locus-tag	class	description
CpCap1W_0002	COG0592	DNA-directed DNA polymerase activity
CpCap1W_0005	COG0187	DNA topoisomerase II activity
CpCap1W_0009	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CpCap1W_0032	COG1120	ATPase activity
CpCap1W_0033	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_0034	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_0035	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CpCap1W_0037	COG2815	serine threonine protein kinase
CpCap1W_0037	COG0515	serine threonine protein kinase
CpCap1W_0038	COG0515	serine threonine protein kinase
CpCap1W_0039	COG0768	penicillin binding
CpCap1W_0043	COG1716	ATPase activity
CpCap1W_0043	COG1716	ATPase activity
CpCap1W_0049	COG1120	ATPase activity
CpCap1W_0050	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_0051	COG2239	Acts as a magnesium transporter
CpCap1W_0053	COG0366	Alpha amylase catalytic
CpCap1W_0065	COG1125	glycine betaine transport
CpCap1W_0065	COG0517	IMP dehydrogenase activity
CpCap1W_0067	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CpCap1W_0071	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CpCap1W_0073	COG3409	Peptidoglycan-binding domain 1 protein
CpCap1W_0073	COG3757	hydrolase, family 25
CpCap1W_0078	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CpCap1W_0083	COG1846	Transcriptional regulator
CpCap1W_0086	COG3180	Ammonia monooxygenase
CpCap1W_0088	COG0730	response to heat
CpCap1W_0091	COG1643	Atp-dependent helicase
CpCap1W_0093	COG3145	DNA-N1-methyladenine dioxygenase activity
CpCap1W_0094	COG0519	Catalyzes the synthesis of GMP from XMP
CpCap1W_0096	COG0393	Putative heavy-metal-binding
CpCap1W_0097	COG2501	S4 domain
CpCap1W_0102	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CpCap1W_0103	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CpCap1W_0105	COG3590	peptidase
CpCap1W_0111	COG1028	Short-chain dehydrogenase reductase Sdr
CpCap1W_0112	COG0277	FAD linked oxidase domain protein
CpCap1W_0118	COG1216	Glycosyl transferase, family 2
CpCap1W_0120	COG0803	Belongs to the bacterial solute-binding protein 9 family
CpCap1W_0121	COG1121	(ABC) transporter
CpCap1W_0122	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CpCap1W_0123	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CpCap1W_0124	COG0803	Belongs to the bacterial solute-binding protein 9 family
CpCap1W_0129	COG0604	alcohol dehydrogenase
CpCap1W_0134	COG0471	metal ion transport
CpCap1W_0141	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CpCap1W_0144	COG0287	Prephenate dehydrogenase
CpCap1W_0146	COG0590	tRNA wobble adenosine to inosine editing
CpCap1W_0148	COG2409	Drug exporters of the RND superfamily
CpCap1W_0149	COG0343	queuine tRNA-ribosyltransferase activity
CpCap1W_0151	COG2610	gluconate transmembrane transporter activity
CpCap1W_0152	COG3265	gluconokinase activity
CpCap1W_0153	COG1063	alcohol dehydrogenase
CpCap1W_0154	COG1028	Short-chain dehydrogenase reductase Sdr
CpCap1W_0157	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CpCap1W_0162	COG2610	gluconate transmembrane transporter activity
CpCap1W_0163	COG2084	Dehydrogenase
CpCap1W_0166	COG0179	Fumarylacetoacetate (FAA) hydrolase
CpCap1W_0169	COG3442	glutamine amidotransferase
CpCap1W_0170	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CpCap1W_0173	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CpCap1W_0174	COG2390	Transcriptional regulator
CpCap1W_0175	COG0813	purine-nucleoside phosphorylase activity
CpCap1W_0178	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CpCap1W_0184	COG0697	spore germination
CpCap1W_0185	COG0527	aspartate kinase activity
CpCap1W_0197	COG1840	ABC-type Fe3 transport system, periplasmic component
CpCap1W_0198	COG2271	Major facilitator Superfamily
CpCap1W_0200	COG3852	Histidine kinase
CpCap1W_0206	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CpCap1W_0206	COG2111	Na H antiporter
CpCap1W_0210	COG4152	abc transporter atp-binding protein
CpCap1W_0217	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CpCap1W_0222	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CpCap1W_0226	COG0494	nUDIX hydrolase
CpCap1W_0240	COG1111	helicase
CpCap1W_0240	COG1205	dead DEAH box helicase
CpCap1W_0242	COG1754	DNA topoisomerase type I activity
CpCap1W_0242	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CpCap1W_0243	COG1297	OPT oligopeptide transporter protein
CpCap1W_0245	COG0470	DNA polymerase III
CpCap1W_0249	COG0318	PFAM AMP-dependent synthetase and ligase
CpCap1W_0251	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CpCap1W_0253	COG1088	dTDP-glucose 4,6-dehydratase activity
CpCap1W_0255	COG1505	serine-type exopeptidase activity
CpCap1W_0259	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CpCap1W_0260	COG1396	sequence-specific DNA binding
