locus-tag	class	description
CPATCC_000017	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CPATCC_000059	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_000064	COG0561	phosphatase activity
CPATCC_000069	COG0400	carboxylic ester hydrolase activity
CPATCC_000084	COG0563	adenylate kinase activity
CPATCC_000099	COG3588	fructose-bisphosphate aldolase
CPATCC_000127	COG0085	RNA polymerase activity
CPATCC_000141	COG1643	Atp-dependent helicase
CPATCC_000166	COG0009	L-threonylcarbamoyladenylate synthase
CPATCC_000192	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_000197	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CPATCC_000207	COG0469	pyruvate kinase activity
CPATCC_000223	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CPATCC_000248	COG1025	Belongs to the peptidase M16 family
CPATCC_000258	COG0537	adenosine 5'-monophosphoramidase activity
CPATCC_000283	COG5265	(ABC) transporter
CPATCC_000285	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_000302	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_000322	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CPATCC_000323	COG1121	(ABC) transporter
CPATCC_000351	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_000357	COG1132	(ABC) transporter
CPATCC_000400	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_000403	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CPATCC_000406	COG4221	oxidoreductase activity
CPATCC_000417	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CPATCC_000417	COG4624	Iron only hydrogenase large subunit, C-terminal domain
CPATCC_000450	COG0133	tryptophan synthase activity
CPATCC_000465	COG0515	serine threonine protein kinase
CPATCC_000465	COG2815	serine threonine protein kinase
CPATCC_000467	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CPATCC_000469	COG0424	maF-like protein
CPATCC_000472	COG1025	Belongs to the peptidase M16 family
CPATCC_000476	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CPATCC_000493	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CPATCC_000498	COG1160	GTP binding
CPATCC_000523	COG1132	(ABC) transporter
CPATCC_000540	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_000556	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CPATCC_000594	COG0484	heat shock protein binding
CPATCC_000599	COG2815	serine threonine protein kinase
CPATCC_000599	COG0515	serine threonine protein kinase
CPATCC_000618	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_000632	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CPATCC_000632	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CPATCC_000644	COG2131	deaminase
CPATCC_000645	COG4581	dead DEAH box helicase
CPATCC_000646	COG0612	Peptidase, M16
CPATCC_000647	COG1196	nuclear chromosome segregation
CPATCC_000701	COG2815	serine threonine protein kinase
CPATCC_000701	COG0515	serine threonine protein kinase
CPATCC_000702	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CPATCC_000706	COG0484	heat shock protein binding
CPATCC_000716	COG1160	GTP binding
CPATCC_000720	COG0205	6-phosphofructokinase activity
CPATCC_000726	COG2895	sulfate adenylyltransferase (ATP) activity
CPATCC_000746	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CPATCC_000746	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CPATCC_000779	COG2815	serine threonine protein kinase
CPATCC_000779	COG0515	serine threonine protein kinase
CPATCC_000794	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CPATCC_000811	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_000816	COG0515	serine threonine protein kinase
CPATCC_000816	COG2815	serine threonine protein kinase
CPATCC_000833	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CPATCC_000839	COG0515	serine threonine protein kinase
CPATCC_000839	COG2815	serine threonine protein kinase
CPATCC_000845	COG0513	Belongs to the DEAD box helicase family
CPATCC_000854	COG1025	Belongs to the peptidase M16 family
CPATCC_000891	COG0459	protein refolding
CPATCC_000914	COG1132	(ABC) transporter
CPATCC_000916	COG2274	protein secretion by the type I secretion system
CPATCC_000918	COG1132	(ABC) transporter
CPATCC_000920	COG2274	protein secretion by the type I secretion system
CPATCC_000970	COG0515	serine threonine protein kinase
CPATCC_000974	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CPATCC_000979	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CPATCC_000997	COG4581	dead DEAH box helicase
CPATCC_001009	COG0514	ATP-dependent DNA helicase (RecQ)
CPATCC_001040	COG0318	PFAM AMP-dependent synthetase and ligase
CPATCC_001050	COG1132	(ABC) transporter
CPATCC_001055	COG1073	alpha beta
CPATCC_001068	COG0255	Belongs to the universal ribosomal protein uL29 family
CPATCC_001075	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CPATCC_001078	COG2815	serine threonine protein kinase
CPATCC_001078	COG0515	serine threonine protein kinase
CPATCC_001081	COG0484	heat shock protein binding
CPATCC_001089	COG0037	tRNA processing
CPATCC_001108	COG1253	flavin adenine dinucleotide binding
CPATCC_001136	COG2255	four-way junction helicase activity
CPATCC_001143	COG2815	serine threonine protein kinase
CPATCC_001143	COG0515	serine threonine protein kinase
CPATCC_001153	COG0513	Belongs to the DEAD box helicase family
CPATCC_001177	COG0515	serine threonine protein kinase
