locus-tag class description CpCap1W_0001 PF08299 Bacterial dnaA protein helix-turn-helix CpCap1W_0001 PF00308 Bacterial dnaA protein CpCap1W_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain CpCap1W_0002 PF02767 DNA polymerase III beta subunit, central domain CpCap1W_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain CpCap1W_0003 PF02463 RecF/RecN/SMC N terminal domain CpCap1W_0004 PF05258 Dna[CI] antecedent, DciA CpCap1W_0005 PF00204 DNA gyrase B CpCap1W_0005 PF00986 DNA gyrase B subunit, carboxyl terminus CpCap1W_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0005 PF01751 Toprim domain CpCap1W_0009 PF03989 DNA gyrase C-terminal domain, beta-propeller CpCap1W_0009 PF00521 DNA gyrase/topoisomerase IV, subunit A CpCap1W_0018 PF02653 Branched-chain amino acid transport system / permease component CpCap1W_0019 PF00005 ABC transporter CpCap1W_0021 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CpCap1W_0032 PF00005 ABC transporter CpCap1W_0033 PF01032 FecCD transport family CpCap1W_0034 PF01032 FecCD transport family CpCap1W_0035 PF01497 Periplasmic binding protein CpCap1W_0036 PF06781 Cell division protein CrgA CpCap1W_0037 PF03793 PASTA domain CpCap1W_0037 PF00069 Protein kinase domain CpCap1W_0038 PF00069 Protein kinase domain CpCap1W_0039 PF00905 Penicillin binding protein transpeptidase domain CpCap1W_0040 PF01098 Cell cycle protein CpCap1W_0043 PF12401 Protein of unknown function (DUF2662) CpCap1W_0043 PF00498 FHA domain CpCap1W_0043 PF00498 FHA domain CpCap1W_0043 PF12401 Protein of unknown function (DUF2662) CpCap1W_0049 PF00005 ABC transporter CpCap1W_0050 PF01032 FecCD transport family CpCap1W_0051 PF03448 MgtE intracellular N domain CpCap1W_0051 PF01769 Divalent cation transporter CpCap1W_0051 PF00571 CBS domain CpCap1W_0053 PF16657 Maltogenic Amylase, C-terminal domain CpCap1W_0053 PF00128 Alpha amylase, catalytic domain CpCap1W_0058 PF04542 Sigma-70 region 2 CpCap1W_0058 PF04545 Sigma-70, region 4 CpCap1W_0061 PF17991 Thioredoxin like C-terminal domain CpCap1W_0061 PF00578 AhpC/TSA family CpCap1W_0061 PF02683 Cytochrome C biogenesis protein transmembrane region CpCap1W_0063 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0064 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0065 PF00005 ABC transporter CpCap1W_0065 PF00571 CBS domain CpCap1W_0066 PF14013 MT0933-like antitoxin protein CpCap1W_0067 PF01546 Peptidase family M20/M25/M40 CpCap1W_0067 PF07687 Peptidase dimerisation domain CpCap1W_0068 PF06968 Biotin and Thiamin Synthesis associated domain CpCap1W_0068 PF04055 Radical SAM superfamily CpCap1W_0071 PF01048 Phosphorylase superfamily CpCap1W_0071 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CpCap1W_0073 PF01183 Glycosyl hydrolases family 25 CpCap1W_0073 PF01471 Putative peptidoglycan binding domain CpCap1W_0074 PF01658 Myo-inositol-1-phosphate synthase CpCap1W_0078 PF00132 Bacterial transferase hexapeptide (six repeats) CpCap1W_0081 PF03641 Possible lysine decarboxylase CpCap1W_0083 PF01047 MarR family CpCap1W_0086 PF05145 Transition state regulatory protein AbrB CpCap1W_0088 PF01925 Sulfite exporter TauE/SafE CpCap1W_0089 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CpCap1W_0091 PF00270 DEAD/DEAH box helicase CpCap1W_0091 PF04408 Helicase associated domain (HA2) CpCap1W_0091 PF00271 Helicase conserved C-terminal domain CpCap1W_0091 PF08482 ATP-dependent helicase C-terminal CpCap1W_0093 PF13532 2OG-Fe(II) oxygenase superfamily CpCap1W_0094 PF03352 Methyladenine glycosylase CpCap1W_0094 PF13302 Acetyltransferase (GNAT) domain CpCap1W_0094 PF00958 GMP synthase C terminal domain CpCap1W_0094 PF00117 Glutamine amidotransferase class-I CpCap1W_0094 PF13673 Acetyltransferase (GNAT) domain CpCap1W_0095 PF00106 short chain dehydrogenase CpCap1W_0096 PF01906 Putative heavy-metal-binding CpCap1W_0102 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CpCap1W_0102 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CpCap1W_0103 PF00230 Major intrinsic protein CpCap1W_0105 PF01431 Peptidase family M13 CpCap1W_0105 PF05649 Peptidase family M13 CpCap1W_0109 PF14896 EmbC C-terminal domain CpCap1W_0109 PF04602 Mycobacterial cell wall arabinan synthesis protein CpCap1W_0109 PF17689 Arabinosyltransferase concanavalin like domain CpCap1W_0110 PF12249 Arabinofuranosyltransferase A C terminal CpCap1W_0110 PF12250 Arabinofuranosyltransferase N terminal CpCap1W_0111 PF00106 short chain dehydrogenase CpCap1W_0112 PF04030 D-arabinono-1,4-lactone oxidase CpCap1W_0112 PF01565 FAD binding domain CpCap1W_0117 PF04138 GtrA-like protein CpCap1W_0120 PF01297 Zinc-uptake complex component A periplasmic CpCap1W_0121 PF00005 ABC transporter CpCap1W_0122 PF00950 ABC 3 transport family CpCap1W_0123 PF00950 ABC 3 transport family CpCap1W_0124 PF01297 Zinc-uptake complex component A periplasmic CpCap1W_0126 PF00005 ABC transporter CpCap1W_0127 PF01061 ABC-2 type transporter CpCap1W_0128 PF00266 Aminotransferase class-V CpCap1W_0129 PF00107 Zinc-binding dehydrogenase CpCap1W_0129 PF08240 Alcohol dehydrogenase GroES-like domain CpCap1W_0131 PF00155 Aminotransferase class I and II CpCap1W_0134 PF00939 Sodium:sulfate symporter transmembrane region CpCap1W_0135 PF00874 PRD domain CpCap1W_0135 PF03123 CAT RNA binding domain CpCap1W_0138 PF00115 Cytochrome C and Quinol oxidase polypeptide I CpCap1W_0141 PF00392 Bacterial regulatory proteins, gntR family CpCap1W_0142 PF01680 SOR/SNZ family CpCap1W_0143 PF01174 SNO glutamine amidotransferase family CpCap1W_0144 PF02153 Prephenate dehydrogenase CpCap1W_0146 PF14437 MafB19-like deaminase CpCap1W_0148 PF03176 MMPL family CpCap1W_0149 PF01702 Queuine tRNA-ribosyltransferase CpCap1W_0150 PF00749 tRNA synthetases class I (E and Q), catalytic domain CpCap1W_0151 PF02447 GntP family permease CpCap1W_0152 PF01202 Shikimate kinase CpCap1W_0153 PF08240 Alcohol dehydrogenase GroES-like domain CpCap1W_0153 PF00107 Zinc-binding dehydrogenase CpCap1W_0157 PF12897 Alanine-glyoxylate amino-transferase CpCap1W_0159 PF12169 DNA polymerase III subunits gamma and tau domain III CpCap1W_0160 PF02575 YbaB/EbfC DNA-binding family CpCap1W_0161 PF02132 RecR protein CpCap1W_0161 PF13662 Toprim domain CpCap1W_0162 PF02447 GntP family permease CpCap1W_0163 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CpCap1W_0163 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CpCap1W_0165 PF07729 FCD domain CpCap1W_0165 PF00392 Bacterial regulatory proteins, gntR family CpCap1W_0166 PF01557 Fumarylacetoacetate (FAA) hydrolase family CpCap1W_0169 PF07685 CobB/CobQ-like glutamine amidotransferase domain CpCap1W_0170 PF08245 Mur ligase middle domain CpCap1W_0170 PF02875 Mur ligase family, glutamate ligase domain CpCap1W_0173 PF08502 LeuA allosteric (dimerisation) domain CpCap1W_0173 PF00682 HMGL-like CpCap1W_0174 PF04198 Putative sugar-binding domain CpCap1W_0175 PF01048 Phosphorylase superfamily CpCap1W_0176 PF07690 Major Facilitator Superfamily CpCap1W_0177 PF01791 DeoC/LacD family aldolase CpCap1W_0178 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpCap1W_0178 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpCap1W_0178 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpCap1W_0178 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpCap1W_0180 PF17802 Prealbumin-like fold domain CpCap1W_0180 PF08341 Thioester domain CpCap1W_0181 PF17210 SdrD B-like domain CpCap1W_0181 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CpCap1W_0181 PF04650 YSIRK type signal peptide CpCap1W_0181 PF17961 Bacterial Ig domain CpCap1W_0181 PF00746 LPXTG cell wall anchor motif CpCap1W_0182 PF00746 LPXTG cell wall anchor motif CpCap1W_0182 PF04650 YSIRK type signal peptide CpCap1W_0182 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CpCap1W_0182 PF17210 SdrD B-like domain CpCap1W_0182 PF17961 Bacterial Ig domain CpCap1W_0185 PF00696 Amino acid kinase family CpCap1W_0185 PF01842 ACT domain CpCap1W_0185 PF13840 ACT domain CpCap1W_0186 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CpCap1W_0186 PF17210 SdrD B-like domain CpCap1W_0186 PF00746 LPXTG cell wall anchor motif CpCap1W_0186 PF04650 YSIRK type signal peptide CpCap1W_0186 PF17961 Bacterial Ig domain CpCap1W_0187 PF01118 Semialdehyde dehydrogenase, NAD binding domain CpCap1W_0187 PF02774 Semialdehyde dehydrogenase, dimerisation domain CpCap1W_0188 PF04542 Sigma-70 region 2 CpCap1W_0188 PF08281 Sigma-70, region 4 CpCap1W_0189 PF06628 Catalase-related immune-responsive CpCap1W_0189 PF00199 Catalase CpCap1W_0195 PF17845 FbpC C-terminal regulatory nucleotide binding domain CpCap1W_0195 PF00005 ABC transporter CpCap1W_0198 PF07690 Major Facilitator Superfamily CpCap1W_0199 PF00486 Transcriptional regulatory protein, C terminal CpCap1W_0199 PF00072 Response regulator receiver domain CpCap1W_0200 PF00989 PAS fold CpCap1W_0200 PF00512 His Kinase A (phospho-acceptor) domain CpCap1W_0200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CpCap1W_0206 PF00361 Proton-conducting membrane transporter CpCap1W_0206 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CpCap1W_0206 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CpCap1W_0206 PF13244 Domain of unknown function (DUF4040) CpCap1W_0208 PF13810 Domain of unknown function (DUF4185) CpCap1W_0210 PF13732 Domain of unknown function (DUF4162) CpCap1W_0210 PF00005 ABC transporter CpCap1W_0212 PF00872 Transposase, Mutator family CpCap1W_0217 PF00905 Penicillin binding protein transpeptidase domain CpCap1W_0217 PF00912 Transglycosylase CpCap1W_0218 PF02467 Transcription factor WhiB CpCap1W_0222 PF00027 Cyclic nucleotide-binding domain CpCap1W_0222 PF13545 Crp-like helix-turn-helix domain CpCap1W_0224 PF00633 Helix-hairpin-helix motif CpCap1W_0224 PF00730 HhH-GPD superfamily base excision DNA repair protein CpCap1W_0224 PF10576 Iron-sulfur binding domain of endonuclease III CpCap1W_0226 PF00293 NUDIX domain CpCap1W_0227 PF02674 Colicin V production protein CpCap1W_0234 PF00437 Type II/IV secretion system protein CpCap1W_0240 PF00271 Helicase conserved C-terminal domain CpCap1W_0240 PF09369 Domain of unknown function (DUF1998) CpCap1W_0240 PF00270 DEAD/DEAH box helicase CpCap1W_0241 PF00313 'Cold-shock' DNA-binding domain CpCap1W_0242 PF13368 Topoisomerase C-terminal repeat CpCap1W_0242 PF01751 Toprim domain CpCap1W_0242 PF01131 DNA topoisomerase CpCap1W_0243 PF03169 OPT oligopeptide transporter protein CpCap1W_0244 PF00672 HAMP domain CpCap1W_0244 PF00211 Adenylate and Guanylate cyclase catalytic domain CpCap1W_0245 PF09115 DNA polymerase III, delta subunit, C terminal CpCap1W_0249 PF00501 AMP-binding enzyme CpCap1W_0249 PF13193 AMP-binding enzyme C-terminal domain CpCap1W_0251 PF00483 Nucleotidyl transferase CpCap1W_0252 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CpCap1W_0253 PF16363 GDP-mannose 4,6 dehydratase CpCap1W_0255 PF00326 Prolyl oligopeptidase family CpCap1W_0255 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CpCap1W_0259 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CpCap1W_0259 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpCap1W_0260 PF09856 Predicted transcriptional regulator (DUF2083) CpCap1W_0260 PF01381 Helix-turn-helix CpCap1W_0260 PF06114 IrrE N-terminal-like domain CpCap1W_0262 PF00890 FAD binding domain CpCap1W_0262 PF02910 Fumarate reductase flavoprotein C-term CpCap1W_0263 PF13183 4Fe-4S dicluster domain CpCap1W_0263 PF13085 2Fe-2S iron-sulfur cluster binding domain CpCap1W_0265 PF04286 Protein of unknown function (DUF445) CpCap1W_0267 PF01791 DeoC/LacD family aldolase CpCap1W_0269 PF04055 Radical SAM superfamily CpCap1W_0270 PF02901 Pyruvate formate lyase-like CpCap1W_0270 PF01228 Glycine radical CpCap1W_0271 PF01228 Glycine radical CpCap1W_0271 PF02901 Pyruvate formate lyase-like CpCap1W_0274 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CpCap1W_0274 PF01565 FAD binding domain CpCap1W_0275 PF13193 AMP-binding enzyme C-terminal domain CpCap1W_0275 PF00501 AMP-binding enzyme CpCap1W_0276 PF13439 Glycosyltransferase Family 4 CpCap1W_0276 PF00534 Glycosyl transferases group 1 CpCap1W_0277 PF00300 Histidine phosphatase superfamily (branch 1) CpCap1W_0278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0278 PF00512 His Kinase A (phospho-acceptor) domain CpCap1W_0279 PF00072 Response regulator receiver domain CpCap1W_0279 PF00486 Transcriptional regulatory protein, C terminal CpCap1W_0281 PF02541 Ppx/GppA phosphatase family CpCap1W_0283 PF03807 NADP oxidoreductase coenzyme F420-dependent CpCap1W_0283 PF14748 Pyrroline-5-carboxylate reductase dimerisation CpCap1W_0284 PF12728 Helix-turn-helix domain CpCap1W_0285 PF08213 Mitochondrial domain of unknown function (DUF1713) CpCap1W_0286 PF06965 Na+/H+ antiporter 1 CpCap1W_0286 PF13462 Thioredoxin CpCap1W_0289 PF05768 Glutaredoxin-like domain (DUF836) CpCap1W_0290 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CpCap1W_0290 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CpCap1W_0290 PF01488 Shikimate / quinate 5-dehydrogenase CpCap1W_0291 