CLSA_c00010 SM00382 ATPases associated with a variety of cellular activities CLSA_c00010 SM00760 Bacterial dnaA protein helix-turn-helix domain CLSA_c00020 SM00480 DNA polymerase III beta subunit CLSA_c00030 SM00363 S4 RNA-binding domain CLSA_c00060 SM00387 Histidine kinase-like ATPases CLSA_c00060 SM00433 TopoisomeraseII CLSA_c00070 SM00434 DNA Topoisomerase IV CLSA_c00270 SM00387 Histidine kinase-like ATPases CLSA_c00270 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c00290 SM00422 helix_turn_helix, mercury resistance CLSA_c00340 SM00902 Iron hydrogenase small subunit CLSA_c00350 SM00382 ATPases associated with a variety of cellular activities CLSA_c00410 SM00851 MGS-like domain CLSA_c00430 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CLSA_c00440 SM00851 MGS-like domain CLSA_c00440 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLSA_c00470 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c00510 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c00550 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c00580 SM00448 cheY-homologous receiver domain CLSA_c00580 SM00862 Transcriptional regulatory protein, C terminal CLSA_c00590 SM00387 Histidine kinase-like ATPases CLSA_c00590 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c00630 SM00354 helix_turn _helix lactose operon repressor CLSA_c00640 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c00690 SM01011 Aminopeptidase P, N-terminal domain CLSA_c00750 SM01208 CLSA_c00750 CLSA_c00760 SM00493 CLSA_c00760 CLSA_c00770 SM00650 Ribosomal RNA adenine dimethylases CLSA_c01070 SM01400 CLSA_c01070 CLSA_c01080 SM00448 cheY-homologous receiver domain CLSA_c01080 SM00862 Transcriptional regulatory protein, C terminal CLSA_c01090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c01090 SM00387 Histidine kinase-like ATPases CLSA_c01090 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c01110 SM00487 DEAD-like helicases superfamily CLSA_c01110 SM00490 helicase superfamily c-terminal domain CLSA_c01110 SM00982 CLSA_c01110 CLSA_c01110 SM01058 CarD-like/TRCF domain CLSA_c01140 SM00382 ATPases associated with a variety of cellular activities CLSA_c01160 SM00966 SpoVT / AbrB like domain CLSA_c01190 SM00411 bacterial (prokaryotic) histone like domain CLSA_c01200 SM00363 S4 RNA-binding domain CLSA_c01240 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c01350 SM00331 Sigma factor PP2C-like phosphatases CLSA_c01360 SM00977 TilS substrate C-terminal domain CLSA_c01380 SM00382 ATPases associated with a variety of cellular activities CLSA_c01710 SM00382 ATPases associated with a variety of cellular activities CLSA_c01710 SM01086 C-terminal, D2-small domain, of ClpB protein CLSA_c01740 SM00382 ATPases associated with a variety of cellular activities CLSA_c01770 SM00670 Large family of predicted nucleotide-binding domains CLSA_c01800 SM00840 CLSA_c01800 CLSA_c01820 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLSA_c01890 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CLSA_c01900 SM00649 Ribosomal protein L11/L12 CLSA_c01950 SM00663 RNA polymerase I subunit A N-terminus CLSA_c01980 SM00838 Elongation factor G C-terminus CLSA_c01980 SM00889 Elongation factor G, domain IV CLSA_c02000 SM01403 CLSA_c02000 CLSA_c02040 SM01382 CLSA_c02040 CLSA_c02040 SM01383 CLSA_c02040 CLSA_c02070 SM00322 K homology RNA-binding domain CLSA_c02120 SM01374 CLSA_c02120 CLSA_c02130 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLSA_c02260 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c02300 SM00363 S4 RNA-binding domain CLSA_c02300 SM01390 CLSA_c02300 CLSA_c02310 SM00662 RNA polymerases D CLSA_c02330 SM00382 ATPases associated with a variety of cellular activities CLSA_c02340 SM00382 ATPases associated with a variety of cellular activities CLSA_c02390 SM00646 CLSA_c02390 CLSA_c02430 SM00028 Tetratricopeptide repeats CLSA_c02440 SM00448 cheY-homologous receiver domain CLSA_c02440 SM00862 Transcriptional regulatory protein, C terminal CLSA_c02450 SM00387 Histidine kinase-like ATPases CLSA_c02450 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c02490 SM00028 Tetratricopeptide repeats CLSA_c02590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c02610 SM00905 Dihydroneopterin aldolase CLSA_c02680 SM00917 LeuA allosteric (dimerisation) domain CLSA_c02710 SM01329 CLSA_c02710 CLSA_c02760 SM00854 Bacterial capsule synthesis protein PGA_cap CLSA_c02790 SM00382 ATPases associated with a variety of cellular activities CLSA_c02810 SM00382 ATPases associated with a variety of cellular activities CLSA_c02850 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c03040 SM00382 ATPases associated with a variety of cellular activities CLSA_c03070 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c03150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c03160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c03160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c03170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c03170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c03240 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLSA_c03270 SM00507 HNH nucleases CLSA_c03330 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c03330 SM00876 Biotin and Thiamin Synthesis associated domain CLSA_c03360 SM00448 cheY-homologous receiver domain CLSA_c03360 SM00850 LytTr DNA-binding domain CLSA_c03400 SM00382 ATPases associated with a variety of cellular activities CLSA_c03450 SM00831 Cation transporter/ATPase, N-terminus CLSA_c03470 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c03470 SM00895 CLSA_c03470 CLSA_c03480 SM00893 Electron transfer flavoprotein domain CLSA_c03490 SM00893 Electron transfer flavoprotein domain CLSA_c03550 SM00881 CoA binding domain CLSA_c03580 SM00893 Electron transfer flavoprotein domain CLSA_c03590 SM00893 Electron transfer flavoprotein domain CLSA_c03620 SM00478 endonuclease III CLSA_c03650 SM00883 Chaperonin 10 Kd subunit CLSA_c03680 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c03680 SM01240 CLSA_c03680 CLSA_c03730 SM00448 cheY-homologous receiver domain CLSA_c03730 SM00862 Transcriptional regulatory protein, C terminal CLSA_c03740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c03740 SM00387 Histidine kinase-like ATPases CLSA_c03740 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c03800 SM00363 S4 RNA-binding domain CLSA_c03820 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLSA_c03820 SM00292 breast cancer carboxy-terminal domain CLSA_c03820 SM00532 Ligase N family CLSA_c03860 SM00845 GatB domain CLSA_c04130 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c04140 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c04180 SM00966 SpoVT / AbrB like domain CLSA_c04190 SM01040 BRO family, N-terminal domain CLSA_c04410 SM00646 CLSA_c04410 CLSA_c04420 SM00487 DEAD-like helicases superfamily CLSA_c04510 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c04750 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLSA_c04850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c04850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c04870 SM00257 Lysin motif CLSA_c04960 SM00357 Cold shock protein domain CLSA_c04960 SM00382 ATPases associated with a variety of cellular activities CLSA_c04960 SM00959 Rho termination factor, N-terminal domain CLSA_c05010 SM00937 CLSA_c05010 CLSA_c05150 SM00382 ATPases associated with a variety of cellular activities CLSA_c05330 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLSA_c05330 SM00382 ATPases associated with a variety of cellular activities CLSA_c05370 SM00957 SecA DEAD-like domain CLSA_c05370 SM00958 SecA preprotein cross-linking domain CLSA_c05380 SM00937 CLSA_c05380 CLSA_c05420 SM00448 cheY-homologous receiver domain CLSA_c05420 SM00862 Transcriptional regulatory protein, C terminal CLSA_c05430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c05430 SM00387 Histidine kinase-like ATPases CLSA_c05430 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c05450 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c05450 SM00732 Likely ribonuclease with RNase H fold. CLSA_c05590 SM00900 CLSA_c05590 CLSA_c05760 SM00448 cheY-homologous receiver domain CLSA_c05760 SM00850 LytTr DNA-binding domain CLSA_c05770 SM00387 Histidine kinase-like ATPases CLSA_c05780 SM00793 Accessory gene regulator B CLSA_c05800 SM00382 ATPases associated with a variety of cellular activities CLSA_c05880 SM00849 Metallo-beta-lactamase superfamily CLSA_c05970 SM00534 ATPase domain of DNA mismatch repair MUTS family CLSA_c05980 SM00479 CLSA_c05980 CLSA_c05990 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c06050 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c06240 SM00448 cheY-homologous receiver domain CLSA_c06240 SM00862 Transcriptional regulatory protein, C terminal CLSA_c06250 SM00387 Histidine kinase-like ATPases CLSA_c06250 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c06260 