Krodi_0001 SM00382 ATPases associated with a variety of cellular activities Krodi_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Krodi_0006 SM00938 Nitrogen regulatory protein P-II Krodi_0008 SM00226 Low molecular weight phosphatase family Krodi_0016 SM00028 Tetratricopeptide repeats Krodi_0019 SM00464 Found in ATP-dependent protease La (LON) Krodi_0027 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Krodi_0029 SM00871 Bacterial transcription activator, effector binding domain Krodi_0035 SM00257 Lysin motif Krodi_0038 SM00344 helix_turn_helix ASNC type Krodi_0046 SM00382 ATPases associated with a variety of cellular activities Krodi_0046 SM00962 SRP54-type protein, GTPase domain Krodi_0046 SM00963 SRP54-type protein, helical bundle domain Krodi_0051 SM00382 ATPases associated with a variety of cellular activities Krodi_0053 SM00327 von Willebrand factor (vWF) type A domain Krodi_0078 SM00646 Krodi_0078 Krodi_0106 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Krodi_0113 SM00710 Parallel beta-helix repeats Krodi_0117 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Krodi_0117 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Krodi_0122 SM00860 SMI1 / KNR4 family Krodi_0137 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Krodi_0138 SM00937 Krodi_0138 Krodi_0142 SM00248 ankyrin repeats Krodi_0149 SM01230 Krodi_0149 Krodi_0150 SM01230 Krodi_0150 Krodi_0152 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_0152 SM00954 Region found in RelA / SpoT proteins Krodi_0154 SM00788 Adenylosuccinate synthetase Krodi_0173 SM00382 ATPases associated with a variety of cellular activities Krodi_0185 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Krodi_0186 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Krodi_0198 SM00344 helix_turn_helix ASNC type Krodi_0210 SM00843 Krodi_0210 Krodi_0228 SM00028 Tetratricopeptide repeats Krodi_0231 SM00631 Krodi_0231 Krodi_0232 SM00382 ATPases associated with a variety of cellular activities Krodi_0237 SM00327 von Willebrand factor (vWF) type A domain Krodi_0242 SM00732 Likely ribonuclease with RNase H fold. Krodi_0247 SM00316 Ribosomal protein S1-like RNA-binding domain Krodi_0265 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Krodi_0269 SM00382 ATPases associated with a variety of cellular activities Krodi_0269 SM00464 Found in ATP-dependent protease La (LON) Krodi_0281 SM00642 Alpha-amylase domain Krodi_0296 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Krodi_0300 SM00014 Acid phosphatase homologues Krodi_0309 SM00345 helix_turn_helix gluconate operon transcriptional repressor Krodi_0309 SM00895 Krodi_0309 Krodi_0311 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Krodi_0317 SM00710 Parallel beta-helix repeats Krodi_0322 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Krodi_0323 SM00382 ATPases associated with a variety of cellular activities Krodi_0323 SM00448 cheY-homologous receiver domain Krodi_0324 SM00387 Histidine kinase-like ATPases Krodi_0324 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0327 SM00060 Fibronectin type 3 domain Krodi_0327 SM00137 Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others) Krodi_0327 SM00631 Krodi_0327 Krodi_0329 SM00560 LamG-like jellyroll fold domain Krodi_0339 SM00797 Allophanate hydrolase subunit 2 Krodi_0340 SM00796 Allophanate hydrolase subunit 1 Krodi_0343 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Krodi_0343 SM00387 Histidine kinase-like ATPases Krodi_0344 SM00382 ATPases associated with a variety of cellular activities Krodi_0345 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Krodi_0347 SM00977 TilS substrate C-terminal domain Krodi_0356 SM00342 helix_turn_helix, arabinose operon control protein Krodi_0359 SM00448 cheY-homologous receiver domain Krodi_0360 SM00448 cheY-homologous receiver domain Krodi_0361 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Krodi_0361 SM00387 Histidine kinase-like ATPases Krodi_0361 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0362 SM00091 PAS domain Krodi_0362 SM00138 Methyltransferase, chemotaxis proteins Krodi_0362 SM00387 Histidine kinase-like ATPases Krodi_0362 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0363 SM00663 