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CpCap1W_0291 PF03900 Porphobilinogen deaminase, C-terminal domain CpCap1W_0292 PF10414 Sirohaem synthase dimerisation region CpCap1W_0292 PF14824 Sirohaem biosynthesis protein central CpCap1W_0292 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_0293 PF00490 Delta-aminolevulinic acid dehydratase CpCap1W_0295 PF00403 Heavy-metal-associated domain CpCap1W_0296 PF01208 Uroporphyrinogen decarboxylase (URO-D) CpCap1W_0299 PF00202 Aminotransferase class-III CpCap1W_0300 PF00300 Histidine phosphatase superfamily (branch 1) CpCap1W_0303 PF05140 ResB-like family CpCap1W_0304 PF01795 MraW methylase family CpCap1W_0305 PF00005 ABC transporter CpCap1W_0307 PF01032 FecCD transport family CpCap1W_0308 PF01578 Cytochrome C assembly protein CpCap1W_0311 PF01040 UbiA prenyltransferase family CpCap1W_0312 PF13193 AMP-binding enzyme C-terminal domain CpCap1W_0312 PF00501 AMP-binding enzyme CpCap1W_0313 PF00378 Enoyl-CoA hydratase/isomerase CpCap1W_0314 PF03606 C4-dicarboxylate anaerobic carrier CpCap1W_0315 PF18374 Enolase N-terminal domain-like CpCap1W_0315 PF13378 Enolase C-terminal domain-like CpCap1W_0316 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CpCap1W_0318 PF13439 Glycosyltransferase Family 4 CpCap1W_0318 PF00534 Glycosyl transferases group 1 CpCap1W_0319 PF01209 ubiE/COQ5 methyltransferase family CpCap1W_0320 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CpCap1W_0320 PF00056 lactate/malate dehydrogenase, NAD binding domain CpCap1W_0321 PF01494 FAD binding domain CpCap1W_0322 PF00348 Polyprenyl synthetase CpCap1W_0327 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CpCap1W_0328 PF02357 Transcription termination factor nusG CpCap1W_0329 PF00298 Ribosomal protein L11, RNA binding domain CpCap1W_0329 PF03946 Ribosomal protein L11, N-terminal domain CpCap1W_0330 PF00687 Ribosomal protein L1p/L10e family CpCap1W_0332 PF03051 Peptidase C1-like family CpCap1W_0333 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CpCap1W_0334 PF00466 Ribosomal protein L10 CpCap1W_0335 PF16320 Ribosomal protein L7/L12 dimerisation domain CpCap1W_0335 PF00542 Ribosomal protein L7/L12 C-terminal domain CpCap1W_0337 PF01297 Zinc-uptake complex component A periplasmic CpCap1W_0339 PF00005 ABC transporter CpCap1W_0340 PF00950 ABC 3 transport family CpCap1W_0343 PF04560 RNA polymerase Rpb2, domain 7 CpCap1W_0343 PF10385 RNA polymerase beta subunit external 1 domain CpCap1W_0343 PF00562 RNA polymerase Rpb2, domain 6 CpCap1W_0343 PF04563 RNA polymerase beta subunit CpCap1W_0343 PF04565 RNA polymerase Rpb2, domain 3 CpCap1W_0343 PF04561 RNA polymerase Rpb2, domain 2 CpCap1W_0344 PF04997 RNA polymerase Rpb1, domain 1 CpCap1W_0344 PF04998 RNA polymerase Rpb1, domain 5 CpCap1W_0344 PF04983 RNA polymerase Rpb1, domain 3 CpCap1W_0344 PF00623 RNA polymerase Rpb1, domain 2 CpCap1W_0345 PF05231 MASE1 CpCap1W_0345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0345 PF07730 Histidine kinase CpCap1W_0346 PF00072 Response regulator receiver domain CpCap1W_0346 PF00196 Bacterial regulatory proteins, luxR family CpCap1W_0348 PF00005 ABC transporter CpCap1W_0351 PF03773 Predicted permease CpCap1W_0352 PF04055 Radical SAM superfamily CpCap1W_0355 PF00164 Ribosomal protein S12/S23 CpCap1W_0356 PF00177 Ribosomal protein S7p/S5e CpCap1W_0357 PF00679 Elongation factor G C-terminus CpCap1W_0357 PF14492 Elongation Factor G, domain II CpCap1W_0357 PF03764 Elongation factor G, domain IV CpCap1W_0357 PF00009 Elongation factor Tu GTP binding domain CpCap1W_0357 PF03144 Elongation factor Tu domain 2 CpCap1W_0358 PF03143 Elongation factor Tu C-terminal domain CpCap1W_0358 PF03144 Elongation factor Tu domain 2 CpCap1W_0358 PF00009 Elongation factor Tu GTP binding domain CpCap1W_0366 PF03780 Asp23 family, cell envelope-related function CpCap1W_0367 PF00338 Ribosomal protein S10p/S20e CpCap1W_0368 PF00297 Ribosomal protein L3 CpCap1W_0369 PF00573 Ribosomal protein L4/L1 family CpCap1W_0370 PF00276 Ribosomal protein L23 CpCap1W_0371 PF03947 Ribosomal Proteins L2, C-terminal domain CpCap1W_0371 PF00181 Ribosomal Proteins L2, RNA binding domain CpCap1W_0372 PF00203 Ribosomal protein S19 CpCap1W_0373 PF00237 Ribosomal protein L22p/L17e CpCap1W_0374 PF07650 KH domain CpCap1W_0374 PF00189 Ribosomal protein S3, C-terminal domain CpCap1W_0375 PF00252 Ribosomal protein L16p/L10e CpCap1W_0376 PF00831 Ribosomal L29 protein CpCap1W_0377 PF00366 Ribosomal protein S17 CpCap1W_0378 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_0379 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpCap1W_0379 PF00005 ABC transporter CpCap1W_0380 PF12911 N-terminal TM domain of oligopeptide transport permease C CpCap1W_0380 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0381 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0384 PF00238 Ribosomal protein L14p/L23e CpCap1W_0385 PF00467 KOW motif CpCap1W_0385 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CpCap1W_0386 PF00281 Ribosomal protein L5 CpCap1W_0386 PF00673 ribosomal L5P family C-terminus CpCap1W_0389 PF03315 Serine dehydratase beta chain CpCap1W_0389 PF03313 Serine dehydratase alpha chain CpCap1W_0391 PF17763 Glutaminase/Asparaginase C-terminal domain CpCap1W_0391 PF00710 Asparaginase, N-terminal CpCap1W_0393 PF00410 Ribosomal protein S8 CpCap1W_0394 PF00347 Ribosomal protein L6 CpCap1W_0395 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CpCap1W_0396 PF03719 Ribosomal protein S5, C-terminal domain CpCap1W_0396 PF00333 Ribosomal protein S5, N-terminal domain CpCap1W_0397 PF00327 Ribosomal protein L30p/L7e CpCap1W_0398 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CpCap1W_0401 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0402 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0406 PF17912 MalK OB fold domain CpCap1W_0406 PF00005 ABC transporter CpCap1W_0408 PF00344 SecY translocase CpCap1W_0411 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase CpCap1W_0411 PF13088 BNR repeat-like domain CpCap1W_0411 PF00754 F5/8 type C domain CpCap1W_0413 PF01176 Translation initiation factor 1A / IF-1 CpCap1W_0414 PF00416 Ribosomal protein S13/S18 CpCap1W_0415 PF00411 Ribosomal protein S11 CpCap1W_0416 PF01479 S4 domain CpCap1W_0416 PF00163 Ribosomal protein S4/S9 N-terminal domain CpCap1W_0417 PF01000 RNA polymerase Rpb3/RpoA insert domain CpCap1W_0417 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CpCap1W_0417 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CpCap1W_0418 PF01196 Ribosomal protein L17 CpCap1W_0419 PF01416 tRNA pseudouridine synthase CpCap1W_0420 PF05108 Type VII secretion system ESX-1, transport TM domain B CpCap1W_0422 PF00082 Subtilase family CpCap1W_0424 PF01580 FtsK/SpoIIIE family CpCap1W_0426 PF06013 Proteins of 100 residues with WXG CpCap1W_0427 PF06013 Proteins of 100 residues with WXG CpCap1W_0429 PF00572 Ribosomal protein L13 CpCap1W_0430 PF00380 Ribosomal protein S9/S16 CpCap1W_0431 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpCap1W_0431 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpCap1W_0431 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpCap1W_0431 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpCap1W_0436 PF00842 Alanine racemase, C-terminal domain CpCap1W_0436 PF01168 Alanine racemase, N-terminal domain CpCap1W_0437 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CpCap1W_0440 PF00814 Glycoprotease family CpCap1W_0442 PF00814 Glycoprotease family CpCap1W_0443 PF00166 Chaperonin 10 Kd subunit CpCap1W_0444 PF00118 TCP-1/cpn60 chaperonin family CpCap1W_0445 PF08281 Sigma-70, region 4 CpCap1W_0445 PF04542 Sigma-70 region 2 CpCap1W_0448 PF00478 IMP dehydrogenase / GMP reductase domain CpCap1W_0448 PF00571 CBS domain CpCap1W_0449 PF00478 IMP dehydrogenase / GMP reductase domain CpCap1W_0451 PF02540 NAD synthase CpCap1W_0451 PF00958 GMP synthase C terminal domain CpCap1W_0451 PF00117 Glutamine amidotransferase class-I CpCap1W_0455 PF00072 Response regulator receiver domain CpCap1W_0455 PF00196 Bacterial regulatory proteins, luxR family CpCap1W_0458 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0459 PF09383 NIL domain CpCap1W_0459 PF00005 ABC transporter CpCap1W_0460 PF03180 NLPA lipoprotein CpCap1W_0462 PF03180 NLPA lipoprotein CpCap1W_0467 PF01297 Zinc-uptake complex component A periplasmic CpCap1W_0468 PF00005 ABC transporter CpCap1W_0469 PF00950 ABC 3 transport family CpCap1W_0470 PF00950 ABC 3 transport family CpCap1W_0470 PF02742 Iron dependent repressor, metal binding and dimerisation domain CpCap1W_0471 PF18357 Diphteria toxin repressor SH3 domain CpCap1W_0471 PF02742 Iron dependent repressor, metal binding and dimerisation domain CpCap1W_0471 PF01325 Iron dependent repressor, N-terminal DNA binding domain CpCap1W_0472 PF00588 SpoU rRNA Methylase family CpCap1W_0473 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CpCap1W_0473 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CpCap1W_0480 PF01032 FecCD transport family CpCap1W_0481 PF00005 ABC transporter CpCap1W_0484 PF03971 Monomeric isocitrate dehydrogenase CpCap1W_0485 PF07690 Major Facilitator Superfamily CpCap1W_0486 PF06445 GyrI-like small molecule binding domain CpCap1W_0486 PF13411 MerR HTH family regulatory protein CpCap1W_0489 PF00579 tRNA synthetases class I (W and Y) CpCap1W_0490 PF03631 Virulence factor BrkB CpCap1W_0491 PF07943 Penicillin-binding protein 5, C-terminal domain CpCap1W_0491 PF00768 D-alanyl-D-alanine carboxypeptidase CpCap1W_0497 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpCap1W_0497 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpCap1W_0497 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpCap1W_0497 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpCap1W_0498 PF01546 Peptidase family M20/M25/M40 CpCap1W_0498 PF04107 Glutamate-cysteine ligase family 2(GCS2) CpCap1W_0499 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpCap1W_0499 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CpCap1W_0500 PF00364 Biotin-requiring enzyme CpCap1W_0500 PF02436 Conserved carboxylase domain CpCap1W_0500 PF00289 Biotin carboxylase, N-terminal domain CpCap1W_0500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CpCap1W_0500 PF02785 Biotin carboxylase C-terminal domain CpCap1W_0500 PF00682 HMGL-like CpCap1W_0501 PF07690 Major Facilitator Superfamily CpCap1W_0503 PF02785 Biotin carboxylase C-terminal domain CpCap1W_0503 PF00289 Biotin carboxylase, N-terminal domain CpCap1W_0503 PF00364 Biotin-requiring enzyme CpCap1W_0503 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CpCap1W_0504 PF00581 Rhodanese-like domain CpCap1W_0507 PF01757 Acyltransferase family CpCap1W_0509 PF02545 Maf-like protein CpCap1W_0510 PF00294 pfkB family carbohydrate kinase CpCap1W_0511 PF00356 Bacterial regulatory proteins, lacI family CpCap1W_0513 PF01039 Carboxyl transferase domain CpCap1W_0514 PF01039 Carboxyl transferase domain CpCap1W_0516 PF08279 HTH domain CpCap1W_0516 PF03099 Biotin/lipoate A/B protein ligase family CpCap1W_0516 PF02237 Biotin protein ligase C terminal domain CpCap1W_0518 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CpCap1W_0518 PF02222 ATP-grasp domain CpCap1W_0519 PF00731 AIR carboxylase CpCap1W_0522 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0523 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0525 PF01547 Bacterial extracellular solute-binding protein CpCap1W_0527 PF13399 LytR cell envelope-related transcriptional attenuator CpCap1W_0527 PF03816 Cell envelope-related transcriptional attenuator domain CpCap1W_0529 PF00483 Nucleotidyl transferase CpCap1W_0531 PF02467 Transcription factor WhiB CpCap1W_0534 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpCap1W_0534 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpCap1W_0534 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpCap1W_0534 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpCap1W_0536 PF01238 Phosphomannose isomerase type I CpCap1W_0541 PF05221 S-adenosyl-L-homocysteine hydrolase CpCap1W_0541 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CpCap1W_0542 PF02223 Thymidylate kinase CpCap1W_0543 PF00072 Response regulator receiver domain CpCap1W_0543 PF00486 Transcriptional regulatory protein, C terminal CpCap1W_0544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0544 PF00512 His Kinase A (phospho-acceptor) domain CpCap1W_0544 PF00672 HAMP domain CpCap1W_0545 PF10647 Lipoprotein LpqB beta-propeller domain CpCap1W_0547 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CpCap1W_0547 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CpCap1W_0548 PF07516 SecA Wing and Scaffold domain CpCap1W_0548 PF07517 SecA DEAD-like domain CpCap1W_0548 PF01043 SecA preprotein cross-linking domain CpCap1W_0552 PF00175 Oxidoreductase NAD-binding domain CpCap1W_0552 PF00111 2Fe-2S iron-sulfur cluster binding domain CpCap1W_0552 PF00970 Oxidoreductase FAD-binding domain CpCap1W_0553 PF00487 Fatty acid desaturase CpCap1W_0554 PF03193 RsgA GTPase CpCap1W_0555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CpCap1W_0556 