CpCap1W_0260	COG3800	Transcriptional regulator
CpCap1W_0262	COG1053	succinate dehydrogenase
CpCap1W_0263	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CpCap1W_0265	COG2733	membrane
CpCap1W_0267	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CpCap1W_0271	COG1882	Formate acetyltransferase
CpCap1W_0275	COG0318	PFAM AMP-dependent synthetase and ligase
CpCap1W_0278	COG5002	protein histidine kinase activity
CpCap1W_0279	COG0745	RESPONSE REGULATOR receiver
CpCap1W_0283	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CpCap1W_0286	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CpCap1W_0286	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CpCap1W_0288	COG0560	Phosphoserine phosphatase
CpCap1W_0292	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CpCap1W_0292	COG1648	precorrin-2 dehydrogenase activity
CpCap1W_0295	COG2217	Heavy metal translocating P-type atpase
CpCap1W_0300	COG0406	alpha-ribazole phosphatase activity
CpCap1W_0304	COG0275	rRNA processing
CpCap1W_0307	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_0308	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CpCap1W_0314	COG3069	C4-dicarboxylate transmembrane transporter activity
CpCap1W_0315	COG4948	Mandelate Racemase Muconate Lactonizing
CpCap1W_0318	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CpCap1W_0318	COG0438	transferase activity, transferring glycosyl groups
CpCap1W_0320	COG0039	L-malate dehydrogenase activity
CpCap1W_0321	COG0644	oxidoreductase
CpCap1W_0327	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CpCap1W_0332	COG3579	cysteine-type endopeptidase activity
CpCap1W_0333	COG1902	pentaerythritol trinitrate reductase activity
CpCap1W_0337	COG0803	Belongs to the bacterial solute-binding protein 9 family
CpCap1W_0339	COG1121	(ABC) transporter
CpCap1W_0340	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CpCap1W_0346	COG2197	response regulator
CpCap1W_0348	COG1131	(ABC) transporter
CpCap1W_0351	COG0701	Predicted permease
CpCap1W_0366	COG1302	Protein conserved in bacteria
CpCap1W_0367	COG0051	transcription antitermination factor activity, RNA binding
CpCap1W_0388	COG0814	amino acid
CpCap1W_0389	COG1760	l-serine dehydratase
CpCap1W_0391	COG0252	asparaginase activity
CpCap1W_0401	COG1175	transmembrane transport
CpCap1W_0402	COG3833	ABC-type maltose transport systems, permease component
CpCap1W_0406	COG3842	ATPase activity
CpCap1W_0408	COG0201	protein transport
CpCap1W_0418	COG0203	ribosomal protein L17
CpCap1W_0422	COG1404	Belongs to the peptidase S8 family
CpCap1W_0424	COG1674	ftsk spoiiie
CpCap1W_0436	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CpCap1W_0449	COG0516	GMP reductase activity
CpCap1W_0458	COG2011	ABC-type metal ion transport system permease component
CpCap1W_0462	COG1464	Belongs to the NlpA lipoprotein family
CpCap1W_0467	COG0803	Belongs to the bacterial solute-binding protein 9 family
CpCap1W_0468	COG1121	(ABC) transporter
CpCap1W_0470	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CpCap1W_0470	COG1321	iron dependent repressor
CpCap1W_0471	COG1321	iron dependent repressor
CpCap1W_0472	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CpCap1W_0473	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CpCap1W_0480	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_0481	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CpCap1W_0484	COG2838	Isocitrate dehydrogenase
CpCap1W_0485	COG2814	Major facilitator Superfamily
CpCap1W_0486	COG0789	Transcriptional regulator
CpCap1W_0486	COG4978	Transcriptional regulator
CpCap1W_0489	COG0180	Tryptophanyl-tRNA synthetase
CpCap1W_0490	COG1295	ribonuclease BN
CpCap1W_0491	COG1686	Belongs to the peptidase S11 family
CpCap1W_0497	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CpCap1W_0498	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
CpCap1W_0498	COG1473	amidohydrolase
CpCap1W_0500	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CpCap1W_0501	COG2814	Major facilitator Superfamily
CpCap1W_0503	COG4770	biotin carboxylase activity
CpCap1W_0504	COG2897	thiosulfate sulfurtransferase activity
CpCap1W_0507	COG2755	lipolytic protein G-D-S-L family
CpCap1W_0507	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CpCap1W_0509	COG0424	maF-like protein
CpCap1W_0510	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CpCap1W_0511	COG1609	Transcriptional regulator
CpCap1W_0513	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CpCap1W_0514	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CpCap1W_0516	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CpCap1W_0516	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CpCap1W_0527	COG1316	TRANSCRIPTIONal
CpCap1W_0529	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CpCap1W_0536	COG1482	cell wall glycoprotein biosynthetic process
