locus-tag class description skT53_00010 PF00512 His Kinase A (phospho-acceptor) domain skT53_00010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_00010 PF13426 PAS domain skT53_00010 PF00989 PAS fold skT53_00010 PF13188 PAS domain skT53_00050 PF00563 EAL domain skT53_00050 PF00196 Bacterial regulatory proteins, luxR family skT53_00060 PF01740 STAS domain skT53_00090 PF01740 STAS domain skT53_00100 PF01227 GTP cyclohydrolase I skT53_00120 PF00106 short chain dehydrogenase skT53_00150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_00150 PF00672 HAMP domain skT53_00180 PF01575 MaoC like domain skT53_00210 PF13249 Squalene-hopene cyclase N-terminal domain skT53_00210 PF13243 Squalene-hopene cyclase C-terminal domain skT53_00220 PF13411 MerR HTH family regulatory protein skT53_00220 PF07739 TipAS antibiotic-recognition domain skT53_00250 PF08241 Methyltransferase domain skT53_00280 PF01925 Sulfite exporter TauE/SafE skT53_00290 PF17126 RsmF rRNA methyltransferase first C-terminal domain skT53_00290 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF skT53_00290 PF01189 16S rRNA methyltransferase RsmB/F skT53_00310 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain skT53_00310 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain skT53_00310 PF01488 Shikimate / quinate 5-dehydrogenase skT53_00320 PF01578 Cytochrome C assembly protein skT53_00330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_00330 PF14824 Sirohaem biosynthesis protein central skT53_00330 PF10414 Sirohaem synthase dimerisation region skT53_00340 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain skT53_00340 PF03900 Porphobilinogen deaminase, C-terminal domain skT53_00350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_00360 PF00490 Delta-aminolevulinic acid dehydratase skT53_00370 PF00202 Aminotransferase class-III skT53_00380 PF02896 PEP-utilising enzyme, TIM barrel domain skT53_00380 PF00391 PEP-utilising enzyme, mobile domain skT53_00380 PF05524 PEP-utilising enzyme, N-terminal skT53_00410 PF02627 Carboxymuconolactone decarboxylase family skT53_00440 PF00005 ABC transporter skT53_00440 PF12704 MacB-like periplasmic core domain skT53_00440 PF02687 FtsX-like permease family skT53_00470 PF03060 Nitronate monooxygenase skT53_00480 PF08264 Anticodon-binding domain of tRNA skT53_00480 PF10458 Valyl tRNA synthetase tRNA binding arm skT53_00480 PF00133 tRNA synthetases class I (I, L, M and V) skT53_00490 PF02875 Mur ligase family, glutamate ligase domain skT53_00490 PF08245 Mur ligase middle domain skT53_00500 PF01225 Mur ligase family, catalytic domain skT53_00500 PF02875 Mur ligase family, glutamate ligase domain skT53_00500 PF08245 Mur ligase middle domain skT53_00510 PF07501 G5 domain skT53_00510 PF03990 G5-linked-Ubiquitin-like domain skT53_00510 PF06725 3D domain skT53_00530 PF00206 Lyase skT53_00530 PF10415 Fumarase C C-terminus skT53_00540 PF10720 Protein of unknown function (DUF2515) skT53_00560 PF02545 Maf-like protein skT53_00570 PF04002 RadC-like JAB domain skT53_00590 PF04085 rod shape-determining protein MreC skT53_00610 PF00905 Penicillin binding protein transpeptidase domain skT53_00610 PF03717 Penicillin-binding Protein dimerisation domain skT53_00620 PF03775 Septum formation inhibitor MinC, C-terminal domain skT53_00630 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain skT53_00640 PF01098 Cell cycle protein skT53_00670 PF13545 Crp-like helix-turn-helix domain skT53_00670 PF00027 Cyclic nucleotide-binding domain skT53_00690 PF12146 Serine aminopeptidase, S33 skT53_00710 PF01476 LysM domain skT53_00710 PF00877 NlpC/P60 family skT53_00730 PF00082 Subtilase family skT53_00770 PF03591 AzlC protein skT53_00790 PF00676 Dehydrogenase E1 component skT53_00800 PF02779 Transketolase, pyrimidine binding domain skT53_00800 PF02780 Transketolase, C-terminal domain skT53_00810 PF02817 e3 binding domain skT53_00810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) skT53_00810 PF00364 Biotin-requiring enzyme skT53_00820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain skT53_00820 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_00860 PF02743 Cache domain skT53_00860 PF00672 HAMP domain skT53_00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_00890 PF00005 ABC transporter skT53_00910 PF05670 NFACT protein RNA binding domain skT53_00920 PF07690 Major Facilitator Superfamily skT53_00940 PF13538 UvrD-like helicase C-terminal domain skT53_00950 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_00960 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_00970 PF07282 Putative transposase DNA-binding domain skT53_00970 PF12323 Helix-turn-helix domain skT53_00970 PF01385 Probable transposase skT53_00990 PF06865 Pyrimidine/purine nucleoside phosphorylase skT53_01000 PF00689 Cation transporting ATPase, C-terminus skT53_01000 PF00690 Cation transporter/ATPase, N-terminus skT53_01020 PF08340 Domain of unknown function (DUF1732) skT53_01020 PF03755 YicC-like family, N-terminal region skT53_01030 PF04025 Domain of unknown function (DUF370) skT53_01040 PF00625 Guanylate kinase skT53_01050 PF01192 RNA polymerase Rpb6 skT53_01060 PF04127 DNA / pantothenate metabolism flavoprotein skT53_01060 PF02441 Flavoprotein skT53_01070 PF00271 Helicase conserved C-terminal domain skT53_01070 PF04851 Type III restriction enzyme, res subunit skT53_01070 PF18074 Primosomal protein N C-terminal domain skT53_01070 PF17764 3′ DNA-binding domain (3′BD) skT53_01070 PF18319 PriA DNA helicase Cys-rich region (CRR) domain skT53_01080 PF01327 Polypeptide deformylase skT53_01090 PF02911 Formyl transferase, C-terminal domain skT53_01090 PF00551 Formyl transferase skT53_01100 PF01189 16S rRNA methyltransferase RsmB/F skT53_01100 PF01029 NusB family skT53_01110 PF04055 Radical SAM superfamily skT53_01130 PF03793 PASTA domain skT53_01130 PF00069 Protein kinase domain skT53_01140 PF16745 RsgA N-terminal domain skT53_01140 PF03193 RsgA GTPase skT53_01150 PF00834 Ribulose-phosphate 3 epimerase family skT53_01160 PF00830 Ribosomal L28 family skT53_01170 PF03780 Asp23 family, cell envelope-related function skT53_01180 PF02734 DAK2 domain skT53_01180 PF13684 Dihydroxyacetone kinase family skT53_01190 PF17191 RecG wedge domain skT53_01190 PF00270 DEAD/DEAH box helicase skT53_01190 PF00271 Helicase conserved C-terminal domain skT53_01220 PF01467 Cytidylyltransferase-like skT53_01230 PF01734 Patatin-like phospholipase skT53_01240 PF05362 Lon protease (S16) C-terminal proteolytic domain skT53_01240 PF13180 PDZ domain skT53_01250 PF05636 HIGH Nucleotidyl Transferase skT53_01270 PF01783 Ribosomal L32p protein family skT53_01280 PF00269 Small, acid-soluble spore proteins, alpha/beta type skT53_01290 PF00106 short chain dehydrogenase skT53_01320 PF00781 Diacylglycerol kinase catalytic domain skT53_01330 PF03061 Thioesterase superfamily skT53_01340 PF02504 Fatty acid synthesis protein skT53_01350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III skT53_01350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal skT53_01360 PF00698 Acyl transferase domain skT53_01380 PF00550 Phosphopantetheine attachment site skT53_01390 PF02801 Beta-ketoacyl synthase, C-terminal domain skT53_01390 PF00109 Beta-ketoacyl synthase, N-terminal domain skT53_01400 PF00035 Double-stranded RNA binding motif skT53_01400 PF14622 Ribonuclease-III-like skT53_01430 PF00486 Transcriptional regulatory protein, C terminal skT53_01430 PF00072 Response regulator receiver domain skT53_01440 PF00512 His Kinase A (phospho-acceptor) domain skT53_01440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_01450 PF06470 SMC proteins Flexible Hinge Domain skT53_01450 PF02463 RecF/RecN/SMC N terminal domain skT53_01460 PF00448 SRP54-type protein, GTPase domain skT53_01460 PF02881 SRP54-type protein, helical bundle domain skT53_01470 PF04297 Putative helix-turn-helix protein, YlxM / p13 like skT53_01480 PF00448 SRP54-type protein, GTPase domain skT53_01480 PF02881 SRP54-type protein, helical bundle domain skT53_01480 PF02978 Signal peptide binding domain skT53_01490 PF00886 Ribosomal protein S16 skT53_01510 PF01782 RimM N-terminal domain skT53_01510 PF05239 PRC-barrel domain skT53_01520 PF01746 tRNA (Guanine-1)-methyltransferase skT53_01540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_01540 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_01540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_01550 PF00027 Cyclic nucleotide-binding domain skT53_01550 PF13545 Crp-like helix-turn-helix domain skT53_01580 PF03109 ABC1 family skT53_01610 PF04143 Sulphur transport skT53_01630 PF00582 Universal stress protein family skT53_01650 PF07690 Major Facilitator Superfamily skT53_01660 PF01814 Hemerythrin HHE cation binding domain skT53_01660 PF04405 Domain of Unknown function (DUF542) skT53_01670 PF00384 Molybdopterin oxidoreductase skT53_01670 PF01568 Molydopterin dinucleotide binding domain skT53_01670 PF14710 Respiratory nitrate reductase alpha N-terminal skT53_01680 PF14710 Respiratory nitrate reductase alpha N-terminal skT53_01680 PF00384 Molybdopterin oxidoreductase skT53_01680 PF01568 Molydopterin dinucleotide binding domain skT53_01690 PF01568 Molydopterin dinucleotide binding domain skT53_01690 PF14710 Respiratory nitrate reductase alpha N-terminal skT53_01690 PF00384 Molybdopterin oxidoreductase skT53_01700 PF14711 Respiratory nitrate reductase beta C-terminal skT53_01700 PF13247 4Fe-4S dicluster domain skT53_01710 PF02613 Nitrate reductase delta subunit skT53_01720 PF02665 Nitrate reductase gamma subunit skT53_01730 PF04055 Radical SAM superfamily skT53_01730 PF13186 Iron-sulfur cluster-binding domain skT53_01740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_01740 PF07730 Histidine kinase skT53_01750 PF00072 Response regulator receiver domain skT53_01750 PF00196 Bacterial regulatory proteins, luxR family skT53_01760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain skT53_01760 PF00384 Molybdopterin oxidoreductase skT53_01760 PF01568 Molydopterin dinucleotide binding domain skT53_01770 PF18267 Rubredoxin NAD+ reductase C-terminal domain skT53_01770 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_01770 PF04324 BFD-like [2Fe-2S] binding domain skT53_01770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain skT53_01770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain skT53_01780 PF00355 Rieske [2Fe-2S] domain skT53_01790 PF00591 Glycosyl transferase family, a/b domain skT53_01790 PF02885 Glycosyl transferase family, helical bundle domain skT53_01800 PF13411 MerR HTH family regulatory protein skT53_01830 PF00528 Binding-protein-dependent transport system inner membrane component skT53_01840 PF00005 ABC transporter skT53_01850 PF00491 Arginase family skT53_01890 PF00005 ABC transporter skT53_01900 PF00547 Urease, gamma subunit skT53_01910 PF00449 Urease alpha-subunit, N-terminal domain skT53_01910 PF01979 Amidohydrolase family skT53_01920 PF01730 UreF skT53_01930 PF02492 CobW/HypB/UreG, nucleotide-binding domain skT53_01940 PF01774 UreD urease accessory protein skT53_01950 PF12697 Alpha/beta hydrolase family skT53_01970 PF00848 Ring hydroxylating alpha subunit (catalytic domain) skT53_01970 PF00355 Rieske [2Fe-2S] domain skT53_01980 PF00848 Ring hydroxylating alpha subunit (catalytic domain) skT53_01980 PF00355 Rieske [2Fe-2S] domain skT53_01990 PF00866 Ring hydroxylating beta subunit skT53_02010 PF07690 Major Facilitator Superfamily skT53_02040 PF00543 Nitrogen regulatory protein P-II skT53_02050 PF07690 Major Facilitator Superfamily skT53_02070 PF00909 Ammonium Transporter Family skT53_02080 PF02308 MgtC family skT53_02110 PF00580 UvrD/REP helicase N-terminal domain skT53_02110 PF13361 UvrD-like helicase C-terminal domain skT53_02130 PF01245 Ribosomal protein L19 skT53_02140 PF10502 Signal peptidase, peptidase S26 skT53_02150 PF01926 50S ribosome-binding GTPase skT53_02160 PF12706 Beta-lactamase superfamily domain skT53_02170 PF01638 HxlR-like helix-turn-helix skT53_02180 PF01351 Ribonuclease HII skT53_02210 PF02021 Uncharacterised protein family UPF0102 skT53_02220 PF03672 Uncharacterised protein family (UPF0154) skT53_02230 PF01497 Periplasmic binding protein skT53_02240 PF01032 FecCD transport family skT53_02250 PF00005 ABC transporter skT53_02270 PF01078 Magnesium chelatase, subunit ChlI skT53_02270 PF13335 Magnesium chelatase, subunit ChlI C-terminal skT53_02300 PF00881 Nitroreductase family skT53_02320 PF00549 CoA-ligase skT53_02320 PF08442 ATP-grasp domain skT53_02330 PF02629 CoA binding domain skT53_02330 PF00549 CoA-ligase skT53_02340 PF02481 DNA recombination-mediator protein A skT53_02350 PF01396 Topoisomerase DNA binding C4 zinc finger skT53_02350 PF01751 Toprim domain skT53_02350 PF01131 DNA topoisomerase skT53_02360 PF01134 Glucose inhibited division protein A skT53_02370 PF02899 Phage integrase, N-terminal SAM-like domain skT53_02370 PF00589 Phage integrase family skT53_02380 PF00227 Proteasome subunit skT53_02390 PF07724 AAA domain (Cdc48 subfamily) skT53_02390 PF10431 C-terminal, D2-small domain, of ClpB protein skT53_02400 PF00460 Flagella basal body rod protein skT53_02410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal skT53_02410 PF00460 Flagella basal body rod protein skT53_02420 PF02049 Flagellar hook-basal body complex protein FliE skT53_02430 PF01514 Secretory protein of YscJ/FliF family skT53_02430 PF08345 Flagellar M-ring protein C-terminal skT53_02440 PF14841 FliG middle domain skT53_02440 PF01706 FliG C-terminal domain skT53_02440 PF14842 FliG N-terminal domain skT53_02460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain skT53_02460 PF02874 ATP synthase alpha/beta family, beta-barrel domain skT53_02460 PF18269 T3SS EscN ATPase C-terminal domain skT53_02500 PF03963 Flagellar hook capping protein - N-terminal region skT53_02520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal skT53_02520 PF00460 Flagella basal body rod protein skT53_02550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term skT53_02550 PF02154 Flagellar motor switch protein FliM skT53_02560 PF04509 CheC-like family skT53_02560 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term skT53_02570 PF00072 Response regulator receiver domain skT53_02590 PF00813 FliP family skT53_02600 PF01313 Bacterial export proteins, family 3 skT53_02610 PF01311 Bacterial export proteins, family 1 skT53_02620 PF01312 FlhB HrpN YscU SpaS Family skT53_02630 PF00771 FHIPEP family skT53_02640 PF00448 SRP54-type protein, GTPase domain skT53_02650 PF10609 NUBPL iron-transfer P-loop NTPase skT53_02660 PF01339 CheB methylesterase skT53_02660 PF00072 Response regulator receiver domain skT53_02670 PF02895 Signal transducing histidine kinase, homodimeric domain skT53_02670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_02670 PF01584 CheW-like domain skT53_02670 PF07194 P2 response regulator binding domain skT53_02670 PF01627 Hpt domain skT53_02680 PF01584 CheW-like domain skT53_02690 PF04509 CheC-like family skT53_02700 PF03975 CheD chemotactic sensory transduction skT53_02720 PF04539 Sigma-70 region 3 skT53_02720 PF04545 Sigma-70, region 4 skT53_02720 PF04542 Sigma-70 region 2 skT53_02770 PF00318 Ribosomal protein S2 skT53_02780 PF00889 Elongation factor TS skT53_02790 PF00696 Amino acid kinase family skT53_02800 PF01765 Ribosome recycling factor skT53_02810 PF01255 Putative undecaprenyl diphosphate synthase skT53_02830 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain skT53_02830 PF13288 DXP reductoisomerase C-terminal domain skT53_02830 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase skT53_02840 PF04073 Aminoacyl-tRNA editing domain skT53_02840 PF03129 Anticodon binding domain skT53_02840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) skT53_02850 PF00535 Glycosyl transferase family 2 skT53_02860 PF02811 PHP domain skT53_02860 PF11490 DNA polymerase III polC-type N-terminus II skT53_02860 PF07733 Bacterial DNA polymerase III alpha NTPase domain skT53_02860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain skT53_02860 PF14579 Helix-hairpin-helix motif skT53_02860 PF00929 Exonuclease skT53_02860 PF14480 DNA polymerase III polC-type N-terminus I skT53_02870 PF17384 RimP C-terminal SH3 domain skT53_02870 PF02576 RimP N-terminal domain skT53_02880 PF00575 S1 RNA binding domain skT53_02880 PF08529 NusA N-terminal domain skT53_02880 PF13184 NusA-like KH domain skT53_02890 PF04296 Protein of unknown function (DUF448) skT53_02900 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family skT53_02910 PF00009 Elongation factor Tu GTP binding domain skT53_02910 PF11987 Translation-initiation factor 2 skT53_02910 PF04760 Translation initiation factor IF-2, N-terminal region skT53_02920 PF02033 Ribosome-binding factor A skT53_02930 PF01368 DHH family skT53_02930 PF02272 DHHA1 domain skT53_02940 PF01509 TruB family pseudouridylate synthase (N terminal domain) skT53_02940 PF16198 tRNA pseudouridylate synthase B C-terminal domain skT53_02950 PF06574 FAD synthetase skT53_02950 PF01687 Riboflavin kinase skT53_02980 PF00312 Ribosomal protein S15 skT53_02990 PF00575 S1 RNA binding domain skT53_02990 PF01138 3' exoribonuclease family, domain 1 skT53_02990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain skT53_02990 PF00013 KH domain skT53_02990 PF03725 3' exoribonuclease family, domain 2 skT53_03000 PF01522 Polysaccharide deacetylase skT53_03010 PF05193 Peptidase M16 inactive domain skT53_03010 PF00675 Insulinase (Peptidase family M16) skT53_03020 PF00692 dUTPase skT53_03040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain skT53_03040 PF16924 Dipicolinate synthase subunit A N-terminal domain skT53_03050 PF02441 Flavoprotein skT53_03060 PF02774 Semialdehyde dehydrogenase, dimerisation domain skT53_03060 PF01118 Semialdehyde dehydrogenase, NAD binding domain skT53_03070 PF00696 Amino acid kinase family skT53_03070 PF13840 ACT domain skT53_03080 PF00701 Dihydrodipicolinate synthetase family skT53_03090 PF17770 Ribonuclease J C-terminal domain skT53_03090 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain skT53_03090 PF00753 Metallo-beta-lactamase superfamily skT53_03130 PF00574 Clp protease skT53_03150 PF17854 FtsK alpha domain skT53_03150 PF09397 Ftsk gamma domain skT53_03150 PF01580 FtsK/SpoIIIE family skT53_03160 PF02308 MgtC family skT53_03190 PF01493 GXGXG motif skT53_03190 PF01645 Conserved region in glutamate synthase skT53_03190 PF00310 Glutamine amidotransferases class-II skT53_03190 PF04898 Glutamate synthase central domain skT53_03200 PF10576 Iron-sulfur binding domain of endonuclease III