locus-tag	class	description
CTU_00030	COG3312	ion transport
CTU_00160	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CTU_00170	COG0573	inorganic phosphate transmembrane transporter activity
CTU_00180	COG0581	inorganic phosphate transmembrane transporter activity
CTU_00200	COG0704	Plays a role in the regulation of phosphate uptake
CTU_00210	COG2382	esterase
CTU_00220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTU_00230	COG2252	PERMEase
CTU_00240	COG0431	NADPH-dependent FMN reductase
CTU_00250	COG2091	lysine biosynthetic process via aminoadipic acid
CTU_00290	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CTU_00390	COG0592	DNA-directed DNA polymerase activity
CTU_00410	COG0187	DNA topoisomerase II activity
CTU_00420	COG0561	phosphatase activity
CTU_00440	COG2186	Transcriptional regulator
CTU_00450	COG3734	2-keto-3-deoxy-galactonokinase
CTU_00460	COG0800	Aldolase
CTU_00480	COG2271	Major facilitator Superfamily
CTU_00500	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CTU_00510	COG0823	Involved in the tonB-independent uptake of proteins
CTU_00520	COG5645	(Lipo)protein
CTU_00550	COG2188	Transcriptional regulator
CTU_00580	COG2149	membrane
CTU_00610	COG2814	Major facilitator Superfamily
CTU_00880	COG0515	serine threonine protein kinase
CTU_00910	COG3501	Rhs element vgr protein
CTU_01000	COG3501	Rhs element vgr protein
CTU_01040	COG3209	COG3209 Rhs family protein
CTU_01100	COG3501	Rhs element vgr protein
CTU_01120	COG4104	PAAR repeat-containing protein
CTU_01120	COG3209	COG3209 Rhs family protein
CTU_01220	COG0149	triose-phosphate isomerase activity
CTU_01240	COG3152	Membrane
CTU_01260	COG1494	fructose-1,6-bisphosphatase
CTU_01270	COG3722	fumarate hydratase activity
CTU_01290	COG2213	PTS system mannitol-specific
CTU_01290	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_01300	COG0625	glutathione transferase activity
CTU_01320	COG3276	selenocysteine insertion sequence binding
CTU_01340	COG1454	alcohol dehydrogenase
CTU_01350	COG1940	carbohydrate kinase activity
CTU_01400	COG2864	formate dehydrogenase
CTU_01410	COG0437	4 iron, 4 sulfur cluster binding
CTU_01420	COG0243	molybdopterin cofactor binding
CTU_01420	COG3383	formate dehydrogenase (NAD+) activity
CTU_01430	COG0243	molybdopterin cofactor binding
CTU_01430	COG3383	formate dehydrogenase (NAD+) activity
CTU_01470	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CTU_01510	COG2211	Major facilitator Superfamily
CTU_01530	COG1454	alcohol dehydrogenase
CTU_01610	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CTU_01620	COG2258	MOSC domain
CTU_01640	COG2186	Transcriptional regulator
CTU_01690	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CTU_01720	COG1575	Belongs to the MenA family. Type 1 subfamily
CTU_01740	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CTU_01750	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CTU_01760	COG1609	Transcriptional regulator
CTU_01770	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CTU_01800	COG0626	cystathionine gamma-synthase activity
CTU_01810	COG0460	homoserine dehydrogenase
CTU_01810	COG0527	aspartate kinase activity
CTU_01820	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CTU_01870	COG3121	Chaperone
CTU_01920	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CTU_01960	COG0583	DNA-binding transcription factor activity
CTU_02040	COG3085	chromosome segregation
CTU_02050	COG0606	chelatase, subunit chli
CTU_02080	COG3978	acetolactate synthase activity
CTU_02090	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CTU_02120	COG0583	DNA-binding transcription factor activity
CTU_02140	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CTU_02150	COG0210	DNA helicase
CTU_02180	COG3118	belongs to the thioredoxin family
CTU_02190	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CTU_02200	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CTU_02220	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CTU_02230	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CTU_02240	COG1088	dTDP-glucose 4,6-dehydratase activity
CTU_02250	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CTU_02260	COG0456	acetyltransferase
CTU_02270	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CTU_02280	COG2244	polysaccharide biosynthetic process
CTU_02320	COG1113	amino acid transport
CTU_02340	COG3071	HemY protein
CTU_02350	COG2959	enzyme of heme biosynthesis
CTU_02380	COG3072	Adenylate cyclase
CTU_02400	COG5567	small periplasmic lipoprotein
CTU_02440	COG1011	Hydrolase
CTU_02450	COG0210	DNA helicase
CTU_02510	COG2050	protein possibly involved in aromatic compounds catabolism
CTU_02520	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
CTU_02540	COG1280	lysine exporter protein (LysE YggA)
CTU_02550	COG1280	lysine exporter protein (LysE YggA)
CTU_02560	COG2267	carboxylic ester hydrolase activity
CTU_02570	COG0561	phosphatase activity
CTU_02590	COG0583	DNA-binding transcription factor activity
CTU_02610	COG0412	Dienelactone hydrolase
CTU_02620	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
CTU_02630	COG1322	Protein conserved in bacteria
CTU_02670	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CTU_02690	COG0805	protein transport
CTU_02790	COG1739	Uncharacterized protein family UPF0029
CTU_02850	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CTU_02880	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CTU_02890	COG0250	Participates in transcription elongation, termination and antitermination
CTU_02920	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CTU_02970	COG3708	Transcriptional regulator
CTU_02970	COG2207	Transcriptional regulator
CTU_02980	COG1447	Phosphotransferase system cellobiose-specific component IIA
CTU_03000	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CTU_03020	COG2104	thiamine diphosphate biosynthetic process
CTU_03030	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CTU_03060	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
CTU_03100	COG3068	Protein conserved in bacteria
CTU_03110	COG0776	regulation of translation
CTU_03130	COG0151	Belongs to the GarS family
CTU_03150	COG1126	abc transporter atp-binding protein
CTU_03160	COG0765	amino acid transport
CTU_03170	COG4597	amino acid ABC transporter
CTU_03180	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTU_03210	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CTU_03220	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTU_03230	COG1309	transcriptional regulator
CTU_03300	COG4145	pantothenate transmembrane transporter activity
CTU_03310	COG3924	membrane
CTU_03320	COG0439	Biotin carboxylase
CTU_03330	COG0511	ligase activity, forming carbon-carbon bonds
CTU_03340	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CTU_03370	COG0604	alcohol dehydrogenase
CTU_03380	COG2200	EAL domain
CTU_03380	COG2199	diguanylate cyclase activity
CTU_03400	COG1077	Cell shape determining protein MreB Mrl
CTU_03410	COG1792	Involved in formation and maintenance of cell shape
CTU_03420	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CTU_03440	COG1530	ribonuclease E activity
CTU_03450	COG3164	Protein of unknown function
CTU_03460	COG0312	modulator of DNA gyrase
CTU_03470	COG0583	DNA-binding transcription factor activity
CTU_03490	COG1289	transmembrane transporter activity
CTU_03510	COG2732	(Barnase) inhibitor
CTU_03570	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CTU_03580	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CTU_03590	COG3105	Protein conserved in bacteria
CTU_03600	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CTU_03630	COG0625	glutathione transferase activity
CTU_03640	COG2969	positive regulation of protein catabolic process
CTU_03660	COG0493	'glutamate synthase
CTU_03670	COG0070	glutamate synthase
CTU_03670	COG0069	glutamate synthase activity
CTU_03670	COG0067	glutamate synthase
CTU_03680	COG1242	4 iron, 4 sulfur cluster binding
CTU_03690	COG5002	protein histidine kinase activity
CTU_03690	COG0784	Response regulator, receiver
CTU_03690	COG2198	Histidine kinase
CTU_03700	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CTU_03720	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_03740	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_03760	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CTU_03770	COG1137	ATPase activity
CTU_03780	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CTU_03790	COG3117	lipopolysaccharide transmembrane transporter activity
CTU_03800	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CTU_03820	COG0530	calcium, potassium:sodium antiporter activity
CTU_03830	COG1127	ABC transporter
CTU_03840	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CTU_03850	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CTU_03860	COG2854	intermembrane phospholipid transfer
CTU_03870	COG3113	response to antibiotic
CTU_03880	COG5007	Belongs to the BolA IbaG family
CTU_03900	COG3423	Transcriptional regulator
CTU_03920	COG0142	geranyltranstransferase activity
CTU_03950	COG0697	spore germination
CTU_03970	COG0642	Histidine kinase
CTU_03980	COG0745	RESPONSE REGULATOR receiver
CTU_03990	COG2027	D-alanyl-D-alanine carboxypeptidase
CTU_04000	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CTU_04010	COG1534	Rna-binding protein
CTU_04030	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CTU_04040	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CTU_04070	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CTU_04090	COG0195	Participates in both transcription termination and antitermination
CTU_04160	COG0513	Belongs to the DEAD box helicase family
CTU_04180	COG0814	amino acid
CTU_04190	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CTU_04230	COG3153	acetyltransferase
CTU_04260	COG0693	protein deglycase activity
CTU_04270	COG0702	epimerase
CTU_04280	COG0701	Predicted permease
CTU_04290	COG2823	Periplasmic or secreted lipoprotein
CTU_04320	COG3107	peptidoglycan biosynthetic process
CTU_04330	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CTU_04350	COG1063	alcohol dehydrogenase
CTU_04360	COG3775	system Galactitol-specific IIC component
CTU_04370	COG3414	Phosphotransferase system galactitol-specific IIB component
CTU_04380	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_04400	COG0191	fructose-bisphosphate aldolase activity
CTU_04430	COG1741	Belongs to the pirin family
CTU_04440	COG0583	DNA-binding transcription factor activity
CTU_04500	COG3152	Membrane
CTU_04510	COG0435	Glutathione S-transferase
CTU_04520	COG2259	Doxx family
CTU_04540	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CTU_04550	COG4575	ribosome binding
CTU_04560	COG1422	Protein of unknown function (DUF1090)
CTU_04580	COG0586	Pfam SNARE associated Golgi protein
CTU_04590	COG2186	Transcriptional regulator
CTU_04600	COG2271	Major facilitator Superfamily
CTU_04630	COG2721	sulfolactate sulfo-lyase activity
CTU_04690	COG0673	inositol 2-dehydrogenase activity
CTU_04700	COG2949	membrane
CTU_04710	COG1451	nucleotide metabolic process
CTU_04730	COG0446	pyridine nucleotide-disulphide oxidoreductase
CTU_04730	COG1902	pentaerythritol trinitrate reductase activity
CTU_04760	COG3706	GGDEF domain
CTU_04770	COG0840	transmembrane signaling receptor activity
CTU_04790	COG0840	transmembrane signaling receptor activity
CTU_04800	COG1695	Transcriptional regulator
CTU_04810	COG2375	cellular response to nickel ion
CTU_04820	COG1032	radical SAM domain protein
CTU_04830	COG0251	oxidation-reduction process
CTU_04870	COG1438	arginine binding
CTU_04890	COG1288	antiporter activity
CTU_04900	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CTU_04910	COG0549	Belongs to the carbamate kinase family
CTU_04940	COG2731	YhcH YjgK YiaL family protein
CTU_05000	COG4269	membrane
CTU_05010	COG0525	valine-tRNA ligase activity
CTU_05020	COG2927	DNA polymerase III (CHI subunit)
CTU_05040	COG0795	lipopolysaccharide-transporting ATPase activity
CTU_05050	COG0795	lipopolysaccharide-transporting ATPase activity
CTU_05090	COG1064	alcohol dehydrogenase
CTU_05170	COG2197	response regulator
CTU_05280	COG3423	Transcriptional regulator
CTU_05350	COG0371	Dehydrogenase
CTU_05400	COG2733	membrane
CTU_05410	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTU_05450	COG2182	Extracellular solute-binding protein
CTU_05460	COG1175	transmembrane transport
CTU_05470	COG3833	ABC-type maltose transport systems, permease component
CTU_05480	COG3867	Arabinogalactan endo-beta-1,4-galactanase
CTU_05490	COG1874	Beta-galactosidase
CTU_05500	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_05500	COG1263	PTS System
CTU_05520	COG1609	Transcriptional regulator
CTU_05540	COG1566	PFAM secretion protein HlyD family protein
CTU_05570	COG1609	Transcriptional regulator
CTU_05580	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_05580	COG1263	PTS System
CTU_05590	COG2723	6-phospho-beta-galactosidase activity
CTU_05610	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CTU_05620	COG0402	S-adenosylhomocysteine deaminase activity
CTU_05670	COG0840	transmembrane signaling receptor activity
CTU_05680	COG0745	RESPONSE REGULATOR receiver
CTU_05680	COG3706	GGDEF domain
CTU_05690	COG3706	GGDEF domain
CTU_05720	COG1484	DNA-dependent DNA replication
CTU_05740	COG1764	response to oxidative stress
CTU_05750	COG1846	Transcriptional regulator
