta-lactamase superfamily CLSA_c05880 PF00258 Flavodoxin CLSA_c05890 PF01042 Endoribonuclease L-PSP CLSA_c05900 PF03060 Nitronate monooxygenase CLSA_c05930 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c05960 PF01297 Zinc-uptake complex component A periplasmic CLSA_c05970 PF05188 MutS domain II CLSA_c05970 PF05192 MutS domain III CLSA_c05970 PF05190 MutS family domain IV CLSA_c05970 PF00488 MutS domain V CLSA_c05970 PF01624 MutS domain I CLSA_c06050 PF02401 LytB protein CLSA_c06050 PF00575 S1 RNA binding domain CLSA_c06060 PF02887 Pyruvate kinase, alpha/beta domain CLSA_c06060 PF00224 Pyruvate kinase, barrel domain CLSA_c06070 PF07687 Peptidase dimerisation domain CLSA_c06070 PF01546 Peptidase family M20/M25/M40 CLSA_c06080 PF00877 NlpC/P60 family CLSA_c06100 PF02545 Maf-like protein CLSA_c06110 PF04002 RadC-like JAB domain CLSA_c06130 PF04085 rod shape-determining protein MreC CLSA_c06150 PF00905 Penicillin binding protein transpeptidase domain CLSA_c06160 PF17746 SfsA N-terminal OB domain CLSA_c06160 PF03749 Sugar fermentation stimulation protein RE domain CLSA_c06170 PF03775 Septum formation inhibitor MinC, C-terminal domain CLSA_c06180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLSA_c06190 PF03776 Septum formation topological specificity factor MinE CLSA_c06200 PF01098 Cell cycle protein CLSA_c06240 PF00486 Transcriptional regulatory protein, C terminal CLSA_c06240 PF00072 Response regulator receiver domain CLSA_c06250 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c06250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c06260 PF00005 ABC transporter CLSA_c06300 PF00486 Transcriptional regulatory protein, C terminal CLSA_c06300 PF00072 Response regulator receiver domain CLSA_c06310 PF00005 ABC transporter CLSA_c06350 PF16736 Single Cache-like CLSA_c06350 PF00989 PAS fold CLSA_c06350 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c06360 PF04286 Protein of unknown function (DUF445) CLSA_c06390 PF10150 Ribonuclease E/G family CLSA_c06390 PF00575 S1 RNA binding domain CLSA_c06400 PF00829 Ribosomal prokaryotic L21 protein CLSA_c06420 PF01016 Ribosomal L27 protein CLSA_c06430 PF01926 50S ribosome-binding GTPase CLSA_c06430 PF01018 GTP1/OBG CLSA_c06430 PF09269 Domain of unknown function (DUF1967) CLSA_c06440 PF01985 CRS1 / YhbY (CRM) domain CLSA_c06450 PF01467 Cytidylyltransferase-like CLSA_c06460 PF01966 HD domain CLSA_c06470 PF03816 Cell envelope-related transcriptional attenuator domain CLSA_c06480 PF00849 RNA pseudouridylate synthase CLSA_c06490 PF07943 Penicillin-binding protein 5, C-terminal domain CLSA_c06490 PF00768 D-alanyl-D-alanine carboxypeptidase CLSA_c06500 PF10531 SLBB domain CLSA_c06530 PF05958 tRNA (Uracil-5-)-methyltransferase CLSA_c06570 PF02342 TerD domain CLSA_c06580 PF02342 TerD domain CLSA_c06590 PF02342 TerD domain CLSA_c06600 PF02342 TerD domain CLSA_c06610 PF03741 Integral membrane protein TerC family CLSA_c06650 PF00012 Hsp70 protein CLSA_c06660 PF00012 Hsp70 protein CLSA_c06680 PF00012 Hsp70 protein CLSA_c06700 PF00005 ABC transporter CLSA_c06700 PF13732 Domain of unknown function (DUF4162) CLSA_c06720 PF00331 Glycosyl hydrolase family 10 CLSA_c06730 PF04616 Glycosyl hydrolases family 43 CLSA_c06730 PF03422 Carbohydrate binding module (family 6) CLSA_c06740 PF00149 Calcineurin-like phosphoesterase CLSA_c06740 PF02872 5'-nucleotidase, C-terminal domain CLSA_c06750 PF02554 Carbon starvation protein CstA CLSA_c06750 PF13722 5TM C-terminal transporter carbon starvation CstA CLSA_c06760 PF13396 Phospholipase_D-nuclease N-terminal CLSA_c06760 PF13091 PLD-like domain CLSA_c06800 PF18152 DAHP synthase ferredoxin-like domain CLSA_c06800 PF00793 DAHP synthetase I family CLSA_c06810 PF01761 3-dehydroquinate synthase CLSA_c06820 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLSA_c06830 PF01264 Chorismate synthase CLSA_c06840 PF00800 Prephenate dehydratase CLSA_c06840 PF01817 Chorismate mutase type II CLSA_c06850 PF08501 Shikimate dehydrogenase substrate binding domain CLSA_c06860 PF01202 Shikimate kinase CLSA_c06880 PF18152 DAHP synthase ferredoxin-like domain CLSA_c06880 PF00793 DAHP synthetase I family CLSA_c06890 PF02153 Prephenate dehydrogenase CLSA_c06900 PF04616 Glycosyl hydrolases family 43 CLSA_c06900 PF03422 Carbohydrate binding module (family 6) CLSA_c06910 PF01522 Polysaccharide deacetylase CLSA_c06970 PF00488 MutS domain V CLSA_c06970 PF05190 MutS family domain IV CLSA_c06970 PF05192 MutS domain III CLSA_c06970 PF05188 MutS domain II CLSA_c06970 PF01624 MutS domain I CLSA_c06980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c06980 PF03466 LysR substrate binding domain CLSA_c06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c06990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLSA_c07000 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLSA_c07000 PF08501 Shikimate dehydrogenase substrate binding domain CLSA_c07010 PF08501 Shikimate dehydrogenase substrate binding domain CLSA_c07010 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLSA_c07020 PF07690 Major Facilitator Superfamily CLSA_c07030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLSA_c07030 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c07040 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLSA_c07040 PF08501 Shikimate dehydrogenase substrate binding domain CLSA_c07050 PF07690 Major Facilitator Superfamily CLSA_c07060 PF06874 Firmicute fructose-1,6-bisphosphatase CLSA_c07090 PF00266 Aminotransferase class-V CLSA_c07120 PF10502 Signal peptidase, peptidase S26 CLSA_c07140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLSA_c07140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLSA_c07150 PF00202 Aminotransferase class-III CLSA_c07160 PF00696 Amino acid kinase family CLSA_c07170 PF01960 ArgJ family CLSA_c07180 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLSA_c07180 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLSA_c07190 PF00206 Lyase CLSA_c07190 PF14698 Argininosuccinate lyase C-terminal CLSA_c07200 PF00764 Arginosuccinate synthase CLSA_c07220 PF04239 Protein of unknown function (DUF421) CLSA_c07230 PF03129 Anticodon binding domain CLSA_c07230 PF02824 TGS domain CLSA_c07230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLSA_c07230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLSA_c07240 PF02743 Cache domain CLSA_c07240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c07240 PF00672 HAMP domain CLSA_c07250 PF01842 ACT domain CLSA_c07250 PF03315 Serine dehydratase beta chain CLSA_c07260 PF03313 Serine dehydratase alpha chain CLSA_c07270 PF00486 Transcriptional regulatory protein, C terminal CLSA_c07270 PF00072 Response regulator receiver domain CLSA_c07280 PF16736 Single Cache-like CLSA_c07280 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c07280 PF00989 PAS fold CLSA_c07290 PF02424 ApbE family CLSA_c07300 PF12801 4Fe-4S binding domain CLSA_c07350 PF08543 Phosphomethylpyrimidine kinase CLSA_c07360 PF01964 Radical SAM ThiC family CLSA_c07370 PF02110 Hydroxyethylthiazole kinase family CLSA_c07380 PF02581 Thiamine monophosphate synthase CLSA_c07390 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c07400 PF16124 RecQ zinc-binding CLSA_c07400 PF00271 Helicase conserved C-terminal domain CLSA_c07400 PF00570 HRDC domain CLSA_c07400 PF09382 RQC domain CLSA_c07400 PF00270 DEAD/DEAH box helicase CLSA_c07410 PF02811 PHP domain CLSA_c07420 PF00005 ABC transporter CLSA_c07430 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c07440 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLSA_c07450 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLSA_c07460 PF01263 Aldose 1-epimerase CLSA_c07470 PF00072 Response regulator receiver domain CLSA_c07470 PF12833 Helix-turn-helix domain CLSA_c07490 PF13407 Periplasmic binding protein domain CLSA_c07500 PF00005 ABC transporter CLSA_c07510 PF02653 Branched-chain amino acid transport system / permease component CLSA_c07520 PF02653 Branched-chain amino acid transport system / permease component CLSA_c07530 PF06580 Histidine kinase CLSA_c07530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c07530 PF00672 HAMP domain CLSA_c07530 PF02743 Cache domain CLSA_c07540 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLSA_c07560 PF02610 L-arabinose isomerase CLSA_c07560 PF11762 L-arabinose isomerase C-terminal domain CLSA_c07570 PF00392 Bacterial regulatory proteins, gntR family CLSA_c07580 PF00596 Class II Aldolase and Adducin N-terminal domain CLSA_c07590 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLSA_c07600 PF02779 Transketolase, pyrimidine binding domain CLSA_c07600 PF00456 Transketolase, thiamine diphosphate binding domain CLSA_c07600 PF02780 Transketolase, C-terminal domain CLSA_c07620 PF00083 Sugar (and other) transporter CLSA_c07650 PF13407 Periplasmic binding protein domain CLSA_c07660 PF00484 Carbonic anhydrase CLSA_c07690 PF05227 CHASE3 domain CLSA_c07690 PF00672 HAMP domain CLSA_c07690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c07740 PF02675 S-adenosylmethionine decarboxylase CLSA_c07750 PF01276 Orn/Lys/Arg decarboxylase, major domain CLSA_c07750 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLSA_c07760 PF17284 Spermidine synthase tetramerisation domain CLSA_c07770 PF16653 Saccharopine dehydrogenase C-terminal domain CLSA_c07770 PF03435 Saccharopine dehydrogenase NADP binding domain CLSA_c07790 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLSA_c08040 PF01556 DnaJ C terminal domain CLSA_c08040 PF00684 DnaJ central domain CLSA_c08040 PF00226 DnaJ domain CLSA_c08430 PF00668 Condensation domain CLSA_c08430 PF13193 AMP-binding enzyme C-terminal domain CLSA_c08430 PF00550 Phosphopantetheine attachment site CLSA_c08430 PF00501 AMP-binding enzyme CLSA_c08430 PF00975 Thioesterase domain CLSA_c08490 PF00491 Arginase family CLSA_c08500 PF00356 Bacterial regulatory proteins, lacI family CLSA_c08510 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CLSA_c08510 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CLSA_c08520 PF16363 GDP-mannose 4,6 dehydratase CLSA_c08530 PF00288 GHMP kinases N terminal domain CLSA_c08530 PF08544 GHMP kinases C terminal CLSA_c08530 PF10509 Galactokinase galactose-binding signature CLSA_c08540 PF07722 Peptidase C26 CLSA_c08550 PF12724 Flavodoxin domain CLSA_c08570 PF00291 Pyridoxal-phosphate dependent enzyme CLSA_c08580 PF00465 Iron-containing alcohol dehydrogenase CLSA_c08590 PF00005 ABC transporter CLSA_c08600 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLSA_c08610 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c08620 PF13556 PucR C-terminal helix-turn-helix domain CLSA_c08620 PF17853 GGDEF-like domain CLSA_c08630 PF00202 Aminotransferase class-III CLSA_c08660 PF12833 Helix-turn-helix domain CLSA_c08660 PF02311 AraC-like ligand binding domain CLSA_c08670 PF16874 Glycosyl hydrolase family 36 C-terminal domain CLSA_c08670 PF16875 Glycosyl hydrolase family 36 N-terminal domain CLSA_c08680 PF00392 Bacterial regulatory proteins, gntR family CLSA_c08690 PF00005 ABC transporter CLSA_c08720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLSA_c08740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLSA_c08740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLSA_c08770 PF04647 Accessory gene regulator B CLSA_c08790 PF01584 CheW-like domain CLSA_c08790 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c08790 PF01627 Hpt domain CLSA_c08790 PF07194 P2 response regulator binding domain CLSA_c08800 PF00175 Oxidoreductase NAD-binding domain CLSA_c08800 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLSA_c08810 PF13247 4Fe-4S dicluster domain CLSA_c08810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLSA_c08810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c08840 PF13333 Integrase core domain CLSA_c08840 PF00665 Integrase core domain CLSA_c08840 PF13276 HTH-like domain CLSA_c08940 PF02424 ApbE family CLSA_c08950 PF03466 LysR substrate binding domain CLSA_c08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c08960 PF04205 FMN-binding domain CLSA_c08960 PF00890 FAD binding domain CLSA_c08960 PF03358 NADPH-dependent FMN reductase CLSA_c08970 PF04205 FMN-binding domain CLSA_c08970 PF03358 NADPH-dependent FMN reductase CLSA_c08970 PF00890 FAD binding domain CLSA_c09010 PF00872 Transposase, Mutator family CLSA_c09060 PF12161 HsdM N-terminal domain CLSA_c09060 PF02384 N-6 DNA Methylase CLSA_c09070 PF12008 Type I restriction and modification enzyme - subunit R C terminal CLSA_c09070 PF18766 SWI2/SNF2 ATPase CLSA_c09070 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLSA_c09180 PF02498 BRO family, N-terminal domain CLSA_c09180 PF10548 P22AR C-terminal domain CLSA_c09240 PF10703 MoaF N-terminal domain CLSA_c09240 PF17409 MoaF C-terminal domain CLSA_c09250 PF13411 MerR HTH family regulatory protein CLSA_c09250 PF06445 GyrI-like small molecule binding domain CLSA_c09290 PF12323 Helix-turn-helix domain CLSA_c09290 PF01385 Probable transposase CLSA_c09290 PF07282 Putative transposase DNA-binding domain CLSA_c09330 PF00069 Protein kinase domain CLSA_c09330 PF03793 PASTA domain CLSA_c09340 PF00436 Single-strand binding protein family CLSA_c09360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLSA_c09370 PF00999 Sodium/hydrogen exchanger family CLSA_c09410 PF17189 Glycosyl hydrolase family 30 beta sandwich domain CLSA_c09430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c09430 PF00672 HAMP domain CLSA_c09430 PF02743 Cache domain CLSA_c09450 PF00145 C-5 cytosine-specific DNA methylase CLSA_c09460 PF13276 HTH-like domain CLSA_c09460 PF13333 Integrase core domain CLSA_c09460 PF00665 Integrase core domain CLSA_c09530 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CLSA_c09540 PF00005 ABC transporter CLSA_c09560 PF00005 ABC transporter CLSA_c09590 PF00486 Transcriptional regulatory protein, C terminal CLSA_c09590 PF00072 Response regulator receiver domain CLSA_c09600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c09610 PF01979 Amidohydrolase family CLSA_c09630 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLSA_c09640 PF03610 PTS system fructose IIA component CLSA_c09640 PF03830 PTS system sorbose subfamily IIB component CLSA_c09650 PF03609 PTS system sorbose-specific iic component CLSA_c09660 PF03613 PTS system mannose/fructose/sorbose family IID component CLSA_c09720 PF01721 Class II bacteriocin CLSA_c09770 PF00664 ABC transporter transmembrane region CLSA_c09770 PF03412 Peptidase C39 family CLSA_c09770 PF00005 ABC transporter CLSA_c09810 PF00872 Transposase, Mutator family CLSA_c09820 PF00232 Glycosyl hydrolase family 1 CLSA_c09830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLSA_c09840 PF05043 Mga helix-turn-helix domain CLSA_c09840 PF00874 PRD domain CLSA_c09840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLSA_c09840 PF08279 HTH domain CLSA_c09850 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLSA_c09870 PF02378 Phosphotransferase system, EIIC CLSA_c09880 PF00388 Phosphatidylinositol-specific phospholipase C, X domain CLSA_c09890 PF03812 2-keto-3-deoxygluconate permease CLSA_c09900 PF00150 Cellulase (glycosyl hydrolase family 5) CLSA_c09910 PF00480 ROK family CLSA_c09920 PF00232 Glycosyl hydrolase family 1 CLSA_c09930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLSA_c09940 PF02378 Phosphotransferase system, EIIC CLSA_c09950 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLSA_c09960 PF00356 Bacterial regulatory proteins, lacI family CLSA_c09970 PF00550 Phosphopantetheine attachment site CLSA_c09970 PF13193 AMP-binding enzyme C-terminal domain CLSA_c09970 PF18563 TubC N-terminal docking domain CLSA_c09970 PF00501 AMP-binding enzyme CLSA_c09970 PF00668 Condensation domain CLSA_c09980 PF13193 AMP-binding enzyme C-terminal domain CLSA_c09980 PF00668 Condensation domain CLSA_c09980 PF00550 Phosphopantetheine attachment site CLSA_c09980 PF00501 AMP-binding enzyme CLSA_c09990 PF00672 HAMP domain CLSA_c09990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c10000 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CLSA_c10010 PF00375 Sodium:dicarboxylate symporter family CLSA_c10040 PF06445 GyrI-like small molecule binding domain CLSA_c10040 PF12833 Helix-turn-helix domain CLSA_c10060 PF00156 Phosphoribosyl transferase domain CLSA_c10060 PF01738 Dienelactone hydrolase family CLSA_c10070 PF02378 Phosphotransferase system, EIIC CLSA_c10070 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLSA_c10070 PF00367 phosphotransferase system, EIIB CLSA_c10080 PF03123 CAT RNA binding domain CLSA_c10080 PF00874 PRD domain CLSA_c10090 PF04397 LytTr DNA-binding domain CLSA_c10090 PF00072 Response regulator receiver domain CLSA_c10100 PF00005 ABC transporter CLSA_c10160 PF07690 Major Facilitator Superfamily CLSA_c10170 PF01047 MarR family CLSA_c10180 PF01618 MotA/TolQ/ExbB proton channel family CLSA_c10190 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLSA_c10190 PF00691 OmpA family CLSA_c10200 PF02743 Cache domain CLSA_c10200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c10200 PF00672 HAMP domain CLSA_c10210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLSA_c10210 PF00682 HMGL-like CLSA_c10210 PF00364 Biotin-requiring enzyme CLSA_c10210 PF02436 Conserved carboxylase domain CLSA_c10210 PF00289 Biotin carboxylase, N-terminal domain CLSA_c10210 PF02785 Biotin carboxylase C-terminal domain CLSA_c10220 PF02502 Ribose/Galactose Isomerase CLSA_c10230 PF03030 Inorganic H+ pyrophosphatase CLSA_c10240 PF00266 Aminotransferase class-V CLSA_c10260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CLSA_c10270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLSA_c10270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLSA_c10280 PF01418 Helix-turn-helix domain, rpiR family CLSA_c10280 PF01380 SIS domain CLSA_c10290 PF00248 Aldo/keto reductase family CLSA_c10340 PF07969 Amidohydrolase family CLSA_c10350 PF01053 Cys/Met metabolism PLP-dependent enzyme CLSA_c10360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c10370 PF00085 Thioredoxin CLSA_c10380 PF01047 MarR family CLSA_c10400 PF00455 DeoR C terminal sensor domain CLSA_c10400 PF08220 DeoR-like helix-turn-helix domain CLSA_c10410 PF01791 DeoC/LacD family aldolase CLSA_c10420 PF03063 Prismane/CO dehydrogenase family CLSA_c10430 PF00571 CBS domain CLSA_c10430 PF03471 Transporter associated domain CLSA_c10430 PF01595 Cyclin M transmembrane N-terminal domain CLSA_c10440 PF13520 Amino acid permease CLSA_c10460 PF00005 ABC transporter CLSA_c10470 PF00392 Bacterial regulatory proteins, gntR family CLSA_c10500 PF00890 FAD binding domain CLSA_c10510 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLSA_c10510 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLSA_c10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c10520 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c10520 PF00672 HAMP domain CLSA_c10530 PF00072 Response regulator receiver domain CLSA_c10530 PF00486 Transcriptional regulatory protein, C terminal CLSA_c10560 PF00005 ABC transporter CLSA_c10570 PF02687 FtsX-like permease family CLSA_c10570 PF12704 MacB-like periplasmic core domain CLSA_c10600 PF13276 HTH-like domain CLSA_c10600 PF00665 Integrase core domain CLSA_c10600 PF13333 Integrase core domain CLSA_c10610 PF12464 Maltose acetyltransferase CLSA_c10610 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c10620 PF02743 Cache domain CLSA_c10620 PF00672 HAMP domain CLSA_c10620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c10650 PF13654 AAA domain CLSA_c10650 PF05362 Lon protease (S16) C-terminal proteolytic domain CLSA_c10660 PF01740 STAS domain CLSA_c10670 PF13581 Histidine kinase-like ATPase domain CLSA_c10680 PF04545 Sigma-70, region 4 CLSA_c10680 PF04542 Sigma-70 region 2 CLSA_c10680 PF04539 Sigma-70 region 3 CLSA_c10690 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLSA_c10700 PF07451 Stage V sporulation protein AD (SpoVAD) CLSA_c10710 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLSA_c10720 PF00690 Cation transporter/ATPase, N-terminus CLSA_c10720 PF00689 Cation transporting ATPase, C-terminus CLSA_c10740 PF06144 DNA polymerase III, delta subunit CLSA_c10750 PF01649 Ribosomal protein S20 CLSA_c10760 PF03418 Germination protease CLSA_c10780 PF00665 Integrase core domain CLSA_c10780 PF13333 Integrase core domain CLSA_c10780 PF13276 HTH-like domain CLSA_c10800 PF06421 GTP-binding protein LepA C-terminus CLSA_c10800 PF03144 Elongation factor Tu domain 2 CLSA_c10800 PF00009 Elongation factor Tu GTP binding domain CLSA_c10800 PF00679 Elongation factor G C-terminus CLSA_c10820 PF06969 HemN C-terminal domain CLSA_c10820 PF04055 Radical SAM superfamily CLSA_c10830 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CLSA_c10830 PF01628 HrcA protein C terminal domain CLSA_c10840 PF01025 GrpE CLSA_c10850 PF00012 Hsp70 protein CLSA_c10860 PF00684 DnaJ central domain CLSA_c10860 PF00226 DnaJ domain CLSA_c10860 PF01556 DnaJ C terminal domain CLSA_c10870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLSA_c10870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLSA_c10880 PF02390 Putative methyltransferase CLSA_c10900 PF04452 RNA methyltransferase CLSA_c10910 PF04055 Radical SAM superfamily CLSA_c10910 PF00919 Uncharacterized protein family UPF0004 CLSA_c10910 PF01938 TRAM domain CLSA_c10920 PF01230 HIT domain CLSA_c10930 PF01165 Ribosomal protein S21 CLSA_c10940 PF09424 Yqey-like protein CLSA_c10970 PF07697 7TM-HD