skT53_03200 PF00633 Helix-hairpin-helix motif skT53_03200 PF00730 HhH-GPD superfamily base excision DNA repair protein skT53_03230 PF00106 short chain dehydrogenase skT53_03250 PF00313 'Cold-shock' DNA-binding domain skT53_03260 PF00905 Penicillin binding protein transpeptidase domain skT53_03260 PF00912 Transglycosylase skT53_03270 PF01227 GTP cyclohydrolase I skT53_03290 PF10263 SprT-like family skT53_03290 PF17283 SprT-like zinc ribbon domain skT53_03320 PF00580 UvrD/REP helicase N-terminal domain skT53_03320 PF13361 UvrD-like helicase C-terminal domain skT53_03330 PF00356 Bacterial regulatory proteins, lacI family skT53_03340 PF05389 Negative regulator of genetic competence (MecA) skT53_03350 PF04284 Protein of unknown function (DUF441) skT53_03360 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) skT53_03370 PF07690 Major Facilitator Superfamily skT53_03380 PF01053 Cys/Met metabolism PLP-dependent enzyme skT53_03390 PF01053 Cys/Met metabolism PLP-dependent enzyme skT53_03400 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase skT53_03400 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain skT53_03410 PF17763 Glutaminase/Asparaginase C-terminal domain skT53_03410 PF00710 Asparaginase, N-terminal skT53_03430 PF07486 Cell Wall Hydrolase skT53_03430 PF01471 Putative peptidoglycan binding domain skT53_03440 PF03413 Peptidase propeptide and YPEB domain skT53_03440 PF14620 YpeB sporulation skT53_03450 PF12945 Flagellar protein YcgR skT53_03450 PF07238 PilZ domain skT53_03470 PF02224 Cytidylate kinase skT53_03490 PF00575 S1 RNA binding domain skT53_03500 PF01070 FMN-dependent dehydrogenase skT53_03520 PF14045 YIEGIA protein skT53_03550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal skT53_03550 PF01926 50S ribosome-binding GTPase skT53_03560 PF02660 Glycerol-3-phosphate acyltransferase skT53_03570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus skT53_03570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus skT53_03580 PF01597 Glycine cleavage H-protein skT53_03590 PF03099 Biotin/lipoate A/B protein ligase family skT53_03600 PF09547 Stage IV sporulation protein A (spore_IV_A) skT53_03620 PF00216 Bacterial DNA-binding protein skT53_03650 PF04012 PspA/IM30 family skT53_03680 PF02081 Tryptophan RNA-binding attenuator protein skT53_03700 PF01209 ubiE/COQ5 methyltransferase family skT53_03710 PF00348 Polyprenyl synthetase skT53_03720 PF00334 Nucleoside diphosphate kinase skT53_03730 PF01739 CheR methyltransferase, SAM binding domain skT53_03730 PF03705 CheR methyltransferase, all-alpha domain skT53_03740 PF00311 Phosphoenolpyruvate carboxylase skT53_03760 PF00849 RNA pseudouridylate synthase skT53_03780 PF05343 M42 glutamyl aminopeptidase skT53_03790 PF05343 M42 glutamyl aminopeptidase skT53_03800 PF05343 M42 glutamyl aminopeptidase skT53_03810 PF01264 Chorismate synthase skT53_03820 PF01761 3-dehydroquinate synthase skT53_03830 PF07736 Chorismate mutase type I skT53_03840 PF00591 Glycosyl transferase family, a/b domain skT53_03840 PF02885 Glycosyl transferase family, helical bundle domain skT53_03850 PF00218 Indole-3-glycerol phosphate synthase skT53_03860 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase skT53_03870 PF00291 Pyridoxal-phosphate dependent enzyme skT53_03880 PF00290 Tryptophan synthase alpha chain skT53_03890 PF01842 ACT domain skT53_03890 PF02153 Prephenate dehydrogenase skT53_03900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) skT53_03920 PF00271 Helicase conserved C-terminal domain skT53_03920 PF04851 Type III restriction enzyme, res subunit skT53_03940 PF08864 UPF0302 domain skT53_03940 PF08858 IDEAL domain skT53_03970 PF00033 Cytochrome b/b6/petB skT53_03980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III skT53_03980 PF00032 Cytochrome b(C-terminal)/b6/petD skT53_03990 PF07187 Protein of unknown function (DUF1405) skT53_04000 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) skT53_04000 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 skT53_04010 PF09335 SNARE associated Golgi protein skT53_04030 PF02673 Bacitracin resistance protein BacA skT53_04040 PF07670 Nucleoside recognition skT53_04050 PF03819 MazG nucleotide pyrophosphohydrolase domain skT53_04060 PF05173 Dihydrodipicolinate reductase, C-terminus skT53_04060 PF01113 Dihydrodipicolinate reductase, N-terminus skT53_04070 PF12627 Probable RNA and SrmB- binding site of polymerase A skT53_04070 PF01743 Poly A polymerase head domain skT53_04070 PF13735 tRNA nucleotidyltransferase domain 2 putative skT53_04080 PF02237 Biotin protein ligase C terminal domain skT53_04080 PF08279 HTH domain skT53_04080 PF03099 Biotin/lipoate A/B protein ligase family skT53_04090 PF02548 Ketopantoate hydroxymethyltransferase skT53_04100 PF02569 Pantoate-beta-alanine ligase skT53_04110 PF02261 Aspartate decarboxylase skT53_04130 PF04851 Type III restriction enzyme, res subunit skT53_04130 PF13307 Helicase C-terminal domain skT53_04130 PF00929 Exonuclease skT53_04140 PF04542 Sigma-70 region 2 skT53_04140 PF08281 Sigma-70, region 4 skT53_04150 PF02629 CoA binding domain skT53_04150 PF06971 Putative DNA-binding protein N-terminus skT53_04160 PF01068 ATP dependent DNA ligase domain skT53_04170 PF01048 Phosphorylase superfamily skT53_04180 PF01008 Initiation factor 2 subunit family skT53_04190 PF00596 Class II Aldolase and Adducin N-terminal domain skT53_04200 PF01979 Amidohydrolase family skT53_04250 PF17862 AAA+ lid domain skT53_04250 PF00004 ATPase family associated with various cellular activities (AAA) skT53_04250 PF01434 Peptidase family M41 skT53_04280 PF08361 MAATS-type transcriptional repressor, C-terminal region skT53_04280 PF00440 Bacterial regulatory proteins, tetR family skT53_04310 PF00108 Thiolase, N-terminal domain skT53_04310 PF02803 Thiolase, C-terminal domain skT53_04330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_04330 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_04330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_04340 PF13452 N-terminal half of MaoC dehydratase skT53_04380 PF13193 AMP-binding enzyme C-terminal domain skT53_04380 PF00501 AMP-binding enzyme skT53_04400 PF02653 Branched-chain amino acid transport system / permease component skT53_04410 PF11862 Domain of unknown function (DUF3382) skT53_04410 PF02653 Branched-chain amino acid transport system / permease component skT53_04420 PF00005 ABC transporter skT53_04420 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_04430 PF00005 ABC transporter skT53_04470 PF07859 alpha/beta hydrolase fold skT53_04490 PF02754 Cysteine-rich domain skT53_04490 PF13183 4Fe-4S dicluster domain skT53_04500 PF00107 Zinc-binding dehydrogenase skT53_04500 PF16884 N-terminal domain of oxidoreductase skT53_04520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family skT53_04530 PF00676 Dehydrogenase E1 component skT53_04540 PF02779 Transketolase, pyrimidine binding domain skT53_04540 PF02780 Transketolase, C-terminal domain skT53_04550 PF00364 Biotin-requiring enzyme skT53_04550 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) skT53_04550 PF02817 e3 binding domain skT53_04560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain skT53_04560 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_04570 PF04463 Protein of unknown function (DUF523) skT53_04620 PF13193 AMP-binding enzyme C-terminal domain skT53_04620 PF00501 AMP-binding enzyme skT53_04630 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain skT53_04630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain skT53_04650 PF03328 HpcH/HpaI aldolase/citrate lyase family skT53_04660 PF01039 Carboxyl transferase domain skT53_04670 PF13458 Periplasmic binding protein skT53_04680 PF02653 Branched-chain amino acid transport system / permease component skT53_04690 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_04690 PF00005 ABC transporter skT53_04700 PF00005 ABC transporter skT53_04720 PF00501 AMP-binding enzyme skT53_04720 PF13193 AMP-binding enzyme C-terminal domain skT53_04750 PF00378 Enoyl-CoA hydratase/isomerase skT53_04760 PF02515 CoA-transferase family III skT53_04770 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_04770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_04770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_04780 PF01261 Xylose isomerase-like TIM barrel skT53_04790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase skT53_04790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase skT53_04800 PF02754 Cysteine-rich domain skT53_04810 PF13183 4Fe-4S dicluster domain skT53_04810 PF11870 Domain of unknown function (DUF3390) skT53_04810 PF02589 LUD domain skT53_04820 PF02589 LUD domain skT53_04830 PF00248 Aldo/keto reductase family skT53_04880 PF00501 AMP-binding enzyme skT53_04880 PF13193 AMP-binding enzyme C-terminal domain skT53_04890 PF02537 CrcB-like protein, Camphor Resistance (CrcB) skT53_04900 PF02537 CrcB-like protein, Camphor Resistance (CrcB) skT53_04910 PF00005 ABC transporter skT53_04910 PF12848 ABC transporter skT53_04920 PF00270 DEAD/DEAH box helicase skT53_04920 PF00271 Helicase conserved C-terminal domain skT53_04930 PF00005 ABC transporter skT53_04930 PF12848 ABC transporter skT53_04950 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain skT53_04950 PF02129 X-Pro dipeptidyl-peptidase (S15 family) skT53_04970 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_04970 PF18158 Adaptive response protein AidB N-terminal domain skT53_04970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_04980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain skT53_04980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain skT53_04990 PF01266 FAD dependent oxidoreductase skT53_04990 PF16901 C-terminal domain of alpha-glycerophosphate oxidase skT53_05000 PF01522 Polysaccharide deacetylase skT53_05020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle skT53_05030 PF00528 Binding-protein-dependent transport system inner membrane component skT53_05040 PF12911 N-terminal TM domain of oligopeptide transport permease C skT53_05040 PF00528 Binding-protein-dependent transport system inner membrane component skT53_05050 PF00005 ABC transporter skT53_05050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region skT53_05060 PF00005 ABC transporter skT53_05060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region skT53_05070 PF13193 AMP-binding enzyme C-terminal domain skT53_05070 PF00501 AMP-binding enzyme skT53_05090 PF00501 AMP-binding enzyme skT53_05090 PF13193 AMP-binding enzyme C-terminal domain skT53_05100 PF00578 AhpC/TSA family skT53_05100 PF10417 C-terminal domain of 1-Cys peroxiredoxin skT53_05140 PF00005 ABC transporter skT53_05140 PF09383 NIL domain skT53_05150 PF00528 Binding-protein-dependent transport system inner membrane component skT53_05160 PF03180 NLPA lipoprotein skT53_05170 PF07690 Major Facilitator Superfamily skT53_05190 PF07486 Cell Wall Hydrolase skT53_05200 PF00171 Aldehyde dehydrogenase family skT53_05210 PF08240 Alcohol dehydrogenase GroES-like domain skT53_05210 PF00107 Zinc-binding dehydrogenase skT53_05220 PF00753 Metallo-beta-lactamase superfamily skT53_05230 PF00158 Sigma-54 interaction domain skT53_05230 PF13426 PAS domain skT53_05230 PF02954 Bacterial regulatory protein, Fis family skT53_05240 PF02954 Bacterial regulatory protein, Fis family skT53_05240 PF13188 PAS domain skT53_05240 PF00158 Sigma-54 interaction domain skT53_05250 PF01425 Amidase skT53_05310 PF01425 Amidase skT53_05330 PF00392 Bacterial regulatory proteins, gntR family skT53_05330 PF00155 Aminotransferase class I and II skT53_05390 PF00005 ABC transporter skT53_05400 PF05861 Bacterial phosphonate metabolism protein (PhnI) skT53_05410 PF06007 Phosphonate metabolism protein PhnJ skT53_05420 PF06007 Phosphonate metabolism protein PhnJ skT53_05430 PF00005 ABC transporter skT53_05450 PF00005 ABC transporter skT53_05470 PF07969 Amidohydrolase family skT53_05480 PF02811 PHP domain skT53_05500 PF04185 Phosphoesterase family skT53_05510 PF02673 Bacitracin resistance protein BacA skT53_05530 PF00701 Dihydrodipicolinate synthetase family skT53_05540 PF01557 Fumarylacetoacetate (FAA) hydrolase family skT53_05550 PF00171 Aldehyde dehydrogenase family skT53_05560 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal skT53_05560 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal skT53_05570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily skT53_05590 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_05590 PF00005 ABC transporter skT53_05600 PF00005 ABC transporter skT53_05610 PF02541 Ppx/GppA phosphatase family skT53_05620 PF02223 Thymidylate kinase skT53_05630 PF02223 Thymidylate kinase skT53_05650 PF13458 Periplasmic binding protein skT53_05660 PF02653 Branched-chain amino acid transport system / permease component skT53_05680 PF11862 Domain of unknown function (DUF3382) skT53_05680 PF02653 Branched-chain amino acid transport system / permease component skT53_05690 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_05690 PF00005 ABC transporter skT53_05700 PF00005 ABC transporter skT53_05710 PF00005 ABC transporter skT53_05720 PF00230 Major intrinsic protein skT53_05730 PF02286 Dehydratase large subunit skT53_05740 PF02288 Dehydratase medium subunit skT53_05750 PF02287 Dehydratase small subunit skT53_05760 PF18427 DD-reactivating factor swiveling domain skT53_05760 PF08841 Diol dehydratase reactivase ATPase-like domain skT53_05780 PF03928 Haem-degrading skT53_05790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_05790 PF06580 Histidine kinase skT53_05790 PF02743 Cache domain skT53_05790 PF00672 HAMP domain skT53_05800 PF00072 Response regulator receiver domain skT53_05810 PF03601 Conserved hypothetical protein 698 skT53_05820 PF03601 Conserved hypothetical protein 698 skT53_05840 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus skT53_05850 PF02615 Malate/L-lactate dehydrogenase skT53_05860 PF00392 Bacterial regulatory proteins, gntR family skT53_05860 PF07729 FCD domain skT53_05870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_05870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_05880 PF07690 Major Facilitator Superfamily skT53_05890 PF12697 Alpha/beta hydrolase family skT53_05900 PF00296 Luciferase-like monooxygenase skT53_05910 PF00296 Luciferase-like monooxygenase skT53_05930 PF00158 Sigma-54 interaction domain skT53_05930 PF02954 Bacterial regulatory protein, Fis family skT53_05930 PF13426 PAS domain skT53_05940 PF00753 Metallo-beta-lactamase superfamily skT53_05950 PF00925 GTP cyclohydrolase II skT53_05950 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase skT53_05960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_05960 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_05960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_05970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_05970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_05980 PF00583 Acetyltransferase (GNAT) family skT53_05980 PF13380 CoA binding domain skT53_05980 PF13607 Succinyl-CoA ligase like flavodoxin domain skT53_05990 PF13607 Succinyl-CoA ligase like flavodoxin domain skT53_05990 PF13380 CoA binding domain skT53_06000 PF00378 Enoyl-CoA hydratase/isomerase skT53_06020 PF13458 Periplasmic binding protein skT53_06030 PF02653 Branched-chain amino acid transport system / permease component skT53_06040 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_06040 PF00005 ABC transporter skT53_06050 PF00005 ABC transporter skT53_06060 PF00465 Iron-containing alcohol dehydrogenase skT53_06070 PF00171 Aldehyde dehydrogenase family skT53_06080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_06080 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_06080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_06090 PF03737 Aldolase/RraA skT53_06100 PF01144 Coenzyme A transferase skT53_06110 PF02910 Fumarate reductase flavoprotein C-term skT53_06110 PF00890 FAD binding domain skT53_06120 PF00378 Enoyl-CoA hydratase/isomerase skT53_06130 PF07729 FCD domain skT53_06130 PF00392 Bacterial regulatory proteins, gntR family skT53_06140 PF01520 N-acetylmuramoyl-L-alanine amidase skT53_06140 PF08239 Bacterial SH3 domain skT53_06150 PF00902 Sec-independent protein translocase protein (TatC) skT53_06160 PF02659 Putative manganese efflux pump skT53_06200 PF03816 Cell envelope-related transcriptional attenuator domain skT53_06210 PF01098 Cell cycle protein skT53_06230 PF07729 FCD domain skT53_06230 PF00392 Bacterial regulatory proteins, gntR family skT53_06240 PF00171 Aldehyde dehydrogenase family skT53_06250 PF00296 Luciferase-like monooxygenase skT53_06260 PF03358 NADPH-dependent FMN reductase skT53_06270 PF01613 Flavin reductase like domain skT53_06290 PF13482 RNase_H superfamily skT53_06300 PF00271 Helicase conserved C-terminal domain skT53_06300 PF09369 Domain of unknown function (DUF1998) skT53_06300 PF00270 DEAD/DEAH box helicase skT53_06310 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) skT53_06310 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 skT53_06330 PF14765 Polyketide synthase dehydratase skT53_06330 PF00550 Phosphopantetheine attachment site skT53_06330 PF08659 KR domain skT53_06330 PF02801 Beta-ketoacyl synthase, C-terminal domain skT53_06330 PF00109 Beta-ketoacyl synthase, N-terminal domain skT53_06330 PF16197 Ketoacyl-synthetase C-terminal extension skT53_06330 PF08240 Alcohol dehydrogenase GroES-like domain skT53_06330 PF00698 Acyl transferase domain skT53_06340 PF01557 Fumarylacetoacetate (FAA) hydrolase family skT53_06350 PF01938 TRAM domain skT53_06350 PF05958 tRNA (Uracil-5-)-methyltransferase skT53_06420 PF02796 Helix-turn-helix domain of resolvase skT53_06420 PF00239 Resolvase, N terminal domain skT53_06430 PF02796 Helix-turn-helix domain of resolvase skT53_06430 PF00665 Integrase core domain skT53_06440 PF01695 IstB-like ATP binding protein skT53_06490 PF03551 Transcriptional regulator PadR-like family skT53_06580 PF00483 Nucleotidyl transferase skT53_06610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I skT53_06610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III skT53_06610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II skT53_06610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain skT53_06620 PF01238 Phosphomannose isomerase type I skT53_06640 PF00480 ROK family skT53_06660 PF01709 Transcriptional regulator skT53_06680 PF01476 LysM domain skT53_06680 PF03734 L,D-transpeptidase catalytic domain skT53_06690 PF03466 LysR substrate binding domain skT53_06690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_06700 