SM00382 ATPases associated with a variety of cellular activities CLSA_c06300 SM00448 cheY-homologous receiver domain CLSA_c06300 SM00862 Transcriptional regulatory protein, C terminal CLSA_c06310 SM00382 ATPases associated with a variety of cellular activities CLSA_c06330 SM00382 ATPases associated with a variety of cellular activities CLSA_c06350 SM00387 Histidine kinase-like ATPases CLSA_c06350 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c06370 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c06390 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c06440 SM01103 CLSA_c06440 CLSA_c06460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c06490 SM00936 Penicillin-binding protein 5, C-terminal domain CLSA_c06500 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLSA_c06700 SM00382 ATPases associated with a variety of cellular activities CLSA_c06720 SM00458 Ricin-type beta-trefoil CLSA_c06720 SM00633 Glycosyl hydrolase family 10 CLSA_c06730 SM00458 Ricin-type beta-trefoil CLSA_c06730 SM00606 Cellulose Binding Domain Type IV CLSA_c06760 SM00155 Phospholipase D. Active site motifs. CLSA_c06840 SM00830 Chorismate mutase type II CLSA_c06900 SM00606 Cellulose Binding Domain Type IV CLSA_c06920 SM00448 cheY-homologous receiver domain CLSA_c06920 SM00850 LytTr DNA-binding domain CLSA_c06970 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLSA_c06970 SM00534 ATPase domain of DNA mismatch repair MUTS family CLSA_c07070 SM01118 CLSA_c07070 CLSA_c07110 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c07180 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLSA_c07240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c07270 SM00448 cheY-homologous receiver domain CLSA_c07270 SM00862 Transcriptional regulatory protein, C terminal CLSA_c07280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c07280 SM00387 Histidine kinase-like ATPases CLSA_c07280 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c07300 SM00900 CLSA_c07300 CLSA_c07390 SM00267 diguanylate cyclase CLSA_c07390 SM01049 CLSA_c07390 CLSA_c07400 SM00341 Helicase and RNase D C-terminal CLSA_c07400 SM00487 DEAD-like helicases superfamily CLSA_c07400 SM00490 helicase superfamily c-terminal domain CLSA_c07400 SM00956 CLSA_c07400 CLSA_c07410 SM00481 DNA polymerase alpha chain like domain CLSA_c07420 SM00382 ATPases associated with a variety of cellular activities CLSA_c07440 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c07440 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CLSA_c07450 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c07450 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CLSA_c07470 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c07470 SM00448 cheY-homologous receiver domain CLSA_c07500 SM00382 ATPases associated with a variety of cellular activities CLSA_c07530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c07570 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c07580 SM01007 Class II Aldolase and Adducin N-terminal domain CLSA_c07600 SM00861 Transketolase, pyrimidine binding domain CLSA_c07640 SM00876 Biotin and Thiamin Synthesis associated domain CLSA_c07660 SM00947 Carbonic anhydrase CLSA_c07680 SM00897 FIST N domain CLSA_c07680 SM01204 CLSA_c07680 CLSA_c07690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c08040 SM00271 DnaJ molecular chaperone homology domain CLSA_c08070 SM00331 Sigma factor PP2C-like phosphatases CLSA_c08070 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLSA_c08080 SM00331 Sigma factor PP2C-like phosphatases CLSA_c08430 SM00823 Phosphopantetheine attachment site CLSA_c08500 SM00354 helix_turn _helix lactose operon repressor CLSA_c08590 SM00382 ATPases associated with a variety of cellular activities CLSA_c08600 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c08660 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c08680 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c08690 SM00382 ATPases associated with a variety of cellular activities CLSA_c08770 SM00793 Accessory gene regulator B CLSA_c08790 SM00387 Histidine kinase-like ATPases CLSA_c08970 SM00900 CLSA_c08970 CLSA_c09070 SM00487 DEAD-like helicases superfamily CLSA_c09180 SM01040 BRO family, N-terminal domain CLSA_c09250 SM00422 helix_turn_helix, mercury resistance CLSA_c09280 SM00857 Resolvase, N terminal domain CLSA_c09330 SM00220 Serine/Threonine protein kinases, catalytic domain CLSA_c09350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLSA_c09430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c09430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c09540 SM00382 ATPases associated with a variety of cellular activities CLSA_c09560 SM00382 ATPases associated with a variety of cellular activities CLSA_c09590 SM00448 cheY-homologous receiver domain CLSA_c09590 SM00862 Transcriptional regulatory protein, C terminal CLSA_c09600 SM00387 Histidine kinase-like ATPases CLSA_c09620 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c09620 SM00866 CLSA_c09620 CLSA_c09770 SM00382 ATPases associated with a variety of cellular activities CLSA_c09880 SM00148 Phospholipase C, catalytic domain (part); domain X CLSA_c09900 SM00637 CLSA_c09900 CLSA_c09960 SM00354 helix_turn _helix lactose operon repressor CLSA_c09990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c09990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c10040 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c10040 SM00871 Bacterial transcription activator, effector binding domain CLSA_c10080 SM01061 CAT RNA binding domain CLSA_c10090 SM00850 LytTr DNA-binding domain CLSA_c10100 SM00382 ATPases associated with a variety of cellular activities CLSA_c10170 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c10200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c10200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c10210 SM00878 Biotin carboxylase C-terminal domain CLSA_c10260 SM01134 CLSA_c10260 CLSA_c10360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c10380 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c10390 SM00100 Cyclic nucleotide-monophosphate binding domain CLSA_c10390 SM00419 helix_turn_helix, cAMP Regulatory protein CLSA_c10400 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c10400 SM01134 CLSA_c10400 CLSA_c10410 SM01133 CLSA_c10410 CLSA_c10430 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c10430 SM01091 Transporter associated domain CLSA_c10460 SM00382 ATPases associated with a variety of cellular activities CLSA_c10470 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c10480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c10520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c10520 SM00387 Histidine kinase-like ATPases CLSA_c10520 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c10530 SM00448 cheY-homologous receiver domain CLSA_c10530 SM00862 Transcriptional regulatory protein, C terminal CLSA_c10560 SM00382 ATPases associated with a variety of cellular activities CLSA_c10620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c10620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c10670 SM00387 Histidine kinase-like ATPases CLSA_c10800 SM00838 Elongation factor G C-terminus CLSA_c10820 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c10860 SM00271 DnaJ molecular chaperone homology domain CLSA_c10910 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c10970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c10990 SM00014 Acid phosphatase homologues CLSA_c11030 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c11060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c11070 SM00400 zinc finger CLSA_c11070 SM00493 CLSA_c11070 CLSA_c11170 SM00387 Histidine kinase-like ATPases CLSA_c11180 SM00448 cheY-homologous receiver domain CLSA_c11180 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c11240 SM00460 Transglutaminase/protease-like homologues CLSA_c11290 SM00481 DNA polymerase alpha chain like domain CLSA_c11340 SM00562 CLSA_c11340 CLSA_c11350 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c11430 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c11460 SM00382 ATPases associated with a variety of cellular activities CLSA_c11480 SM00382 ATPases associated with a variety of cellular activities CLSA_c11570 SM00327 von Willebrand factor (vWF) type A domain CLSA_c11580 SM00267 diguanylate cyclase CLSA_c11610 SM01230 CLSA_c11610 CLSA_c11620 SM01012 CLSA_c11620 CLSA_c11660 SM01329 CLSA_c11660 CLSA_c11750 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CLSA_c11750 SM00475 5'-3' exonuclease CLSA_c11750 SM00482 DNA polymerase A domain CLSA_c11790 SM00382 ATPases associated with a variety of cellular activities CLSA_c11900 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CLSA_c11930 SM00387 Histidine kinase-like ATPases CLSA_c11930 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c11940 SM00387 Histidine kinase-like ATPases CLSA_c11940 