CPATCC_001201	COG0617	tRNA 3'-terminal CCA addition
CPATCC_001201	COG0517	IMP dehydrogenase activity
CPATCC_001201	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CPATCC_001206	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CPATCC_001207	COG0052	Belongs to the universal ribosomal protein uS2 family
CPATCC_001216	COG0604	alcohol dehydrogenase
CPATCC_001216	COG3321	synthase
CPATCC_001244	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CPATCC_001257	COG0638	Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
CPATCC_001267	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CPATCC_001274	COG0484	heat shock protein binding
CPATCC_001301	COG2815	serine threonine protein kinase
CPATCC_001301	COG0515	serine threonine protein kinase
CPATCC_001318	COG0515	serine threonine protein kinase
CPATCC_001319	COG2815	serine threonine protein kinase
CPATCC_001319	COG0515	serine threonine protein kinase
CPATCC_001327	COG2271	Major facilitator Superfamily
CPATCC_001362	COG0513	Belongs to the DEAD box helicase family
CPATCC_001368	COG0443	Heat shock 70 kDa protein
CPATCC_001380	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CPATCC_001385	COG1362	aminopeptidase activity
CPATCC_001393	COG0513	Belongs to the DEAD box helicase family
CPATCC_001401	COG0326	Molecular chaperone. Has ATPase activity
CPATCC_001406	COG1793	dna ligase
CPATCC_001408	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CPATCC_001409	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CPATCC_001414	COG0481	GTPase activity
CPATCC_001418	COG0513	Belongs to the DEAD box helicase family
CPATCC_001458	COG1025	Belongs to the peptidase M16 family
CPATCC_001460	COG1025	Belongs to the peptidase M16 family
CPATCC_001461	COG1025	Belongs to the peptidase M16 family
CPATCC_001463	COG0417	DNA replication proofreading
CPATCC_001465	COG0515	serine threonine protein kinase
CPATCC_001465	COG2815	serine threonine protein kinase
CPATCC_001488	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_001521	COG2119	membrane
CPATCC_001523	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CPATCC_001550	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CPATCC_001550	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CPATCC_001550	COG1013	pyruvate-flavodoxin oxidoreductase activity
CPATCC_001550	COG0674	pyruvate-flavodoxin oxidoreductase activity
CPATCC_001551	COG3268	Saccharopine dehydrogenase
CPATCC_001555	COG0450	alkyl hydroperoxide reductase
CPATCC_001561	COG0187	DNA topoisomerase II activity
CPATCC_001564	COG4284	Utp--glucose-1-phosphate uridylyltransferase
CPATCC_001589	COG3118	belongs to the thioredoxin family
CPATCC_001600	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CPATCC_001601	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_001621	COG1136	(ABC) transporter
CPATCC_001625	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CPATCC_001637	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CPATCC_001645	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPATCC_001645	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPATCC_001659	COG2890	protein-(glutamine-N5) methyltransferase activity
CPATCC_001707	COG0515	serine threonine protein kinase
CPATCC_001707	COG2815	serine threonine protein kinase
CPATCC_001710	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CPATCC_001715	COG0443	Heat shock 70 kDa protein
CPATCC_001718	COG1867	N(2),N(2)-dimethylguanosine tRNA methyltransferase
CPATCC_001741	COG1104	cysteine desulfurase activity
CPATCC_001760	COG0006	proline dipeptidase activity
CPATCC_001761	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CPATCC_001761	COG1028	Short-chain dehydrogenase reductase Sdr
CPATCC_001761	COG3321	synthase
CPATCC_001761	COG4221	oxidoreductase activity
CPATCC_001773	COG0484	heat shock protein binding
CPATCC_001779	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CPATCC_001785	COG0670	Belongs to the BI1 family
CPATCC_001792	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CPATCC_001793	COG0584	glycerophosphoryl diester phosphodiesterase
CPATCC_001802	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_001832	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CPATCC_001871	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CPATCC_001873	COG0105	UTP biosynthetic process
CPATCC_001884	COG0513	Belongs to the DEAD box helicase family
CPATCC_001884	COG0513	Belongs to the DEAD box helicase family
CPATCC_001894	COG1222	aaa ATPase
CPATCC_001910	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_001912	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CPATCC_001922	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CPATCC_001936	COG1160	GTP binding
CPATCC_001954	COG1643	Atp-dependent helicase
CPATCC_001975	COG1132	(ABC) transporter
CPATCC_001978	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CPATCC_001998	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CPATCC_002006	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_002044	COG0584	glycerophosphoryl diester phosphodiesterase
CPATCC_002058	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CPATCC_002063	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_002073	COG0281	malic enzyme
CPATCC_002080	COG0515	serine threonine protein kinase