CTU_05770	COG2966	Psort location CytoplasmicMembrane, score
CTU_05780	COG2197	response regulator
CTU_05790	COG2197	response regulator
CTU_05800	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CTU_05810	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CTU_05820	COG4114	ferric iron reductase
CTU_05830	COG3706	GGDEF domain
CTU_05860	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CTU_05870	COG0456	acetyltransferase
CTU_05880	COG1011	Hydrolase
CTU_05900	COG2823	Periplasmic or secreted lipoprotein
CTU_05920	COG4667	esterase of the alpha-beta hydrolase superfamily
CTU_05930	COG0084	hydrolase, TatD family'
CTU_05950	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CTU_06010	COG3726	membrane protein affecting hemolysin expression
CTU_06020	COG0560	Phosphoserine phosphatase
CTU_06030	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CTU_06100	COG1215	transferase activity, transferring glycosyl groups
CTU_06100	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CTU_06170	COG0488	(ABC) transporter
CTU_06180	COG0741	lytic transglycosylase activity
CTU_06220	COG3708	Transcriptional regulator
CTU_06220	COG2207	Transcriptional regulator
CTU_06230	COG3045	CreA protein
CTU_06240	COG0745	RESPONSE REGULATOR receiver
CTU_06250	COG2205	protein histidine kinase activity
CTU_06260	COG4452	Inner membrane protein CreD
CTU_06270	COG0745	RESPONSE REGULATOR receiver
CTU_06280	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CTU_06300	COG0527	aspartate kinase activity
CTU_06300	COG0460	homoserine dehydrogenase
CTU_06320	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CTU_06340	COG1115	amino acid carrier protein
CTU_06360	COG0521	Mo-molybdopterin cofactor biosynthetic process
CTU_06380	COG1584	GPR1 FUN34 yaaH family protein
CTU_06480	COG0583	DNA-binding transcription factor activity
CTU_06510	COG0196	riboflavin kinase activity
CTU_06540	COG1047	Peptidyl-prolyl cis-trans
CTU_06560	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_06570	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CTU_06580	COG0129	dihydroxy-acid dehydratase activity
CTU_06590	COG2271	Major facilitator Superfamily
CTU_06600	COG2814	Major facilitator Superfamily
CTU_06620	COG0800	Aldolase
CTU_06630	COG3734	2-keto-3-deoxy-galactonokinase
CTU_06670	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CTU_06700	COG0505	Belongs to the CarA family
CTU_06780	COG1280	lysine exporter protein (LysE YggA)
CTU_06840	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CTU_06850	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CTU_06860	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CTU_06890	COG0564	pseudouridine synthase activity
CTU_06910	COG0417	DNA replication proofreading
CTU_06930	COG0235	Class ii aldolase
CTU_06940	COG2160	L-arabinose isomerase activity
CTU_06950	COG1069	ribulokinase activity
CTU_06960	COG4977	sequence-specific DNA binding
CTU_06970	COG0586	Pfam SNARE associated Golgi protein
CTU_06990	COG1178	ABC-type Fe3 transport system permease component
CTU_07000	COG4143	(ABC) transporter
CTU_07030	COG2814	Major facilitator Superfamily
CTU_07110	COG0028	Belongs to the TPP enzyme family
CTU_07130	COG1609	Transcriptional regulator
CTU_07170	COG0768	penicillin binding
CTU_07190	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CTU_07220	COG0772	Belongs to the SEDS family
CTU_07250	COG1181	Belongs to the D-alanine--D-alanine ligase family
CTU_07270	COG0849	cell division
CTU_07280	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CTU_07330	COG0494	nUDIX hydrolase
CTU_07360	COG0237	dephospho-CoA kinase activity
CTU_07370	COG0516	GMP reductase activity
CTU_07380	COG1459	type II secretion system
CTU_07390	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CTU_07400	COG4969	Belongs to the N-Me-Phe pilin family
CTU_07420	COG3023	N-Acetylmuramoyl-L-alanine amidase
CTU_07430	COG3725	Membrane protein required for beta-lactamase induction
CTU_07440	COG3940	Belongs to the glycosyl hydrolase 43 family
CTU_07450	COG2211	Major facilitator Superfamily
CTU_07460	COG1113	amino acid transport
CTU_07480	COG2186	Transcriptional regulator
CTU_07490	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CTU_07500	COG0508	dehydrogenase complex catalyzes the overall conversion of
CTU_07510	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CTU_07530	COG3064	Membrane
CTU_07620	COG2132	Multicopper oxidase
CTU_07630	COG4993	Dehydrogenase
CTU_07650	COG0288	reversible hydration of carbon dioxide
CTU_07660	COG1131	(ABC) transporter
CTU_07670	COG0842	Transport permease protein
CTU_07680	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_07690	COG0726	polysaccharide deacetylase
CTU_07730	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CTU_07740	COG0617	tRNA 3'-terminal CCA addition
CTU_07760	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CTU_07780	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CTU_07790	COG1643	Atp-dependent helicase
CTU_07800	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CTU_07810	COG4774	siderophore transport
CTU_07820	COG1120	ATPase activity
CTU_07830	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CTU_07840	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CTU_07880	COG2860	membrane
CTU_07920	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CTU_07960	COG0024	Methionine aminopeptidase
CTU_08010	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CTU_08030	COG0575	Belongs to the CDS family
CTU_08040	COG0750	zinc metalloprotease
CTU_08070	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CTU_08120	COG0587	DNA-directed DNA polymerase activity
CTU_08160	COG0346	lactoylglutathione lyase activity
CTU_08190	COG4568	rho-dependent transcription termination
CTU_08210	COG4681	YaeQ
CTU_08220	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CTU_08230	COG3015	lipoprotein NlpE involved in copper resistance
CTU_08250	COG1720	tRNA m6t6A37 methyltransferase activity
CTU_08280	COG2011	ABC-type metal ion transport system permease component
CTU_08300	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CTU_08310	COG0656	L-ascorbic acid biosynthetic process
CTU_08320	COG0583	DNA-binding transcription factor activity
CTU_08330	COG3021	interspecies interaction between organisms
CTU_08340	COG2226	methyltransferase
CTU_08350	COG1388	LysM domain
CTU_08350	COG0741	lytic transglycosylase activity
CTU_08370	COG2226	methyltransferase
CTU_08390	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CTU_08400	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CTU_08430	COG0121	glutamine amidotransferase
CTU_08440	COG3034	peptidoglycan biosynthetic process
CTU_08470	COG1690	Belongs to the RtcB family
CTU_08480	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CTU_08490	COG2195	Cleaves the N-terminal amino acid of tripeptides
CTU_08530	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CTU_08660	COG2195	Cleaves the N-terminal amino acid of tripeptides
CTU_08800	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CTU_08810	COG0251	oxidation-reduction process
CTU_08820	COG1309	transcriptional regulator
CTU_08880	COG2223	nitrite transmembrane transporter activity
CTU_08930	COG3718	enzyme involved in inositol metabolism
CTU_08950	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTU_08970	COG3962	Belongs to the TPP enzyme family
CTU_08990	COG1082	Xylose isomerase domain protein TIM barrel
CTU_09010	COG2814	Major facilitator Superfamily
CTU_09050	COG2011	ABC-type metal ion transport system permease component
CTU_09060	COG1464	Belongs to the NlpA lipoprotein family
CTU_09070	COG3387	PFAM Glycoside hydrolase 15-related
CTU_09080	COG3479	Phenolic acid decarboxylase
CTU_09120	COG0583	DNA-binding transcription factor activity
CTU_09130	COG0628	permease
CTU_09140	COG0659	secondary active sulfate transmembrane transporter activity
CTU_09150	COG0288	reversible hydration of carbon dioxide
CTU_09170	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_09190	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CTU_09210	COG0494	nUDIX hydrolase
CTU_09220	COG1349	DNA-binding transcription factor activity
CTU_09250	COG1560	Kdo2-lipid A biosynthetic process
CTU_09260	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CTU_09280	COG0300	oxidoreductase activity
CTU_09290	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
CTU_09320	COG1271	oxidase subunit
CTU_09340	COG3383	formate dehydrogenase (NAD+) activity
CTU_09360	COG0833	amino acid
CTU_09370	COG2040	homocysteine
CTU_09380	COG4521	taurine ABC transporter
CTU_09400	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTU_09410	COG2175	clavaminate synthase activity
CTU_09440	COG0113	porphobilinogen synthase activity
CTU_09450	COG1546	Belongs to the CinA family
CTU_09470	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CTU_09480	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CTU_09500	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CTU_09540	COG1181	Belongs to the D-alanine--D-alanine ligase family
CTU_09560	COG2814	Major facilitator Superfamily
CTU_09590	COG2814	Major facilitator Superfamily
CTU_09600	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CTU_09620	COG2323	membrane
CTU_09640	COG3416	Protein conserved in bacteria
CTU_09680	COG4126	flavin adenine dinucleotide binding
CTU_09710	COG1940	carbohydrate kinase activity
CTU_09720	COG0419	ATPase involved in DNA repair
CTU_09730	COG0420	3'-5' exonuclease activity
CTU_09760	COG5002	protein histidine kinase activity
CTU_09770	COG1114	Component of the transport system for branched-chain amino acids
CTU_09790	COG0366	Alpha amylase catalytic
CTU_09850	COG1862	Preprotein translocase
CTU_09860	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CTU_09870	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CTU_09880	COG3248	Nucleoside-binding outer membrane protein
CTU_09890	COG4238	major outer membrane lipoprotein
CTU_09910	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CTU_09910	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CTU_09940	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CTU_09950	COG0667	Aldo Keto reductase
CTU_09970	COG0142	geranyltranstransferase activity
CTU_10010	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CTU_10030	COG2814	Major facilitator Superfamily
CTU_10050	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CTU_10060	COG1845	cytochrome c oxidase, subunit III
CTU_10070	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CTU_10080	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CTU_10090	COG0443	Heat shock 70 kDa protein
CTU_10110	COG2223	nitrite transmembrane transporter activity
CTU_10120	COG3056	Lipoprotein
CTU_10130	COG0271	Belongs to the BolA IbaG family
CTU_10190	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CTU_10200	COG0776	regulation of translation
CTU_10210	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CTU_10220	COG1555	photosystem II stabilization
CTU_10230	COG0824	Thioesterase
CTU_10270	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CTU_10300	COG4533	DNA binding
CTU_10360	COG1522	sequence-specific DNA binding
CTU_10370	COG1132	(ABC) transporter
CTU_10380	COG1132	(ABC) transporter
CTU_10390	COG0347	Belongs to the P(II) protein family
CTU_10400	COG0004	ammonium transporteR
CTU_10410	COG1946	Acyl-CoA thioesterase
CTU_10420	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CTU_10430	COG3695	enzyme binding
CTU_10470	COG1857	crispr-associated protein
CTU_10500	COG1518	maintenance of DNA repeat elements
CTU_10510	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CTU_10570	COG1214	PFAM Peptidase M22, glycoprotease
CTU_10570	COG0456	acetyltransferase
CTU_10580	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CTU_10590	COG2011	ABC-type metal ion transport system permease component
CTU_10630	COG0840	transmembrane signaling receptor activity
CTU_10660	COG0110	maltose O-acetyltransferase activity
CTU_10690	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CTU_10700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTU_10710	COG1309	transcriptional regulator
CTU_10720	COG3264	Mechanosensitive ion channel
CTU_10720	COG1196	nuclear chromosome segregation
CTU_10740	COG3923	Primosomal replication protein n
CTU_10750	COG2832	Protein of unknown function (DUF454)
CTU_10820	COG3835	regulator
CTU_10830	COG2610	gluconate transmembrane transporter activity
CTU_10840	COG1929	Belongs to the glycerate kinase type-1 family
CTU_10860	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTU_10870	COG4651	solute:proton antiporter activity
CTU_10870	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CTU_10880	COG0737	Belongs to the 5'-nucleotidase family
CTU_10900	COG3735	TraB family
CTU_10960	COG1585	Membrane protein implicated in regulation of membrane protease activity
CTU_10970	COG0330	HflC and HflK could
CTU_10980	COG3118	belongs to the thioredoxin family
CTU_10990	COG0300	oxidoreductase activity
CTU_11000	COG2755	lipolytic protein G-D-S-L family
CTU_11010	COG4181	ATPase activity
CTU_11020	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CTU_11060	COG0626	cystathionine gamma-synthase activity
CTU_11070	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CTU_11080	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CTU_11100	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CTU_11120	COG1609	Transcriptional regulator