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c11960 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLSA_c11960 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLSA_c11960 SM00493 CLSA_c11960 CLSA_c11980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c11980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c12010 SM00382 ATPases associated with a variety of cellular activities CLSA_c12060 SM00903 Flavin reductase like domain CLSA_c12090 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c12090 SM01134 CLSA_c12090 CLSA_c12220 SM00463 Small MutS-related domain CLSA_c12220 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLSA_c12220 SM00534 ATPase domain of DNA mismatch repair MUTS family CLSA_c12300 SM00028 Tetratricopeptide repeats CLSA_c12400 SM00028 Tetratricopeptide repeats CLSA_c12480 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CLSA_c12570 SM00479 CLSA_c12570 CLSA_c12630 SM00836 DALR anticodon binding domain CLSA_c12630 SM01016 Arginyl tRNA synthetase N terminal dom CLSA_c12700 SM00849 Metallo-beta-lactamase superfamily CLSA_c12740 SM00344 helix_turn_helix ASNC type CLSA_c12760 SM00481 DNA polymerase alpha chain like domain CLSA_c12780 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c12830 SM00382 ATPases associated with a variety of cellular activities CLSA_c12900 SM00244 prohibitin homologues CLSA_c12920 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c12940 SM00382 ATPases associated with a variety of cellular activities CLSA_c12960 SM01211 CLSA_c12960 CLSA_c12970 SM01001 AIR carboxylase CLSA_c13020 SM00798 AICARFT/IMPCHase bienzyme CLSA_c13020 SM00851 MGS-like domain CLSA_c13030 SM01209 CLSA_c13030 CLSA_c13030 SM01210 CLSA_c13030 CLSA_c13040 SM00028 Tetratricopeptide repeats CLSA_c13070 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c13110 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CLSA_c13120 SM00822 CLSA_c13120 CLSA_c13130 SM00825 Beta-ketoacyl synthase CLSA_c13160 SM00878 Biotin carboxylase C-terminal domain CLSA_c13200 SM00382 ATPases associated with a variety of cellular activities CLSA_c13270 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLSA_c13290 SM00732 Likely ribonuclease with RNase H fold. CLSA_c13320 SM00849 Metallo-beta-lactamase superfamily CLSA_c13330 SM00838 Elongation factor G C-terminus CLSA_c13390 SM00842 Cell division protein FtsA CLSA_c13400 SM00864 Tubulin/FtsZ family, GTPase domain CLSA_c13400 SM00865 Tubulin/FtsZ family, C-terminal domain CLSA_c13470 SM00448 cheY-homologous receiver domain CLSA_c13470 SM00862 Transcriptional regulatory protein, C terminal CLSA_c13480 SM00091 PAS domain CLSA_c13480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c13480 SM00387 Histidine kinase-like ATPases CLSA_c13480 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c13520 SM00382 ATPases associated with a variety of cellular activities CLSA_c13550 SM00382 ATPases associated with a variety of cellular activities CLSA_c13620 SM00072 Guanylate kinase homologues. CLSA_c13630 SM01409 CLSA_c13630 CLSA_c13650 SM00487 DEAD-like helicases superfamily CLSA_c13650 SM00490 helicase superfamily c-terminal domain CLSA_c13710 SM00331 Sigma factor PP2C-like phosphatases CLSA_c13710 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLSA_c13720 SM00220 Serine/Threonine protein kinases, catalytic domain CLSA_c13720 SM00740 CLSA_c13720 CLSA_c13750 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CLSA_c13780 SM01120 CLSA_c13780 CLSA_c13780 SM01121 CLSA_c13780 CLSA_c13790 SM00487 DEAD-like helicases superfamily CLSA_c13790 SM00490 helicase superfamily c-terminal domain CLSA_c13910 SM00358 Double-stranded RNA binding motif CLSA_c13910 SM00535 Ribonuclease III family CLSA_c13920 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c13930 SM00968 SMC proteins Flexible Hinge Domain CLSA_c13940 SM00382 ATPases associated with a variety of cellular activities CLSA_c13940 SM00962 SRP54-type protein, GTPase domain CLSA_c13940 SM00963 SRP54-type protein, helical bundle domain CLSA_c13960 SM00382 ATPases associated with a variety of cellular activities CLSA_c13960 SM00962 SRP54-type protein, GTPase domain CLSA_c13960 SM00963 SRP54-type protein, helical bundle domain CLSA_c14060 SM00382 ATPases associated with a variety of cellular activities CLSA_c14080 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLSA_c14080 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLSA_c14080 SM00493 CLSA_c14080 CLSA_c14380 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c14380 SM00322 K homology RNA-binding domain CLSA_c14450 SM00904 Riboflavin kinase CLSA_c14460 SM01387 CLSA_c14460 CLSA_c14470 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c14470 SM00322 K homology RNA-binding domain CLSA_c14520 SM00843 CLSA_c14520 CLSA_c14530 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c14550 SM00382 ATPases associated with a variety of cellular activities CLSA_c14560 SM00322 K homology RNA-binding domain CLSA_c14560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c14590 SM00998 Adenylosuccinate lyase C-terminus CLSA_c14670 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c14680 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c14680 SM00382 ATPases associated with a variety of cellular activities CLSA_c14740 SM00460 Transglutaminase/protease-like homologues CLSA_c14760 SM00671 Sel1-like repeats. CLSA_c14860 SM00479 CLSA_c14860 CLSA_c14910 SM00518 AP endonuclease family 2 CLSA_c14950 SM00260 Two component signalling adaptor domain CLSA_c14950 SM00448 cheY-homologous receiver domain CLSA_c14960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c15010 SM00450 Rhodanese Homology Domain CLSA_c15110 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c15120 SM00422 helix_turn_helix, mercury resistance CLSA_c15170 SM00287 Bacterial SH3 domain homologues CLSA_c15250 SM00014 Acid phosphatase homologues CLSA_c15290 SM00344 helix_turn_helix ASNC type CLSA_c15390 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c15410 SM00382 ATPases associated with a variety of cellular activities CLSA_c15510 SM00838 Elongation factor G C-terminus CLSA_c15510 SM00889 Elongation factor G, domain IV CLSA_c15550 SM01120 CLSA_c15550 CLSA_c15840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c15850 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c15890 SM00382 ATPases associated with a variety of cellular activities CLSA_c15920 SM00354 helix_turn _helix lactose operon repressor CLSA_c16000 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c16130 SM00382 ATPases associated with a variety of cellular activities CLSA_c16320 SM00014 Acid phosphatase homologues CLSA_c16330 SM00448 cheY-homologous receiver domain CLSA_c16330 SM00862 Transcriptional regulatory protein, C terminal CLSA_c16340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c16340 SM00387 Histidine kinase-like ATPases CLSA_c16340 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c16360 SM00387 Histidine kinase-like ATPases CLSA_c16360 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c16460 SM00849 Metallo-beta-lactamase superfamily CLSA_c16490 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c16520 SM00422 helix_turn_helix, mercury resistance CLSA_c16540 SM00871 Bacterial transcription activator, effector binding domain CLSA_c16630 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c16710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLSA_c16730 SM00382 ATPases associated with a variety of cellular activities CLSA_c16740 SM00226 Low molecular weight phosphatase family CLSA_c16780 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c16840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c16860 SM00363 S4 RNA-binding domain CLSA_c16860 SM01390 CLSA_c16860 CLSA_c16870 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c16970 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c17000 SM00382 ATPases associated with a variety of cellular activities CLSA_c17010 SM00382 ATPases associated with a variety of cellular activities CLSA_c17020 SM00382 ATPases associated with a variety of cellular activities CLSA_c17040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c17050 SM00529 Helix-turn-helix diphteria tox regulatory element CLSA_c17110 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c17120 SM00382 ATPases associated with a variety of cellular activities CLSA_c17130 SM00382 ATPases associated with a variety of cellular activities CLSA_c17310 SM01058 CarD-like/TRCF domain CLSA_c17360 SM00917 LeuA allosteric (dimerisation) domain CLSA_c17370 SM00387 Histidine kinase-like ATPases CLSA_c17370 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c17470 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c17580 SM00382 ATPases associated with a variety of cellular activities CLSA_c17610 SM01001 AIR carboxylase CLSA_c17620 SM00487 DEAD-like helicases superfamily CLSA_c17620 SM00490 helicase superfamily