PF00890 FAD binding domain skT53_06700 PF14537 Cytochrome c3 skT53_06710 PF07690 Major Facilitator Superfamily skT53_06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_06810 PF07690 Major Facilitator Superfamily skT53_06820 PF00392 Bacterial regulatory proteins, gntR family skT53_06820 PF07729 FCD domain skT53_06840 PF02310 B12 binding domain skT53_06840 PF01642 Methylmalonyl-CoA mutase skT53_06850 PF02310 B12 binding domain skT53_06850 PF01642 Methylmalonyl-CoA mutase skT53_06860 PF00501 AMP-binding enzyme skT53_06860 PF14535 AMP-binding enzyme C-terminal domain skT53_06890 PF03466 LysR substrate binding domain skT53_06890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_06900 PF03601 Conserved hypothetical protein 698 skT53_06910 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain skT53_06910 PF00056 lactate/malate dehydrogenase, NAD binding domain skT53_06920 PF10518 TAT (twin-arginine translocation) pathway signal sequence skT53_06920 PF04261 Dyp-type peroxidase family skT53_06930 PF09375 Imelysin skT53_06940 PF01810 LysE type translocator skT53_06950 PF00216 Bacterial DNA-binding protein skT53_06960 PF00994 Probable molybdopterin binding domain skT53_06970 PF04306 Protein of unknown function (DUF456) skT53_06990 PF01726 LexA DNA binding domain skT53_06990 PF00717 Peptidase S24-like skT53_07000 PF00120 Glutamine synthetase, catalytic domain skT53_07000 PF03951 Glutamine synthetase, beta-Grasp domain skT53_07010 PF00120 Glutamine synthetase, catalytic domain skT53_07010 PF03951 Glutamine synthetase, beta-Grasp domain skT53_07020 PF13411 MerR HTH family regulatory protein skT53_07030 PF03951 Glutamine synthetase, beta-Grasp domain skT53_07030 PF00120 Glutamine synthetase, catalytic domain skT53_07040 PF06838 Methionine gamma-lyase skT53_07050 PF16360 GTP-binding GTPase Middle Region skT53_07050 PF13167 GTP-binding GTPase N-terminal skT53_07050 PF01926 50S ribosome-binding GTPase skT53_07070 PF01926 50S ribosome-binding GTPase skT53_07070 PF09269 Domain of unknown function (DUF1967) skT53_07070 PF01018 GTP1/OBG skT53_07080 PF17866 AAA lid domain skT53_07080 PF00004 ATPase family associated with various cellular activities (AAA) skT53_07100 PF17209 Hfq protein skT53_07120 PF04445 Putative SAM-dependent methyltransferase skT53_07130 PF01119 DNA mismatch repair protein, C-terminal domain skT53_07130 PF08676 MutL C terminal dimerisation domain skT53_07140 PF05192 MutS domain III skT53_07140 PF01624 MutS domain I skT53_07140 PF00488 MutS domain V skT53_07140 PF05190 MutS family domain IV skT53_07150 PF04055 Radical SAM superfamily skT53_07150 PF01938 TRAM domain skT53_07150 PF00919 Uncharacterized protein family UPF0004 skT53_07210 PF14398 YheC/D like ATP-grasp skT53_07240 PF12706 Beta-lactamase superfamily domain skT53_07260 PF01244 Membrane dipeptidase (Peptidase family M19) skT53_07270 PF04232 Stage V sporulation protein S (SpoVS) skT53_07280 PF13277 YmdB-like protein skT53_07300 PF00013 KH domain skT53_07300 PF12072 Domain of unknown function (DUF3552) skT53_07300 PF01966 HD domain skT53_07310 PF02631 RecX family skT53_07320 PF00154 recA bacterial DNA recombination protein skT53_07330 PF00270 DEAD/DEAH box helicase skT53_07330 PF00271 Helicase conserved C-terminal domain skT53_07340 PF02464 Competence-damaged protein skT53_07340 PF18146 Damage-inducible protein CinA KH domain skT53_07340 PF00994 Probable molybdopterin binding domain skT53_07350 PF01066 CDP-alcohol phosphatidyltransferase skT53_07360 PF00919 Uncharacterized protein family UPF0004 skT53_07360 PF18693 TRAM domain skT53_07360 PF04055 Radical SAM superfamily skT53_07370 PF04461 Protein of unknown function (DUF520) skT53_07390 PF11868 Protein of unknown function (DUF3388) skT53_07410 PF13180 PDZ domain skT53_07430 PF01593 Flavin containing amine oxidoreductase skT53_07510 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain skT53_07510 PF00730 HhH-GPD superfamily base excision DNA repair protein skT53_07550 PF02146 Sir2 family skT53_07570 PF13722 5TM C-terminal transporter carbon starvation CstA skT53_07570 PF02554 Carbon starvation protein CstA skT53_07580 PF00753 Metallo-beta-lactamase superfamily skT53_07590 PF05690 Thiazole biosynthesis protein ThiG skT53_07610 PF02581 Thiamine monophosphate synthase skT53_07630 PF13380 CoA binding domain skT53_07650 PF00989 PAS fold skT53_07650 PF00512 His Kinase A (phospho-acceptor) domain skT53_07650 PF18698 Histidine kinase sensor domain skT53_07650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_07650 PF00672 HAMP domain skT53_07660 PF00486 Transcriptional regulatory protein, C terminal skT53_07660 PF00072 Response regulator receiver domain skT53_07670 PF01578 Cytochrome C assembly protein skT53_07680 PF05140 ResB-like family skT53_07690 PF00578 AhpC/TSA family skT53_07700 PF01479 S4 domain skT53_07700 PF00849 RNA pseudouridylate synthase skT53_07710 PF07670 Nucleoside recognition skT53_07720 PF07670 Nucleoside recognition skT53_07730 PF00768 D-alanyl-D-alanine carboxypeptidase skT53_07730 PF07943 Penicillin-binding protein 5, C-terminal domain skT53_07740 PF01425 Amidase skT53_07750 PF00795 Carbon-nitrogen hydrolase skT53_07770 PF00528 Binding-protein-dependent transport system inner membrane component skT53_07780 PF00005 ABC transporter skT53_07800 PF09579 Sporulation protein YtfJ (Spore_YtfJ) skT53_07810 PF11167 Protein of unknown function (DUF2953) skT53_07830 PF04079 Segregation and condensation complex subunit ScpB skT53_07840 PF02616 Segregation and condensation protein ScpA skT53_07850 PF02163 Peptidase family M50 skT53_07870 PF00885 6,7-dimethyl-8-ribityllumazine synthase skT53_07880 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase skT53_07880 PF00925 GTP cyclohydrolase II skT53_07890 PF00677 Lumazine binding domain skT53_07900 PF01872 RibD C-terminal domain skT53_07900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region skT53_07910 PF07943 Penicillin-binding protein 5, C-terminal domain skT53_07910 PF00768 D-alanyl-D-alanine carboxypeptidase skT53_07920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain skT53_07920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain skT53_07930 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_07940 PF14097 Stage V sporulation protein AE1 skT53_07950 PF03862 SpoVAC/SpoVAEB sporulation membrane protein skT53_07960 PF07451 Stage V sporulation protein AD (SpoVAD) skT53_07970 PF03862 SpoVAC/SpoVAEB sporulation membrane protein skT53_07980 PF04545 Sigma-70, region 4 skT53_07980 PF04539 Sigma-70 region 3 skT53_07980 PF04542 Sigma-70 region 2 skT53_07990 PF13581 Histidine kinase-like ATPase domain skT53_08000 PF01740 STAS domain skT53_08010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain skT53_08010 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_08030 PF00768 D-alanyl-D-alanine carboxypeptidase skT53_08030 PF07943 Penicillin-binding protein 5, C-terminal domain skT53_08040 PF01613 Flavin reductase like domain skT53_08050 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain skT53_08050 PF02885 Glycosyl transferase family, helical bundle domain skT53_08050 PF00591 Glycosyl transferase family, a/b domain skT53_08060 PF01048 Phosphorylase superfamily skT53_08070 PF01676 Metalloenzyme superfamily skT53_08090 PF00589 Phage integrase family skT53_08090 PF02899 Phage integrase, N-terminal SAM-like domain skT53_08120 PF05222 Alanine dehydrogenase/PNT, N-terminal domain skT53_08120 PF01262 Alanine dehydrogenase/PNT, C-terminal domain skT53_08130 PF01475 Ferric uptake regulator family skT53_08140 PF01944 Stage II sporulation protein M skT53_08170 PF00266 Aminotransferase class-V skT53_08190 PF00293 NUDIX domain skT53_08210 PF01546 Peptidase family M20/M25/M40 skT53_08210 PF07687 Peptidase dimerisation domain skT53_08250 PF07687 Peptidase dimerisation domain skT53_08250 PF01546 Peptidase family M20/M25/M40 skT53_08260 PF01039 Carboxyl transferase domain skT53_08280 PF01642 Methylmalonyl-CoA mutase skT53_08280 PF02310 B12 binding domain skT53_08290 PF01642 Methylmalonyl-CoA mutase skT53_08290 PF02310 B12 binding domain skT53_08330 PF00005 ABC transporter skT53_08360 PF08281 Sigma-70, region 4 skT53_08360 PF04542 Sigma-70 region 2 skT53_08390 PF03099 Biotin/lipoate A/B protein ligase family skT53_08400 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family skT53_08400 PF04055 Radical SAM superfamily skT53_08430 PF00535 Glycosyl transferase family 2 skT53_08470 PF01967 MoaC family skT53_08480 PF04055 Radical SAM superfamily skT53_08480 PF06463 Molybdenum Cofactor Synthesis C skT53_08490 PF02391 MoaE protein skT53_08500 PF00899 ThiF family skT53_08510 PF02743 Cache domain skT53_08510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_08510 PF00672 HAMP domain skT53_08520 PF03845 Spore germination protein skT53_08540 PF05504 Spore germination B3/ GerAC like, C-terminal skT53_08550 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_08560 PF00892 EamA-like transporter family skT53_08580 PF07690 Major Facilitator Superfamily skT53_08590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_08590 PF01842 ACT domain skT53_08590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_08620 PF08241 Methyltransferase domain skT53_08650 PF01272 Transcription elongation factor, GreA/GreB, C-term skT53_08650 PF03449 Transcription elongation factor, N-terminal skT53_08670 PF17866 AAA lid domain skT53_08670 PF00004 ATPase family associated with various cellular activities (AAA) skT53_08730 PF09335 SNARE associated Golgi protein skT53_08740 PF01522 Polysaccharide deacetylase skT53_08740 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain skT53_08750 PF00266 Aminotransferase class-V skT53_08770 PF03239 Iron permease FTR1 family skT53_08790 PF00565 Staphylococcal nuclease homologue skT53_08860 PF01544 CorA-like Mg2+ transporter protein skT53_08870 PF08769 Sporulation initiation factor Spo0A C terminal skT53_08870 PF00072 Response regulator receiver domain skT53_08880 PF05580 SpoIVB peptidase S55 skT53_08880 PF17820 PDZ domain skT53_08890 PF13476 AAA domain skT53_08900 PF01316 Arginine repressor, DNA binding domain skT53_08900 PF02863 Arginine repressor, C-terminal domain skT53_08910 PF01513 ATP-NAD kinase skT53_08920 PF01728 FtsJ-like methyltransferase skT53_08920 PF01479 S4 domain skT53_08930 PF02779 Transketolase, pyrimidine binding domain skT53_08930 PF02780 Transketolase, C-terminal domain skT53_08930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase skT53_08950 PF04239 Protein of unknown function (DUF421) skT53_08960 PF00348 Polyprenyl synthetase skT53_08970 PF02609 Exonuclease VII small subunit skT53_08980 PF13742 OB-fold nucleic acid binding domain skT53_08980 PF02601 Exonuclease VII, large subunit skT53_08990 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain skT53_08990 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain skT53_09000 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_09010 PF00814 Glycoprotease family skT53_09020 PF01029 NusB family skT53_09050 PF03780 Asp23 family, cell envelope-related function skT53_09060 PF00289 Biotin carboxylase, N-terminal domain skT53_09060 PF02785 Biotin carboxylase C-terminal domain skT53_09060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain skT53_09070 PF00364 Biotin-requiring enzyme skT53_09080 PF12685 SpoIIIAH-like protein skT53_09100 PF09581 Stage III sporulation protein AF (Spore_III_AF) skT53_09110 PF09546 Stage III sporulation protein AE (spore_III_AE) skT53_09120 PF06686 Stage III sporulation protein AC/AD protein family skT53_09180 PF08207 Elongation factor P (EF-P) KOW-like domain skT53_09180 PF09285 Elongation factor P, C-terminal skT53_09180 PF01132 Elongation factor P (EF-P) OB domain skT53_09190 PF01321 Creatinase/Prolidase N-terminal domain skT53_09190 PF00557 Metallopeptidase family M24 skT53_09200 PF01220 Dehydroquinase class II skT53_09210 PF00300 Histidine phosphatase superfamily (branch 1) skT53_09250 PF02347 Glycine cleavage system P-protein skT53_09260 PF02347 Glycine cleavage system P-protein skT53_09270 PF01571 Aminomethyltransferase folate-binding domain skT53_09270 PF08669 Glycine cleavage T-protein C-terminal barrel domain skT53_09280 PF00176 SNF2 family N-terminal domain skT53_09280 PF00271 Helicase conserved C-terminal domain skT53_09320 PF00288 GHMP kinases N terminal domain skT53_09320 PF08544 GHMP kinases C terminal skT53_09330 PF00291 Pyridoxal-phosphate dependent enzyme skT53_09370 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain skT53_09370 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain skT53_09390 PF04072 Leucine carboxyl methyltransferase skT53_09400 PF04397 LytTr DNA-binding domain skT53_09400 PF00072 Response regulator receiver domain skT53_09410 PF07687 Peptidase dimerisation domain skT53_09410 PF01546 Peptidase family M20/M25/M40 skT53_09430 PF07690 Major Facilitator Superfamily skT53_09440 PF00501 AMP-binding enzyme skT53_09440 PF13193 AMP-binding enzyme C-terminal domain skT53_09450 PF00440 Bacterial regulatory proteins, tetR family skT53_09470 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal skT53_09470 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal skT53_09490 PF03069 Acetamidase/Formamidase family skT53_09500 PF00795 Carbon-nitrogen hydrolase skT53_09530 PF13537 Glutamine amidotransferase domain skT53_09530 PF00733 Asparagine synthase skT53_09540 PF01202 Shikimate kinase skT53_09560 PF03466 LysR substrate binding domain skT53_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_09580 PF01797 Transposase IS200 like skT53_09590 PF02627 Carboxymuconolactone decarboxylase family skT53_09600 PF00171 Aldehyde dehydrogenase family skT53_09620 PF08386 TAP-like protein skT53_09620 PF00561 alpha/beta hydrolase fold skT53_09650 PF07690 Major Facilitator Superfamily skT53_09660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase skT53_09660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase skT53_09670 PF07729 FCD domain skT53_09670 PF00392 Bacterial regulatory proteins, gntR family skT53_09680 PF17890 Peptidoglycan hydrolase LytB WW-like domain skT53_09680 PF01473 Putative cell wall binding repeat skT53_09680 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase skT53_09680 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain skT53_09690 PF00990 Diguanylate cyclase, GGDEF domain skT53_09690 PF00563 EAL domain skT53_09690 PF00498 FHA domain skT53_09710 PF14398 YheC/D like ATP-grasp skT53_09720 PF00557 Metallopeptidase family M24 skT53_09730 PF07690 Major Facilitator Superfamily skT53_09740 PF03773 Predicted permease skT53_09750 PF00950 ABC 3 transport family skT53_09760 PF00005 ABC transporter skT53_09770 PF01297 Zinc-uptake complex component A periplasmic skT53_09780 PF01475 Ferric uptake regulator family skT53_09800 PF02322 Cytochrome bd terminal oxidase subunit II skT53_09850 PF07963 Prokaryotic N-terminal methylation motif skT53_09860 PF00482 Type II secretion system (T2SS), protein F skT53_09870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain skT53_09870 PF00437 Type II/IV secretion system protein skT53_09880 PF01925 Sulfite exporter TauE/SafE skT53_09890 PF14464 Prokaryotic homologs of the JAB domain skT53_09900 PF01018 GTP1/OBG skT53_09900 PF01926 50S ribosome-binding GTPase skT53_09900 PF09269 Domain of unknown function (DUF1967) skT53_09940 PF00378 Enoyl-CoA hydratase/isomerase skT53_09950 PF02515 CoA-transferase family III skT53_09960 PF03552 Cellulose synthase skT53_09960 PF07238 PilZ domain skT53_09960 PF00535 Glycosyl transferase family 2 skT53_09980 PF00563 EAL domain skT53_09980 PF00990 Diguanylate cyclase, GGDEF domain skT53_09980 PF03707 Bacterial signalling protein N terminal repeat skT53_09990 PF00486 Transcriptional regulatory protein, C terminal skT53_09990 PF00072 Response regulator receiver domain skT53_10000 PF00672 HAMP domain skT53_10000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_10000 PF00512 His Kinase A (phospho-acceptor) domain skT53_10000 PF13426 PAS domain skT53_10010 PF11871 Domain of unknown function (DUF3391) skT53_10010 PF01966 HD domain skT53_10040 PF02667 Short chain fatty acid transporter skT53_10050 PF00005 ABC transporter skT53_10060 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_10060 PF00005 ABC transporter skT53_10070 PF02653 Branched-chain amino acid transport system / permease component skT53_10070 PF11862 Domain of unknown function (DUF3382) skT53_10100 PF01016 Ribosomal L27 protein skT53_10120 PF00829 Ribosomal prokaryotic L21 protein skT53_10140 PF02424 ApbE family skT53_10170 PF00230 Major intrinsic protein skT53_10180 PF08240 Alcohol dehydrogenase GroES-like domain skT53_10180 PF00107 Zinc-binding dehydrogenase skT53_10190 PF13426 PAS domain skT53_10190 PF00158 Sigma-54 interaction domain skT53_10190 PF02954 Bacterial regulatory protein, Fis family skT53_10200 PF00156 Phosphoribosyl transferase domain skT53_10210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family skT53_10220 PF01180 Dihydroorotate dehydrogenase skT53_10230 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B skT53_10230 PF00175 Oxidoreductase NAD-binding domain skT53_10240 PF02142 MGS-like domain skT53_10240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain skT53_10240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain skT53_10250 PF00117 Glutamine amidotransferase class-I skT53_10250 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain skT53_10260 PF01979 Amidohydrolase family skT53_10270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain skT53_10270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain skT53_10280 PF00860 Permease family skT53_10290 PF00156 Phosphoribosyl transferase domain skT53_10300 PF00849 RNA pseudouridylate synthase skT53_10300 PF01479 S4 domain skT53_10310 PF01252 Signal peptidase (SPase) II skT53_10320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III skT53_10320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I skT53_10320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II skT53_10320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain skT53_10330 PF07853 Protein of unknown function (DUF1648) skT53_10330 PF13630 SdpI/YhfL protein family skT53_10340 PF01022 Bacterial regulatory protein, arsR family skT53_10350 PF01258 Prokaryotic dksA/traR C4-type zinc finger skT53_10390 PF08264 Anticodon-binding domain of tRNA skT53_10390 PF00133 tRNA synthetases class I (I, L, M and V) skT53_10390 PF06827 Zinc finger found in FPG and IleRS skT53_10400 PF05103 DivIVA protein skT53_10410 PF01479 S4 domain skT53_10410 PF17774 