PF02586 SOS response associated peptidase (SRAP) CpCap1W_0557 PF04073 Aminoacyl-tRNA editing domain CpCap1W_0558 PF08281 Sigma-70, region 4 CpCap1W_0558 PF04542 Sigma-70 region 2 CpCap1W_0560 PF02467 Transcription factor WhiB CpCap1W_0564 PF00270 DEAD/DEAH box helicase CpCap1W_0564 PF00271 Helicase conserved C-terminal domain CpCap1W_0569 PF13361 UvrD-like helicase C-terminal domain CpCap1W_0569 PF00580 UvrD/REP helicase N-terminal domain CpCap1W_0571 PF09297 NADH pyrophosphatase zinc ribbon domain CpCap1W_0571 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CpCap1W_0571 PF00293 NUDIX domain CpCap1W_0572 PF13361 UvrD-like helicase C-terminal domain CpCap1W_0572 PF00580 UvrD/REP helicase N-terminal domain CpCap1W_0572 PF00570 HRDC domain CpCap1W_0576 PF05362 Lon protease (S16) C-terminal proteolytic domain CpCap1W_0576 PF13180 PDZ domain CpCap1W_0579 PF03699 Uncharacterised protein family (UPF0182) CpCap1W_0589 PF07732 Multicopper oxidase CpCap1W_0589 PF00394 Multicopper oxidase CpCap1W_0593 PF00550 Phosphopantetheine attachment site CpCap1W_0593 PF13193 AMP-binding enzyme C-terminal domain CpCap1W_0593 PF00668 Condensation domain CpCap1W_0593 PF00501 AMP-binding enzyme CpCap1W_0593 PF00975 Thioesterase domain CpCap1W_0596 PF00324 Amino acid permease CpCap1W_0597 PF02436 Conserved carboxylase domain CpCap1W_0597 PF00682 HMGL-like CpCap1W_0598 PF01039 Carboxyl transferase domain CpCap1W_0600 PF02436 Conserved carboxylase domain CpCap1W_0600 PF00682 HMGL-like CpCap1W_0600 PF00364 Biotin-requiring enzyme CpCap1W_0602 PF00459 Inositol monophosphatase family CpCap1W_0603 PF00459 Inositol monophosphatase family CpCap1W_0604 PF00472 RF-1 domain CpCap1W_0604 PF03462 PCRF domain CpCap1W_0606 PF03806 AbgT putative transporter family CpCap1W_0607 PF00005 ABC transporter CpCap1W_0608 PF18075 FtsX extracellular domain CpCap1W_0608 PF02687 FtsX-like permease family CpCap1W_0609 PF01668 SmpB protein CpCap1W_0610 PF00484 Carbonic anhydrase CpCap1W_0612 PF01032 FecCD transport family CpCap1W_0613 PF01032 FecCD transport family CpCap1W_0614 PF00005 ABC transporter CpCap1W_0619 PF01479 S4 domain CpCap1W_0619 PF00849 RNA pseudouridylate synthase CpCap1W_0620 PF00582 Universal stress protein family CpCap1W_0624 PF02096 60Kd inner membrane protein CpCap1W_0625 PF04203 Sortase domain CpCap1W_0628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0628 PF07730 Histidine kinase CpCap1W_0629 PF00196 Bacterial regulatory proteins, luxR family CpCap1W_0629 PF00072 Response regulator receiver domain CpCap1W_0634 PF09594 Glycosyltransferase family 87 CpCap1W_0636 PF07690 Major Facilitator Superfamily CpCap1W_0640 PF07690 Major Facilitator Superfamily CpCap1W_0641 PF03358 NADPH-dependent FMN reductase CpCap1W_0642 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CpCap1W_0642 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CpCap1W_0644 PF01625 Peptide methionine sulfoxide reductase CpCap1W_0646 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CpCap1W_0646 PF00056 lactate/malate dehydrogenase, NAD binding domain CpCap1W_0647 PF02885 Glycosyl transferase family, helical bundle domain CpCap1W_0647 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CpCap1W_0647 PF00591 Glycosyl transferase family, a/b domain CpCap1W_0648 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CpCap1W_0649 PF01773 Na+ dependent nucleoside transporter N-terminus CpCap1W_0649 PF07662 Na+ dependent nucleoside transporter C-terminus CpCap1W_0649 PF07670 Nucleoside recognition CpCap1W_0650 PF03009 Glycerophosphoryl diester phosphodiesterase family CpCap1W_0655 PF03816 Cell envelope-related transcriptional attenuator domain CpCap1W_0657 PF01425 Amidase CpCap1W_0662 PF00392 Bacterial regulatory proteins, gntR family CpCap1W_0662 PF07702 UTRA domain CpCap1W_0663 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpCap1W_0663 PF02403 Seryl-tRNA synthetase N-terminal domain CpCap1W_0669 PF01497 Periplasmic binding protein CpCap1W_0670 PF01032 FecCD transport family CpCap1W_0671 PF00005 ABC transporter CpCap1W_0672 PF03275 UDP-galactopyranose mutase CpCap1W_0673 PF07690 Major Facilitator Superfamily CpCap1W_0674 PF03009 Glycerophosphoryl diester phosphodiesterase family CpCap1W_0676 PF01569 PAP2 superfamily CpCap1W_0678 PF17994 Galactofuranosyltransferase 2 N-terminal CpCap1W_0679 PF01569 PAP2 superfamily CpCap1W_0680 PF01040 UbiA prenyltransferase family CpCap1W_0683 PF00756 Putative esterase CpCap1W_0685 PF00756 Putative esterase CpCap1W_0685 PF08310 LGFP repeat CpCap1W_0688 PF00501 AMP-binding enzyme CpCap1W_0689 PF14765 Polyketide synthase dehydratase CpCap1W_0689 PF00698 Acyl transferase domain CpCap1W_0689 PF16197 Ketoacyl-synthetase C-terminal extension CpCap1W_0689 PF00109 Beta-ketoacyl synthase, N-terminal domain CpCap1W_0689 PF02801 Beta-ketoacyl synthase, C-terminal domain CpCap1W_0689 PF08659 KR domain CpCap1W_0689 PF00550 Phosphopantetheine attachment site CpCap1W_0690 PF01039 Carboxyl transferase domain CpCap1W_0691 PF09335 SNARE associated Golgi protein CpCap1W_0695 PF03176 MMPL family CpCap1W_0697 PF02390 Putative methyltransferase CpCap1W_0698 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CpCap1W_0698 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CpCap1W_0699 PF08241 Methyltransferase domain CpCap1W_0700 PF13439 Glycosyltransferase Family 4 CpCap1W_0700 PF00534 Glycosyl transferases group 1 CpCap1W_0702 PF11271 Porin PorA CpCap1W_0703 PF01757 Acyltransferase family CpCap1W_0704 PF11847 Alpha-(1->3)-arabinofuranosyltransferase CpCap1W_0706 PF00933 Glycosyl hydrolase family 3 N terminal domain CpCap1W_0708 PF00171 Aldehyde dehydrogenase family CpCap1W_0710 PF00692 dUTPase CpCap1W_0711 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CpCap1W_0711 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CpCap1W_0711 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CpCap1W_0714 PF12697 Alpha/beta hydrolase family CpCap1W_0715 PF16995 Transmembrane region of lysyl-tRNA synthetase CpCap1W_0715 PF00152 tRNA synthetases class II (D, K and N) CpCap1W_0715 PF01336 OB-fold nucleic acid binding domain CpCap1W_0715 PF09924 Uncharacterised conserved protein (DUF2156) CpCap1W_0720 PF00547 Urease, gamma subunit CpCap1W_0721 PF00699 Urease beta subunit CpCap1W_0722 PF01979 Amidohydrolase family CpCap1W_0722 PF00449 Urease alpha-subunit, N-terminal domain CpCap1W_0723 PF05194 UreE urease accessory protein, C-terminal domain CpCap1W_0723 PF02814 UreE urease accessory protein, N-terminal domain CpCap1W_0724 PF01730 UreF CpCap1W_0725 PF02492 CobW/HypB/UreG, nucleotide-binding domain CpCap1W_0726 PF01774 UreD urease accessory protein CpCap1W_0728 PF01032 FecCD transport family CpCap1W_0729 PF00005 ABC transporter CpCap1W_0732 PF02754 Cysteine-rich domain CpCap1W_0732 PF02665 Nitrate reductase gamma subunit CpCap1W_0732 PF13183 4Fe-4S dicluster domain CpCap1W_0735 PF01384 Phosphate transporter family CpCap1W_0737 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0738 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpCap1W_0738 PF00005 ABC transporter CpCap1W_0739 PF00005 ABC transporter CpCap1W_0740 PF01594 AI-2E family transporter CpCap1W_0744 PF00012 Hsp70 protein CpCap1W_0745 PF01025 GrpE CpCap1W_0746 PF00226 DnaJ domain CpCap1W_0746 PF00684 DnaJ central domain CpCap1W_0746 PF01556 DnaJ C terminal domain CpCap1W_0747 PF13411 MerR HTH family regulatory protein CpCap1W_0750 PF00171 Aldehyde dehydrogenase family CpCap1W_0751 PF00171 Aldehyde dehydrogenase family CpCap1W_0752 PF00107 Zinc-binding dehydrogenase CpCap1W_0752 PF08240 Alcohol dehydrogenase GroES-like domain CpCap1W_0755 PF00795 Carbon-nitrogen hydrolase CpCap1W_0756 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CpCap1W_0757 PF00005 ABC transporter CpCap1W_0758 PF12704 MacB-like periplasmic core domain CpCap1W_0758 PF00005 ABC transporter CpCap1W_0758 PF02687 FtsX-like permease family CpCap1W_0761 PF00561 alpha/beta hydrolase fold CpCap1W_0767 PF00005 ABC transporter CpCap1W_0768 PF10431 C-terminal, D2-small domain, of ClpB protein CpCap1W_0768 PF02861 Clp amino terminal domain, pathogenicity island component CpCap1W_0768 PF17871 AAA lid domain CpCap1W_0768 PF07724 AAA domain (Cdc48 subfamily) CpCap1W_0768 PF00004 ATPase family associated with various cellular activities (AAA) CpCap1W_0776 PF01266 FAD dependent oxidoreductase CpCap1W_0776 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CpCap1W_0778 PF00581 Rhodanese-like domain CpCap1W_0780 PF00156 Phosphoribosyl transferase domain CpCap1W_0784 PF01116 Fructose-bisphosphate aldolase class-II CpCap1W_0785 PF00746 LPXTG cell wall anchor motif CpCap1W_0785 PF17210 SdrD B-like domain CpCap1W_0785 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CpCap1W_0785 PF04650 YSIRK type signal peptide CpCap1W_0785 PF17961 Bacterial Ig domain CpCap1W_0789 PF00005 ABC transporter CpCap1W_0795 PF00709 Adenylosuccinate synthetase CpCap1W_0796 PF03264 NapC/NirT cytochrome c family, N-terminal region CpCap1W_0797 PF02335 Cytochrome c552 CpCap1W_0799 PF05140 ResB-like family CpCap1W_0800 PF01578 Cytochrome C assembly protein CpCap1W_0807 PF00156 Phosphoribosyl transferase domain CpCap1W_0808 PF02222 ATP-grasp domain CpCap1W_0811 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpCap1W_0812 PF01515 Phosphate acetyl/butaryl transferase CpCap1W_0813 PF00871 Acetokinase family CpCap1W_0814 PF00069 Protein kinase domain CpCap1W_0814 PF16919 Protein kinase G rubredoxin domain CpCap1W_0814 PF16918 Protein kinase G tetratricopeptide repeat CpCap1W_0815 PF00497 Bacterial extracellular solute-binding proteins, family 3 CpCap1W_0817 PF00293 NUDIX domain CpCap1W_0818 PF00005 ABC transporter CpCap1W_0820 PF13396 Phospholipase_D-nuclease N-terminal CpCap1W_0820 PF13091 PLD-like domain CpCap1W_0821 PF03372 Endonuclease/Exonuclease/phosphatase family CpCap1W_0822 PF00583 Acetyltransferase (GNAT) family CpCap1W_0823 PF01327 Polypeptide deformylase CpCap1W_0826 PF04107 Glutamate-cysteine ligase family 2(GCS2) CpCap1W_0827 PF09594 Glycosyltransferase family 87 CpCap1W_0833 PF13244 Domain of unknown function (DUF4040) CpCap1W_0833 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CpCap1W_0833 PF00361 Proton-conducting membrane transporter CpCap1W_0833 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CpCap1W_0839 PF01546 Peptidase family M20/M25/M40 CpCap1W_0839 PF07687 Peptidase dimerisation domain CpCap1W_0840 PF00118 TCP-1/cpn60 chaperonin family CpCap1W_0843 PF03976 Polyphosphate kinase 2 (PPK2) CpCap1W_0845 PF00550 Phosphopantetheine attachment site CpCap1W_0845 PF13193 AMP-binding enzyme C-terminal domain CpCap1W_0845 PF00501 AMP-binding enzyme CpCap1W_0845 PF00668 Condensation domain CpCap1W_0848 PF00375 Sodium:dicarboxylate symporter family CpCap1W_0849 PF00581 Rhodanese-like domain CpCap1W_0849 PF01206 Sulfurtransferase TusA CpCap1W_0850 PF00719 Inorganic pyrophosphatase CpCap1W_0851 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CpCap1W_0852 PF09179 TilS substrate binding domain CpCap1W_0852 PF01171 PP-loop family CpCap1W_0854 PF01434 Peptidase family M41 CpCap1W_0854 PF17862 AAA+ lid domain CpCap1W_0854 PF00004 ATPase family associated with various cellular activities (AAA) CpCap1W_0855 PF01227 GTP cyclohydrolase I CpCap1W_0856 PF00809 Pterin binding enzyme CpCap1W_0857 PF02152 Dihydroneopterin aldolase CpCap1W_0858 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CpCap1W_0862 PF02569 Pantoate-beta-alanine ligase CpCap1W_0863 PF00732 GMC oxidoreductase CpCap1W_0863 PF05199 GMC oxidoreductase CpCap1W_0864 PF02028 BCCT, betaine/carnitine/choline family transporter CpCap1W_0866 PF00375 Sodium:dicarboxylate symporter family CpCap1W_0869 PF01336 OB-fold nucleic acid binding domain CpCap1W_0869 PF00152 tRNA synthetases class II (D, K and N) CpCap1W_0872 PF01156 Inosine-uridine preferring nucleoside hydrolase CpCap1W_0873 PF07690 Major Facilitator Superfamily CpCap1W_0875 PF10431 C-terminal, D2-small domain, of ClpB protein CpCap1W_0875 PF07724 AAA domain (Cdc48 subfamily) CpCap1W_0875 PF02861 Clp amino terminal domain, pathogenicity island component CpCap1W_0875 PF17871 AAA lid domain CpCap1W_0875 PF00004 ATPase family associated with various cellular activities (AAA) CpCap1W_0878 PF00730 HhH-GPD superfamily base excision DNA repair protein CpCap1W_0878 PF00633 Helix-hairpin-helix motif CpCap1W_0879 PF00484 Carbonic anhydrase CpCap1W_0881 PF06745 KaiC CpCap1W_0881 PF18073 Rubredoxin metal binding domain CpCap1W_0885 PF02559 CarD-like/TRCF domain CpCap1W_0886 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CpCap1W_0887 PF02542 YgbB family CpCap1W_0888 PF09190 DALR domain CpCap1W_0888 PF01406 tRNA synthetases class I (C) catalytic domain CpCap1W_0889 PF08032 RNA 2'-O ribose methyltransferase substrate binding CpCap1W_0889 PF00588 SpoU rRNA Methylase family CpCap1W_0891 PF00356 Bacterial regulatory proteins, lacI family CpCap1W_0894 PF00982 Glycosyltransferase family 20 CpCap1W_0899 PF00205 