c-terminal domain CLSA_c17630 SM00487 DEAD-like helicases superfamily CLSA_c17630 SM00490 helicase superfamily c-terminal domain CLSA_c17650 SM00341 Helicase and RNase D C-terminal CLSA_c17650 SM00487 DEAD-like helicases superfamily CLSA_c17650 SM00490 helicase superfamily c-terminal domain CLSA_c17650 SM00956 CLSA_c17650 CLSA_c17670 SM00271 DnaJ molecular chaperone homology domain CLSA_c17680 SM00487 DEAD-like helicases superfamily CLSA_c17680 SM00490 helicase superfamily c-terminal domain CLSA_c17750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLSA_c17850 SM01061 CAT RNA binding domain CLSA_c17880 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c17880 SM00895 CLSA_c17880 CLSA_c17910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c17910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c17960 SM00422 helix_turn_helix, mercury resistance CLSA_c17970 SM00861 Transketolase, pyrimidine binding domain CLSA_c18040 SM00382 ATPases associated with a variety of cellular activities CLSA_c18130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c18130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c18170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c18190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c18190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c18210 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c18250 SM00382 ATPases associated with a variety of cellular activities CLSA_c18260 SM00382 ATPases associated with a variety of cellular activities CLSA_c18370 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLSA_c18480 SM00849 Metallo-beta-lactamase superfamily CLSA_c18490 SM00458 Ricin-type beta-trefoil CLSA_c18520 SM00387 Histidine kinase-like ATPases CLSA_c18520 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c18540 SM00849 Metallo-beta-lactamase superfamily CLSA_c18760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c18770 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c18780 SM01217 CLSA_c18780 CLSA_c18800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c18800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c18840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c18840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c18930 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c18950 SM00060 Fibronectin type 3 domain CLSA_c18990 SM00091 PAS domain CLSA_c18990 SM00387 Histidine kinase-like ATPases CLSA_c18990 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c19020 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c19040 SM00893 Electron transfer flavoprotein domain CLSA_c19050 SM00893 Electron transfer flavoprotein domain CLSA_c19170 SM00382 ATPases associated with a variety of cellular activities CLSA_c19230 SM00487 DEAD-like helicases superfamily CLSA_c19230 SM00490 helicase superfamily c-terminal domain CLSA_c19370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c19400 SM00646 CLSA_c19400 CLSA_c19420 SM00422 helix_turn_helix, mercury resistance CLSA_c19430 SM00382 ATPases associated with a variety of cellular activities CLSA_c19440 SM00382 ATPases associated with a variety of cellular activities CLSA_c19470 SM00354 helix_turn _helix lactose operon repressor CLSA_c19540 SM00858 CLSA_c19540 CLSA_c19580 SM00421 helix_turn_helix, Lux Regulon CLSA_c19650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c19660 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c19700 SM00448 cheY-homologous receiver domain CLSA_c19700 SM00850 LytTr DNA-binding domain CLSA_c19720 SM00387 Histidine kinase-like ATPases CLSA_c19720 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c19730 SM00448 cheY-homologous receiver domain CLSA_c19730 SM00862 Transcriptional regulatory protein, C terminal CLSA_c19770 SM00710 Parallel beta-helix repeats CLSA_c19780 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c19950 SM00490 helicase superfamily c-terminal domain CLSA_c19960 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c19960 SM00871 Bacterial transcription activator, effector binding domain CLSA_c20020 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c20040 SM00138 Methyltransferase, chemotaxis proteins CLSA_c20050 SM00073 Histidine Phosphotransfer domain CLSA_c20050 SM00260 Two component signalling adaptor domain CLSA_c20050 SM00387 Histidine kinase-like ATPases CLSA_c20050 SM01231 CLSA_c20050 CLSA_c20060 SM00448 cheY-homologous receiver domain CLSA_c20070 SM00260 Two component signalling adaptor domain CLSA_c20080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c20090 SM00382 ATPases associated with a variety of cellular activities CLSA_c20120 SM00382 ATPases associated with a variety of cellular activities CLSA_c20140 SM00448 cheY-homologous receiver domain CLSA_c20140 SM00862 Transcriptional regulatory protein, C terminal CLSA_c20150 SM00387 Histidine kinase-like ATPases CLSA_c20150 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c20230 SM00448 cheY-homologous receiver domain CLSA_c20230 SM00862 Transcriptional regulatory protein, C terminal CLSA_c20240 SM00382 ATPases associated with a variety of cellular activities CLSA_c20270 SM00387 Histidine kinase-like ATPases CLSA_c20270 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c20300 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c20340 SM00382 ATPases associated with a variety of cellular activities CLSA_c20350 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c20370 SM00267 diguanylate cyclase CLSA_c20380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c20390 SM00260 Two component signalling adaptor domain CLSA_c20400 SM00448 cheY-homologous receiver domain CLSA_c20420 SM00138 Methyltransferase, chemotaxis proteins CLSA_c20430 SM00448 cheY-homologous receiver domain CLSA_c20440 SM00073 Histidine Phosphotransfer domain CLSA_c20440 SM00260 Two component signalling adaptor domain CLSA_c20440 SM00387 Histidine kinase-like ATPases CLSA_c20440 SM01231 CLSA_c20440 CLSA_c20450 SM00448 cheY-homologous receiver domain CLSA_c20500 SM00387 Histidine kinase-like ATPases CLSA_c20510 SM00331 Sigma factor PP2C-like phosphatases CLSA_c20520 SM00387 Histidine kinase-like ATPases CLSA_c20530 SM00073 Histidine Phosphotransfer domain CLSA_c20540 SM00448 cheY-homologous receiver domain CLSA_c20570 SM00260 Two component signalling adaptor domain CLSA_c20580 SM00448 cheY-homologous receiver domain CLSA_c20630 SM00382 ATPases associated with a variety of cellular activities CLSA_c20680 SM00640 Glycosyl hydrolases family 32 CLSA_c20700 SM00354 helix_turn _helix lactose operon repressor CLSA_c20730 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c20800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c20800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c20820 SM00091 PAS domain CLSA_c20820 SM00331 Sigma factor PP2C-like phosphatases CLSA_c20850 SM00448 cheY-homologous receiver domain CLSA_c20850 SM00862 Transcriptional regulatory protein, C terminal CLSA_c20860 SM00382 ATPases associated with a variety of cellular activities CLSA_c20880 SM00387 Histidine kinase-like ATPases CLSA_c20880 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c20960 SM00448 cheY-homologous receiver domain CLSA_c20960 SM00862 Transcriptional regulatory protein, C terminal CLSA_c20980 SM00387 Histidine kinase-like ATPases CLSA_c20980 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c20990 SM00382 ATPases associated with a variety of cellular activities CLSA_c21120 SM00382 ATPases associated with a variety of cellular activities CLSA_c21130 SM00382 ATPases associated with a variety of cellular activities CLSA_c21190 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c21250 SM00382 ATPases associated with a variety of cellular activities CLSA_c21260 SM00448 cheY-homologous receiver domain CLSA_c21260 SM00862 Transcriptional regulatory protein, C terminal CLSA_c21270 SM00387 Histidine kinase-like ATPases CLSA_c21270 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c21310 SM01207 CLSA_c21310 CLSA_c21400 SM00382 ATPases associated with a variety of cellular activities CLSA_c21450 SM00091 PAS domain CLSA_c21450 SM00267 diguanylate cyclase CLSA_c21450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c21480 SM01324 CLSA_c21480 CLSA_c21490 SM00248 ankyrin repeats CLSA_c21550 SM00028 Tetratricopeptide repeats CLSA_c21610 SM00382 ATPases associated with a variety of cellular activities CLSA_c21620 SM00382 ATPases associated with a variety of cellular activities CLSA_c21630 SM00267 diguanylate cyclase CLSA_c21680 SM00448 cheY-homologous receiver domain CLSA_c21680 SM00862 Transcriptional regulatory protein, C terminal CLSA_c21700 SM00387 Histidine kinase-like ATPases CLSA_c21700 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c21720 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c21750 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c21760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLSA_c21770 