CPATCC_002080	COG2815	serine threonine protein kinase
CPATCC_002117	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CPATCC_002120	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CPATCC_002136	COG0724	RNA recognition motif
CPATCC_002149	COG0105	UTP biosynthetic process
CPATCC_002174	COG1720	tRNA m6t6A37 methyltransferase activity
CPATCC_002175	COG0504	CTP synthase activity
CPATCC_002193	COG0459	protein refolding
CPATCC_002200	COG0148	phosphopyruvate hydratase activity
CPATCC_002215	COG4581	dead DEAH box helicase
CPATCC_002246	COG5277	cytoskeleton organization
CPATCC_002257	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CPATCC_002265	COG0515	serine threonine protein kinase
CPATCC_002265	COG2815	serine threonine protein kinase
CPATCC_002272	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CPATCC_002275	COG0463	Glycosyl transferase, family 2
CPATCC_002278	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CPATCC_002287	COG1064	alcohol dehydrogenase
CPATCC_002315	COG0366	Alpha amylase catalytic
CPATCC_002320	COG0484	heat shock protein binding
CPATCC_002347	COG0018	arginyl-trna synthetase
CPATCC_002355	COG0500	methyltransferase
CPATCC_002359	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_002382	COG1643	Atp-dependent helicase
CPATCC_002396	COG2267	carboxylic ester hydrolase activity
CPATCC_002418	COG2264	protein methyltransferase activity
CPATCC_002438	COG0714	Associated with various cellular activities
CPATCC_002441	COG0438	transferase activity, transferring glycosyl groups
CPATCC_002443	COG5277	cytoskeleton organization
CPATCC_002464	COG0563	adenylate kinase activity
CPATCC_002472	COG0484	heat shock protein binding
CPATCC_002481	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CPATCC_002483	COG0484	heat shock protein binding
CPATCC_002487	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CPATCC_002487	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CPATCC_002489	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CPATCC_002490	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CPATCC_002497	COG0516	GMP reductase activity
CPATCC_002497	COG0517	IMP dehydrogenase activity
CPATCC_002502	COG0501	Belongs to the peptidase M48B family
CPATCC_002503	COG0123	including yeast histone deacetylase and acetoin utilization protein
CPATCC_002541	COG2814	Major facilitator Superfamily
CPATCC_002550	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_002551	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CPATCC_002552	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CPATCC_002558	COG0515	serine threonine protein kinase
CPATCC_002558	COG2815	serine threonine protein kinase
CPATCC_002562	COG0515	serine threonine protein kinase
CPATCC_002562	COG2815	serine threonine protein kinase
CPATCC_002602	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CPATCC_002616	COG0822	iron-sulfur transferase activity
CPATCC_002633	COG0484	heat shock protein binding
CPATCC_002656	COG0123	including yeast histone deacetylase and acetoin utilization protein
CPATCC_002673	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CPATCC_002689	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CPATCC_002719	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CPATCC_002719	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CPATCC_002725	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
CPATCC_002756	COG0513	Belongs to the DEAD box helicase family
CPATCC_002773	COG1324	tolerance protein
CPATCC_002798	COG0322	excinuclease ABC activity
CPATCC_002801	COG0484	heat shock protein binding
CPATCC_002805	COG0545	Peptidyl-prolyl cis-trans isomerase
CPATCC_002871	COG0513	Belongs to the DEAD box helicase family
CPATCC_002884	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CPATCC_002885	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CPATCC_002911	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CPATCC_002936	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CPATCC_002941	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CPATCC_002963	COG0481	GTPase activity
CPATCC_002964	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CPATCC_003009	COG0049	tRNA binding
CPATCC_003012	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_003017	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CPATCC_003018	COG0417	DNA replication proofreading
CPATCC_003038	COG0174	glutamine synthetase
CPATCC_003087	COG0459	protein refolding
CPATCC_003114	COG2815	serine threonine protein kinase
CPATCC_003114	COG0515	serine threonine protein kinase
CPATCC_003116	COG0488	(ABC) transporter
CPATCC_003138	COG1131	(ABC) transporter
CPATCC_003164	COG0544	peptidyl-prolyl cis-trans isomerase activity
CPATCC_003181	COG0443	Heat shock 70 kDa protein
CPATCC_003194	COG0575	Belongs to the CDS family
CPATCC_003195	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CPATCC_003196	COG0039	L-malate dehydrogenase activity
CPATCC_003198	COG0039	L-malate dehydrogenase activity
CPATCC_003202	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CPATCC_003215	COG1643	Atp-dependent helicase
CPATCC_003240	COG0343	queuine tRNA-ribosyltransferase activity
CPATCC_003276	COG1643	Atp-dependent helicase
CPATCC_003293	COG0515	serine threonine protein kinase