Thiamine pyrophosphate enzyme, central domain CpCap1W_0899 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CpCap1W_0899 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CpCap1W_0901 PF00860 Permease family CpCap1W_0905 PF00486 Transcriptional regulatory protein, C terminal CpCap1W_0905 PF00072 Response regulator receiver domain CpCap1W_0906 PF00672 HAMP domain CpCap1W_0906 PF00512 His Kinase A (phospho-acceptor) domain CpCap1W_0906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_0908 PF01230 HIT domain CpCap1W_0909 PF02844 Phosphoribosylglycinamide synthetase, N domain CpCap1W_0909 PF02843 Phosphoribosylglycinamide synthetase, C domain CpCap1W_0909 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CpCap1W_0910 PF02386 Cation transport protein CpCap1W_0911 PF02254 TrkA-N domain CpCap1W_0911 PF02080 TrkA-C domain CpCap1W_0912 PF10397 Adenylosuccinate lyase C-terminus CpCap1W_0912 PF00206 Lyase CpCap1W_0913 PF01259 SAICAR synthetase CpCap1W_0915 PF00326 Prolyl oligopeptidase family CpCap1W_0915 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CpCap1W_0916 PF00255 Glutathione peroxidase CpCap1W_0917 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CpCap1W_0919 PF02769 AIR synthase related protein, C-terminal domain CpCap1W_0919 PF00586 AIR synthase related protein, N-terminal domain CpCap1W_0919 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CpCap1W_0920 PF03006 Haemolysin-III related CpCap1W_0921 PF00268 Ribonucleotide reductase, small chain CpCap1W_0922 PF07972 NrdI Flavodoxin like CpCap1W_0924 PF00156 Phosphoribosyl transferase domain CpCap1W_0925 PF02769 AIR synthase related protein, C-terminal domain CpCap1W_0925 PF00586 AIR synthase related protein, N-terminal domain CpCap1W_0929 PF08768 Domain of unknown function (DUF1794) CpCap1W_0930 PF00781 Diacylglycerol kinase catalytic domain CpCap1W_0932 PF00583 Acetyltransferase (GNAT) family CpCap1W_0933 PF12849 PBP superfamily domain CpCap1W_0934 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_0936 PF00005 ABC transporter CpCap1W_0938 PF01895 PhoU domain CpCap1W_0939 PF01207 Dihydrouridine synthase (Dus) CpCap1W_0940 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CpCap1W_0940 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CpCap1W_0941 PF00664 ABC transporter transmembrane region CpCap1W_0941 PF00005 ABC transporter CpCap1W_0942 PF00005 ABC transporter CpCap1W_0942 PF00664 ABC transporter transmembrane region CpCap1W_0943 PF02322 Cytochrome bd terminal oxidase subunit II CpCap1W_0944 PF01654 Cytochrome bd terminal oxidase subunit I CpCap1W_0948 PF00465 Iron-containing alcohol dehydrogenase CpCap1W_0953 PF00132 Bacterial transferase hexapeptide (six repeats) CpCap1W_0953 PF06426 Serine acetyltransferase, N-terminal CpCap1W_0954 PF00291 Pyridoxal-phosphate dependent enzyme CpCap1W_0956 PF00196 Bacterial regulatory proteins, luxR family CpCap1W_0956 PF13185 GAF domain CpCap1W_0957 PF01923 Cobalamin adenosyltransferase CpCap1W_0958 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CpCap1W_0963 PF12704 MacB-like periplasmic core domain CpCap1W_0963 PF02687 FtsX-like permease family CpCap1W_0963 PF00005 ABC transporter CpCap1W_0964 PF00005 ABC transporter CpCap1W_0964 PF12704 MacB-like periplasmic core domain CpCap1W_0964 PF02687 FtsX-like permease family CpCap1W_0965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CpCap1W_0966 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CpCap1W_0967 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpCap1W_0967 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpCap1W_0967 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpCap1W_0967 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpCap1W_0979 PF01022 Bacterial regulatory protein, arsR family CpCap1W_0982 PF02540 NAD synthase CpCap1W_0983 PF00444 Ribosomal protein L36 CpCap1W_0984 PF00462 Glutaredoxin CpCap1W_0985 PF07972 NrdI Flavodoxin like CpCap1W_0986 PF08343 Ribonucleotide reductase N-terminal CpCap1W_0986 PF00317 Ribonucleotide reductase, all-alpha domain CpCap1W_0986 PF02867 Ribonucleotide reductase, barrel domain CpCap1W_0987 PF00210 Ferritin-like domain CpCap1W_0988 PF00268 Ribonucleotide reductase, small chain CpCap1W_0990 PF00115 Cytochrome C and Quinol oxidase polypeptide I CpCap1W_0997 PF13307 Helicase C-terminal domain CpCap1W_0998 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CpCap1W_0998 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CpCap1W_0999 PF02617 ATP-dependent Clp protease adaptor protein ClpS CpCap1W_1000 PF09438 Domain of unknown function (DUF2017) CpCap1W_1001 PF01694 Rhomboid family CpCap1W_1002 PF01177 Asp/Glu/Hydantoin racemase CpCap1W_1003 PF12706 Beta-lactamase superfamily domain CpCap1W_1004 PF01138 3' exoribonuclease family, domain 1 CpCap1W_1004 PF03725 3' exoribonuclease family, domain 2 CpCap1W_1005 PF01725 Ham1 family CpCap1W_1012 PF07786 Protein of unknown function (DUF1624) CpCap1W_1012 PF04235 Protein of unknown function (DUF418) CpCap1W_1013 PF00072 Response regulator receiver domain CpCap1W_1013 PF00196 Bacterial regulatory proteins, luxR family CpCap1W_1016 PF02801 Beta-ketoacyl synthase, C-terminal domain CpCap1W_1016 PF00109 Beta-ketoacyl synthase, N-terminal domain CpCap1W_1017 PF01648 4'-phosphopantetheinyl transferase superfamily CpCap1W_1019 PF00578 AhpC/TSA family CpCap1W_1022 PF00857 Isochorismatase family CpCap1W_1023 PF00107 Zinc-binding dehydrogenase CpCap1W_1023 PF16884 N-terminal domain of oxidoreductase CpCap1W_1025 PF17964 Bacterial Ig domain CpCap1W_1025 PF03734 L,D-transpeptidase catalytic domain CpCap1W_1028 PF00929 Exonuclease CpCap1W_1029 PF00106 short chain dehydrogenase CpCap1W_1030 PF08240 Alcohol dehydrogenase GroES-like domain CpCap1W_1030 PF00107 Zinc-binding dehydrogenase CpCap1W_1032 PF01483 Proprotein convertase P-domain CpCap1W_1032 PF00082 Subtilase family CpCap1W_1035 PF13722 5TM C-terminal transporter carbon starvation CstA CpCap1W_1035 PF02554 Carbon starvation protein CstA CpCap1W_1036 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) CpCap1W_1036 PF05425 Copper resistance protein D CpCap1W_1037 PF00005 ABC transporter CpCap1W_1049 PF00005 ABC transporter CpCap1W_1049 PF12848 ABC transporter CpCap1W_1053 PF01152 Bacterial-like globin CpCap1W_1054 PF00924 Mechanosensitive ion channel CpCap1W_1056 PF01323 DSBA-like thioredoxin domain CpCap1W_1057 PF02502 Ribose/Galactose Isomerase CpCap1W_1058 PF02678 Pirin CpCap1W_1058 PF05726 Pirin C-terminal cupin domain CpCap1W_1063 PF05697 Bacterial trigger factor protein (TF) CpCap1W_1063 PF05698 Bacterial trigger factor protein (TF) C-terminus CpCap1W_1064 PF00574 Clp protease CpCap1W_1065 PF00574 Clp protease CpCap1W_1066 PF00117 Glutamine amidotransferase class-I CpCap1W_1066 PF00425 chorismate binding enzyme CpCap1W_1066 PF04715 Anthranilate synthase component I, N terminal region CpCap1W_1067 PF07724 AAA domain (Cdc48 subfamily) CpCap1W_1067 PF10431 C-terminal, D2-small domain, of ClpB protein CpCap1W_1067 PF06689 ClpX C4-type zinc finger CpCap1W_1069 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CpCap1W_1069 PF00056 lactate/malate dehydrogenase, NAD binding domain CpCap1W_1070 PF10458 Valyl tRNA synthetase tRNA binding arm CpCap1W_1070 PF00133 tRNA synthetases class I (I, L, M and V) CpCap1W_1070 PF08264 Anticodon-binding domain of tRNA CpCap1W_1071 PF08245 Mur ligase middle domain CpCap1W_1071 PF02875 Mur ligase family, glutamate ligase domain CpCap1W_1073 PF02423 Ornithine cyclodeaminase/mu-crystallin family CpCap1W_1074 PF00334 Nucleoside diphosphate kinase CpCap1W_1077 PF10150 Ribonuclease E/G family CpCap1W_1078 PF00829 Ribosomal prokaryotic L21 protein CpCap1W_1079 PF01016 Ribosomal L27 protein CpCap1W_1080 PF01018 GTP1/OBG CpCap1W_1080 PF09269 Domain of unknown function (DUF1967) CpCap1W_1080 PF01926 50S ribosome-binding GTPase CpCap1W_1081 PF01472 PUA domain CpCap1W_1081 PF00696 Amino acid kinase family CpCap1W_1082 PF02080 TrkA-C domain CpCap1W_1082 PF06826 Predicted Permease Membrane Region CpCap1W_1083 PF04304 Protein of unknown function (DUF454) CpCap1W_1084 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CpCap1W_1085 PF00171 Aldehyde dehydrogenase family CpCap1W_1086 PF01467 Cytidylyltransferase-like CpCap1W_1088 PF00300 Histidine phosphatase superfamily (branch 1) CpCap1W_1089 PF02645 Uncharacterised protein, DegV family COG1307 CpCap1W_1094 PF01810 LysE type translocator CpCap1W_1095 PF01649 Ribosomal protein S20 CpCap1W_1097 PF00679 Elongation factor G C-terminus CpCap1W_1097 PF00009 Elongation factor Tu GTP binding domain CpCap1W_1097 PF06421 GTP-binding protein LepA C-terminus CpCap1W_1099 PF00005 ABC transporter CpCap1W_1099 PF09383 NIL domain CpCap1W_1100 PF00005 ABC transporter CpCap1W_1100 PF09383 NIL domain CpCap1W_1101 PF07690 Major Facilitator Superfamily CpCap1W_1103 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_1105 PF04143 Sulphur transport CpCap1W_1106 PF01168 Alanine racemase, N-terminal domain CpCap1W_1107 PF00561 alpha/beta hydrolase fold CpCap1W_1109 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpCap1W_1109 PF00005 ABC transporter CpCap1W_1110 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_1110 PF12911 N-terminal TM domain of oligopeptide transport permease C CpCap1W_1111 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_1112 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_1115 PF02028 BCCT, betaine/carnitine/choline family transporter CpCap1W_1117 PF00296 Luciferase-like monooxygenase CpCap1W_1118 PF05525 Branched-chain amino acid transport protein CpCap1W_1123 PF00293 NUDIX domain CpCap1W_1124 PF00135 Carboxylesterase family CpCap1W_1125 PF01432 Peptidase family M3 CpCap1W_1128 PF02446 4-alpha-glucanotransferase CpCap1W_1129 PF00501 AMP-binding enzyme CpCap1W_1132 PF04055 Radical SAM superfamily CpCap1W_1133 PF01628 HrcA protein C terminal domain CpCap1W_1134 PF01556 DnaJ C terminal domain CpCap1W_1134 PF00684 DnaJ central domain CpCap1W_1134 PF00226 DnaJ domain CpCap1W_1135 PF04452 RNA methyltransferase CpCap1W_1136 PF02562 PhoH-like protein CpCap1W_1137 PF02130 Uncharacterized protein family UPF0054 CpCap1W_1138 PF01595 Cyclin M transmembrane N-terminal domain CpCap1W_1138 PF03471 Transporter associated domain CpCap1W_1138 PF00571 CBS domain CpCap1W_1139 PF08543 Phosphomethylpyrimidine kinase CpCap1W_1140 PF07650 KH domain CpCap1W_1140 PF01926 50S ribosome-binding GTPase CpCap1W_1141 PF02565 Recombination protein O C terminal CpCap1W_1141 PF11967 Recombination protein O N terminal CpCap1W_1142 PF01255 Putative undecaprenyl diphosphate synthase CpCap1W_1144 PF01475 Ferric uptake regulator family CpCap1W_1145 PF01022 Bacterial regulatory protein, arsR family CpCap1W_1146 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpCap1W_1146 PF03129 Anticodon binding domain CpCap1W_1151 PF13286 Phosphohydrolase-associated domain CpCap1W_1151 PF01966 HD domain CpCap1W_1153 PF01380 SIS domain CpCap1W_1154 PF01807 CHC2 zinc finger CpCap1W_1154 PF10410 DnaB-helicase binding domain of primase CpCap1W_1154 PF08278 DNA primase DnaG DnaB-binding CpCap1W_1154 PF13662 Toprim domain CpCap1W_1154 PF08275 DNA primase catalytic core, N-terminal domain CpCap1W_1159 PF03458 UPF0126 domain CpCap1W_1162 PF13344 Haloacid dehalogenase-like hydrolase CpCap1W_1165 PF00456 Transketolase, thiamine diphosphate binding domain CpCap1W_1165 PF17831 Pyruvate dehydrogenase E1 component middle domain CpCap1W_1166 PF11253 Protein of unknown function (DUF3052) CpCap1W_1168 PF17113 Regulatory signalling modulator protein AmpE CpCap1W_1168 PF03186 CobD/Cbib protein CpCap1W_1169 PF02104 SURF1 family CpCap1W_1170 PF01451 Low molecular weight phosphotyrosine protein phosphatase CpCap1W_1172 PF00155 Aminotransferase class I and II CpCap1W_1173 PF01784 NIF3 (NGG1p interacting factor 3) CpCap1W_1175 PF13456 Reverse transcriptase-like CpCap1W_1175 PF00300 Histidine phosphatase superfamily (branch 1) CpCap1W_1177 PF00575 S1 RNA binding domain CpCap1W_1177 PF17876 Cold shock domain CpCap1W_1177 PF08206 Ribonuclease B OB domain CpCap1W_1177 PF00773 RNB domain CpCap1W_1180 PF01928 CYTH domain CpCap1W_1180 PF05235 CHAD domain CpCap1W_1182 PF00120 Glutamine synthetase, catalytic domain CpCap1W_1182 PF03951 Glutamine synthetase, beta-Grasp domain CpCap1W_1183 PF03710 Glutamate-ammonia ligase adenylyltransferase CpCap1W_1183 PF08335 GlnD PII-uridylyltransferase CpCap1W_1184 PF01126 Heme oxygenase CpCap1W_1187 PF14821 Threonine synthase N terminus CpCap1W_1187 PF00291 Pyridoxal-phosphate dependent enzyme CpCap1W_1189 PF00293 NUDIX domain CpCap1W_1189 PF09297 NADH pyrophosphatase zinc ribbon domain CpCap1W_1190 PF13726 Na+-H+ antiporter family CpCap1W_1190 PF03553 Na+/H+ antiporter family CpCap1W_1192 PF00478 IMP dehydrogenase / GMP reductase domain CpCap1W_1192 PF00571 CBS domain CpCap1W_1197 PF00005 ABC transporter CpCap1W_1197 PF12704 MacB-like periplasmic core domain CpCap1W_1197 PF02687 FtsX-like permease family CpCap1W_1207 PF01555 DNA methylase CpCap1W_1207 PF18273 Type III R-M EcoP15I C-terminal domain CpCap1W_1221 PF00120 Glutamine synthetase, catalytic domain CpCap1W_1221 PF03951 Glutamine synthetase, beta-Grasp domain CpCap1W_1223 PF13829 Domain of unknown function (DUF4191) CpCap1W_1224 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CpCap1W_1224 PF04055 Radical SAM superfamily CpCap1W_1225 PF03099 Biotin/lipoate A/B protein ligase family CpCap1W_1227 PF01597 Glycine cleavage H-protein CpCap1W_1228 PF01571 Aminomethyltransferase folate-binding domain CpCap1W_1228 PF08669 Glycine cleavage T-protein C-terminal barrel domain CpCap1W_1229 PF02347 Glycine cleavage system P-protein CpCap1W_1230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CpCap1W_1230 PF00364 Biotin-requiring enzyme CpCap1W_1230 PF02817 e3 binding domain CpCap1W_1232 PF00883 Cytosol aminopeptidase family, catalytic domain CpCap1W_1232 PF02789 Cytosol aminopeptidase family, N-terminal domain CpCap1W_1233 PF01063 Amino-transferase class IV CpCap1W_1234 PF02654 Cobalamin-5-phosphate synthase CpCap1W_1235 PF02277 Phosphoribosyltransferase CpCap1W_1236 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CpCap1W_1237 PF11241 Protein of unknown function (DUF3043) CpCap1W_1238 PF01521 Iron-sulphur cluster biosynthesis CpCap1W_1239 PF00733 Asparagine synthase CpCap1W_1239 PF13537 Glutamine amidotransferase domain CpCap1W_1240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CpCap1W_1241 PF12270 Cytochrome c oxidase subunit IV CpCap1W_1242 PF00510 Cytochrome c oxidase subunit III CpCap1W_1243 PF00034 Cytochrome c CpCap1W_1243 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CpCap1W_1244 PF00355 Rieske [2Fe-2S] domain CpCap1W_1245 PF13631 Cytochrome b(N-terminal)/b6/petB CpCap1W_1247 PF00877 NlpC/P60 family CpCap1W_1248 PF00877 NlpC/P60 family CpCap1W_1249 PF13439 Glycosyltransferase Family 4 CpCap1W_1249 PF00534 Glycosyl transferases group 1 CpCap1W_1250 PF00480 ROK family CpCap1W_1253 PF16473 3' exoribonuclease, RNase T-like CpCap1W_1254 PF01474 Class-II DAHP synthetase family CpCap1W_1255 PF00069 Protein kinase domain CpCap1W_1255 PF03793 PASTA domain CpCap1W_1256 PF18367 Rv2175c C-terminal domain of unknown function CpCap1W_1259 PF02219 Methylenetetrahydrofolate reductase CpCap1W_1265 PF02381 MraZ protein, putative antitoxin-like CpCap1W_1266 PF01795 MraW methylase family CpCap1W_1268 PF00905 Penicillin binding protein transpeptidase domain CpCap1W_1268 PF03717 Penicillin-binding Protein dimerisation domain CpCap1W_1269 PF08245 Mur ligase middle domain CpCap1W_1269 PF02875 Mur ligase family, glutamate ligase domain CpCap1W_1269 PF01225 Mur ligase family, catalytic domain CpCap1W_1270 PF08245 Mur ligase middle domain CpCap1W_1270 PF02875 Mur ligase family, glutamate ligase domain CpCap1W_1270 PF01225 Mur ligase family, catalytic domain CpCap1W_1271 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CpCap1W_1271 PF00953 Glycosyl transferase family 4 CpCap1W_1272 PF08245 Mur ligase middle domain CpCap1W_1273 PF01098 Cell cycle protein CpCap1W_1274 PF04101 Glycosyltransferase family 28 C-terminal domain CpCap1W_1274 PF03033 Glycosyltransferase family 28 N-terminal domain CpCap1W_1276 PF01225 Mur ligase family, catalytic domain CpCap1W_1276 PF02875 Mur ligase family, glutamate ligase domain CpCap1W_1276 PF08245 Mur ligase middle domain CpCap1W_1278 PF00091 Tubulin/FtsZ family, GTPase domain CpCap1W_1278 PF12327 FtsZ family, C-terminal domain CpCap1W_1280 PF04472 Cell division protein SepF CpCap1W_1283 PF05103 DivIVA protein CpCap1W_1285 PF08264 Anticodon-binding domain of tRNA CpCap1W_1285 PF00133 tRNA synthetases class I (I, L, M and V) CpCap1W_1286 PF11798 IMS family HHH motif CpCap1W_1286 PF11799 impB/mucB/samB family C-terminal domain CpCap1W_1286 PF00817 impB/mucB/samB family CpCap1W_1287 PF17763 Glutaminase/Asparaginase C-terminal domain CpCap1W_1287 PF00710 Asparaginase, N-terminal CpCap1W_1290 PF01252 Signal peptidase (SPase) II CpCap1W_1291 PF00849 RNA pseudouridylate synthase CpCap1W_1293 PF00892 EamA-like transporter family CpCap1W_1294 PF14579 Helix-hairpin-helix motif CpCap1W_1294 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CpCap1W_1294 PF07733 Bacterial DNA polymerase III alpha NTPase domain CpCap1W_1294 PF02811 PHP domain CpCap1W_1295 PF00585 C-terminal regulatory domain of Threonine dehydratase CpCap1W_1295 PF00291 Pyridoxal-phosphate dependent enzyme CpCap1W_1296 PF09186 Domain of unknown function (DUF1949) CpCap1W_1296 PF01205 Uncharacterized protein family UPF0029 CpCap1W_1302 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CpCap1W_1302 PF14480 DNA polymerase III polC-type N-terminus I CpCap1W_1302 PF11490 DNA polymerase III polC-type N-terminus II CpCap1W_1302 PF07733 Bacterial DNA polymerase III alpha NTPase domain CpCap1W_1302 PF14579 Helix-hairpin-helix motif CpCap1W_1302 PF02811 PHP domain CpCap1W_1302 PF01336 OB-fold nucleic acid binding domain CpCap1W_1302 PF00929 Exonuclease CpCap1W_1303 PF00128 Alpha amylase, catalytic domain CpCap1W_1303 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CpCap1W_1304 PF02909 Tetracyclin repressor-like, C-terminal domain CpCap1W_1304 PF00440 Bacterial regulatory proteins, tetR family CpCap1W_1308 PF00815 Histidinol dehydrogenase CpCap1W_1309 PF00155 Aminotransferase class I and II CpCap1W_1310 PF00475 Imidazoleglycerol-phosphate dehydratase CpCap1W_1313 PF00117 Glutamine amidotransferase class-I CpCap1W_1314 PF00977 Histidine biosynthesis protein CpCap1W_1315 PF00459 Inositol monophosphatase family CpCap1W_1316 PF00977 Histidine biosynthesis protein CpCap1W_1317 PF01502 Phosphoribosyl-AMP cyclohydrolase CpCap1W_1319 PF00218 Indole-3-glycerol phosphate synthase CpCap1W_1320 PF01790 Prolipoprotein diacylglyceryl transferase CpCap1W_1321 PF00224 Pyruvate kinase, barrel domain CpCap1W_1321 PF02887 Pyruvate kinase, alpha/beta domain CpCap1W_1324 PF00343 Carbohydrate phosphorylase CpCap1W_1326 PF07687 Peptidase dimerisation domain CpCap1W_1326 PF01546 Peptidase family M20/M25/M40 CpCap1W_1329 PF02595 Glycerate kinase family CpCap1W_1330 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CpCap1W_1330 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CpCap1W_1331 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CpCap1W_1331 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CpCap1W_1334 PF02620 Large ribosomal RNA subunit accumulation protein YceD CpCap1W_1335 PF14622 Ribonuclease-III-like CpCap1W_1335 PF00035 Double-stranded RNA binding motif CpCap1W_1336 PF06827 Zinc finger found in FPG and IleRS CpCap1W_1336 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CpCap1W_1336 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CpCap1W_1337 PF01235 Sodium:alanine symporter family CpCap1W_1338 PF00708 Acylphosphatase CpCap1W_1339 PF06470 SMC proteins Flexible Hinge Domain CpCap1W_1339 PF02463 RecF/RecN/SMC N terminal domain CpCap1W_1341 PF02881 SRP54-type protein, helical bundle domain CpCap1W_1341 PF00448 SRP54-type protein, GTPase domain CpCap1W_1342 PF00543 Nitrogen regulatory protein P-II CpCap1W_1343 PF01909 Nucleotidyltransferase domain CpCap1W_1343 PF01966 HD domain CpCap1W_1344 PF02881 SRP54-type protein, helical bundle domain CpCap1W_1344 PF02978 Signal peptide binding domain CpCap1W_1344 PF00448 SRP54-type protein, GTPase domain CpCap1W_1345 PF00886 Ribosomal protein S16 CpCap1W_1347 PF01782 RimM N-terminal domain CpCap1W_1347 PF05239 PRC-barrel domain CpCap1W_1348 PF01746 tRNA (Guanine-1)-methyltransferase CpCap1W_1350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CpCap1W_1350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CpCap1W_1350 PF02378 Phosphotransferase system, EIIC CpCap1W_1351 PF16921 Tex protein YqgF-like domain CpCap1W_1351 PF09371 Tex-like protein N-terminal domain CpCap1W_1351 PF00575 S1 RNA binding domain CpCap1W_1351 PF17674 HHH domain CpCap1W_1352 PF01245 Ribosomal protein L19 CpCap1W_1353 PF10502 Signal peptidase, peptidase S26 CpCap1W_1354 PF01351 Ribonuclease HII CpCap1W_1355 PF10611 Protein of unknown function (DUF2469) CpCap1W_1357 PF13335 Magnesium chelatase, subunit ChlI C-terminal CpCap1W_1357 PF01078 Magnesium chelatase, subunit ChlI CpCap1W_1358 PF17782 DprA winged helix domain CpCap1W_1358 PF02481 DNA recombination-mediator protein A CpCap1W_1359 PF02899 Phage integrase, N-terminal SAM-like domain CpCap1W_1359 PF00589 Phage integrase family CpCap1W_1360 PF01551 Peptidase family M23 CpCap1W_1361 PF00318 Ribosomal protein S2 CpCap1W_1362 PF00889 Elongation factor TS CpCap1W_1363 PF00696 Amino acid kinase family CpCap1W_1364 PF01765 Ribosome recycling factor CpCap1W_1368 PF10939 Protein of unknown function (DUF2631) CpCap1W_1370 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CpCap1W_1370 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CpCap1W_1370 PF13288 DXP reductoisomerase C-terminal domain CpCap1W_1371 PF17820 PDZ domain CpCap1W_1371 PF02163 Peptidase family M50 CpCap1W_1372 PF04551 GcpE protein CpCap1W_1374 PF00557 Metallopeptidase family M24 CpCap1W_1375 PF07685 CobB/CobQ-like glutamine amidotransferase domain CpCap1W_1375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CpCap1W_1378 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CpCap1W_1378 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpCap1W_1380 PF06039 Malate:quinone oxidoreductase (Mqo) CpCap1W_1381 PF13519 von Willebrand factor type A domain CpCap1W_1381 PF17863 AAA lid domain CpCap1W_1381 PF07728 AAA domain (dynein-related subfamily) CpCap1W_1382 PF13519 von Willebrand factor type A domain CpCap1W_1382 PF07728 AAA domain (dynein-related subfamily) CpCap1W_1382 PF17863 AAA lid domain CpCap1W_1383 PF12557 Cob(I)alamin adenosyltransferase N terminal CpCap1W_1383 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CpCap1W_1384 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CpCap1W_1384 PF07685 CobB/CobQ-like glutamine amidotransferase domain CpCap1W_1385 PF02805 Metal binding domain of Ada CpCap1W_1385 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CpCap1W_1385 PF12833 Helix-turn-helix domain CpCap1W_1385 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CpCap1W_1386 PF02492 CobW/HypB/UreG, nucleotide-binding domain CpCap1W_1386 PF07683 Cobalamin synthesis protein cobW C-terminal domain CpCap1W_1387 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CpCap1W_1388 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_1388 PF14824 Sirohaem biosynthesis protein central CpCap1W_1388 PF10414 Sirohaem synthase dimerisation region CpCap1W_1389 PF03883 Peroxide stress protein YaaA CpCap1W_1390 PF04073 Aminoacyl-tRNA editing domain CpCap1W_1390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpCap1W_1390 PF03129 Anticodon binding domain CpCap1W_1392 PF02576 RimP N-terminal domain CpCap1W_1393 PF08529 NusA N-terminal domain CpCap1W_1393 PF13184 NusA-like KH domain CpCap1W_1395 PF11987 Translation-initiation factor 2 CpCap1W_1395 PF04760 Translation initiation factor IF-2, N-terminal region CpCap1W_1395 PF00009 Elongation factor Tu GTP binding domain CpCap1W_1396 PF02033 Ribosome-binding factor A CpCap1W_1398 PF01554 MatE CpCap1W_1400 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CpCap1W_1400 PF01648 4'-phosphopantetheinyl transferase superfamily CpCap1W_1401 PF09142 tRNA Pseudouridine synthase II, C terminal CpCap1W_1401 PF16198 tRNA pseudouridylate synthase B C-terminal domain CpCap1W_1401 PF01509 TruB family pseudouridylate synthase (N terminal domain) CpCap1W_1402 PF01687 Riboflavin kinase CpCap1W_1402 PF06574 FAD synthetase CpCap1W_1403 PF01156 Inosine-uridine preferring nucleoside hydrolase CpCap1W_1404 PF00312 Ribosomal protein S15 CpCap1W_1405 PF00013 KH domain CpCap1W_1405 PF00575 S1 RNA binding domain CpCap1W_1405 PF01138 3' exoribonuclease family, domain 1 CpCap1W_1405 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CpCap1W_1406 PF01113 Dihydrodipicolinate reductase, N-terminus CpCap1W_1406 PF05173 Dihydrodipicolinate reductase, C-terminus CpCap1W_1407 PF02511 Thymidylate synthase complementing protein CpCap1W_1408 PF00701 Dihydrodipicolinate synthetase family CpCap1W_1409 PF17770 Ribonuclease J C-terminal domain CpCap1W_1409 PF12706 Beta-lactamase superfamily domain CpCap1W_1409 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CpCap1W_1411 PF01580 FtsK/SpoIIIE family CpCap1W_1411 PF09397 Ftsk gamma domain CpCap1W_1411 PF17854 FtsK alpha domain CpCap1W_1411 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CpCap1W_1412 PF03741 Integral membrane protein TerC family CpCap1W_1415 PF00994 Probable molybdopterin binding domain CpCap1W_1415 PF18146 Damage-inducible protein CinA KH domain CpCap1W_1415 PF02464 Competence-damaged protein CpCap1W_1418 PF02361 Cobalt transport protein CpCap1W_1419 PF00005 ABC transporter CpCap1W_1420 PF02632 BioY family CpCap1W_1422 PF00154 recA bacterial DNA recombination protein CpCap1W_1423 PF02631 RecX family CpCap1W_1424 PF04055 Radical SAM superfamily CpCap1W_1424 PF00919 Uncharacterized