SM00226 Low molecular weight phosphatase family CLSA_c21790 SM00902 Iron hydrogenase small subunit CLSA_c21830 SM00091 PAS domain CLSA_c21830 SM00267 diguanylate cyclase CLSA_c21870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLSA_c21870 SM00267 diguanylate cyclase CLSA_c21890 SM00387 Histidine kinase-like ATPases CLSA_c21890 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c21890 SM00448 cheY-homologous receiver domain CLSA_c21910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLSA_c21910 SM00387 Histidine kinase-like ATPases CLSA_c21910 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c21910 SM00448 cheY-homologous receiver domain CLSA_c21920 SM00138 Methyltransferase, chemotaxis proteins CLSA_c21950 SM00479 CLSA_c21950 CLSA_c22010 SM00382 ATPases associated with a variety of cellular activities CLSA_c22020 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c22030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c22040 SM00387 Histidine kinase-like ATPases CLSA_c22040 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c22040 SM00448 cheY-homologous receiver domain CLSA_c22050 SM00448 cheY-homologous receiver domain CLSA_c22060 SM00641 Glycosyl hydrolases family 25 CLSA_c22070 SM00363 S4 RNA-binding domain CLSA_c22140 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c22140 SM01134 CLSA_c22140 CLSA_c22210 SM00890 Domain of unknown function CLSA_c22260 SM00382 ATPases associated with a variety of cellular activities CLSA_c22330 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c22370 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c22500 SM00853 MutL C terminal dimerisation domain CLSA_c22500 SM01340 CLSA_c22500 CLSA_c22560 SM00893 Electron transfer flavoprotein domain CLSA_c22570 SM00893 Electron transfer flavoprotein domain CLSA_c22640 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLSA_c22640 SM00534 ATPase domain of DNA mismatch repair MUTS family CLSA_c22750 SM00849 Metallo-beta-lactamase superfamily CLSA_c22780 SM00450 Rhodanese Homology Domain CLSA_c22800 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c22910 SM00635 Bacterial Ig-like domain 2 CLSA_c23170 SM00450 Rhodanese Homology Domain CLSA_c23210 SM00448 cheY-homologous receiver domain CLSA_c23220 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLSA_c23220 SM00091 PAS domain CLSA_c23220 SM00387 Histidine kinase-like ATPases CLSA_c23220 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c23220 SM00448 cheY-homologous receiver domain CLSA_c23250 SM00448 cheY-homologous receiver domain CLSA_c23260 SM00138 Methyltransferase, chemotaxis proteins CLSA_c23270 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c23280 SM00073 Histidine Phosphotransfer domain CLSA_c23280 SM00260 Two component signalling adaptor domain CLSA_c23280 SM00387 Histidine kinase-like ATPases CLSA_c23280 SM01231 CLSA_c23280 CLSA_c23290 SM00260 Two component signalling adaptor domain CLSA_c23300 SM00448 cheY-homologous receiver domain CLSA_c23310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c23310 SM00387 Histidine kinase-like ATPases CLSA_c23310 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c23320 SM00448 cheY-homologous receiver domain CLSA_c23320 SM00862 Transcriptional regulatory protein, C terminal CLSA_c23390 SM00387 Histidine kinase-like ATPases CLSA_c23390 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c23400 SM00448 cheY-homologous receiver domain CLSA_c23400 SM00862 Transcriptional regulatory protein, C terminal CLSA_c23450 SM00487 DEAD-like helicases superfamily CLSA_c23450 SM00490 helicase superfamily c-terminal domain CLSA_c23470 SM00382 ATPases associated with a variety of cellular activities CLSA_c23480 SM00028 Tetratricopeptide repeats CLSA_c23640 SM00487 DEAD-like helicases superfamily CLSA_c23640 SM00490 helicase superfamily c-terminal domain CLSA_c23660 SM00855 Phosphoglycerate mutase family CLSA_c23760 SM00902 Iron hydrogenase small subunit CLSA_c23950 SM00382 ATPases associated with a variety of cellular activities CLSA_c23990 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c23990 SM01134 CLSA_c23990 CLSA_c24010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c24010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c24030 SM00422 helix_turn_helix, mercury resistance CLSA_c24060 SM00903 Flavin reductase like domain CLSA_c24120 SM00382 ATPases associated with a variety of cellular activities CLSA_c24140 SM00641 Glycosyl hydrolases family 25 CLSA_c24150 SM00448 cheY-homologous receiver domain CLSA_c24160 SM00138 Methyltransferase, chemotaxis proteins CLSA_c24170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c24170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c24180 SM00260 Two component signalling adaptor domain CLSA_c24190 SM00073 Histidine Phosphotransfer domain CLSA_c24190 SM00260 Two component signalling adaptor domain CLSA_c24190 SM00387 Histidine kinase-like ATPases CLSA_c24190 SM01231 CLSA_c24190 CLSA_c24200 SM00448 cheY-homologous receiver domain CLSA_c24210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c24210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c24250 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c24270 SM00770 Zinc dependent phospholipase C (alpha toxin) CLSA_c24350 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c24430 SM00849 Metallo-beta-lactamase superfamily CLSA_c24470 SM00387 Histidine kinase-like ATPases CLSA_c24470 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c24480 SM00448 cheY-homologous receiver domain CLSA_c24480 SM00862 Transcriptional regulatory protein, C terminal CLSA_c24510 SM00382 ATPases associated with a variety of cellular activities CLSA_c24520 SM00382 ATPases associated with a variety of cellular activities CLSA_c24580 SM00387 Histidine kinase-like ATPases CLSA_c24580 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c24590 SM00448 cheY-homologous receiver domain CLSA_c24590 SM00862 Transcriptional regulatory protein, C terminal CLSA_c24630 SM00091 PAS domain CLSA_c24630 SM00267 diguanylate cyclase CLSA_c24630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c24670 SM00849 Metallo-beta-lactamase superfamily CLSA_c24720 SM00850 LytTr DNA-binding domain CLSA_c24730 SM01007 Class II Aldolase and Adducin N-terminal domain CLSA_c24740 SM00882 Coenzyme A transferase CLSA_c24860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c24860 SM00387 Histidine kinase-like ATPases CLSA_c24860 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c24890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c24960 SM00487 DEAD-like helicases superfamily CLSA_c25070 SM01144 CLSA_c25070 CLSA_c25090 SM00422 helix_turn_helix, mercury resistance CLSA_c25090 SM00857 Resolvase, N terminal domain CLSA_c25130 SM00876 Biotin and Thiamin Synthesis associated domain CLSA_c25290 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c25290 SM00876 Biotin and Thiamin Synthesis associated domain CLSA_c25310 SM00855 Phosphoglycerate mutase family CLSA_c25350 SM01130 CLSA_c25350 CLSA_c25370 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c25410 SM00421 helix_turn_helix, Lux Regulon CLSA_c25440 SM00382 ATPases associated with a variety of cellular activities CLSA_c25460 SM00220 Serine/Threonine protein kinases, catalytic domain CLSA_c25460 SM00740 CLSA_c25460 CLSA_c25580 SM01266 CLSA_c25580 CLSA_c25610 SM00825 Beta-ketoacyl synthase CLSA_c25620 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c25620 SM00871 Bacterial transcription activator, effector binding domain CLSA_c25660 SM01230 CLSA_c25660 CLSA_c25710 SM01117 CLSA_c25710 CLSA_c25730 SM00387 Histidine kinase-like ATPases CLSA_c25730 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c25740 SM00641 Glycosyl hydrolases family 25 CLSA_c25790 SM01400 CLSA_c25790 CLSA_c25800 SM00490 helicase superfamily c-terminal domain CLSA_c25840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c25880 SM00382 ATPases associated with a variety of cellular activities CLSA_c25940 SM00479 CLSA_c25940 CLSA_c25940 SM00487 DEAD-like helicases superfamily CLSA_c25940 SM00491 CLSA_c25940 CLSA_c25990 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLSA_c25990 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLSA_c25990 SM00493 CLSA_c25990 CLSA_c26020 SM00899 CLSA_c26020 CLSA_c26040 SM00421 helix_turn_helix, Lux Regulon CLSA_c26110 SM00357 Cold shock protein domain CLSA_c26210 SM00363 S4 RNA-binding domain CLSA_c26230 SM00563 Phosphate acyltransferases CLSA_c26360 SM00936 Penicillin-binding protein 5, C-terminal domain CLSA_c26400 SM00382 ATPases associated with a variety of cellular activities CLSA_c26420 SM00852 Probable molybdopterin binding domain CLSA_c26440 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c26470 SM00852 Probable molybdopterin binding domain CLSA_c26480 SM00852 Probable molybdopterin binding domain CLSA_c26530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLSA_c26570 SM00100 Cyclic