Putative RNA-binding domain in YlmH skT53_10430 PF04472 Cell division protein SepF skT53_10440 PF01168 Alanine racemase, N-terminal domain skT53_10450 PF02578 Multi-copper polyphenol oxidoreductase laccase skT53_10460 PF05239 PRC-barrel domain skT53_10470 PF04542 Sigma-70 region 2 skT53_10470 PF04545 Sigma-70, region 4 skT53_10470 PF04539 Sigma-70 region 3 skT53_10480 PF04542 Sigma-70 region 2 skT53_10480 PF04545 Sigma-70, region 4 skT53_10490 PF03419 Sporulation factor SpoIIGA skT53_10500 PF12327 FtsZ family, C-terminal domain skT53_10500 PF00091 Tubulin/FtsZ family, GTPase domain skT53_10510 PF02491 SHS2 domain inserted in FTSA skT53_10520 PF06947 Protein of unknown function (DUF1290) skT53_10540 PF05949 Bacterial protein of unknown function (DUF881) skT53_10550 PF08478 POTRA domain, FtsQ-type skT53_10560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) skT53_10570 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain skT53_10570 PF01565 FAD binding domain skT53_10580 PF03033 Glycosyltransferase family 28 N-terminal domain skT53_10580 PF04101 Glycosyltransferase family 28 C-terminal domain skT53_10590 PF01098 Cell cycle protein skT53_10600 PF08245 Mur ligase middle domain skT53_10600 PF02875 Mur ligase family, glutamate ligase domain skT53_10610 PF00953 Glycosyl transferase family 4 skT53_10620 PF08245 Mur ligase middle domain skT53_10620 PF01225 Mur ligase family, catalytic domain skT53_10620 PF02875 Mur ligase family, glutamate ligase domain skT53_10630 PF08245 Mur ligase middle domain skT53_10630 PF01225 Mur ligase family, catalytic domain skT53_10630 PF02875 Mur ligase family, glutamate ligase domain skT53_10640 PF03717 Penicillin-binding Protein dimerisation domain skT53_10640 PF00905 Penicillin binding protein transpeptidase domain skT53_10640 PF03793 PASTA domain skT53_10650 PF03717 Penicillin-binding Protein dimerisation domain skT53_10650 PF00905 Penicillin binding protein transpeptidase domain skT53_10650 PF03793 PASTA domain skT53_10670 PF01795 MraW methylase family skT53_10680 PF02381 MraZ protein, putative antitoxin-like skT53_10720 PF08546 Ketopantoate reductase PanE/ApbA C terminal skT53_10720 PF02558 Ketopantoate reductase PanE/ApbA skT53_10740 PF00579 tRNA synthetases class I (W and Y) skT53_10750 PF00579 tRNA synthetases class I (W and Y) skT53_10780 PF03741 Integral membrane protein TerC family skT53_10790 PF01478 Type IV leader peptidase family skT53_10790 PF06750 Bacterial Peptidase A24 N-terminal domain skT53_10800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_10810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain skT53_10810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_10820 PF01903 CbiX skT53_10830 PF07685 CobB/CobQ-like glutamine amidotransferase domain skT53_10830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain skT53_10840 PF01890 Cobalamin synthesis G C-terminus skT53_10840 PF11761 Cobalamin biosynthesis central region skT53_10840 PF11760 Cobalamin synthesis G N-terminal skT53_10850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_10860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_10870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_10880 PF01888 CbiD skT53_10890 PF02570 Precorrin-8X methylmutase skT53_10900 PF02571 Precorrin-6x reductase CbiJ/CobK skT53_10910 PF01923 Cobalamin adenosyltransferase skT53_10920 PF00881 Nitroreductase family skT53_10950 PF00364 Biotin-requiring enzyme skT53_10960 PF00501 AMP-binding enzyme skT53_10960 PF13193 AMP-binding enzyme C-terminal domain skT53_10970 PF00474 Sodium:solute symporter family skT53_10990 PF01575 MaoC like domain skT53_11000 PF00501 AMP-binding enzyme skT53_11000 PF13193 AMP-binding enzyme C-terminal domain skT53_11020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_11020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_11020 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_11030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_11030 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_11030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_11060 PF00378 Enoyl-CoA hydratase/isomerase skT53_11070 PF00158 Sigma-54 interaction domain skT53_11070 PF00989 PAS fold skT53_11070 PF02954 Bacterial regulatory protein, Fis family skT53_11090 PF00753 Metallo-beta-lactamase superfamily skT53_11110 PF00465 Iron-containing alcohol dehydrogenase skT53_11120 PF00132 Bacterial transferase hexapeptide (six repeats) skT53_11130 PF00501 AMP-binding enzyme skT53_11130 PF13193 AMP-binding enzyme C-terminal domain skT53_11140 PF02515 CoA-transferase family III skT53_11170 PF13452 N-terminal half of MaoC dehydratase skT53_11180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_11180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_11180 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_11190 PF13193 AMP-binding enzyme C-terminal domain skT53_11190 PF00501 AMP-binding enzyme skT53_11200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_11200 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_11200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_11210 PF02803 Thiolase, C-terminal domain skT53_11210 PF00108 Thiolase, N-terminal domain skT53_11230 PF00501 AMP-binding enzyme skT53_11230 PF13193 AMP-binding enzyme C-terminal domain skT53_11240 PF00501 AMP-binding enzyme skT53_11240 PF13193 AMP-binding enzyme C-terminal domain skT53_11260 PF01039 Carboxyl transferase domain skT53_11270 PF00378 Enoyl-CoA hydratase/isomerase skT53_11280 PF00364 Biotin-requiring enzyme skT53_11290 PF00289 Biotin carboxylase, N-terminal domain skT53_11290 PF02785 Biotin carboxylase C-terminal domain skT53_11290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain skT53_11300 PF00528 Binding-protein-dependent transport system inner membrane component skT53_11310 PF00528 Binding-protein-dependent transport system inner membrane component skT53_11320 PF00005 ABC transporter skT53_11350 PF00694 Aconitase C-terminal domain skT53_11360 PF00330 Aconitase family (aconitate hydratase) skT53_11370 PF13426 PAS domain skT53_11370 PF02954 Bacterial regulatory protein, Fis family skT53_11370 PF00158 Sigma-54 interaction domain skT53_11380 PF08664 YcbB domain skT53_11380 PF00072 Response regulator receiver domain skT53_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_11400 PF00528 Binding-protein-dependent transport system inner membrane component skT53_11410 PF00528 Binding-protein-dependent transport system inner membrane component skT53_11420 PF00497 Bacterial extracellular solute-binding proteins, family 3 skT53_11430 PF00005 ABC transporter skT53_11450 PF02634 FdhD/NarQ family skT53_11490 PF00384 Molybdopterin oxidoreductase skT53_11490 PF01568 Molydopterin dinucleotide binding domain skT53_11490 PF12838 4Fe-4S dicluster domain skT53_11490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region skT53_11490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain skT53_11500 PF01226 Formate/nitrite transporter skT53_11530 PF05199 GMC oxidoreductase skT53_11530 PF00732 GMC oxidoreductase skT53_11540 PF14492 Elongation Factor G, domain II skT53_11540 PF00009 Elongation factor Tu GTP binding domain skT53_11540 PF03144 Elongation factor Tu domain 2 skT53_11540 PF00679 Elongation factor G C-terminus skT53_11550 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 skT53_11560 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) skT53_11600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain skT53_11600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain skT53_11620 PF00574 Clp protease skT53_11690 PF06949 Protein of unknown function (DUF1292) skT53_11700 PF00892 EamA-like transporter family skT53_11720 PF01544 CorA-like Mg2+ transporter protein skT53_11730 PF00155 Aminotransferase class I and II skT53_11750 PF07685 CobB/CobQ-like glutamine amidotransferase domain skT53_11760 PF08245 Mur ligase middle domain skT53_11760 PF08353 Domain of unknown function (DUF1727) skT53_11770 PF03816 Cell envelope-related transcriptional attenuator domain skT53_11780 PF03734 L,D-transpeptidase catalytic domain skT53_11780 PF01476 LysM domain skT53_11790 PF04715 Anthranilate synthase component I, N terminal region skT53_11790 PF00425 chorismate binding enzyme skT53_11800 PF00117 Glutamine amidotransferase class-I skT53_11830 PF18125 RlmM ferredoxin-like domain skT53_11830 PF01728 FtsJ-like methyltransferase skT53_11860 PF01784 NIF3 (NGG1p interacting factor 3) skT53_11870 PF04816 tRNA (adenine(22)-N(1))-methyltransferase skT53_11880 PF00501 AMP-binding enzyme skT53_11880 PF13193 AMP-binding enzyme C-terminal domain skT53_11900 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_11900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_11900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_11910 PF00140 Sigma-70 factor, region 1.2 skT53_11910 PF04542 Sigma-70 region 2 skT53_11910 PF04539 Sigma-70 region 3 skT53_11910 PF04545 Sigma-70, region 4 skT53_11910 PF03979 Sigma-70 factor, region 1.1 skT53_11920 PF01807 CHC2 zinc finger skT53_11920 PF08275 DNA primase catalytic core, N-terminal domain skT53_11920 PF10410 DnaB-helicase binding domain of primase skT53_11930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain skT53_11930 PF02896 PEP-utilising enzyme, TIM barrel domain skT53_11930 PF00391 PEP-utilising enzyme, mobile domain skT53_11940 PF03618 Kinase/pyrophosphorylase skT53_11950 PF00571 CBS domain skT53_11950 PF08279 HTH domain skT53_11960 PF00083 Sugar (and other) transporter skT53_11970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) skT53_11970 PF03129 Anticodon binding domain skT53_11980 PF01040 UbiA prenyltransferase family skT53_11990 PF02565 Recombination protein O C terminal skT53_11990 PF11967 Recombination protein O N terminal skT53_12010 PF07650 KH domain skT53_12010 PF01926 50S ribosome-binding GTPase skT53_12020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region skT53_12030 PF01219 Prokaryotic diacylglycerol kinase skT53_12040 PF02130 Uncharacterized protein family UPF0054 skT53_12050 PF01966 HD domain skT53_12050 PF07698 7TM receptor with intracellular HD hydrolase skT53_12050 PF07697 7TM-HD extracellular skT53_12060 PF02562 PhoH-like protein skT53_12080 PF07873 YabP family skT53_12100 PF12127 SigmaW regulon antibacterial skT53_12110 PF01957 NfeD-like C-terminal, partner-binding skT53_12110 PF01972 Serine dehydrogenase proteinase skT53_12120 PF09424 Yqey-like protein skT53_12130 PF01165 Ribosomal protein S21 skT53_12160 PF17785 PUA-like domain skT53_12160 PF10672 S-adenosylmethionine-dependent methyltransferase skT53_12170 PF02690 Na+/Pi-cotransporter skT53_12180 PF03746 LamB/YcsF family skT53_12190 PF02626 Carboxyltransferase domain, subdomain A and B skT53_12200 PF02682 Carboxyltransferase domain, subdomain C and D skT53_12210 PF01791 DeoC/LacD family aldolase skT53_12220 PF00293 NUDIX domain skT53_12230 PF00881 Nitroreductase family skT53_12240 PF04055 Radical SAM superfamily skT53_12240 PF01938 TRAM domain skT53_12240 PF00919 Uncharacterized protein family UPF0004 skT53_12250 PF04452 RNA methyltransferase skT53_12270 PF00188 Cysteine-rich secretory protein family skT53_12280 PF07690 Major Facilitator Superfamily skT53_12280 PF00083 Sugar (and other) transporter skT53_12310 PF00501 AMP-binding enzyme skT53_12310 PF13193 AMP-binding enzyme C-terminal domain skT53_12320 PF00440 Bacterial regulatory proteins, tetR family skT53_12350 PF00528 Binding-protein-dependent transport system inner membrane component skT53_12380 PF02625 XdhC and CoxI family skT53_12380 PF13478 XdhC Rossmann domain skT53_12390 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase skT53_12390 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain skT53_12400 PF00857 Isochorismatase family skT53_12410 PF07690 Major Facilitator Superfamily skT53_12420 PF00107 Zinc-binding dehydrogenase skT53_12420 PF08240 Alcohol dehydrogenase GroES-like domain skT53_12430 PF00355 Rieske [2Fe-2S] domain skT53_12440 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain skT53_12440 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain skT53_12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_12450 PF03466 LysR substrate binding domain skT53_12460 PF01969 Protein of unknown function DUF111 skT53_12480 PF00731 AIR carboxylase skT53_12490 PF02540 NAD synthase skT53_12500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_12500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_12510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA skT53_12520 PF00465 Iron-containing alcohol dehydrogenase skT53_12540 PF17042 Nucleotide-binding C-terminal domain skT53_12540 PF07005 Sugar-binding N-terminal domain skT53_12550 PF02954 Bacterial regulatory protein, Fis family skT53_12550 PF00989 PAS fold skT53_12550 PF00158 Sigma-54 interaction domain skT53_12560 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) skT53_12560 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 skT53_12570 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain skT53_12570 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain skT53_12590 PF00465 Iron-containing alcohol dehydrogenase skT53_12600 PF00171 Aldehyde dehydrogenase family skT53_12610 PF00005 ABC transporter skT53_12620 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_12620 PF00005 ABC transporter skT53_12630 PF11862 Domain of unknown function (DUF3382) skT53_12630 PF02653 Branched-chain amino acid transport system / permease component skT53_12640 PF02653 Branched-chain amino acid transport system / permease component skT53_12650 PF13458 Periplasmic binding protein skT53_12660 PF00356 Bacterial regulatory proteins, lacI family skT53_12700 PF01370 NAD dependent epimerase/dehydratase family skT53_12700 PF08338 Domain of unknown function (DUF1731) skT53_12750 PF03717 Penicillin-binding Protein dimerisation domain skT53_12750 PF00905 Penicillin binding protein transpeptidase domain skT53_12760 PF01596 O-methyltransferase skT53_12770 PF02618 YceG-like family skT53_12790 PF03652 Holliday junction resolvase skT53_12800 PF06135 IreB regulatory phosphoprotein skT53_12810 PF01594 AI-2E family transporter skT53_12870 PF00266 Aminotransferase class-V skT53_12880 PF02082 Transcriptional regulator skT53_12900 PF12002 MgsA AAA+ ATPase C terminal skT53_12900 PF16193 AAA C-terminal domain skT53_12900 PF00004 ATPase family associated with various cellular activities (AAA) skT53_12910 PF01212 Beta-eliminating lyase skT53_12920 PF00425 chorismate binding enzyme skT53_12930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_12930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_12930 PF16582 Middle domain of thiamine pyrophosphate skT53_12940 PF00561 alpha/beta hydrolase fold skT53_12950 PF00378 Enoyl-CoA hydratase/isomerase skT53_12960 PF13193 AMP-binding enzyme C-terminal domain skT53_12960 PF00501 AMP-binding enzyme skT53_12970 PF16177 Acetyl-coenzyme A synthetase N-terminus skT53_12970 PF13193 AMP-binding enzyme C-terminal domain skT53_12970 PF00501 AMP-binding enzyme skT53_13000 PF00989 PAS fold skT53_13000 PF02954 Bacterial regulatory protein, Fis family skT53_13000 PF00158 Sigma-54 interaction domain skT53_13010 PF13378 Enolase C-terminal domain-like skT53_13010 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain skT53_13070 PF00111 2Fe-2S iron-sulfur cluster binding domain skT53_13070 PF01799 [2Fe-2S] binding domain skT53_13090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase skT53_13090 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain skT53_13100 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase skT53_13100 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain skT53_13130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily skT53_13140 PF02938 GAD domain skT53_13140 PF00152 tRNA synthetases class II (D, K and N) skT53_13140 PF01336 OB-fold nucleic acid binding domain skT53_13150 PF13393 Histidyl-tRNA synthetase skT53_13150 PF03129 Anticodon binding domain skT53_13170 PF01451 Low molecular weight phosphotyrosine protein phosphatase skT53_13180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily skT53_13200 PF01758 Sodium Bile acid symporter family skT53_13210 PF01022 Bacterial regulatory protein, arsR family skT53_13220 PF13193 AMP-binding enzyme C-terminal domain skT53_13220 PF00501 AMP-binding enzyme skT53_13230 PF00266 Aminotransferase class-V skT53_13240 PF02910 Fumarate reductase flavoprotein C-term skT53_13240 PF00890 FAD binding domain skT53_13250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain skT53_13250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain skT53_13260 PF02445 Quinolinate synthetase A protein skT53_13270 PF08279 HTH domain skT53_13270 PF02829 3H domain skT53_13290 PF00392 Bacterial regulatory proteins, gntR family skT53_13290 PF00155 Aminotransferase class I and II skT53_13320 PF00501 AMP-binding enzyme skT53_13370 PF08240 Alcohol dehydrogenase GroES-like domain skT53_13370 PF00107 Zinc-binding dehydrogenase skT53_13380 PF02126 Phosphotriesterase family skT53_13390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_13390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_13390 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_13400 PF00501 AMP-binding enzyme skT53_13400 PF13193 AMP-binding enzyme C-terminal domain skT53_13430 PF04055 Radical SAM superfamily skT53_13450 PF00586 AIR synthase related protein, N-terminal domain skT53_13450 PF02769 AIR synthase related protein, C-terminal domain skT53_13460 PF03841 L-seryl-tRNA selenium transferase skT53_13460 PF12390 Selenocysteine synthase N terminal skT53_13470 PF01566 Natural resistance-associated macrophage protein skT53_13500 PF00202 Aminotransferase class-III skT53_13560 PF12727 PBP superfamily domain skT53_13560 PF12728 Helix-turn-helix domain skT53_13570 PF00994 Probable molybdopterin binding domain skT53_13570 PF03454 MoeA C-terminal region (domain IV) skT53_13570 PF03453 MoeA N-terminal region (domain I and II) skT53_13580 PF12804 MobA-like NTP transferase domain skT53_13600 PF03916 Polysulphide reductase, NrfD skT53_13610 PF13247 4Fe-4S dicluster domain skT53_13610 PF12800 4Fe-4S binding domain skT53_13610 PF09163 Formate dehydrogenase N, transmembrane skT53_13630 PF02634 FdhD/NarQ family skT53_13650 PF02416 mttA/Hcf106 family skT53_13660 PF01261 Xylose isomerase-like TIM barrel skT53_13670 PF00085 Thioredoxin skT53_13680 PF01106 NifU-like domain skT53_13690 PF01694 Rhomboid family skT53_13700 PF13426 PAS domain skT53_13700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_13700 PF00512 His Kinase A (phospho-acceptor) domain skT53_13700 PF00989 PAS fold skT53_13700 PF13188 PAS domain skT53_13710 PF00989 PAS fold skT53_13710 PF00512 His Kinase A (phospho-acceptor) domain skT53_13710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_13710 PF13426 PAS domain skT53_13710 PF13188 PAS domain skT53_13720 PF03480 Bacterial extracellular solute-binding protein, family 7 skT53_13730 PF03328 HpcH/HpaI aldolase/citrate lyase family skT53_13750 PF05681 Fumarate hydratase (Fumerase) skT53_13770 PF03061 Thioesterase superfamily skT53_13780 PF02910 Fumarate reductase flavoprotein C-term skT53_13780 PF00890 FAD binding domain skT53_13800 PF00392 Bacterial regulatory proteins, gntR family skT53_13800 PF07729 FCD domain skT53_13810 PF03480 Bacterial extracellular solute-binding protein, family 7 skT53_13840 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase skT53_13840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase skT53_13850 PF02627 Carboxymuconolactone decarboxylase family skT53_13860 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component skT53_13880 PF03480 Bacterial extracellular solute-binding protein, family 7 skT53_13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_13890 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain skT53_13890 PF17203 Single cache domain 3 skT53_13900 PF00072 Response regulator receiver domain skT53_13910 PF00375 Sodium:dicarboxylate symporter family skT53_13930 PF00578 AhpC/TSA family skT53_13940 PF00578 AhpC/TSA family skT53_13950 PF00999 Sodium/hydrogen exchanger family skT53_13970 PF01479 S4 domain skT53_13970 PF00849 RNA pseudouridylate synthase skT53_13990 PF00535 Glycosyl transferase family 2 skT53_14010 PF00892 EamA-like transporter family skT53_14020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_14020 PF12729 Four helix bundle sensory module for signal transduction skT53_14020 PF00672 HAMP domain skT53_14030 PF13537 Glutamine amidotransferase domain skT53_14030 PF00733 Asparagine synthase skT53_14050 PF02899 Phage integrase, N-terminal SAM-like domain skT53_14050 PF00589 Phage integrase family skT53_14060 PF06725 3D domain skT53_14070 PF01934 Protein of unknown function DUF86 skT53_14080 PF02581 Thiamine monophosphate synthase skT53_14090 PF01266 FAD dependent oxidoreductase skT53_14100 PF03009 Glycerophosphoryl diester phosphodiesterase family skT53_14110 PF00392 Bacterial regulatory proteins, gntR family skT53_14120 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II skT53_14120 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase skT53_14120 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg skT53_14130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_14140 PF00293 NUDIX domain skT53_14150 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_14160 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) skT53_14250 PF05105 Bacteriophage holin family skT53_14470 PF03354 Phage Terminase skT53_14530 PF00717 Peptidase S24-like skT53_14530 PF01726 LexA DNA binding domain skT53_14580 PF08281 Sigma-70, region 4 skT53_14580 PF04542 Sigma-70 region 2 skT53_14610 PF02874 ATP synthase alpha/beta family, beta-barrel domain skT53_14610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain skT53_14640 PF07261 Replication initiation and membrane attachment skT53_14640 PF14297 Domain of unknown function (DUF4373) skT53_14660 PF00145 C-5 cytosine-specific DNA methylase skT53_14750 PF03837 RecT family skT53_14760 PF09588 YqaJ-like viral recombinase domain skT53_14850 PF02498 BRO family, N-terminal domain skT53_14850 PF10548 P22AR C-terminal domain skT53_14920 PF01381 Helix-turn-helix skT53_14940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain skT53_14940 PF07733 Bacterial DNA polymerase III alpha NTPase domain skT53_14940 PF02811 PHP domain skT53_14940 PF14579 Helix-hairpin-helix motif skT53_14940 PF00929 Exonuclease skT53_14950 PF14659 Phage integrase, N-terminal SAM-like domain skT53_14950 PF00589 Phage integrase family skT53_15000 PF02681 Divergent PAP2 family skT53_15010 PF05343 M42 glutamyl aminopeptidase skT53_15030 PF08827 Domain of unknown function (DUF1805) skT53_15040 PF01144 Coenzyme A transferase skT53_15050 PF00596 Class II Aldolase and Adducin N-terminal domain skT53_15070 PF01966 HD domain skT53_15100 PF01521 Iron-sulphur cluster biosynthesis skT53_15110 PF01209 ubiE/COQ5 methyltransferase family skT53_15160 PF06725 3D domain skT53_15160 PF01476 LysM domain skT53_15170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain skT53_15170 PF01276 Orn/Lys/Arg decarboxylase, major domain skT53_15180 PF00877 NlpC/P60 family skT53_15180 PF01476 LysM domain skT53_15200 PF08741 YwhD family skT53_15210 PF00892 EamA-like transporter family skT53_15220 PF01678 Diaminopimelate epimerase skT53_15230 PF00675 Insulinase (Peptidase family M16) skT53_15230 PF05193 Peptidase M16 inactive domain skT53_15240 PF03960 ArsC family skT53_15250 PF00210 Ferritin-like domain skT53_15270 PF03992 Antibiotic biosynthesis monooxygenase skT53_15300 PF01790 Prolipoprotein diacylglyceryl transferase skT53_15330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_15330 PF00672 HAMP domain skT53_15340 PF03079 ARD/ARD' family skT53_15350 PF00596 Class II Aldolase and Adducin N-terminal domain skT53_15370 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain skT53_15370 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain skT53_15380 PF00155 Aminotransferase class I and II skT53_15390 PF01098 Cell cycle protein skT53_15400 PF00425 chorismate binding enzyme skT53_15400 PF04715 Anthranilate synthase component I, N terminal region skT53_15410 PF01098 Cell cycle protein skT53_15420 PF00258 Flavodoxin skT53_15420 PF00753 Metallo-beta-lactamase superfamily skT53_15440 PF00899 ThiF family skT53_15470 PF01551 Peptidase family M23 skT53_15520 PF01242 6-pyruvoyl tetrahydropterin synthase skT53_15530 PF04055 Radical SAM superfamily skT53_15540 PF06508 Queuosine biosynthesis protein QueC skT53_15560 PF03009 Glycerophosphoryl diester phosphodiesterase family skT53_15590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) skT53_15590 PF01348 Type II intron maturase skT53_15600 PF02875 Mur ligase family, glutamate ligase domain skT53_15600 PF08245 Mur ligase middle domain skT53_15600 PF01225 Mur ligase family, catalytic domain skT53_15610 PF00675 Insulinase (Peptidase family M16) skT53_15610 PF05193 Peptidase M16 inactive domain skT53_15620 PF05193 Peptidase M16 inactive domain skT53_15640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_15640 PF03466 LysR substrate binding domain skT53_15650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_15650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_15660 PF01966 HD domain skT53_15660 PF00072 Response regulator receiver domain skT53_15690 PF02310 B12 binding domain skT53_15690 PF01642 Methylmalonyl-CoA mutase skT53_15700 PF00440 Bacterial regulatory proteins, tetR family skT53_15700 PF08359 YsiA-like protein, C-terminal region skT53_15720 PF13458 Periplasmic binding protein skT53_15730 PF00005 ABC transporter skT53_15740 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_15740 PF00005 ABC transporter skT53_15750 PF11862 Domain of unknown function (DUF3382) skT53_15750 PF02653 Branched-chain amino acid transport system / permease component skT53_15760 PF02653 Branched-chain amino acid transport system / permease component skT53_15790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_15790 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_15790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_15800 PF02803 Thiolase, C-terminal domain skT53_15800 PF00108 Thiolase, N-terminal domain skT53_15810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain skT53_15810 PF00378 Enoyl-CoA hydratase/isomerase skT53_15810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain skT53_15830 PF02675 S-adenosylmethionine decarboxylase skT53_15840 PF01871 AMMECR1 skT53_15840 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase skT53_15900 PF00766 Electron transfer flavoprotein FAD-binding domain skT53_15900 PF01012 Electron transfer flavoprotein domain skT53_15910 PF01012 Electron transfer flavoprotein domain skT53_15920 PF03475 3-alpha domain skT53_15920 PF03473 MOSC domain skT53_15930 PF14489 QueF-like protein skT53_16060 PF00437 Type II/IV secretion system protein skT53_16070 PF13614 AAA domain skT53_16140 PF00155 Aminotransferase class I and II skT53_16150 PF02654 Cobalamin-5-phosphate synthase skT53_16160 PF03186 CobD/Cbib protein skT53_16170 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase skT53_16180 PF02277 Phosphoribosyltransferase skT53_16200 PF01758 Sodium Bile acid symporter family skT53_16210 PF03816 Cell envelope-related transcriptional attenuator domain skT53_16240 PF02567 Phenazine biosynthesis-like protein skT53_16250 PF07690 Major Facilitator Superfamily skT53_16260 PF13411 MerR HTH family regulatory protein skT53_16280 PF00171 Aldehyde dehydrogenase family skT53_16290 PF01619 Proline dehydrogenase skT53_16310 PF05167 Uncharacterised ACR (DUF711) skT53_16320 PF01548 Transposase skT53_16320 PF02371 Transposase IS116/IS110/IS902 family skT53_16330 PF02954 Bacterial regulatory protein, Fis family skT53_16330 PF00158 Sigma-54 interaction domain skT53_16330 PF13426 PAS domain skT53_16340 PF08882 Acetone carboxylase gamma subunit skT53_16350 PF02538 Hydantoinase B/oxoprolinase skT53_16360 PF01968 Hydantoinase/oxoprolinase skT53_16360 PF05378 Hydantoinase/oxoprolinase N-terminal region skT53_16380 PF00291 Pyridoxal-phosphate dependent enzyme skT53_16390 PF00291 Pyridoxal-phosphate dependent enzyme skT53_16400 PF00378 Enoyl-CoA hydratase/isomerase skT53_16420 PF14034 Sporulation protein YtrH skT53_16510 PF10676 Spore germination protein gerPA/gerPF skT53_16600 PF08241 Methyltransferase domain skT53_16620 PF00581 Rhodanese-like domain skT53_16660 PF01230 HIT domain skT53_16710 PF00296 Luciferase-like monooxygenase skT53_16720 PF01625 Peptide methionine sulfoxide reductase skT53_16720 PF01641 SelR domain skT53_16760 PF01551 Peptidase family M23 skT53_16770 PF13378 Enolase C-terminal domain-like skT53_16770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain skT53_16780 PF03060 Nitronate monooxygenase skT53_16790 PF13382 Adenine deaminase C-terminal domain skT53_16790 PF01979 Amidohydrolase family skT53_16800 PF00107 Zinc-binding dehydrogenase skT53_16800 PF08240 Alcohol dehydrogenase GroES-like domain skT53_16810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_16810 PF00512 His Kinase A (phospho-acceptor) domain skT53_16810 PF00989 PAS fold skT53_16830 PF00578 AhpC/TSA family skT53_16840 PF02683 Cytochrome C biogenesis protein transmembrane region skT53_16850 PF07690 Major Facilitator Superfamily skT53_16860 PF02754 Cysteine-rich domain skT53_16860 PF13183 4Fe-4S dicluster domain skT53_16870 PF02913 FAD linked oxidases, C-terminal domain skT53_16870 PF01565 FAD binding domain skT53_16880 PF05721 Phytanoyl-CoA dioxygenase (PhyH) skT53_16890 PF06339 Ectoine synthase skT53_16900 PF00202 Aminotransferase class-III skT53_16910 PF00583 Acetyltransferase (GNAT) family skT53_16920 PF00005 ABC transporter skT53_16930 PF00528 Binding-protein-dependent transport system inner membrane component skT53_16940 PF00528 Binding-protein-dependent transport system inner membrane component skT53_16950 PF00497 Bacterial extracellular solute-binding proteins, family 3 skT53_16980 PF00392 Bacterial regulatory proteins, gntR family skT53_16980 PF07729 FCD domain skT53_16990 PF00963 Cohesin domain skT53_16990 PF00395 S-layer homology domain skT53_17000 PF02401 LytB protein skT53_17010 PF00085 Thioredoxin skT53_17020 PF13091 PLD-like domain skT53_17020 PF13396 Phospholipase_D-nuclease N-terminal skT53_17070 PF01594 AI-2E family transporter skT53_17080 PF00459 Inositol monophosphatase family skT53_17090 PF01451 Low molecular weight phosphotyrosine protein phosphatase skT53_17100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD skT53_17120 PF00766 Electron transfer flavoprotein FAD-binding domain skT53_17120 PF01012 Electron transfer flavoprotein domain skT53_17130 PF01012 Electron transfer flavoprotein domain skT53_17140 PF08359 YsiA-like protein, C-terminal region skT53_17140 PF00440 Bacterial regulatory proteins, tetR family skT53_17160 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) skT53_17170 PF10057 Uncharacterized conserved protein (DUF2294) skT53_17180 PF00872 Transposase, Mutator family skT53_17190 PF00484 Carbonic anhydrase skT53_17200 PF04298 Putative neutral zinc metallopeptidase skT53_17210 PF02261 Aspartate decarboxylase skT53_17220 PF00291 Pyridoxal-phosphate dependent enzyme skT53_17240 PF01584 CheW-like domain skT53_17250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_17250 PF17202 Single cache domain 3 skT53_17250 PF00672 HAMP domain skT53_17270 PF11799 impB/mucB/samB family C-terminal domain skT53_17270 PF00817 impB/mucB/samB family skT53_17290 PF07690 Major Facilitator Superfamily skT53_17310 PF00704 Glycosyl hydrolases family 18 skT53_17310 PF01476 LysM domain skT53_17340 PF14748 Pyrroline-5-carboxylate reductase dimerisation skT53_17340 PF03807 NADP oxidoreductase coenzyme F420-dependent skT53_17350 PF00171 Aldehyde dehydrogenase family skT53_17360 PF01472 PUA domain skT53_17360 PF00696 Amino acid kinase family skT53_17370 PF02913 FAD linked oxidases, C-terminal domain skT53_17370 PF01565 FAD binding domain skT53_17390 PF02646 RmuC family skT53_17400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_17400 PF03466 LysR substrate binding domain skT53_17410 PF08240 Alcohol dehydrogenase GroES-like domain skT53_17410 PF00107 Zinc-binding dehydrogenase skT53_17420 PF13361 UvrD-like helicase C-terminal domain skT53_17420 PF00580 UvrD/REP helicase N-terminal domain skT53_17420 PF12705 PD-(D/E)XK nuclease superfamily skT53_17430 PF12705 PD-(D/E)XK nuclease superfamily skT53_17440 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 skT53_17440 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) skT53_17460 PF04303 PrpF protein skT53_17470 PF00180 Isocitrate/isopropylmalate dehydrogenase skT53_17480 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component skT53_17500 PF03480 Bacterial extracellular solute-binding protein, family 7 skT53_17510 PF01012 Electron transfer flavoprotein domain skT53_17510 PF00766 Electron transfer flavoprotein FAD-binding domain skT53_17520 PF01012 Electron transfer flavoprotein domain skT53_17530 PF14537 Cytochrome c3 skT53_17530 PF00890 FAD binding domain skT53_17540 PF03466 LysR substrate binding domain skT53_17540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_17550 PF06962 Putative rRNA methylase skT53_17560 PF16199 Radical_SAM C-terminal domain skT53_17560 PF04055 Radical SAM superfamily skT53_17570 PF12787 EcsC protein family skT53_17580 PF07859 alpha/beta hydrolase fold skT53_17630 PF01293 Phosphoenolpyruvate carboxykinase skT53_17640 PF00005 ABC transporter skT53_17650 PF00005 ABC transporter skT53_17660 PF02632 BioY family skT53_17670 PF01250 Ribosomal protein S6 skT53_17680 PF01084 Ribosomal protein S18 skT53_17690 PF00707 Translation initiation factor IF-3, C-terminal domain skT53_17690 PF05198 Translation initiation factor IF-3, N-terminal domain skT53_17700 PF01632 Ribosomal protein L35 skT53_17710 PF00453 Ribosomal protein L20 skT53_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_17740 PF03466 LysR substrate binding domain skT53_17760 PF00330 Aconitase family (aconitate hydratase) skT53_17770 PF00694 Aconitase C-terminal domain skT53_17790 PF08281 Sigma-70, region 4 skT53_17790 PF04542 Sigma-70 region 2 skT53_17820 PF00342 Phosphoglucose isomerase skT53_17920 PF03190 Protein of unknown function, DUF255 skT53_17930 PF03190 Protein of unknown function, DUF255 skT53_17960 PF03852 DNA mismatch endonuclease Vsr skT53_17970 PF00145 C-5 cytosine-specific DNA methylase skT53_18050 PF04284 Protein of unknown function (DUF441) skT53_18060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain skT53_18060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain skT53_18070 PF01565 FAD binding domain skT53_18070 PF02913 FAD linked oxidases, C-terminal domain skT53_18080 PF02754 Cysteine-rich domain skT53_18080 PF13183 4Fe-4S dicluster domain skT53_18090 PF02913 FAD linked oxidases, C-terminal domain skT53_18090 PF01565 FAD binding domain skT53_18100 PF07690 Major Facilitator Superfamily skT53_18140 PF08240 Alcohol dehydrogenase GroES-like domain skT53_18140 PF00107 Zinc-binding dehydrogenase skT53_18170 PF03845 Spore germination protein skT53_18190 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_18220 PF00378 Enoyl-CoA hydratase/isomerase skT53_18230 PF00158 Sigma-54 interaction domain skT53_18230 PF02954 Bacterial regulatory protein, Fis family skT53_18230 PF00989 PAS fold skT53_18240 PF00108 Thiolase, N-terminal domain skT53_18240 PF02803 Thiolase, C-terminal domain skT53_18250 PF01144 Coenzyme A transferase skT53_18260 PF01144 Coenzyme A transferase skT53_18270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain skT53_18270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain skT53_18280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_18280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_18280 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_18290 PF13193 AMP-binding enzyme C-terminal domain skT53_18290 PF00501 AMP-binding enzyme skT53_18300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_18300 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_18300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_18310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain skT53_18310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain skT53_18330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_18330 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_18330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_18340 PF02515 CoA-transferase family III skT53_18360 PF13193 AMP-binding enzyme C-terminal domain skT53_18360 PF00501 AMP-binding enzyme skT53_18370 PF06779 Uncharacterised MFS-type transporter YbfB skT53_18380 PF03060 Nitronate monooxygenase skT53_18390 PF07501 G5 domain skT53_18390 PF06725 3D domain skT53_18390 PF03990 G5-linked-Ubiquitin-like domain skT53_18410 PF03853 YjeF-related protein N-terminus skT53_18410 PF01256 Carbohydrate kinase skT53_18450 PF00575 S1 RNA binding domain skT53_18460 PF00106 short chain dehydrogenase skT53_18470 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_18480 PF01476 LysM domain skT53_18480 PF00704 Glycosyl hydrolases