CpCap1W_0543	COG0745	RESPONSE REGULATOR receiver
CpCap1W_0544	COG5002	protein histidine kinase activity
CpCap1W_0547	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CpCap1W_0555	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CpCap1W_0556	COG2135	peptidase activity
CpCap1W_0557	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CpCap1W_0564	COG0513	Belongs to the DEAD box helicase family
CpCap1W_0569	COG0210	DNA helicase
CpCap1W_0571	COG2816	NAD+ diphosphatase activity
CpCap1W_0576	COG3480	Lon protease (S16) C-terminal proteolytic domain
CpCap1W_0602	COG0483	inositol monophosphate 1-phosphatase activity
CpCap1W_0603	COG0483	inositol monophosphate 1-phosphatase activity
CpCap1W_0606	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CpCap1W_0607	COG2884	Cell division ATP-binding protein ftsE
CpCap1W_0608	COG2177	Part of the ABC transporter FtsEX involved in
CpCap1W_0610	COG0288	reversible hydration of carbon dioxide
CpCap1W_0619	COG0564	pseudouridine synthase activity
CpCap1W_0624	COG0706	membrane insertase activity
CpCap1W_0625	COG3764	Sortase (surface protein transpeptidase)
CpCap1W_0629	COG2197	response regulator
CpCap1W_0634	COG5650	phosphatidylinositol metabolic process
CpCap1W_0636	COG2271	Major facilitator Superfamily
CpCap1W_0640	COG2814	Major facilitator Superfamily
CpCap1W_0641	COG0431	NADPH-dependent FMN reductase
CpCap1W_0649	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CpCap1W_0655	COG1316	TRANSCRIPTIONal
CpCap1W_0657	COG0154	amidase activity
CpCap1W_0662	COG2188	Transcriptional regulator
CpCap1W_0665	COG0561	phosphatase activity
CpCap1W_0669	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CpCap1W_0670	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_0673	COG2271	Major facilitator Superfamily
CpCap1W_0674	COG0584	glycerophosphoryl diester phosphodiesterase
CpCap1W_0676	COG0671	phosphoesterase, PA-phosphatase related
CpCap1W_0678	COG1216	Glycosyl transferase, family 2
CpCap1W_0679	COG0671	phosphoesterase, PA-phosphatase related
CpCap1W_0680	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CpCap1W_0682	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CpCap1W_0685	COG5479	isomerase activity
CpCap1W_0685	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CpCap1W_0688	COG0318	PFAM AMP-dependent synthetase and ligase
CpCap1W_0689	COG3321	synthase
CpCap1W_0689	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CpCap1W_0690	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CpCap1W_0699	COG0500	methyltransferase
CpCap1W_0700	COG0438	transferase activity, transferring glycosyl groups
CpCap1W_0703	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CpCap1W_0703	COG2755	lipolytic protein G-D-S-L family
CpCap1W_0704	COG4981	capsule polysaccharide biosynthetic process
CpCap1W_0706	COG1472	Belongs to the glycosyl hydrolase 3 family
CpCap1W_0708	COG1012	belongs to the aldehyde dehydrogenase family
CpCap1W_0711	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
CpCap1W_0715	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CpCap1W_0715	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CpCap1W_0720	COG0831	urea catabolic process
CpCap1W_0721	COG0832	Belongs to the urease beta subunit family
CpCap1W_0722	COG0804	urea catabolic process
CpCap1W_0723	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CpCap1W_0724	COG0830	nickel cation binding
CpCap1W_0725	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CpCap1W_0726	COG0829	nickel cation binding
CpCap1W_0728	COG4139	cobalamin transport
CpCap1W_0729	COG1120	ATPase activity
CpCap1W_0732	COG0247	lactate metabolic process
CpCap1W_0732	COG2181	nitrate reductase activity
CpCap1W_0737	COG0601	transmembrane transport
CpCap1W_0744	COG0443	Heat shock 70 kDa protein
CpCap1W_0747	COG0789	Transcriptional regulator
CpCap1W_0750	COG1012	belongs to the aldehyde dehydrogenase family
CpCap1W_0751	COG1012	belongs to the aldehyde dehydrogenase family
CpCap1W_0756	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CpCap1W_0757	COG1136	(ABC) transporter
CpCap1W_0758	COG0577	efflux transmembrane transporter activity
CpCap1W_0758	COG1136	(ABC) transporter
CpCap1W_0761	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CpCap1W_0767	COG1131	(ABC) transporter
CpCap1W_0776	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CpCap1W_0780	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CpCap1W_0784	COG0191	fructose-bisphosphate aldolase activity
CpCap1W_0793	COG4129	membrane
CpCap1W_0796	COG3005	denitrification pathway
CpCap1W_0797	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CpCap1W_0799	COG1333	cytochrome c biogenesis protein