nucleotide-monophosphate binding domain CLSA_c26570 SM00419 helix_turn_helix, cAMP Regulatory protein CLSA_c26780 SM00448 cheY-homologous receiver domain CLSA_c26790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLSA_c26830 SM00363 S4 RNA-binding domain CLSA_c26840 SM00861 Transketolase, pyrimidine binding domain CLSA_c26980 SM00382 ATPases associated with a variety of cellular activities CLSA_c27000 SM00841 Elongation factor P, C-terminal CLSA_c27000 SM01185 CLSA_c27000 CLSA_c27110 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c27170 SM00981 CLSA_c27170 CLSA_c27190 SM00363 S4 RNA-binding domain CLSA_c27210 SM00363 S4 RNA-binding domain CLSA_c27330 SM00740 CLSA_c27330 CLSA_c27370 SM00873 B3/4 domain CLSA_c27370 SM00874 tRNA synthetase B5 domain CLSA_c27370 SM00896 Ferredoxin-fold anticodon binding domain CLSA_c27390 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLSA_c27500 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLSA_c27510 SM01130 CLSA_c27510 CLSA_c27620 SM00910 CLSA_c27620 CLSA_c27700 SM01007 Class II Aldolase and Adducin N-terminal domain CLSA_c27710 SM00882 Coenzyme A transferase CLSA_c27850 SM00028 Tetratricopeptide repeats CLSA_c27860 SM00460 Transglutaminase/protease-like homologues CLSA_c27890 SM00448 cheY-homologous receiver domain CLSA_c27890 SM00862 Transcriptional regulatory protein, C terminal CLSA_c27900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c27900 SM00387 Histidine kinase-like ATPases CLSA_c27900 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c27910 SM00870 CLSA_c27910 CLSA_c28090 SM00363 S4 RNA-binding domain CLSA_c28100 SM00642 Alpha-amylase domain CLSA_c28150 SM00382 ATPases associated with a variety of cellular activities CLSA_c28190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c28240 SM01058 CarD-like/TRCF domain CLSA_c28330 SM00387 Histidine kinase-like ATPases CLSA_c28330 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c28340 SM00897 FIST N domain CLSA_c28340 SM01204 CLSA_c28340 CLSA_c28370 SM00382 ATPases associated with a variety of cellular activities CLSA_c28660 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c28670 SM00849 Metallo-beta-lactamase superfamily CLSA_c28690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c28690 SM00954 Region found in RelA / SpoT proteins CLSA_c28750 SM01323 CLSA_c28750 CLSA_c28780 SM00382 ATPases associated with a variety of cellular activities CLSA_c28840 SM00919 Malic enzyme, NAD binding domain CLSA_c28840 SM01274 CLSA_c28840 CLSA_c28900 SM00014 Acid phosphatase homologues CLSA_c28910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c28910 SM00387 Histidine kinase-like ATPases CLSA_c28910 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c28920 SM00448 cheY-homologous receiver domain CLSA_c28920 SM00862 Transcriptional regulatory protein, C terminal CLSA_c29340 SM00487 DEAD-like helicases superfamily CLSA_c29550 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c29560 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c29610 SM01040 BRO family, N-terminal domain CLSA_c29680 SM00477 DNA/RNA non-specific endonuclease CLSA_c29680 SM00892 DNA/RNA non-specific endonuclease CLSA_c29720 SM00635 Bacterial Ig-like domain 2 CLSA_c29820 SM00257 Lysin motif CLSA_c29990 SM00857 Resolvase, N terminal domain CLSA_c30060 SM00400 zinc finger CLSA_c30160 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c30250 SM00966 SpoVT / AbrB like domain CLSA_c30260 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c30270 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c30300 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c30310 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c30440 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c30460 SM01091 Transporter associated domain CLSA_c30550 SM00506 Appr-1"-p processing enzyme CLSA_c30580 SM00271 DnaJ molecular chaperone homology domain CLSA_c30630 SM00481 DNA polymerase alpha chain like domain CLSA_c30720 SM01018 B12 binding domain CLSA_c30850 SM00878 Biotin carboxylase C-terminal domain CLSA_c30870 SM00797 Allophanate hydrolase subunit 2 CLSA_c30880 SM00796 Allophanate hydrolase subunit 1 CLSA_c30890 SM01005 Alanine racemase, C-terminal domain CLSA_c30950 SM00344 helix_turn_helix ASNC type CLSA_c30960 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c30970 SM01301 CLSA_c30970 CLSA_c31040 SM00363 S4 RNA-binding domain CLSA_c31060 SM00842 Cell division protein FtsA CLSA_c31200 SM00382 ATPases associated with a variety of cellular activities CLSA_c31200 SM00464 Found in ATP-dependent protease La (LON) CLSA_c31210 SM00382 ATPases associated with a variety of cellular activities CLSA_c31220 SM00382 ATPases associated with a variety of cellular activities CLSA_c31220 SM00994 ClpX C4-type zinc finger CLSA_c31220 SM01086 C-terminal, D2-small domain, of ClpB protein CLSA_c31380 SM00981 CLSA_c31380 CLSA_c31400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c31430 SM00954 Region found in RelA / SpoT proteins CLSA_c31480 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c31590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c31590 SM00387 Histidine kinase-like ATPases CLSA_c31590 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c31600 SM00448 cheY-homologous receiver domain CLSA_c31600 SM00862 Transcriptional regulatory protein, C terminal CLSA_c31660 SM01004 Delta-aminolevulinic acid dehydratase CLSA_c31900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c32000 SM00855 Phosphoglycerate mutase family CLSA_c32070 SM00382 ATPases associated with a variety of cellular activities CLSA_c32130 SM00047 Lysozyme subfamily 2 CLSA_c32180 SM00448 cheY-homologous receiver domain CLSA_c32190 SM00387 Histidine kinase-like ATPases CLSA_c32220 SM00919 Malic enzyme, NAD binding domain CLSA_c32220 SM01274 CLSA_c32220 CLSA_c32310 SM01038 Beta galactosidase small chain CLSA_c32320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c32330 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c32350 SM00354 helix_turn _helix lactose operon repressor CLSA_c32370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c32370 SM00387 Histidine kinase-like ATPases CLSA_c32370 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c32380 SM00448 cheY-homologous receiver domain CLSA_c32380 SM00862 Transcriptional regulatory protein, C terminal CLSA_c32390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c32530 SM00267 diguanylate cyclase CLSA_c32560 SM00813 Alpha-L-arabinofuranosidase C-terminus CLSA_c32650 SM00387 Histidine kinase-like ATPases CLSA_c32650 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c32660 SM00091 PAS domain CLSA_c32660 SM00387 Histidine kinase-like ATPases CLSA_c32660 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c32710 SM00382 ATPases associated with a variety of cellular activities CLSA_c32770 SM00382 ATPases associated with a variety of cellular activities CLSA_c32870 SM00448 cheY-homologous receiver domain CLSA_c32870 SM00850 LytTr DNA-binding domain CLSA_c32910 SM00387 Histidine kinase-like ATPases CLSA_c32940 SM00635 Bacterial Ig-like domain 2 CLSA_c32970 SM00861 Transketolase, pyrimidine binding domain CLSA_c33150 SM00014 Acid phosphatase homologues CLSA_c33160 SM00529 Helix-turn-helix diphteria tox regulatory element CLSA_c33190 SM01091 Transporter associated domain CLSA_c33200 SM00938 Nitrogen regulatory protein P-II CLSA_c33210 SM00382 ATPases associated with a variety of cellular activities CLSA_c33220 SM00382 ATPases associated with a variety of cellular activities CLSA_c33260 SM00382 ATPases associated with a variety of cellular activities CLSA_c33270 SM00382 ATPases associated with a variety of cellular activities CLSA_c33450 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c33480 SM00382 ATPases associated with a variety of cellular activities CLSA_c33620 SM00882 Coenzyme A transferase CLSA_c33630 SM00882 Coenzyme A transferase CLSA_c33680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c33680 SM00387 Histidine kinase-like ATPases CLSA_c33680 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c33690 SM00448 cheY-homologous receiver domain CLSA_c33690 SM00862 Transcriptional regulatory protein, C terminal CLSA_c33730 SM01078 CLSA_c33730 CLSA_c33780 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLSA_c33780 SM00091 PAS domain CLSA_c33780 SM00267 diguanylate cyclase CLSA_c33780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c33790 SM00100 Cyclic nucleotide-monophosphate binding domain CLSA_c33790 SM00419 helix_turn_helix, cAMP Regulatory protein CLSA_c33820 SM01059 Chloramphenicol acetyltransferase CLSA_c33860 SM00382 ATPases associated with a variety of cellular activities CLSA_c33870 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c33920 SM00831 Cation transporter/ATPase, N-terminus CLSA_c34020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c34090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c34090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c34260 