CTU_11130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_11130	COG1263	PTS System
CTU_11130	COG2190	(PTS) system
CTU_11140	COG2501	S4 domain
CTU_11160	COG0582	viral genome integration into host DNA
CTU_11290	COG3723	Recombinational DNA repair protein, rece pathway
CTU_11450	COG0305	Participates in initiation and elongation during chromosome replication
CTU_11570	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
CTU_11630	COG3179	chitinase
CTU_11700	COG1783	phage Terminase large subunit
CTU_11930	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CTU_11950	COG0386	Belongs to the glutathione peroxidase family
CTU_11960	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_11970	COG1733	regulation of RNA biosynthetic process
CTU_12010	COG0640	Transcriptional regulator
CTU_12020	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CTU_12130	COG3121	Chaperone
CTU_12140	COG3188	usher protein
CTU_12230	COG3501	Rhs element vgr protein
CTU_12280	COG0840	transmembrane signaling receptor activity
CTU_12310	COG2977	Belongs to the P-Pant transferase superfamily
CTU_12320	COG4771	TonB-dependent receptor
CTU_12330	COG2382	esterase
CTU_12340	COG3251	PFAM MbtH domain protein
CTU_12350	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CTU_12350	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CTU_12390	COG0436	Aminotransferase
CTU_12400	COG0583	DNA-binding transcription factor activity
CTU_12410	COG0450	alkyl hydroperoxide reductase
CTU_12420	COG3634	alkyl hydroperoxide reductase activity
CTU_12430	COG0589	response to stress
CTU_12440	COG1063	alcohol dehydrogenase
CTU_12450	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CTU_12470	COG1653	transport
CTU_12510	COG0366	Alpha amylase catalytic
CTU_12520	COG0366	Alpha amylase catalytic
CTU_12540	COG3719	Belongs to the RNase T2 family
CTU_12550	COG3069	C4-dicarboxylate transmembrane transporter activity
CTU_12570	COG1278	Cold shock
CTU_12590	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CTU_12620	COG0583	DNA-binding transcription factor activity
CTU_12650	COG1686	Belongs to the peptidase S11 family
CTU_12660	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CTU_12670	COG0772	Belongs to the SEDS family
CTU_12680	COG0768	penicillin binding
CTU_12700	COG0799	negative regulation of ribosome biogenesis
CTU_12730	COG1466	dna polymerase III delta subunit
CTU_12760	COG2888	peptidyl-tyrosine sulfation
CTU_12770	COG1126	abc transporter atp-binding protein
CTU_12780	COG0765	amino acid transport
CTU_12790	COG0765	amino acid transport
CTU_12810	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CTU_12820	COG4535	Mg2 and Co2 transporter CorC
CTU_12840	COG1702	phosphate starvation-inducible protein PhoH
CTU_12870	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTU_12880	COG0367	asparagine synthase
CTU_12890	COG0647	UMP catabolic process
CTU_12900	COG1846	Transcriptional regulator
CTU_12900	COG1940	carbohydrate kinase activity
CTU_12910	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CTU_13010	COG0735	belongs to the Fur family
CTU_13020	COG0716	FMN binding
CTU_13040	COG0596	Alpha beta hydrolase
CTU_13060	COG0033	Phosphoglucomutase
CTU_13070	COG0531	amino acid
CTU_13080	COG1982	Orn Lys Arg decarboxylase major
CTU_13100	COG0745	RESPONSE REGULATOR receiver
CTU_13110	COG2205	protein histidine kinase activity
CTU_13130	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CTU_13160	COG3272	Protein of unknown function (DUF1722)
CTU_13170	COG0415	Belongs to the DNA photolyase family
CTU_13180	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CTU_13190	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CTU_13200	COG1984	allophanate hydrolase subunit 2
CTU_13270	COG0372	Belongs to the citrate synthase family
CTU_13280	COG2009	succinate dehydrogenase
CTU_13290	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CTU_13300	COG1053	succinate dehydrogenase
CTU_13310	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CTU_13320	COG0567	Dehydrogenase, E1 component
CTU_13330	COG0508	dehydrogenase complex catalyzes the overall conversion of
CTU_13350	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CTU_13360	COG2188	Transcriptional regulator
CTU_13370	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_13370	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CTU_13370	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CTU_13380	COG0383	alpha-mannosidase activity
CTU_13390	COG1271	oxidase subunit
CTU_13400	COG1294	oxidase, subunit
CTU_13410	COG4890	Cyd operon protein YbgT
CTU_13420	COG3790	cyd operon protein YbgE
CTU_13430	COG0824	Thioesterase
CTU_13440	COG0811	peptide transport
CTU_13450	COG0848	biopolymer transport protein
CTU_13460	COG3064	Membrane
CTU_13480	COG2885	chlorophyll binding
CTU_13490	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CTU_13500	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CTU_13510	COG3201	nicotinamide mononucleotide transporter
CTU_13540	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CTU_13560	COG2017	converts alpha-aldose to the beta-anomer
CTU_13580	COG1085	galactose-1-phosphate uridylyltransferase
CTU_13600	COG1119	ATPase activity
CTU_13610	COG3585	molybdate ion transport
CTU_13610	COG2005	Transcriptional regulator
CTU_13630	COG0725	ABC transporter, periplasmic molybdate-binding protein
CTU_13640	COG4149	molybdate abc transporter
CTU_13660	COG0561	phosphatase activity
CTU_13680	COG4677	pectinesterase activity
CTU_13690	COG1881	PFAM PEBP family protein
CTU_13740	COG2226	methyltransferase
CTU_13780	COG0556	nucleotide-excision repair
CTU_13790	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CTU_13820	COG0521	Mo-molybdopterin cofactor biosynthetic process
CTU_13840	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CTU_13850	COG0314	molybdopterin synthase activity
CTU_13860	COG0670	Belongs to the BI1 family
CTU_13870	COG0392	lysyltransferase activity
CTU_13880	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CTU_13890	COG3568	Endonuclease Exonuclease Phosphatase
CTU_13910	COG0842	Transport permease protein
CTU_13920	COG0842	Transport permease protein
CTU_13930	COG1131	(ABC) transporter
CTU_13950	COG1309	transcriptional regulator
CTU_13960	COG0513	Belongs to the DEAD box helicase family
CTU_14020	COG3121	Chaperone
CTU_14030	COG3539	Fimbrial protein
CTU_14040	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CTU_14060	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CTU_14070	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTU_14090	COG0668	transmembrane transport
CTU_14100	COG1126	abc transporter atp-binding protein
CTU_14110	COG0765	amino acid transport
CTU_14120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTU_14160	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CTU_14170	COG2194	sulfuric ester hydrolase activity
CTU_14190	COG1321	iron dependent repressor
CTU_14200	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CTU_14210	COG2814	Major facilitator Superfamily
CTU_14230	COG2723	6-phospho-beta-galactosidase activity
CTU_14240	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CTU_14250	COG2188	Transcriptional regulator
CTU_14260	COG1376	ErfK ybiS ycfS ynhG family protein
CTU_14270	COG0488	(ABC) transporter
CTU_14280	COG3210	domain, Protein
CTU_14300	COG2271	Major facilitator Superfamily
CTU_14310	COG1609	Transcriptional regulator
CTU_14320	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CTU_14330	COG0303	'Molybdopterin
CTU_14350	COG0747	negative chemotaxis
CTU_14370	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CTU_14390	COG2133	pyrroloquinoline quinone binding
CTU_14400	COG0625	glutathione transferase activity
CTU_14410	COG1686	Belongs to the peptidase S11 family
CTU_14420	COG1349	DNA-binding transcription factor activity
CTU_14430	COG0671	phosphoesterase, PA-phosphatase related
CTU_14450	COG2814	Major facilitator Superfamily
CTU_14460	COG0561	phosphatase activity
CTU_14480	COG0738	Major facilitator superfamily
CTU_14490	COG3226	Transcriptional regulator
CTU_14550	COG4695	Portal protein
CTU_14560	COG4695	Portal protein
CTU_14620	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CTU_14630	COG3842	ATPase activity
CTU_14640	COG1176	ABC-type spermidine putrescine transport system, permease component I
CTU_14650	COG1177	transmembrane transport
CTU_14690	COG2211	Major facilitator Superfamily
CTU_14720	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTU_14730	COG4160	amino acid transport
CTU_14740	COG4215	(ABC) transporter
CTU_14750	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTU_14760	COG1126	abc transporter atp-binding protein
CTU_14790	COG3023	N-Acetylmuramoyl-L-alanine amidase
CTU_14800	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CTU_14810	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CTU_14820	COG0028	Belongs to the TPP enzyme family
CTU_14830	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTU_14850	COG2431	L-lysine efflux transmembrane transporter activity
CTU_14860	COG3593	DNA synthesis involved in DNA repair
CTU_14870	COG2990	Protein conserved in bacteria
CTU_14880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTU_14900	COG1278	Cold shock
CTU_14920	COG0542	response to heat
CTU_14970	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CTU_14980	COG4988	ABC transporter
CTU_14990	COG0492	ferredoxin-NADP+ reductase activity
CTU_15040	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CTU_15060	COG0477	Major facilitator Superfamily
CTU_15070	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CTU_15080	COG1882	Formate acetyltransferase
CTU_15090	COG2116	formate transmembrane transporter activity
CTU_15110	COG1944	ATP diphosphatase activity
CTU_15120	COG2323	membrane
CTU_15150	COG0501	Belongs to the peptidase M48B family
CTU_15160	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CTU_15170	COG0539	negative regulation of cytoplasmic translation
CTU_15190	COG0658	competence protein
CTU_15190	COG2333	competence protein COMEC
CTU_15220	COG3214	Protein conserved in bacteria
CTU_15250	COG1522	sequence-specific DNA binding
CTU_15270	COG3173	Aminoglycoside phosphotransferase
CTU_15280	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CTU_15290	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CTU_15310	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CTU_15330	COG2989	Protein conserved in bacteria
CTU_15340	COG3108	Peptidase M15
CTU_15350	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CTU_15360	COG1448	Aminotransferase
CTU_15420	COG1595	DNA-templated transcription, initiation
CTU_15440	COG0753	catalase activity
CTU_15450	COG0308	aminopeptidase N
CTU_15460	COG1116	anion transmembrane transporter activity
CTU_15470	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTU_15490	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CTU_15500	COG0431	NADPH-dependent FMN reductase
CTU_15530	COG3217	Mosc domain protein beta barrel domain protein
CTU_15530	COG0633	Ferredoxin
CTU_15550	COG0488	(ABC) transporter
CTU_15560	COG2995	paraquat-inducible protein a
CTU_15570	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CTU_15570	COG3008	intermembrane lipid transfer
CTU_15580	COG3009	Protein conserved in bacteria
CTU_15590	COG3130	regulation of translation
CTU_15610	COG1067	ATP-dependent peptidase activity
CTU_15670	COG3070	regulator of competence-specific genes
CTU_15680	COG1289	transmembrane transporter activity
CTU_15690	COG3304	Inner membrane component domain
CTU_15710	COG0210	DNA helicase
CTU_15730	COG1832	CoA-binding protein
CTU_15770	COG2920	part of a sulfur-relay system
CTU_15780	COG0670	Belongs to the BI1 family
CTU_15790	COG4166	transmembrane transport
CTU_15870	COG2233	PERMEase
CTU_15940	COG1309	transcriptional regulator
CTU_15970	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CTU_15970	COG0506	proline dehydrogenase activity
CTU_15970	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CTU_15990	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CTU_16010	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CTU_16020	COG0672	)-iron permease
CTU_16030	COG2822	iron ion transport
CTU_16050	COG1702	phosphate starvation-inducible protein PhoH
CTU_16070	COG0243	molybdopterin cofactor binding
CTU_16090	COG3121	Chaperone
CTU_16100	COG3188	usher protein
CTU_16140	COG3381	protein complex oligomerization
CTU_16250	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CTU_16290	COG5645	(Lipo)protein
CTU_16310	COG1560	Kdo2-lipid A biosynthetic process
CTU_16350	COG3038	cytochrome b561
CTU_16410	COG2999	glutathione oxidoreductase activity
CTU_16430	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CTU_16450	COG0673	inositol 2-dehydrogenase activity
CTU_16460	COG0728	peptidoglycan biosynthetic process
CTU_16470	COG3418	PFAM FlgN family protein
CTU_16500	COG1815	bacterial-type flagellum-dependent cell motility
CTU_16510	COG1558	bacterial-type flagellum-dependent cell motility
CTU_16520	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CTU_16530	COG1749	Flagellar hook protein flgE
CTU_16550	COG4786	Flagellar basal body rod
CTU_16590	COG1256	bacterial-type flagellum assembly
CTU_16610	COG2814	Major facilitator Superfamily
CTU_16630	COG1530	ribonuclease E activity
CTU_16640	COG0564	pseudouridine synthase activity
CTU_16660	COG0424	maF-like protein
CTU_16670	COG1399	metal-binding, possibly nucleic acid-binding protein
CTU_16720	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_16740	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CTU_16750	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CTU_16760	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CTU_16780	COG0470	DNA polymerase III
CTU_16790	COG0084	hydrolase, TatD family'
CTU_16800	COG1263	PTS System
CTU_16800	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_16810	COG4773	Receptor
CTU_16820	COG0537	adenosine 5'-monophosphoramidase activity
CTU_16830	COG5633	Lipoprotein
CTU_16850	COG0510	thiamine kinase activity
CTU_16880	COG1252	NADH dehydrogenase
CTU_16890	COG3134	Outer membrane lipoprotein
CTU_16910	COG1309	transcriptional regulator
CTU_16930	COG1388	LysM domain
CTU_16930	COG1376	ErfK ybiS ycfS ynhG family protein
CTU_16940	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CTU_16950	COG4591	ABC-type transport system involved in lipoprotein release permease component
CTU_16970	COG4591	ABC-type transport system involved in lipoprotein release permease component
CTU_16990	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CTU_17000	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CTU_17010	COG1177	transmembrane transport
CTU_17020	COG1176	ABC-type spermidine putrescine transport system, permease component I
CTU_17050	COG2850	peptidyl-arginine hydroxylation
CTU_17070	COG0745	RESPONSE REGULATOR receiver
CTU_17080	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CTU_17110	COG0840	transmembrane signaling receptor activity
CTU_17130	COG1187	pseudouridine synthase activity
CTU_17140	COG0538	isocitrate dehydrogenase activity
CTU_17160	COG0582	viral genome integration into host DNA
CTU_17230	COG1802	Transcriptional regulator
CTU_17230	COG4626	Terminase
CTU_17250	COG4725	Belongs to the MT-A70-like family
CTU_17280	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
CTU_17290	COG3646	Phage regulatory protein
CTU_17290	COG3645	SOS response
CTU_17300	COG1403	HNH endonuclease
CTU_17310	COG0484	heat shock protein binding
CTU_17360	COG3179	chitinase
CTU_17440	COG1802	Transcriptional regulator
CTU_17440	COG4626	Terminase
CTU_17450	COG4695	Portal protein
CTU_17460	COG0740	serine-type endopeptidase activity
CTU_17660	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CTU_17670	COG1537	nuclear-transcribed mRNA catabolic process, no-go decay
CTU_17690	COG0538	isocitrate dehydrogenase activity
CTU_17710	COG0702	epimerase
CTU_17720	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CTU_17780	COG0840	transmembrane signaling receptor activity
CTU_17810	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CTU_17820	COG1278	Cold shock
CTU_17860	COG0835	chemotaxis
CTU_17860	COG0784	Response regulator, receiver
CTU_17890	COG2990	Protein conserved in bacteria
CTU_17920	COG3189	MarR family transcriptional regulator
CTU_17930	COG0504	CTP synthase activity
CTU_17940	COG2807	transmembrane transport
CTU_17960	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CTU_17970	COG3729	General stress protein
CTU_17980	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CTU_17990	COG2718	Belongs to the UPF0229 family
CTU_18000	COG2766	serine protein kinase
CTU_18010	COG3713	MltA-interacting MipA family protein
CTU_18030	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CTU_18050	COG3139	Protein of unknown function (DUF1315)
CTU_18060	COG1335	isochorismatase
CTU_18070	COG0252	asparaginase activity
CTU_18080	COG0616	signal peptide processing
CTU_18090	COG0778	Nitroreductase
CTU_18110	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CTU_18130	COG0494	nUDIX hydrolase
CTU_18140	COG0708	Exodeoxyribonuclease III
CTU_18210	COG3678	ATP-independent chaperone mediated protein folding
CTU_18230	COG0322	excinuclease ABC activity
CTU_18260	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CTU_18270	COG0753	catalase activity
CTU_18300	COG1988	membrane-bound metal-dependent
CTU_18310	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_18320	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTU_18360	COG1105	Belongs to the carbohydrate kinase PfkB family
CTU_18370	COG3137	Salt-induced outer membrane protein
CTU_18500	COG0072	phenylalanine-tRNA ligase activity
CTU_18500	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CTU_18520	COG4139	cobalamin transport
CTU_18530	COG0386	Belongs to the glutathione peroxidase family
CTU_18550	COG0791	NLP P60 protein
CTU_18570	COG1486	melibiose metabolic process
CTU_18580	COG1609	Transcriptional regulator
CTU_18610	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CTU_18640	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CTU_18640	COG0574	Belongs to the PEP-utilizing enzyme family
CTU_18650	COG2211	Major facilitator Superfamily
CTU_18660	COG1472	Belongs to the glycosyl hydrolase 3 family
CTU_18670	COG0628	permease
CTU_18680	COG0277	FAD linked oxidase domain protein
CTU_18680	COG0247	lactate metabolic process
CTU_18690	COG2050	protein possibly involved in aromatic compounds catabolism
CTU_18710	COG0316	Belongs to the HesB IscA family
CTU_18720	COG0719	Fe-S assembly protein
CTU_18730	COG0396	ATPase activity
CTU_18740	COG0719	Fe-S assembly protein
CTU_18770	COG1376	ErfK ybiS ycfS ynhG family protein
CTU_18810	COG3468	outer membrane autotransporter barrel domain protein
CTU_18820	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CTU_18830	COG1012	belongs to the aldehyde dehydrogenase family
CTU_18840	COG1396	sequence-specific DNA binding
CTU_18840	COG1917	Cupin 2, conserved barrel domain protein
CTU_18850	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CTU_18860	COG0174	glutamine synthetase
CTU_18870	COG0531	amino acid
CTU_18880	COG3604	Transcriptional regulator
CTU_18890	COG0309	Hydrogenase expression formation protein (HypE)
CTU_18900	COG0409	Hydrogenase expression formation protein
CTU_18910	COG0298	carbon dioxide binding
CTU_18920	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CTU_18930	COG0375	protein maturation
CTU_18950	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CTU_18960	COG0651	ATP synthesis coupled electron transport
CTU_18970	COG0650	Formate hydrogenlyase subunit 4
CTU_18980	COG3261	NADH dehydrogenase
CTU_18980	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CTU_18990	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CTU_19000	COG3260	NADH ubiquinone oxidoreductase 20
CTU_19020	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CTU_19040	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CTU_19050	COG3383	formate dehydrogenase (NAD+) activity
CTU_19060	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CTU_19070	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CTU_19090	COG3383	formate dehydrogenase (NAD+) activity
CTU_19100	COG3383	formate dehydrogenase (NAD+) activity
CTU_19120	COG2814	Major facilitator Superfamily
CTU_19190	COG0583	DNA-binding transcription factor activity
CTU_19230	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CTU_19320	COG2885	chlorophyll binding
CTU_19350	COG3501	Rhs element vgr protein
CTU_19690	COG0307	riboflavin synthase, alpha
CTU_19700	COG1609	Transcriptional regulator
CTU_19710	COG2723	6-phospho-beta-galactosidase activity
CTU_19720	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CTU_19730	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CTU_19740	COG2814	Major facilitator Superfamily
CTU_19750	COG0583	DNA-binding transcription factor activity
CTU_19770	COG2814	Major facilitator Superfamily
CTU_19780	COG0791	NLP P60 protein
CTU_19800	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CTU_19820	COG0346	lactoylglutathione lyase activity
CTU_19830	COG1902	pentaerythritol trinitrate reductase activity
CTU_19840	COG1309	transcriptional regulator
CTU_19860	COG3313	Fe-S protein
CTU_19870	COG4989	oxidoreductase activity
CTU_19880	COG2032	superoxide dismutase activity
CTU_19890	COG1289	transmembrane transporter activity
CTU_19900	COG1566	PFAM secretion protein HlyD family protein
CTU_19930	COG3133	Outer membrane lipoprotein
CTU_19980	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CTU_19990	COG0625	glutathione transferase activity
CTU_20010	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CTU_20110	COG0673	inositol 2-dehydrogenase activity
CTU_20120	COG0385	Bile acid
CTU_20130	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CTU_20140	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CTU_20150	COG1263	PTS System
CTU_20150	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_20170	COG1609	Transcriptional regulator
CTU_20180	COG5339	Protein conserved in bacteria
CTU_20210	COG0114	fumarate hydratase activity
CTU_20230	COG2205	protein histidine kinase activity
CTU_20250	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_20260	COG0745	RESPONSE REGULATOR receiver
CTU_20280	COG0531	amino acid
CTU_20300	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CTU_20310	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CTU_20330	COG0589	response to stress
CTU_20340	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CTU_20350	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CTU_20370	COG2840	Smr protein MutS2
CTU_20380	COG0561	phosphatase activity
CTU_20400	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CTU_20410	COG4172	Belongs to the ABC transporter superfamily
CTU_20430	COG0601	transmembrane transport
CTU_20440	COG0747	negative chemotaxis
CTU_20470	COG2211	Major facilitator Superfamily
CTU_20480	COG2076	Multidrug Resistance protein
CTU_20510	COG1294	oxidase, subunit
CTU_20520	COG1271	oxidase subunit
CTU_20530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTU_20540	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CTU_20550	COG3842	ATPase activity
CTU_20560	COG1176	ABC-type spermidine putrescine transport system, permease component I
CTU_20570	COG1177	transmembrane transport
CTU_20580	COG1012	belongs to the aldehyde dehydrogenase family
CTU_20590	COG0582	viral genome integration into host DNA
CTU_20620	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CTU_20670	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
CTU_20690	COG0243	molybdopterin cofactor binding
CTU_20700	COG0437	4 iron, 4 sulfur cluster binding
CTU_20710	COG3302	dmso reductase anchor subunit
CTU_20740	COG0840	transmembrane signaling receptor activity
CTU_20770	COG4677	pectinesterase activity
CTU_20820	COG0747	negative chemotaxis
CTU_20840	COG2084	Dehydrogenase
CTU_20850	COG3238	Protein conserved in bacteria
CTU_20860	COG1247	-acetyltransferase
CTU_20880	COG2130	NADP-dependent
CTU_20920	COG0601	transmembrane transport
CTU_20930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CTU_20950	COG1802	Transcriptional regulator
CTU_21020	COG3093	addiction module antidote protein HigA
CTU_21030	COG4772	TonB-dependent receptor
CTU_21050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTU_21060	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CTU_21120	COG0778	Nitroreductase
CTU_21140	COG3546	catalase activity
CTU_21150	COG3685	Protein conserved in bacteria
CTU_21170	COG2162	N-hydroxyarylamine O-acetyltransferase activity
CTU_21180	COG2207	Transcriptional regulator
CTU_21200	COG1064	alcohol dehydrogenase
CTU_21210	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_21230	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTU_21270	COG4221	oxidoreductase activity
CTU_21280	COG2207	Transcriptional regulator
CTU_21320	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CTU_21360	COG0791	NLP P60 protein
CTU_21380	COG0583	DNA-binding transcription factor activity
CTU_21400	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CTU_21400	COG0456	acetyltransferase
CTU_21450	COG0745	RESPONSE REGULATOR receiver
CTU_21540	COG2205	protein histidine kinase activity
CTU_21540	COG0784	Response regulator, receiver
CTU_21540	COG5002	protein histidine kinase activity
CTU_21600	COG5002	protein histidine kinase activity
CTU_21600	COG3447	MASE1 domain protein
CTU_21600	COG5001	Diguanylate cyclase
CTU_21620	COG2199	diguanylate cyclase activity
CTU_21660	COG1012	belongs to the aldehyde dehydrogenase family
CTU_21670	COG0583	DNA-binding transcription factor activity
CTU_21690	COG0039	L-malate dehydrogenase activity
CTU_21720	COG2814	Major facilitator Superfamily
CTU_21730	COG1846	Transcriptional regulator
CTU_21740	COG4977	sequence-specific DNA binding
CTU_21770	COG2814	Major facilitator Superfamily
CTU_21810	COG1129	ABC transporter
CTU_21880	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CTU_21900	COG3729	General stress protein
CTU_21920	COG3781	membrane
CTU_21940	COG0339	signal peptide processing
CTU_21950	COG4221	oxidoreductase activity
CTU_21960	COG1802	Transcriptional regulator
CTU_21990	COG0246	Mannitol dehydrogenase
CTU_22000	COG0477	Major facilitator Superfamily
CTU_22010	COG1063	alcohol dehydrogenase
CTU_22020	COG2271	Major facilitator Superfamily
CTU_22030	COG4948	Mandelate Racemase Muconate Lactonizing
CTU_22060	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CTU_22090	COG0243	molybdopterin cofactor binding
CTU_22100	COG0243	molybdopterin cofactor binding
CTU_22110	COG0437	4 iron, 4 sulfur cluster binding
CTU_22120	COG3302	dmso reductase anchor subunit
CTU_22130	COG3381	protein complex oligomerization
CTU_22140	COG3136	membrane protein required for alginate biosynthesis
CTU_22190	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CTU_22200	COG1940	carbohydrate kinase activity
CTU_22210	COG0583	DNA-binding transcription factor activity
CTU_22220	COG2814	Major facilitator Superfamily
CTU_22230	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CTU_22240	COG3591	Belongs to the peptidase S1B family
CTU_22300	COG0826	peptidase U32
CTU_22310	COG1396	sequence-specific DNA binding
CTU_22320	COG3135	benzoate transporter
CTU_22340	COG0500	methyltransferase
CTU_22360	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CTU_22370	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CTU_22400	COG5383	Protein conserved in bacteria
CTU_22410	COG0583	DNA-binding transcription factor activity
CTU_22420	COG1902	pentaerythritol trinitrate reductase activity
CTU_22430	COG3685	Protein conserved in bacteria
CTU_22440	COG0840	transmembrane signaling receptor activity
CTU_22520	COG0477	Major facilitator Superfamily
CTU_22530	COG3038	cytochrome b561
CTU_22540	COG2755	lipolytic protein G-D-S-L family
CTU_22540	COG0657	acetylesterase activity
CTU_22550	COG1012	belongs to the aldehyde dehydrogenase family
CTU_22560	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CTU_22640	COG1643	Atp-dependent helicase
CTU_22670	COG3784	Protein of unknown function (DUF1318)
CTU_22690	COG2911	Protein conserved in bacteria
CTU_22700	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CTU_22710	COG3187	Heat shock protein
CTU_22720	COG3042	response to heat
CTU_22730	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CTU_22730	COG1013	pyruvate-flavodoxin oxidoreductase activity
CTU_22730	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CTU_22730	COG0674	pyruvate-flavodoxin oxidoreductase activity
CTU_22770	COG1012	belongs to the aldehyde dehydrogenase family
CTU_22780	COG3284	Transcriptional regulator
CTU_22800	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_22920	COG3300	MHYT domain
CTU_22920	COG5001	Diguanylate cyclase
CTU_22940	COG3729	General stress protein
CTU_22990	COG4166	transmembrane transport
CTU_23000	COG2866	Carboxypeptidase
CTU_23010	COG4948	Mandelate Racemase Muconate Lactonizing
CTU_23030	COG3283	Transcriptional regulator of aromatic amino acids metabolism
CTU_23050	COG3106	COG3106 Predicted ATPase
CTU_23060	COG1609	Transcriptional regulator
CTU_23080	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTU_23090	COG1554	hydrolase, family 65, central catalytic
CTU_23100	COG0673	inositol 2-dehydrogenase activity
CTU_23110	COG1082	Xylose isomerase domain protein TIM barrel
CTU_23120	COG1063	alcohol dehydrogenase
CTU_23130	COG0395	ABC-type sugar transport system, permease component
CTU_23140	COG1175	transmembrane transport
CTU_23150	COG1653	transport
CTU_23160	COG0366	Alpha amylase catalytic
CTU_23180	COG1983	PspC domain protein
CTU_23200	COG1842	Phage shock protein A
CTU_23210	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CTU_23230	COG4168	peptide transport system, permease
CTU_23240	COG4171	peptide transport system, permease
CTU_23260	COG4172	Belongs to the ABC transporter superfamily
CTU_23280	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CTU_23280	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CTU_23300	COG5001	Diguanylate cyclase
CTU_23310	COG1024	Enoyl-CoA hydratase
CTU_23340	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CTU_23360	COG1349	DNA-binding transcription factor activity
CTU_23390	COG0023	Translation Initiation Factor
CTU_23410	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CTU_23420	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CTU_23430	COG0671	phosphoesterase, PA-phosphatase related
CTU_23480	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CTU_23500	COG0616	signal peptide processing
CTU_23510	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_23520	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
CTU_23540	COG0009	L-threonylcarbamoyladenylate synthase
CTU_23550	COG0613	PHP domain protein
CTU_23570	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CTU_23570	COG0512	Glutamine amidotransferase of anthranilate synthase
CTU_23630	COG3047	cAMP biosynthetic process
CTU_23680	COG1607	acyl-coa hydrolase
CTU_23700	COG2350	Protein conserved in bacteria
CTU_23760	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CTU_23780	COG0444	Belongs to the ABC transporter superfamily
CTU_23790	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CTU_23800	COG0601	transmembrane transport
CTU_23830	COG2095	MarC family integral membrane protein
CTU_23840	COG1012	belongs to the aldehyde dehydrogenase family
CTU_23840	COG1454	alcohol dehydrogenase
CTU_23890	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CTU_23900	COG0745	RESPONSE REGULATOR receiver
CTU_23920	COG0788	formyltetrahydrofolate deformylase activity
CTU_23930	COG0477	Major facilitator Superfamily
CTU_23950	COG0300	oxidoreductase activity
CTU_23980	COG2181	nitrate reductase activity
CTU_23990	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CTU_24000	COG1140	nitrate reductase beta subunit
CTU_24010	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CTU_24020	COG2223	nitrite transmembrane transporter activity
CTU_24040	COG3850	Histidine kinase
CTU_24050	COG2197	response regulator
CTU_24060	COG4932	domain protein
CTU_24070	COG0243	molybdopterin cofactor binding
CTU_24080	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CTU_24080	COG2146	nitrite reductase [NAD(P)H] activity
CTU_24090	COG1116	anion transmembrane transporter activity
CTU_24100	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTU_24110	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CTU_24120	COG3707	response regulator
CTU_24130	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CTU_24140	COG0840	transmembrane signaling receptor activity
CTU_24160	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CTU_24170	COG4572	Cation transport regulator
CTU_24180	COG0387	Pfam Sodium calcium exchanger
CTU_24200	COG2912	Transglutaminase-like superfamily
CTU_24210	COG3094	Invasion gene expression up-regulator, SirB
CTU_24220	COG2890	protein-(glutamine-N5) methyltransferase activity
CTU_24270	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CTU_24280	COG0659	secondary active sulfate transmembrane transporter activity
CTU_24320	COG0012	GTP binding
CTU_24330	COG3318	Belongs to the UPF0149 family
CTU_24330	COG3012	SEC-C Motif Domain Protein
CTU_24360	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTU_24380	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CTU_24430	COG3842	ATPase activity
CTU_24450	COG1609	Transcriptional regulator
CTU_24470	COG4774	siderophore transport
CTU_24520	COG1619	proteins homologs of microcin C7 resistance protein MccF
CTU_24540	COG0456	acetyltransferase
CTU_24550	COG0840	transmembrane signaling receptor activity
CTU_24570	COG0667	Aldo Keto reductase
CTU_24580	COG0583	DNA-binding transcription factor activity
CTU_24600	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CTU_24620	COG2719	SpoVR family
CTU_24680	COG0463	Glycosyl transferase, family 2
CTU_24700	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CTU_24710	COG2801	Transposase and inactivated derivatives
CTU_24720	COG2801	Transposase and inactivated derivatives
CTU_24730	COG2963	transposase activity
CTU_24750	COG0179	Fumarylacetoacetate (FAA) hydrolase
CTU_24780	COG2894	cell division
CTU_24810	COG0318	PFAM AMP-dependent synthetase and ligase
CTU_24820	COG3065	identical protein binding
CTU_24830	COG1214	PFAM Peptidase M22, glycoprotease
CTU_24840	COG1199	ATP-dependent helicase activity
CTU_24850	COG0251	oxidation-reduction process
CTU_24860	COG3239	Fatty acid desaturase
CTU_24920	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CTU_24930	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CTU_24970	COG1760	l-serine dehydratase
CTU_24980	COG2200	EAL domain
CTU_24990	COG1253	flavin adenine dinucleotide binding
CTU_25000	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_25000	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_25010	COG3715	PTS system
CTU_25020	COG3716	PTS system mannose fructose sorbose family IID component
CTU_25050	COG2226	methyltransferase
CTU_25060	COG1278	Cold shock
CTU_25110	COG1414	Transcriptional regulator
CTU_25150	COG1956	GAF domain-containing protein
CTU_25160	COG2995	paraquat-inducible protein a
CTU_25170	COG3008	intermembrane lipid transfer
CTU_25210	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CTU_25230	COG1276	copper resistance
CTU_25240	COG2372	response to copper ion
CTU_25260	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CTU_25270	COG1770	oligopeptidase
CTU_25280	COG2979	Protein of unknown function (DUF533)
CTU_25300	COG3141	response to X-ray
CTU_25320	COG0800	Aldolase
CTU_25330	COG0129	dihydroxy-acid dehydratase activity
CTU_25340	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CTU_25360	COG1737	Transcriptional regulator
CTU_25370	COG0469	pyruvate kinase activity
CTU_25380	COG1560	Kdo2-lipid A biosynthetic process
CTU_25390	COG0739	heme binding
CTU_25400	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CTU_25420	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CTU_25470	COG0494	nUDIX hydrolase
CTU_25500	COG1335	isochorismatase
CTU_25510	COG1801	Protein of unknown function DUF72
CTU_25520	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CTU_25550	COG1652	LysM domain
CTU_25570	COG2214	Heat shock protein DnaJ domain protein
CTU_25580	COG0443	Heat shock 70 kDa protein
CTU_25590	COG3142	Participates in the control of copper homeostasis
CTU_25600	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CTU_25630	COG3102	Protein conserved in bacteria
CTU_25680	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CTU_25740	COG0745	RESPONSE REGULATOR receiver
CTU_25840	COG0835	chemotaxis
CTU_25900	COG0589	response to stress
CTU_25930	COG1172	Belongs to the binding-protein-dependent transport system permease family
CTU_25950	COG1879	ABC-type sugar transport system periplasmic component
CTU_25960	COG4297	protein containing double-stranded beta helix domain
CTU_25980	COG1528	Iron-storage protein
CTU_25990	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CTU_26030	COG0477	Major facilitator Superfamily
CTU_26070	COG1528	Iron-storage protein
CTU_26090	COG0814	amino acid
CTU_26100	COG0454	-acetyltransferase
CTU_26120	COG1278	Cold shock
CTU_26160	COG2197	response regulator
CTU_26190	COG2197	response regulator
CTU_26250	COG1191	sigma factor activity
CTU_26280	COG0318	PFAM AMP-dependent synthetase and ligase
CTU_26290	COG3958	Transketolase
CTU_26300	COG3959	Transketolase, thiamine diphosphate binding domain
CTU_26310	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_26320	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_26400	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CTU_26450	COG0425	Belongs to the sulfur carrier protein TusA family
CTU_26460	COG2135	peptidase activity
CTU_26510	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CTU_26560	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CTU_26570	COG1317	bacterial-type flagellum organization
CTU_26580	COG1157	protein secretion by the type III secretion system
CTU_26590	COG2882	bacterial-type flagellum organization
CTU_26610	COG1580	Controls the rotational direction of flagella during chemotaxis
CTU_26640	COG3190	flagellar
CTU_26650	COG1338	Plays a role in the flagellum-specific transport system
CTU_26660	COG1987	bacterial-type flagellum assembly
CTU_26680	COG2197	response regulator
CTU_26730	COG5475	Uncharacterized small protein (DUF2158)
CTU_26740	COG2354	Protein conserved in bacteria
CTU_26750	COG0697	spore germination
CTU_26760	COG3727	T/G mismatch-specific endonuclease activity
CTU_26770	COG0270	DNA (cytosine-5-)-methyltransferase activity
CTU_26780	COG1418	mRNA catabolic process
CTU_26800	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CTU_26820	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_26840	COG0583	DNA-binding transcription factor activity
CTU_26850	COG2203	Gaf domain
CTU_26850	COG4251	negative regulation of phosphorylation
CTU_26850	COG3706	GGDEF domain
CTU_26850	COG5001	Diguanylate cyclase
CTU_26880	COG0477	Major facilitator Superfamily
CTU_26910	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CTU_26930	COG2200	EAL domain
CTU_26940	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CTU_27000	COG0534	Mate efflux family protein
CTU_27060	COG1289	transmembrane transporter activity
CTU_27100	COG2925	Exonuclease
CTU_27110	COG0531	amino acid
CTU_27120	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CTU_27130	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CTU_27140	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CTU_27160	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CTU_27230	COG0140	phosphoribosyl-ATP diphosphatase activity
CTU_27230	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CTU_27250	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CTU_27290	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CTU_27360	COG0438	transferase activity, transferring glycosyl groups
CTU_27370	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CTU_27390	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CTU_27410	COG0438	transferase activity, transferring glycosyl groups
CTU_27420	COG2327	Polysaccharide pyruvyl transferase
CTU_27430	COG2244	polysaccharide biosynthetic process
CTU_27440	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CTU_27460	COG0662	Cupin 2, conserved barrel domain protein
CTU_27460	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CTU_27470	COG0297	glycogen (starch) synthase activity
CTU_27480	COG1051	belongs to the nudix hydrolase family
CTU_27490	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CTU_27500	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CTU_27510	COG0110	maltose O-acetyltransferase activity
CTU_27520	COG1216	Glycosyl transferase, family 2
CTU_27540	COG0438	transferase activity, transferring glycosyl groups
CTU_27550	COG1045	serine acetyltransferase
CTU_27560	COG0463	Glycosyl transferase, family 2
CTU_27570	COG3206	protein involved in exopolysaccharide biosynthesis
CTU_27570	COG0489	protein tyrosine kinase activity
CTU_27600	COG1253	flavin adenine dinucleotide binding
CTU_27610	COG2982	Protein involved in outer membrane biogenesis
CTU_27650	COG3447	MASE1 domain protein
CTU_27650	COG5002	protein histidine kinase activity
CTU_27650	COG5001	Diguanylate cyclase
CTU_27660	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CTU_27670	COG0443	Heat shock 70 kDa protein
CTU_27690	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
CTU_27740	COG2205	protein histidine kinase activity
CTU_27750	COG0745	RESPONSE REGULATOR receiver
CTU_27780	COG1830	Aldolase
CTU_27790	COG0351	phosphomethylpyrimidine kinase
CTU_27840	COG5455	response to cobalt ion
CTU_27850	COG0488	(ABC) transporter
CTU_27880	COG0840	transmembrane signaling receptor activity
CTU_27900	COG3275	phosphorelay sensor kinase activity
CTU_27920	COG0489	protein tyrosine kinase activity
CTU_27950	COG0789	Transcriptional regulator
CTU_27970	COG1174	glycine betaine transport
CTU_27980	COG1125	glycine betaine transport
CTU_27990	COG1174	glycine betaine transport
CTU_28000	COG1732	Glycine betaine
CTU_28010	COG1472	Belongs to the glycosyl hydrolase 3 family
CTU_28020	COG0277	FAD linked oxidase domain protein
CTU_28040	COG1686	Belongs to the peptidase S11 family
CTU_28060	COG0586	Pfam SNARE associated Golgi protein
CTU_28070	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_28110	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CTU_28130	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
CTU_28150	COG1346	cytolysis
CTU_28170	COG2949	membrane
CTU_28190	COG1129	ABC transporter
CTU_28200	COG1879	ABC-type sugar transport system periplasmic component
CTU_28220	COG2311	Membrane
CTU_28230	COG0302	gtp cyclohydrolase
CTU_28240	COG0477	Major facilitator Superfamily
CTU_28260	COG0833	amino acid
CTU_28270	COG0583	DNA-binding transcription factor activity
CTU_28280	COG2855	membrane
CTU_28310	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CTU_28310	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CTU_28310	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CTU_28320	COG1105	Belongs to the carbohydrate kinase PfkB family
CTU_28330	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_28330	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_28340	COG2814	Major facilitator Superfamily
CTU_28380	COG0246	Mannitol dehydrogenase
CTU_28390	COG0523	cobalamin synthesis protein
CTU_28400	COG0671	phosphoesterase, PA-phosphatase related
CTU_28410	COG0791	NLP P60 protein
CTU_28420	COG2200	EAL domain
CTU_28430	COG4166	transmembrane transport
CTU_28440	COG4174	ABC transporter (Permease)
CTU_28450	COG4239	(ABC) transporter, permease
CTU_28460	COG4172	Belongs to the ABC transporter superfamily
CTU_28490	COG2814	Major facilitator Superfamily
CTU_28500	COG1187	pseudouridine synthase activity
CTU_28510	COG1061	Type III restriction enzyme res subunit
CTU_28550	COG3083	sulfuric ester hydrolase activity
CTU_28570	COG0745	RESPONSE REGULATOR receiver
CTU_28600	COG1051	belongs to the nudix hydrolase family
CTU_28670	COG0659	secondary active sulfate transmembrane transporter activity
CTU_28680	COG4615	Cyclic peptide transporter
CTU_28690	COG3145	DNA-N1-methyladenine dioxygenase activity
CTU_28700	COG2169	Transcriptional regulator
CTU_28700	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CTU_28710	COG1477	protein flavinylation
CTU_28720	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CTU_28730	COG2198	Histidine kinase
CTU_28730	COG0642	Histidine kinase
CTU_28740	COG2197	response regulator
CTU_28750	COG2205	protein histidine kinase activity
CTU_28750	COG0784	Response regulator, receiver
CTU_28780	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CTU_28800	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTU_28810	COG0584	glycerophosphoryl diester phosphodiesterase
CTU_28820	COG2271	Major facilitator Superfamily
CTU_28860	COG0642	Histidine kinase
CTU_28910	COG3647	Membrane
CTU_28970	COG1169	isochorismate synthase
CTU_28980	COG4575	ribosome binding
CTU_28990	COG2153	protein acetylation
CTU_29020	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CTU_29030	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CTU_29050	COG0839	Belongs to the complex I subunit 6 family
CTU_29080	COG1034	ATP synthesis coupled electron transport
CTU_29090	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CTU_29100	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CTU_29150	COG0583	DNA-binding transcription factor activity
CTU_29160	COG0436	Aminotransferase
CTU_29180	COG0490	domain, Protein
CTU_29180	COG0471	metal ion transport
CTU_29190	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTU_29260	COG1309	transcriptional regulator
CTU_29270	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
CTU_29280	COG0622	Phosphoesterase
CTU_29290	COG0625	glutathione transferase activity
CTU_29300	COG0625	glutathione transferase activity
CTU_29310	COG1090	epimerase
CTU_29340	COG4598	ABC transporter
CTU_29350	COG4160	amino acid transport
CTU_29360	COG4215	(ABC) transporter
CTU_29370	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTU_29390	COG0163	prenyltransferase activity
CTU_29400	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CTU_29410	COG1286	toxin biosynthetic process
CTU_29420	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CTU_29430	COG0285	dihydrofolate synthase activity
CTU_29450	COG0586	Pfam SNARE associated Golgi protein
CTU_29470	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CTU_29510	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CTU_29530	COG0840	transmembrane signaling receptor activity
CTU_29550	COG3101	peptidyl-lysine hydroxylation
CTU_29560	COG0730	response to heat
CTU_29590	COG2890	protein-(glutamine-N5) methyltransferase activity
CTU_29600	COG2840	Smr protein MutS2
CTU_29610	COG2062	phosphohistidine phosphatase, SixA
CTU_29640	COG3691	Protein conserved in bacteria
CTU_29670	COG3088	subunit of a heme lyase
CTU_29670	COG4235	cytochrome complex assembly
CTU_29680	COG3088	subunit of a heme lyase
CTU_29680	COG4235	cytochrome complex assembly
CTU_29700	COG1138	Cytochrome C-type biogenesis protein
CTU_29720	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CTU_29730	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CTU_29740	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CTU_29750	COG4133	protoheme IX ABC transporter activity
CTU_29760	COG2116	formate transmembrane transporter activity
CTU_29800	COG1683	Conserved Protein
CTU_29840	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CTU_29900	COG0598	Magnesium transport protein CorA
CTU_29920	COG0436	Aminotransferase
CTU_29940	COG3275	phosphorelay sensor kinase activity
CTU_29950	COG3279	Response regulator of the LytR AlgR family
CTU_29970	COG3961	Belongs to the TPP enzyme family
CTU_29980	COG0667	Aldo Keto reductase
CTU_30010	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CTU_30020	COG2200	EAL domain
CTU_30020	COG2199	diguanylate cyclase activity
CTU_30030	COG3415	Transposase
CTU_30070	COG3530	Putative quorum-sensing-regulated virulence factor
CTU_30110	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CTU_30130	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTU_30150	COG2190	(PTS) system
CTU_30180	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CTU_30190	COG4208	sulfate ABC transporter
CTU_30200	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CTU_30210	COG4150	thiosulfate binding
CTU_30220	COG2837	iron assimilation
CTU_30250	COG3111	PFAM Bacterial OB fold (BOF) protein
CTU_30280	COG0860	N-Acetylmuramoyl-L-alanine amidase
CTU_30350	COG1172	Belongs to the binding-protein-dependent transport system permease family
CTU_30360	COG1129	ABC transporter
CTU_30370	COG0371	Dehydrogenase
CTU_30410	COG2879	small protein
CTU_30420	COG1966	Carbon starvation protein
CTU_30440	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_30450	COG1535	isochorismatase
CTU_30450	COG3433	isochorismatase activity
CTU_30460	COG1021	2,3-dihydroxybenzoate-AMP ligase
CTU_30470	COG1169	isochorismate synthase
CTU_30480	COG4592	Periplasmic binding protein
CTU_30500	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CTU_30510	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CTU_30520	COG1120	ATPase activity
CTU_30550	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CTU_30600	COG5342	invasion associated locus B
CTU_30620	COG2197	response regulator
CTU_30630	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CTU_30650	COG1393	Belongs to the ArsC family
CTU_30680	COG0400	carboxylic ester hydrolase activity
CTU_30700	COG2321	neutral zinc metallopeptidase
CTU_30720	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CTU_30740	COG2716	regulation of RNA biosynthetic process
CTU_30750	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CTU_30760	COG0628	permease
CTU_30770	COG4783	chaperone-mediated protein folding
CTU_30780	COG1393	Belongs to the ArsC family
CTU_30800	COG2233	PERMEase
CTU_30830	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CTU_30850	COG0248	Ppx GppA phosphatase
CTU_30860	COG2200	EAL domain
CTU_30920	COG2207	Transcriptional regulator
CTU_30920	COG1917	Cupin 2, conserved barrel domain protein
CTU_30940	COG2223	nitrite transmembrane transporter activity
CTU_30950	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CTU_31000	COG0517	IMP dehydrogenase activity
CTU_31000	COG0516	GMP reductase activity
CTU_31040	COG1645	bacterial-type flagellum-dependent swarming motility
CTU_31070	COG2976	Protein conserved in bacteria
CTU_31130	COG4953	penicillin-binding protein 1C
CTU_31140	COG2373	Large extracellular alpha-helical protein
CTU_31160	COG1263	PTS System
CTU_31160	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_31160	COG2190	(PTS) system
CTU_31180	COG2897	thiosulfate sulfurtransferase activity
CTU_31240	COG2975	iron-sulfur cluster assembly
CTU_31250	COG0633	Ferredoxin
CTU_31290	COG0822	iron-sulfur transferase activity
CTU_31340	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CTU_31350	COG3683	transport system, periplasmic component
CTU_31360	COG3711	transcriptional antiterminator
CTU_31370	COG2814	Major facilitator Superfamily
CTU_31430	COG0347	Belongs to the P(II) protein family
CTU_31440	COG2204	response regulator
CTU_31450	COG3170	Tfp pilus assembly protein FimV
CTU_31460	COG2205	protein histidine kinase activity
CTU_31470	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CTU_31470	COG0047	phosphoribosylformylglycinamidine synthase activity
CTU_31480	COG0590	tRNA wobble adenosine to inosine editing
CTU_31490	COG0560	Phosphoserine phosphatase
CTU_31500	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_31500	COG1263	PTS System
CTU_31520	COG1737	Transcriptional regulator
CTU_31530	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CTU_31590	COG0681	Belongs to the peptidase S26 family
CTU_31610	COG3086	response to oxidative stress
CTU_31650	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CTU_31670	COG0513	Belongs to the DEAD box helicase family
CTU_31700	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CTU_31710	COG3118	belongs to the thioredoxin family
CTU_31740	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CTU_31750	COG5544	Lipoprotein
CTU_31760	COG0477	Major facilitator Superfamily
CTU_31780	COG0028	Belongs to the TPP enzyme family
CTU_31810	COG0542	response to heat
CTU_31830	COG0564	pseudouridine synthase activity
CTU_31840	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CTU_31860	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CTU_31870	COG1605	Chorismate mutase
CTU_31870	COG0077	Prephenate dehydratase
CTU_31890	COG0287	Prephenate dehydrogenase
CTU_31890	COG1605	Chorismate mutase
CTU_31900	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CTU_31970	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CTU_31980	COG4137	Cytochrome C assembly protein
CTU_31990	COG4536	flavin adenine dinucleotide binding
CTU_32020	COG0497	DNA recombination
CTU_32050	COG2867	negative regulation of translational initiation
CTU_32070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTU_32080	COG1132	(ABC) transporter
CTU_32230	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CTU_32410	COG4695	Portal protein
CTU_32480	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CTU_32540	COG4974	Belongs to the 'phage' integrase family
CTU_32560	COG0582	viral genome integration into host DNA
CTU_32570	COG0582	viral genome integration into host DNA
CTU_32670	COG0840	transmembrane signaling receptor activity
CTU_32680	COG0401	homolog of Blt101
CTU_32740	COG4575	ribosome binding
CTU_32780	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CTU_32800	COG4175	Glycine betaine
CTU_32820	COG2814	Major facilitator Superfamily
CTU_32830	COG1846	Transcriptional regulator
CTU_32840	COG1566	PFAM secretion protein HlyD family protein
CTU_32850	COG2814	Major facilitator Superfamily
CTU_32890	COG1238	metal cluster binding
CTU_32900	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTU_32950	COG1546	Belongs to the CinA family
CTU_32960	COG2951	lytic endotransglycosylase activity
CTU_32970	COG1126	abc transporter atp-binding protein
CTU_32980	COG0765	amino acid transport
CTU_33070	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CTU_33080	COG0163	prenyltransferase activity
CTU_33270	COG2234	aminopeptidase activity
CTU_33310	COG0720	synthase
CTU_33320	COG0602	queuosine metabolic process
CTU_33330	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CTU_33340	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
CTU_33350	COG1263	PTS System
CTU_33350	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_33350	COG2190	(PTS) system
CTU_33360	COG1737	Transcriptional regulator
CTU_33420	COG3956	TIGRFAM MazG family protein
CTU_33430	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CTU_33450	COG3437	response regulator, receiver
CTU_33450	COG3850	Histidine kinase
CTU_33450	COG4999	Histidine kinase
CTU_33450	COG2205	protein histidine kinase activity
CTU_33460	COG0716	FMN binding
CTU_33470	COG0564	pseudouridine synthase activity
CTU_33480	COG3098	single-species biofilm formation
CTU_33520	COG1611	Belongs to the LOG family
CTU_33540	COG0814	amino acid
CTU_33550	COG1760	l-serine dehydratase
CTU_33580	COG2363	Small membrane protein
CTU_33590	COG0583	DNA-binding transcription factor activity
CTU_33610	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CTU_33620	COG2166	iron-sulfur cluster assembly
CTU_33630	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CTU_33640	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CTU_33650	COG0860	N-Acetylmuramoyl-L-alanine amidase
CTU_33670	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CTU_33670	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CTU_33680	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CTU_33690	COG1074	ATP-dependent DNA helicase activity
CTU_33700	COG1025	Belongs to the peptidase M16 family
CTU_33710	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CTU_33720	COG4967	type IV pilus modification protein PilV
CTU_33740	COG4795	General secretion pathway protein
CTU_33750	COG2165	general secretion pathway protein
CTU_33820	COG0861	Integral membrane protein TerC family
CTU_33840	COG0667	Aldo Keto reductase
CTU_33870	COG1609	Transcriptional regulator
CTU_33890	COG2186	Transcriptional regulator
CTU_33900	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CTU_33910	COG2723	6-phospho-beta-galactosidase activity
CTU_33920	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CTU_33930	COG1609	Transcriptional regulator
CTU_33940	COG0019	diaminopimelate decarboxylase activity
CTU_33950	COG0583	DNA-binding transcription factor activity
CTU_33960	COG1794	racemase activity, acting on amino acids and derivatives
CTU_33980	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CTU_33990	COG1175	transmembrane transport
CTU_34000	COG0395	ABC-type sugar transport system, permease component
CTU_34010	COG3842	ATPase activity
CTU_34030	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_34040	COG0823	Involved in the tonB-independent uptake of proteins
CTU_34050	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CTU_34080	COG0183	Belongs to the thiolase family
CTU_34260	COG3772	lysozyme
CTU_34360	COG4942	peptidase
CTU_34400	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CTU_34420	COG4974	Belongs to the 'phage' integrase family
CTU_34430	COG0716	FMN binding
CTU_34450	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CTU_34470	COG1272	protein, Hemolysin III
CTU_34490	COG1737	Transcriptional regulator
CTU_34500	COG2723	6-phospho-beta-galactosidase activity
CTU_34510	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_34560	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTU_34570	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTU_34580	COG0006	proline dipeptidase activity
CTU_34590	COG3079	Belongs to the UPF0149 family
CTU_34610	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CTU_34620	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CTU_34650	COG2968	Membrane
CTU_34660	COG1279	arginine transmembrane transporter activity
CTU_34670	COG0668	transmembrane transport
CTU_34680	COG0191	fructose-bisphosphate aldolase activity
CTU_34720	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CTU_34730	COG0501	Belongs to the peptidase M48B family
CTU_34750	COG1166	arginine decarboxylase activity
CTU_34780	COG2814	Major facilitator Superfamily
CTU_34800	COG2356	endonuclease I
CTU_34810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CTU_34870	COG2805	Type II/IV secretion system protein
CTU_34880	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CTU_34890	COG0762	integral membrane protein
CTU_34920	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CTU_34930	COG2132	Multicopper oxidase
CTU_34940	COG0204	Acyl-transferase
CTU_34950	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CTU_34960	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTU_34970	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CTU_35000	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CTU_35080	COG0187	DNA topoisomerase II activity
CTU_35090	COG3150	esterase
CTU_35100	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CTU_35110	COG3151	Protein conserved in bacteria
CTU_35120	COG0494	nUDIX hydrolase
CTU_35130	COG1538	Outer membrane efflux protein
CTU_35150	COG0754	glutathionylspermidine amidase activity
CTU_35160	COG3384	dioxygenase
CTU_35190	COG2960	long-chain fatty acid transporting porin activity
CTU_35220	COG3025	triphosphatase activity
CTU_35240	COG4991	sh3 domain protein
CTU_35270	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CTU_35310	COG0358	DNA primase activity
CTU_35330	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CTU_35380	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CTU_35480	COG0583	DNA-binding transcription factor activity
CTU_35490	COG1966	Carbon starvation protein
CTU_35500	COG2879	small protein
CTU_35510	COG0523	cobalamin synthesis protein
CTU_35560	COG3171	Protein conserved in bacteria
CTU_35580	COG1194	a g-specific adenine glycosylase
CTU_35610	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
CTU_35670	COG0179	Fumarylacetoacetate (FAA) hydrolase
CTU_35680	COG3493	citrate carrier protein
CTU_35710	COG1982	Orn Lys Arg decarboxylase major
CTU_35730	COG1811	Na channel or pump
CTU_35810	COG4625	pathogenesis
CTU_35820	COG3647	Membrane
CTU_35830	COG1609	Transcriptional regulator
CTU_35860	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CTU_35870	COG1447	Phosphotransferase system cellobiose-specific component IIA
CTU_35880	COG4580	involved in the transport of maltose and maltodextrins
CTU_35900	COG0668	transmembrane transport
CTU_35950	COG1349	DNA-binding transcription factor activity
CTU_35960	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_35970	COG0848	biopolymer transport protein
CTU_35980	COG0811	peptide transport
CTU_35990	COG0626	cystathionine gamma-synthase activity
CTU_36000	COG0586	Pfam SNARE associated Golgi protein
CTU_36010	COG2207	Transcriptional regulator
CTU_36020	COG1979	alcohol dehydrogenase
CTU_36060	COG2999	glutathione oxidoreductase activity
CTU_36070	COG1309	transcriptional regulator
CTU_36090	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CTU_36090	COG1263	PTS System
CTU_36100	COG0366	Alpha amylase catalytic
CTU_36110	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTU_36120	COG0583	DNA-binding transcription factor activity
CTU_36140	COG0602	queuosine metabolic process
CTU_36170	COG0583	DNA-binding transcription factor activity
CTU_36190	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CTU_36210	COG3783	Cytochrome b(562)
CTU_36220	COG0312	modulator of DNA gyrase
CTU_36250	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CTU_36280	COG1172	Belongs to the binding-protein-dependent transport system permease family
CTU_36290	COG1172	Belongs to the binding-protein-dependent transport system permease family
CTU_36300	COG1129	ABC transporter
CTU_36310	COG1879	ABC-type sugar transport system periplasmic component
CTU_36330	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CTU_36380	COG3539	Fimbrial protein
CTU_36390	COG3539	Fimbrial protein
CTU_36420	COG3121	Chaperone
CTU_36430	COG3188	usher protein
CTU_36460	COG2105	PFAM AIG2 family protein
CTU_36470	COG2911	Protein conserved in bacteria
CTU_36480	COG0729	surface antigen
CTU_36500	COG1253	flavin adenine dinucleotide binding
CTU_36520	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CTU_36530	COG1218	3'(2'),5'-bisphosphate nucleotidase
CTU_36550	COG1733	regulation of RNA biosynthetic process
CTU_36560	COG0702	epimerase
CTU_36580	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CTU_36580	COG2169	Transcriptional regulator
CTU_36600	COG0697	spore germination
CTU_36610	COG0840	transmembrane signaling receptor activity
CTU_36640	COG1113	amino acid transport
CTU_36650	COG0545	Peptidyl-prolyl cis-trans isomerase
CTU_36660	COG3061	Opacity-associated protein A
CTU_36710	COG1073	alpha beta
CTU_36720	COG3650	response to hydrogen peroxide
CTU_36750	COG1960	acyl-CoA dehydrogenase activity
CTU_36760	COG0754	glutathionylspermidine amidase activity
CTU_36770	COG5463	Belongs to the UPF0441 family
CTU_36780	COG3766	membrane
CTU_36790	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CTU_36830	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CTU_36840	COG0330	HflC and HflK could
CTU_36850	COG0330	HflC and HflK could
CTU_36870	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CTU_36910	COG0860	N-Acetylmuramoyl-L-alanine amidase
CTU_36920	COG0802	atpase or kinase
CTU_36930	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CTU_36930	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CTU_36940	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CTU_36990	COG3264	Mechanosensitive ion channel
CTU_36990	COG1511	domain protein
CTU_37010	COG1053	succinate dehydrogenase
CTU_37020	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CTU_37050	COG3040	lipid binding
CTU_37090	COG5510	response to toxic substance
CTU_37120	COG1509	lysine 2,3-aminomutase activity
CTU_37160	COG3030	protein affecting phage T7 exclusion by the F plasmid
CTU_37180	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CTU_37210	COG1309	transcriptional regulator
CTU_37220	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CTU_37230	COG0625	glutathione transferase activity
CTU_37270	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CTU_37290	COG2824	Alkylphosphonate utilization operon protein PhnA
CTU_37310	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
CTU_37340	COG0326	Molecular chaperone. Has ATPase activity
CTU_37370	COG1301	dicarboxylic acid transport
CTU_37390	COG3162	membrane
CTU_37400	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CTU_37410	COG0673	inositol 2-dehydrogenase activity
CTU_37420	COG0025	NhaP-type Na H and K H
CTU_37430	COG2252	PERMEase
CTU_37450	COG0789	Transcriptional regulator
CTU_37470	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CTU_37500	COG3706	GGDEF domain
CTU_37500	COG0745	RESPONSE REGULATOR receiver
CTU_37520	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CTU_37530	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CTU_37560	COG3210	domain, Protein
CTU_37580	COG2315	Protein conserved in bacteria
CTU_37590	COG0432	Pfam Uncharacterised protein family UPF0047
CTU_37600	COG2831	hemolysin activation secretion protein
CTU_37610	COG1448	Aminotransferase
CTU_37620	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CTU_37630	COG0305	Participates in initiation and elongation during chromosome replication
CTU_37690	COG0735	belongs to the Fur family
CTU_37700	COG3237	CsbD-like
CTU_37710	COG0534	Mate efflux family protein
CTU_37730	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CTU_37790	COG2182	Extracellular solute-binding protein
CTU_37800	COG1175	transmembrane transport
CTU_37830	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CTU_37840	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CTU_37900	COG0527	aspartate kinase activity
CTU_37910	COG3541	Predicted nucleotidyltransferase
CTU_37920	COG1690	Belongs to the RtcB family
CTU_37940	COG4650	regulator
CTU_37990	COG1283	sodium-dependent phosphate transmembrane transporter activity
CTU_38000	COG0646	methionine synthase
CTU_38000	COG1410	methionine synthase
CTU_38030	COG2224	Isocitrate lyase
CTU_38040	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CTU_38070	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CTU_38110	COG0551	DNA topoisomerase type I activity
CTU_38130	COG0758	DNA mediated transformation
CTU_38170	COG0569	domain protein
CTU_38200	COG0789	Transcriptional regulator
CTU_38260	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CTU_38270	COG0201	protein transport
CTU_38400	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CTU_38480	COG0051	transcription antitermination factor activity, RNA binding
CTU_38600	COG2964	Protein conserved in bacteria
CTU_38610	COG0545	Peptidyl-prolyl cis-trans isomerase
CTU_38630	COG1047	Peptidyl-prolyl cis-trans
CTU_38640	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CTU_38670	COG0488	(ABC) transporter
CTU_38690	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CTU_38710	COG0429	hydrolase of the alpha beta-hydrolase fold
CTU_38730	COG3954	Phosphoribulokinase
CTU_38740	COG1765	OsmC-like protein
CTU_38760	COG1289	transmembrane transporter activity
CTU_38770	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CTU_38830	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CTU_38840	COG2146	nitrite reductase [NAD(P)H] activity
CTU_38870	COG0531	amino acid
CTU_38880	COG2222	sugar isomerase
CTU_38890	COG1082	Xylose isomerase domain protein TIM barrel
CTU_38910	COG2188	Transcriptional regulator
CTU_38930	COG0180	Tryptophanyl-tRNA synthetase
CTU_38950	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CTU_38960	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CTU_38970	COG3266	domain, Protein
CTU_39000	COG4796	Type ii and iii secretion system protein
CTU_39040	COG4972	Pilus assembly protein
CTU_39050	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CTU_39060	COG0494	nUDIX hydrolase
CTU_39080	COG1011	Hydrolase
CTU_39090	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CTU_39110	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CTU_39130	COG2205	protein histidine kinase activity
CTU_39140	COG0745	RESPONSE REGULATOR receiver
CTU_39150	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CTU_39160	COG2183	response to ionizing radiation
CTU_39180	COG1918	ferrous iron import across plasma membrane
CTU_39230	COG1040	competence protein
CTU_39250	COG1278	Cold shock
CTU_39260	COG1640	4-alpha-glucanotransferase
CTU_39270	COG0058	SHG alpha-glucan phosphorylase activity
CTU_39310	COG1349	DNA-binding transcription factor activity
CTU_39330	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CTU_39340	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CTU_39350	COG5001	Diguanylate cyclase
CTU_39350	COG2203	Gaf domain
CTU_39350	COG3706	GGDEF domain
CTU_39350	COG4251	negative regulation of phosphorylation
CTU_39370	COG0058	SHG alpha-glucan phosphorylase activity
CTU_39420	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CTU_39430	COG2095	MarC family integral membrane protein
CTU_39460	COG2610	gluconate transmembrane transporter activity
CTU_39470	COG3265	gluconokinase activity
CTU_39480	COG1609	Transcriptional regulator
CTU_39490	COG1741	Belongs to the pirin family
CTU_39500	COG0673	inositol 2-dehydrogenase activity
CTU_39510	COG1247	-acetyltransferase
CTU_39520	COG0405	Gamma-glutamyltransferase
CTU_39540	COG0584	glycerophosphoryl diester phosphodiesterase
CTU_39580	COG1653	transport
CTU_39590	COG0410	ABC transporter
CTU_39600	COG0411	ABC transporter
CTU_39610	COG4177	L-phenylalanine transmembrane transporter activity
CTU_39620	COG0559	Belongs to the binding-protein-dependent transport system permease family
CTU_39630	COG0683	leucine binding
CTU_39660	COG0683	leucine binding
CTU_39680	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CTU_39700	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CTU_39710	COG2177	Part of the ABC transporter FtsEX involved in
CTU_39720	COG2884	Cell division ATP-binding protein ftsE
CTU_39730	COG0552	protein localization to endoplasmic reticulum
CTU_39740	COG0742	ribosomal rna small subunit methyltransferase
CTU_39750	COG3776	membrane
CTU_39770	COG3714	YhhN family
CTU_39810	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CTU_39830	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CTU_39850	COG0477	Major facilitator Superfamily
CTU_39860	COG0628	permease
CTU_39920	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CTU_40010	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CTU_40030	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_40040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CTU_40050	COG2091	lysine biosynthetic process via aminoadipic acid
CTU_40060	COG0791	NLP P60 protein
CTU_40070	COG0174	glutamine synthetase
CTU_40080	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CTU_40090	COG2081	HI0933 family
CTU_40100	COG0306	phosphate transporter
CTU_40150	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CTU_40160	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CTU_40200	COG3111	PFAM Bacterial OB fold (BOF) protein
CTU_40210	COG1028	Short-chain dehydrogenase reductase Sdr
CTU_40220	COG0583	DNA-binding transcription factor activity
CTU_40230	COG1295	ribonuclease BN
CTU_40240	COG0477	Major facilitator Superfamily
CTU_40250	COG2982	Protein involved in outer membrane biogenesis
CTU_40260	COG2200	EAL domain
CTU_40270	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTU_40280	COG0612	Peptidase, M16
CTU_40300	COG2199	diguanylate cyclase activity
CTU_40300	COG2200	EAL domain
CTU_40310	COG3118	belongs to the thioredoxin family
CTU_40310	COG0457	Tetratricopeptide repeat
CTU_40340	COG1215	transferase activity, transferring glycosyl groups
CTU_40400	COG2194	sulfuric ester hydrolase activity
CTU_40420	COG4608	Belongs to the ABC transporter superfamily
CTU_40430	COG0444	Belongs to the ABC transporter superfamily
CTU_40440	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CTU_40450	COG0601	transmembrane transport
CTU_40460	COG0747	negative chemotaxis
CTU_40490	COG1764	response to oxidative stress
CTU_40500	COG2223	nitrite transmembrane transporter activity
CTU_40510	COG5571	outer membrane autotransporter
CTU_40520	COG2818	Glycosylase
CTU_40540	COG0243	molybdopterin cofactor binding
CTU_40550	COG2885	chlorophyll binding
CTU_40560	COG3443	Belongs to the bacterial solute-binding protein 9 family
CTU_40570	COG1609	Transcriptional regulator
CTU_40590	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTU_40650	COG2944	sequence-specific DNA binding
CTU_40690	COG3274	enterobacterial common antigen metabolic process
CTU_40710	COG1335	isochorismatase
CTU_40720	COG1070	Carbohydrate kinase
CTU_40750	COG4213	ABC transporter substrate-binding protein
CTU_40760	COG1129	ABC transporter
CTU_40770	COG4214	carbohydrate transport
CTU_40780	COG1609	Transcriptional regulator
CTU_40780	COG2207	Transcriptional regulator
CTU_40790	COG2992	FlgJ-related protein
CTU_40800	COG0366	Alpha amylase catalytic
CTU_40810	COG3977	Valine--pyruvate aminotransferase
CTU_40820	COG1501	Belongs to the glycosyl hydrolase 31 family
CTU_40830	COG2211	Major facilitator Superfamily
CTU_40880	COG0667	Aldo Keto reductase
CTU_40890	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CTU_40900	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CTU_40910	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CTU_40920	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CTU_40930	COG2080	2 iron, 2 sulfur cluster binding
CTU_40980	COG1064	alcohol dehydrogenase
CTU_41020	COG2205	protein histidine kinase activity
CTU_41030	COG0745	RESPONSE REGULATOR receiver
CTU_41050	COG2351	hydroxyisourate hydrolase activity
CTU_41090	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CTU_41120	COG3678	ATP-independent chaperone mediated protein folding
CTU_41130	COG0745	RESPONSE REGULATOR receiver
CTU_41140	COG2205	protein histidine kinase activity
CTU_41150	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CTU_41190	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CTU_41200	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CTU_41220	COG4942	peptidase
CTU_41230	COG2861	carbohydrate metabolic process
CTU_41250	COG0463	Glycosyl transferase, family 2
CTU_41260	COG3307	-O-antigen
CTU_41270	COG2194	sulfuric ester hydrolase activity
CTU_41290	COG0156	8-amino-7-oxononanoate synthase activity
CTU_41310	COG0859	PFAM glycosyl transferase family 9
CTU_41320	COG0859	PFAM glycosyl transferase family 9
CTU_41330	COG0859	PFAM glycosyl transferase family 9
CTU_41340	COG0438	transferase activity, transferring glycosyl groups
CTU_41350	COG0438	transferase activity, transferring glycosyl groups
CTU_41360	COG1216	Glycosyl transferase, family 2
CTU_41370	COG1519	Transferase
CTU_41420	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CTU_41440	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CTU_41490	COG1561	YicC-like family, N-terminal region
CTU_41500	COG2860	membrane
CTU_41550	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CTU_41560	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CTU_41570	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CTU_41590	COG3121	Chaperone
CTU_41600	COG3188	usher protein
CTU_41660	COG2233	PERMEase
CTU_41670	COG2982	Protein involved in outer membrane biogenesis
CTU_41680	COG0456	acetyltransferase
CTU_41710	COG1011	Hydrolase
CTU_41720	COG1349	DNA-binding transcription factor activity
CTU_41730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTU_41740	COG2084	Dehydrogenase
CTU_41770	COG2017	converts alpha-aldose to the beta-anomer
CTU_41780	COG1501	Belongs to the glycosyl hydrolase 31 family
CTU_41820	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CTU_41840	COG0174	glutamine synthetase
CTU_41850	COG3852	Histidine kinase
CTU_41880	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CTU_41930	COG0204	Acyl-transferase
CTU_41950	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CTU_41960	COG3084	Protein conserved in bacteria
CTU_41970	COG0746	molybdenum cofactor guanylyltransferase activity
CTU_41980	COG1763	Mo-molybdopterin cofactor biosynthetic process
CTU_41990	COG2186	Transcriptional regulator
CTU_42000	COG0477	Major facilitator Superfamily
CTU_42010	COG1609	Transcriptional regulator
CTU_42020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTU_42030	COG1879	ABC-type sugar transport system periplasmic component
CTU_42040	COG1172	Belongs to the binding-protein-dependent transport system permease family
CTU_42120	COG1522	sequence-specific DNA binding
CTU_42130	COG0716	FMN binding
Ctu_1p00070	COG2814	Major facilitator Superfamily
Ctu_1p00100	COG2378	regulation of single-species biofilm formation
Ctu_1p00130	COG4680	protein conserved in bacteria
Ctu_1p00140	COG5499	transcription regulator containing HTH domain
Ctu_1p00210	COG0583	DNA-binding transcription factor activity
Ctu_1p00290	COG2200	EAL domain
Ctu_1p00300	COG0789	Transcriptional regulator
Ctu_1p00310	COG0688	phosphatidylethanolamine metabolic process
Ctu_1p00320	COG1275	C4-dicarboxylate transporter malic acid transport protein
Ctu_1p00380	COG2329	Antibiotic biosynthesis monooxygenase
Ctu_1p00400	COG0640	Transcriptional regulator
Ctu_1p00420	COG1263	PTS System
Ctu_1p00420	COG2190	(PTS) system
Ctu_1p00420	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Ctu_1p00450	COG3706	GGDEF domain
Ctu_1p00450	COG4251	negative regulation of phosphorylation
Ctu_1p00450	COG5001	Diguanylate cyclase
Ctu_1p00450	COG2203	Gaf domain
Ctu_1p00480	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ctu_1p00490	COG1393	Belongs to the ArsC family
Ctu_1p00500	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
Ctu_1p00510	COG0640	Transcriptional regulator
Ctu_1p00520	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Ctu_1p00530	COG0697	spore germination
Ctu_1p00550	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ctu_1p00560	COG3182	Iron-regulated membrane protein
Ctu_1p00600	COG1120	ATPase activity
Ctu_1p00610	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Ctu_1p00660	COG2723	6-phospho-beta-galactosidase activity
Ctu_1p00690	COG4974	Belongs to the 'phage' integrase family
Ctu_1p00720	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Ctu_1p00790	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Ctu_1p00790	COG2755	lipolytic protein G-D-S-L family
Ctu_1p00800	COG0840	transmembrane signaling receptor activity
Ctu_1p00810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ctu_1p00820	COG0402	S-adenosylhomocysteine deaminase activity
Ctu_1p00850	COG0840	transmembrane signaling receptor activity
Ctu_1p00900	COG0814	amino acid
Ctu_1p00940	COG2850	peptidyl-arginine hydroxylation
Ctu_1p00990	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Ctu_1p01000	COG3550	peptidyl-serine autophosphorylation
Ctu_1p01220	COG3210	domain, Protein
Ctu_1p01330	COG3210	domain, Protein
Ctu_2p00160	COG0250	Participates in transcription elongation, termination and antitermination
Ctu_2p00210	COG3451	type IV secretory pathway VirB4
Ctu_2p00270	COG3504	Conjugal transfer protein
Ctu_2p00280	COG2948	multi-organism process
Ctu_3p00400	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
Ctu_3p00450	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ctu_3p00500	COG2205	protein histidine kinase activity
Ctu_3p00510	COG0745	RESPONSE REGULATOR receiver
Ctu_3p00520	COG1276	copper resistance
Ctu_3p00530	COG2372	response to copper ion
Ctu_3p00540	COG3667	copper resistance
Ctu_3p00550	COG2132	Multicopper oxidase
Ctu_3p00560	COG2132	Multicopper oxidase
Ctu_3p00580	COG0739	heme binding
Ctu_3p00650	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family