extracellular CLSA_c10970 PF01966 HD domain CLSA_c10970 PF07698 7TM receptor with intracellular HD hydrolase CLSA_c10980 PF02130 Uncharacterized protein family UPF0054 CLSA_c10990 PF01219 Prokaryotic diacylglycerol kinase CLSA_c11000 PF07650 KH domain CLSA_c11000 PF01926 50S ribosome-binding GTPase CLSA_c11010 PF11967 Recombination protein O N terminal CLSA_c11010 PF02565 Recombination protein O C terminal CLSA_c11030 PF00571 CBS domain CLSA_c11030 PF08279 HTH domain CLSA_c11040 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLSA_c11040 PF00391 PEP-utilising enzyme, mobile domain CLSA_c11040 PF02896 PEP-utilising enzyme, TIM barrel domain CLSA_c11060 PF13286 Phosphohydrolase-associated domain CLSA_c11060 PF01966 HD domain CLSA_c11070 PF01807 CHC2 zinc finger CLSA_c11070 PF08275 DNA primase catalytic core, N-terminal domain CLSA_c11070 PF10410 DnaB-helicase binding domain of primase CLSA_c11080 PF04545 Sigma-70, region 4 CLSA_c11080 PF04539 Sigma-70 region 3 CLSA_c11080 PF04542 Sigma-70 region 2 CLSA_c11080 PF00140 Sigma-70 factor, region 1.2 CLSA_c11080 PF03979 Sigma-70 factor, region 1.1 CLSA_c11100 PF01784 NIF3 (NGG1p interacting factor 3) CLSA_c11170 PF18698 Histidine kinase sensor domain CLSA_c11170 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c11170 PF00672 HAMP domain CLSA_c11180 PF00486 Transcriptional regulatory protein, C terminal CLSA_c11180 PF00072 Response regulator receiver domain CLSA_c11210 PF03323 Bacillus/Clostridium GerA spore germination protein CLSA_c11220 PF00082 Subtilase family CLSA_c11250 PF02446 4-alpha-glucanotransferase CLSA_c11260 PF00343 Carbohydrate phosphorylase CLSA_c11270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLSA_c11270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLSA_c11300 PF00591 Glycosyl transferase family, a/b domain CLSA_c11300 PF02885 Glycosyl transferase family, helical bundle domain CLSA_c11300 PF00117 Glutamine amidotransferase class-I CLSA_c11320 PF01063 Amino-transferase class IV CLSA_c11330 PF00708 Acylphosphatase CLSA_c11340 PF00334 Nucleoside diphosphate kinase CLSA_c11350 PF01381 Helix-turn-helix CLSA_c11370 PF00912 Transglycosylase CLSA_c11370 PF00905 Penicillin binding protein transpeptidase domain CLSA_c11390 PF00156 Phosphoribosyl transferase domain CLSA_c11400 PF16360 GTP-binding GTPase Middle Region CLSA_c11400 PF01926 50S ribosome-binding GTPase CLSA_c11400 PF13167 GTP-binding GTPase N-terminal CLSA_c11430 PF00392 Bacterial regulatory proteins, gntR family CLSA_c11430 PF00155 Aminotransferase class I and II CLSA_c11440 PF01205 Uncharacterized protein family UPF0029 CLSA_c11440 PF09186 Domain of unknown function (DUF1949) CLSA_c11450 PF01709 Transcriptional regulator CLSA_c11460 PF00437 Type II/IV secretion system protein CLSA_c11470 PF01478 Type IV leader peptidase family CLSA_c11470 PF06750 Bacterial Peptidase A24 N-terminal domain CLSA_c11480 PF00437 Type II/IV secretion system protein CLSA_c11480 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLSA_c11490 PF00482 Type II secretion system (T2SS), protein F CLSA_c11580 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c11590 PF09335 SNARE associated Golgi protein CLSA_c11600 PF00696 Amino acid kinase family CLSA_c11600 PF13840 ACT domain CLSA_c11610 PF03951 Glutamine synthetase, beta-Grasp domain CLSA_c11610 PF00120 Glutamine synthetase, catalytic domain CLSA_c11620 PF03861 ANTAR domain CLSA_c11620 PF00072 Response regulator receiver domain CLSA_c11630 PF01645 Conserved region in glutamate synthase CLSA_c11630 PF04898 Glutamate synthase central domain CLSA_c11630 PF00310 Glutamine amidotransferases class-II CLSA_c11630 PF01493 GXGXG motif CLSA_c11640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLSA_c11640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c11660 PF00180 Isocitrate/isopropylmalate dehydrogenase CLSA_c11680 PF02447 GntP family permease CLSA_c11690 PF02595 Glycerate kinase family CLSA_c11700 PF05651 Putative sugar diacid recognition CLSA_c11700 PF17853 GGDEF-like domain CLSA_c11700 PF13556 PucR C-terminal helix-turn-helix domain CLSA_c11710 PF03063 Prismane/CO dehydrogenase family CLSA_c11740 PF02073 Thermophilic metalloprotease (M29) CLSA_c11750 PF00476 DNA polymerase family A CLSA_c11750 PF01367 5'-3' exonuclease, C-terminal SAM fold CLSA_c11750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLSA_c11760 PF01121 Dephospho-CoA kinase CLSA_c11770 PF01464 Transglycosylase SLT domain CLSA_c11790 PF01695 IstB-like ATP binding protein CLSA_c11850 PF02796 Helix-turn-helix domain of resolvase CLSA_c11850 PF00239 Resolvase, N terminal domain CLSA_c11890 PF00440 Bacterial regulatory proteins, tetR family CLSA_c11890 PF18665 Tetracyclin repressor-like, C-terminal domain CLSA_c11900 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CLSA_c11900 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CLSA_c11910 PF01061 ABC-2 type transporter CLSA_c11920 PF01061 ABC-2 type transporter CLSA_c11930 PF00672 HAMP domain CLSA_c11930 PF00989 PAS fold CLSA_c11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c11930 PF18698 Histidine kinase sensor domain CLSA_c11930 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c11940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c11940 PF00672 HAMP domain CLSA_c11940 PF13426 PAS domain CLSA_c11940 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c11960 PF01751 Toprim domain CLSA_c11960 PF01131 DNA topoisomerase CLSA_c11970 PF13847 Methyltransferase domain CLSA_c11980 PF00672 HAMP domain CLSA_c11980 PF02743 Cache domain CLSA_c11980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c11990 PF00909 Ammonium Transporter Family CLSA_c12010 PF00005 ABC transporter CLSA_c12020 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c12030 PF03788 LrgA family CLSA_c12040 PF04172 LrgB-like family CLSA_c12070 PF00768 D-alanyl-D-alanine carboxypeptidase CLSA_c12070 PF07943 Penicillin-binding protein 5, C-terminal domain CLSA_c12080 PF01522 Polysaccharide deacetylase CLSA_c12080 PF03422 Carbohydrate binding module (family 6) CLSA_c12080 PF00457 Glycosyl hydrolases family 11 CLSA_c12090 PF08220 DeoR-like helix-turn-helix domain CLSA_c12090 PF00455 DeoR C terminal sensor domain CLSA_c12100 PF00465 Iron-containing alcohol dehydrogenase CLSA_c12110 PF01116 Fructose-bisphosphate aldolase class-II CLSA_c12120 PF00294 pfkB family carbohydrate kinase CLSA_c12130 PF04962 KduI/IolB family CLSA_c12140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLSA_c12140 PF00205 Thiamine pyrophosphate enzyme, central domain CLSA_c12140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLSA_c12150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLSA_c12150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLSA_c12160 PF01261 Xylose isomerase-like TIM barrel CLSA_c12170 PF00083 Sugar (and other) transporter CLSA_c12180 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLSA_c12190 PF08353 Domain of unknown function (DUF1727) CLSA_c12190 PF08245 Mur ligase middle domain CLSA_c12210 PF12392 Collagenase CLSA_c12210 PF01136 Peptidase family U32 CLSA_c12220 PF01713 Smr domain CLSA_c12220 PF00488 MutS domain V CLSA_c12230 PF04463 Protein of unknown function (DUF523) CLSA_c12250 PF00149 Calcineurin-like phosphoesterase CLSA_c12250 PF12320 Type 5 capsule protein repressor C-terminal domain CLSA_c12260 PF13175 AAA ATPase domain CLSA_c12270 PF14693 Ribosomal protein TL5, C-terminal domain CLSA_c12270 PF01386 Ribosomal L25p family CLSA_c12280 PF01386 Ribosomal L25p family CLSA_c12280 PF14693 Ribosomal protein TL5, C-terminal domain CLSA_c12290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLSA_c12290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLSA_c12290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLSA_c12290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLSA_c12310 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLSA_c12320 PF03023 Lipid II flippase MurJ CLSA_c12340 PF00534 Glycosyl transferases group 1 CLSA_c12340 PF13439 Glycosyltransferase Family 4 CLSA_c12380 PF01522 Polysaccharide deacetylase CLSA_c12390 PF06071 Protein of unknown function (DUF933) CLSA_c12390 PF01926 50S ribosome-binding GTPase CLSA_c12410 PF01238 Phosphomannose isomerase type I CLSA_c12430 PF00365 Phosphofructokinase CLSA_c12450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLSA_c12450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLSA_c12460 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CLSA_c12460 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CLSA_c12470 PF01979 Amidohydrolase family CLSA_c12480 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLSA_c12490 PF00175 Oxidoreductase NAD-binding domain CLSA_c12490 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLSA_c12510 PF00156 Phosphoribosyl transferase domain CLSA_c12530 PF02901 Pyruvate formate lyase-like CLSA_c12530 PF01228 Glycine radical CLSA_c12540 PF02901 Pyruvate formate lyase-like CLSA_c12540 PF01228 Glycine radical CLSA_c12550 PF04055 Radical SAM superfamily CLSA_c12560 PF00301 Rubredoxin CLSA_c12580 PF00056 lactate/malate dehydrogenase, NAD binding domain CLSA_c12580 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLSA_c12590 PF03099 Biotin/lipoate A/B protein ligase family CLSA_c12590 PF08279 HTH domain CLSA_c12590 PF02237 Biotin protein ligase C terminal domain CLSA_c12600 PF12708 Pectate lyase superfamily protein CLSA_c12600 PF09992 Phosphodiester glycosidase CLSA_c12620 PF02163 Peptidase family M50 CLSA_c12630 PF05746 DALR anticodon binding domain CLSA_c12630 PF03485 Arginyl tRNA synthetase N terminal domain CLSA_c12630 PF00750 tRNA synthetases class I (R) CLSA_c12640 PF01594 AI-2E family transporter CLSA_c12650 PF00881 Nitroreductase family CLSA_c12690 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLSA_c12730 PF04070 Domain of unknown function (DUF378) CLSA_c12740 PF01037 Lrp/AsnC ligand binding domain CLSA_c12740 PF13404 AsnC-type helix-turn-helix domain CLSA_c12770 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c12790 PF00733 Asparagine synthase CLSA_c12790 PF13537 Glutamine amidotransferase domain CLSA_c12830 PF00005 ABC transporter CLSA_c12850 PF00085 Thioredoxin CLSA_c12870 PF01063 Amino-transferase class IV CLSA_c12880 PF02540 NAD synthase CLSA_c12880 PF00795 Carbon-nitrogen hydrolase CLSA_c12900 PF01145 SPFH domain / Band 7 family CLSA_c12920 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLSA_c12930 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c12960 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLSA_c12960 PF02769 AIR synthase related protein, C-terminal domain CLSA_c12960 PF00586 AIR synthase related protein, N-terminal domain CLSA_c12970 PF00731 AIR carboxylase CLSA_c12980 PF01259 SAICAR synthetase CLSA_c12990 PF00156 Phosphoribosyl transferase domain CLSA_c13000 PF02769 AIR synthase related protein, C-terminal domain CLSA_c13000 PF00586 AIR synthase related protein, N-terminal domain CLSA_c13010 PF00551 Formyl transferase CLSA_c13020 PF02142 MGS-like domain CLSA_c13020 PF01808 AICARFT/IMPCHase bienzyme CLSA_c13030 PF02843 Phosphoribosylglycinamide synthetase, C domain CLSA_c13030 PF02844 Phosphoribosylglycinamide synthetase, N domain CLSA_c13030 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLSA_c13080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLSA_c13080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLSA_c13090 PF00550 Phosphopantetheine attachment site CLSA_c13100 PF03060 Nitronate monooxygenase CLSA_c13110 PF00698 Acyl transferase domain CLSA_c13130 PF00109 Beta-ketoacyl synthase, N-terminal domain CLSA_c13130 PF02801 Beta-ketoacyl synthase, C-terminal domain CLSA_c13140 PF00364 Biotin-requiring enzyme CLSA_c13150 PF07977 FabA-like domain CLSA_c13160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLSA_c13160 PF00289 Biotin carboxylase, N-terminal domain CLSA_c13160 PF02785 Biotin carboxylase C-terminal domain CLSA_c13170 PF01039 Carboxyl transferase domain CLSA_c13170 PF17848 Acetyl-coA carboxylase zinc finger domain CLSA_c13180 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLSA_c13200 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLSA_c13200 PF16193 AAA C-terminal domain CLSA_c13200 PF12002 MgsA AAA+ ATPase C terminal CLSA_c13210 PF02082 Transcriptional regulator CLSA_c13220 PF00266 Aminotransferase class-V CLSA_c13230 PF01592 NifU-like N terminal domain CLSA_c13260 PF01594 AI-2E family transporter CLSA_c13270 PF02272 DHHA1 domain CLSA_c13270 PF01411 tRNA synthetases class II (A) CLSA_c13270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLSA_c13280 PF06135 IreB regulatory phosphoprotein CLSA_c13290 PF03652 Holliday junction resolvase CLSA_c13300 PF06949 Protein of unknown function (DUF1292) CLSA_c13310 PF01475 Ferric uptake regulator family CLSA_c13320 PF00753 Metallo-beta-lactamase superfamily CLSA_c13320 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLSA_c13320 PF17770 Ribonuclease J C-terminal domain CLSA_c13340 PF02618 YceG-like family CLSA_c13370 PF00905 Penicillin binding protein transpeptidase domain CLSA_c13380 PF04545 Sigma-70, region 4 CLSA_c13380 PF04542 Sigma-70 region 2 CLSA_c13400 PF12327 FtsZ family, C-terminal domain CLSA_c13400 PF00091 Tubulin/FtsZ family, GTPase domain CLSA_c13410 PF03419 Sporulation factor SpoIIGA CLSA_c13420 PF04545 Sigma-70, region 4 CLSA_c13420 PF04542 Sigma-70 region 2 CLSA_c13430 PF04539 Sigma-70 region 3 CLSA_c13430 PF04545 Sigma-70, region 4 CLSA_c13430 PF04542 Sigma-70 region 2 CLSA_c13440 PF05239 PRC-barrel domain CLSA_c13450 PF03477 ATP cone domain CLSA_c13470 PF00486 Transcriptional regulatory protein, C terminal CLSA_c13470 PF00072 Response regulator receiver domain CLSA_c13480 PF16736 Single Cache-like CLSA_c13480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c13480 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c13480 PF00989 PAS fold CLSA_c13490 PF12849 PBP superfamily domain CLSA_c13500 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c13510 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c13520 PF00005 ABC transporter CLSA_c13530 PF01895 PhoU domain CLSA_c13550 PF01926 50S ribosome-binding GTPase CLSA_c13550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLSA_c13560 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLSA_c13560 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLSA_c13590 PF00860 Permease family CLSA_c13600 PF03755 YicC-like family, N-terminal region CLSA_c13600 PF08340 Domain of unknown function (DUF1732) CLSA_c13610 PF04025 Domain of unknown function (DUF370) CLSA_c13620 PF00625 Guanylate kinase CLSA_c13630 PF01192 RNA polymerase Rpb6 CLSA_c13640 PF02441 Flavoprotein CLSA_c13640 PF04127 DNA / pantothenate metabolism flavoprotein CLSA_c13650 PF18074 Primosomal protein N C-terminal domain CLSA_c13650 PF17764 3′ DNA-binding domain (3′BD) CLSA_c13650 PF00271 Helicase conserved C-terminal domain CLSA_c13650 PF04851 Type III restriction enzyme, res subunit CLSA_c13650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLSA_c13660 PF01327 Polypeptide deformylase CLSA_c13670 PF00551 Formyl transferase CLSA_c13670 PF02911 Formyl transferase, C-terminal domain CLSA_c13680 PF04298 Putative neutral zinc metallopeptidase CLSA_c13690 PF01029 NusB family CLSA_c13690 PF01189 16S rRNA methyltransferase RsmB/F CLSA_c13700 PF04055 Radical SAM superfamily CLSA_c13720 PF00069 Protein kinase domain CLSA_c13720 PF03793 PASTA domain CLSA_c13730 PF03193 RsgA GTPase CLSA_c13730 PF16745 RsgA N-terminal domain CLSA_c13740 PF00834 Ribulose-phosphate 3 epimerase family CLSA_c13750 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain CLSA_c13750 PF04263 Thiamin pyrophosphokinase, catalytic domain CLSA_c13760 PF00830 Ribosomal L28 family CLSA_c13770 PF03780 Asp23 family, cell envelope-related function CLSA_c13780 PF13684 Dihydroxyacetone kinase family CLSA_c13780 PF02734 DAK2 domain CLSA_c13790 PF00270 DEAD/DEAH box helicase CLSA_c13790 PF00271 Helicase conserved C-terminal domain CLSA_c13790 PF17191 RecG wedge domain CLSA_c13810 PF01467 Cytidylyltransferase-like CLSA_c13840 PF05636 HIGH Nucleotidyl Transferase CLSA_c13850 PF01515 Phosphate acetyl/butaryl transferase CLSA_c13860 PF00871 Acetokinase family CLSA_c13880 PF01783 Ribosomal L32p protein family CLSA_c13890 PF02504 Fatty acid synthesis protein CLSA_c13900 PF00550 Phosphopantetheine attachment site CLSA_c13910 PF14622 Ribonuclease-III-like CLSA_c13910 PF00035 Double-stranded RNA binding motif CLSA_c13930 PF02463 RecF/RecN/SMC N terminal domain CLSA_c13930 PF06470 SMC proteins Flexible Hinge Domain CLSA_c13940 PF02881 SRP54-type protein, helical bundle domain CLSA_c13940 PF00448 SRP54-type protein, GTPase domain CLSA_c13950 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CLSA_c13960 PF02881 SRP54-type protein, helical bundle domain CLSA_c13960 PF02978 Signal peptide binding domain CLSA_c13960 PF00448 SRP54-type protein, GTPase domain CLSA_c13970 PF00886 Ribosomal protein S16 CLSA_c13990 PF05239 PRC-barrel domain CLSA_c13990 PF01782 RimM N-terminal domain CLSA_c14000 PF01746 tRNA (Guanine-1)-methyltransferase CLSA_c14010 PF01245 Ribosomal protein L19 CLSA_c14020 PF01926 50S ribosome-binding GTPase CLSA_c14030 PF01351 Ribonuclease HII CLSA_c14040 PF00872 Transposase, Mutator family CLSA_c14050 PF02021 Uncharacterised protein family UPF0102 CLSA_c14060 PF01078 Magnesium chelatase, subunit ChlI CLSA_c14060 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLSA_c14070 PF17782 DprA winged helix domain CLSA_c14070 PF02481 DNA recombination-mediator protein A CLSA_c14080 PF01751 Toprim domain CLSA_c14080 PF01131 DNA topoisomerase CLSA_c14080 PF01396 Topoisomerase DNA binding C4 zinc finger CLSA_c14090 PF08222 CodY helix-turn-helix domain CLSA_c14090 PF06018 CodY GAF-like domain CLSA_c14100 PF00318 Ribosomal protein S2 CLSA_c14110 PF00889 Elongation factor TS CLSA_c14120 PF00696 Amino acid kinase family CLSA_c14130 PF01765 Ribosome recycling factor CLSA_c14140 PF01255 Putative undecaprenyl diphosphate synthase CLSA_c14170 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLSA_c14170 PF13288 DXP reductoisomerase C-terminal domain CLSA_c14170 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLSA_c14290 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLSA_c14290 PF01348 Type II intron maturase CLSA_c14350 PF02163 Peptidase family M50 CLSA_c14350 PF13180 PDZ domain CLSA_c14360 PF04551 GcpE protein CLSA_c14370 PF17384 RimP C-terminal SH3 domain CLSA_c14370 PF02576 RimP N-terminal domain CLSA_c14380 PF08529 NusA N-terminal domain CLSA_c14380 PF13184 NusA-like KH domain CLSA_c14380 PF00575 S1 RNA binding domain CLSA_c14390 PF04296 Protein of unknown function (DUF448) CLSA_c14410 PF04760 Translation initiation factor IF-2, N-terminal region CLSA_c14410 PF11987 Translation-initiation factor 2 CLSA_c14410 PF00009 Elongation factor Tu GTP binding domain CLSA_c14420 PF02033 Ribosome-binding factor A CLSA_c14440 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLSA_c14440 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLSA_c14450 PF06574 FAD synthetase CLSA_c14450 PF01687 Riboflavin kinase CLSA_c14460 PF00312 Ribosomal protein S15 CLSA_c14470 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLSA_c14470 PF00013 KH domain CLSA_c14470 PF03725 3' exoribonuclease family, domain 2 CLSA_c14470 PF00575 S1 RNA binding domain CLSA_c14470 PF01138 3' exoribonuclease family, domain 1 CLSA_c14480 PF00675 Insulinase (Peptidase family M16) CLSA_c14480 PF05193 Peptidase M16 inactive domain CLSA_c14500 PF00696 Amino acid kinase family CLSA_c14500 PF13840 ACT domain CLSA_c14510 PF00574 Clp protease CLSA_c14520 PF17854 FtsK alpha domain CLSA_c14520 PF09397 Ftsk gamma domain CLSA_c14520 PF01580 FtsK/SpoIIIE family CLSA_c14530 PF18693 TRAM domain CLSA_c14530 PF00919 Uncharacterized protein family UPF0004 CLSA_c14530 PF04055 Radical SAM superfamily CLSA_c14540 PF01066 CDP-alcohol phosphatidyltransferase CLSA_c14550 PF00154 recA bacterial DNA recombination protein CLSA_c14560 PF01966 HD domain CLSA_c14560 PF00013 KH domain CLSA_c14560 PF12072 Domain of unknown function (DUF3552) CLSA_c14570 PF04232 Stage V sporulation protein S (SpoVS) CLSA_c14580 PF00381 PTS HPr component phosphorylation site CLSA_c14590 PF00206 Lyase CLSA_c14590 PF10397 Adenylosuccinate lyase C-terminus CLSA_c14620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLSA_c14620 PF01872 RibD C-terminal domain CLSA_c14630 PF00677 Lumazine binding domain CLSA_c14640 PF00925 GTP cyclohydrolase II CLSA_c14640 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLSA_c14650 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLSA_c14680 PF00571 CBS domain CLSA_c14680 PF00005 ABC transporter CLSA_c14690 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c14710 PF02915 Rubrerythrin CLSA_c14720 PF00881 Nitroreductase family CLSA_c14730 PF13419 Haloacid dehalogenase-like hydrolase CLSA_c14750 PF18419 ATP-grasp-like domain CLSA_c14750 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLSA_c14750 PF04262 Glutamate-cysteine ligase CLSA_c14810 PF13685 Iron-containing alcohol dehydrogenase CLSA_c14820 PF00872 Transposase, Mutator family CLSA_c14830 PF03063 Prismane/CO dehydrogenase family CLSA_c14840 PF02082 Transcriptional regulator CLSA_c14910 PF01261 Xylose isomerase-like TIM barrel CLSA_c14930 PF03466 LysR substrate binding domain CLSA_c14930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c14940 