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c34290 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c34320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c34450 SM00422 helix_turn_helix, mercury resistance CLSA_c34470 SM00855 Phosphoglycerate mutase family CLSA_c34480 SM00382 ATPases associated with a variety of cellular activities CLSA_c34610 SM00849 Metallo-beta-lactamase superfamily CLSA_c34720 SM00460 Transglutaminase/protease-like homologues CLSA_c34740 SM00460 Transglutaminase/protease-like homologues CLSA_c34780 SM00919 Malic enzyme, NAD binding domain CLSA_c34780 SM01274 CLSA_c34780 CLSA_c34880 SM00764 Citrate lyase ligase C-terminal domain CLSA_c34890 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c34890 SM00895 CLSA_c34890 CLSA_c34990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c35070 SM00460 Transglutaminase/protease-like homologues CLSA_c35080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c35080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c35310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c35310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c35330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c35450 SM00287 Bacterial SH3 domain homologues CLSA_c35600 SM00465 GIY-YIG type nucleases (URI domain) CLSA_c35720 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c35730 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c35780 SM00382 ATPases associated with a variety of cellular activities CLSA_c35810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c35840 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c35840 SM00871 Bacterial transcription activator, effector binding domain CLSA_c35860 SM00422 helix_turn_helix, mercury resistance CLSA_c35880 SM00422 helix_turn_helix, mercury resistance CLSA_c35900 SM00645 Papain family cysteine protease CLSA_c35910 SM00656 CLSA_c35910 CLSA_c35930 SM00344 helix_turn_helix ASNC type CLSA_c35960 SM00798 AICARFT/IMPCHase bienzyme CLSA_c36050 SM00448 cheY-homologous receiver domain CLSA_c36050 SM00862 Transcriptional regulatory protein, C terminal CLSA_c36060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c36060 SM00387 Histidine kinase-like ATPases CLSA_c36060 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c36070 SM00849 Metallo-beta-lactamase superfamily CLSA_c36090 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c36130 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c36160 SM00903 Flavin reductase like domain CLSA_c36300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c36300 SM00387 Histidine kinase-like ATPases CLSA_c36300 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c36310 SM00448 cheY-homologous receiver domain CLSA_c36310 SM00862 Transcriptional regulatory protein, C terminal CLSA_c36360 SM00534 ATPase domain of DNA mismatch repair MUTS family CLSA_c36390 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c36390 SM00448 cheY-homologous receiver domain CLSA_c36400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c36400 SM00387 Histidine kinase-like ATPases CLSA_c36450 SM00382 ATPases associated with a variety of cellular activities CLSA_c36470 SM00365 Leucine-rich repeat, SDS22-like subfamily CLSA_c36470 SM00369 Leucine-rich repeats, typical (most populated) subfamily CLSA_c36490 SM00860 SMI1 / KNR4 family CLSA_c36730 SM00382 ATPases associated with a variety of cellular activities CLSA_c36750 SM01217 CLSA_c36750 CLSA_c36760 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c36770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c36770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c36780 SM00342 helix_turn_helix, arabinose operon control protein CLSA_c36780 SM00448 cheY-homologous receiver domain CLSA_c36790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLSA_c36790 SM00091 PAS domain CLSA_c36790 SM00387 Histidine kinase-like ATPases CLSA_c36790 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c36810 SM00387 Histidine kinase-like ATPases CLSA_c36810 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c36880 SM00382 ATPases associated with a variety of cellular activities CLSA_c36890 SM00382 ATPases associated with a variety of cellular activities CLSA_c36910 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c36990 SM00382 ATPases associated with a variety of cellular activities CLSA_c37020 SM00052 Putative diguanylate phosphodiesterase CLSA_c37020 SM00267 diguanylate cyclase CLSA_c37060 SM00382 ATPases associated with a variety of cellular activities CLSA_c37220 SM00287 Bacterial SH3 domain homologues CLSA_c37280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c37290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c37300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c37300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c37420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c37440 SM00028 Tetratricopeptide repeats CLSA_c37440 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLSA_c37440 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLSA_c37440 SM00091 PAS domain CLSA_c37440 SM00387 Histidine kinase-like ATPases CLSA_c37440 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c37450 SM00636 CLSA_c37450 CLSA_c37500 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c37520 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c37560 SM00448 cheY-homologous receiver domain CLSA_c37560 SM00862 Transcriptional regulatory protein, C terminal CLSA_c37570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c37570 SM00387 Histidine kinase-like ATPases CLSA_c37570 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c37580 SM01301 CLSA_c37580 CLSA_c37630 SM00849 Metallo-beta-lactamase superfamily CLSA_c37650 SM00823 Phosphopantetheine attachment site CLSA_c37670 SM00479 CLSA_c37670 CLSA_c37670 SM00481 DNA polymerase alpha chain like domain CLSA_c37680 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c37840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c37860 SM00100 Cyclic nucleotide-monophosphate binding domain CLSA_c37860 SM00419 helix_turn_helix, cAMP Regulatory protein CLSA_c37890 SM00849 Metallo-beta-lactamase superfamily CLSA_c37960 SM00849 Metallo-beta-lactamase superfamily CLSA_c37970 SM00100 Cyclic nucleotide-monophosphate binding domain CLSA_c37970 SM00419 helix_turn_helix, cAMP Regulatory protein CLSA_c38020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c38110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c38170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c38170 SM00387 Histidine kinase-like ATPases CLSA_c38170 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c38280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c38320 SM00656 CLSA_c38320 CLSA_c38330 SM00155 Phospholipase D. Active site motifs. CLSA_c38340 SM00529 Helix-turn-helix diphteria tox regulatory element CLSA_c38360 SM00861 Transketolase, pyrimidine binding domain CLSA_c38390 SM01007 Class II Aldolase and Adducin N-terminal domain CLSA_c38460 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c38460 SM01134 CLSA_c38460 CLSA_c38470 SM00849 Metallo-beta-lactamase superfamily CLSA_c38500 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLSA_c38510 SM01005 Alanine racemase, C-terminal domain CLSA_c38550 SM00642 Alpha-amylase domain CLSA_c38560 SM00642 Alpha-amylase domain CLSA_c38630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c38700 SM00382 ATPases associated with a variety of cellular activities CLSA_c38720 SM00354 helix_turn _helix lactose operon repressor CLSA_c38740 SM00344 helix_turn_helix ASNC type CLSA_c38760 SM00382 ATPases associated with a variety of cellular activities CLSA_c38760 SM01086 C-terminal, D2-small domain, of ClpB protein CLSA_c38830 SM00421 helix_turn_helix, Lux Regulon CLSA_c38850 SM00091 PAS domain CLSA_c38850 SM00267 diguanylate cyclase CLSA_c38850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLSA_c38870 SM00382 ATPases associated with a variety of cellular activities CLSA_c38890 SM00387 Histidine kinase-like ATPases CLSA_c38900 SM00448 cheY-homologous receiver domain CLSA_c38900 SM00862 Transcriptional regulatory protein, C terminal CLSA_c38910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c38960 SM00382 ATPases associated with a variety of cellular activities CLSA_c39020 SM00899 CLSA_c39020 CLSA_c39030 SM00899 CLSA_c39030 CLSA_c39110 SM00831 Cation transporter/ATPase, N-terminus CLSA_c39120 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c39120 SM01131 CLSA_c39120 CLSA_c39200 SM00382 ATPases associated with a variety of cellular activities CLSA_c39200 SM00962 SRP54-type protein, GTPase domain CLSA_c39330 SM00382 ATPases associated with a variety of cellular activities CLSA_c39490 SM00028 Tetratricopeptide repeats CLSA_c39500 SM00858 CLSA_c39500 CLSA_c39770 SM00260 Two component signalling adaptor domain CLSA_c39780 SM00448 