RNA polymerase I subunit A N-terminus Krodi_0368 SM00649 Ribosomal protein L11/L12 Krodi_0369 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Krodi_0369 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Krodi_0380 SM00341 Helicase and RNase D C-terminal Krodi_0380 SM00487 DEAD-like helicases superfamily Krodi_0380 SM00490 helicase superfamily c-terminal domain Krodi_0380 SM00956 Krodi_0380 Krodi_0385 SM00382 ATPases associated with a variety of cellular activities Krodi_0389 SM00448 cheY-homologous receiver domain Krodi_0389 SM00850 LytTr DNA-binding domain Krodi_0391 SM00840 Krodi_0391 Krodi_0392 SM01234 Krodi_0392 Krodi_0398 SM00852 Probable molybdopterin binding domain Krodi_0401 SM00479 Krodi_0401 Krodi_0406 SM00493 Krodi_0406 Krodi_0412 SM00465 GIY-YIG type nucleases (URI domain) Krodi_0412 SM00479 Krodi_0412 Krodi_0415 SM00448 cheY-homologous receiver domain Krodi_0415 SM00862 Transcriptional regulatory protein, C terminal Krodi_0416 SM00387 Histidine kinase-like ATPases Krodi_0416 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0424 SM01409 Krodi_0424 Krodi_0426 SM01130 Krodi_0426 Krodi_0432 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Krodi_0432 SM00292 breast cancer carboxy-terminal domain Krodi_0432 SM00532 Ligase N family Krodi_0448 SM00530 Helix-turn-helix XRE-family like proteins Krodi_0453 SM00382 ATPases associated with a variety of cellular activities Krodi_0459 SM00470 ParB-like nuclease domain Krodi_0467 SM00853 MutL C terminal dimerisation domain Krodi_0467 SM01340 Krodi_0467 Krodi_0470 SM00028 Tetratricopeptide repeats Krodi_0474 SM00836 DALR anticodon binding domain Krodi_0474 SM01016 Arginyl tRNA synthetase N terminal dom Krodi_0483 SM00967 RNA 2'-O ribose methyltransferase substrate binding Krodi_0485 SM00387 Histidine kinase-like ATPases Krodi_0485 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0485 SM00448 cheY-homologous receiver domain Krodi_0493 SM00530 Helix-turn-helix XRE-family like proteins Krodi_0504 SM00830 Chorismate mutase type II Krodi_0509 SM00382 ATPases associated with a variety of cellular activities Krodi_0510 SM01021 Bacteriorhodopsin-like protein Krodi_0511 SM01387 Krodi_0511 Krodi_0512 SM00316 Ribosomal protein S1-like RNA-binding domain Krodi_0512 SM00322 K homology RNA-binding domain Krodi_0524 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Krodi_0547 SM00028 Tetratricopeptide repeats Krodi_0552 SM01001 AIR carboxylase Krodi_0567 SM00098 Alkaline phosphatase homologues Krodi_0569 SM00382 ATPases associated with a variety of cellular activities Krodi_0587 SM00382 ATPases associated with a variety of cellular activities Krodi_0591 SM00382 ATPases associated with a variety of cellular activities Krodi_0598 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Krodi_0601 SM00477 DNA/RNA non-specific endonuclease Krodi_0601 SM00892 DNA/RNA non-specific endonuclease Krodi_0603 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Krodi_0603 SM00245 tail specific protease Krodi_0615 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_0615 SM01091 Transporter associated domain Krodi_0618 SM00028 Tetratricopeptide repeats Krodi_0632 SM00450 Rhodanese Homology Domain Krodi_0646 SM00387 Histidine kinase-like ATPases Krodi_0646 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0646 SM00448 cheY-homologous receiver domain Krodi_0661 SM00878 Biotin carboxylase C-terminal domain Krodi_0677 SM00450 Rhodanese Homology Domain Krodi_0680 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Krodi_0680 SM00474 3'-5' exonuclease Krodi_0680 SM00475 5'-3' exonuclease Krodi_0680 SM00482 DNA polymerase A domain Krodi_0705 SM00421 helix_turn_helix, Lux Regulon Krodi_0705 SM00448 cheY-homologous receiver domain Krodi_0734 SM00900 Krodi_0734 Krodi_0749 SM01018 B12 binding domain Krodi_0761 SM00387 Histidine kinase-like ATPases Krodi_0761 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0762 SM00448 cheY-homologous receiver domain Krodi_0762 SM00862 Transcriptional regulatory protein, C terminal Krodi_0772 SM00861 Transketolase, pyrimidine binding domain Krodi_0773 SM00893 Electron transfer flavoprotein domain Krodi_0774 SM00893 Electron transfer flavoprotein domain Krodi_0788 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Krodi_0790 SM00530 Helix-turn-helix XRE-family like proteins Krodi_0800 SM00409 Immunoglobulin Krodi_0802 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Krodi_0802 SM00534 ATPase domain of DNA mismatch repair MUTS family Krodi_0823 SM00382 ATPases associated with a variety of cellular activities Krodi_0823 SM00994 ClpX C4-type zinc finger Krodi_0823 SM01086 C-terminal, D2-small domain, of ClpB protein Krodi_0836 SM00935 Outer membrane protein (OmpH-like) Krodi_0837 SM00935 Outer membrane protein (OmpH-like) Krodi_0839 SM00448 cheY-homologous receiver domain Krodi_0839 SM00850 LytTr DNA-binding domain Krodi_0840 SM00028 Tetratricopeptide repeats Krodi_0844 SM00932 Scaffold protein Nfu/NifU N terminal Krodi_0851 SM00479 Krodi_0851 Krodi_0851 SM00481 DNA polymerase alpha chain like domain Krodi_0854 SM00028 Tetratricopeptide repeats Krodi_0857 SM00861 Transketolase, pyrimidine binding domain Krodi_0885 SM01130 Krodi_0885 Krodi_0886 SM00342 helix_turn_helix, arabinose operon control protein Krodi_0887 SM00448 cheY-homologous receiver domain Krodi_0888 SM00387 Histidine kinase-like ATPases Krodi_0888 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0889 SM00448 cheY-homologous receiver domain Krodi_0891 SM00534 ATPase domain of DNA mismatch repair MUTS family Krodi_0901 SM00028 Tetratricopeptide repeats Krodi_0901 SM00387 Histidine kinase-like ATPases Krodi_0901 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0901 SM00448 cheY-homologous receiver domain Krodi_0904 SM00878 Biotin carboxylase C-terminal domain Krodi_0906 SM00341 Helicase and RNase D C-terminal Krodi_0906 SM00487 DEAD-like helicases superfamily Krodi_0906 SM00490 helicase superfamily c-terminal domain Krodi_0906 SM00956 Krodi_0906 Krodi_0910 SM00387 Histidine kinase-like ATPases Krodi_0910 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0912 SM00448 cheY-homologous receiver domain Krodi_0913 SM00448 cheY-homologous receiver domain Krodi_0914 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Krodi_0915 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_0915 SM00876 Biotin and Thiamin Synthesis associated domain Krodi_0916 SM00825 Beta-ketoacyl synthase Krodi_0922 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Krodi_0925 SM00530 Helix-turn-helix XRE-family like proteins Krodi_0927 SM00382 ATPases associated with a variety of cellular activities Krodi_0935 SM00421 helix_turn_helix, Lux Regulon Krodi_0936 SM00382 ATPases associated with a variety of cellular activities Krodi_0949 SM00100 Cyclic nucleotide-monophosphate binding domain Krodi_0949 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_0950 SM00479 Krodi_0950 Krodi_0952 SM00248 ankyrin repeats Krodi_0962 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Krodi_0962 SM00245 tail specific protease Krodi_0966 SM00387 Histidine kinase-like ATPases Krodi_0966 SM00388 His Kinase A (phosphoacceptor) domain Krodi_0966 SM00448 cheY-homologous receiver domain Krodi_0967 SM00173 Ras subfamily of RAS small GTPases Krodi_0967 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases Krodi_0967 SM00175 Rab subfamily of small GTPases Krodi_0973 SM00563 Phosphate acyltransferases Krodi_0975 SM00448 cheY-homologous receiver domain Krodi_0976 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Krodi_0976 SM00091 PAS domain Krodi_0976 SM00387 Histidine kinase-like ATPases Krodi_0978 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Krodi_0986 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_0986 SM00924 MgtE intracellular N domain Krodi_0987 SM00650 Ribosomal RNA adenine dimethylases Krodi_0989 SM00028 Tetratricopeptide repeats Krodi_0994 SM00752 Horizontally Transferred TransMembrane Domain Krodi_0995 SM00904 Riboflavin kinase Krodi_0998 SM01400 Krodi_0998 Krodi_1006 SM00487 DEAD-like helicases superfamily Krodi_1006 SM00490 helicase superfamily c-terminal domain Krodi_1008 SM00316 Ribosomal protein S1-like RNA-binding domain Krodi_1008 SM00732 Likely ribonuclease with RNase H fold. Krodi_1012 SM00530 Helix-turn-helix XRE-family like proteins Krodi_1023 SM00487 DEAD-like helicases superfamily Krodi_1023 SM00490 helicase superfamily c-terminal domain Krodi_1023 SM00982 Krodi_1023 Krodi_1023 SM01058 CarD-like/TRCF domain Krodi_1031 SM00271 DnaJ molecular chaperone homology domain Krodi_1033 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_1038 SM00387 Histidine kinase-like ATPases Krodi_1038 SM00388 His Kinase A (phosphoacceptor) domain Krodi_1045 SM00342 helix_turn_helix, arabinose operon control protein Krodi_1054 SM00487 DEAD-like helicases superfamily Krodi_1055 SM01004 Delta-aminolevulinic acid dehydratase Krodi_1059 SM00028 Tetratricopeptide repeats Krodi_1059 SM00387 Histidine kinase-like ATPases Krodi_1059 SM00388 His Kinase A (phosphoacceptor) domain Krodi_1059 SM00448 cheY-homologous receiver domain Krodi_1064 SM00060 Fibronectin type 3 domain Krodi_1064 SM00137 Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others) Krodi_1065 SM00382 ATPases associated with a variety of cellular activities Krodi_1066 SM00882 Coenzyme A transferase Krodi_1067 SM00882 Coenzyme A transferase Krodi_1071 SM00450 Rhodanese Homology Domain Krodi_1072 SM00382 ATPases associated with a variety of cellular activities Krodi_1075 SM00563 Phosphate acyltransferases Krodi_1089 SM00448 cheY-homologous receiver domain Krodi_1090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Krodi_1090 SM00387 Histidine kinase-like ATPases Krodi_1095 SM00465 GIY-YIG type nucleases (URI domain) Krodi_1100 SM00387 Histidine kinase-like ATPases Krodi_1100 SM00388 His Kinase A (phosphoacceptor) domain Krodi_1101 SM00358 Double-stranded RNA binding motif Krodi_1101 SM00535 Ribonuclease III family Krodi_1102 SM00825 Beta-ketoacyl synthase Krodi_1135 SM01235 Krodi_1135 Krodi_1138 SM00342 helix_turn_helix, arabinose operon control protein Krodi_1146 SM00849 Metallo-beta-lactamase superfamily Krodi_1153 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Krodi_1153 SM00245 tail specific protease Krodi_1159 SM00316 Ribosomal protein S1-like RNA-binding domain Krodi_1159 SM00357 Cold shock protein domain Krodi_1159 SM00955 Krodi_1159 Krodi_1163 SM00905 Dihydroneopterin aldolase Krodi_1169 SM00244 prohibitin homologues Krodi_1174 SM01228 Krodi_1174 Krodi_1176 SM00935 Outer membrane protein (OmpH-like) Krodi_1180 SM00257 Lysin motif Krodi_1201 SM01209 Krodi_1201 Krodi_1201 SM01210 Krodi_1201 Krodi_1207 SM00382 ATPases associated with a variety of cellular activities Krodi_1219 SM00382 ATPases associated with a variety of cellular activities Krodi_1220 SM00028 Tetratricopeptide repeats Krodi_1234 SM00028 Tetratricopeptide repeats Krodi_1242 SM00257 Lysin motif Krodi_1246 SM00072 Guanylate kinase homologues. Krodi_1269 SM00903 Flavin reductase like domain Krodi_1283 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_1305 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Krodi_1313 SM01005 Alanine racemase, C-terminal domain Krodi_1315 SM00859 Semialdehyde dehydrogenase, NAD binding domain Krodi_1316 SM01059 Chloramphenicol acetyltransferase Krodi_1325 SM00947 Carbonic anhydrase Krodi_1328 SM00028 Tetratricopeptide repeats Krodi_1330 SM00028 Tetratricopeptide repeats Krodi_1331 SM00327 von Willebrand factor (vWF) type A domain Krodi_1332 SM00327 von Willebrand factor (vWF) type A domain Krodi_1340 SM00387 Histidine kinase-like ATPases Krodi_1350 SM00679 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Krodi_1351 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Krodi_1351 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Krodi_1370 SM00996 S-adenosyl-L-homocysteine hydrolase Krodi_1370 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Krodi_1373 SM00344 helix_turn_helix ASNC type Krodi_1380 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_1380 SM01091 Transporter associated domain Krodi_1383 SM00342 helix_turn_helix, arabinose operon control protein Krodi_1384 SM00478 endonuclease III Krodi_1385 SM00411 bacterial (prokaryotic) histone like domain Krodi_1391 SM00529 Helix-turn-helix diphteria tox regulatory element Krodi_1391 SM00899 Krodi_1391 Krodi_1394 SM00382 ATPases associated with a variety of cellular activities Krodi_1400 SM00899 Krodi_1400 Krodi_1403 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Krodi_1408 SM00028 Tetratricopeptide repeats Krodi_1413 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_1416 SM01359 Krodi_1416 Krodi_1416 SM01360 Krodi_1416 Krodi_1419 SM01118 Krodi_1419 Krodi_1422 SM00859 Semialdehyde dehydrogenase, NAD binding domain Krodi_1434 SM00640 Glycosyl hydrolases family 32 Krodi_1435 SM00354 helix_turn _helix lactose operon repressor Krodi_1447 SM00642 Alpha-amylase domain Krodi_1453 SM00357 Cold shock protein domain Krodi_1466 SM00448 cheY-homologous receiver domain Krodi_1466 SM00862 Transcriptional regulatory protein, C terminal Krodi_1467 SM00387 Histidine kinase-like ATPases Krodi_1467 SM00388 His Kinase A (phosphoacceptor) domain Krodi_1480 SM00530 Helix-turn-helix XRE-family like proteins Krodi_1492 SM00382 ATPases associated with a variety of cellular activities Krodi_1494 SM00849 Metallo-beta-lactamase superfamily Krodi_1510 SM01011 Aminopeptidase P, N-terminal domain Krodi_1511 SM00947 Carbonic anhydrase Krodi_1521 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_1523 SM00861 Transketolase, pyrimidine binding domain Krodi_1529 SM00363 S4 RNA-binding domain Krodi_1531 SM01259 Krodi_1531 Krodi_1539 SM00382 ATPases associated with a variety of cellular activities Krodi_1563 SM00382 ATPases associated with a variety of cellular activities Krodi_1570 SM00919 Malic enzyme, NAD binding domain Krodi_1570 SM01274 Krodi_1570 Krodi_1571 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Krodi_1580 SM00849 Metallo-beta-lactamase superfamily Krodi_1592 SM00382 ATPases associated with a variety of cellular activities Krodi_1607 SM00422 helix_turn_helix, mercury resistance Krodi_1609 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Krodi_1611 SM00450 Rhodanese Homology Domain Krodi_1618 SM00047 Lysozyme subfamily 2 Krodi_1618 SM00257 Lysin motif Krodi_1644 SM00481 DNA polymerase alpha chain like domain Krodi_1653 SM00268 Actin Krodi_1654 SM00798 AICARFT/IMPCHase bienzyme Krodi_1654 SM00851 MGS-like domain Krodi_1669 SM00883 Chaperonin 10 Kd subunit Krodi_1674 SM00382 ATPases associated with a variety of cellular activities Krodi_1675 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_1680 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Krodi_1680 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Krodi_1680 SM00493 Krodi_1680 Krodi_1688 SM00382 ATPases associated with a variety of cellular activities Krodi_1704 SM00487 DEAD-like helicases superfamily Krodi_1718 SM00849 Metallo-beta-lactamase superfamily Krodi_1723 SM01057 Eukaryotic-type carbonic anhydrase Krodi_1728 SM00450 Rhodanese Homology Domain Krodi_1729 SM00450 Rhodanese Homology Domain Krodi_1730 SM00450 Rhodanese Homology Domain Krodi_1730 SM00849 Metallo-beta-lactamase superfamily Krodi_1731 SM00450 Rhodanese Homology Domain Krodi_1731 SM00849 Metallo-beta-lactamase superfamily Krodi_1733 SM00419 helix_turn_helix, cAMP Regulatory protein Krodi_1746 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Krodi_1752 SM00235 Zinc-dependent metalloprotease Krodi_1756 SM00870 Krodi_1756 Krodi_1757 SM00710 Parallel beta-helix repeats Krodi_1774 SM00028 Tetratricopeptide repeats Krodi_1774 SM00387 Histidine kinase-like ATPases Krodi_1774 SM00388 His Kinase A (phosphoacceptor) domain Krodi_1774 SM00448 cheY-homologous receiver domain Krodi_1775 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Krodi_1776 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_1779 SM00382 ATPases associated with a variety of cellular activities Krodi_1788 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Krodi_1799 SM00382 ATPases associated with a variety of cellular activities Krodi_1814 SM00382 ATPases associated with a variety of cellular activities Krodi_1816 SM00967 RNA 2'-O ribose methyltransferase substrate binding Krodi_1829 SM00838 Elongation factor G C-terminus Krodi_1829 SM00889 Elongation factor G, domain IV Krodi_1830 SM01403 Krodi_1830 Krodi_1834 SM01382 Krodi_1834 Krodi_1834 SM01383 Krodi_1834 Krodi_1837 SM00322 K homology RNA-binding domain Krodi_1841 SM01374 Krodi_1841 Krodi_1842 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Krodi_1856 SM00363 S4 RNA-binding domain Krodi_1856 SM01390 Krodi_1856 Krodi_1857 SM00662 RNA polymerases D Krodi_1860 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Krodi_1862 SM01192 Krodi_1862 Krodi_1862 SM01193 Krodi_1862 Krodi_1864 SM00871 Bacterial transcription activator, effector binding domain Krodi_1875 SM00400 zinc finger Krodi_1875 SM00493 Krodi_1875 Krodi_1876 SM00421 helix_turn_helix, Lux Regulon Krodi_1876 SM00448 cheY-homologous receiver domain Krodi_1886 SM00740 Krodi_1886 Krodi_1894 SM00842 Cell division protein FtsA Krodi_1895 SM00864 Tubulin/FtsZ family, GTPase domain Krodi_1895 SM00865 Tubulin/FtsZ family, C-terminal domain Krodi_1898 SM00248 ankyrin repeats Krodi_1903 SM00028 Tetratricopeptide repeats Krodi_1927 SM00387 Histidine kinase-like ATPases Krodi_1927 SM00433 TopoisomeraseII Krodi_1931 SM00382 ATPases associated with a variety of cellular activities Krodi_1931 SM00962 SRP54-type protein, GTPase domain Krodi_1931 SM00963 SRP54-type protein, helical bundle domain Krodi_1934 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_1936 SM00631 Krodi_1936 Krodi_1948 SM00422 helix_turn_helix, mercury resistance Krodi_1951 SM00363 S4 RNA-binding domain Krodi_1954 SM00861 Transketolase, pyrimidine binding domain Krodi_1964 SM00363 S4 RNA-binding domain Krodi_1965 SM00740 Krodi_1965 Krodi_1978 SM00867 YceI-like domain Krodi_1979 SM00347 helix_turn_helix multiple antibiotic resistance protein Krodi_1982 SM00450 Rhodanese Homology Domain Krodi_1982 SM00849 Metallo-beta-lactamase superfamily Krodi_1983 SM00450 Rhodanese Homology Domain Krodi_1984 SM00450 Rhodanese Homology Domain Krodi_2013 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Krodi_2015 SM00867 YceI-like domain Krodi_2017 SM00271 DnaJ molecular chaperone homology domain Krodi_2018 SM00382 ATPases associated with a variety of cellular activities Krodi_2022 SM00382 ATPases associated with a variety of cellular activities Krodi_2022 SM00448 cheY-homologous receiver domain Krodi_2029 SM00014 Acid phosphatase homologues Krodi_2030 SM00382 ATPases associated with a variety of cellular activities Krodi_2037 SM00957 SecA DEAD-like domain Krodi_2037 SM00958 SecA preprotein cross-linking domain Krodi_2041 SM00382 ATPases associated with a variety of cellular activities Krodi_2043 SM00382 ATPases associated with a variety of cellular activities Krodi_2048 SM00382 ATPases associated with a variety of cellular activities Krodi_2091 SM00382 ATPases associated with a variety of cellular activities Krodi_2101 SM00838 Elongation factor G C-terminus Krodi_2102 SM00562 Krodi_2102 Krodi_2113 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Krodi_2117 SM00981 Krodi_2117 Krodi_2135 SM00946 Prolyl-tRNA synthetase, C-terminal Krodi_2139 SM00642 Alpha-amylase domain Krodi_2141 SM00411 bacterial (prokaryotic) histone like domain Krodi_2143 SM00487 DEAD-like helicases superfamily Krodi_2143 SM00490 helicase superfamily c-terminal domain Krodi_2149 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_2156 SM00316 Ribosomal protein S1-like RNA-binding domain Krodi_2167 SM00322 K homology RNA-binding domain Krodi_2167 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_2170 SM00859 Semialdehyde dehydrogenase, NAD binding domain Krodi_2178 SM01329 Krodi_2178 Krodi_2197 SM00487 DEAD-like helicases superfamily Krodi_2197 SM00490 helicase superfamily c-terminal domain Krodi_2201 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Krodi_2207 SM00382 ATPases associated with a variety of cellular activities Krodi_2212 SM00245 tail specific protease Krodi_2220 SM01021 Bacteriorhodopsin-like protein Krodi_2224 SM00357 Cold shock protein domain Krodi_2224 SM00382 ATPases associated with a variety of cellular activities Krodi_2224 SM00959 Rho termination factor, N-terminal domain Krodi_2227 SM00419 helix_turn_helix, cAMP Regulatory protein Krodi_2233 SM00530 Helix-turn-helix XRE-family like proteins Krodi_2234 SM00631 Krodi_2234 Krodi_2235 SM00344 helix_turn_helix ASNC type Krodi_2248 SM00028 Tetratricopeptide repeats Krodi_2269 SM00342 helix_turn_helix, arabinose operon control protein Krodi_2277 SM00530 Helix-turn-helix XRE-family like proteins Krodi_2282 SM00563 Phosphate acyltransferases Krodi_2311 SM01034 Sensors of blue-light using FAD Krodi_2315 SM00487 DEAD-like helicases superfamily Krodi_2329 SM00465 GIY-YIG type nucleases (URI domain) Krodi_2332 SM01034 Sensors of blue-light using FAD Krodi_2347 SM00271 DnaJ molecular chaperone homology domain Krodi_2349 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Krodi_2349 SM00091 PAS domain Krodi_2349 SM00387 Histidine kinase-like ATPases Krodi_2349 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2350 SM00100 Cyclic nucleotide-monophosphate binding domain Krodi_2350 SM00419 helix_turn_helix, cAMP Regulatory protein Krodi_2350 SM00448 cheY-homologous receiver domain Krodi_2362 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_2376 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_2377 SM00448 cheY-homologous receiver domain Krodi_2379 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Krodi_2379 SM00091 PAS domain Krodi_2379 SM00387 Histidine kinase-like ATPases Krodi_2379 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2380 SM00897 FIST N domain Krodi_2380 SM01204 Krodi_2380 Krodi_2381 SM00387 Histidine kinase-like ATPases Krodi_2381 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2383 SM00448 cheY-homologous receiver domain Krodi_2383 SM00850 LytTr DNA-binding domain Krodi_2387 SM00028 Tetratricopeptide repeats Krodi_2405 SM00448 cheY-homologous receiver domain Krodi_2405 SM00850 LytTr DNA-binding domain Krodi_2407 SM00825 Beta-ketoacyl synthase Krodi_2407 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Krodi_2408 SM00822 Krodi_2408 Krodi_2409 SM00825 Beta-ketoacyl synthase Krodi_2409 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Krodi_2425 SM00935 Outer membrane protein (OmpH-like) Krodi_2434 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Krodi_2434 SM00091 PAS domain Krodi_2434 SM00387 Histidine kinase-like ATPases Krodi_2434 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2434 SM00448 cheY-homologous receiver domain Krodi_2438 SM00028 Tetratricopeptide repeats Krodi_2465 SM00631 Krodi_2465 Krodi_2473 SM00850 LytTr DNA-binding domain Krodi_2491 SM00382 ATPases associated with a variety of cellular activities Krodi_2508 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Krodi_2508 SM00534 ATPase domain of DNA mismatch repair MUTS family Krodi_2509 SM00986 Uracil DNA glycosylase superfamily Krodi_2509 SM00987 UreE urease accessory protein, C-terminal domain Krodi_2519 SM00861 Transketolase, pyrimidine binding domain Krodi_2528 SM00825 Beta-ketoacyl synthase Krodi_2531 SM00387 Histidine kinase-like ATPases Krodi_2531 SM00433 TopoisomeraseII Krodi_2532 SM00434 DNA Topoisomerase IV Krodi_2539 SM00342 helix_turn_helix, arabinose operon control protein Krodi_2540 SM00342 helix_turn_helix, arabinose operon control protein Krodi_2541 SM00448 cheY-homologous receiver domain Krodi_2542 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_2546 SM00841 Elongation factor P, C-terminal Krodi_2546 SM01185 Krodi_2546 Krodi_2549 SM00881 CoA binding domain Krodi_2550 SM00822 Krodi_2550 Krodi_2552 SM00244 prohibitin homologues Krodi_2566 SM00382 ATPases associated with a variety of cellular activities Krodi_2569 SM00712 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. Krodi_2570 SM00382 ATPases associated with a variety of cellular activities Krodi_2573 SM01323 Krodi_2573 Krodi_2579 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Krodi_2582 SM00257 Lysin motif Krodi_2591 SM00487 DEAD-like helicases superfamily Krodi_2591 SM00490 helicase superfamily c-terminal domain Krodi_2599 SM00487 DEAD-like helicases superfamily Krodi_2599 SM00490 helicase superfamily c-terminal domain Krodi_2600 SM00448 cheY-homologous receiver domain Krodi_2600 SM00850 LytTr DNA-binding domain Krodi_2605 SM00487 DEAD-like helicases superfamily Krodi_2605 SM00490 helicase superfamily c-terminal domain Krodi_2613 SM00382 ATPases associated with a variety of cellular activities Krodi_2613 SM01086 C-terminal, D2-small domain, of ClpB protein Krodi_2622 SM00357 Cold shock protein domain Krodi_2623 SM00091 PAS domain Krodi_2623 SM00387 Histidine kinase-like ATPases Krodi_2624 SM00271 DnaJ molecular chaperone homology domain Krodi_2625 SM00487 DEAD-like helicases superfamily Krodi_2625 SM00490 helicase superfamily c-terminal domain Krodi_2629 SM00822 Krodi_2629 Krodi_2631 SM00382 ATPases associated with a variety of cellular activities Krodi_2635 SM00829 Enoylreductase Krodi_2640 SM00357 Cold shock protein domain Krodi_2643 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Krodi_2648 SM00450 Rhodanese Homology Domain Krodi_2649 SM00876 Biotin and Thiamin Synthesis associated domain Krodi_2656 SM00387 Histidine kinase-like ATPases Krodi_2657 SM00028 Tetratricopeptide repeats Krodi_2657 SM00387 Histidine kinase-like ATPases Krodi_2657 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2657 SM00448 cheY-homologous receiver domain Krodi_2669 SM00487 DEAD-like helicases superfamily Krodi_2669 SM00490 helicase superfamily c-terminal domain Krodi_2675 SM00382 ATPases associated with a variety of cellular activities Krodi_2677 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Krodi_2677 SM00387 Histidine kinase-like ATPases Krodi_2677 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2683 SM00849 Metallo-beta-lactamase superfamily Krodi_2687 SM00478 endonuclease III Krodi_2696 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Krodi_2708 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Krodi_2709 SM00829 Enoylreductase Krodi_2712 SM00054 EF-hand, calcium binding motif Krodi_2713 SM00465 GIY-YIG type nucleases (URI domain) Krodi_2713 SM00479 Krodi_2713 Krodi_2717 SM00357 Cold shock protein domain Krodi_2722 SM00382 ATPases associated with a variety of cellular activities Krodi_2723 SM00886 Stress responsive A/B Barrel Domain Krodi_2731 SM01211 Krodi_2731 Krodi_2732 SM00631 Krodi_2732 Krodi_2738 SM00861 Transketolase, pyrimidine binding domain Krodi_2739 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_2742 SM00028 Tetratricopeptide repeats Krodi_2743 SM00434 DNA Topoisomerase IV Krodi_2744 SM00382 ATPases associated with a variety of cellular activities Krodi_2744 SM01086 C-terminal, D2-small domain, of ClpB protein Krodi_2747 SM00822 Krodi_2747 Krodi_2783 SM00984 UDP binding domain Krodi_2790 SM00984 UDP binding domain Krodi_2793 SM00563 Phosphate acyltransferases Krodi_2809 SM00357 Cold shock protein domain Krodi_2810 SM00363 S4 RNA-binding domain Krodi_2823 SM00387 Histidine kinase-like ATPases Krodi_2823 SM00388 His Kinase A (phosphoacceptor) domain Krodi_2824 SM00347 helix_turn_helix multiple antibiotic resistance protein Krodi_2829 SM00878 Biotin carboxylase C-terminal domain Krodi_2830 SM00487 DEAD-like helicases superfamily Krodi_2830 SM00490 helicase superfamily c-terminal domain Krodi_2838 SM00729 Elongator protein 3, MiaB family, Radical SAM Krodi_2846 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Krodi_2857 SM00855 Phosphoglycerate mutase family Krodi_2864 SM00642 Alpha-amylase domain Krodi_2870 SM00448 cheY-homologous receiver domain Krodi_2870 SM00850 LytTr DNA-binding domain Krodi_2876 SM00382 ATPases associated with a variety of cellular activities Krodi_2881 SM00100 Cyclic nucleotide-monophosphate binding domain Krodi_2881 SM00419 helix_turn_helix, cAMP Regulatory protein Krodi_2902 SM00487 DEAD-like helicases superfamily Krodi_2902 SM00490 helicase superfamily c-terminal domain Krodi_2904 SM00873 B3/4 domain Krodi_2904 SM00874 tRNA synthetase B5 domain Krodi_2904 SM00896 Ferredoxin-fold anticodon binding domain Krodi_2907 SM00382 ATPases associated with a variety of cellular activities Krodi_2917 SM00480 DNA polymerase III beta subunit Krodi_2938 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_2956 SM00116 Domain in cystathionine beta-synthase and other proteins. Krodi_2956 SM01240 Krodi_2956 Krodi_2959 SM00752 Horizontally Transferred TransMembrane Domain Krodi_2962 SM01235 Krodi_2962 Krodi_2963 SM00487 DEAD-like helicases superfamily Krodi_2963 SM00490 helicase superfamily c-terminal domain Krodi_2966 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Krodi_2967 SM00704 CDGSH-type zinc finger. Function unknown. Krodi_2968 SM00849 Metallo-beta-lactamase superfamily Krodi_2969 SM00487 DEAD-like helicases superfamily Krodi_2969 SM00490 helicase superfamily c-terminal domain Krodi_2971 SM00382 ATPases associated with a variety of cellular activities Krodi_2983 SM00822 Krodi_2983 Krodi_2988 SM00382 ATPases associated with a variety of cellular activities Krodi_2992 SM01350 Krodi_2992