family 18 skT53_18490 PF00005 ABC transporter skT53_18500 PF02074 Carboxypeptidase Taq (M32) metallopeptidase skT53_18530 PF09335 SNARE associated Golgi protein skT53_18550 PF01040 UbiA prenyltransferase family skT53_18560 PF00115 Cytochrome C and Quinol oxidase polypeptide I skT53_18570 PF02790 Cytochrome C oxidase subunit II, transmembrane domain skT53_18570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain skT53_18580 PF02926 THUMP domain skT53_18580 PF01170 Putative RNA methylase family UPF0020 skT53_18600 PF13419 Haloacid dehalogenase-like hydrolase skT53_18610 PF07681 DoxX skT53_18640 PF02965 Vitamin B12 dependent methionine synthase, activation domain skT53_18640 PF02310 B12 binding domain skT53_18640 PF00809 Pterin binding enzyme skT53_18640 PF02574 Homocysteine S-methyltransferase skT53_18640 PF02607 B12 binding domain skT53_18660 PF00115 Cytochrome C and Quinol oxidase polypeptide I skT53_18670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain skT53_18670 PF09125 Cytochrome C oxidase subunit II, transmembrane skT53_18690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_18690 PF02743 Cache domain skT53_18690 PF00672 HAMP domain skT53_18710 PF01593 Flavin containing amine oxidoreductase skT53_18720 PF00762 Ferrochelatase skT53_18730 PF01208 Uroporphyrinogen decarboxylase (URO-D) skT53_18740 PF06778 Chlorite dismutase skT53_18750 PF00543 Nitrogen regulatory protein P-II skT53_18760 PF00909 Ammonium Transporter Family skT53_18770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_18770 PF00205 Thiamine pyrophosphate enzyme, central domain skT53_18770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_18780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_18780 PF00512 His Kinase A (phospho-acceptor) domain skT53_18790 PF00072 Response regulator receiver domain skT53_18790 PF00486 Transcriptional regulatory protein, C terminal skT53_18820 PF13426 PAS domain skT53_18820 PF02954 Bacterial regulatory protein, Fis family skT53_18820 PF00158 Sigma-54 interaction domain skT53_18830 PF08240 Alcohol dehydrogenase GroES-like domain skT53_18830 PF00107 Zinc-binding dehydrogenase skT53_18860 PF00248 Aldo/keto reductase family skT53_18870 PF00248 Aldo/keto reductase family skT53_18880 PF00248 Aldo/keto reductase family skT53_18890 PF00578 AhpC/TSA family skT53_18970 PF00326 Prolyl oligopeptidase family skT53_18980 PF04298 Putative neutral zinc metallopeptidase skT53_18990 PF01595 Cyclin M transmembrane N-terminal domain skT53_18990 PF03471 Transporter associated domain skT53_18990 PF00571 CBS domain skT53_19000 PF13411 MerR HTH family regulatory protein skT53_19010 PF00067 Cytochrome P450 skT53_19040 PF07286 Protein of unknown function (DUF1445) skT53_19050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component skT53_19070 PF03480 Bacterial extracellular solute-binding protein, family 7 skT53_19080 PF00795 Carbon-nitrogen hydrolase skT53_19100 PF00392 Bacterial regulatory proteins, gntR family skT53_19100 PF07729 FCD domain skT53_19110 PF00561 alpha/beta hydrolase fold skT53_19120 PF01904 Protein of unknown function DUF72 skT53_19130 PF01522 Polysaccharide deacetylase skT53_19140 PF14398 YheC/D like ATP-grasp skT53_19180 PF01425 Amidase skT53_19200 PF03372 Endonuclease/Exonuclease/phosphatase family skT53_19210 PF01668 SmpB protein skT53_19230 PF17876 Cold shock domain skT53_19230 PF08206 Ribonuclease B OB domain skT53_19230 PF00575 S1 RNA binding domain skT53_19230 PF00773 RNB domain skT53_19240 PF12146 Serine aminopeptidase, S33 skT53_19250 PF03840 Preprotein translocase SecG subunit skT53_19260 PF03952 Enolase, N-terminal domain skT53_19260 PF00113 Enolase, C-terminal TIM barrel domain skT53_19270 PF01676 Metalloenzyme superfamily skT53_19270 PF06415 BPG-independent PGAM N-terminus (iPGM_N) skT53_19280 PF00121 Triosephosphate isomerase skT53_19290 PF00162 Phosphoglycerate kinase skT53_19300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain skT53_19300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain skT53_19310 PF04198 Putative sugar-binding domain skT53_19320 PF04552 Sigma-54, DNA binding domain skT53_19320 PF04963 Sigma-54 factor, core binding domain skT53_19320 PF00309 Sigma-54 factor, Activator interacting domain (AID) skT53_19340 PF14748 Pyrroline-5-carboxylate reductase dimerisation skT53_19340 PF03807 NADP oxidoreductase coenzyme F420-dependent skT53_19350 PF08543 Phosphomethylpyrimidine kinase skT53_19390 PF04293 SpoVR like protein skT53_19400 PF04285 Protein of unknown function (DUF444) skT53_19410 PF08298 PrkA AAA domain skT53_19410 PF06798 PrkA serine protein kinase C-terminal domain skT53_19460 PF00588 SpoU rRNA Methylase family skT53_19470 PF00588 SpoU rRNA Methylase family skT53_19490 PF12671 Putative amidase domain skT53_19500 PF09339 IclR helix-turn-helix domain skT53_19500 PF01614 Bacterial transcriptional regulator skT53_19520 PF00330 Aconitase family (aconitate hydratase) skT53_19520 PF00694 Aconitase C-terminal domain skT53_19530 PF00180 Isocitrate/isopropylmalate dehydrogenase skT53_19540 PF01476 LysM domain skT53_19540 PF00246 Zinc carboxypeptidase skT53_19570 PF08331 Domain of unknown function (DUF1730) skT53_19590 PF00075 RNase H skT53_19620 PF05504 Spore germination B3/ GerAC like, C-terminal skT53_19640 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_19660 PF18152 DAHP synthase ferredoxin-like domain skT53_19660 PF00793 DAHP synthetase I family skT53_19680 PF02872 5'-nucleotidase, C-terminal domain skT53_19690 PF13193 AMP-binding enzyme C-terminal domain skT53_19690 PF00501 AMP-binding enzyme skT53_19720 PF06335 Protein of unknown function (DUF1054) skT53_19740 PF03167 Uracil DNA glycosylase superfamily skT53_19760 PF04055 Radical SAM superfamily skT53_19760 PF06968 Biotin and Thiamin Synthesis associated domain skT53_19780 PF00155 Aminotransferase class I and II skT53_19790 PF00202 Aminotransferase class-III skT53_19810 PF10502 Signal peptidase, peptidase S26 skT53_19820 PF00269 Small, acid-soluble spore proteins, alpha/beta type skT53_19850 PF04167 Protein of unknown function (DUF402) skT53_19860 PF00149 Calcineurin-like phosphoesterase skT53_19920 PF00534 Glycosyl transferases group 1 skT53_19920 PF13439 Glycosyltransferase Family 4 skT53_19930 PF00392 Bacterial regulatory proteins, gntR family skT53_19930 PF07729 FCD domain skT53_19940 PF01027 Inhibitor of apoptosis-promoting Bax1 skT53_19960 PF14815 NUDIX domain skT53_19960 PF00730 HhH-GPD superfamily base excision DNA repair protein skT53_19980 PF00202 Aminotransferase class-III skT53_19990 PF02073 Thermophilic metalloprotease (M29) skT53_20040 PF05681 Fumarate hydratase (Fumerase) skT53_20040 PF05683 Fumarase C-terminus skT53_20050 PF00990 Diguanylate cyclase, GGDEF domain skT53_20050 PF01590 GAF domain skT53_20050 PF00563 EAL domain skT53_20050 PF00360 Phytochrome region skT53_20060 PF02673 Bacitracin resistance protein BacA skT53_20100 PF00583 Acetyltransferase (GNAT) family skT53_20130 PF00892 EamA-like transporter family skT53_20140 PF01588 Putative tRNA binding domain skT53_20160 PF02390 Putative methyltransferase skT53_20170 PF01966 HD domain skT53_20210 PF08439 Oligopeptidase F skT53_20210 PF01432 Peptidase family M3 skT53_20220 PF01152 Bacterial-like globin skT53_20230 PF01522 Polysaccharide deacetylase skT53_20260 PF00350 Dynamin family skT53_20270 PF00990 Diguanylate cyclase, GGDEF domain skT53_20280 PF03070 TENA/THI-4/PQQC family skT53_20320 PF02322 Cytochrome bd terminal oxidase subunit II skT53_20330 PF01654 Cytochrome bd terminal oxidase subunit I skT53_20340 PF03741 Integral membrane protein TerC family skT53_20360 PF01790 Prolipoprotein diacylglyceryl transferase skT53_20420 PF01458 Uncharacterized protein family (UPF0051) skT53_20430 PF01592 NifU-like N terminal domain skT53_20440 PF00266 Aminotransferase class-V skT53_20450 PF01458 Uncharacterized protein family (UPF0051) skT53_20460 PF00005 ABC transporter skT53_20470 PF02082 Transcriptional regulator skT53_20500 PF08240 Alcohol dehydrogenase GroES-like domain skT53_20500 PF00107 Zinc-binding dehydrogenase skT53_20510 PF01545 Cation efflux family skT53_20510 PF16916 Dimerisation domain of Zinc Transporter skT53_20530 PF02628 Cytochrome oxidase assembly protein skT53_20540 PF13536 Putative multidrug resistance efflux transporter skT53_20560 PF00860 Permease family skT53_20570 PF03641 Possible lysine decarboxylase skT53_20590 PF07690 Major Facilitator Superfamily skT53_20600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_20600 PF00672 HAMP domain skT53_20600 PF05227 CHASE3 domain skT53_20610 PF02899 Phage integrase, N-terminal SAM-like domain skT53_20610 PF00589 Phage integrase family skT53_20620 PF00672 HAMP domain skT53_20620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_20620 PF00512 His Kinase A (phospho-acceptor) domain skT53_20640 PF00486 Transcriptional regulatory protein, C terminal skT53_20640 PF00072 Response regulator receiver domain skT53_20670 PF07729 FCD domain skT53_20670 PF00392 Bacterial regulatory proteins, gntR family skT53_20680 PF17645 Arylmalonate decarboxylase skT53_20700 PF07690 Major Facilitator Superfamily skT53_20710 PF07690 Major Facilitator Superfamily skT53_20720 PF00011 Hsp20/alpha crystallin family skT53_20730 PF07517 SecA DEAD-like domain skT53_20730 PF02810 SEC-C motif skT53_20730 PF07516 SecA Wing and Scaffold domain skT53_20730 PF01043 SecA preprotein cross-linking domain skT53_20750 PF09827 CRISPR associated protein Cas2 skT53_20760 PF01867 CRISPR associated protein Cas1 skT53_20800 PF09704 CRISPR-associated protein (Cas_Cas5) skT53_20840 PF01938 TRAM domain skT53_20840 PF05958 tRNA (Uracil-5-)-methyltransferase skT53_20900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_20900 PF00512 His Kinase A (phospho-acceptor) domain skT53_20900 PF00989 PAS fold skT53_20900 PF13426 PAS domain skT53_20900 PF13188 PAS domain skT53_20910 PF00781 Diacylglycerol kinase catalytic domain skT53_20920 PF02637 GatB domain skT53_20920 PF02934 GatB/GatE catalytic domain skT53_20930 PF01425 Amidase skT53_20940 PF02686 Glu-tRNAGln amidotransferase C subunit skT53_20950 PF02558 Ketopantoate reductase PanE/ApbA skT53_20950 PF08546 Ketopantoate reductase PanE/ApbA C terminal skT53_20970 PF00581 Rhodanese-like domain skT53_20990 PF00953 Glycosyl transferase family 4 skT53_21010 PF01050 Mannose-6-phosphate isomerase skT53_21010 PF00483 Nucleotidyl transferase skT53_21020 PF00535 Glycosyl transferase family 2 skT53_21040 PF12728 Helix-turn-helix domain skT53_21040 PF12727 PBP superfamily domain skT53_21050 PF12849 PBP superfamily domain skT53_21060 PF00528 Binding-protein-dependent transport system inner membrane component skT53_21070 PF00005 ABC transporter skT53_21070 PF12857 TOBE-like domain skT53_21090 PF00171 Aldehyde dehydrogenase family skT53_21100 PF02954 Bacterial regulatory protein, Fis family skT53_21100 PF13426 PAS domain skT53_21100 PF00158 Sigma-54 interaction domain skT53_21120 PF05343 M42 glutamyl aminopeptidase skT53_21140 PF12826 Helix-hairpin-helix motif skT53_21140 PF01653 NAD-dependent DNA ligase adenylation domain skT53_21140 PF03120 NAD-dependent DNA ligase OB-fold domain skT53_21140 PF03119 NAD-dependent DNA ligase C4 zinc finger domain skT53_21140 PF00533 BRCA1 C Terminus (BRCT) domain skT53_21150 PF13361 UvrD-like helicase C-terminal domain skT53_21150 PF00580 UvrD/REP helicase N-terminal domain skT53_21170 PF02163 Peptidase family M50 skT53_21170 PF17820 PDZ domain skT53_21180 PF01884 PcrB family skT53_21190 PF01371 Trp repressor protein skT53_21220 PF05698 Bacterial trigger factor protein (TF) C-terminus skT53_21250 PF03485 Arginyl tRNA synthetase N terminal domain skT53_21250 PF05746 DALR anticodon binding domain skT53_21250 PF00750 tRNA synthetases class I (R) skT53_21260 PF03006 Haemolysin-III related skT53_21270 PF13667 ThiC-associated domain skT53_21270 PF01964 Radical SAM ThiC family skT53_21290 PF02222 ATP-grasp domain skT53_21300 PF07690 Major Facilitator Superfamily skT53_21320 PF00083 Sugar (and other) transporter skT53_21330 PF02843 Phosphoribosylglycinamide synthetase, C domain skT53_21330 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain skT53_21330 PF02844 Phosphoribosylglycinamide synthetase, N domain skT53_21340 PF02142 MGS-like domain skT53_21340 PF01808 AICARFT/IMPCHase bienzyme skT53_21350 PF00551 Formyl transferase skT53_21360 PF00586 AIR synthase related protein, N-terminal domain skT53_21360 PF02769 AIR synthase related protein, C-terminal domain skT53_21370 PF00156 Phosphoribosyl transferase domain skT53_21380 PF00586 AIR synthase related protein, N-terminal domain skT53_21380 PF02769 AIR synthase related protein, C-terminal domain skT53_21380 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain skT53_21400 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase skT53_21410 PF01259 SAICAR synthetase skT53_21420 PF08328 Adenylosuccinate lyase C-terminal skT53_21420 PF00206 Lyase skT53_21430 PF02222 ATP-grasp domain skT53_21430 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain skT53_21440 PF00731 AIR carboxylase skT53_21450 PF04343 Protein of unknown function, DUF488 skT53_21480 PF04551 GcpE protein skT53_21490 PF00860 Permease family skT53_21500 PF00958 GMP synthase C terminal domain skT53_21500 PF02540 NAD synthase skT53_21500 PF00117 Glutamine amidotransferase class-I skT53_21510 PF11992 Domain of unknown function (DUF3488) skT53_21510 PF13559 Domain of unknown function (DUF4129) skT53_21510 PF01841 Transglutaminase-like superfamily skT53_21530 PF17863 AAA lid domain skT53_21530 PF07726 ATPase family associated with various cellular activities (AAA) skT53_21580 PF03600 Citrate transporter skT53_21590 PF00118 TCP-1/cpn60 chaperonin family skT53_21600 PF00166 Chaperonin 10 Kd subunit skT53_21610 PF13419 Haloacid dehalogenase-like hydrolase skT53_21620 PF00902 Sec-independent protein translocase protein (TatC) skT53_21630 PF03205 Molybdopterin guanine dinucleotide synthesis protein B skT53_21640 PF03453 MoeA N-terminal region (domain I and II) skT53_21640 PF03454 MoeA C-terminal region (domain IV) skT53_21640 PF00994 Probable molybdopterin binding domain skT53_21650 PF02464 Competence-damaged protein skT53_21650 PF00994 Probable molybdopterin binding domain skT53_21670 PF00106 short chain dehydrogenase skT53_21680 PF01812 5-formyltetrahydrofolate cyclo-ligase family skT53_21690 PF16326 ABC transporter C-terminal domain skT53_21690 PF12848 ABC transporter skT53_21690 PF00005 ABC transporter skT53_21730 PF00512 His Kinase A (phospho-acceptor) domain skT53_21730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_21730 PF00989 PAS fold skT53_21740 PF00814 Glycoprotease family skT53_21750 PF00583 Acetyltransferase (GNAT) family skT53_21760 PF00814 Glycoprotease family skT53_21770 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE skT53_21780 PF02769 AIR synthase related protein, C-terminal domain skT53_21780 PF00586 AIR synthase related protein, N-terminal domain skT53_21790 PF00072 Response regulator receiver domain skT53_21810 PF07875 Coat F domain skT53_21820 PF02743 Cache domain skT53_21820 PF00672 HAMP domain skT53_21820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_21830 PF09371 Tex-like protein N-terminal domain skT53_21830 PF16921 Tex protein YqgF-like domain skT53_21830 PF00575 S1 RNA binding domain skT53_21830 PF17674 HHH domain skT53_21870 PF05221 S-adenosyl-L-homocysteine hydrolase skT53_21870 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain skT53_21880 PF08222 CodY helix-turn-helix domain skT53_21880 PF06018 CodY GAF-like domain skT53_21910 PF12832 MFS_1 like family skT53_21930 PF03061 Thioesterase superfamily skT53_21940 PF01411 tRNA synthetases class II (A) skT53_21940 PF02272 DHHA1 domain skT53_21940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain skT53_21970 PF02652 L-lactate permease skT53_21980 PF01381 Helix-turn-helix skT53_21990 PF07690 Major Facilitator Superfamily skT53_22000 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system skT53_22010 PF01402 Ribbon-helix-helix protein, copG family skT53_22020 PF01168 Alanine racemase, N-terminal domain skT53_22020 PF00842 Alanine racemase, C-terminal domain skT53_22050 PF00989 PAS fold skT53_22050 PF13188 PAS domain skT53_22050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_22050 PF13426 PAS domain skT53_22050 PF00512 His Kinase A (phospho-acceptor) domain skT53_22060 PF16916 Dimerisation domain of Zinc Transporter skT53_22060 PF01545 Cation efflux family skT53_22100 PF07690 Major Facilitator Superfamily skT53_22110 PF03737 Aldolase/RraA skT53_22120 PF03862 SpoVAC/SpoVAEB sporulation membrane protein skT53_22130 PF07451 Stage V sporulation protein AD (SpoVAD) skT53_22140 PF03862 SpoVAC/SpoVAEB sporulation membrane protein skT53_22150 PF04239 Protein of unknown function (DUF421) skT53_22170 PF04307 LexA-binding, inner membrane-associated putative hydrolase skT53_22180 PF00248 Aldo/keto reductase family skT53_22190 PF01738 Dienelactone hydrolase family skT53_22200 PF00106 short chain dehydrogenase skT53_22210 PF08240 Alcohol dehydrogenase GroES-like domain skT53_22210 PF00107 Zinc-binding dehydrogenase skT53_22210 PF16197 Ketoacyl-synthetase C-terminal extension skT53_22210 PF00109 Beta-ketoacyl synthase, N-terminal domain skT53_22210 PF02801 Beta-ketoacyl synthase, C-terminal domain skT53_22210 PF08659 KR domain skT53_22210 PF00698 Acyl transferase domain skT53_22210 PF00550 Phosphopantetheine attachment site skT53_22210 PF14765 Polyketide synthase dehydratase skT53_22230 PF00571 CBS domain skT53_22230 PF03471 Transporter associated domain skT53_22230 PF01595 Cyclin M transmembrane N-terminal domain skT53_22240 PF00583 Acetyltransferase (GNAT) family skT53_22250 PF07690 Major Facilitator Superfamily skT53_22260 PF03167 Uracil DNA glycosylase superfamily skT53_22270 PF01638 HxlR-like helix-turn-helix skT53_22280 PF07681 DoxX skT53_22290 PF01638 HxlR-like helix-turn-helix skT53_22300 PF07681 DoxX skT53_22310 PF17954 Quercetinase C-terminal cupin domain skT53_22310 PF02678 Pirin skT53_22320 PF03358 NADPH-dependent FMN reductase skT53_22360 PF00970 Oxidoreductase FAD-binding domain skT53_22360 PF00042 Globin skT53_22360 PF00175 Oxidoreductase NAD-binding domain skT53_22370 PF00291 Pyridoxal-phosphate dependent enzyme skT53_22390 PF13823 Alcohol dehydrogenase GroES-associated skT53_22390 PF08240 Alcohol dehydrogenase GroES-like domain skT53_22390 PF00107 Zinc-binding dehydrogenase skT53_22400 PF07875 Coat F domain skT53_22430 PF00474 Sodium:solute symporter family skT53_22440 PF04341 Protein of unknown