cheY-homologous receiver domain CLSA_c39800 SM00073 Histidine Phosphotransfer domain CLSA_c39800 SM00260 Two component signalling adaptor domain CLSA_c39800 SM00387 Histidine kinase-like ATPases CLSA_c39800 SM01231 CLSA_c39800 CLSA_c39810 SM00138 Methyltransferase, chemotaxis proteins CLSA_c39820 SM00448 cheY-homologous receiver domain CLSA_c39840 SM00260 Two component signalling adaptor domain CLSA_c39850 SM01245 CLSA_c39850 CLSA_c39900 SM00890 Domain of unknown function CLSA_c39950 SM00434 DNA Topoisomerase IV CLSA_c39960 SM00387 Histidine kinase-like ATPases CLSA_c39960 SM00433 TopoisomeraseII CLSA_c40030 SM00382 ATPases associated with a variety of cellular activities CLSA_c40110 SM00382 ATPases associated with a variety of cellular activities CLSA_c40160 SM00052 Putative diguanylate phosphodiesterase CLSA_c40160 SM00267 diguanylate cyclase CLSA_c40220 SM00382 ATPases associated with a variety of cellular activities CLSA_c40220 SM01086 C-terminal, D2-small domain, of ClpB protein CLSA_c40230 SM00028 Tetratricopeptide repeats CLSA_c40240 SM00028 Tetratricopeptide repeats CLSA_c40240 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c40330 SM00382 ATPases associated with a variety of cellular activities CLSA_c40330 SM00930 CLSA_c40330 CLSA_c40350 SM00316 Ribosomal protein S1-like RNA-binding domain CLSA_c40350 SM00357 Cold shock protein domain CLSA_c40350 SM00955 CLSA_c40350 CLSA_c40370 SM01192 CLSA_c40370 CLSA_c40370 SM01193 CLSA_c40370 CLSA_c40430 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLSA_c40480 SM01208 CLSA_c40480 CLSA_c40520 SM00478 endonuclease III CLSA_c40530 SM00563 Phosphate acyltransferases CLSA_c40560 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c40560 SM00924 MgtE intracellular N domain CLSA_c40570 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c40600 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLSA_c40670 SM00763 PrkA AAA domain CLSA_c40700 SM00448 cheY-homologous receiver domain CLSA_c40720 SM00382 ATPases associated with a variety of cellular activities CLSA_c40760 SM00829 Enoylreductase CLSA_c40770 SM00091 PAS domain CLSA_c40770 SM00382 ATPases associated with a variety of cellular activities CLSA_c40810 SM00382 ATPases associated with a variety of cellular activities CLSA_c40820 SM00387 Histidine kinase-like ATPases CLSA_c40820 SM00388 His Kinase A (phosphoacceptor) domain CLSA_c40830 SM00448 cheY-homologous receiver domain CLSA_c40830 SM00862 Transcriptional regulatory protein, C terminal CLSA_c40840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c40850 SM00052 Putative diguanylate phosphodiesterase CLSA_c40880 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c40900 SM00882 Coenzyme A transferase CLSA_c40930 SM00060 Fibronectin type 3 domain CLSA_c40930 SM00409 Immunoglobulin CLSA_c40930 SM00635 Bacterial Ig-like domain 2 CLSA_c40940 SM00448 cheY-homologous receiver domain CLSA_c40940 SM01043 Bacterial transcriptional activator domain CLSA_c40950 SM00387 Histidine kinase-like ATPases CLSA_c40990 SM00382 ATPases associated with a variety of cellular activities CLSA_c41010 SM00954 Region found in RelA / SpoT proteins CLSA_c41030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c41130 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c41130 SM01134 CLSA_c41130 CLSA_c41170 SM00363 S4 RNA-binding domain CLSA_c41200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLSA_c41200 SM00267 diguanylate cyclase CLSA_c41330 SM00646 CLSA_c41330 CLSA_c41340 SM01324 CLSA_c41340 CLSA_c41390 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. CLSA_c41420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLSA_c41420 SM00267 diguanylate cyclase CLSA_c41420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c41520 SM00646 CLSA_c41520 CLSA_c41530 SM00646 CLSA_c41530 CLSA_c41560 SM00632 CLSA_c41560 CLSA_c41560 SM00642 Alpha-amylase domain CLSA_c41560 SM01066 Carbohydrate binding domain CLSA_c41640 SM00028 Tetratricopeptide repeats CLSA_c41650 SM00984 UDP binding domain CLSA_c41860 SM00635 Bacterial Ig-like domain 2 CLSA_c41870 SM00635 Bacterial Ig-like domain 2 CLSA_c42030 SM00382 ATPases associated with a variety of cellular activities CLSA_c42150 SM00382 ATPases associated with a variety of cellular activities CLSA_c42480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c42500 SM00849 Metallo-beta-lactamase superfamily CLSA_c42510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c42510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c42530 SM00420 helix_turn_helix, Deoxyribose operon repressor CLSA_c42530 SM01134 CLSA_c42530 CLSA_c42540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c42540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLSA_c42550 SM01068 Putative carbohydrate binding domain CLSA_c42580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c42590 SM01043 Bacterial transcriptional activator domain CLSA_c42600 SM01130 CLSA_c42600 CLSA_c42630 SM00382 ATPases associated with a variety of cellular activities CLSA_c42650 SM00062 Bacterial periplasmic substrate-binding proteins CLSA_c42650 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CLSA_c42680 SM00382 ATPases associated with a variety of cellular activities CLSA_c42750 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLSA_c42770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c42770 SM01049 CLSA_c42770 CLSA_c42920 SM00481 DNA polymerase alpha chain like domain CLSA_c42930 SM00886 Stress responsive A/B Barrel Domain CLSA_c42990 SM00465 GIY-YIG type nucleases (URI domain) CLSA_c43020 SM00240 Forkhead associated domain CLSA_c43030 SM00382 ATPases associated with a variety of cellular activities CLSA_c43040 SM00487 DEAD-like helicases superfamily CLSA_c43040 SM00490 helicase superfamily c-terminal domain CLSA_c43070 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLSA_c43070 SM00245 tail specific protease CLSA_c43090 SM00382 ATPases associated with a variety of cellular activities CLSA_c43110 SM00861 Transketolase, pyrimidine binding domain CLSA_c43270 SM00984 UDP binding domain CLSA_c43300 SM00488 CLSA_c43300 CLSA_c43300 SM00491 CLSA_c43300 CLSA_c43320 SM00966 SpoVT / AbrB like domain CLSA_c43400 SM00986 Uracil DNA glycosylase superfamily CLSA_c43400 SM00987 UreE urease accessory protein, C-terminal domain CLSA_c43470 SM00852 Probable molybdopterin binding domain CLSA_c43520 SM00838 Elongation factor G C-terminus CLSA_c43520 SM00889 Elongation factor G, domain IV CLSA_c43790 SM00642 Alpha-amylase domain CLSA_c43820 SM00642 Alpha-amylase domain CLSA_c43890 SM01061 CAT RNA binding domain CLSA_c43920 SM00729 Elongator protein 3, MiaB family, Radical SAM CLSA_c43920 SM00876 Biotin and Thiamin Synthesis associated domain CLSA_c43990 SM00382 ATPases associated with a variety of cellular activities CLSA_c44000 SM00382 ATPases associated with a variety of cellular activities CLSA_c44050 SM00287 Bacterial SH3 domain homologues CLSA_c44080 SM00493 CLSA_c44080 CLSA_c44100 SM00382 ATPases associated with a variety of cellular activities CLSA_c44190 SM00116 Domain in cystathionine beta-synthase and other proteins. CLSA_c44190 SM00924 MgtE intracellular N domain CLSA_c44250 SM01091 Transporter associated domain CLSA_c44280 SM00640 Glycosyl hydrolases family 32 CLSA_c44290 SM00354 helix_turn _helix lactose operon repressor CLSA_c44310 SM00530 Helix-turn-helix XRE-family like proteins CLSA_c44320 SM00382 ATPases associated with a variety of cellular activities CLSA_c44330 SM00382 ATPases associated with a variety of cellular activities CLSA_c44340 SM00347 helix_turn_helix multiple antibiotic resistance protein CLSA_c44430 SM00448 cheY-homologous receiver domain CLSA_c44430 SM00850 LytTr DNA-binding domain CLSA_c44460 SM00793 Accessory gene regulator B CLSA_c44480 SM00382 ATPases associated with a variety of cellular activities CLSA_c44510 SM00382 ATPases associated with a variety of cellular activities CLSA_c44530 SM01260 CLSA_c44530 CLSA_c44650 SM00563 Phosphate acyltransferases CLSA_c44660 SM00487 DEAD-like helicases superfamily CLSA_c44660 SM00490 helicase superfamily c-terminal domain CLSA_c44680 SM00382 ATPases associated with a variety of cellular activities CLSA_c44720 SM00938 Nitrogen regulatory protein P-II CLSA_c44780 SM01130 CLSA_c44780 CLSA_c44990 SM00646 CLSA_c44990 CLSA_c45070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLSA_c45090 SM00849 Metallo-beta-lactamase superfamily CLSA_c45140 SM00849 Metallo-beta-lactamase superfamily CLSA_c45250 SM00788 Adenylosuccinate synthetase CLSA_c45270 SM00382 ATPases associated with a variety of cellular activities CLSA_c45280 SM00382 ATPases associated with a variety of cellular activities CLSA_c45420 SM00470 ParB-like nuclease domain CLSA_c45440 SM00470 ParB-like nuclease domain CLSA_c45460 SM01228 CLSA_c45460 CLSA_c45480 SM00393 Putative single-stranded nucleic acids-binding domain CLSA_c45480 SM01245 CLSA_c45480 CLSA_c45500 SM01234 CLSA_c45500