CpCap1W_0800	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CpCap1W_0807	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
CpCap1W_0808	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CpCap1W_0812	COG0280	phosphate acetyltransferase
CpCap1W_0815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CpCap1W_0820	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CpCap1W_0821	COG0708	Exodeoxyribonuclease III
CpCap1W_0822	COG0456	acetyltransferase
CpCap1W_0823	COG0242	peptide deformylase activity
CpCap1W_0827	COG1051	belongs to the nudix hydrolase family
CpCap1W_0833	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CpCap1W_0833	COG2111	Na H antiporter
CpCap1W_0839	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CpCap1W_0843	COG2326	polyphosphate kinase activity
CpCap1W_0845	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CpCap1W_0848	COG1301	dicarboxylic acid transport
CpCap1W_0849	COG0425	Belongs to the sulfur carrier protein TusA family
CpCap1W_0849	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CpCap1W_0850	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CpCap1W_0854	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CpCap1W_0855	COG0302	gtp cyclohydrolase
CpCap1W_0856	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CpCap1W_0862	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CpCap1W_0863	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
CpCap1W_0864	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CpCap1W_0866	COG1301	dicarboxylic acid transport
CpCap1W_0869	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CpCap1W_0872	COG1957	nucleoside hydrolase
CpCap1W_0873	COG0477	Major facilitator Superfamily
CpCap1W_0875	COG0542	response to heat
CpCap1W_0879	COG0288	reversible hydration of carbon dioxide
CpCap1W_0881	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CpCap1W_0884	COG2847	Copper chaperone PCu(A)C
CpCap1W_0885	COG1329	Transcriptional regulator
CpCap1W_0889	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CpCap1W_0891	COG1609	Transcriptional regulator
CpCap1W_0899	COG0028	Belongs to the TPP enzyme family
CpCap1W_0905	COG0745	RESPONSE REGULATOR receiver
CpCap1W_0906	COG2205	protein histidine kinase activity
CpCap1W_0908	COG0537	adenosine 5'-monophosphoramidase activity
CpCap1W_0909	COG0151	Belongs to the GarS family
CpCap1W_0910	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CpCap1W_0911	COG0569	domain protein
CpCap1W_0912	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CpCap1W_0916	COG0386	Belongs to the glutathione peroxidase family
CpCap1W_0917	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CpCap1W_0918	COG0047	phosphoribosylformylglycinamidine synthase activity
CpCap1W_0919	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CpCap1W_0921	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CpCap1W_0922	COG1780	Probably involved in ribonucleotide reductase function
CpCap1W_0927	COG0354	folic acid binding
CpCap1W_0930	COG1597	lipid kinase activity
CpCap1W_0936	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CpCap1W_0941	COG4988	ABC transporter
CpCap1W_0942	COG4988	ABC transporter
CpCap1W_0943	COG1294	oxidase, subunit
CpCap1W_0944	COG1271	oxidase subunit
CpCap1W_0948	COG0371	Dehydrogenase
CpCap1W_0953	COG1045	serine acetyltransferase
CpCap1W_0956	COG2197	response regulator
CpCap1W_0963	COG1136	(ABC) transporter
CpCap1W_0963	COG0577	efflux transmembrane transporter activity
CpCap1W_0964	COG1136	(ABC) transporter
CpCap1W_0964	COG0577	efflux transmembrane transporter activity
CpCap1W_0967	COG0033	Phosphoglucomutase
CpCap1W_0982	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CpCap1W_0986	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CpCap1W_0988	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CpCap1W_0998	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CpCap1W_1003	COG1234	tRNA 3'-trailer cleavage
CpCap1W_1013	COG2197	response regulator
CpCap1W_1022	COG1335	isochorismatase
CpCap1W_1023	COG2130	NADP-dependent
CpCap1W_1025	COG1376	ErfK ybiS ycfS ynhG family protein
CpCap1W_1029	COG4221	oxidoreductase activity
CpCap1W_1030	COG0604	alcohol dehydrogenase
CpCap1W_1035	COG1966	Carbon starvation protein
CpCap1W_1036	COG3336	cytochrome c oxidase
CpCap1W_1037	COG1131	(ABC) transporter
CpCap1W_1054	COG0668	transmembrane transport
CpCap1W_1056	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CpCap1W_1063	COG0544	peptidyl-prolyl cis-trans isomerase activity
CpCap1W_1071	COG0285	dihydrofolate synthase activity
CpCap1W_1073	COG2423	ornithine cyclodeaminase activity
CpCap1W_1077	COG1530	ribonuclease E activity
CpCap1W_1082	COG2985	domain, Protein
CpCap1W_1082	COG0569	domain protein
CpCap1W_1083	COG2832	Protein of unknown function (DUF454)