function, DUF485 skT53_22450 PF13193 AMP-binding enzyme C-terminal domain skT53_22450 PF00501 AMP-binding enzyme skT53_22460 PF00474 Sodium:solute symporter family skT53_22470 PF06580 Histidine kinase skT53_22470 PF07694 5TMR of 5TMR-LYT skT53_22470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_22480 PF00072 Response regulator receiver domain skT53_22480 PF04397 LytTr DNA-binding domain skT53_22510 PF00890 FAD binding domain skT53_22510 PF02910 Fumarate reductase flavoprotein C-term skT53_22520 PF13085 2Fe-2S iron-sulfur cluster binding domain skT53_22520 PF13183 4Fe-4S dicluster domain skT53_22550 PF00990 Diguanylate cyclase, GGDEF domain skT53_22580 PF01381 Helix-turn-helix skT53_22590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain skT53_22590 PF00403 Heavy-metal-associated domain skT53_22590 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_22610 PF13411 MerR HTH family regulatory protein skT53_22620 PF00440 Bacterial regulatory proteins, tetR family skT53_22640 PF00248 Aldo/keto reductase family skT53_22660 PF13958 Toxin ToxN, type III toxin-antitoxin system skT53_22690 PF01380 SIS domain skT53_22700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II skT53_22700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain skT53_22700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III skT53_22700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I skT53_22710 PF00486 Transcriptional regulatory protein, C terminal skT53_22710 PF00072 Response regulator receiver domain skT53_22720 PF00486 Transcriptional regulatory protein, C terminal skT53_22720 PF00072 Response regulator receiver domain skT53_22740 PF02457 DisA bacterial checkpoint controller nucleotide-binding skT53_22750 PF14306 PUA-like domain skT53_22750 PF01747 ATP-sulfurylase skT53_22760 PF01925 Sulfite exporter TauE/SafE skT53_22770 PF01507 Phosphoadenosine phosphosulfate reductase family skT53_22780 PF00491 Arginase family skT53_22810 PF01522 Polysaccharide deacetylase skT53_22840 PF10609 NUBPL iron-transfer P-loop NTPase skT53_22850 PF01520 N-acetylmuramoyl-L-alanine amidase skT53_22860 PF03323 Bacillus/Clostridium GerA spore germination protein skT53_22870 PF05504 Spore germination B3/ GerAC like, C-terminal skT53_22890 PF03845 Spore germination protein skT53_22920 PF00380 Ribosomal protein S9/S16 skT53_22930 PF00572 Ribosomal protein L13 skT53_22940 PF01416 tRNA pseudouridine synthase skT53_22950 PF01196 Ribosomal protein L17 skT53_22960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain skT53_22960 PF01000 RNA polymerase Rpb3/RpoA insert domain skT53_22960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain skT53_22970 PF00163 Ribosomal protein S4/S9 N-terminal domain skT53_22970 PF01479 S4 domain skT53_22980 PF00411 Ribosomal protein S11 skT53_22990 PF00416 Ribosomal protein S13/S18 skT53_23000 PF01176 Translation initiation factor 1A / IF-1 skT53_23020 PF00557 Metallopeptidase family M24 skT53_23030 PF05191 Adenylate kinase, active site lid skT53_23040 PF00344 SecY translocase skT53_23050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A skT53_23060 PF00327 Ribosomal protein L30p/L7e skT53_23070 PF03719 Ribosomal protein S5, C-terminal domain skT53_23070 PF00333 Ribosomal protein S5, N-terminal domain skT53_23080 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast skT53_23090 PF00347 Ribosomal protein L6 skT53_23100 PF00410 Ribosomal protein S8 skT53_23110 PF00253 Ribosomal protein S14p/S29e skT53_23120 PF00673 ribosomal L5P family C-terminus skT53_23120 PF00281 Ribosomal protein L5 skT53_23130 PF00467 KOW motif skT53_23130 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 skT53_23140 PF00238 Ribosomal protein L14p/L23e skT53_23150 PF00366 Ribosomal protein S17 skT53_23160 PF00831 Ribosomal L29 protein skT53_23170 PF00252 Ribosomal protein L16p/L10e skT53_23180 PF00189 Ribosomal protein S3, C-terminal domain skT53_23180 PF07650 KH domain skT53_23190 PF00237 Ribosomal protein L22p/L17e skT53_23200 PF00203 Ribosomal protein S19 skT53_23210 PF03947 Ribosomal Proteins L2, C-terminal domain skT53_23210 PF00181 Ribosomal Proteins L2, RNA binding domain skT53_23220 PF00276 Ribosomal protein L23 skT53_23230 PF00573 Ribosomal protein L4/L1 family skT53_23240 PF00297 Ribosomal protein L3 skT53_23250 PF00338 Ribosomal protein S10p/S20e skT53_23260 PF00009 Elongation factor Tu GTP binding domain skT53_23260 PF03144 Elongation factor Tu domain 2 skT53_23260 PF03143 Elongation factor Tu C-terminal domain skT53_23270 PF00009 Elongation factor Tu GTP binding domain skT53_23270 PF00679 Elongation factor G C-terminus skT53_23270 PF14492 Elongation Factor G, domain II skT53_23270 PF03764 Elongation factor G, domain IV skT53_23270 PF03144 Elongation factor Tu domain 2 skT53_23280 PF00177 Ribosomal protein S7p/S5e skT53_23290 PF00164 Ribosomal protein S12/S23 skT53_23300 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family skT53_23310 PF04998 RNA polymerase Rpb1, domain 5 skT53_23310 PF05000 RNA polymerase Rpb1, domain 4 skT53_23310 PF04997 RNA polymerase Rpb1, domain 1 skT53_23310 PF04983 RNA polymerase Rpb1, domain 3 skT53_23310 PF00623 RNA polymerase Rpb1, domain 2 skT53_23320 PF00562 RNA polymerase Rpb2, domain 6 skT53_23320 PF10385 RNA polymerase beta subunit external 1 domain skT53_23320 PF04560 RNA polymerase Rpb2, domain 7 skT53_23320 PF04561 RNA polymerase Rpb2, domain 2 skT53_23320 PF04565 RNA polymerase Rpb2, domain 3 skT53_23320 PF04563 RNA polymerase beta subunit skT53_23330 PF05175 Methyltransferase small domain skT53_23340 PF16320 Ribosomal protein L7/L12 dimerisation domain skT53_23340 PF00542 Ribosomal protein L7/L12 C-terminal domain skT53_23350 PF00466 Ribosomal protein L10 skT53_23360 PF00687 Ribosomal protein L1p/L10e family skT53_23370 PF03946 Ribosomal protein L11, N-terminal domain skT53_23370 PF00298 Ribosomal protein L11, RNA binding domain skT53_23380 PF02357 Transcription termination factor nusG skT53_23380 PF00467 KOW motif skT53_23390 PF00584 SecE/Sec61-gamma subunits of protein translocation complex skT53_23400 PF00471 Ribosomal protein L33 skT53_23410 PF08281 Sigma-70, region 4 skT53_23410 PF04542 Sigma-70 region 2 skT53_23420 PF05991 YacP-like NYN domain skT53_23430 PF08032 RNA 2'-O ribose methyltransferase substrate binding skT53_23430 PF00588 SpoU rRNA Methylase family skT53_23440 PF00636 Ribonuclease III domain skT53_23450 PF01406 tRNA synthetases class I (C) catalytic domain skT53_23450 PF09190 DALR domain skT53_23460 PF00132 Bacterial transferase hexapeptide (six repeats) skT53_23460 PF06426 Serine acetyltransferase, N-terminal skT53_23470 PF00749 tRNA synthetases class I (E and Q), catalytic domain skT53_23480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase skT53_23480 PF02542 YgbB family skT53_23500 PF01066 CDP-alcohol phosphatidyltransferase skT53_23510 PF10635 DisA bacterial checkpoint controller linker region skT53_23510 PF12826 Helix-hairpin-helix motif skT53_23510 PF02457 DisA bacterial checkpoint controller nucleotide-binding skT53_23520 PF18073 Rubredoxin metal binding domain skT53_23530 PF17871 AAA lid domain skT53_23530 PF10431 C-terminal, D2-small domain, of ClpB protein skT53_23530 PF02861 Clp amino terminal domain, pathogenicity island component skT53_23530 PF07724 AAA domain (Cdc48 subfamily) skT53_23530 PF00004 ATPase family associated with various cellular activities (AAA) skT53_23540 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain skT53_23550 PF02151 UvrB/uvrC motif skT53_23560 PF05848 CtsR N-terminal HTH domain skT53_23560 PF17727 CtsR C-terminal dimerization domain skT53_23590 PF00152 tRNA synthetases class II (D, K and N) skT53_23590 PF01336 OB-fold nucleic acid binding domain skT53_23600 PF03449 Transcription elongation factor, N-terminal skT53_23600 PF01272 Transcription elongation factor, GreA/GreB, C-term skT53_23620 PF01207 Dihydrouridine synthase (Dus) skT53_23630 PF01381 Helix-turn-helix skT53_23640 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) skT53_23640 PF02152 Dihydroneopterin aldolase skT53_23650 PF02152 Dihydroneopterin aldolase skT53_23660 PF00809 Pterin binding enzyme skT53_23670 PF00291 Pyridoxal-phosphate dependent enzyme skT53_23680 PF01430 Hsp33 protein skT53_23690 PF11799 impB/mucB/samB family C-terminal domain skT53_23690 PF00817 impB/mucB/samB family skT53_23690 PF11798 IMS family HHH motif skT53_23700 PF03309 Type III pantothenate kinase skT53_23710 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain skT53_23710 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain skT53_23720 PF17862 AAA+ lid domain skT53_23720 PF06480 FtsH Extracellular skT53_23720 PF00004 ATPase family associated with various cellular activities (AAA) skT53_23720 PF01434 Peptidase family M41 skT53_23730 PF00156 Phosphoribosyl transferase domain skT53_23740 PF11734 TilS substrate C-terminal domain skT53_23740 PF01171 PP-loop family skT53_23780 PF00092 von Willebrand factor type A domain skT53_23790 PF07228 Stage II sporulation protein E (SpoIIE) skT53_23800 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region skT53_23830 PF00575 S1 RNA binding domain skT53_23860 PF07873 YabP family skT53_23870 PF01479 S4 domain skT53_23880 PF00216 Bacterial DNA-binding protein skT53_23890 PF03819 MazG nucleotide pyrophosphohydrolase domain skT53_23890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_23900 PF01943 Polysaccharide biosynthesis protein skT53_23900 PF14667 Polysaccharide biosynthesis C-terminal domain skT53_23910 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin skT53_23910 PF15714 Stage V sporulation protein T C-terminal, transcription factor skT53_23920 PF02559 CarD-like/TRCF domain skT53_23920 PF17757 UvrB interaction domain skT53_23920 PF00271 Helicase conserved C-terminal domain skT53_23920 PF00270 DEAD/DEAH box helicase skT53_23920 PF03461 TRCF domain skT53_23940 PF01195 Peptidyl-tRNA hydrolase skT53_23960 PF01386 Ribosomal L25p family skT53_23960 PF14693 Ribosomal protein TL5, C-terminal domain skT53_23970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase skT53_23970 PF14572 Phosphoribosyl synthetase-associated domain skT53_23980 PF00483 Nucleotidyl transferase skT53_23980 PF00132 Bacterial transferase hexapeptide (six repeats) skT53_23990 PF04026 SpoVG skT53_24000 PF01042 Endoribonuclease L-PSP skT53_24010 PF09182 Bacterial purine repressor, N-terminal skT53_24010 PF00156 Phosphoribosyl transferase domain skT53_24030 PF00288 GHMP kinases N terminal domain skT53_24030 PF08544 GHMP kinases C terminal skT53_24040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain skT53_24040 PF02875 Mur ligase family, glutamate ligase domain skT53_24040 PF08245 Mur ligase middle domain skT53_24050 PF03575 Peptidase family S51 skT53_24060 PF00269 Small, acid-soluble spore proteins, alpha/beta type skT53_24070 PF06257 Biofilm formation stimulator VEG skT53_24080 PF05582 YabG peptidase U57 skT53_24100 PF02666 Phosphatidylserine decarboxylase skT53_24110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_24110 PF00512 His Kinase A (phospho-acceptor) domain skT53_24110 PF00989 PAS fold skT53_24110 PF13188 PAS domain skT53_24110 PF13426 PAS domain skT53_24130 PF00398 Ribosomal RNA adenine dimethylase skT53_24140 PF13331 Domain of unknown function (DUF4093) skT53_24140 PF13662 Toprim domain skT53_24150 PF01026 TatD related DNase skT53_24160 PF09334 tRNA synthetases class I (M) skT53_24160 PF01588 Putative tRNA binding domain skT53_24160 PF08264 Anticodon-binding domain of tRNA skT53_24170 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin skT53_24170 PF18277 AbrB C-terminal domain skT53_24180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_24190 PF05175 Methyltransferase small domain skT53_24200 PF06156 Initiation control protein YabA skT53_24210 PF04468 PSP1 C-terminal conserved region skT53_24220 PF09115 DNA polymerase III, delta subunit, C terminal skT53_24230 PF03885 Protein of unknown function (DUF327) skT53_24240 PF02223 Thymidylate kinase skT53_24250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain skT53_24250 PF01276 Orn/Lys/Arg decarboxylase, major domain skT53_24260 PF03949 Malic enzyme, NAD binding domain skT53_24260 PF00390 Malic enzyme, N-terminal domain skT53_24280 PF07441 SigmaK-factor processing regulatory protein BofA skT53_24300 PF13662 Toprim domain skT53_24300 PF02132 RecR protein skT53_24310 PF02575 YbaB/EbfC DNA-binding family skT53_24320 PF12169 DNA polymerase III subunits gamma and tau domain III skT53_24330 PF14437 MafB19-like deaminase skT53_24370 PF01381 Helix-turn-helix skT53_24420 PF02403 Seryl-tRNA synthetase N-terminal domain skT53_24420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) skT53_24430 PF01174 SNO glutamine amidotransferase family skT53_24440 PF01680 SOR/SNZ family skT53_24450 PF07943 Penicillin-binding protein 5, C-terminal domain skT53_24450 PF00768 D-alanyl-D-alanine carboxypeptidase skT53_24460 PF00478 IMP dehydrogenase / GMP reductase domain skT53_24460 PF00571 CBS domain skT53_24470 PF14175 YaaC-like Protein skT53_24480 PF00348 Polyprenyl synthetase skT53_24500 PF03989 DNA gyrase C-terminal domain, beta-propeller skT53_24500 PF00521 DNA gyrase/topoisomerase IV, subunit A skT53_24510 PF01751 Toprim domain skT53_24510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_24510 PF00204 DNA gyrase B skT53_24510 PF00986 DNA gyrase B subunit, carboxyl terminus skT53_24520 PF04025 Domain of unknown function (DUF370) skT53_24530 PF02463 RecF/RecN/SMC N terminal domain skT53_24550 PF02768 DNA polymerase III beta subunit, C-terminal domain skT53_24550 PF00712 DNA polymerase III beta subunit, N-terminal domain skT53_24550 PF02767 DNA polymerase III beta subunit, central domain skT53_24560 PF11638 DnaA N-terminal domain skT53_24560 PF08299 Bacterial dnaA protein helix-turn-helix skT53_24560 PF00308 Bacterial dnaA protein skT53_24570 PF00468 Ribosomal protein L34 skT53_24580 PF00825 Ribonuclease P skT53_24600 PF02096 60Kd inner membrane protein skT53_24610 PF14804 Jag N-terminus skT53_24610 PF01424 R3H domain skT53_24620 PF01926 50S ribosome-binding GTPase skT53_24620 PF12631 MnmE helical domain skT53_24620 PF10396 GTP-binding protein TrmE N-terminus skT53_24630 PF13932 GidA associated domain skT53_24630 PF01134 Glucose inhibited division protein A skT53_24640 PF02527 rRNA small subunit methyltransferase G skT53_24650 PF17762 HTH domain found in ParB protein skT53_24650 PF02195 ParB-like nuclease domain skT53_24660 PF13614 AAA domain skT53_24670 PF02195 ParB-like nuclease domain skT53_24670 PF17762 HTH domain found in ParB protein skT53_24680 PF00266 Aminotransferase class-V skT53_24730 PF12323 Helix-turn-helix domain skT53_24730 PF07282 Putative transposase DNA-binding domain skT53_24730 PF01385 Probable transposase skT53_24770 PF03698 Uncharacterised protein family (UPF0180) skT53_24800 PF06866 Protein of unknown function (DUF1256) skT53_24820 PF00924 Mechanosensitive ion channel skT53_24830 PF06107 Bacterial protein of unknown function (DUF951) skT53_24850 PF00313 'Cold-shock' DNA-binding domain skT53_24860 PF00270 DEAD/DEAH box helicase skT53_24860 PF00271 Helicase conserved C-terminal domain skT53_24870 PF00578 AhpC/TSA family skT53_24900 PF06071 Protein of unknown function (DUF933) skT53_24900 PF01926 50S ribosome-binding GTPase skT53_24910 PF00436 Single-strand binding protein family skT53_24920 PF07690 Major Facilitator Superfamily skT53_24930 PF01047 MarR family skT53_24950 PF07687 Peptidase dimerisation domain skT53_24950 PF01546 Peptidase family M20/M25/M40 skT53_24970 PF01425 Amidase skT53_24990 PF03626 Prokaryotic Cytochrome C oxidase subunit IV skT53_25000 PF00510 Cytochrome c oxidase subunit III skT53_25010 PF00115 Cytochrome C and Quinol oxidase polypeptide I skT53_25020 PF02790 Cytochrome C oxidase subunit II, transmembrane domain skT53_25040 PF03948 Ribosomal protein L9, C-terminal domain skT53_25040 PF01281 Ribosomal protein L9, N-terminal domain skT53_25050 PF00004 ATPase family associated with various cellular activities (AAA) skT53_25050 PF05362 Lon protease (S16) C-terminal proteolytic domain skT53_25060 PF03796 DnaB-like helicase C terminal domain skT53_25060 PF00772 DnaB-like helicase N terminal domain skT53_25070 PF00709 Adenylosuccinate synthetase skT53_25110 PF00072 Response regulator receiver domain skT53_25110 PF00486 Transcriptional regulatory protein, C terminal skT53_25120 PF13426 PAS domain skT53_25120 PF00672 HAMP domain skT53_25120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_25120 PF00512 His Kinase A (phospho-acceptor) domain skT53_25150 PF00753 Metallo-beta-lactamase superfamily skT53_25160 PF13180 PDZ domain skT53_25200 PF02590 Predicted SPOUT methyltransferase skT53_25260 PF07690 Major Facilitator Superfamily skT53_25290 PF00724 NADH:flavin oxidoreductase / NADH oxidase family skT53_25310 PF12704 MacB-like periplasmic core domain skT53_25310 PF02687 FtsX-like permease family skT53_25310 PF00005 ABC transporter skT53_25320 PF02687 FtsX-like permease family skT53_25320 PF00005 ABC transporter skT53_25320 PF12704 MacB-like periplasmic core domain skT53_25330 PF00005 ABC transporter skT53_25330 PF02687 FtsX-like permease family skT53_25330 PF12704 MacB-like periplasmic core domain skT53_25340 PF00313 'Cold-shock' DNA-binding domain skT53_25390 PF00701 Dihydrodipicolinate synthetase family skT53_25400 PF01557 Fumarylacetoacetate (FAA) hydrolase family skT53_25420 PF01061 ABC-2 type transporter skT53_25430 PF00005 ABC transporter skT53_25440 PF01047 MarR family skT53_25450 PF07690 Major Facilitator Superfamily skT53_25490 PF07875 Coat F domain skT53_25500 PF00072 Response regulator receiver domain skT53_25500 PF00486 Transcriptional regulatory protein, C terminal skT53_25530 PF00324 Amino acid permease skT53_25540 PF00749 tRNA synthetases class I (E and Q), catalytic domain skT53_25540 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain skT53_25550 PF02661 Fic/DOC family skT53_25580 PF00005 ABC transporter skT53_25590 PF00392 Bacterial regulatory proteins, gntR family skT53_25610 PF03167 Uracil DNA glycosylase superfamily skT53_25620 PF00248 Aldo/keto reductase family skT53_25670 PF17202 Single cache domain 3 skT53_25670 PF00672 HAMP domain skT53_25670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_25680 PF07690 Major Facilitator Superfamily skT53_25690 PF00581 Rhodanese-like domain skT53_25690 PF17773 UPF0176 acylphosphatase like domain skT53_25690 PF12368 Rhodanase C-terminal skT53_25700 PF00310 Glutamine amidotransferases class-II skT53_25700 PF04898 Glutamate synthase central domain skT53_25700 