protein family UPF0004 CpCap1W_1427 PF03993 Domain of Unknown Function (DUF349) CpCap1W_1430 PF01678 Diaminopimelate epimerase CpCap1W_1433 PF01926 50S ribosome-binding GTPase CpCap1W_1433 PF13167 GTP-binding GTPase N-terminal CpCap1W_1433 PF16360 GTP-binding GTPase Middle Region CpCap1W_1434 PF00860 Permease family CpCap1W_1435 PF03358 NADPH-dependent FMN reductase CpCap1W_1436 PF00296 Luciferase-like monooxygenase CpCap1W_1437 PF00381 PTS HPr component phosphorylation site CpCap1W_1439 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CpCap1W_1439 PF02378 Phosphotransferase system, EIIC CpCap1W_1440 PF00294 pfkB family carbohydrate kinase CpCap1W_1441 PF00455 DeoR C terminal sensor domain CpCap1W_1441 PF08220 DeoR-like helix-turn-helix domain CpCap1W_1442 PF02896 PEP-utilising enzyme, TIM barrel domain CpCap1W_1442 PF05524 PEP-utilising enzyme, N-terminal CpCap1W_1442 PF00391 PEP-utilising enzyme, mobile domain CpCap1W_1443 PF00455 DeoR C terminal sensor domain CpCap1W_1443 PF08220 DeoR-like helix-turn-helix domain CpCap1W_1445 PF00717 Peptidase S24-like CpCap1W_1445 PF01726 LexA DNA binding domain CpCap1W_1447 PF03477 ATP cone domain CpCap1W_1448 PF00270 DEAD/DEAH box helicase CpCap1W_1448 PF11898 Domain of unknown function (DUF3418) CpCap1W_1448 PF04408 Helicase associated domain (HA2) CpCap1W_1448 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CpCap1W_1448 PF00271 Helicase conserved C-terminal domain CpCap1W_1450 PF03466 LysR substrate binding domain CpCap1W_1450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CpCap1W_1452 PF00578 AhpC/TSA family CpCap1W_1453 PF02627 Carboxymuconolactone decarboxylase family CpCap1W_1457 PF01370 NAD dependent epimerase/dehydratase family CpCap1W_1458 PF01325 Iron dependent repressor, N-terminal DNA binding domain CpCap1W_1458 PF02742 Iron dependent repressor, metal binding and dimerisation domain CpCap1W_1458 PF18357 Diphteria toxin repressor SH3 domain CpCap1W_1459 PF04542 Sigma-70 region 2 CpCap1W_1459 PF00140 Sigma-70 factor, region 1.2 CpCap1W_1459 PF04545 Sigma-70, region 4 CpCap1W_1459 PF04539 Sigma-70 region 3 CpCap1W_1460 PF02580 D-Tyr-tRNA(Tyr) deacylase CpCap1W_1461 PF05175 Methyltransferase small domain CpCap1W_1461 PF17827 PrmC N-terminal domain CpCap1W_1464 PF04851 Type III restriction enzyme, res subunit CpCap1W_1466 PF04545 Sigma-70, region 4 CpCap1W_1466 PF04542 Sigma-70 region 2 CpCap1W_1466 PF04539 Sigma-70 region 3 CpCap1W_1466 PF00140 Sigma-70 factor, region 1.2 CpCap1W_1467 PF00480 ROK family CpCap1W_1471 PF00692 dUTPase CpCap1W_1474 PF01938 TRAM domain CpCap1W_1474 PF05958 tRNA (Uracil-5-)-methyltransferase CpCap1W_1475 PF02780 Transketolase, C-terminal domain CpCap1W_1475 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CpCap1W_1475 PF02779 Transketolase, pyrimidine binding domain CpCap1W_1479 PF01641 SelR domain CpCap1W_1481 PF09594 Glycosyltransferase family 87 CpCap1W_1491 PF10518 TAT (twin-arginine translocation) pathway signal sequence CpCap1W_1491 PF04261 Dyp-type peroxidase family CpCap1W_1492 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CpCap1W_1492 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpCap1W_1492 PF03129 Anticodon binding domain CpCap1W_1493 PF01230 HIT domain CpCap1W_1495 PF03279 Bacterial lipid A biosynthesis acyltransferase CpCap1W_1496 PF13439 Glycosyltransferase Family 4 CpCap1W_1498 PF00155 Aminotransferase class I and II CpCap1W_1498 PF03744 6-carboxyhexanoate--CoA ligase CpCap1W_1499 PF03744 6-carboxyhexanoate--CoA ligase CpCap1W_1503 PF01709 Transcriptional regulator CpCap1W_1504 PF02075 Crossover junction endodeoxyribonuclease RuvC CpCap1W_1505 PF07499 RuvA, C-terminal domain CpCap1W_1505 PF01330 RuvA N terminal domain CpCap1W_1506 PF17864 RuvB AAA lid domain CpCap1W_1506 PF05496 Holliday junction DNA helicase RuvB P-loop domain CpCap1W_1506 PF05491 RuvB C-terminal winged helix domain CpCap1W_1508 PF07549 SecD/SecF GG Motif CpCap1W_1508 PF02355 Protein export membrane protein CpCap1W_1509 PF02355 Protein export membrane protein CpCap1W_1509 PF07549 SecD/SecF GG Motif CpCap1W_1510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_1511 PF00156 Phosphoribosyl transferase domain CpCap1W_1512 PF02824 TGS domain CpCap1W_1512 PF13291 ACT domain CpCap1W_1512 PF04607 Region found in RelA / SpoT proteins CpCap1W_1514 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CpCap1W_1515 PF08534 Redoxin CpCap1W_1516 PF00753 Metallo-beta-lactamase superfamily CpCap1W_1517 PF13393 Histidyl-tRNA synthetase CpCap1W_1517 PF03129 Anticodon binding domain CpCap1W_1518 PF02515 CoA-transferase family III CpCap1W_1521 PF03328 HpcH/HpaI aldolase/citrate lyase family CpCap1W_1522 PF03315 Serine dehydratase beta chain CpCap1W_1522 PF03313 Serine dehydratase alpha chain CpCap1W_1523 PF03358 NADPH-dependent FMN reductase CpCap1W_1527 PF04434 SWIM zinc finger CpCap1W_1527 PF00176 SNF2 family N-terminal domain CpCap1W_1527 PF00271 Helicase conserved C-terminal domain CpCap1W_1528 PF04228 Putative neutral zinc metallopeptidase CpCap1W_1529 PF02938 GAD domain CpCap1W_1529 PF01336 OB-fold nucleic acid binding domain CpCap1W_1529 PF00152 tRNA synthetases class II (D, K and N) CpCap1W_1531 PF00004 ATPase family associated with various cellular activities (AAA) CpCap1W_1531 PF16193 AAA C-terminal domain CpCap1W_1531 PF12002 MgsA AAA+ ATPase C terminal CpCap1W_1532 PF02272 DHHA1 domain CpCap1W_1532 PF01411 tRNA synthetases class II (A) CpCap1W_1532 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CpCap1W_1533 PF03652 Holliday junction resolvase CpCap1W_1535 PF08501 Shikimate dehydrogenase substrate binding domain CpCap1W_1535 PF01488 Shikimate / quinate 5-dehydrogenase CpCap1W_1535 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CpCap1W_1537 PF01264 Chorismate synthase CpCap1W_1538 PF01202 Shikimate kinase CpCap1W_1539 PF01761 3-dehydroquinate synthase CpCap1W_1540 PF01220 Dehydroquinase class II CpCap1W_1541 PF00557 Metallopeptidase family M24 CpCap1W_1541 PF01321 Creatinase/Prolidase N-terminal domain CpCap1W_1542 PF09285 Elongation factor P, C-terminal CpCap1W_1542 PF08207 Elongation factor P (EF-P) KOW-like domain CpCap1W_1542 PF01132 Elongation factor P (EF-P) OB domain CpCap1W_1543 PF01029 NusB family CpCap1W_1546 PF01370 NAD dependent epimerase/dehydratase family CpCap1W_1546 PF08338 Domain of unknown function (DUF1731) CpCap1W_1547 PF00156 Phosphoribosyl transferase domain CpCap1W_1548 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CpCap1W_1548 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CpCap1W_1549 PF01979 Amidohydrolase family CpCap1W_1550 PF00117 Glutamine amidotransferase class-I CpCap1W_1550 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CpCap1W_1551 PF02142 MGS-like domain CpCap1W_1551 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CpCap1W_1551 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CpCap1W_1552 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CpCap1W_1555 PF00625 Guanylate kinase CpCap1W_1556 PF01192 RNA polymerase Rpb6 CpCap1W_1557 PF04127 DNA / pantothenate metabolism flavoprotein CpCap1W_1557 PF02441 Flavoprotein CpCap1W_1558 PF02772 S-adenosylmethionine synthetase, central domain CpCap1W_1558 PF00438 S-adenosylmethionine synthetase, N-terminal domain CpCap1W_1558 PF02773 S-adenosylmethionine synthetase, C-terminal domain CpCap1W_1559 PF17764 3′ DNA-binding domain (3′BD) CpCap1W_1560 PF01327 Polypeptide deformylase CpCap1W_1561 PF00551 Formyl transferase CpCap1W_1561 PF02911 Formyl transferase, C-terminal domain CpCap1W_1562 PF01189 16S rRNA methyltransferase RsmB/F CpCap1W_1562 PF01029 NusB family CpCap1W_1563 PF00834 Ribulose-phosphate 3 epimerase family CpCap1W_1564 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CpCap1W_1564 PF01872 RibD C-terminal domain CpCap1W_1565 PF00677 Lumazine binding domain CpCap1W_1566 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CpCap1W_1566 PF00925 GTP cyclohydrolase II CpCap1W_1567 PF00885 6,7-dimethyl-8-ribityllumazine synthase CpCap1W_1568 PF10756 Bacterial PH domain CpCap1W_1569 PF08459 UvrC Helix-hairpin-helix N-terminal CpCap1W_1569 PF02151 UvrB/uvrC motif CpCap1W_1569 PF01541 GIY-YIG catalytic domain CpCap1W_1570 PF03668 P-loop ATPase protein family CpCap1W_1571 PF01933 Uncharacterised protein family UPF0052 CpCap1W_1572 PF02650 WhiA C-terminal HTH domain CpCap1W_1572 PF14527 WhiA LAGLIDADG-like domain CpCap1W_1572 PF10298 WhiA N-terminal LAGLIDADG-like domain CpCap1W_1573 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CpCap1W_1573 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CpCap1W_1574 PF00162 Phosphoglycerate kinase CpCap1W_1575 PF00121 Triosephosphate isomerase CpCap1W_1576 PF00311 Phosphoenolpyruvate carboxylase CpCap1W_1577 PF03840 Preprotein translocase SecG subunit CpCap1W_1578 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CpCap1W_1580 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CpCap1W_1580 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CpCap1W_1581 PF00923 Transaldolase/Fructose-6-phosphate aldolase CpCap1W_1582 PF00456 Transketolase, thiamine diphosphate binding domain CpCap1W_1582 PF02780 Transketolase, C-terminal domain CpCap1W_1582 PF02779 Transketolase, pyrimidine binding domain CpCap1W_1583 PF01040 UbiA prenyltransferase family CpCap1W_1586 PF00005 ABC transporter CpCap1W_1586 PF13732 Domain of unknown function (DUF4162) CpCap1W_1589 PF01458 Uncharacterized protein family (UPF0051) CpCap1W_1590 PF01458 Uncharacterized protein family (UPF0051) CpCap1W_1591 PF00005 ABC transporter CpCap1W_1592 PF00266 Aminotransferase class-V CpCap1W_1593 PF01592 NifU-like N terminal domain CpCap1W_1594 PF01883 Iron-sulfur cluster assembly protein CpCap1W_1595 PF12848 ABC transporter CpCap1W_1595 PF00005 ABC transporter CpCap1W_1599 PF05167 Uncharacterised ACR (DUF711) CpCap1W_1602 PF00440 Bacterial regulatory proteins, tetR family CpCap1W_1603 PF00694 Aconitase C-terminal domain CpCap1W_1603 PF00330 Aconitase family (aconitate hydratase) CpCap1W_1606 PF00877 NlpC/P60 family CpCap1W_1611 PF01145 SPFH domain / Band 7 family CpCap1W_1613 PF09335 SNARE associated Golgi protein CpCap1W_1614 PF01642 Methylmalonyl-CoA mutase CpCap1W_1615 PF02310 B12 binding domain CpCap1W_1615 PF01642 Methylmalonyl-CoA mutase CpCap1W_1617 PF00106 short chain dehydrogenase CpCap1W_1622 PF02733 Dak1 domain CpCap1W_1623 PF02734 DAK2 domain CpCap1W_1624 PF00381 PTS HPr component phosphorylation site CpCap1W_1624 PF03610 PTS system fructose IIA component CpCap1W_1624 PF05524 PEP-utilising enzyme, N-terminal CpCap1W_1624 PF00391 PEP-utilising enzyme, mobile domain CpCap1W_1625 PF01161 Phosphatidylethanolamine-binding protein CpCap1W_1628 PF01180 Dihydroorotate dehydrogenase CpCap1W_1630 PF00248 Aldo/keto reductase family CpCap1W_1631 PF02673 Bacitracin resistance protein BacA CpCap1W_1632 PF01406 tRNA synthetases class I (C) catalytic domain CpCap1W_1634 PF02574 Homocysteine S-methyltransferase CpCap1W_1634 PF02310 B12 binding domain CpCap1W_1634 PF02965 Vitamin B12 dependent methionine synthase, activation domain CpCap1W_1634 PF00809 Pterin binding enzyme CpCap1W_1634 PF02607 B12 binding domain CpCap1W_1635 PF13419 Haloacid dehalogenase-like hydrolase CpCap1W_1636 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CpCap1W_1637 PF01634 ATP phosphoribosyltransferase CpCap1W_1637 PF08029 HisG, C-terminal domain CpCap1W_1638 PF03605 Anaerobic c4-dicarboxylate membrane transporter CpCap1W_1640 PF10415 Fumarase C C-terminus CpCap1W_1640 PF00206 Lyase CpCap1W_1641 PF01268 Formate--tetrahydrofolate ligase CpCap1W_1645 PF02127 Aminopeptidase I zinc metalloprotease (M18) CpCap1W_1646 PF08704 tRNA methyltransferase complex GCD14 subunit CpCap1W_1647 PF17758 Proteasomal ATPase OB N-terminal domain CpCap1W_1647 PF00004 ATPase family associated with various cellular activities (AAA) CpCap1W_1647 PF16450 Proteasomal ATPase OB C-terminal domain CpCap1W_1648 PF03136 Pup-ligase protein CpCap1W_1649 PF05639 Pup-like protein CpCap1W_1650 PF03136 Pup-ligase protein CpCap1W_1652 PF13280 WYL domain CpCap1W_1653 PF02416 mttA/Hcf106 family CpCap1W_1654 PF00902 Sec-independent protein translocase protein (TatC) CpCap1W_1655 PF08148 DSHCT (NUC185) domain CpCap1W_1655 PF00270 DEAD/DEAH box helicase CpCap1W_1655 PF00271 Helicase conserved C-terminal domain CpCap1W_1656 PF00557 Metallopeptidase family M24 CpCap1W_1656 PF01321 Creatinase/Prolidase N-terminal domain CpCap1W_1657 PF00106 short chain dehydrogenase CpCap1W_1658 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_1659 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_1660 PF02571 Precorrin-6x reductase CbiJ/CobK CpCap1W_1661 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_1662 PF02570 Precorrin-8X methylmutase CpCap1W_1663 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CpCap1W_1663 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CpCap1W_1664 PF02514 CobN/Magnesium Chelatase CpCap1W_1666 PF00795 Carbon-nitrogen hydrolase CpCap1W_1666 PF00535 