CPATCC_003301	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CPATCC_003303	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_003309	COG0590	tRNA wobble adenosine to inosine editing
CPATCC_003330	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CPATCC_003330	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CPATCC_003331	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CPATCC_003343	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CPATCC_003360	COG2815	serine threonine protein kinase
CPATCC_003360	COG0515	serine threonine protein kinase
CPATCC_003361	COG1196	nuclear chromosome segregation
CPATCC_003361	COG1196	nuclear chromosome segregation
CPATCC_003365	COG1252	NADH dehydrogenase
CPATCC_003388	COG2255	four-way junction helicase activity
CPATCC_003390	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CPATCC_003400	COG0194	GDP metabolic process
CPATCC_003405	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CPATCC_003451	COG0542	response to heat
CPATCC_003454	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CPATCC_003457	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CPATCC_003460	COG1196	nuclear chromosome segregation
CPATCC_003464	COG4178	(ABC) transporter
CPATCC_003492	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CPATCC_003492	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CPATCC_003511	COG3961	Belongs to the TPP enzyme family
CPATCC_003518	COG0459	protein refolding
CPATCC_003546	COG0515	serine threonine protein kinase
CPATCC_003546	COG2815	serine threonine protein kinase
CPATCC_003569	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CPATCC_003569	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CPATCC_003572	COG0326	Molecular chaperone. Has ATPase activity
CPATCC_003577	COG0085	RNA polymerase activity
CPATCC_003578	COG0142	geranyltranstransferase activity
CPATCC_003593	COG0484	heat shock protein binding
CPATCC_003618	COG3118	belongs to the thioredoxin family
CPATCC_003632	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CPATCC_003641	COG0588	phosphoglycerate mutase activity
CPATCC_003665	COG1132	(ABC) transporter
CPATCC_003667	COG1132	(ABC) transporter
CPATCC_003675	COG0513	Belongs to the DEAD box helicase family
CPATCC_003725	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
CPATCC_003731	COG0515	serine threonine protein kinase
CPATCC_003732	COG0051	transcription antitermination factor activity, RNA binding
CPATCC_003747	COG0756	dUTP diphosphatase activity
CPATCC_003755	COG1490	D-aminoacyl-tRNA deacylase activity
CPATCC_003760	COG1185	polyribonucleotide nucleotidyltransferase activity
CPATCC_003801	COG0085	RNA polymerase activity
CPATCC_003828	COG0017	Asparaginyl-tRNA synthetase
CPATCC_003830	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CPATCC_003843	COG0123	including yeast histone deacetylase and acetoin utilization protein
CPATCC_003861	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CPATCC_003882	COG0513	Belongs to the DEAD box helicase family
CPATCC_003887	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CPATCC_003893	COG0523	cobalamin synthesis protein
CPATCC_003896	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
CPATCC_003907	COG0423	glycine-tRNA ligase activity
CPATCC_003948	COG1501	Belongs to the glycosyl hydrolase 31 family
CPATCC_003964	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CPATCC_003980	COG0515	serine threonine protein kinase
CPATCC_003980	COG2815	serine threonine protein kinase
CPATCC_003985	COG1454	alcohol dehydrogenase
CPATCC_004018	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CPATCC_004021	COG1444	tRNA N-acetyltransferase activity
CPATCC_004057	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CPATCC_004077	COG4581	dead DEAH box helicase
CPATCC_004084	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CPATCC_004093	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
CPATCC_004097	COG0493	'glutamate synthase
CPATCC_004104	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_004110	COG0484	heat shock protein binding
CPATCC_004122	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CPATCC_004132	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CPATCC_004142	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_004142	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_004147	COG0525	valine-tRNA ligase activity
CPATCC_004152	COG0489	protein tyrosine kinase activity
CPATCC_004169	COG0484	heat shock protein binding
CPATCC_004187	COG2264	protein methyltransferase activity
CPATCC_004188	COG0308	aminopeptidase N
CPATCC_004192	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPATCC_004192	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPATCC_004232	COG0484	heat shock protein binding
CPATCC_004252	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CPATCC_004269	COG1643	Atp-dependent helicase
CPATCC_004284	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
CPATCC_004330	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_004330	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CPATCC_004343	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CPATCC_004349	COG2264	protein methyltransferase activity
CPATCC_004371	COG0514	ATP-dependent DNA helicase (RecQ)
CPATCC_004407	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY