LOCUS FJ593629 2759 bp DNA circular VRL 04-MAY-2018 DEFINITION Papaya leaf curl virus segment DNA-A, complete sequence. ACCESSION FJ593629 VERSION FJ593629.1 KEYWORDS . SOURCE Papaya leaf curl virus ORGANISM Papaya leaf curl virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2759) AUTHORS Singh,A.K., Chattopadhyay,B. and Chakraborty,S. TITLE Isolate of Croton yellow vein mosaic virus causing leaf curl disease of radish in India JOURNAL Unpublished REFERENCE 2 (bases 1 to 2759) AUTHORS Singh,A.K., Chattopadhyay,B. and Chakraborty,S. TITLE Direct Submission JOURNAL Submitted (23-DEC-2008) Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, Delhi 110067, India FEATURES Location/Qualifiers source 1..2759 /organism="Papaya leaf curl virus" /mol_type="genomic DNA" /isolate="Pataudi" /host="radish" /db_xref="taxon:53260" /segment="DNA-A" /country="India" /collected_by="S. Chakraborty" gene 147..503 /gene="AV2" CDS 147..503 /gene="AV2" /note="may help in viral movement and suppressor of RNAi" /codon_start=1 /product="precoat protein" /protein_id="ACU00720.1" /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRD LISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTH VPEAQDVQDVQKPRCP" gene complement(298..615) /gene="AC5" CDS complement(298..615) /gene="AC5" /codon_start=1 /product="AC5 protein" /protein_id="ACU00725.1" /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFASLRDIWAS VHPVHPGLPVHGSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLRSGRGNDYICWTLR HNF" gene 307..1077 /gene="AV1" CDS 307..1077 /gene="AV1" /note="required for encapsidation and vector trasmission" /codon_start=1 /product="coat protein" /protein_id="ACU00719.1" /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAW ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLT HRVGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYD NEPSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGK YENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN" gene complement(1080..1484) /gene="AC3" CDS complement(1080..1484) /gene="AC3" /note="replication enhancer protein; enhances geminivirus replication" /codon_start=1 /product="REn" /protein_id="ACU00723.1" /translation="MDSRTGEPITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMKED IITVQIQFNHNLRKVLGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISI NTVIRSVDHVLWNVLQHIVYVEQSSSIKFNLY" gene complement(1225..1629) /gene="AC2" CDS complement(1225..1629) /gene="AC2" /note="trans-activator protein; suppressor of PTGS" /codon_start=1 /product="TrAP" /protein_id="ACU00722.1" /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISI ACHDHGFTHRGTHHCSSSREWRVYLGNSKSPVFQDNRTPQQAIPNEGRHHHRSDTVQS QPEESIGDTQMFPSLPNLDDLTASDWSFLKGL" gene complement(1532..2617) /gene="AC1" CDS complement(1532..2617) /gene="AC1" /note="replicase; essential for viral replication" /codon_start=1 /product="Rep" /protein_id="ACU00721.1" /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFI RVAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKS YIEKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIF QYHNLKCNLDRIFTPPMEVYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIV IEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMG AQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWTLKNATFI TLEGPLYSGSNQSAAQDSQERDQASTS" gene complement(2203..2460) /gene="AC4" CDS complement(2203..2460) /gene="AC4" /note="required for symptom expression and suppressor of RNAi" /codon_start=1 /product="AC4 protein" /protein_id="ACU00724.1" /translation="MGLCISMPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSP ALMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" ORIGIN 1 accggatggc cgcgaaaaaa aaaaaagtgg gccccatggc gcactaactg acaaagactt 61 ctccaccaat gagaagagct cctcaaagct taattgtttt gtggtcccct atttaaactt 121 cgccaccaag tagtgcattg cgcactatgt gggatccatt agtaaacgag tttcccgaaa 181 ccgtacacgg gtttagatgt atgttagcag ttaaatattt gcagttagta gagaagactt 241 atgctcctga cacattgggg cacgatttaa ttagggattt aatttcagta attagggcta 301 gaaattatgt cgaagcgtcc agcagatata atcatttcca cgcccgcttc gaaggtacgc 361 cgtcgtctca acttcgacag cccatatgtg aaccgtgctg ctgcccccat tgtccgcgtc 421 accaaagcaa aggcatgggc gaacagaccc atgtaccgga agcccaggat gtacaggatg 481 tacagaagcc cagatgtccc taagggatgc gaaggcccat gtaaggtgca gtcttttgat 541 gcgaagaatg atattggtca catgggtaag gttatttgtc tttctgatgt tactaggggt 601 attgggctga cccatcgagt agggaaacgt ttctgcgtga agtcattgta ttttgttggc 661 aaaatatgga tggacgagaa catcaagacc aagaaccata cgaatactgt tatgttttgg 721 atcgttagag ataggcgtcc ttcaggaacc ccaaatgatt ttcagcaagt gttcaatgtt 781 tatgataatg agccctctac ggctactgtg aagaacgacc agcgtgatcg ttttcaggtg 841 ttgaggaggt ttcaagcaac cgttacaggt ggtcaatatg ctgctaagga acaagctata 901 attaggaaat tctatcgtgt taacaattat gtggtgtata atcaccagga agctgggaag 961 tatgaaaatc acactgagaa tgctttgttg ttgtatatgg catgtactca tgcctctaac 1021 cctgtgtatg ctactttgaa agttaggagt tacttctacg attctgtaac aaattaatat 1081 taataaagat tgaattttat tgatgaagat tgttctacat atacaatgtg ttgtaataca 1141 ttccataata catgatcaac tgatctaatt acagtattaa tactgataac tcctaaatta 1201 tttaagtact taagaacttg ggtcttaaag acccttaaga aacgaccagt cggaggctgt 1261 gaggtcatcc agattcggaa ggctaggaaa catttgtgta tccccaatac tttcctcagg 1321 ttgtgattga actgtatctg aacggtgatg atgtcttcct tcattaggaa tggcctgttg 1381 tggtgttctg ttatcttgaa atacagggga ttttgaattt cccagataaa cacgccattc 1441 tctgcttgag ctgcagtgat gggttcccct gtgcgtgaat ccatggtcgt ggcaagctat 1501 ggatatgaag tatgaacacc cacacggtag atcaactcgt cgacgcctga tccctttctt 1561 ggctatcttg tgctgcactt tgattggaac ctgagtagag tgggccttcg agggtgatga 1621 aggtcgcatt ctttaaagtc caattcttga gtgcagcatt tttctcttca tccaagaact 1681 ctttataact tgaatttggt cctggattgc agaggaagat agttggaatt ccacctttaa 1741 tttgaactgg ctttccgtac tttgtatttg attgccagtc cctttgggcc cccatgaact 1801 ccttaaagtg ctttaggtag tgggggtcta cgtcatcaat gacgttatac caggcatcat 1861 tattgtagac ctttgggcta aggtctagat gaccacacaa atagttatgt ggtccaagtg 1921 atctggccca catcgtcttg cccgttctac tatcaccctc tatcactata cttatgggcc 1981 tcaaaggccg cgcagcggca ctgacaacgt tctcggcagc ccattcctca agttcttgtg 2041 gaacttggtc aaaagaagaa gaagaaaaag gagaaacata aacctccatc ggaggtgtaa 2101 aaatcctatc taaattacat tttaaattat gatattgaaa aataaaatct ttagggagtt 2161 tttccctaat tattgctaaa gctgcgtcag ctgaacctgc atttagggcc tctgctgctg 2221 catcattagc tgtctgttga cctcctcgag cagatcttcc atcgatctga aactgacccc 2281 agtcgatgta atcactgtcc ttctcgatgt aggacttgac atcagagctg gactttgctc 2341 cctggaagtt tgggtggaat tgggaggagt tattagggtg agtgacatcg aaatgtctgg 2401 ggtttctgaa cttggcttta cctttgaact ggatgagggc atggatatgc agagacccat 2461 cttggtgttt ttcttgtgcc actctgataa ataatttatc agatgggcaa tttattgact 2521 gaagaatctc gagcatttgc tctttgggta ttgggcattt tggataagtg aggaagatat 2581 ttttggcatt aacacaaaaa gagttaatac gaggcatatt gaattgggga cactcaaaac 2641 tctgaggaat gggggactcg ggggacgcat ttatatggtg tccccaaatg gctttttcgt 2701 aattacgaaa gaaaattcaa aattctcacg ctcccaaaag cggccatccg tataatatt //