CpCap1W_1086	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CpCap1W_1088	COG0406	alpha-ribazole phosphatase activity
CpCap1W_1089	COG1307	EDD domain protein, DegV family
CpCap1W_1094	COG1280	lysine exporter protein (LysE YggA)
CpCap1W_1099	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CpCap1W_1100	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CpCap1W_1103	COG0601	transmembrane transport
CpCap1W_1105	COG2391	methyltransferase activity
CpCap1W_1106	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CpCap1W_1109	COG4172	Belongs to the ABC transporter superfamily
CpCap1W_1110	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CpCap1W_1111	COG0601	transmembrane transport
CpCap1W_1112	COG0747	negative chemotaxis
CpCap1W_1115	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CpCap1W_1117	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CpCap1W_1118	COG1114	Component of the transport system for branched-chain amino acids
CpCap1W_1129	COG1022	Amp-dependent synthetase and ligase
CpCap1W_1141	COG1381	Involved in DNA repair and RecF pathway recombination
CpCap1W_1146	COG0423	glycine-tRNA ligase activity
CpCap1W_1159	COG2860	membrane
CpCap1W_1165	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CpCap1W_1173	COG3323	Protein of unknown function (DUF1653)
CpCap1W_1173	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CpCap1W_1175	COG0406	alpha-ribazole phosphatase activity
CpCap1W_1175	COG0328	RNA-DNA hybrid ribonuclease activity
CpCap1W_1177	COG0557	exoribonuclease II activity
CpCap1W_1182	COG0174	glutamine synthetase
CpCap1W_1187	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CpCap1W_1190	COG2056	Na+-H+ antiporter family
CpCap1W_1221	COG0174	glutamine synthetase
CpCap1W_1227	COG0509	glycine decarboxylation via glycine cleavage system
CpCap1W_1228	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CpCap1W_1229	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CpCap1W_1229	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CpCap1W_1230	COG0508	dehydrogenase complex catalyzes the overall conversion of
CpCap1W_1233	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CpCap1W_1235	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CpCap1W_1236	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
CpCap1W_1247	COG0791	NLP P60 protein
CpCap1W_1249	COG0438	transferase activity, transferring glycosyl groups
CpCap1W_1250	COG1940	carbohydrate kinase activity
CpCap1W_1254	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CpCap1W_1255	COG2815	serine threonine protein kinase
CpCap1W_1255	COG0515	serine threonine protein kinase
CpCap1W_1268	COG0768	penicillin binding
CpCap1W_1269	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CpCap1W_1276	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CpCap1W_1278	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CpCap1W_1280	COG1799	cell septum assembly
CpCap1W_1283	COG3599	regulation of cell shape
CpCap1W_1287	COG0252	asparaginase activity
CpCap1W_1290	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CpCap1W_1295	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CpCap1W_1296	COG1739	Uncharacterized protein family UPF0029
CpCap1W_1302	COG2176	DNA-directed DNA polymerase activity
CpCap1W_1315	COG0483	inositol monophosphate 1-phosphatase activity
CpCap1W_1319	COG0134	indole-3-glycerol-phosphate synthase activity
CpCap1W_1321	COG0469	pyruvate kinase activity
CpCap1W_1324	COG0058	SHG alpha-glucan phosphorylase activity
CpCap1W_1326	COG1473	amidohydrolase
CpCap1W_1329	COG1929	Belongs to the glycerate kinase type-1 family
CpCap1W_1330	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CpCap1W_1331	COG0686	Belongs to the AlaDH PNT family
CpCap1W_1336	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CpCap1W_1337	COG1115	amino acid carrier protein
CpCap1W_1343	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CpCap1W_1347	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CpCap1W_1348	COG0336	Belongs to the RNA methyltransferase TrmD family
CpCap1W_1350	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CpCap1W_1350	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CpCap1W_1350	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CpCap1W_1353	COG0681	Belongs to the peptidase S26 family
CpCap1W_1357	COG0606	chelatase, subunit chli
CpCap1W_1359	COG4974	Belongs to the 'phage' integrase family
CpCap1W_1371	COG0750	zinc metalloprotease
CpCap1W_1385	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CpCap1W_1385	COG2169	Transcriptional regulator
CpCap1W_1386	COG0523	cobalamin synthesis protein
CpCap1W_1387	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CpCap1W_1388	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CpCap1W_1388	COG1648	precorrin-2 dehydrogenase activity