Glycosyl transferase family 2 CpCap1W_1667 PF00535 Glycosyl transferase family 2 CpCap1W_1668 PF13397 RNA polymerase-binding protein CpCap1W_1672 PF07690 Major Facilitator Superfamily CpCap1W_1672 PF00083 Sugar (and other) transporter CpCap1W_1676 PF01544 CorA-like Mg2+ transporter protein CpCap1W_1677 PF03061 Thioesterase superfamily CpCap1W_1678 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CpCap1W_1678 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CpCap1W_1679 PF00271 Helicase conserved C-terminal domain CpCap1W_1679 PF00270 DEAD/DEAH box helicase CpCap1W_1680 PF01595 Cyclin M transmembrane N-terminal domain CpCap1W_1680 PF00571 CBS domain CpCap1W_1680 PF03471 Transporter associated domain CpCap1W_1681 PF01595 Cyclin M transmembrane N-terminal domain CpCap1W_1681 PF00571 CBS domain CpCap1W_1684 PF13411 MerR HTH family regulatory protein CpCap1W_1686 PF00376 MerR family regulatory protein CpCap1W_1687 PF00498 FHA domain CpCap1W_1688 PF01043 SecA preprotein cross-linking domain CpCap1W_1688 PF07517 SecA DEAD-like domain CpCap1W_1688 PF07516 SecA Wing and Scaffold domain CpCap1W_1691 PF02810 SEC-C motif CpCap1W_1703 PF06276 Ferric iron reductase FhuF-like transporter CpCap1W_1703 PF04183 IucA / IucC family CpCap1W_1704 PF00005 ABC transporter CpCap1W_1705 PF01032 FecCD transport family CpCap1W_1706 PF01032 FecCD transport family CpCap1W_1707 PF01497 Periplasmic binding protein CpCap1W_1708 PF09924 Uncharacterised conserved protein (DUF2156) CpCap1W_1709 PF00756 Putative esterase CpCap1W_1711 PF03605 Anaerobic c4-dicarboxylate membrane transporter CpCap1W_1712 PF01926 50S ribosome-binding GTPase CpCap1W_1712 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CpCap1W_1713 PF02224 Cytidylate kinase CpCap1W_1714 PF00849 RNA pseudouridylate synthase CpCap1W_1714 PF01479 S4 domain CpCap1W_1715 PF04079 Segregation and condensation complex subunit ScpB CpCap1W_1717 PF00202 Aminotransferase class-III CpCap1W_1718 PF00854 POT family CpCap1W_1720 PF02616 Segregation and condensation protein ScpA CpCap1W_1721 PF13614 AAA domain CpCap1W_1722 PF02899 Phage integrase, N-terminal SAM-like domain CpCap1W_1722 PF00589 Phage integrase family CpCap1W_1724 PF11382 Copper transport outer membrane protein, MctB CpCap1W_1726 PF02463 RecF/RecN/SMC N terminal domain CpCap1W_1727 PF01513 ATP-NAD kinase CpCap1W_1728 PF01728 FtsJ-like methyltransferase CpCap1W_1728 PF01479 S4 domain CpCap1W_1730 PF13344 Haloacid dehalogenase-like hydrolase CpCap1W_1730 PF18407 GCN5-related N-acetyltransferase like domain CpCap1W_1736 PF00579 tRNA synthetases class I (W and Y) CpCap1W_1737 PF03966 Trm112p-like protein CpCap1W_1738 PF14698 Argininosuccinate lyase C-terminal CpCap1W_1738 PF00206 Lyase CpCap1W_1739 PF00764 Arginosuccinate synthase CpCap1W_1740 PF02863 Arginine repressor, C-terminal domain CpCap1W_1740 PF01316 Arginine repressor, DNA binding domain CpCap1W_1741 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CpCap1W_1741 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CpCap1W_1742 PF00202 Aminotransferase class-III CpCap1W_1743 PF00696 Amino acid kinase family CpCap1W_1744 PF01960 ArgJ family CpCap1W_1745 PF01118 Semialdehyde dehydrogenase, NAD binding domain CpCap1W_1745 PF02774 Semialdehyde dehydrogenase, dimerisation domain CpCap1W_1746 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CpCap1W_1746 PF01588 Putative tRNA binding domain CpCap1W_1746 PF03147 Ferredoxin-fold anticodon binding domain CpCap1W_1746 PF03484 tRNA synthetase B5 domain CpCap1W_1746 PF03483 B3/4 domain CpCap1W_1747 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CpCap1W_1747 PF01409 tRNA synthetases class II core domain (F) CpCap1W_1748 PF00588 SpoU rRNA Methylase family CpCap1W_1748 PF08032 RNA 2'-O ribose methyltransferase substrate binding CpCap1W_1750 PF00453 Ribosomal protein L20 CpCap1W_1751 PF01632 Ribosomal protein L35 CpCap1W_1752 PF05198 Translation initiation factor IF-3, N-terminal domain CpCap1W_1752 PF00707 Translation initiation factor IF-3, C-terminal domain CpCap1W_1753 PF00005 ABC transporter CpCap1W_1753 PF17755 UvrA DNA-binding domain CpCap1W_1753 PF17760 UvrA interaction domain CpCap1W_1754 PF00753 Metallo-beta-lactamase superfamily CpCap1W_1754 PF16123 Hydroxyacylglutathione hydrolase C-terminus CpCap1W_1756 PF13538 UvrD-like helicase C-terminal domain CpCap1W_1757 PF00582 Universal stress protein family CpCap1W_1758 PF00271 Helicase conserved C-terminal domain CpCap1W_1758 PF04851 Type III restriction enzyme, res subunit CpCap1W_1758 PF02151 UvrB/uvrC motif CpCap1W_1758 PF12344 Ultra-violet resistance protein B CpCap1W_1758 PF17757 UvrB interaction domain CpCap1W_1760 PF01121 Dephospho-CoA kinase CpCap1W_1761 PF00367 phosphotransferase system, EIIB CpCap1W_1761 PF02378 Phosphotransferase system, EIIC CpCap1W_1761 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CpCap1W_1762 PF00575 S1 RNA binding domain CpCap1W_1763 PF01209 ubiE/COQ5 methyltransferase family CpCap1W_1764 PF00476 DNA polymerase family A CpCap1W_1764 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CpCap1W_1764 PF01367 5'-3' exonuclease, C-terminal SAM fold CpCap1W_1768 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_1769 PF00005 ABC transporter CpCap1W_1770 PF02567 Phenazine biosynthesis-like protein CpCap1W_1773 PF01467 Cytidylyltransferase-like CpCap1W_1775 PF00364 Biotin-requiring enzyme CpCap1W_1776 PF17191 RecG wedge domain CpCap1W_1776 PF00271 Helicase conserved C-terminal domain CpCap1W_1776 PF00270 DEAD/DEAH box helicase CpCap1W_1777 PF02734 DAK2 domain CpCap1W_1777 PF13684 Dihydroxyacetone kinase family CpCap1W_1778 PF03167 Uracil DNA glycosylase superfamily CpCap1W_1779 PF00586 AIR synthase related protein, N-terminal domain CpCap1W_1779 PF02769 AIR synthase related protein, C-terminal domain CpCap1W_1781 PF07478 D-ala D-ala ligase C-terminus CpCap1W_1781 PF01820 D-ala D-ala ligase N-terminus CpCap1W_1782 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CpCap1W_1782 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CpCap1W_1783 PF00293 NUDIX domain CpCap1W_1783 PF00300 Histidine phosphatase superfamily (branch 1) CpCap1W_1784 PF00694 Aconitase C-terminal domain CpCap1W_1785 PF00330 Aconitase family (aconitate hydratase) CpCap1W_1788 PF06968 Biotin and Thiamin Synthesis associated domain CpCap1W_1788 PF04055 Radical SAM superfamily CpCap1W_1795 PF10503 Esterase PHB depolymerase CpCap1W_1796 PF00749 tRNA synthetases class I (E and Q), catalytic domain CpCap1W_1797 PF00425 chorismate binding enzyme CpCap1W_1798 PF01557 Fumarylacetoacetate (FAA) hydrolase family CpCap1W_1802 PF00180 Isocitrate/isopropylmalate dehydrogenase CpCap1W_1803 PF01842 ACT domain CpCap1W_1803 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CpCap1W_1803 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CpCap1W_1806 PF01545 Cation efflux family CpCap1W_1807 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CpCap1W_1807 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CpCap1W_1808 PF10369 Small subunit of acetolactate synthase CpCap1W_1808 PF01842 ACT domain CpCap1W_1810 PF00924 Mechanosensitive ion channel CpCap1W_1815 PF03466 LysR substrate binding domain CpCap1W_1815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CpCap1W_1816 PF01810 LysE type translocator CpCap1W_1817 PF00248 Aldo/keto reductase family CpCap1W_1818 PF02637 GatB domain CpCap1W_1818 PF02934 GatB/GatE catalytic domain CpCap1W_1819 PF00365 Phosphofructokinase CpCap1W_1821 PF00005 ABC transporter CpCap1W_1822 PF01032 FecCD transport family CpCap1W_1824 PF07690 Major Facilitator Superfamily CpCap1W_1826 PF01425 Amidase CpCap1W_1827 PF02686 Glu-tRNAGln amidotransferase C subunit CpCap1W_1829 PF03120 NAD-dependent DNA ligase OB-fold domain CpCap1W_1829 PF00533 BRCA1 C Terminus (BRCT) domain CpCap1W_1829 PF01653 NAD-dependent DNA ligase adenylation domain CpCap1W_1829 PF12826 Helix-hairpin-helix motif CpCap1W_1829 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CpCap1W_1834 PF00266 Aminotransferase class-V CpCap1W_1835 PF01012 Electron transfer flavoprotein domain CpCap1W_1835 PF00766 Electron transfer flavoprotein FAD-binding domain CpCap1W_1836 PF01012 Electron transfer flavoprotein domain CpCap1W_1837 PF18096 THUMP domain-like CpCap1W_1839 PF00005 ABC transporter CpCap1W_1840 PF11896 Domain of unknown function (DUF3416) CpCap1W_1841 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CpCap1W_1841 PF00128 Alpha amylase, catalytic domain CpCap1W_1841 PF02806 Alpha amylase, C-terminal all-beta domain CpCap1W_1842 PF00085 Thioredoxin CpCap1W_1843 PF01910 Thiamine-binding protein CpCap1W_1846 PF01939 Endonuclease NucS CpCap1W_1848 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CpCap1W_1849 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpCap1W_1849 PF02874 ATP synthase alpha/beta family, beta-barrel domain CpCap1W_1850 PF00231 ATP synthase CpCap1W_1851 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpCap1W_1851 PF00306 ATP synthase alpha/beta chain, C terminal domain CpCap1W_1851 PF02874 ATP synthase alpha/beta family, beta-barrel domain CpCap1W_1852 PF00213 ATP synthase delta (OSCP) subunit CpCap1W_1853 PF00430 ATP synthase B/B' CF(0) CpCap1W_1854 PF00137 ATP synthase subunit C CpCap1W_1855 PF00119 ATP synthase A chain CpCap1W_1858 PF00953 Glycosyl transferase family 4 CpCap1W_1859 PF01300 Telomere recombination CpCap1W_1860 PF05175 Methyltransferase small domain CpCap1W_1860 PF17827 PrmC N-terminal domain CpCap1W_1861 PF03462 PCRF domain CpCap1W_1861 PF00472 RF-1 domain CpCap1W_1862 PF07497 Rho termination factor, RNA-binding domain CpCap1W_1862 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpCap1W_1862 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpCap1W_1862 PF07497 Rho termination factor, RNA-binding domain CpCap1W_1862 PF07498 Rho termination factor, N-terminal domain CpCap1W_1862 PF07498 Rho termination factor, N-terminal domain CpCap1W_1863 PF13193 AMP-binding enzyme C-terminal domain CpCap1W_1863 PF00501 AMP-binding enzyme CpCap1W_1865 PF00288 GHMP kinases N terminal domain CpCap1W_1866 PF00742 Homoserine dehydrogenase CpCap1W_1866 PF01842 ACT domain CpCap1W_1866 PF03447 Homoserine dehydrogenase, NAD binding domain CpCap1W_1867 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CpCap1W_1867 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CpCap1W_1868 PF00750 tRNA synthetases class I (R) CpCap1W_1868 PF05746 DALR anticodon binding domain CpCap1W_1868 PF03485 Arginyl tRNA synthetase N terminal domain CpCap1W_1869 PF02652 L-lactate permease CpCap1W_1870 PF02754 Cysteine-rich domain CpCap1W_1871 PF02589 LUD domain CpCap1W_1871 PF13183 4Fe-4S dicluster domain CpCap1W_1871 PF11870 Domain of unknown function (DUF3390) CpCap1W_1872 PF02589 LUD domain CpCap1W_1877 PF01047 MarR family CpCap1W_1879 PF13175 AAA ATPase domain CpCap1W_1882 PF12419 SNF2 Helicase protein CpCap1W_1882 PF00176 SNF2 family N-terminal domain CpCap1W_1882 PF00271 Helicase conserved C-terminal domain CpCap1W_1883 PF00474 Sodium:solute symporter family CpCap1W_1889 PF00271 Helicase conserved C-terminal domain CpCap1W_1889 PF00270 DEAD/DEAH box helicase CpCap1W_1889 PF03880 DbpA RNA binding domain CpCap1W_1890 PF00288 GHMP kinases N terminal domain CpCap1W_1890 PF08544 GHMP kinases C terminal CpCap1W_1890 PF10509 Galactokinase galactose-binding signature CpCap1W_1891 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CpCap1W_1891 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CpCap1W_1894 PF01263 Aldose 1-epimerase CpCap1W_1898 PF00135 Carboxylesterase family CpCap1W_1899 PF08501 Shikimate dehydrogenase substrate binding domain CpCap1W_1901 PF00005 ABC transporter CpCap1W_1901 PF00664 ABC transporter transmembrane region CpCap1W_1902 PF02779 Transketolase, pyrimidine binding domain CpCap1W_1902 PF16870 2-oxoglutarate dehydrogenase C-terminal CpCap1W_1902 PF00676 Dehydrogenase E1 component CpCap1W_1902 PF16078 2-oxoglutarate dehydrogenase N-terminus CpCap1W_1902 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CpCap1W_1904 PF03448 MgtE intracellular N domain CpCap1W_1904 PF01769 Divalent cation transporter CpCap1W_1904 PF00571 CBS domain CpCap1W_1906 PF01883 Iron-sulfur cluster assembly protein CpCap1W_1906 PF10609 NUBPL iron-transfer P-loop NTPase CpCap1W_1909 PF08281 Sigma-70, region 4 CpCap1W_1909 PF04542 Sigma-70 region 2 CpCap1W_1910 PF01596 O-methyltransferase CpCap1W_1911 PF00483 Nucleotidyl transferase CpCap1W_1912 PF00534 Glycosyl transferases group 1 CpCap1W_1912 PF13439 Glycosyltransferase Family 4 CpCap1W_1913 PF03306 Alpha-acetolactate decarboxylase CpCap1W_1918 PF00535 Glycosyl transferase family 2 CpCap1W_1919 PF00809 Pterin binding enzyme CpCap1W_1920 PF03641 Possible lysine decarboxylase CpCap1W_1921 PF07687 Peptidase dimerisation domain CpCap1W_1921 PF01546 Peptidase family M20/M25/M40 CpCap1W_1922 PF14602 Hexapeptide repeat of succinyl-transferase CpCap1W_1922 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CpCap1W_1923 PF00324 Amino acid permease CpCap1W_1924 PF14602 Hexapeptide repeat of succinyl-transferase CpCap1W_1924 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CpCap1W_1925 PF00324 Amino acid permease CpCap1W_1928 PF00155 Aminotransferase class I and II CpCap1W_1929 PF00037 4Fe-4S binding domain CpCap1W_1931 PF02585 GlcNAc-PI de-N-acetylase CpCap1W_1932 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_1936 PF03960 ArsC family CpCap1W_1937 PF00089 Trypsin CpCap1W_1938 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpCap1W_1938 PF00005 ABC transporter CpCap1W_1940 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_1941 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_1943 PF02224 Cytidylate kinase CpCap1W_1945 PF00005 ABC transporter CpCap1W_1946 PF09819 ABC-type cobalt transport system, permease component CpCap1W_1948 PF05661 Protein of unknown function (DUF808) CpCap1W_1949 PF17760 UvrA interaction domain CpCap1W_1949 PF00005 ABC transporter CpCap1W_1949 PF17755 UvrA DNA-binding domain CpCap1W_1950 PF00664 ABC transporter transmembrane region CpCap1W_1950 PF00005 ABC transporter CpCap1W_1951 PF00005 ABC transporter CpCap1W_1951 PF00664 ABC transporter transmembrane region CpCap1W_1952 PF03831 PhnA domain CpCap1W_1952 PF08274 PhnA Zinc-Ribbon CpCap1W_1955 PF01926 50S ribosome-binding GTPase CpCap1W_1955 PF06071 Protein of unknown function (DUF933) CpCap1W_1956 PF01594 AI-2E family transporter CpCap1W_1958 PF02401 LytB protein CpCap1W_1959 PF13742 OB-fold nucleic acid binding domain CpCap1W_1959 PF02601 Exonuclease VII, large subunit CpCap1W_1960 PF02609 Exonuclease VII small subunit CpCap1W_1962 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CpCap1W_1963 PF00206 Lyase CpCap1W_1963 PF10415 Fumarase C C-terminus CpCap1W_1965 PF07690 Major Facilitator Superfamily CpCap1W_1971 PF07690 Major Facilitator Superfamily CpCap1W_1972 PF00464 Serine hydroxymethyltransferase CpCap1W_1973 PF00485 Phosphoribulokinase / Uridine kinase family CpCap1W_1975 PF01255 Putative undecaprenyl diphosphate synthase CpCap1W_1977 PF02585 GlcNAc-PI de-N-acetylase CpCap1W_1979 PF03449 Transcription elongation factor, N-terminal CpCap1W_1979 PF01272 Transcription elongation factor, GreA/GreB, C-term CpCap1W_1982 PF12833 Helix-turn-helix domain CpCap1W_1985 PF02541 Ppx/GppA phosphatase family CpCap1W_1989 PF00113 Enolase, C-terminal TIM barrel domain CpCap1W_1989 PF03952 Enolase, N-terminal domain CpCap1W_1991 PF03819 MazG nucleotide pyrophosphohydrolase domain CpCap1W_1992 PF13520 Amino acid permease CpCap1W_1993 PF17757 UvrB interaction domain CpCap1W_1993 PF02559 CarD-like/TRCF domain CpCap1W_1993 PF00271 Helicase conserved C-terminal domain CpCap1W_1993 PF03461 TRCF domain CpCap1W_1993 PF00270 DEAD/DEAH box helicase CpCap1W_1994 PF16295 Tetracyclin repressor-like, C-terminal domain CpCap1W_1994 PF00440 Bacterial regulatory proteins, tetR family CpCap1W_1997 PF07732 Multicopper oxidase CpCap1W_1997 PF07731 Multicopper oxidase CpCap1W_1997 PF00394 Multicopper oxidase CpCap1W_1998 PF00132 Bacterial transferase hexapeptide (six repeats) CpCap1W_1998 PF12804 MobA-like NTP transferase domain CpCap1W_1999 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CpCap1W_1999 PF14572 Phosphoribosyl synthetase-associated domain CpCap1W_2000 PF00128 Alpha amylase, catalytic domain CpCap1W_2000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CpCap1W_2000 PF17999 Pullulanase N1-terminal domain CpCap1W_2001 PF01386 Ribosomal L25p family CpCap1W_2001 PF14693 Ribosomal protein TL5, C-terminal domain CpCap1W_2002 PF01195 Peptidyl-tRNA hydrolase CpCap1W_2003 PF03060 Nitronate monooxygenase CpCap1W_2004 PF01195 Peptidyl-tRNA hydrolase CpCap1W_2005 PF00106 short chain dehydrogenase CpCap1W_2006 PF03144 Elongation factor Tu domain 2 CpCap1W_2006 PF00009 Elongation factor Tu GTP binding domain CpCap1W_2006 PF16658 Class II release factor RF3, C-terminal domain CpCap1W_2007 PF00561 alpha/beta hydrolase fold CpCap1W_2010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CpCap1W_2010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CpCap1W_2013 PF00378 Enoyl-CoA hydratase/isomerase CpCap1W_2016 PF03976 Polyphosphate kinase 2 (PPK2) CpCap1W_2019 PF00005 ABC transporter CpCap1W_2019 PF16326 ABC transporter C-terminal domain CpCap1W_2019 PF12848 ABC transporter CpCap1W_2020 PF08544 GHMP kinases C terminal CpCap1W_2020 PF00288 GHMP kinases N terminal domain CpCap1W_2021 PF00398 Ribosomal RNA adenine dimethylase CpCap1W_2022 PF03990 G5-linked-Ubiquitin-like domain CpCap1W_2022 PF07501 G5 domain CpCap1W_2022 PF06737 Transglycosylase-like domain CpCap1W_2023 PF01026 TatD related DNase CpCap1W_2024 PF08264 Anticodon-binding domain of tRNA CpCap1W_2024 PF09334 tRNA synthetases class I (M) CpCap1W_2025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_2027 PF02028 BCCT, betaine/carnitine/choline family transporter CpCap1W_2029 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase CpCap1W_2029 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CpCap1W_2031 PF07681 DoxX CpCap1W_2034 PF03453 MoeA N-terminal region (domain I and II) CpCap1W_2034 PF03454 MoeA C-terminal region (domain IV) CpCap1W_2034 PF00994 Probable molybdopterin binding domain CpCap1W_2035 PF00483 Nucleotidyl transferase CpCap1W_2038 PF01741 Large-conductance mechanosensitive channel, MscL CpCap1W_2040 PF01967 MoaC family CpCap1W_2040 PF00994 Probable molybdopterin binding domain CpCap1W_2041 PF13180 PDZ domain CpCap1W_2042 PF00672 HAMP domain CpCap1W_2042 PF00512 His Kinase A (phospho-acceptor) domain CpCap1W_2042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_2043 PF00486 Transcriptional regulatory protein, C terminal CpCap1W_2043 PF00072 Response regulator receiver domain CpCap1W_2044 PF01783 Ribosomal L32p protein family CpCap1W_2045 PF01197 Ribosomal protein L31 CpCap1W_2046 PF00830 Ribosomal L28 family CpCap1W_2047 PF00471 Ribosomal protein L33 CpCap1W_2048 PF00253 Ribosomal protein S14p/S29e CpCap1W_2049 PF01084 Ribosomal protein S18 CpCap1W_2053 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_2054 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_2055 PF00497 Bacterial extracellular solute-binding proteins, family 3 CpCap1W_2056 PF00005 ABC transporter CpCap1W_2057 PF01808 AICARFT/IMPCHase bienzyme CpCap1W_2057 PF02142 MGS-like domain CpCap1W_2058 PF00551 Formyl transferase CpCap1W_2060 PF01551 Peptidase family M23 CpCap1W_2061 PF13361 UvrD-like helicase C-terminal domain CpCap1W_2061 PF00580 UvrD/REP helicase N-terminal domain CpCap1W_2062 PF01817 Chorismate mutase type II CpCap1W_2063 PF00171 Aldehyde dehydrogenase family CpCap1W_2064 PF00342 Phosphoglucose isomerase CpCap1W_2066 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CpCap1W_2066 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CpCap1W_2068 PF00271 Helicase conserved C-terminal domain CpCap1W_2068 PF08494 DEAD/H associated CpCap1W_2068 PF00270 DEAD/DEAH box helicase CpCap1W_2069 PF00459 Inositol monophosphatase family CpCap1W_2070 PF00303 Thymidylate synthase CpCap1W_2071 PF00186 Dihydrofolate reductase CpCap1W_2072 PF00462 Glutaredoxin CpCap1W_2073 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpCap1W_2077 PF12911 N-terminal TM domain of oligopeptide transport permease C CpCap1W_2077 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_2079 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_2080 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CpCap1W_2082 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CpCap1W_2083 PF00291 Pyridoxal-phosphate dependent enzyme CpCap1W_2084 PF01554 MatE CpCap1W_2086 PF00999 Sodium/hydrogen exchanger family CpCap1W_2086 PF02254 TrkA-N domain CpCap1W_2088 PF08924 Domain of unknown function (DUF1906) CpCap1W_2090 PF00474 Sodium:solute symporter family CpCap1W_2092 PF00378 Enoyl-CoA hydratase/isomerase CpCap1W_2093 PF00248 Aldo/keto reductase family CpCap1W_2094 PF00080 Copper/zinc superoxide dismutase (SODC) CpCap1W_2096 PF01039 Carboxyl transferase domain CpCap1W_2097 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CpCap1W_2098 PF00285 Citrate synthase, C-terminal domain CpCap1W_2099 PF00266 Aminotransferase class-V CpCap1W_2100 PF11268 Protein of unknown function (DUF3071) CpCap1W_2102 PF00588 SpoU rRNA Methylase family CpCap1W_2103 PF00860 Permease family CpCap1W_2104 PF11228 Protein of unknown function (DUF3027) CpCap1W_2107 PF00313 'Cold-shock' DNA-binding domain CpCap1W_2109 PF11574 Protein of unknown function (DUF3235) CpCap1W_2109 PF06737 Transglycosylase-like domain CpCap1W_2111 PF04851 Type III restriction enzyme, res subunit CpCap1W_2111 PF00271 Helicase conserved C-terminal domain CpCap1W_2119 PF00005 ABC transporter CpCap1W_2124 PF00085 Thioredoxin CpCap1W_2126 PF00403 Heavy-metal-associated domain CpCap1W_2127 PF07690 Major Facilitator Superfamily CpCap1W_2128 PF00772 DnaB-like helicase N terminal domain CpCap1W_2128 PF03796 DnaB-like helicase C terminal domain CpCap1W_2129 PF00723 Glycosyl hydrolases family 15 CpCap1W_2131 PF01281 Ribosomal protein L9, N-terminal domain CpCap1W_2131 PF03948 Ribosomal protein L9, C-terminal domain CpCap1W_2132 PF00436 Single-strand binding protein family CpCap1W_2133 PF01250 Ribosomal protein S6 CpCap1W_2136 PF00905 Penicillin binding protein transpeptidase domain CpCap1W_2136 PF00912 Transglycosylase CpCap1W_2139 PF00582 Universal stress protein family CpCap1W_2143 PF09335 SNARE associated Golgi protein CpCap1W_2144 PF00210 Ferritin-like domain CpCap1W_2145 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CpCap1W_2145 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CpCap1W_2146 PF01256 Carbohydrate kinase CpCap1W_2146 PF03853 YjeF-related protein N-terminus CpCap1W_2147 PF04892 VanZ like family CpCap1W_2150 PF08264 Anticodon-binding domain of tRNA CpCap1W_2150 PF13603 Leucyl-tRNA synthetase, Domain 2 CpCap1W_2150 PF09334 tRNA synthetases class I (M) CpCap1W_2152 PF02687 FtsX-like permease family CpCap1W_2152 PF00005 ABC transporter CpCap1W_2152 PF12704 MacB-like periplasmic core domain CpCap1W_2153 PF02687 FtsX-like permease family CpCap1W_2156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpCap1W_2156 PF07730 Histidine kinase CpCap1W_2157 PF00196 Bacterial regulatory proteins, luxR family CpCap1W_2157 PF00072 Response regulator receiver domain CpCap1W_2160 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CpCap1W_2161 PF01979 Amidohydrolase family CpCap1W_2162 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CpCap1W_2163 PF00480 ROK family CpCap1W_2164 PF07729 FCD domain CpCap1W_2164 PF00392 Bacterial regulatory proteins, gntR family CpCap1W_2165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpCap1W_2166 PF00528 Binding-protein-dependent transport system inner membrane component CpCap1W_2167 PF00005 ABC transporter CpCap1W_2167 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpCap1W_2168 PF00005 ABC transporter CpCap1W_2168 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpCap1W_2169 PF00701 Dihydrodipicolinate synthetase family CpCap1W_2175 PF08903 Domain of unknown function (DUF1846) CpCap1W_2176 PF07411 Domain of unknown function (DUF1508) CpCap1W_2179 PF00375 Sodium:dicarboxylate symporter family CpCap1W_2181 PF01593 Flavin containing amine oxidoreductase CpCap1W_2183 PF04715 Anthranilate synthase component I, N terminal region CpCap1W_2183 PF00425 chorismate binding enzyme CpCap1W_2184 PF00117 Glutamine amidotransferase class-I CpCap1W_2185 PF00591 Glycosyl transferase family, a/b domain CpCap1W_2185 PF02885 Glycosyl transferase family, helical bundle domain CpCap1W_2186 PF00218 Indole-3-glycerol phosphate synthase CpCap1W_2186 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CpCap1W_2188 PF00291 Pyridoxal-phosphate dependent enzyme CpCap1W_2189 PF00290 Tryptophan synthase alpha chain CpCap1W_2191 PF13593 SBF-like CPA transporter family (DUF4137) CpCap1W_2193 PF05437 Branched-chain amino acid transport protein (AzlD) CpCap1W_2194 PF03591 AzlC protein CpCap1W_2195 PF02622 Uncharacterized ACR, COG1678 CpCap1W_2196 PF01743 Poly A polymerase head domain CpCap1W_2196 PF13735 tRNA nucleotidyltransferase domain 2 putative CpCap1W_2196 PF12627 Probable RNA and SrmB- binding site of polymerase A CpCap1W_2197 PF00293 NUDIX domain CpCap1W_2199 PF03023 Lipid II flippase MurJ CpCap1W_2201 PF04542 Sigma-70 region 2 CpCap1W_2201 PF08281 Sigma-70, region 4 CpCap1W_2202 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpCap1W_2203 PF00085 Thioredoxin CpCap1W_2204 PF01471 Putative peptidoglycan binding domain CpCap1W_2204 PF01520 N-acetylmuramoyl-L-alanine amidase CpCap1W_2206 PF17762 HTH domain found in ParB protein CpCap1W_2206 PF02195 ParB-like nuclease domain CpCap1W_2207 PF13614 AAA domain CpCap1W_2208 PF02527 rRNA small subunit methyltransferase G CpCap1W_2210 PF02096 60Kd inner membrane protein CpCap1W_2211 PF01809 Putative membrane protein insertion efficiency factor CpCap1W_2212 PF00825 Ribonuclease P CpCap1W_2213 PF00468 Ribosomal protein L34