PF01487 Type I 3-dehydroquinase CLSA_c14950 PF01584 CheW-like domain CLSA_c14950 PF00072 Response regulator receiver domain CLSA_c14970 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLSA_c14980 PF02645 Uncharacterised protein, DegV family COG1307 CLSA_c14990 PF00722 Glycosyl hydrolases family 16 CLSA_c15010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLSA_c15010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c15020 PF04456 Protein of unknown function (DUF503) CLSA_c15030 PF01638 HxlR-like helix-turn-helix CLSA_c15050 PF00579 tRNA synthetases class I (W and Y) CLSA_c15050 PF01479 S4 domain CLSA_c15060 PF00232 Glycosyl hydrolase family 1 CLSA_c15070 PF01594 AI-2E family transporter CLSA_c15080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLSA_c15100 PF01965 DJ-1/PfpI family CLSA_c15110 PF08279 HTH domain CLSA_c15110 PF13280 WYL domain CLSA_c15120 PF01209 ubiE/COQ5 methyltransferase family CLSA_c15130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLSA_c15140 PF10400 Virulence activator alpha C-term CLSA_c15140 PF03551 Transcriptional regulator PadR-like family CLSA_c15150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLSA_c15150 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c15210 PF00171 Aldehyde dehydrogenase family CLSA_c15230 PF01814 Hemerythrin HHE cation binding domain CLSA_c15240 PF01432 Peptidase family M3 CLSA_c15240 PF08439 Oligopeptidase F CLSA_c15250 PF01569 PAP2 superfamily CLSA_c15280 PF00206 Lyase CLSA_c15280 PF10415 Fumarase C C-terminus CLSA_c15290 PF01037 Lrp/AsnC ligand binding domain CLSA_c15300 PF13649 Methyltransferase domain CLSA_c15330 PF01522 Polysaccharide deacetylase CLSA_c15360 PF05167 Uncharacterised ACR (DUF711) CLSA_c15390 PF04055 Radical SAM superfamily CLSA_c15390 PF11842 Domain of unknown function (DUF3362) CLSA_c15390 PF08497 Radical SAM N-terminal CLSA_c15410 PF17862 AAA+ lid domain CLSA_c15410 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c15410 PF06480 FtsH Extracellular CLSA_c15410 PF01434 Peptidase family M41 CLSA_c15420 PF03372 Endonuclease/Exonuclease/phosphatase family CLSA_c15470 PF00753 Metallo-beta-lactamase superfamily CLSA_c15510 PF00009 Elongation factor Tu GTP binding domain CLSA_c15510 PF00679 Elongation factor G C-terminus CLSA_c15510 PF14492 Elongation Factor G, domain II CLSA_c15510 PF03764 Elongation factor G, domain IV CLSA_c15530 PF00230 Major intrinsic protein CLSA_c15550 PF02734 DAK2 domain CLSA_c15560 PF05524 PEP-utilising enzyme, N-terminal CLSA_c15560 PF00391 PEP-utilising enzyme, mobile domain CLSA_c15560 PF03610 PTS system fructose IIA component CLSA_c15560 PF00381 PTS HPr component phosphorylation site CLSA_c15600 PF04055 Radical SAM superfamily CLSA_c15610 PF01227 GTP cyclohydrolase I CLSA_c15620 PF06508 Queuosine biosynthesis protein QueC CLSA_c15630 PF14489 QueF-like protein CLSA_c15680 PF00717 Peptidase S24-like CLSA_c15680 PF01726 LexA DNA binding domain CLSA_c15700 PF00892 EamA-like transporter family CLSA_c15710 PF00258 Flavodoxin CLSA_c15730 PF00293 NUDIX domain CLSA_c15740 PF05067 Manganese containing catalase CLSA_c15770 PF00293 NUDIX domain CLSA_c15770 PF01467 Cytidylyltransferase-like CLSA_c15800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLSA_c15820 PF02811 PHP domain CLSA_c15840 PF00072 Response regulator receiver domain CLSA_c15850 PF00571 CBS domain CLSA_c15870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CLSA_c15870 PF00294 pfkB family carbohydrate kinase CLSA_c15880 PF05025 RbsD / FucU transport protein family CLSA_c15890 PF00005 ABC transporter CLSA_c15900 PF02653 Branched-chain amino acid transport system / permease component CLSA_c15910 PF13407 Periplasmic binding protein domain CLSA_c15920 PF00356 Bacterial regulatory proteins, lacI family CLSA_c16050 PF01327 Polypeptide deformylase CLSA_c16110 PF00155 Aminotransferase class I and II CLSA_c16130 PF02954 Bacterial regulatory protein, Fis family CLSA_c16130 PF13426 PAS domain CLSA_c16130 PF00158 Sigma-54 interaction domain CLSA_c16140 PF00465 Iron-containing alcohol dehydrogenase CLSA_c16150 PF00175 Oxidoreductase NAD-binding domain CLSA_c16150 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLSA_c16160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLSA_c16160 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c16170 PF02632 BioY family CLSA_c16190 PF00202 Aminotransferase class-III CLSA_c16210 PF07885 Ion channel CLSA_c16210 PF00027 Cyclic nucleotide-binding domain CLSA_c16310 PF13649 Methyltransferase domain CLSA_c16320 PF01569 PAP2 superfamily CLSA_c16330 PF00072 Response regulator receiver domain CLSA_c16330 PF00486 Transcriptional regulatory protein, C terminal CLSA_c16340 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c16340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c16360 PF13493 Domain of unknown function (DUF4118) CLSA_c16360 PF02702 Osmosensitive K+ channel His kinase sensor domain CLSA_c16360 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c16360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c16370 PF16295 Tetracyclin repressor-like, C-terminal domain CLSA_c16370 PF00440 Bacterial regulatory proteins, tetR family CLSA_c16380 PF13533 Biotin-lipoyl like CLSA_c16390 PF00873 AcrB/AcrD/AcrF family CLSA_c16400 PF04055 Radical SAM superfamily CLSA_c16410 PF01228 Glycine radical CLSA_c16410 PF02901 Pyruvate formate lyase-like CLSA_c16460 PF00258 Flavodoxin CLSA_c16460 PF00301 Rubredoxin CLSA_c16460 PF00753 Metallo-beta-lactamase superfamily CLSA_c16470 PF04343 Protein of unknown function, DUF488 CLSA_c16510 PF13419 Haloacid dehalogenase-like hydrolase CLSA_c16520 PF13411 MerR HTH family regulatory protein CLSA_c16540 PF06445 GyrI-like small molecule binding domain CLSA_c16560 PF07519 Tannase and feruloyl esterase CLSA_c16650 PF02687 FtsX-like permease family CLSA_c16650 PF18075 FtsX extracellular domain CLSA_c16690 PF13407 Periplasmic binding protein domain CLSA_c16700 PF13407 Periplasmic binding protein domain CLSA_c16710 PF01022 Bacterial regulatory protein, arsR family CLSA_c16720 PF06953 Arsenical resistance operon trans-acting repressor ArsD CLSA_c16730 PF02374 Anion-transporting ATPase CLSA_c16750 PF01758 Sodium Bile acid symporter family CLSA_c16790 PF06965 Na+/H+ antiporter 1 CLSA_c16800 PF01740 STAS domain CLSA_c16800 PF00916 Sulfate permease family CLSA_c16810 PF01209 ubiE/COQ5 methyltransferase family CLSA_c16840 PF01966 HD domain CLSA_c16860 PF00163 Ribosomal protein S4/S9 N-terminal domain CLSA_c16860 PF01479 S4 domain CLSA_c16870 PF12833 Helix-turn-helix domain CLSA_c16870 PF02311 AraC-like ligand binding domain CLSA_c16880 PF00425 chorismate binding enzyme CLSA_c16900 PF00975 Thioesterase domain CLSA_c16910 PF01648 4'-phosphopantetheinyl transferase superfamily CLSA_c16920 PF00501 AMP-binding enzyme CLSA_c16920 PF13193 AMP-binding enzyme C-terminal domain CLSA_c16930 PF00668 Condensation domain CLSA_c16930 PF08242 Methyltransferase domain CLSA_c16930 PF00501 AMP-binding enzyme CLSA_c16930 PF00550 Phosphopantetheine attachment site CLSA_c16940 PF00668 Condensation domain CLSA_c16940 PF00550 Phosphopantetheine attachment site CLSA_c16940 PF00501 AMP-binding enzyme CLSA_c16940 PF08242 Methyltransferase domain CLSA_c16960 PF00668 Condensation domain CLSA_c16960 PF07993 Male sterility protein CLSA_c16960 PF13193 AMP-binding enzyme C-terminal domain CLSA_c16960 PF00501 AMP-binding enzyme CLSA_c16960 PF00550 Phosphopantetheine attachment site CLSA_c17000 PF00005 ABC transporter CLSA_c17010 PF00005 ABC transporter CLSA_c17010 PF00664 ABC transporter transmembrane region CLSA_c17020 PF00005 ABC transporter CLSA_c17020 PF00664 ABC transporter transmembrane region CLSA_c17040 PF00672 HAMP domain CLSA_c17040 PF02743 Cache domain CLSA_c17040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c17050 PF02742 Iron dependent repressor, metal binding and dimerisation domain CLSA_c17050 PF18357 Diphteria toxin repressor SH3 domain CLSA_c17050 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLSA_c17080 PF01566 Natural resistance-associated macrophage protein CLSA_c17110 PF12833 Helix-turn-helix domain CLSA_c17120 PF04954 Siderophore-interacting protein CLSA_c17120 PF08021 Siderophore-interacting FAD-binding domain CLSA_c17120 PF00005 ABC transporter CLSA_c17120 PF00664 ABC transporter transmembrane region CLSA_c17130 PF00005 ABC transporter CLSA_c17130 PF00664 ABC transporter transmembrane region CLSA_c17150 PF02001 Protein of unknown function DUF134 CLSA_c17270 PF01842 ACT domain CLSA_c17280 PF00205 Thiamine pyrophosphate enzyme, central domain CLSA_c17280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLSA_c17280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLSA_c17310 PF02559 CarD-like/TRCF domain CLSA_c17320 PF02016 LD-carboxypeptidase N-terminal domain CLSA_c17320 PF17676 LD-carboxypeptidase C-terminal domain CLSA_c17330 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain CLSA_c17330 PF00877 NlpC/P60 family CLSA_c17360 PF00682 HMGL-like CLSA_c17360 PF08502 LeuA allosteric (dimerisation) domain CLSA_c17370 PF00672 HAMP domain CLSA_c17370 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c17370 PF00989 PAS fold CLSA_c17370 PF18698 Histidine kinase sensor domain CLSA_c17380 PF00722 Glycosyl hydrolases family 16 CLSA_c17390 PF00155 Aminotransferase class I and II CLSA_c17410 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLSA_c17410 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLSA_c17430 PF03773 Predicted permease CLSA_c17520 PF00892 EamA-like transporter family CLSA_c17560 PF01891 Cobalt uptake substrate-specific transmembrane region CLSA_c17560 PF13190 PDGLE domain CLSA_c17580 PF00005 ABC transporter CLSA_c17590 PF01969 Protein of unknown function DUF111 CLSA_c17600 PF02540 NAD synthase CLSA_c17610 PF00731 AIR carboxylase CLSA_c17620 PF00271 Helicase conserved C-terminal domain CLSA_c17620 PF00270 DEAD/DEAH box helicase CLSA_c17630 PF03880 DbpA RNA binding domain CLSA_c17630 PF00270 DEAD/DEAH box helicase CLSA_c17630 PF00271 Helicase conserved C-terminal domain CLSA_c17640 PF00557 Metallopeptidase family M24 CLSA_c17650 PF16124 RecQ zinc-binding CLSA_c17650 PF00271 Helicase conserved C-terminal domain CLSA_c17650 PF00270 DEAD/DEAH box helicase CLSA_c17650 PF00570 HRDC domain CLSA_c17650 PF09382 RQC domain CLSA_c17670 PF01556 DnaJ C terminal domain CLSA_c17670 PF00226 DnaJ domain CLSA_c17670 PF00684 DnaJ central domain CLSA_c17680 PF04434 SWIM zinc finger CLSA_c17680 PF00176 SNF2 family N-terminal domain CLSA_c17680 PF00271 Helicase conserved C-terminal domain CLSA_c17690 PF04542 Sigma-70 region 2 CLSA_c17710 PF02219 Methylenetetrahydrofolate reductase CLSA_c17710 PF02574 Homocysteine S-methyltransferase CLSA_c17720 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLSA_c17720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c17730 PF13520 Amino acid permease CLSA_c17740 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c17750 PF01022 Bacterial regulatory protein, arsR family CLSA_c17760 PF00403 Heavy-metal-associated domain CLSA_c17780 PF07690 Major Facilitator Superfamily CLSA_c17800 PF08386 TAP-like protein CLSA_c17800 PF00561 alpha/beta hydrolase fold CLSA_c17810 PF03466 LysR substrate binding domain CLSA_c17810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c17820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLSA_c17820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLSA_c17830 PF00155 Aminotransferase class I and II CLSA_c17840 PF03812 2-keto-3-deoxygluconate permease CLSA_c17850 PF03123 CAT RNA binding domain CLSA_c17850 PF00874 PRD domain CLSA_c17860 PF02378 Phosphotransferase system, EIIC CLSA_c17860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLSA_c17860 PF00367 phosphotransferase system, EIIB CLSA_c17880 PF07729 FCD domain CLSA_c17880 PF00392 Bacterial regulatory proteins, gntR family CLSA_c17890 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLSA_c17890 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLSA_c17910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c17910 PF00672 HAMP domain CLSA_c17910 PF02743 Cache domain CLSA_c17920 PF01047 MarR family CLSA_c17920 PF00480 ROK family CLSA_c17930 PF01790 Prolipoprotein diacylglyceryl transferase CLSA_c17940 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c17960 PF13411 MerR HTH family regulatory protein CLSA_c17970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLSA_c17970 PF02779 Transketolase, pyrimidine binding domain CLSA_c17970 PF02780 Transketolase, C-terminal domain CLSA_c18040 PF00874 PRD domain CLSA_c18040 PF03610 PTS system fructose IIA component CLSA_c18040 PF00158 Sigma-54 interaction domain CLSA_c18060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLSA_c18070 PF03611 PTS system sugar-specific permease component CLSA_c18080 PF13685 Iron-containing alcohol dehydrogenase CLSA_c18090 PF13344 Haloacid dehalogenase-like hydrolase CLSA_c18110 PF07690 Major Facilitator Superfamily CLSA_c18130 PF02743 Cache domain CLSA_c18130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c18130 PF00672 HAMP domain CLSA_c18140 PF13407 Periplasmic binding protein domain CLSA_c18150 PF13520 Amino acid permease CLSA_c18170 PF05227 CHASE3 domain CLSA_c18170 PF00672 HAMP domain CLSA_c18170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c18180 PF00881 Nitroreductase family CLSA_c18190 PF00672 HAMP domain CLSA_c18190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c18190 PF12729 Four helix bundle sensory module for signal transduction CLSA_c18210 PF12833 Helix-turn-helix domain CLSA_c18210 PF02311 AraC-like ligand binding domain CLSA_c18240 PF13193 AMP-binding enzyme C-terminal domain CLSA_c18240 PF00550 Phosphopantetheine attachment site CLSA_c18240 PF00501 AMP-binding enzyme CLSA_c18240 PF00668 Condensation domain CLSA_c18250 PF00664 ABC transporter transmembrane region CLSA_c18250 PF00005 ABC transporter CLSA_c18260 PF00005 ABC transporter CLSA_c18260 PF00664 ABC transporter transmembrane region CLSA_c18270 PF01648 4'-phosphopantetheinyl transferase superfamily CLSA_c18290 PF13478 XdhC Rossmann domain CLSA_c18290 PF02625 XdhC and CoxI family CLSA_c18310 PF00586 AIR synthase related protein, N-terminal domain CLSA_c18310 PF02769 AIR synthase related protein, C-terminal domain CLSA_c18320 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLSA_c18330 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLSA_c18360 PF00111 2Fe-2S iron-sulfur cluster binding domain CLSA_c18360 PF01799 [2Fe-2S] binding domain CLSA_c18370 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLSA_c18370 PF01799 [2Fe-2S] binding domain CLSA_c18370 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLSA_c18380 PF02625 XdhC and CoxI family CLSA_c18380 PF13478 XdhC Rossmann domain CLSA_c18400 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c18450 PF00860 Permease family CLSA_c18510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLSA_c18520 PF13426 PAS domain CLSA_c18520 PF00072 Response regulator receiver domain CLSA_c18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c18520 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c18520 PF08448 PAS fold CLSA_c18530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLSA_c18530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLSA_c18530 PF02770 Acyl-CoA dehydrogenase, middle domain CLSA_c18540 PF00258 Flavodoxin CLSA_c18540 PF00753 Metallo-beta-lactamase superfamily CLSA_c18550 PF03960 ArsC family CLSA_c18570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c18570 PF03466 LysR substrate binding domain CLSA_c18580 PF00293 NUDIX domain CLSA_c18590 PF01061 ABC-2 type transporter CLSA_c18600 PF10415 Fumarase C C-terminus CLSA_c18600 PF00206 Lyase CLSA_c18610 PF01926 50S ribosome-binding GTPase CLSA_c18610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLSA_c18710 PF07690 Major Facilitator Superfamily CLSA_c18720 PF00324 Amino acid permease CLSA_c18730 PF03812 2-keto-3-deoxygluconate permease CLSA_c18740 PF10400 Virulence activator alpha C-term CLSA_c18740 PF03551 Transcriptional regulator PadR-like family CLSA_c18750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLSA_c18750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLSA_c18760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c18760 PF02743 Cache domain CLSA_c18760 PF00672 HAMP domain CLSA_c18800 PF02743 Cache domain CLSA_c18800 PF00672 HAMP domain CLSA_c18800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c18810 PF04445 Putative SAM-dependent methyltransferase CLSA_c18830 PF03618 Kinase/pyrophosphorylase CLSA_c18840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c18840 PF00672 HAMP domain CLSA_c18840 PF12729 Four helix bundle sensory module for signal transduction CLSA_c18850 PF13537 Glutamine amidotransferase domain CLSA_c18850 PF00733 Asparagine synthase CLSA_c18860 PF00909 Ammonium Transporter Family CLSA_c18920 PF07690 Major Facilitator Superfamily CLSA_c18930 PF01047 MarR family CLSA_c18950 PF00295 Glycosyl hydrolases family 28 CLSA_c18960 PF00690 Cation transporter/ATPase, N-terminus CLSA_c18960 PF00689 Cation transporting ATPase, C-terminus CLSA_c18990 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c18990 PF00672 HAMP domain CLSA_c18990 PF00989 PAS fold CLSA_c18990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c18990 PF18698 Histidine kinase sensor domain CLSA_c19020 PF04055 Radical SAM superfamily CLSA_c19020 PF13186 Iron-sulfur cluster-binding domain CLSA_c19040 PF01012 Electron transfer flavoprotein domain CLSA_c19050 PF01012 Electron transfer flavoprotein domain CLSA_c19050 PF00766 Electron transfer flavoprotein FAD-binding domain CLSA_c19060 PF02652 L-lactate permease CLSA_c19070 PF02913 FAD linked oxidases, C-terminal domain CLSA_c19070 PF01565 FAD binding domain CLSA_c19080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLSA_c19080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLSA_c19080 PF02770 Acyl-CoA dehydrogenase, middle domain CLSA_c19090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLSA_c19090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLSA_c19130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLSA_c19130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLSA_c19150 PF03551 Transcriptional regulator PadR-like family CLSA_c19160 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLSA_c19170 PF00005 ABC transporter CLSA_c19170 PF12848 ABC transporter CLSA_c19200 PF00248 Aldo/keto reductase family CLSA_c19270 PF00183 Hsp90 protein CLSA_c19300 PF00183 Hsp90 protein CLSA_c19360 PF03061 Thioesterase superfamily CLSA_c19370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c19370 PF12729 Four helix bundle sensory module for signal transduction CLSA_c19370 PF00672 HAMP domain CLSA_c19400 PF01520 N-acetylmuramoyl-L-alanine amidase CLSA_c19400 PF04122 Putative cell wall binding repeat 2 CLSA_c19420 PF06445 GyrI-like small molecule binding domain CLSA_c19420 PF13411 MerR HTH family regulatory protein CLSA_c19430 PF00005 ABC transporter CLSA_c19430 PF00664 ABC transporter transmembrane region CLSA_c19440 PF00005 ABC transporter CLSA_c19440 PF00664 ABC transporter transmembrane region CLSA_c19470 PF00356 Bacterial regulatory proteins, lacI family CLSA_c19500 PF02614 Glucuronate isomerase CLSA_c19510 PF01081 KDPG and KHG aldolase CLSA_c19520 PF00294 pfkB family carbohydrate kinase CLSA_c19530 PF08125 Mannitol dehydrogenase C-terminal domain CLSA_c19530 PF01232 Mannitol dehydrogenase Rossmann domain CLSA_c19540 PF08666 SAF domain CLSA_c19540 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLSA_c19560 PF03551 Transcriptional regulator PadR-like family CLSA_c19630 PF13520 Amino acid permease CLSA_c19650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c19650 PF00672 HAMP domain CLSA_c19650 PF02743 Cache domain CLSA_c19690 PF07690 Major Facilitator Superfamily CLSA_c19700 PF04397 LytTr DNA-binding domain CLSA_c19700 PF00072 Response regulator receiver domain CLSA_c19710 PF07694 5TMR of 5TMR-LYT CLSA_c19710 PF06580 Histidine kinase CLSA_c19710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c19720 PF00672 HAMP domain CLSA_c19720 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c19730 PF00486 Transcriptional regulatory protein, C terminal CLSA_c19730 PF00072 Response regulator receiver domain CLSA_c19780 PF12802 MarR family CLSA_c19790 PF01554 MatE CLSA_c19850 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLSA_c19870 PF08281 Sigma-70, region 4 CLSA_c19870 PF04542 Sigma-70 region 2 CLSA_c19890 PF00457 Glycosyl hydrolases family 11 CLSA_c20000 PF00440 Bacterial regulatory proteins, tetR family CLSA_c20020 PF01047 MarR family CLSA_c20030 PF01554 MatE CLSA_c20040 PF01739 CheR methyltransferase, SAM binding domain CLSA_c20040 PF03705 CheR methyltransferase, all-alpha domain CLSA_c20050 PF07194 P2 response regulator binding domain CLSA_c20050 PF01627 Hpt domain CLSA_c20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20050 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c20050 PF01584 CheW-like domain CLSA_c20060 PF01339 CheB methylesterase CLSA_c20060 PF00072 Response regulator receiver domain CLSA_c20070 PF01584 CheW-like domain CLSA_c20080 PF00672 HAMP domain CLSA_c20080 PF02203 Tar ligand binding domain homologue CLSA_c20080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c20090 PF00005 ABC transporter CLSA_c20120 PF00005 ABC transporter CLSA_c20140 PF00486 Transcriptional regulatory protein, C terminal CLSA_c20140 PF00072 Response regulator receiver domain CLSA_c20150 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c20150 PF00989 PAS fold CLSA_c20150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20230 PF00486 Transcriptional regulatory protein, C terminal CLSA_c20230 PF00072 Response regulator receiver domain CLSA_c20240 PF00005 ABC transporter CLSA_c20270 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c20270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20300 PF02311 AraC-like ligand binding domain CLSA_c20300 PF12833 Helix-turn-helix domain CLSA_c20310 PF00892 EamA-like transporter family CLSA_c20340 PF00005 ABC transporter CLSA_c20340 PF12848 ABC transporter CLSA_c20360 PF08331 Domain of unknown function (DUF1730) CLSA_c20370 PF07694 5TMR of 5TMR-LYT CLSA_c20370 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c20380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c20380 PF00672 HAMP domain CLSA_c20390 PF01584 CheW-like domain CLSA_c20400 PF00072 Response regulator receiver domain CLSA_c20400 PF01339 CheB methylesterase CLSA_c20420 PF01739 CheR methyltransferase, SAM binding domain CLSA_c20420 PF03705 CheR methyltransferase, all-alpha domain CLSA_c20430 PF00072 Response regulator receiver domain CLSA_c20430 PF01339 CheB methylesterase CLSA_c20440 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c20440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20440 PF01627 Hpt domain CLSA_c20440 PF07194 P2 response regulator binding domain CLSA_c20440 PF01584 CheW-like domain CLSA_c20450 PF00072 Response regulator receiver domain CLSA_c20480 PF01740 STAS domain CLSA_c20490 PF01740 STAS domain CLSA_c20500 PF13581 Histidine kinase-like ATPase domain CLSA_c20520 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c20520 PF00989 PAS fold CLSA_c20520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20530 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c20530 PF01584 CheW-like domain CLSA_c20530 PF01627 Hpt domain CLSA_c20530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20530 PF07194 P2 response regulator binding domain CLSA_c20540 PF00486 Transcriptional regulatory protein, C terminal CLSA_c20540 PF00072 Response regulator receiver domain CLSA_c20560 PF13614 AAA domain CLSA_c20570 PF01584 CheW-like domain CLSA_c20580 PF00072 Response regulator receiver domain CLSA_c20590 PF00872 Transposase, Mutator family CLSA_c20630 PF00158 Sigma-54 interaction domain CLSA_c20630 PF00874 PRD domain CLSA_c20630 PF03610 PTS system fructose IIA component CLSA_c20640 PF03610 PTS system fructose IIA component CLSA_c20640 PF03830 PTS system sorbose subfamily IIB component CLSA_c20650 PF03610 PTS system fructose IIA component CLSA_c20650 PF03830 PTS system sorbose subfamily IIB component CLSA_c20660 PF03609 PTS system sorbose-specific iic component CLSA_c20670 PF03613 PTS system mannose/fructose/sorbose family IID component CLSA_c20680 PF08244 Glycosyl hydrolases family 32 C terminal CLSA_c20680 PF00251 Glycosyl hydrolases family 32 N-terminal domain CLSA_c20680 PF02368 Bacterial Ig-like domain (group 2) CLSA_c20680 PF02210 Laminin G domain CLSA_c20700 PF00356 Bacterial regulatory proteins, lacI family CLSA_c20730 PF01047 MarR family CLSA_c20750 PF02525 Flavodoxin-like fold CLSA_c20800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c20800 PF00672 HAMP domain CLSA_c20800 PF02743 Cache domain CLSA_c20810 PF01740 STAS domain CLSA_c20840 PF00155 Aminotransferase class I and II CLSA_c20850 PF00486 Transcriptional regulatory protein, C terminal CLSA_c20850 PF00072 Response regulator receiver domain CLSA_c20860 PF00005 ABC transporter CLSA_c20880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20880 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c20910 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLSA_c20930 PF00580 UvrD/REP helicase N-terminal domain CLSA_c20930 PF12705 PD-(D/E)XK nuclease superfamily CLSA_c20930 PF13361 UvrD-like helicase C-terminal domain CLSA_c20960 PF00072 Response regulator receiver domain CLSA_c20960 PF00486 Transcriptional regulatory protein, C terminal CLSA_c20980 PF18698 Histidine kinase sensor domain CLSA_c20980 PF00672 HAMP domain CLSA_c20980 PF00989 PAS fold CLSA_c20980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c20980 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c20990 PF12704 MacB-like periplasmic core domain CLSA_c20990 PF00005 ABC transporter CLSA_c20990 PF02687 FtsX-like permease family CLSA_c21070 PF00403 Heavy-metal-associated domain CLSA_c21080 PF02583 Metal-sensitive transcriptional repressor CLSA_c21090 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c21110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLSA_c21120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLSA_c21120 PF00005 ABC transporter CLSA_c21130 PF00005 ABC transporter CLSA_c21130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLSA_c21220 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CLSA_c21250 PF00005 ABC transporter CLSA_c21260 PF00486 Transcriptional regulatory protein, C terminal CLSA_c21260 PF00072 Response regulator receiver domain CLSA_c21270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c21270 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c21300 PF02558 Ketopantoate reductase PanE/ApbA CLSA_c21300 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLSA_c21310 PF02660 Glycerol-3-phosphate acyltransferase CLSA_c21380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLSA_c21380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLSA_c21390 PF04198 Putative sugar-binding domain CLSA_c21390 PF00325 Bacterial regulatory proteins, crp family CLSA_c21400 PF00005 ABC transporter CLSA_c21410 PF02653 Branched-chain amino acid transport system / permease component CLSA_c21420 PF02653 Branched-chain amino acid transport system / permease component CLSA_c21430 PF13407 Periplasmic binding protein domain CLSA_c21450 PF00072 Response regulator receiver domain CLSA_c21460 PF04307 LexA-binding, inner membrane-associated putative hydrolase CLSA_c21500 PF09861 Lactate racemase N-terminal domain CLSA_c21520 PF00665 Integrase core domain CLSA_c21520 PF13276 HTH-like domain CLSA_c21520 PF13333 Integrase core domain CLSA_c21540 PF00226 DnaJ domain CLSA_c21540 PF00684 DnaJ central domain CLSA_c21540 PF01556 DnaJ C terminal domain CLSA_c21570 PF07690 Major Facilitator Superfamily CLSA_c21580 PF01048 Phosphorylase superfamily CLSA_c21610 PF00005 ABC transporter CLSA_c21620 PF00005 ABC transporter CLSA_c21630 PF00563 EAL domain CLSA_c21630 PF01590 GAF domain CLSA_c21630 PF00360 Phytochrome region CLSA_c21630 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c21640 PF00375 Sodium:dicarboxylate symporter family CLSA_c21650 PF01554 MatE CLSA_c21660 PF00580 UvrD/REP helicase N-terminal domain CLSA_c21660 PF13361 UvrD-like helicase C-terminal domain CLSA_c21680 PF00486 Transcriptional regulatory protein, C terminal CLSA_c21680 PF00072 Response regulator receiver domain CLSA_c21700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c21700 PF00989 PAS fold CLSA_c21700 PF16736 Single Cache-like CLSA_c21700 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c21720 PF02311 AraC-like ligand binding domain CLSA_c21720 PF12833 Helix-turn-helix domain CLSA_c21760 PF01022 Bacterial regulatory protein, arsR family CLSA_c21790 PF12838 4Fe-4S dicluster domain CLSA_c21790 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLSA_c21790 PF02256 Iron hydrogenase small subunit CLSA_c21820 PF01207 Dihydrouridine synthase (Dus) CLSA_c21830 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c21840 PF00075 RNase H CLSA_c21870 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c21870 PF00072 Response regulator receiver domain CLSA_c21880 PF13407 Periplasmic binding protein domain CLSA_c21890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c21890 PF18698 Histidine kinase sensor domain CLSA_c21890 PF00989 PAS fold CLSA_c21890 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c21890 PF00672 HAMP domain CLSA_c21900 PF13407 Periplasmic binding protein domain CLSA_c21910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLSA_c21910 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c21910 PF01627 Hpt domain CLSA_c21910 PF00672 HAMP domain CLSA_c21910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c21910 PF00072 Response regulator receiver domain CLSA_c21920 PF03705 CheR methyltransferase, all-alpha domain CLSA_c21920 PF01739 CheR methyltransferase, SAM binding domain CLSA_c21940 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CLSA_c21950 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLSA_c21950 PF14480 DNA polymerase III polC-type N-terminus I CLSA_c21950 PF11490 DNA polymerase III polC-type N-terminus II CLSA_c21950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLSA_c21950 PF14579 Helix-hairpin-helix motif CLSA_c21950 PF01336 OB-fold nucleic acid binding domain CLSA_c21950 PF02811 PHP domain CLSA_c21950 PF00929 Exonuclease CLSA_c21970 PF00664 ABC transporter transmembrane region CLSA_c21970 PF00005 ABC transporter CLSA_c21980 PF06725 3D domain CLSA_c21980 PF01476 LysM domain CLSA_c21990 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c22000 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c22010 PF00005 ABC transporter CLSA_c22030 PF00072 Response regulator receiver domain CLSA_c22040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLSA_c22040 PF00072 Response regulator receiver domain CLSA_c22040 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c22040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c22040 PF01627 Hpt domain CLSA_c22040 PF00672 HAMP domain CLSA_c22050 PF00072 Response regulator receiver domain CLSA_c22060 PF08239 Bacterial SH3 domain CLSA_c22060 PF01183 Glycosyl hydrolases family 25 CLSA_c22070 PF01479 S4 domain CLSA_c22070 PF00849 RNA pseudouridylate synthase CLSA_c22110 PF03830 PTS system sorbose subfamily IIB component CLSA_c22110 PF03610 PTS system fructose IIA component CLSA_c22120 PF03609 PTS system sorbose-specific iic component CLSA_c22130 PF03613 PTS system mannose/fructose/sorbose family IID component CLSA_c22140 PF08220 DeoR-like helix-turn-helix domain CLSA_c22140 PF00455 DeoR C terminal sensor domain CLSA_c22150 PF00294 pfkB family carbohydrate kinase CLSA_c22160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLSA_c22160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLSA_c22190 PF13276 HTH-like domain CLSA_c22190 PF00665 Integrase core domain CLSA_c22190 PF13333 Integrase core domain CLSA_c22210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLSA_c22210 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLSA_c22210 PF10371 Domain of unknown function CLSA_c22210 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLSA_c22210 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLSA_c22230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLSA_c22230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLSA_c22260 PF00005 ABC transporter CLSA_c22290 PF02645 Uncharacterised protein, DegV family COG1307 CLSA_c22320 PF02224 Cytidylate kinase CLSA_c22330 PF00575 S1 RNA binding domain CLSA_c22330 PF02401 LytB protein CLSA_c22370 PF01938 TRAM domain CLSA_c22370 PF00919 Uncharacterized protein family UPF0004 CLSA_c22370 PF04055 Radical SAM superfamily CLSA_c22420 PF04073 Aminoacyl-tRNA editing domain CLSA_c22430 PF00589 Phage integrase family CLSA_c22430 PF02899 Phage integrase, N-terminal SAM-like domain CLSA_c22460 PF01726 LexA DNA binding domain CLSA_c22460 PF00717 Peptidase S24-like CLSA_c22470 PF06838 Methionine gamma-lyase CLSA_c22480 PF17209 Hfq protein CLSA_c22500 PF08676 MutL C terminal dimerisation domain CLSA_c22500 PF01119 DNA mismatch repair protein, C-terminal domain CLSA_c22540 PF00501 AMP-binding enzyme CLSA_c22540 PF13193 AMP-binding enzyme C-terminal domain CLSA_c22560 PF01012 Electron transfer flavoprotein domain CLSA_c22560 PF00766 Electron transfer flavoprotein FAD-binding domain CLSA_c22570 PF01012 Electron transfer flavoprotein domain CLSA_c22580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLSA_c22580 PF02770 Acyl-CoA dehydrogenase, middle domain CLSA_c22580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLSA_c22590 PF02515 CoA-transferase family III CLSA_c22600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLSA_c22600 PF02770 Acyl-CoA dehydrogenase, middle domain CLSA_c22600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLSA_c22610 PF00962 Adenosine/AMP deaminase CLSA_c22620 PF00860 Permease family CLSA_c22640 PF05188 MutS domain II CLSA_c22640 PF05190 MutS family domain IV CLSA_c22640 PF00488 MutS domain V CLSA_c22640 PF01624 MutS domain I CLSA_c22640 PF05192 MutS domain III CLSA_c22700 PF02261 Aspartate decarboxylase CLSA_c22720 PF02548 Ketopantoate hydroxymethyltransferase CLSA_c22740 PF00171 Aldehyde dehydrogenase family CLSA_c22750 PF17770 Ribonuclease J C-terminal domain CLSA_c22750 PF00753 Metallo-beta-lactamase superfamily CLSA_c22750 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLSA_c22770 PF01925 Sulfite exporter TauE/SafE CLSA_c22830 PF00665 Integrase core domain CLSA_c22830 PF13276 HTH-like domain CLSA_c22830 PF13333 Integrase core domain CLSA_c23010 PF00877 NlpC/P60 family CLSA_c23160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLSA_c23160 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c23210 PF00486 Transcriptional regulatory protein, C terminal CLSA_c23210 PF00072 Response regulator receiver domain CLSA_c23220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLSA_c23220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c23220 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c23220 PF00672 HAMP domain CLSA_c23220 PF00072 Response regulator receiver domain CLSA_c23220 PF01627 Hpt domain CLSA_c23230 PF00440 Bacterial regulatory proteins, tetR family CLSA_c23230 PF02909 Tetracyclin repressor-like, C-terminal domain CLSA_c23250 PF01339 CheB methylesterase CLSA_c23250 PF00072 Response regulator receiver domain CLSA_c23260 PF01739 CheR methyltransferase, SAM binding domain CLSA_c23260 PF03705 CheR methyltransferase, all-alpha domain CLSA_c23270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c23270 PF00672 HAMP domain CLSA_c23280 PF01584 CheW-like domain CLSA_c23280 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c23280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c23280 PF01627 Hpt domain CLSA_c23280 PF07194 P2 response regulator binding domain CLSA_c23290 PF01584 CheW-like domain CLSA_c23300 PF00072 Response regulator receiver domain CLSA_c23310 PF18698 Histidine kinase sensor domain CLSA_c23310 PF00672 HAMP domain CLSA_c23310 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c23310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c23310 PF00989 PAS fold CLSA_c23320 PF00486 Transcriptional regulatory protein, C terminal CLSA_c23320 PF00072 Response regulator receiver domain CLSA_c23360 PF00403 Heavy-metal-associated domain CLSA_c23380 PF00403 Heavy-metal-associated domain CLSA_c23390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c23390 PF18719 ArlS sensor domain CLSA_c23390 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c23400 PF00072 Response regulator receiver domain CLSA_c23400 PF00486 Transcriptional regulatory protein, C terminal CLSA_c23420 PF01613 Flavin reductase like domain CLSA_c23430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLSA_c23430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLSA_c23440 PF02308 MgtC family CLSA_c23450 PF00271 Helicase conserved C-terminal domain CLSA_c23450 PF00176 SNF2 family N-terminal domain CLSA_c23450 PF04434 SWIM zinc finger CLSA_c23470 PF00005 ABC transporter CLSA_c23470 PF16326 ABC transporter C-terminal domain CLSA_c23470 PF12848 ABC transporter CLSA_c23500 PF01116 Fructose-bisphosphate aldolase class-II CLSA_c23520 PF02632 BioY family CLSA_c23560 PF00290 Tryptophan synthase alpha chain CLSA_c23570 PF00291 Pyridoxal-phosphate dependent enzyme CLSA_c23580 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLSA_c23590 PF00218 Indole-3-glycerol phosphate synthase CLSA_c23600 PF00591 Glycosyl transferase family, a/b domain CLSA_c23600 PF02885 Glycosyl transferase family, helical bundle domain CLSA_c23610 PF00591 Glycosyl transferase family, a/b domain CLSA_c23610 PF02885 Glycosyl transferase family, helical bundle domain CLSA_c23610 PF00117 Glutamine amidotransferase class-I CLSA_c23630 PF02082 Transcriptional regulator CLSA_c23640 PF00270 DEAD/DEAH box helicase CLSA_c23640 PF00271 Helicase conserved C-terminal domain CLSA_c23660 PF00300 Histidine phosphatase superfamily (branch 1) CLSA_c23730 PF01726 LexA DNA binding domain CLSA_c23730 PF00717 Peptidase S24-like CLSA_c23740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLSA_c23750 PF00872 Transposase, Mutator family CLSA_c23760 PF00037 4Fe-4S binding domain CLSA_c23760 PF02256 Iron hydrogenase small subunit CLSA_c23760 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLSA_c23760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLSA_c23770 PF01384 Phosphate transporter family CLSA_c23780 PF01865 Protein of unknown function DUF47 CLSA_c23840 PF01546 Peptidase family M20/M25/M40 CLSA_c23840 PF07687 Peptidase dimerisation domain CLSA_c23850 PF01546 Peptidase family M20/M25/M40 CLSA_c23930 PF08141 Small acid-soluble spore protein H family CLSA_c23950 PF01434 Peptidase family M41 CLSA_c23950 PF17862 AAA+ lid domain CLSA_c23950 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c23990 PF00455 DeoR C terminal sensor domain CLSA_c23990 PF08220 DeoR-like helix-turn-helix domain CLSA_c24000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLSA_c24000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLSA_c24010 PF00672 HAMP domain CLSA_c24010 PF02743 Cache domain CLSA_c24010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c24030 PF06445 GyrI-like small molecule binding domain CLSA_c24030 PF13411 MerR HTH family regulatory protein CLSA_c24040 PF01554 MatE CLSA_c24060 PF01613 Flavin reductase like domain CLSA_c24060 PF00301 Rubredoxin CLSA_c24080 PF00324 Amino acid permease CLSA_c24100 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c24120 PF00005 ABC transporter CLSA_c24140 PF01183 Glycosyl hydrolases family 25 CLSA_c24140 PF08239 Bacterial SH3 domain CLSA_c24150 PF01339 CheB methylesterase CLSA_c24150 PF00072 Response regulator receiver domain CLSA_c24160 PF01739 CheR methyltransferase, SAM binding domain CLSA_c24160 PF03705 CheR methyltransferase, all-alpha domain CLSA_c24180 PF01584 CheW-like domain CLSA_c24190 PF07194 P2 response regulator binding domain CLSA_c24190 PF01627 Hpt domain CLSA_c24190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c24190 PF01584 CheW-like domain CLSA_c24190 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c24200 PF00072 Response regulator receiver domain CLSA_c24230 PF13333 Integrase core domain CLSA_c24230 PF13276 HTH-like domain CLSA_c24230 PF00665 Integrase core domain CLSA_c24260 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c24260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLSA_c24280 PF00722 Glycosyl hydrolases family 16 CLSA_c24310 PF01676 Metalloenzyme superfamily CLSA_c24320 PF01048 Phosphorylase superfamily CLSA_c24330 PF01773 Na+ dependent nucleoside transporter N-terminus CLSA_c24330 PF07662 Na+ dependent nucleoside transporter C-terminus CLSA_c24340 PF01048 Phosphorylase superfamily CLSA_c24350 PF07729 FCD domain CLSA_c24350 PF00392 Bacterial regulatory proteins, gntR family CLSA_c24360 PF01773 Na+ dependent nucleoside transporter N-terminus CLSA_c24360 PF07662 Na+ dependent nucleoside transporter C-terminus CLSA_c24420 PF01209 ubiE/COQ5 methyltransferase family CLSA_c24430 PF00753 Metallo-beta-lactamase superfamily CLSA_c24430 PF16123 Hydroxyacylglutathione hydrolase C-terminus CLSA_c24450 PF00324 Amino acid permease CLSA_c24470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c24470 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c24480 PF00486 Transcriptional regulatory protein, C terminal CLSA_c24480 PF00072 Response regulator receiver domain CLSA_c24510 PF00005 ABC transporter CLSA_c24520 PF00005 ABC transporter CLSA_c24530 PF09084 NMT1/THI5 like CLSA_c24540 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c24550 PF01910 Thiamine-binding protein CLSA_c24560 PF01026 TatD related DNase CLSA_c24580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c24580 PF16736 Single Cache-like CLSA_c24580 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c24580 PF00989 PAS fold CLSA_c24590 PF00072 Response regulator receiver domain CLSA_c24590 PF00486 Transcriptional regulatory protein, C terminal CLSA_c24630 PF00072 Response regulator receiver domain CLSA_c24660 PF01975 Survival protein SurE CLSA_c24670 PF00753 Metallo-beta-lactamase superfamily CLSA_c24680 PF00324 Amino acid permease CLSA_c24700 PF02574 Homocysteine S-methyltransferase CLSA_c24730 PF00596 Class II Aldolase and Adducin N-terminal domain CLSA_c24740 PF01144 Coenzyme A transferase CLSA_c24780 PF00892 EamA-like transporter family CLSA_c24840 PF06081 Aromatic acid exporter family member 1 CLSA_c24840 PF11728 Putative aromatic acid exporter C-terminal domain CLSA_c24850 PF00733 Asparagine synthase CLSA_c24850 PF13537 Glutamine amidotransferase domain CLSA_c24860 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c24860 PF18698 Histidine kinase sensor domain CLSA_c24860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c24860 PF00989 PAS fold CLSA_c24860 PF00672 HAMP domain CLSA_c24890 PF12729 Four helix bundle sensory module for signal transduction CLSA_c24890 PF00672 HAMP domain CLSA_c24890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c24910 PF00857 Isochorismatase family CLSA_c24930 PF09827 CRISPR associated protein Cas2 CLSA_c24940 PF01867 CRISPR associated protein Cas1 CLSA_c25010 PF07690 Major Facilitator Superfamily CLSA_c25040 PF01638 HxlR-like helix-turn-helix CLSA_c25080 PF12323 Helix-turn-helix domain CLSA_c25080 PF01385 Probable transposase CLSA_c25080 PF07282 Putative transposase DNA-binding domain CLSA_c25120 PF02581 Thiamine monophosphate synthase CLSA_c25140 PF05690 Thiazole biosynthesis protein ThiG CLSA_c25150 PF00899 ThiF family CLSA_c25170 PF09861 Lactate racemase N-terminal domain CLSA_c25180 PF05067 Manganese containing catalase CLSA_c25200 PF07859 alpha/beta hydrolase fold CLSA_c25210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLSA_c25210 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c25220 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLSA_c25230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c25230 PF03466 LysR substrate binding domain CLSA_c25260 PF01791 DeoC/LacD family aldolase CLSA_c25270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLSA_c25270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLSA_c25280 PF02666 Phosphatidylserine decarboxylase CLSA_c25290 PF06968 Biotin and Thiamin Synthesis associated domain CLSA_c25290 PF04055 Radical SAM superfamily CLSA_c25300 PF03466 LysR substrate binding domain CLSA_c25300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c25310 PF00300 Histidine phosphatase superfamily (branch 1) CLSA_c25320 PF07690 Major Facilitator Superfamily CLSA_c25330 PF00795 Carbon-nitrogen hydrolase CLSA_c25340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c25340 PF03466 LysR substrate binding domain CLSA_c25350 PF00701 Dihydrodipicolinate synthetase family CLSA_c25370 PF00155 Aminotransferase class I and II CLSA_c25370 PF00392 Bacterial regulatory proteins, gntR family CLSA_c25400 PF00149 Calcineurin-like phosphoesterase CLSA_c25410 PF00196 Bacterial regulatory proteins, luxR family CLSA_c25410 PF17874 MalT-like TPR region CLSA_c25440 PF00005 ABC transporter CLSA_c25460 PF00069 Protein kinase domain CLSA_c25460 PF03793 PASTA domain CLSA_c25490 PF01638 HxlR-like helix-turn-helix CLSA_c25540 PF00085 Thioredoxin CLSA_c25550 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c25580 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c25580 PF12464 Maltose acetyltransferase CLSA_c25610 PF02801 Beta-ketoacyl synthase, C-terminal domain CLSA_c25610 PF00109 Beta-ketoacyl synthase, N-terminal domain CLSA_c25620 PF06445 GyrI-like small molecule binding domain CLSA_c25620 PF12833 Helix-turn-helix domain CLSA_c25660 PF12437 Glutamine synthetase type III N terminal CLSA_c25660 PF00120 Glutamine synthetase, catalytic domain CLSA_c25660 PF18318 Glutamine synthetase C-terminal domain CLSA_c25680 PF07690 Major Facilitator Superfamily CLSA_c25690 PF00440 Bacterial regulatory proteins, tetR family CLSA_c25720 PF02811 PHP domain CLSA_c25730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c25730 PF00072 Response regulator receiver domain CLSA_c25730 PF08448 PAS fold CLSA_c25730 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c25730 PF13426 PAS domain CLSA_c25740 PF08239 Bacterial SH3 domain CLSA_c25740 PF01183 Glycosyl hydrolases family 25 CLSA_c25780 PF00877 NlpC/P60 family CLSA_c25790 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLSA_c25790 PF14572 Phosphoribosyl synthetase-associated domain CLSA_c25830 PF02690 Na+/Pi-cotransporter CLSA_c25840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c25890 PF00860 Permease family CLSA_c25900 PF00293 NUDIX domain CLSA_c25910 PF06177 QueT transporter CLSA_c25920 PF00156 Phosphoribosyl transferase domain CLSA_c25940 PF13307 Helicase C-terminal domain CLSA_c25940 PF04851 Type III restriction enzyme, res subunit CLSA_c25940 PF00929 Exonuclease CLSA_c25990 PF01751 Toprim domain CLSA_c25990 PF01131 DNA topoisomerase CLSA_c26010 PF07670 Nucleoside recognition CLSA_c26010 PF17910 FeoB cytosolic helical domain CLSA_c26010 PF02421 Ferrous iron transport protein B CLSA_c26010 PF07664 Ferrous iron transport protein B C terminus CLSA_c26040 PF00196 Bacterial regulatory proteins, luxR family CLSA_c26050 PF02558 Ketopantoate reductase PanE/ApbA CLSA_c26050 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLSA_c26060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c26060 PF03466 LysR substrate binding domain CLSA_c26110 PF00313 'Cold-shock' DNA-binding domain CLSA_c26160 PF05223 NTF2-like N-terminal transpeptidase domain CLSA_c26160 PF03717 Penicillin-binding Protein dimerisation domain CLSA_c26160 PF00905 Penicillin binding protein transpeptidase domain CLSA_c26170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLSA_c26190 PF13735 tRNA nucleotidyltransferase domain 2 putative CLSA_c26190 PF12627 Probable RNA and SrmB- binding site of polymerase A CLSA_c26190 PF01743 Poly A polymerase head domain CLSA_c26200 PF01418 Helix-turn-helix domain, rpiR family CLSA_c26200 PF01380 SIS domain CLSA_c26210 PF01479 S4 domain CLSA_c26210 PF00849 RNA pseudouridylate synthase CLSA_c26240 PF13520 Amino acid permease CLSA_c26300 PF13932 GidA associated domain CLSA_c26300 PF01134 Glucose inhibited division protein A CLSA_c26310 PF07943 Penicillin-binding protein 5, C-terminal domain CLSA_c26310 PF00768 D-alanyl-D-alanine carboxypeptidase CLSA_c26330 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CLSA_c26340 PF04079 Segregation and condensation complex subunit ScpB CLSA_c26350 PF02616 Segregation and condensation protein ScpA CLSA_c26360 PF00768 D-alanyl-D-alanine carboxypeptidase CLSA_c26360 PF07943 Penicillin-binding protein 5, C-terminal domain CLSA_c26370 PF12728 Helix-turn-helix domain CLSA_c26370 PF12727 PBP superfamily domain CLSA_c26390 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c26400 PF00005 ABC transporter CLSA_c26420 PF00994 Probable molybdopterin binding domain CLSA_c26440 PF04055 Radical SAM superfamily CLSA_c26440 PF06463 Molybdenum Cofactor Synthesis C CLSA_c26460 PF01967 MoaC family CLSA_c26470 PF03454 MoeA C-terminal region (domain IV) CLSA_c26470 PF03453 MoeA N-terminal region (domain I and II) CLSA_c26470 PF00994 Probable molybdopterin binding domain CLSA_c26480 PF02464 Competence-damaged protein CLSA_c26480 PF00994 Probable molybdopterin binding domain CLSA_c26490 PF12804 MobA-like NTP transferase domain CLSA_c26530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLSA_c26530 PF00384 Molybdopterin oxidoreductase CLSA_c26530 PF01568 Molydopterin dinucleotide binding domain CLSA_c26540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLSA_c26540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLSA_c26540 PF13187 4Fe-4S dicluster domain CLSA_c26550 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLSA_c26550 PF00175 Oxidoreductase NAD-binding domain CLSA_c26560 PF17179 4Fe-4S dicluster domain CLSA_c26580 PF07690 Major Facilitator Superfamily CLSA_c26590 PF02899 Phage integrase, N-terminal SAM-like domain CLSA_c26590 PF00589 Phage integrase family CLSA_c26610 PF00860 Permease family CLSA_c26700 PF01609 Transposase DDE domain CLSA_c26710 PF00872 Transposase, Mutator family CLSA_c26750 PF07517 SecA DEAD-like domain CLSA_c26750 PF01043 SecA preprotein cross-linking domain CLSA_c26750 PF02810 SEC-C motif CLSA_c26750 PF07516 SecA Wing and Scaffold domain CLSA_c26770 PF02899 Phage integrase, N-terminal SAM-like domain CLSA_c26770 PF00589 Phage integrase family CLSA_c26780 PF00072 Response regulator receiver domain CLSA_c26780 PF08769 Sporulation initiation factor Spo0A C terminal CLSA_c26790 PF17820 PDZ domain CLSA_c26790 PF05580 SpoIVB peptidase S55 CLSA_c26800 PF13476 AAA domain CLSA_c26810 PF02863 Arginine repressor, C-terminal domain CLSA_c26810 PF01316 Arginine repressor, DNA binding domain CLSA_c26820 PF01513 ATP-NAD kinase CLSA_c26830 PF01728 FtsJ-like methyltransferase CLSA_c26830 PF01479 S4 domain CLSA_c26840 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLSA_c26840 PF02780 Transketolase, C-terminal domain CLSA_c26840 PF02779 Transketolase, pyrimidine binding domain CLSA_c26850 PF00348 Polyprenyl synthetase CLSA_c26860 PF02609 Exonuclease VII small subunit CLSA_c26870 PF13742 OB-fold nucleic acid binding domain CLSA_c26870 PF02601 Exonuclease VII, large subunit CLSA_c26880 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLSA_c26880 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLSA_c26890 PF01029 NusB family CLSA_c26900 PF03780 Asp23 family, cell envelope-related function CLSA_c26940 PF09546 Stage III sporulation protein AE (spore_III_AE) CLSA_c26950 PF06686 Stage III sporulation protein AC/AD protein family CLSA_c27000 PF01132 Elongation factor P (EF-P) OB domain CLSA_c27000 PF08207 Elongation factor P (EF-P) KOW-like domain CLSA_c27000 PF09285 Elongation factor P, C-terminal CLSA_c27120 PF00150 Cellulase (glycosyl hydrolase family 5) CLSA_c27140 PF01678 Diaminopimelate epimerase CLSA_c27160 PF01380 SIS domain CLSA_c27160 PF01418 Helix-turn-helix domain, rpiR family CLSA_c27170 PF02926 THUMP domain CLSA_c27170 PF01170 Putative RNA methylase family UPF0020 CLSA_c27180 PF00156 Phosphoribosyl transferase domain CLSA_c27190 PF00849 RNA pseudouridylate synthase CLSA_c27190 PF01479 S4 domain CLSA_c27200 PF05103 DivIVA protein CLSA_c27210 PF01479 S4 domain CLSA_c27210 PF17774 Putative RNA-binding domain in YlmH CLSA_c27230 PF04472 Cell division protein SepF CLSA_c27240 PF01168 Alanine racemase, N-terminal domain CLSA_c27260 PF06947 Protein of unknown function (DUF1290) CLSA_c27270 PF05949 Bacterial protein of unknown function (DUF881) CLSA_c27280 PF03799 Cell division protein FtsQ CLSA_c27280 PF08478 POTRA domain, FtsQ-type CLSA_c27290 PF01098 Cell cycle protein CLSA_c27300 PF00953 Glycosyl transferase family 4 CLSA_c27300 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLSA_c27310 PF08245 Mur ligase middle domain CLSA_c27310 PF02875 Mur ligase family, glutamate ligase domain CLSA_c27310 PF01225 Mur ligase family, catalytic domain CLSA_c27320 PF08245 Mur ligase middle domain CLSA_c27320 PF02875 Mur ligase family, glutamate ligase domain CLSA_c27320 PF01225 Mur ligase family, catalytic domain CLSA_c27330 PF03793 PASTA domain CLSA_c27330 PF03717 Penicillin-binding Protein dimerisation domain CLSA_c27330 PF00905 Penicillin binding protein transpeptidase domain CLSA_c27350 PF01795 MraW methylase family CLSA_c27370 PF03147 Ferredoxin-fold anticodon binding domain CLSA_c27370 PF01588 Putative tRNA binding domain CLSA_c27370 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLSA_c27370 PF03484 tRNA synthetase B5 domain CLSA_c27370 PF03483 B3/4 domain CLSA_c27380 PF01409 tRNA synthetases class II core domain (F) CLSA_c27380 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLSA_c27390 PF00588 SpoU rRNA Methylase family CLSA_c27390 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLSA_c27400 PF00453 Ribosomal protein L20 CLSA_c27410 PF01632 Ribosomal protein L35 CLSA_c27420 PF00707 Translation initiation factor IF-3, C-terminal domain CLSA_c27420 PF05198 Translation initiation factor IF-3, N-terminal domain CLSA_c27470 PF01430 Hsp33 protein CLSA_c27480 PF13649 Methyltransferase domain CLSA_c27500 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLSA_c27500 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLSA_c27510 PF00701 Dihydrodipicolinate synthetase family CLSA_c27520 PF05173 Dihydrodipicolinate reductase, C-terminus CLSA_c27520 PF01113 Dihydrodipicolinate reductase, N-terminus CLSA_c27540 PF06865 Pyrimidine/purine nucleoside phosphorylase CLSA_c27550 PF00155 Aminotransferase class I and II CLSA_c27560 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CLSA_c27560 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c27560 PF14602 Hexapeptide repeat of succinyl-transferase CLSA_c27580 PF01522 Polysaccharide deacetylase CLSA_c27630 PF02875 Mur ligase family, glutamate ligase domain CLSA_c27630 PF08245 Mur ligase middle domain CLSA_c27640 PF03741 Integral membrane protein TerC family CLSA_c27650 PF10458 Valyl tRNA synthetase tRNA binding arm CLSA_c27650 PF00133 tRNA synthetases class I (I, L, M and V) CLSA_c27650 PF08264 Anticodon-binding domain of tRNA CLSA_c27690 PF02016 LD-carboxypeptidase N-terminal domain CLSA_c27690 PF17676 LD-carboxypeptidase C-terminal domain CLSA_c27700 PF00596 Class II Aldolase and Adducin N-terminal domain CLSA_c27710 PF01144 Coenzyme A transferase CLSA_c27730 PF03851 UV-endonuclease UvdE CLSA_c27750 PF01545 Cation efflux family CLSA_c27750 PF16916 Dimerisation domain of Zinc Transporter CLSA_c27790 PF09992 Phosphodiester glycosidase CLSA_c27790 PF12708 Pectate lyase superfamily protein CLSA_c27810 PF01554 MatE CLSA_c27830 PF09992 Phosphodiester glycosidase CLSA_c27830 PF12708 Pectate lyase superfamily protein CLSA_c27840 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLSA_c27870 PF02631 RecX family CLSA_c27880 PF00675 Insulinase (Peptidase family M16) CLSA_c27880 PF05193 Peptidase M16 inactive domain CLSA_c27890 PF00486 Transcriptional regulatory protein, C terminal CLSA_c27890 PF00072 Response regulator receiver domain CLSA_c27900 PF00989 PAS fold CLSA_c27900 PF18698 Histidine kinase sensor domain CLSA_c27900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c27900 PF00672 HAMP domain CLSA_c27900 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c27910 PF17763 Glutaminase/Asparaginase C-terminal domain CLSA_c27910 PF00710 Asparaginase, N-terminal CLSA_c27930 PF00919 Uncharacterized protein family UPF0004 CLSA_c27930 PF01938 TRAM domain CLSA_c27930 PF04055 Radical SAM superfamily CLSA_c27950 PF00464 Serine hydroxymethyltransferase CLSA_c27960 PF06738 Putative threonine/serine exporter CLSA_c28010 PF13333 Integrase core domain CLSA_c28010 PF13276 HTH-like domain CLSA_c28010 PF00665 Integrase core domain CLSA_c28050 PF00350 Dynamin family CLSA_c28090 PF00849 RNA pseudouridylate synthase CLSA_c28090 PF01479 S4 domain CLSA_c28100 PF09154 Domain of unknown function (DUF1939) CLSA_c28100 PF00128 Alpha amylase, catalytic domain CLSA_c28120 PF13193 AMP-binding enzyme C-terminal domain CLSA_c28120 PF00501 AMP-binding enzyme CLSA_c28130 PF02803 Thiolase, C-terminal domain CLSA_c28130 PF00108 Thiolase, N-terminal domain CLSA_c28140 PF02632 BioY family CLSA_c28150 PF12848 ABC transporter CLSA_c28150 PF00005 ABC transporter CLSA_c28170 PF07690 Major Facilitator Superfamily CLSA_c28180 PF00291 Pyridoxal-phosphate dependent enzyme CLSA_c28180 PF13291 ACT domain CLSA_c28190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c28190 PF00672 HAMP domain CLSA_c28190 PF02743 Cache domain CLSA_c28210 PF13419 Haloacid dehalogenase-like hydrolase CLSA_c28220 PF00485 Phosphoribulokinase / Uridine kinase family CLSA_c28240 PF02559 CarD-like/TRCF domain CLSA_c28270 PF07690 Major Facilitator Superfamily CLSA_c28290 PF04324 BFD-like [2Fe-2S] binding domain CLSA_c28290 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c28300 PF01266 FAD dependent oxidoreductase CLSA_c28310 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLSA_c28310 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLSA_c28320 PF04309 Glycerol-3-phosphate responsive antiterminator CLSA_c28330 PF00989 PAS fold CLSA_c28330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c28330 PF00672 HAMP domain CLSA_c28330 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c28330 PF18698 Histidine kinase sensor domain CLSA_c28350 PF03447 Homoserine dehydrogenase, NAD binding domain CLSA_c28350 PF01842 ACT domain CLSA_c28350 PF00742 Homoserine dehydrogenase CLSA_c28370 PF00664 ABC transporter transmembrane region CLSA_c28370 PF00005 ABC transporter CLSA_c28380 PF00082 Subtilase family CLSA_c28450 PF13614 AAA domain CLSA_c28460 PF02706 Chain length determinant protein CLSA_c28470 PF16363 GDP-mannose 4,6 dehydratase CLSA_c28480 PF04321 RmlD substrate binding domain CLSA_c28490 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLSA_c28500 PF00483 Nucleotidyl transferase CLSA_c28540 PF13439 Glycosyltransferase Family 4 CLSA_c28540 PF00534 Glycosyl transferases group 1 CLSA_c28610 PF02397 Bacterial sugar transferase CLSA_c28640 PF01336 OB-fold nucleic acid binding domain CLSA_c28640 PF00152 tRNA synthetases class II (D, K and N) CLSA_c28640 PF02938 GAD domain CLSA_c28650 PF03129 Anticodon binding domain CLSA_c28650 PF13393 Histidyl-tRNA synthetase CLSA_c28660 PF04055 Radical SAM superfamily CLSA_c28670 PF00753 Metallo-beta-lactamase superfamily CLSA_c28680 PF02580 D-Tyr-tRNA(Tyr) deacylase CLSA_c28690 PF02824 TGS domain CLSA_c28690 PF13291 ACT domain CLSA_c28690 PF04607 Region found in RelA / SpoT proteins CLSA_c28700 PF00156 Phosphoribosyl transferase domain CLSA_c28710 PF17768 RecJ OB domain CLSA_c28710 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLSA_c28710 PF01368 DHH family CLSA_c28710 PF02272 DHHA1 domain CLSA_c28720 PF07549 SecD/SecF GG Motif CLSA_c28720 PF02355 Protein export membrane protein CLSA_c28730 PF07549 SecD/SecF GG Motif CLSA_c28730 PF02355 Protein export membrane protein CLSA_c28760 PF01702 Queuine tRNA-ribosyltransferase CLSA_c28770 PF02547 Queuosine biosynthesis protein CLSA_c28780 PF17864 RuvB AAA lid domain CLSA_c28780 PF05491 RuvB C-terminal winged helix domain CLSA_c28780 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLSA_c28790 PF01330 RuvA N terminal domain CLSA_c28790 PF07499 RuvA, C-terminal domain CLSA_c28830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c28830 PF03466 LysR substrate binding domain CLSA_c28840 PF03949 Malic enzyme, NAD binding domain CLSA_c28840 PF00390 Malic enzyme, N-terminal domain CLSA_c28850 PF00939 Sodium:sulfate symporter transmembrane region CLSA_c28860 PF08543 Phosphomethylpyrimidine kinase CLSA_c28900 PF01569 PAP2 superfamily CLSA_c28910 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c28910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c28910 PF18719 ArlS sensor domain CLSA_c28920 PF00072 Response regulator receiver domain CLSA_c28920 PF00486 Transcriptional regulatory protein, C terminal CLSA_c28930 PF07875 Coat F domain CLSA_c28950 PF08240 Alcohol dehydrogenase GroES-like domain CLSA_c28950 PF13823 Alcohol dehydrogenase GroES-associated CLSA_c28950 PF00107 Zinc-binding dehydrogenase CLSA_c28960 PF07875 Coat F domain CLSA_c28980 PF00905 Penicillin binding protein transpeptidase domain CLSA_c28980 PF00912 Transglycosylase CLSA_c29090 PF11426 Tn7 transposition regulator TnsC CLSA_c29090 PF13401 AAA domain CLSA_c29100 PF00665 Integrase core domain CLSA_c29110 PF08721 TnsA endonuclease C terminal CLSA_c29110 PF08722 TnsA endonuclease N terminal CLSA_c29120 PF01202 Shikimate kinase CLSA_c29190 PF13673 Acetyltransferase (GNAT) domain CLSA_c29340 PF11867 Domain of unknown function (DUF3387) CLSA_c29340 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLSA_c29340 PF18766 SWI2/SNF2 ATPase CLSA_c29380 PF02384 N-6 DNA Methylase CLSA_c29380 PF12161 HsdM N-terminal domain CLSA_c29470 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CLSA_c29470 PF14490 Helix-hairpin-helix containing domain CLSA_c29470 PF13538 UvrD-like helicase C-terminal domain CLSA_c29510 PF06866 Protein of unknown function (DUF1256) CLSA_c29570 PF13086 AAA domain CLSA_c29570 PF13087 AAA domain CLSA_c29570 PF13195 Protein of unknown function (DUF4011) CLSA_c29680 PF01223 DNA/RNA non-specific endonuclease CLSA_c29720 PF02368 Bacterial Ig-like domain (group 2) CLSA_c29730 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c29780 PF04865 Baseplate J-like protein CLSA_c29810 PF00877 NlpC/P60 family CLSA_c29870 PF04984 Phage tail sheath protein subtilisin-like domain CLSA_c29870 PF17481 Phage tail sheath protein beta-sandwich domain CLSA_c29870 PF17482 Phage tail sheath C-terminal domain CLSA_c29990 PF02796 Helix-turn-helix domain of resolvase CLSA_c29990 PF00239 Resolvase, N terminal domain CLSA_c30050 PF01555 DNA methylase CLSA_c30150 PF01171 PP-loop family CLSA_c30150 PF09179 TilS substrate binding domain CLSA_c30150 PF11734 TilS substrate C-terminal domain CLSA_c30250 PF18277 AbrB C-terminal domain CLSA_c30250 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLSA_c30310 PF01381 Helix-turn-helix CLSA_c30320 PF00589 Phage integrase family CLSA_c30320 PF02899 Phage integrase, N-terminal SAM-like domain CLSA_c30400 PF04542 Sigma-70 region 2 CLSA_c30400 PF08281 Sigma-70, region 4 CLSA_c30420 PF00355 Rieske [2Fe-2S] domain CLSA_c30420 PF01266 FAD dependent oxidoreductase CLSA_c30430 PF00557 Metallopeptidase family M24 CLSA_c30430 PF02810 SEC-C motif CLSA_c30440 PF01381 Helix-turn-helix CLSA_c30450 PF04015 Domain of unknown function (DUF362) CLSA_c30460 PF01595 Cyclin M transmembrane N-terminal domain CLSA_c30460 PF03471 Transporter associated domain CLSA_c30460 PF00571 CBS domain CLSA_c30470 PF01435 Peptidase family M48 CLSA_c30520 PF13344 Haloacid dehalogenase-like hydrolase CLSA_c30550 PF01661 Macro domain CLSA_c30560 PF02915 Rubrerythrin CLSA_c30580 PF00684 DnaJ central domain CLSA_c30580 PF01556 DnaJ C terminal domain CLSA_c30580 PF00226 DnaJ domain CLSA_c30600 PF00224 Pyruvate kinase, barrel domain CLSA_c30600 PF02887 Pyruvate kinase, alpha/beta domain CLSA_c30620 PF13520 Amino acid permease CLSA_c30640 PF02127 Aminopeptidase I zinc metalloprotease (M18) CLSA_c30650 PF02603 HPr Serine kinase N terminus CLSA_c30650 PF07475 HPr Serine kinase C-terminal domain CLSA_c30660 PF05979 Bacterial protein of unknown function (DUF896) CLSA_c30680 PF06949 Protein of unknown function (DUF1292) CLSA_c30720 PF02607 B12 binding domain CLSA_c30720 PF02574 Homocysteine S-methyltransferase CLSA_c30720 PF02310 B12 binding domain CLSA_c30720 PF00809 Pterin binding enzyme CLSA_c30720 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLSA_c30740 PF02664 S-Ribosylhomocysteinase (LuxS) CLSA_c30750 PF00953 Glycosyl transferase family 4 CLSA_c30760 PF01813 ATP synthase subunit D CLSA_c30770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLSA_c30770 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLSA_c30780 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLSA_c30780 PF16886 ATPsynthase alpha/beta subunit N-term extension CLSA_c30780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLSA_c30790 PF01990 ATP synthase (F/14-kDa) subunit CLSA_c30800 PF01992 ATP synthase (C/AC39) subunit CLSA_c30810 PF01991 ATP synthase (E/31 kDa) subunit CLSA_c30820 PF00137 ATP synthase subunit C CLSA_c30830 PF01496 V-type ATPase 116kDa subunit family CLSA_c30850 PF00289 Biotin carboxylase, N-terminal domain CLSA_c30850 PF02785 Biotin carboxylase C-terminal domain CLSA_c30850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLSA_c30860 PF00364 Biotin-requiring enzyme CLSA_c30870 PF02626 Carboxyltransferase domain, subdomain A and B CLSA_c30880 PF02682 Carboxyltransferase domain, subdomain C and D CLSA_c30890 PF01168 Alanine racemase, N-terminal domain CLSA_c30890 PF00842 Alanine racemase, C-terminal domain CLSA_c30900 PF03746 LamB/YcsF family CLSA_c30910 PF07286 Protein of unknown function (DUF1445) CLSA_c30930 PF01063 Amino-transferase class IV CLSA_c30950 PF01037 Lrp/AsnC ligand binding domain CLSA_c30980 PF00654 Voltage gated chloride channel CLSA_c30990 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CLSA_c31030 PF14667 Polysaccharide biosynthesis C-terminal domain CLSA_c31030 PF01943 Polysaccharide biosynthesis protein CLSA_c31040 PF00849 RNA pseudouridylate synthase CLSA_c31040 PF01479 S4 domain CLSA_c31060 PF02491 SHS2 domain inserted in FTSA CLSA_c31090 PF00580 UvrD/REP helicase N-terminal domain CLSA_c31090 PF13361 UvrD-like helicase C-terminal domain CLSA_c31100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLSA_c31100 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CLSA_c31100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CLSA_c31140 PF01475 Ferric uptake regulator family CLSA_c31190 PF01926 50S ribosome-binding GTPase CLSA_c31200 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLSA_c31200 PF05362 Lon protease (S16) C-terminal proteolytic domain CLSA_c31200 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c31210 PF05362 Lon protease (S16) C-terminal proteolytic domain CLSA_c31210 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c31220 PF10431 C-terminal, D2-small domain, of ClpB protein CLSA_c31220 PF06689 ClpX C4-type zinc finger CLSA_c31220 PF07724 AAA domain (Cdc48 subfamily) CLSA_c31230 PF00574 Clp protease CLSA_c31240 PF05697 Bacterial trigger factor protein (TF) CLSA_c31240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLSA_c31240 PF05698 Bacterial trigger factor protein (TF) C-terminus CLSA_c31270 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLSA_c31280 PF01502 Phosphoribosyl-AMP cyclohydrolase CLSA_c31290 PF00977 Histidine biosynthesis protein CLSA_c31300 PF00977 Histidine biosynthesis protein CLSA_c31310 PF00117 Glutamine amidotransferase class-I CLSA_c31320 PF00475 Imidazoleglycerol-phosphate dehydratase CLSA_c31330 PF00155 Aminotransferase class I and II CLSA_c31340 PF00815 Histidinol dehydrogenase CLSA_c31350 PF01634 ATP phosphoribosyltransferase CLSA_c31360 PF13393 Histidyl-tRNA synthetase CLSA_c31380 PF02568 Thiamine biosynthesis protein (ThiI) CLSA_c31380 PF02926 THUMP domain CLSA_c31390 PF00266 Aminotransferase class-V CLSA_c31400 PF01966 HD domain CLSA_c31400 PF11871 Domain of unknown function (DUF3391) CLSA_c31450 PF04542 Sigma-70 region 2 CLSA_c31450 PF08281 Sigma-70, region 4 CLSA_c31460 PF00375 Sodium:dicarboxylate symporter family CLSA_c31470 PF08245 Mur ligase middle domain CLSA_c31470 PF02875 Mur ligase family, glutamate ligase domain CLSA_c31470 PF01225 Mur ligase family, catalytic domain CLSA_c31480 PF12833 Helix-turn-helix domain CLSA_c31500 PF13291 ACT domain CLSA_c31510 PF00288 GHMP kinases N terminal domain CLSA_c31510 PF08544 GHMP kinases C terminal CLSA_c31520 PF00291 Pyridoxal-phosphate dependent enzyme CLSA_c31560 PF02677 Epoxyqueuosine reductase QueH CLSA_c31580 PF03734 L,D-transpeptidase catalytic domain CLSA_c31590 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c31590 PF00672 HAMP domain CLSA_c31590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c31600 PF00486 Transcriptional regulatory protein, C terminal CLSA_c31600 PF00072 Response regulator receiver domain CLSA_c31640 PF00056 lactate/malate dehydrogenase, NAD binding domain CLSA_c31640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLSA_c31650 PF00202 Aminotransferase class-III CLSA_c31660 PF00490 Delta-aminolevulinic acid dehydratase CLSA_c31680 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLSA_c31680 PF03900 Porphobilinogen deaminase, C-terminal domain CLSA_c31700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CLSA_c31700 PF01488 Shikimate / quinate 5-dehydrogenase CLSA_c31700 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CLSA_c31850 PF01255 Putative undecaprenyl diphosphate synthase CLSA_c31870 PF04204 Homoserine O-succinyltransferase CLSA_c31880 PF10282 Lactonase, 7-bladed beta-propeller CLSA_c31890 PF13382 Adenine deaminase C-terminal domain CLSA_c31890 PF01979 Amidohydrolase family CLSA_c31900 PF00072 Response regulator receiver domain CLSA_c31920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLSA_c31920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLSA_c31960 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLSA_c31980 PF00155 Aminotransferase class I and II CLSA_c31990 PF03186 CobD/Cbib protein CLSA_c32020 PF02654 Cobalamin-5-phosphate synthase CLSA_c32030 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CLSA_c32050 PF12557 Cob(I)alamin adenosyltransferase N terminal CLSA_c32050 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CLSA_c32070 PF12558 ATP-binding cassette cobalt transporter CLSA_c32070 PF00005 ABC transporter CLSA_c32080 PF07155 ECF-type riboflavin transporter, S component CLSA_c32090 PF02277 Phosphoribosyltransferase CLSA_c32130 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLSA_c32130 PF13457 GW (Gly-Tryp) dipeptide domain CLSA_c32140 PF02571 Precorrin-6x reductase CbiJ/CobK CLSA_c32150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c32180 PF00072 Response regulator receiver domain CLSA_c32190 PF00989 PAS fold CLSA_c32190 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLSA_c32190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c32190 PF17203 Single cache domain 3 CLSA_c32200 PF00871 Acetokinase family CLSA_c32210 PF03812 2-keto-3-deoxygluconate permease CLSA_c32220 PF00390 Malic enzyme, N-terminal domain CLSA_c32220 PF03949 Malic enzyme, NAD binding domain CLSA_c32240 PF13186 Iron-sulfur cluster-binding domain CLSA_c32240 PF04055 Radical SAM superfamily CLSA_c32260 PF01871 AMMECR1 CLSA_c32260 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CLSA_c32300 PF02705 K+ potassium transporter CLSA_c32310 PF16353 Domain of unknown function(DUF4981) CLSA_c32310 PF02929 Beta galactosidase small chain CLSA_c32310 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CLSA_c32310 PF00703 Glycosyl hydrolases family 2 CLSA_c32310 PF02837 Glycosyl hydrolases family 2, sugar binding domain CLSA_c32320 PF00672 HAMP domain CLSA_c32320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c32320 PF02743 Cache domain CLSA_c32340 PF01699 Sodium/calcium exchanger protein CLSA_c32370 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c32370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c32370 PF00672 HAMP domain CLSA_c32370 PF13426 PAS domain CLSA_c32380 PF00072 Response regulator receiver domain CLSA_c32380 PF00486 Transcriptional regulatory protein, C terminal CLSA_c32400 PF04011 LemA family CLSA_c32420 PF01544 CorA-like Mg2+ transporter protein CLSA_c32430 PF01890 Cobalamin synthesis G C-terminus CLSA_c32430 PF11761 Cobalamin biosynthesis central region CLSA_c32430 PF11760 Cobalamin synthesis G N-terminal CLSA_c32440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c32450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c32460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c32470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c32470 PF14824 Sirohaem biosynthesis protein central CLSA_c32470 PF10414 Sirohaem synthase dimerisation region CLSA_c32480 PF01888 CbiD CLSA_c32500 PF02570 Precorrin-8X methylmutase CLSA_c32510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLSA_c32510 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLSA_c32520 PF06180 Cobalt chelatase (CbiK) CLSA_c32530 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c32530 PF00072 Response regulator receiver domain CLSA_c32540 PF01048 Phosphorylase superfamily CLSA_c32560 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CLSA_c32560 PF02018 Carbohydrate binding domain CLSA_c32570 PF02535 ZIP Zinc transporter CLSA_c32650 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c32650 PF00989 PAS fold CLSA_c32650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c32650 PF00672 HAMP domain CLSA_c32650 PF18698 Histidine kinase sensor domain CLSA_c32660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c32660 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c32660 PF08448 PAS fold CLSA_c32660 PF13426 PAS domain CLSA_c32660 PF00072 Response regulator receiver domain CLSA_c32680 PF16916 Dimerisation domain of Zinc Transporter CLSA_c32680 PF01545 Cation efflux family CLSA_c32690 PF01497 Periplasmic binding protein CLSA_c32700 PF01032 FecCD transport family CLSA_c32710 PF00005 ABC transporter CLSA_c32720 PF00872 Transposase, Mutator family CLSA_c32730 PF01717 Cobalamin-independent synthase, Catalytic domain CLSA_c32740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c32740 PF03466 LysR substrate binding domain CLSA_c32760 PF01891 Cobalt uptake substrate-specific transmembrane region CLSA_c32770 PF00005 ABC transporter CLSA_c32790 PF01979 Amidohydrolase family CLSA_c32860 PF00654 Voltage gated chloride channel CLSA_c32870 PF04397 LytTr DNA-binding domain CLSA_c32870 PF00072 Response regulator receiver domain CLSA_c32890 PF12127 SigmaW regulon antibacterial CLSA_c32910 PF00672 HAMP domain CLSA_c32910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c32910 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c32920 PF03466 LysR substrate binding domain CLSA_c32920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c32930 PF00892 EamA-like transporter family CLSA_c32970 PF02780 Transketolase, C-terminal domain CLSA_c32970 PF00456 Transketolase, thiamine diphosphate binding domain CLSA_c32970 PF02779 Transketolase, pyrimidine binding domain CLSA_c32980 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLSA_c32990 PF00480 ROK family CLSA_c33000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLSA_c33000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLSA_c33010 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c33020 PF04239 Protein of unknown function (DUF421) CLSA_c33050 PF04239 Protein of unknown function (DUF421) CLSA_c33060 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLSA_c33070 PF07451 Stage V sporulation protein AD (SpoVAD) CLSA_c33080 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLSA_c33110 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLSA_c33110 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLSA_c33130 PF13407 Periplasmic binding protein domain CLSA_c33160 PF02742 Iron dependent repressor, metal binding and dimerisation domain CLSA_c33160 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLSA_c33170 PF01566 Natural resistance-associated macrophage protein CLSA_c33180 PF06965 Na+/H+ antiporter 1 CLSA_c33190 PF01595 Cyclin M transmembrane N-terminal domain CLSA_c33190 PF03471 Transporter associated domain CLSA_c33190 PF00571 CBS domain CLSA_c33200 PF00543 Nitrogen regulatory protein P-II CLSA_c33210 PF00005 ABC transporter CLSA_c33220 PF00005 ABC transporter CLSA_c33220 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLSA_c33230 PF11862 Domain of unknown function (DUF3382) CLSA_c33230 PF02653 Branched-chain amino acid transport system / permease component CLSA_c33240 PF02653 Branched-chain amino acid transport system / permease component CLSA_c33250 PF13458 Periplasmic binding protein CLSA_c33260 PF00005 ABC transporter CLSA_c33270 PF00005 ABC transporter CLSA_c33270 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLSA_c33290 PF02653 Branched-chain amino acid transport system / permease component CLSA_c33300 PF13458 Periplasmic binding protein CLSA_c33370 PF04239 Protein of unknown function (DUF421) CLSA_c33450 PF07883 Cupin domain CLSA_c33450 PF01381 Helix-turn-helix CLSA_c33460 PF13536 Putative multidrug resistance efflux transporter CLSA_c33480 PF00005 ABC transporter CLSA_c33490 PF01544 CorA-like Mg2+ transporter protein CLSA_c33530 PF00854 POT family CLSA_c33550 PF02096 60Kd inner membrane protein CLSA_c33560 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CLSA_c33590 PF02525 Flavodoxin-like fold CLSA_c33610 PF06314 Acetoacetate decarboxylase (ADC) CLSA_c33620 PF01144 Coenzyme A transferase CLSA_c33630 PF01144 Coenzyme A transferase CLSA_c33640 PF00171 Aldehyde dehydrogenase family CLSA_c33680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c33680 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c33680 PF00672 HAMP domain CLSA_c33690 PF00072 Response regulator receiver domain CLSA_c33690 PF00486 Transcriptional regulatory protein, C terminal CLSA_c33700 PF05525 Branched-chain amino acid transport protein CLSA_c33760 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c33780 PF01966 HD domain CLSA_c33780 PF00072 Response regulator receiver domain CLSA_c33800 PF13419 Haloacid dehalogenase-like hydrolase CLSA_c33810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLSA_c33810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLSA_c33820 PF00302 Chloramphenicol acetyltransferase CLSA_c33860 PF00005 ABC transporter CLSA_c33870 PF00392 Bacterial regulatory proteins, gntR family CLSA_c33920 PF00690 Cation transporter/ATPase, N-terminus CLSA_c33920 PF00689 Cation transporting ATPase, C-terminus CLSA_c33930 PF04286 Protein of unknown function (DUF445) CLSA_c33970 PF00403 Heavy-metal-associated domain CLSA_c33980 PF00872 Transposase, Mutator family CLSA_c34020 PF17202 Single cache domain 3 CLSA_c34020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c34020 PF00672 HAMP domain CLSA_c34090 PF12729 Four helix bundle sensory module for signal transduction CLSA_c34090 PF00672 HAMP domain CLSA_c34090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c34100 PF00440 Bacterial regulatory proteins, tetR family CLSA_c34110 PF07690 Major Facilitator Superfamily CLSA_c34120 PF00857 Isochorismatase family CLSA_c34160 PF00440 Bacterial regulatory proteins, tetR family CLSA_c34160 PF17932 Tetracyclin repressor-like, C-terminal domain CLSA_c34180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLSA_c34180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLSA_c34200 PF07859 alpha/beta hydrolase fold CLSA_c34210 PF09997 Predicted membrane protein (DUF2238) CLSA_c34390 PF00583 Acetyltransferase (GNAT) family CLSA_c34420 PF07690 Major Facilitator Superfamily CLSA_c34450 PF13411 MerR HTH family regulatory protein CLSA_c34460 PF02567 Phenazine biosynthesis-like protein CLSA_c34470 PF00300 Histidine phosphatase superfamily (branch 1) CLSA_c34520 PF13649 Methyltransferase domain CLSA_c34590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLSA_c34610 PF00753 Metallo-beta-lactamase superfamily CLSA_c34690 PF14883 Hypothetical glycosyl hydrolase family 13 CLSA_c34690 PF01522 Polysaccharide deacetylase CLSA_c34730 PF13407 Periplasmic binding protein domain CLSA_c34750 PF12706 Beta-lactamase superfamily domain CLSA_c34780 PF03949 Malic enzyme, NAD binding domain CLSA_c34780 PF00390 Malic enzyme, N-terminal domain CLSA_c34790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c34790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLSA_c34800 PF01293 Phosphoenolpyruvate carboxykinase CLSA_c34810 PF02080 TrkA-C domain CLSA_c34810 PF06826 Predicted Permease Membrane Region CLSA_c34820 PF04303 PrpF protein CLSA_c34830 PF00330 Aconitase family (aconitate hydratase) CLSA_c34850 PF04223 Citrate lyase, alpha subunit (CitF) CLSA_c34860 PF03328 HpcH/HpaI aldolase/citrate lyase family CLSA_c34870 PF06857 Malonate decarboxylase delta subunit (MdcD) CLSA_c34880 PF08218 Citrate lyase ligase C-terminal domain CLSA_c34890 PF00392 Bacterial regulatory proteins, gntR family CLSA_c34890 PF07729 FCD domain CLSA_c34900 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CLSA_c34910 PF00324 Amino acid permease CLSA_c34980 PF07883 Cupin domain CLSA_c34990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c35020 PF01554 MatE CLSA_c35080 PF17202 Single cache domain 3 CLSA_c35080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c35080 PF00672 HAMP domain CLSA_c35140 PF00665 Integrase core domain CLSA_c35140 PF13276 HTH-like domain CLSA_c35140 PF13333 Integrase core domain CLSA_c35200 PF05076 Suppressor of fused protein (SUFU) CLSA_c35210 PF04740 LXG domain of WXG superfamily CLSA_c35210 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues CLSA_c35210 PF14449 Pre-toxin TG CLSA_c35310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c35310 PF00672 HAMP domain CLSA_c35310 PF05227 CHASE3 domain CLSA_c35320 PF00440 Bacterial regulatory proteins, tetR family CLSA_c35320 PF13977 BetI-type transcriptional repressor, C-terminal CLSA_c35330 PF17200 Single Cache domain 2 CLSA_c35330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c35330 PF00672 HAMP domain CLSA_c35410 PF04865 Baseplate J-like protein CLSA_c35620 PF10668 Phage terminase small subunit CLSA_c35620 PF03592 Terminase small subunit CLSA_c35690 PF01695 IstB-like ATP binding protein CLSA_c35760 PF13276 HTH-like domain CLSA_c35760 PF00665 Integrase core domain CLSA_c35760 PF13333 Integrase core domain CLSA_c35780 PF13732 Domain of unknown function (DUF4162) CLSA_c35780 PF00005 ABC transporter CLSA_c35810 PF02743 Cache domain CLSA_c35810 PF00672 HAMP domain CLSA_c35810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c35840 PF12833 Helix-turn-helix domain CLSA_c35860 PF07739 TipAS antibiotic-recognition domain CLSA_c35860 PF13411 MerR HTH family regulatory protein CLSA_c35870 PF10026 Predicted Zn-dependent protease (DUF2268) CLSA_c35880 PF13411 MerR HTH family regulatory protein CLSA_c35890 PF00561 alpha/beta hydrolase fold CLSA_c35890 PF00106 short chain dehydrogenase CLSA_c35910 PF00544 Pectate lyase CLSA_c35920 PF00857 Isochorismatase family CLSA_c35930 PF01037 Lrp/AsnC ligand binding domain CLSA_c35940 PF03466 LysR substrate binding domain CLSA_c35940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c35950 PF01161 Phosphatidylethanolamine-binding protein CLSA_c35960 PF01808 AICARFT/IMPCHase bienzyme CLSA_c35960 PF02142 MGS-like domain CLSA_c35970 PF00893 Small Multidrug Resistance protein CLSA_c35980 PF17314 Family of unknown function (DUF5360) CLSA_c36050 PF00486 Transcriptional regulatory protein, C terminal CLSA_c36050 PF00072 Response regulator receiver domain CLSA_c36060 PF00672 HAMP domain CLSA_c36060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c36060 PF18698 Histidine kinase sensor domain CLSA_c36060 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c36060 PF00989 PAS fold CLSA_c36070 PF00753 Metallo-beta-lactamase superfamily CLSA_c36110 PF00232 Glycosyl hydrolase family 1 CLSA_c36130 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CLSA_c36130 PF12833 Helix-turn-helix domain CLSA_c36140 PF00465 Iron-containing alcohol dehydrogenase CLSA_c36170 PF01613 Flavin reductase like domain CLSA_c36190 PF01243 Pyridoxamine 5'-phosphate oxidase CLSA_c36210 PF01638 HxlR-like helix-turn-helix CLSA_c36270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c36270 PF03466 LysR substrate binding domain CLSA_c36280 PF03601 Conserved hypothetical protein 698 CLSA_c36300 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c36300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c36300 PF18719 ArlS sensor domain CLSA_c36310 PF00072 Response regulator receiver domain CLSA_c36310 PF00486 Transcriptional regulatory protein, C terminal CLSA_c36320 PF00535 Glycosyl transferase family 2 CLSA_c36360 PF05192 MutS domain III CLSA_c36360 PF00488 MutS domain V CLSA_c36360 PF05188 MutS domain II CLSA_c36360 PF01624 MutS domain I CLSA_c36360 PF05190 MutS family domain IV CLSA_c36380 PF01965 DJ-1/PfpI family CLSA_c36390 PF00072 Response regulator receiver domain CLSA_c36390 PF12833 Helix-turn-helix domain CLSA_c36440 PF02653 Branched-chain amino acid transport system / permease component CLSA_c36450 PF00005 ABC transporter CLSA_c36500 PF04740 LXG domain of WXG superfamily CLSA_c36500 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH CLSA_c36540 PF01548 Transposase CLSA_c36540 PF02371 Transposase IS116/IS110/IS902 family CLSA_c36560 PF04740 LXG domain of WXG superfamily CLSA_c36560 PF14436 Bacterial EndoU nuclease CLSA_c36570 PF00665 Integrase core domain CLSA_c36730 PF00005 ABC transporter CLSA_c36750 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLSA_c36750 PF00933 Glycosyl hydrolase family 3 N terminal domain CLSA_c36750 PF14310 Fibronectin type III-like domain CLSA_c36750 PF07691 PA14 domain CLSA_c36760 PF12833 Helix-turn-helix domain CLSA_c36760 PF02311 AraC-like ligand binding domain CLSA_c36770 PF00672 HAMP domain CLSA_c36770 PF12729 Four helix bundle sensory module for signal transduction CLSA_c36770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c36780 PF00072 Response regulator receiver domain CLSA_c36780 PF12833 Helix-turn-helix domain CLSA_c36790 PF00360 Phytochrome region CLSA_c36790 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c36790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c36790 PF08446 PAS fold CLSA_c36790 PF01590 GAF domain CLSA_c36810 PF00989 PAS fold CLSA_c36810 PF00672 HAMP domain CLSA_c36810 PF18698 Histidine kinase sensor domain CLSA_c36810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c36810 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c36820 PF13407 Periplasmic binding protein domain CLSA_c36830 PF13407 Periplasmic binding protein domain CLSA_c36870 PF01522 Polysaccharide deacetylase CLSA_c36880 PF00005 ABC transporter CLSA_c36880 PF00664 ABC transporter transmembrane region CLSA_c36890 PF00005 ABC transporter CLSA_c36890 PF00664 ABC transporter transmembrane region CLSA_c36900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c36900 PF03466 LysR substrate binding domain CLSA_c36910 PF13443 Cro/C1-type HTH DNA-binding domain CLSA_c36940 PF04073 Aminoacyl-tRNA editing domain CLSA_c36960 PF01638 HxlR-like helix-turn-helix CLSA_c36990 PF00005 ABC transporter CLSA_c37010 PF02627 Carboxymuconolactone decarboxylase family CLSA_c37020 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c37020 PF00563 EAL domain CLSA_c37020 PF03707 Bacterial signalling protein N terminal repeat CLSA_c37060 PF00664 ABC transporter transmembrane region CLSA_c37060 PF00005 ABC transporter CLSA_c37070 PF00082 Subtilase family CLSA_c37100 PF06463 Molybdenum Cofactor Synthesis C CLSA_c37100 PF04055 Radical SAM superfamily CLSA_c37160 PF00873 AcrB/AcrD/AcrF family CLSA_c37220 PF00188 Cysteine-rich secretory protein family CLSA_c37240 PF13407 Periplasmic binding protein domain CLSA_c37270 PF08281 Sigma-70, region 4 CLSA_c37270 PF04542 Sigma-70 region 2 CLSA_c37300 PF00672 HAMP domain CLSA_c37300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c37300 PF02743 Cache domain CLSA_c37370 PF13407 Periplasmic binding protein domain CLSA_c37410 PF09297 NADH pyrophosphatase zinc ribbon domain CLSA_c37410 PF00293 NUDIX domain CLSA_c37420 PF00672 HAMP domain CLSA_c37420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c37420 PF12729 Four helix bundle sensory module for signal transduction CLSA_c37440 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c37440 PF08448 PAS fold CLSA_c37440 PF13426 PAS domain CLSA_c37440 PF00072 Response regulator receiver domain CLSA_c37440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c37450 PF00704 Glycosyl hydrolases family 18 CLSA_c37450 PF00041 Fibronectin type III domain CLSA_c37490 PF03449 Transcription elongation factor, N-terminal CLSA_c37490 PF01272 Transcription elongation factor, GreA/GreB, C-term CLSA_c37500 PF01047 MarR family CLSA_c37510 PF07690 Major Facilitator Superfamily CLSA_c37530 PF07690 Major Facilitator Superfamily CLSA_c37540 PF00873 AcrB/AcrD/AcrF family CLSA_c37550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLSA_c37560 PF00486 Transcriptional regulatory protein, C terminal CLSA_c37560 PF00072 Response regulator receiver domain CLSA_c37570 PF00989 PAS fold CLSA_c37570 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c37570 PF16736 Single Cache-like CLSA_c37570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c37610 PF00905 Penicillin binding protein transpeptidase domain CLSA_c37610 PF05569 BlaR1 peptidase M56 CLSA_c37620 PF03965 Penicillinase repressor CLSA_c37630 PF00753 Metallo-beta-lactamase superfamily CLSA_c37640 PF00975 Thioesterase domain CLSA_c37640 PF00501 AMP-binding enzyme CLSA_c37640 PF13193 AMP-binding enzyme C-terminal domain CLSA_c37640 PF00668 Condensation domain CLSA_c37640 PF00550 Phosphopantetheine attachment site CLSA_c37650 PF00501 AMP-binding enzyme CLSA_c37650 PF00668 Condensation domain CLSA_c37650 PF00550 Phosphopantetheine attachment site CLSA_c37650 PF18563 TubC N-terminal docking domain CLSA_c37650 PF13193 AMP-binding enzyme C-terminal domain CLSA_c37670 PF11490 DNA polymerase III polC-type N-terminus II CLSA_c37670 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLSA_c37670 PF14579 Helix-hairpin-helix motif CLSA_c37670 PF02811 PHP domain CLSA_c37670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLSA_c37670 PF01336 OB-fold nucleic acid binding domain CLSA_c37670 PF00929 Exonuclease CLSA_c37680 PF01047 MarR family CLSA_c37690 PF13847 Methyltransferase domain CLSA_c37740 PF08951 Enterocin A Immunity CLSA_c37750 PF01721 Class II bacteriocin CLSA_c37770 PF00255 Glutathione peroxidase CLSA_c37780 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c37790 PF13520 Amino acid permease CLSA_c37820 PF01741 Large-conductance mechanosensitive channel, MscL CLSA_c37840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c37840 PF00672 HAMP domain CLSA_c37840 PF02743 Cache domain CLSA_c37860 PF13545 Crp-like helix-turn-helix domain CLSA_c37860 PF00027 Cyclic nucleotide-binding domain CLSA_c37870 PF00171 Aldehyde dehydrogenase family CLSA_c37880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLSA_c37880 PF03466 LysR substrate binding domain CLSA_c37910 PF04405 Domain of Unknown function (DUF542) CLSA_c37910 PF01814 Hemerythrin HHE cation binding domain CLSA_c37920 PF00258 Flavodoxin CLSA_c37930 PF00171 Aldehyde dehydrogenase family CLSA_c37940 PF00970 Oxidoreductase FAD-binding domain CLSA_c37940 PF00175 Oxidoreductase NAD-binding domain CLSA_c37940 PF00042 Globin CLSA_c37960 PF00753 Metallo-beta-lactamase superfamily CLSA_c37960 PF00258 Flavodoxin CLSA_c37960 PF00301 Rubredoxin CLSA_c37970 PF00027 Cyclic nucleotide-binding domain CLSA_c37970 PF13545 Crp-like helix-turn-helix domain CLSA_c38000 PF03063 Prismane/CO dehydrogenase family CLSA_c38020 PF13426 PAS domain CLSA_c38020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c38020 PF08447 PAS fold CLSA_c38040 PF03738 Glutathionylspermidine synthase preATP-grasp CLSA_c38090 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c38130 PF01674 Lipase (class 2) CLSA_c38150 PF08274 PhnA Zinc-Ribbon CLSA_c38150 PF03831 PhnA domain CLSA_c38160 PF01522 Polysaccharide deacetylase CLSA_c38160 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CLSA_c38170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c38170 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c38170 PF00989 PAS fold CLSA_c38170 PF00672 HAMP domain CLSA_c38170 PF18698 Histidine kinase sensor domain CLSA_c38190 PF00535 Glycosyl transferase family 2 CLSA_c38200 PF00970 Oxidoreductase FAD-binding domain CLSA_c38200 PF00175 Oxidoreductase NAD-binding domain CLSA_c38200 PF00111 2Fe-2S iron-sulfur cluster binding domain CLSA_c38210 PF01066 CDP-alcohol phosphatidyltransferase CLSA_c38220 PF03741 Integral membrane protein TerC family CLSA_c38230 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CLSA_c38240 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CLSA_c38260 PF06277 Ethanolamine utilisation protein EutA CLSA_c38280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c38280 PF00672 HAMP domain CLSA_c38280 PF02743 Cache domain CLSA_c38310 PF00474 Sodium:solute symporter family CLSA_c38330 PF13396 Phospholipase_D-nuclease N-terminal CLSA_c38330 PF13091 PLD-like domain CLSA_c38340 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLSA_c38340 PF02742 Iron dependent repressor, metal binding and dimerisation domain CLSA_c38350 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLSA_c38360 PF02779 Transketolase, pyrimidine binding domain CLSA_c38360 PF02780 Transketolase, C-terminal domain CLSA_c38370 PF00456 Transketolase, thiamine diphosphate binding domain CLSA_c38380 PF01261 Xylose isomerase-like TIM barrel CLSA_c38390 PF00596 Class II Aldolase and Adducin N-terminal domain CLSA_c38410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLSA_c38420 PF03611 PTS system sugar-specific permease component CLSA_c38460 PF08220 DeoR-like helix-turn-helix domain CLSA_c38460 PF00455 DeoR C terminal sensor domain CLSA_c38470 PF17770 Ribonuclease J C-terminal domain CLSA_c38470 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLSA_c38470 PF00753 Metallo-beta-lactamase superfamily CLSA_c38480 PF06397 Desulfoferrodoxin, N-terminal domain CLSA_c38480 PF01880 Desulfoferrodoxin CLSA_c38500 PF00155 Aminotransferase class I and II CLSA_c38510 PF00842 Alanine racemase, C-terminal domain CLSA_c38510 PF01168 Alanine racemase, N-terminal domain CLSA_c38520 PF02645 Uncharacterised protein, DegV family COG1307 CLSA_c38530 PF10672 S-adenosylmethionine-dependent methyltransferase CLSA_c38530 PF17785 PUA-like domain CLSA_c38550 PF17999 Pullulanase N1-terminal domain CLSA_c38550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLSA_c38550 PF00128 Alpha amylase, catalytic domain CLSA_c38560 PF02903 Alpha amylase, N-terminal ig-like domain CLSA_c38560 PF16657 Maltogenic Amylase, C-terminal domain CLSA_c38560 PF00128 Alpha amylase, catalytic domain CLSA_c38570 PF06207 Protein of unknown function (DUF1002) CLSA_c38610 PF12146 Serine aminopeptidase, S33 CLSA_c38630 PF00072 Response regulator receiver domain CLSA_c38660 PF01048 Phosphorylase superfamily CLSA_c38670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLSA_c38710 PF02608 ABC transporter substrate-binding protein PnrA-like CLSA_c38720 PF00356 Bacterial regulatory proteins, lacI family CLSA_c38730 PF00155 Aminotransferase class I and II CLSA_c38740 PF01037 Lrp/AsnC ligand binding domain CLSA_c38760 PF02861 Clp amino terminal domain, pathogenicity island component CLSA_c38760 PF10431 C-terminal, D2-small domain, of ClpB protein CLSA_c38760 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c38760 PF07724 AAA domain (Cdc48 subfamily) CLSA_c38760 PF17871 AAA lid domain CLSA_c38770 PF02617 ATP-dependent Clp protease adaptor protein ClpS CLSA_c38780 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLSA_c38780 PF01276 Orn/Lys/Arg decarboxylase, major domain CLSA_c38790 PF01212 Beta-eliminating lyase CLSA_c38800 PF05193 Peptidase M16 inactive domain CLSA_c38840 PF00183 Hsp90 protein CLSA_c38850 PF01966 HD domain CLSA_c38870 PF00005 ABC transporter CLSA_c38890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c38900 PF00072 Response regulator receiver domain CLSA_c38900 PF00486 Transcriptional regulatory protein, C terminal CLSA_c38910 PF02743 Cache domain CLSA_c38910 PF00672 HAMP domain CLSA_c38910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c38920 PF00009 Elongation factor Tu GTP binding domain CLSA_c38930 PF01507 Phosphoadenosine phosphosulfate reductase family CLSA_c38960 PF00005 ABC transporter CLSA_c38960 PF08402 TOBE domain CLSA_c38970 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c38980 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c39010 PF07664 Ferrous iron transport protein B C terminus CLSA_c39010 PF07670 Nucleoside recognition CLSA_c39010 PF02421 Ferrous iron transport protein B CLSA_c39010 PF17910 FeoB cytosolic helical domain CLSA_c39040 PF01522 Polysaccharide deacetylase CLSA_c39040 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CLSA_c39050 PF00579 tRNA synthetases class I (W and Y) CLSA_c39080 PF11799 impB/mucB/samB family C-terminal domain CLSA_c39080 PF11798 IMS family HHH motif CLSA_c39080 PF00817 impB/mucB/samB family CLSA_c39110 PF00689 Cation transporting ATPase, C-terminus CLSA_c39110 PF00690 Cation transporter/ATPase, N-terminus CLSA_c39120 PF02833 DHHA2 domain CLSA_c39120 PF07085 DRTGG domain CLSA_c39120 PF01368 DHH family CLSA_c39120 PF00571 CBS domain CLSA_c39130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLSA_c39130 PF00460 Flagella basal body rod protein CLSA_c39140 PF07196 Flagellin hook IN motif CLSA_c39140 PF00460 Flagella basal body rod protein CLSA_c39170 PF04542 Sigma-70 region 2 CLSA_c39170 PF04539 Sigma-70 region 3 CLSA_c39170 PF04545 Sigma-70, region 4 CLSA_c39190 PF10609 NUBPL iron-transfer P-loop NTPase CLSA_c39200 PF00448 SRP54-type protein, GTPase domain CLSA_c39210 PF00771 FHIPEP family CLSA_c39220 PF01312 FlhB HrpN YscU SpaS Family CLSA_c39230 PF01313 Bacterial export proteins, family 3 CLSA_c39240 PF00813 FliP family CLSA_c39270 PF06289 Flagellar and Swarming motility proteins CLSA_c39280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLSA_c39280 PF00460 Flagella basal body rod protein CLSA_c39320 PF02050 Flagellar FliJ protein CLSA_c39330 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLSA_c39330 PF18269 T3SS EscN ATPase C-terminal domain CLSA_c39330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLSA_c39350 PF01706 FliG C-terminal domain CLSA_c39350 PF14842 FliG N-terminal domain CLSA_c39350 PF14841 FliG middle domain CLSA_c39360 PF01514 Secretory protein of YscJ/FliF family CLSA_c39360 PF08345 Flagellar M-ring protein C-terminal CLSA_c39370 PF02049 Flagellar hook-basal body complex protein FliE CLSA_c39380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLSA_c39380 PF00460 Flagella basal body rod protein CLSA_c39390 PF00460 Flagella basal body rod protein CLSA_c39450 PF00700 Bacterial flagellin C-terminal helical region CLSA_c39450 PF00669 Bacterial flagellin N-terminal helical region CLSA_c39460 PF16363 GDP-mannose 4,6 dehydratase CLSA_c39480 PF02719 Polysaccharide biosynthesis protein CLSA_c39490 PF13181 Tetratricopeptide repeat CLSA_c39490 PF00535 Glycosyl transferase family 2 CLSA_c39500 PF03102 NeuB family CLSA_c39500 PF08666 SAF domain CLSA_c39520 PF02348 Cytidylyltransferase CLSA_c39540 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CLSA_c39540 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c39550 PF00117 Glutamine amidotransferase class-I CLSA_c39570 PF00977 Histidine biosynthesis protein CLSA_c39580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLSA_c39600 PF02348 Cytidylyltransferase CLSA_c39630 PF00700 Bacterial flagellin C-terminal helical region CLSA_c39630 PF00669 Bacterial flagellin N-terminal helical region CLSA_c39650 PF07195 Flagellar hook-associated protein 2 C-terminus CLSA_c39650 PF02465 Flagellar hook-associated protein 2 N-terminus CLSA_c39650 PF07196 Flagellin hook IN motif CLSA_c39680 PF03646 FlaG protein CLSA_c39690 PF02599 Global regulator protein family CLSA_c39700 PF02623 FliW protein CLSA_c39720 PF00460 Flagella basal body rod protein CLSA_c39720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLSA_c39750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLSA_c39750 PF04509 CheC-like family CLSA_c39760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLSA_c39760 PF02154 Flagellar motor switch protein FliM CLSA_c39770 PF01584 CheW-like domain CLSA_c39780 PF00072 Response regulator receiver domain CLSA_c39790 PF04509 CheC-like family CLSA_c39800 PF01584 CheW-like domain CLSA_c39800 PF02895 Signal transducing histidine kinase, homodimeric domain CLSA_c39800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c39800 PF07194 P2 response regulator binding domain CLSA_c39800 PF01627 Hpt domain CLSA_c39810 PF01739 CheR methyltransferase, SAM binding domain CLSA_c39810 PF03705 CheR methyltransferase, all-alpha domain CLSA_c39820 PF00072 Response regulator receiver domain CLSA_c39820 PF01339 CheB methylesterase CLSA_c39830 PF03975 CheD chemotactic sensory transduction CLSA_c39840 PF01584 CheW-like domain CLSA_c39860 PF01063 Amino-transferase class IV CLSA_c39880 PF00155 Aminotransferase class I and II CLSA_c39900 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLSA_c39900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLSA_c39900 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLSA_c39900 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLSA_c39900 PF10371 Domain of unknown function CLSA_c39910 PF03358 NADPH-dependent FMN reductase CLSA_c39920 PF03033 Glycosyltransferase family 28 N-terminal domain CLSA_c39920 PF04101 Glycosyltransferase family 28 C-terminal domain CLSA_c39930 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLSA_c39930 PF17768 RecJ OB domain CLSA_c39930 PF02272 DHHA1 domain CLSA_c39930 PF01368 DHH family CLSA_c39940 PF01965 DJ-1/PfpI family CLSA_c39950 PF03989 DNA gyrase C-terminal domain, beta-propeller CLSA_c39950 PF00521 DNA gyrase/topoisomerase IV, subunit A CLSA_c39960 PF01751 Toprim domain CLSA_c39960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c39960 PF00986 DNA gyrase B subunit, carboxyl terminus CLSA_c39960 PF00204 DNA gyrase B CLSA_c39990 PF01694 Rhomboid family CLSA_c40000 PF01432 Peptidase family M3 CLSA_c40000 PF08439 Oligopeptidase F CLSA_c40030 PF00005 ABC transporter CLSA_c40040 PF00950 ABC 3 transport family CLSA_c40050 PF01475 Ferric uptake regulator family CLSA_c40060 PF02659 Putative manganese efflux pump CLSA_c40070 PF00365 Phosphofructokinase CLSA_c40080 PF00266 Aminotransferase class-V CLSA_c40100 PF00440 Bacterial regulatory proteins, tetR family CLSA_c40100 PF17934 Tetracyclin repressor-like, C-terminal domain CLSA_c40110 PF12848 ABC transporter CLSA_c40110 PF00005 ABC transporter CLSA_c40110 PF16326 ABC transporter C-terminal domain CLSA_c40120 PF00692 dUTPase CLSA_c40140 PF01522 Polysaccharide deacetylase CLSA_c40140 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CLSA_c40150 PF17099 Tryptophan transporter TrpP CLSA_c40160 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c40160 PF03707 Bacterial signalling protein N terminal repeat CLSA_c40160 PF00563 EAL domain CLSA_c40180 PF01171 PP-loop family CLSA_c40200 PF03576 Peptidase family S58 CLSA_c40210 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLSA_c40220 PF10431 C-terminal, D2-small domain, of ClpB protein CLSA_c40220 PF07724 AAA domain (Cdc48 subfamily) CLSA_c40220 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c40220 PF17871 AAA lid domain CLSA_c40220 PF02861 Clp amino terminal domain, pathogenicity island component CLSA_c40280 PF13247 4Fe-4S dicluster domain CLSA_c40280 PF12800 4Fe-4S binding domain CLSA_c40290 PF01568 Molydopterin dinucleotide binding domain CLSA_c40290 PF00384 Molybdopterin oxidoreductase CLSA_c40290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLSA_c40310 PF03180 NLPA lipoprotein CLSA_c40320 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c40330 PF00005 ABC transporter CLSA_c40330 PF09383 NIL domain CLSA_c40340 PF01668 SmpB protein CLSA_c40350 PF08206 Ribonuclease B OB domain CLSA_c40350 PF00575 S1 RNA binding domain CLSA_c40350 PF00773 RNB domain CLSA_c40350 PF17876 Cold shock domain CLSA_c40370 PF03952 Enolase, N-terminal domain CLSA_c40370 PF00113 Enolase, C-terminal TIM barrel domain CLSA_c40400 PF01676 Metalloenzyme superfamily CLSA_c40400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLSA_c40410 PF00121 Triosephosphate isomerase CLSA_c40420 PF00162 Phosphoglycerate kinase CLSA_c40430 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLSA_c40430 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLSA_c40440 PF04198 Putative sugar-binding domain CLSA_c40450 PF04552 Sigma-54, DNA binding domain CLSA_c40450 PF04963 Sigma-54 factor, core binding domain CLSA_c40450 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLSA_c40460 PF02645 Uncharacterised protein, DegV family COG1307 CLSA_c40470 PF00588 SpoU rRNA Methylase family CLSA_c40480 PF04294 VanW like protein CLSA_c40500 PF07478 D-ala D-ala ligase C-terminus CLSA_c40500 PF01820 D-ala D-ala ligase N-terminus CLSA_c40520 PF00633 Helix-hairpin-helix motif CLSA_c40520 PF00730 HhH-GPD superfamily base excision DNA repair protein CLSA_c40540 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c40550 PF00291 Pyridoxal-phosphate dependent enzyme CLSA_c40560 PF03448 MgtE intracellular N domain CLSA_c40560 PF01769 Divalent cation transporter CLSA_c40560 PF00571 CBS domain CLSA_c40570 PF11842 Domain of unknown function (DUF3362) CLSA_c40570 PF04055 Radical SAM superfamily CLSA_c40570 PF08497 Radical SAM N-terminal CLSA_c40600 PF00781 Diacylglycerol kinase catalytic domain CLSA_c40610 PF01066 CDP-alcohol phosphatidyltransferase CLSA_c40640 PF02915 Rubrerythrin CLSA_c40650 PF04293 SpoVR like protein CLSA_c40660 PF04285 Protein of unknown function (DUF444) CLSA_c40670 PF08298 PrkA AAA domain CLSA_c40670 PF06798 PrkA serine protein kinase C-terminal domain CLSA_c40680 PF07690 Major Facilitator Superfamily CLSA_c40700 PF00072 Response regulator receiver domain CLSA_c40710 PF03649 Uncharacterised protein family (UPF0014) CLSA_c40720 PF00664 ABC transporter transmembrane region CLSA_c40720 PF00005 ABC transporter CLSA_c40720 PF03412 Peptidase C39 family CLSA_c40730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLSA_c40740 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLSA_c40740 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLSA_c40740 PF13247 4Fe-4S dicluster domain CLSA_c40750 PF00175 Oxidoreductase NAD-binding domain CLSA_c40750 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLSA_c40760 PF08240 Alcohol dehydrogenase GroES-like domain CLSA_c40760 PF00107 Zinc-binding dehydrogenase CLSA_c40770 PF02954 Bacterial regulatory protein, Fis family CLSA_c40770 PF00158 Sigma-54 interaction domain CLSA_c40770 PF13426 PAS domain CLSA_c40810 PF00005 ABC transporter CLSA_c40820 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c40820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c40830 PF00072 Response regulator receiver domain CLSA_c40830 PF00486 Transcriptional regulatory protein, C terminal CLSA_c40850 PF00563 EAL domain CLSA_c40850 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c40850 PF13426 PAS domain CLSA_c40860 PF00589 Phage integrase family CLSA_c40880 PF01047 MarR family CLSA_c40890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLSA_c40890 PF02770 Acyl-CoA dehydrogenase, middle domain CLSA_c40890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLSA_c40900 PF01144 Coenzyme A transferase CLSA_c40910 PF00378 Enoyl-CoA hydratase/isomerase CLSA_c40920 PF00133 tRNA synthetases class I (I, L, M and V) CLSA_c40920 PF13603 Leucyl-tRNA synthetase, Domain 2 CLSA_c40920 PF09334 tRNA synthetases class I (M) CLSA_c40920 PF08264 Anticodon-binding domain of tRNA CLSA_c40940 PF04397 LytTr DNA-binding domain CLSA_c40940 PF00072 Response regulator receiver domain CLSA_c40950 PF07689 KaiB domain CLSA_c40950 PF00512 His Kinase A (phospho-acceptor) domain CLSA_c40950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c41010 PF04607 Region found in RelA / SpoT proteins CLSA_c41030 PF00672 HAMP domain CLSA_c41030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c41050 PF07745 Glycosyl hydrolase family 53 CLSA_c41060 PF00294 pfkB family carbohydrate kinase CLSA_c41070 PF01116 Fructose-bisphosphate aldolase class-II CLSA_c41080 PF00232 Glycosyl hydrolase family 1 CLSA_c41090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLSA_c41090 PF02378 Phosphotransferase system, EIIC CLSA_c41100 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLSA_c41110 PF02502 Ribose/Galactose Isomerase CLSA_c41120 PF02502 Ribose/Galactose Isomerase CLSA_c41130 PF00455 DeoR C terminal sensor domain CLSA_c41130 PF08220 DeoR-like helix-turn-helix domain CLSA_c41150 PF01312 FlhB HrpN YscU SpaS Family CLSA_c41170 PF01479 S4 domain CLSA_c41170 PF00579 tRNA synthetases class I (W and Y) CLSA_c41200 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c41220 PF13477 Glycosyl transferase 4-like CLSA_c41220 PF00534 Glycosyl transferases group 1 CLSA_c41230 PF00483 Nucleotidyl transferase CLSA_c41240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLSA_c41240 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLSA_c41250 PF02397 Bacterial sugar transferase CLSA_c41270 PF02350 UDP-N-acetylglucosamine 2-epimerase CLSA_c41290 PF02719 Polysaccharide biosynthesis protein CLSA_c41300 PF01501 Glycosyl transferase family 8 CLSA_c41300 PF00535 Glycosyl transferase family 2 CLSA_c41310 PF04991 LicD family CLSA_c41320 PF01501 Glycosyl transferase family 8 CLSA_c41320 PF00535 Glycosyl transferase family 2 CLSA_c41330 PF08239 Bacterial SH3 domain CLSA_c41330 PF01520 N-acetylmuramoyl-L-alanine amidase CLSA_c41370 PF01418 Helix-turn-helix domain, rpiR family CLSA_c41370 PF01380 SIS domain CLSA_c41390 PF04193 PQ loop repeat CLSA_c41400 PF00232 Glycosyl hydrolase family 1 CLSA_c41420 PF07694 5TMR of 5TMR-LYT CLSA_c41420 PF00990 Diguanylate cyclase, GGDEF domain CLSA_c41430 PF00892 EamA-like transporter family CLSA_c41450 PF00892 EamA-like transporter family CLSA_c41480 PF12804 MobA-like NTP transferase domain CLSA_c41520 PF08239 Bacterial SH3 domain CLSA_c41520 PF01520 N-acetylmuramoyl-L-alanine amidase CLSA_c41530 PF01520 N-acetylmuramoyl-L-alanine amidase CLSA_c41530 PF05036 Sporulation related domain CLSA_c41540 PF01380 SIS domain CLSA_c41540 PF01418 Helix-turn-helix domain, rpiR family CLSA_c41550 PF01380 SIS domain CLSA_c41550 PF01418 Helix-turn-helix domain, rpiR family CLSA_c41560 PF16760 Starch/carbohydrate-binding module (family 53) CLSA_c41560 PF00128 Alpha amylase, catalytic domain CLSA_c41580 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLSA_c41580 PF02056 Family 4 glycosyl hydrolase CLSA_c41610 PF02378 Phosphotransferase system, EIIC CLSA_c41610 PF00367 phosphotransferase system, EIIB CLSA_c41620 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLSA_c41640 PF00535 Glycosyl transferase family 2 CLSA_c41640 PF13181 Tetratricopeptide repeat CLSA_c41650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLSA_c41650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLSA_c41650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLSA_c41660 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c41660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CLSA_c41680 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLSA_c41690 PF16363 GDP-mannose 4,6 dehydratase CLSA_c41740 PF00009 Elongation factor Tu GTP binding domain CLSA_c41740 PF16658 Class II release factor RF3, C-terminal domain CLSA_c41740 PF03144 Elongation factor Tu domain 2 CLSA_c41800 PF02027 RolB/RolC glucosidase family CLSA_c41800 PF01593 Flavin containing amine oxidoreductase CLSA_c41810 PF00266 Aminotransferase class-V CLSA_c41840 PF03009 Glycerophosphoryl diester phosphodiesterase family CLSA_c41990 PF00535 Glycosyl transferase family 2 CLSA_c42010 PF00535 Glycosyl transferase family 2 CLSA_c42010 PF01501 Glycosyl transferase family 8 CLSA_c42030 PF00005 ABC transporter CLSA_c42040 PF01061 ABC-2 type transporter CLSA_c42060 PF00535 Glycosyl transferase family 2 CLSA_c42070 PF02397 Bacterial sugar transferase CLSA_c42080 PF00534 Glycosyl transferases group 1 CLSA_c42080 PF13439 Glycosyltransferase Family 4 CLSA_c42150 PF00005 ABC transporter CLSA_c42150 PF12704 MacB-like periplasmic core domain CLSA_c42150 PF02687 FtsX-like permease family CLSA_c42220 PF00483 Nucleotidyl transferase CLSA_c42240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLSA_c42240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLSA_c42240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLSA_c42240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLSA_c42250 PF16363 GDP-mannose 4,6 dehydratase CLSA_c42260 PF04321 RmlD substrate binding domain CLSA_c42270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLSA_c42280 PF00483 Nucleotidyl transferase CLSA_c42320 PF00534 Glycosyl transferases group 1 CLSA_c42330 PF00535 Glycosyl transferase family 2 CLSA_c42350 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLSA_c42360 PF01050 Mannose-6-phosphate isomerase CLSA_c42360 PF00483 Nucleotidyl transferase CLSA_c42370 PF02397 Bacterial sugar transferase CLSA_c42410 PF13614 AAA domain CLSA_c42420 PF02706 Chain length determinant protein CLSA_c42420 PF13807 G-rich domain on putative tyrosine kinase CLSA_c42480 PF12729 Four helix bundle sensory module for signal transduction CLSA_c42480 PF00672 HAMP domain CLSA_c42480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c42500 PF12706 Beta-lactamase superfamily domain CLSA_c42510 PF00672 HAMP domain CLSA_c42510 PF02743 Cache domain CLSA_c42510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c42530 PF08220 DeoR-like helix-turn-helix domain CLSA_c42530 PF00455 DeoR C terminal sensor domain CLSA_c42540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c42540 PF00672 HAMP domain CLSA_c42540 PF02743 Cache domain CLSA_c42550 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CLSA_c42550 PF06165 Glycosyltransferase family 36 CLSA_c42550 PF10091 Putative glucoamylase CLSA_c42560 PF02127 Aminopeptidase I zinc metalloprotease (M18) CLSA_c42580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c42600 PF00701 Dihydrodipicolinate synthetase family CLSA_c42610 PF01545 Cation efflux family CLSA_c42610 PF16916 Dimerisation domain of Zinc Transporter CLSA_c42620 PF01431 Peptidase family M13 CLSA_c42620 PF05649 Peptidase family M13 CLSA_c42630 PF00005 ABC transporter CLSA_c42640 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c42650 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLSA_c42670 PF13538 UvrD-like helicase C-terminal domain CLSA_c42680 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c42680 PF06480 FtsH Extracellular CLSA_c42680 PF17862 AAA+ lid domain CLSA_c42680 PF01434 Peptidase family M41 CLSA_c42700 PF10502 Signal peptidase, peptidase S26 CLSA_c42710 PF10502 Signal peptidase, peptidase S26 CLSA_c42720 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLSA_c42720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLSA_c42760 PF00872 Transposase, Mutator family CLSA_c42770 PF17200 Single Cache domain 2 CLSA_c42770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c42770 PF00672 HAMP domain CLSA_c42780 PF00403 Heavy-metal-associated domain CLSA_c42790 PF00403 Heavy-metal-associated domain CLSA_c42800 PF02583 Metal-sensitive transcriptional repressor CLSA_c42810 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLSA_c42810 PF00149 Calcineurin-like phosphoesterase CLSA_c42840 PF02517 CPBP intramembrane metalloprotease CLSA_c42850 PF00795 Carbon-nitrogen hydrolase CLSA_c42880 PF01594 AI-2E family transporter CLSA_c42890 PF05958 tRNA (Uracil-5-)-methyltransferase CLSA_c42890 PF01938 TRAM domain CLSA_c42900 PF00224 Pyruvate kinase, barrel domain CLSA_c42900 PF02887 Pyruvate kinase, alpha/beta domain CLSA_c42910 PF00365 Phosphofructokinase CLSA_c42920 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLSA_c42920 PF02811 PHP domain CLSA_c42920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLSA_c42920 PF01336 OB-fold nucleic acid binding domain CLSA_c42920 PF14579 Helix-hairpin-helix motif CLSA_c42940 PF10298 WhiA N-terminal LAGLIDADG-like domain CLSA_c42940 PF14527 WhiA LAGLIDADG-like domain CLSA_c42940 PF02650 WhiA C-terminal HTH domain CLSA_c42950 PF01933 Uncharacterised protein family UPF0052 CLSA_c42960 PF03668 P-loop ATPase protein family CLSA_c42970 PF01565 FAD binding domain CLSA_c42970 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLSA_c42990 PF12826 Helix-hairpin-helix motif CLSA_c42990 PF02151 UvrB/uvrC motif CLSA_c42990 PF08459 UvrC Helix-hairpin-helix N-terminal CLSA_c42990 PF01541 GIY-YIG catalytic domain CLSA_c43000 PF00905 Penicillin binding protein transpeptidase domain CLSA_c43010 PF01098 Cell cycle protein CLSA_c43020 PF16697 Inner membrane component of T3SS, cytoplasmic domain CLSA_c43030 PF17755 UvrA DNA-binding domain CLSA_c43030 PF17760 UvrA interaction domain CLSA_c43040 PF12344 Ultra-violet resistance protein B CLSA_c43040 PF02151 UvrB/uvrC motif CLSA_c43040 PF04851 Type III restriction enzyme, res subunit CLSA_c43040 PF00271 Helicase conserved C-terminal domain CLSA_c43040 PF17757 UvrB interaction domain CLSA_c43050 PF00324 Amino acid permease CLSA_c43070 PF01471 Putative peptidoglycan binding domain CLSA_c43070 PF03572 Peptidase family S41 CLSA_c43070 PF17820 PDZ domain CLSA_c43080 PF02687 FtsX-like permease family CLSA_c43080 PF18075 FtsX extracellular domain CLSA_c43090 PF00005 ABC transporter CLSA_c43100 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLSA_c43100 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLSA_c43110 PF02779 Transketolase, pyrimidine binding domain CLSA_c43110 PF02780 Transketolase, C-terminal domain CLSA_c43120 PF00456 Transketolase, thiamine diphosphate binding domain CLSA_c43130 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLSA_c43170 PF01256 Carbohydrate kinase CLSA_c43170 PF03853 YjeF-related protein N-terminus CLSA_c43180 PF01648 4'-phosphopantetheinyl transferase superfamily CLSA_c43200 PF00436 Single-strand binding protein family CLSA_c43210 PF03631 Virulence factor BrkB CLSA_c43220 PF00550 Phosphopantetheine attachment site CLSA_c43230 PF03062 MBOAT, membrane-bound O-acyltransferase family CLSA_c43240 PF13193 AMP-binding enzyme C-terminal domain CLSA_c43240 PF00501 AMP-binding enzyme CLSA_c43270 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLSA_c43270 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLSA_c43270 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLSA_c43280 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c43290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLSA_c43320 PF18277 AbrB C-terminal domain CLSA_c43320 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLSA_c43330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLSA_c43340 PF05175 Methyltransferase small domain CLSA_c43350 PF00877 NlpC/P60 family CLSA_c43370 PF13419 Haloacid dehalogenase-like hydrolase CLSA_c43380 PF00872 Transposase, Mutator family CLSA_c43390 PF13145 PPIC-type PPIASE domain CLSA_c43400 PF03167 Uracil DNA glycosylase superfamily CLSA_c43440 PF02146 Sir2 family CLSA_c43470 PF02464 Competence-damaged protein CLSA_c43470 PF18146 Damage-inducible protein CinA KH domain CLSA_c43470 PF00994 Probable molybdopterin binding domain CLSA_c43480 PF00480 ROK family CLSA_c43510 PF13276 HTH-like domain CLSA_c43510 PF00665 Integrase core domain CLSA_c43510 PF13333 Integrase core domain CLSA_c43520 PF03144 Elongation factor Tu domain 2 CLSA_c43520 PF00009 Elongation factor Tu GTP binding domain CLSA_c43520 PF03764 Elongation factor G, domain IV CLSA_c43520 PF14492 Elongation Factor G, domain II CLSA_c43520 PF00679 Elongation factor G C-terminus CLSA_c43540 PF00884 Sulfatase CLSA_c43680 PF03618 Kinase/pyrophosphorylase CLSA_c43720 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLSA_c43720 PF00056 lactate/malate dehydrogenase, NAD binding domain CLSA_c43770 PF00483 Nucleotidyl transferase CLSA_c43780 PF00483 Nucleotidyl transferase CLSA_c43780 PF00132 Bacterial transferase hexapeptide (six repeats) CLSA_c43790 PF00686 Starch binding domain CLSA_c43790 PF02903 Alpha amylase, N-terminal ig-like domain CLSA_c43790 PF00128 Alpha amylase, catalytic domain CLSA_c43800 PF00343 Carbohydrate phosphorylase CLSA_c43810 PF08323 Starch synthase catalytic domain CLSA_c43810 PF00534 Glycosyl transferases group 1 CLSA_c43820 PF02806 Alpha amylase, C-terminal all-beta domain CLSA_c43820 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLSA_c43820 PF00128 Alpha amylase, catalytic domain CLSA_c43870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLSA_c43870 PF02378 Phosphotransferase system, EIIC CLSA_c43870 PF00367 phosphotransferase system, EIIB CLSA_c43880 PF00367 phosphotransferase system, EIIB CLSA_c43880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLSA_c43880 PF02378 Phosphotransferase system, EIIC CLSA_c43890 PF03123 CAT RNA binding domain CLSA_c43890 PF00874 PRD domain CLSA_c43910 PF00899 ThiF family CLSA_c43920 PF04055 Radical SAM superfamily CLSA_c43920 PF06968 Biotin and Thiamin Synthesis associated domain CLSA_c43930 PF01048 Phosphorylase superfamily CLSA_c43970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLSA_c43970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLSA_c43980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLSA_c43990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLSA_c43990 PF00005 ABC transporter CLSA_c44000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLSA_c44000 PF00005 ABC transporter CLSA_c44010 PF12911 N-terminal TM domain of oligopeptide transport permease C CLSA_c44010 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c44020 PF00528 Binding-protein-dependent transport system inner membrane component CLSA_c44040 PF01431 Peptidase family M13 CLSA_c44040 PF05649 Peptidase family M13 CLSA_c44080 PF02132 RecR protein CLSA_c44080 PF13662 Toprim domain CLSA_c44090 PF02575 YbaB/EbfC DNA-binding family CLSA_c44100 PF12169 DNA polymerase III subunits gamma and tau domain III CLSA_c44120 PF00303 Thymidylate synthase CLSA_c44130 PF00186 Dihydrofolate reductase CLSA_c44140 PF01638 HxlR-like helix-turn-helix CLSA_c44180 PF01566 Natural resistance-associated macrophage protein CLSA_c44190 PF01769 Divalent cation transporter CLSA_c44190 PF03448 MgtE intracellular N domain CLSA_c44190 PF00571 CBS domain CLSA_c44200 PF01098 Cell cycle protein CLSA_c44240 PF14437 MafB19-like deaminase CLSA_c44250 PF01595 Cyclin M transmembrane N-terminal domain CLSA_c44250 PF03471 Transporter associated domain CLSA_c44250 PF00571 CBS domain CLSA_c44270 PF00294 pfkB family carbohydrate kinase CLSA_c44280 PF00251 Glycosyl hydrolases family 32 N-terminal domain CLSA_c44280 PF08244 Glycosyl hydrolases family 32 C terminal CLSA_c44290 PF00356 Bacterial regulatory proteins, lacI family CLSA_c44290 PF13407 Periplasmic binding protein domain CLSA_c44300 PF02378 Phosphotransferase system, EIIC CLSA_c44300 PF00367 phosphotransferase system, EIIB CLSA_c44310 PF01381 Helix-turn-helix CLSA_c44320 PF00005 ABC transporter CLSA_c44320 PF00664 ABC transporter transmembrane region CLSA_c44330 PF00664 ABC transporter transmembrane region CLSA_c44330 PF00005 ABC transporter CLSA_c44350 PF07690 Major Facilitator Superfamily CLSA_c44370 PF02491 SHS2 domain inserted in FTSA CLSA_c44400 PF02016 LD-carboxypeptidase N-terminal domain CLSA_c44400 PF17676 LD-carboxypeptidase C-terminal domain CLSA_c44430 PF00072 Response regulator receiver domain CLSA_c44430 PF04397 LytTr DNA-binding domain CLSA_c44440 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLSA_c44440 PF17203 Single cache domain 3 CLSA_c44440 PF00989 PAS fold CLSA_c44440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLSA_c44460 PF04647 Accessory gene regulator B CLSA_c44480 PF03412 Peptidase C39 family CLSA_c44480 PF00005 ABC transporter CLSA_c44480 PF00664 ABC transporter transmembrane region CLSA_c44510 PF00005 ABC transporter CLSA_c44520 PF03358 NADPH-dependent FMN reductase CLSA_c44580 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLSA_c44580 PF01348 Type II intron maturase CLSA_c44650 PF01553 Acyltransferase CLSA_c44660 PF00271 Helicase conserved C-terminal domain CLSA_c44660 PF00270 DEAD/DEAH box helicase CLSA_c44680 PF00874 PRD domain CLSA_c44680 PF00158 Sigma-54 interaction domain CLSA_c44680 PF03610 PTS system fructose IIA component CLSA_c44690 PF03830 PTS system sorbose subfamily IIB component CLSA_c44690 PF03610 PTS system fructose IIA component CLSA_c44700 PF03830 PTS system sorbose subfamily IIB component CLSA_c44700 PF03610 PTS system fructose IIA component CLSA_c44710 PF12627 Probable RNA and SrmB- binding site of polymerase A CLSA_c44710 PF01743 Poly A polymerase head domain CLSA_c44710 PF01966 HD domain CLSA_c44720 PF00543 Nitrogen regulatory protein P-II CLSA_c44730 PF00909 Ammonium Transporter Family CLSA_c44760 PF00916 Sulfate permease family CLSA_c44760 PF01740 STAS domain CLSA_c44780 PF00701 Dihydrodipicolinate synthetase family CLSA_c44800 PF01925 Sulfite exporter TauE/SafE CLSA_c44900 PF01174 SNO glutamine amidotransferase family CLSA_c44910 PF01680 SOR/SNZ family CLSA_c44930 PF01171 PP-loop family CLSA_c44990 PF08239 Bacterial SH3 domain CLSA_c44990 PF01520 N-acetylmuramoyl-L-alanine amidase CLSA_c45050 PF02590 Predicted SPOUT methyltransferase CLSA_c45070 PF02743 Cache domain CLSA_c45070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLSA_c45070 PF00672 HAMP domain CLSA_c45080 PF02810 SEC-C motif CLSA_c45080 PF07517 SecA DEAD-like domain CLSA_c45080 PF01043 SecA preprotein cross-linking domain CLSA_c45080 PF07516 SecA Wing and Scaffold domain CLSA_c45090 PF00753 Metallo-beta-lactamase superfamily CLSA_c45100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLSA_c45150 PF00082 Subtilase family CLSA_c45250 PF00709 Adenylosuccinate synthetase CLSA_c45260 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLSA_c45260 PF03807 NADP oxidoreductase coenzyme F420-dependent CLSA_c45270 PF00772 DnaB-like helicase N terminal domain CLSA_c45270 PF03796 DnaB-like helicase C terminal domain CLSA_c45280 PF00004 ATPase family associated with various cellular activities (AAA) CLSA_c45280 PF05362 Lon protease (S16) C-terminal proteolytic domain CLSA_c45290 PF03948 Ribosomal protein L9, C-terminal domain CLSA_c45290 PF01281 Ribosomal protein L9, N-terminal domain CLSA_c45300 PF01368 DHH family CLSA_c45300 PF02272 DHHA1 domain CLSA_c45320 PF01084 Ribosomal protein S18 CLSA_c45330 PF00436 Single-strand binding protein family CLSA_c45340 PF01250 Ribosomal protein S6 CLSA_c45360 PF00924 Mechanosensitive ion channel CLSA_c45390 PF00266 Aminotransferase class-V CLSA_c45400 PF06866 Protein of unknown function (DUF1256) CLSA_c45420 PF02195 ParB-like nuclease domain CLSA_c45420 PF17762 HTH domain found in ParB protein CLSA_c45430 PF13614 AAA domain CLSA_c45440 PF02195 ParB-like nuclease domain CLSA_c45440 PF17762 HTH domain found in ParB protein CLSA_c45450 PF02527 rRNA small subunit methyltransferase G CLSA_c45460 PF13932 GidA associated domain CLSA_c45460 PF01134 Glucose inhibited division protein A CLSA_c45470 PF10396 GTP-binding protein TrmE N-terminus CLSA_c45470 PF01926 50S ribosome-binding GTPase CLSA_c45470 PF12631 MnmE helical domain CLSA_c45480 PF14804 Jag N-terminus CLSA_c45480 PF01424 R3H domain CLSA_c45490 PF02096 60Kd inner membrane protein CLSA_c45500 PF01809 Putative membrane protein insertion efficiency factor CLSA_c45510 PF00825 Ribonuclease P CLSA_c45520 PF00468 Ribosomal protein L34