CpCap1W_1389	COG3022	response to hydroperoxide
CpCap1W_1398	COG0534	Mate efflux family protein
CpCap1W_1401	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CpCap1W_1409	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CpCap1W_1411	COG1674	ftsk spoiiie
CpCap1W_1412	COG0861	Integral membrane protein TerC family
CpCap1W_1416	COG1396	sequence-specific DNA binding
CpCap1W_1419	COG1122	ATPase activity
CpCap1W_1420	COG1268	BioY protein
CpCap1W_1422	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CpCap1W_1423	COG2137	regulation of response to DNA damage stimulus
CpCap1W_1427	COG1196	nuclear chromosome segregation
CpCap1W_1430	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CpCap1W_1433	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CpCap1W_1434	COG2233	PERMEase
CpCap1W_1436	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CpCap1W_1437	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CpCap1W_1439	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CpCap1W_1439	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CpCap1W_1439	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CpCap1W_1440	COG1105	Belongs to the carbohydrate kinase PfkB family
CpCap1W_1441	COG1349	DNA-binding transcription factor activity
CpCap1W_1442	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CpCap1W_1443	COG1349	DNA-binding transcription factor activity
CpCap1W_1448	COG1643	Atp-dependent helicase
CpCap1W_1452	COG0450	alkyl hydroperoxide reductase
CpCap1W_1453	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CpCap1W_1461	COG2890	protein-(glutamine-N5) methyltransferase activity
CpCap1W_1479	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CpCap1W_1491	COG2837	iron assimilation
CpCap1W_1495	COG1560	Kdo2-lipid A biosynthetic process
CpCap1W_1498	COG0156	8-amino-7-oxononanoate synthase activity
CpCap1W_1501	COG1946	Acyl-CoA thioesterase
CpCap1W_1508	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CpCap1W_1509	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CpCap1W_1512	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CpCap1W_1515	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CpCap1W_1516	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CpCap1W_1522	COG1760	l-serine dehydratase
CpCap1W_1533	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CpCap1W_1537	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CpCap1W_1538	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CpCap1W_1539	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CpCap1W_1540	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CpCap1W_1541	COG0006	proline dipeptidase activity
CpCap1W_1546	COG1090	epimerase
CpCap1W_1549	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CpCap1W_1551	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CpCap1W_1560	COG0242	peptide deformylase activity
CpCap1W_1563	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CpCap1W_1569	COG0322	excinuclease ABC activity
CpCap1W_1571	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CpCap1W_1573	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CpCap1W_1577	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CpCap1W_1581	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CpCap1W_1582	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CpCap1W_1591	COG0396	ATPase activity
CpCap1W_1593	COG0822	iron-sulfur transferase activity
CpCap1W_1594	COG2151	metal-sulfur cluster biosynthetic enzyme
CpCap1W_1599	COG2848	UPF0210 protein
CpCap1W_1606	COG3883	PFAM NLP P60 protein
CpCap1W_1606	COG0791	NLP P60 protein
CpCap1W_1622	COG2376	Dihydroxyacetone kinase
CpCap1W_1623	COG1461	Dihydroxyacetone kinase
CpCap1W_1628	COG0167	dihydroorotate dehydrogenase activity
CpCap1W_1630	COG0667	Aldo Keto reductase
CpCap1W_1634	COG1410	methionine synthase
CpCap1W_1634	COG0646	methionine synthase
CpCap1W_1638	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CpCap1W_1640	COG1027	Aspartate ammonia-lyase
CpCap1W_1645	COG1362	aminopeptidase activity
CpCap1W_1648	COG4122	O-methyltransferase activity
CpCap1W_1652	COG2378	regulation of single-species biofilm formation
CpCap1W_1654	COG0805	protein transport
CpCap1W_1657	COG0300	oxidoreductase activity
CpCap1W_1667	COG0463	Glycosyl transferase, family 2
CpCap1W_1672	COG0477	Major facilitator Superfamily
CpCap1W_1676	COG0598	Magnesium transport protein CorA
CpCap1W_1678	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CpCap1W_1679	COG0513	Belongs to the DEAD box helicase family
CpCap1W_1680	COG1253	flavin adenine dinucleotide binding
CpCap1W_1688	COG0653	protein targeting
CpCap1W_1691	COG3012	SEC-C Motif Domain Protein
CpCap1W_1703	COG4264	IucA IucC family
CpCap1W_1704	COG1120	ATPase activity
CpCap1W_1705	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_1706	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_1707	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CpCap1W_1708	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CpCap1W_1709	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CpCap1W_1711	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CpCap1W_1712	COG1160	GTP binding
CpCap1W_1715	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CpCap1W_1717	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CpCap1W_1718	COG3104	oligopeptide transport
CpCap1W_1722	COG4974	Belongs to the 'phage' integrase family
CpCap1W_1730	COG0647	UMP catabolic process
CpCap1W_1737	COG2835	tetraacyldisaccharide 4'-kinase activity
CpCap1W_1738	COG0165	Argininosuccinate lyase
CpCap1W_1742	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CpCap1W_1745	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CpCap1W_1748	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CpCap1W_1751	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CpCap1W_1754	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CpCap1W_1756	COG3973	AAA domain
CpCap1W_1760	COG0237	dephospho-CoA kinase activity
CpCap1W_1762	COG0539	negative regulation of cytoplasmic translation
CpCap1W_1763	COG2226	methyltransferase
CpCap1W_1768	COG0765	amino acid transport
CpCap1W_1774	COG0742	ribosomal rna small subunit methyltransferase
CpCap1W_1775	COG0511	ligase activity, forming carbon-carbon bonds
CpCap1W_1777	COG1461	Dihydroxyacetone kinase
CpCap1W_1778	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CpCap1W_1779	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CpCap1W_1798	COG0179	Fumarylacetoacetate (FAA) hydrolase
CpCap1W_1802	COG0473	3-isopropylmalate dehydrogenase activity
CpCap1W_1810	COG0668	transmembrane transport
CpCap1W_1815	COG0583	DNA-binding transcription factor activity
CpCap1W_1817	COG0667	Aldo Keto reductase
CpCap1W_1819	COG0205	6-phosphofructokinase activity
CpCap1W_1821	COG1120	ATPase activity
CpCap1W_1822	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CpCap1W_1835	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CpCap1W_1839	COG1119	ATPase activity
CpCap1W_1853	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CpCap1W_1854	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CpCap1W_1855	COG0356	it plays a direct role in the translocation of protons across the membrane
CpCap1W_1866	COG0460	homoserine dehydrogenase
CpCap1W_1867	COG0019	diaminopimelate decarboxylase activity
CpCap1W_1869	COG1620	l-lactate permease
CpCap1W_1870	COG0247	lactate metabolic process
CpCap1W_1871	COG1139	Iron-sulfur cluster binding protein
CpCap1W_1872	COG1556	Lactate utilization protein
CpCap1W_1877	COG1846	Transcriptional regulator
CpCap1W_1882	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CpCap1W_1883	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CpCap1W_1890	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CpCap1W_1894	COG2017	converts alpha-aldose to the beta-anomer
CpCap1W_1898	COG2272	Belongs to the type-B carboxylesterase lipase family
CpCap1W_1899	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CpCap1W_1901	COG1132	(ABC) transporter
CpCap1W_1902	COG0508	dehydrogenase complex catalyzes the overall conversion of
CpCap1W_1902	COG0567	Dehydrogenase, E1 component
CpCap1W_1904	COG2239	Acts as a magnesium transporter
CpCap1W_1910	COG4122	O-methyltransferase activity
CpCap1W_1912	COG0297	glycogen (starch) synthase activity
CpCap1W_1913	COG3527	Alpha-acetolactate decarboxylase
CpCap1W_1918	COG0463	Glycosyl transferase, family 2
CpCap1W_1919	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CpCap1W_1920	COG1611	Belongs to the LOG family
CpCap1W_1921	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CpCap1W_1923	COG1113	amino acid transport
CpCap1W_1925	COG1113	amino acid transport
CpCap1W_1932	COG4166	transmembrane transport
CpCap1W_1937	COG5640	endopeptidase activity
CpCap1W_1940	COG0601	transmembrane transport
CpCap1W_1941	COG4166	transmembrane transport
CpCap1W_1943	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CpCap1W_1945	COG1122	ATPase activity
CpCap1W_1946	COG4721	ABC-type cobalt transport system, permease component
CpCap1W_1948	COG2354	Protein conserved in bacteria
CpCap1W_1949	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CpCap1W_1951	COG1132	(ABC) transporter
CpCap1W_1952	COG2824	Alkylphosphonate utilization operon protein PhnA
CpCap1W_1955	COG0012	GTP binding
CpCap1W_1962	COG1494	fructose-1,6-bisphosphatase
CpCap1W_1963	COG0114	fumarate hydratase activity
CpCap1W_1977	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CpCap1W_1991	COG3956	TIGRFAM MazG family protein
CpCap1W_1992	COG0531	amino acid
CpCap1W_1994	COG1309	transcriptional regulator
CpCap1W_1997	COG2132	Multicopper oxidase
CpCap1W_1998	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CpCap1W_1999	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CpCap1W_2000	COG1523	belongs to the glycosyl hydrolase 13 family
CpCap1W_2003	COG2070	2-Nitropropane dioxygenase
CpCap1W_2004	COG0193	aminoacyl-tRNA hydrolase activity
CpCap1W_2006	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CpCap1W_2007	COG0596	Alpha beta hydrolase
CpCap1W_2016	COG2326	polyphosphate kinase activity
CpCap1W_2019	COG0488	(ABC) transporter
CpCap1W_2022	COG3583	domain protein
CpCap1W_2023	COG0084	hydrolase, TatD family'
CpCap1W_2026	COG3949	Membrane
CpCap1W_2027	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CpCap1W_2029	COG1928	C-terminal four TMM region of protein-O-mannosyltransferase
CpCap1W_2031	COG2259	Doxx family
CpCap1W_2035	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CpCap1W_2040	COG0315	cyclic pyranopterin monophosphate synthase activity
CpCap1W_2040	COG0521	Mo-molybdopterin cofactor biosynthetic process
CpCap1W_2041	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CpCap1W_2042	COG2205	protein histidine kinase activity
CpCap1W_2043	COG0745	RESPONSE REGULATOR receiver
CpCap1W_2045	COG0254	rRNA binding
CpCap1W_2053	COG0765	amino acid transport
CpCap1W_2054	COG0765	amino acid transport
CpCap1W_2055	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CpCap1W_2056	COG1126	abc transporter atp-binding protein
CpCap1W_2060	COG0739	heme binding
CpCap1W_2066	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CpCap1W_2068	COG1201	RNA secondary structure unwinding
CpCap1W_2069	COG1218	3'(2'),5'-bisphosphate nucleotidase
CpCap1W_2079	COG4166	transmembrane transport
CpCap1W_2082	COG0019	diaminopimelate decarboxylase activity
CpCap1W_2083	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CpCap1W_2084	COG0534	Mate efflux family protein
CpCap1W_2088	COG3757	hydrolase, family 25
CpCap1W_2090	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CpCap1W_2092	COG1024	Enoyl-CoA hydratase
CpCap1W_2093	COG0656	L-ascorbic acid biosynthetic process
CpCap1W_2097	COG0545	Peptidyl-prolyl cis-trans isomerase
CpCap1W_2098	COG0372	Belongs to the citrate synthase family
CpCap1W_2102	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CpCap1W_2103	COG2252	PERMEase
CpCap1W_2109	COG1652	LysM domain
CpCap1W_2111	COG1061	Type III restriction enzyme res subunit
CpCap1W_2119	COG1131	(ABC) transporter
CpCap1W_2124	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CpCap1W_2127	COG0477	Major facilitator Superfamily
CpCap1W_2128	COG0305	Participates in initiation and elongation during chromosome replication
CpCap1W_2129	COG3387	PFAM Glycoside hydrolase 15-related
CpCap1W_2132	COG0629	single-stranded DNA binding
CpCap1W_2136	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CpCap1W_2140	COG0300	oxidoreductase activity
CpCap1W_2143	COG0586	Pfam SNARE associated Golgi protein
CpCap1W_2144	COG0783	Belongs to the Dps family
CpCap1W_2145	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CpCap1W_2146	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CpCap1W_2146	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CpCap1W_2148	COG1511	domain protein
CpCap1W_2152	COG1136	(ABC) transporter
CpCap1W_2152	COG0577	efflux transmembrane transporter activity
CpCap1W_2156	COG4585	Histidine kinase
CpCap1W_2157	COG2197	response regulator
CpCap1W_2161	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CpCap1W_2164	COG2186	Transcriptional regulator
CpCap1W_2165	COG0747	negative chemotaxis
CpCap1W_2166	COG0601	transmembrane transport
CpCap1W_2167	COG0444	Belongs to the ABC transporter superfamily
CpCap1W_2168	COG4608	Belongs to the ABC transporter superfamily
CpCap1W_2169	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CpCap1W_2176	COG3422	double-strand break repair
CpCap1W_2179	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CpCap1W_2183	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CpCap1W_2184	COG0512	Glutamine amidotransferase of anthranilate synthase
CpCap1W_2186	COG0134	indole-3-glycerol-phosphate synthase activity
CpCap1W_2186	COG0135	phosphoribosylanthranilate isomerase activity
CpCap1W_2193	COG1687	branched-chain amino acid
CpCap1W_2194	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CpCap1W_2195	COG1678	Uncharacterized ACR, COG1678
CpCap1W_2196	COG0617	tRNA 3'-terminal CCA addition
CpCap1W_2204	COG3409	Peptidoglycan-binding domain 1 protein
CpCap1W_2204	COG0860	N-Acetylmuramoyl-L-alanine amidase
CpCap1W_2207	COG1192	Involved in chromosome partitioning
CpCap1W_2211	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CpCap1W_2213	COG0230	Belongs to the bacterial ribosomal protein bL34 family