PF01645 Conserved region in glutamate synthase skT53_25700 PF01493 GXGXG motif skT53_25710 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_25710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster skT53_25720 PF13396 Phospholipase_D-nuclease N-terminal skT53_25720 PF13091 PLD-like domain skT53_25730 PF00664 ABC transporter transmembrane region skT53_25730 PF00005 ABC transporter skT53_25740 PF00005 ABC transporter skT53_25740 PF00664 ABC transporter transmembrane region skT53_25750 PF00563 EAL domain skT53_25750 PF03707 Bacterial signalling protein N terminal repeat skT53_25750 PF00990 Diguanylate cyclase, GGDEF domain skT53_25760 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component skT53_25770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component skT53_25780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_25780 PF01842 ACT domain skT53_25780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_25790 PF03480 Bacterial extracellular solute-binding protein, family 7 skT53_25820 PF00920 Dehydratase family skT53_25830 PF00294 pfkB family carbohydrate kinase skT53_25840 PF01081 KDPG and KHG aldolase skT53_25850 PF01614 Bacterial transcriptional regulator skT53_25850 PF09339 IclR helix-turn-helix domain skT53_25870 PF08666 SAF domain skT53_25870 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus skT53_25880 PF08666 SAF domain skT53_25880 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus skT53_25910 PF00563 EAL domain skT53_25910 PF03707 Bacterial signalling protein N terminal repeat skT53_25910 PF00990 Diguanylate cyclase, GGDEF domain skT53_25920 PF07722 Peptidase C26 skT53_25930 PF01425 Amidase skT53_25940 PF01614 Bacterial transcriptional regulator skT53_25940 PF09339 IclR helix-turn-helix domain skT53_25950 PF01274 Malate synthase skT53_25990 PF07875 Coat F domain skT53_26000 PF00269 Small, acid-soluble spore proteins, alpha/beta type skT53_26010 PF00581 Rhodanese-like domain skT53_26020 PF01751 Toprim domain skT53_26030 PF00463 Isocitrate lyase family skT53_26040 PF00092 von Willebrand factor type A domain skT53_26050 PF07728 AAA domain (dynein-related subfamily) skT53_26060 PF09671 Spore coat protein (Spore_GerQ) skT53_26100 PF02754 Cysteine-rich domain skT53_26110 PF02589 LUD domain skT53_26110 PF13183 4Fe-4S dicluster domain skT53_26110 PF11870 Domain of unknown function (DUF3390) skT53_26120 PF02589 LUD domain skT53_26130 PF03707 Bacterial signalling protein N terminal repeat skT53_26130 PF00990 Diguanylate cyclase, GGDEF domain skT53_26130 PF00563 EAL domain skT53_26140 PF00155 Aminotransferase class I and II skT53_26150 PF00905 Penicillin binding protein transpeptidase domain skT53_26150 PF00912 Transglycosylase skT53_26160 PF17284 Spermidine synthase tetramerisation domain skT53_26170 PF00491 Arginase family skT53_26210 PF00108 Thiolase, N-terminal domain skT53_26210 PF02803 Thiolase, C-terminal domain skT53_26220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain skT53_26220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain skT53_26230 PF00378 Enoyl-CoA hydratase/isomerase skT53_26240 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_26240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_26240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_26260 PF05066 HB1, ASXL, restriction endonuclease HTH domain skT53_26270 PF06418 CTP synthase N-terminus skT53_26270 PF00117 Glutamine amidotransferase class-I skT53_26280 PF00072 Response regulator receiver domain skT53_26290 PF01116 Fructose-bisphosphate aldolase class-II skT53_26300 PF00923 Transaldolase/Fructose-6-phosphate aldolase skT53_26310 PF14602 Hexapeptide repeat of succinyl-transferase skT53_26310 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal skT53_26310 PF00132 Bacterial transferase hexapeptide (six repeats) skT53_26320 PF01546 Peptidase family M20/M25/M40 skT53_26320 PF07687 Peptidase dimerisation domain skT53_26340 PF00155 Aminotransferase class I and II skT53_26360 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded skT53_26370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain skT53_26370 PF07498 Rho termination factor, N-terminal domain skT53_26370 PF07497 Rho termination factor, RNA-binding domain skT53_26400 PF01197 Ribosomal protein L31 skT53_26420 PF03462 PCRF domain skT53_26420 PF00472 RF-1 domain skT53_26430 PF13847 Methyltransferase domain skT53_26430 PF17827 PrmC N-terminal domain skT53_26440 PF16177 Acetyl-coenzyme A synthetase N-terminus skT53_26440 PF00501 AMP-binding enzyme skT53_26440 PF13193 AMP-binding enzyme C-terminal domain skT53_26450 PF09551 Stage II sporulation protein R (spore_II_R) skT53_26470 PF00795 Carbon-nitrogen hydrolase skT53_26470 PF00583 Acetyltransferase (GNAT) family skT53_26490 PF03481 Putative GTP-binding controlling metal-binding skT53_26490 PF01300 Telomere recombination skT53_26500 PF02659 Putative manganese efflux pump skT53_26510 PF01451 Low molecular weight phosphotyrosine protein phosphatase skT53_26520 PF02502 Ribose/Galactose Isomerase skT53_26530 PF04260 Protein of unknown function (DUF436) skT53_26540 PF00464 Serine hydroxymethyltransferase skT53_26560 PF18273 Type III R-M EcoP15I C-terminal domain skT53_26560 PF01555 DNA methylase skT53_26580 PF01381 Helix-turn-helix skT53_26690 PF02796 Helix-turn-helix domain of resolvase skT53_26690 PF00239 Resolvase, N terminal domain skT53_26840 PF13378 Enolase C-terminal domain-like skT53_26840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain skT53_26870 PF01970 Tripartite tricarboxylate transporter TctA family skT53_26880 PF01557 Fumarylacetoacetate (FAA) hydrolase family skT53_26900 PF07702 UTRA domain skT53_26900 PF00392 Bacterial regulatory proteins, gntR family skT53_26910 PF05145 Transition state regulatory protein AbrB skT53_26920 PF00392 Bacterial regulatory proteins, gntR family skT53_26920 PF07729 FCD domain skT53_26930 PF01266 FAD dependent oxidoreductase skT53_26960 PF07690 Major Facilitator Superfamily skT53_26970 PF02913 FAD linked oxidases, C-terminal domain skT53_26970 PF01565 FAD binding domain skT53_26980 PF13183 4Fe-4S dicluster domain skT53_26980 PF02754 Cysteine-rich domain skT53_26990 PF00180 Isocitrate/isopropylmalate dehydrogenase skT53_27010 PF02350 UDP-N-acetylglucosamine 2-epimerase skT53_27020 PF02803 Thiolase, C-terminal domain skT53_27020 PF00108 Thiolase, N-terminal domain skT53_27040 PF00119 ATP synthase A chain skT53_27050 PF00137 ATP synthase subunit C skT53_27070 PF00213 ATP synthase delta (OSCP) subunit skT53_27080 PF00306 ATP synthase alpha/beta chain, C terminal domain skT53_27080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain skT53_27080 PF02874 ATP synthase alpha/beta family, beta-barrel domain skT53_27090 PF00231 ATP synthase skT53_27100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain skT53_27100 PF02874 ATP synthase alpha/beta family, beta-barrel domain skT53_27110 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain skT53_27110 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain skT53_27120 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 skT53_27130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit skT53_27140 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit skT53_27150 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit skT53_27160 PF00146 NADH dehydrogenase skT53_27170 PF12838 4Fe-4S dicluster domain skT53_27180 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 skT53_27190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L skT53_27200 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus skT53_27200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus skT53_27200 PF00361 Proton-conducting membrane transporter skT53_27210 PF00361 Proton-conducting membrane transporter skT53_27220 PF00361 Proton-conducting membrane transporter skT53_27250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) skT53_27260 PF08486 Stage II sporulation protein skT53_27280 PF12116 Stage III sporulation protein D skT53_27300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal skT53_27300 PF00460 Flagella basal body rod protein skT53_27310 PF00460 Flagella basal body rod protein skT53_27310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal skT53_27320 PF01066 CDP-alcohol phosphatidyltransferase skT53_27330 PF07977 FabA-like domain skT53_27340 PF01205 Uncharacterized protein family UPF0029 skT53_27340 PF09186 Domain of unknown function (DUF1949) skT53_27350 PF00990 Diguanylate cyclase, GGDEF domain skT53_27350 PF07694 5TMR of 5TMR-LYT skT53_27360 PF00128 Alpha amylase, catalytic domain skT53_27360 PF02903 Alpha amylase, N-terminal ig-like domain skT53_27360 PF00395 S-layer homology domain skT53_27420 PF13439 Glycosyltransferase Family 4 skT53_27420 PF00534 Glycosyl transferases group 1 skT53_27470 PF00535 Glycosyl transferase family 2 skT53_27540 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system skT53_27550 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin skT53_27560 PF01569 PAP2 superfamily skT53_27570 PF09335 SNARE associated Golgi protein skT53_27600 PF14398 YheC/D like ATP-grasp skT53_27610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_27610 PF00512 His Kinase A (phospho-acceptor) domain skT53_27610 PF18719 ArlS sensor domain skT53_27620 PF00486 Transcriptional regulatory protein, C terminal skT53_27620 PF00072 Response regulator receiver domain skT53_27630 PF08239 Bacterial SH3 domain skT53_27630 PF01476 LysM domain skT53_27630 PF00877 NlpC/P60 family skT53_27640 PF01522 Polysaccharide deacetylase skT53_27650 PF07690 Major Facilitator Superfamily skT53_27660 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase skT53_27660 PF04101 Glycosyltransferase family 28 C-terminal domain skT53_27670 PF00534 Glycosyl transferases group 1 skT53_27670 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase skT53_27720 PF00005 ABC transporter skT53_27730 PF00535 Glycosyl transferase family 2 skT53_27750 PF00535 Glycosyl transferase family 2 skT53_27790 PF00483 Nucleotidyl transferase skT53_27800 PF16363 GDP-mannose 4,6 dehydratase skT53_27810 PF04321 RmlD substrate binding domain skT53_27830 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase skT53_27850 PF02397 Bacterial sugar transferase skT53_27860 PF01925 Sulfite exporter TauE/SafE skT53_27890 PF02811 PHP domain skT53_27920 PF16363 GDP-mannose 4,6 dehydratase skT53_27940 PF01047 MarR family skT53_27970 PF07690 Major Facilitator Superfamily skT53_27990 PF00873 AcrB/AcrD/AcrF family skT53_28000 PF07301 Protein of unknown function (DUF1453) skT53_28020 PF07690 Major Facilitator Superfamily skT53_28040 PF00873 AcrB/AcrD/AcrF family skT53_28070 PF00483 Nucleotidyl transferase skT53_28080 PF16363 GDP-mannose 4,6 dehydratase skT53_28090 PF16363 GDP-mannose 4,6 dehydratase skT53_28100 PF08889 WbqC-like protein family skT53_28120 PF05721 Phytanoyl-CoA dioxygenase (PhyH) skT53_28130 PF01209 ubiE/COQ5 methyltransferase family skT53_28140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain skT53_28140 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_28150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family skT53_28160 PF00483 Nucleotidyl transferase skT53_28190 PF03572 Peptidase family S41 skT53_28190 PF01471 Putative peptidoglycan binding domain skT53_28190 PF17820 PDZ domain skT53_28200 PF07282 Putative transposase DNA-binding domain skT53_28200 PF01385 Probable transposase skT53_28200 PF12323 Helix-turn-helix domain skT53_28210 PF14667 Polysaccharide biosynthesis C-terminal domain skT53_28210 PF01943 Polysaccharide biosynthesis protein skT53_28240 PF03816 Cell envelope-related transcriptional attenuator domain skT53_28250 PF03808 Glycosyl transferase WecB/TagA/CpsF family skT53_28260 PF02772 S-adenosylmethionine synthetase, central domain skT53_28260 PF00438 S-adenosylmethionine synthetase, N-terminal domain skT53_28260 PF02773 S-adenosylmethionine synthetase, C-terminal domain skT53_28270 PF05384 Sensor protein DegS skT53_28270 PF07730 Histidine kinase skT53_28270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_28280 PF00072 Response regulator receiver domain skT53_28280 PF00196 Bacterial regulatory proteins, luxR family skT53_28300 PF01569 PAP2 superfamily skT53_28310 PF00563 EAL domain skT53_28310 PF13188 PAS domain skT53_28310 PF00990 Diguanylate cyclase, GGDEF domain skT53_28310 PF03707 Bacterial signalling protein N terminal repeat skT53_28330 PF07282 Putative transposase DNA-binding domain skT53_28330 PF12323 Helix-turn-helix domain skT53_28330 PF01385 Probable transposase skT53_28340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_28340 PF00672 HAMP domain skT53_28340 PF02743 Cache domain skT53_28350 PF12849 PBP superfamily domain skT53_28360 PF00528 Binding-protein-dependent transport system inner membrane component skT53_28370 PF00528 Binding-protein-dependent transport system inner membrane component skT53_28380 PF00005 ABC transporter skT53_28390 PF01895 PhoU domain skT53_28410 PF01384 Phosphate transporter family skT53_28420 PF00072 Response regulator receiver domain skT53_28420 PF00486 Transcriptional regulatory protein, C terminal skT53_28430 PF16736 Single Cache-like skT53_28430 PF00512 His Kinase A (phospho-acceptor) domain skT53_28430 PF00989 PAS fold skT53_28430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_28440 PF02645 Uncharacterised protein, DegV family COG1307 skT53_28490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal skT53_28490 PF00460 Flagella basal body rod protein skT53_28500 PF00669 Bacterial flagellin N-terminal helical region skT53_28500 PF00700 Bacterial flagellin C-terminal helical region skT53_28520 PF02623 FliW protein skT53_28530 PF02599 Global regulator protein family skT53_28540 PF00669 Bacterial flagellin N-terminal helical region skT53_28540 PF00700 Bacterial flagellin C-terminal helical region skT53_28560 PF07195 Flagellar hook-associated protein 2 C-terminus skT53_28560 PF02465 Flagellar hook-associated protein 2 N-terminus skT53_28610 PF02561 Flagellar protein FliS skT53_28630 PF16363 GDP-mannose 4,6 dehydratase skT53_28640 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family skT53_28650 PF02350 UDP-N-acetylglucosamine 2-epimerase skT53_28660 PF08666 SAF domain skT53_28660 PF03102 NeuB family skT53_28680 PF00483 Nucleotidyl transferase skT53_28690 PF02348 Cytidylyltransferase skT53_28700 PF00497 Bacterial extracellular solute-binding proteins, family 3 skT53_28710 PF00528 Binding-protein-dependent transport system inner membrane component skT53_28720 PF00005 ABC transporter skT53_28730 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein skT53_28730 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus skT53_28750 PF07516 SecA Wing and Scaffold domain skT53_28750 PF02810 SEC-C motif skT53_28750 PF01043 SecA preprotein cross-linking domain skT53_28750 PF07517 SecA DEAD-like domain skT53_28760 PF07517 SecA DEAD-like domain skT53_28760 PF01043 SecA preprotein cross-linking domain skT53_28760 PF07516 SecA Wing and Scaffold domain skT53_28770 PF00472 RF-1 domain skT53_28770 PF03462 PCRF domain skT53_28780 PF02777 Iron/manganese superoxide dismutases, C-terminal domain skT53_28780 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain skT53_28800 PF00456 Transketolase, thiamine diphosphate binding domain skT53_28800 PF02779 Transketolase, pyrimidine binding domain skT53_28800 PF02780 Transketolase, C-terminal domain skT53_28820 PF01118 Semialdehyde dehydrogenase, NAD binding domain skT53_28820 PF02774 Semialdehyde dehydrogenase, dimerisation domain skT53_28830 PF01960 ArgJ family skT53_28840 PF00696 Amino acid kinase family skT53_28850 PF00202 Aminotransferase class-III skT53_28860 PF00205 Thiamine pyrophosphate enzyme, central domain skT53_28860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_28860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_28890 PF08240 Alcohol dehydrogenase GroES-like domain skT53_28890 PF00107 Zinc-binding dehydrogenase skT53_28900 PF07690 Major Facilitator Superfamily skT53_28910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain skT53_28910 PF00117 Glutamine amidotransferase class-I skT53_28920 PF02142 MGS-like domain skT53_28920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain skT53_28920 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain skT53_28930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain skT53_28930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain skT53_28940 PF00764 Arginosuccinate synthase skT53_28950 PF14698 Argininosuccinate lyase C-terminal skT53_28950 PF00206 Lyase skT53_28980 PF00005 ABC transporter skT53_28990 PF18075 FtsX extracellular domain skT53_28990 PF02687 FtsX-like permease family skT53_29000 PF17820 PDZ domain skT53_29000 PF01471 Putative peptidoglycan binding domain skT53_29000 PF03572 Peptidase family S41 skT53_29010 PF17820 PDZ domain skT53_29020 PF01618 MotA/TolQ/ExbB proton channel family skT53_29030 PF00691 OmpA family skT53_29030 PF13677 Membrane MotB of proton-channel complex MotA/MotB skT53_29040 PF02151 UvrB/uvrC motif skT53_29040 PF17757 UvrB interaction domain skT53_29040 PF00271 Helicase conserved C-terminal domain skT53_29040 PF12344 Ultra-violet resistance protein B skT53_29040 PF04851 Type III restriction enzyme, res subunit skT53_29050 PF17755 UvrA DNA-binding domain skT53_29050 PF17760 UvrA interaction domain skT53_29090 PF00196 Bacterial regulatory proteins, luxR family skT53_29090 PF00563 EAL domain skT53_29100 PF00072 Response regulator receiver domain skT53_29110 PF16363 GDP-mannose 4,6 dehydratase skT53_29120 PF07475 HPr Serine kinase C-terminal domain skT53_29120 PF02603 HPr Serine kinase N terminus skT53_29130 PF01464 Transglycosylase SLT domain skT53_29130 PF01551 Peptidase family M23 skT53_29130 PF10145 Phage-related minor tail protein skT53_29140 PF07670 Nucleoside recognition skT53_29150 PF13419 Haloacid dehalogenase-like hydrolase skT53_29160 PF14602 Hexapeptide repeat of succinyl-transferase skT53_29170 PF13393 Histidyl-tRNA synthetase skT53_29180 PF01634 ATP phosphoribosyltransferase skT53_29190 PF00815 Histidinol dehydrogenase skT53_29200 PF00475 Imidazoleglycerol-phosphate dehydratase skT53_29210 PF00117 Glutamine amidotransferase class-I skT53_29220 PF00977 Histidine biosynthesis protein skT53_29230 PF00977 Histidine biosynthesis protein skT53_29240 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase skT53_29240 PF01502 Phosphoribosyl-AMP cyclohydrolase skT53_29270 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_29280 PF03144 Elongation factor Tu domain 2 skT53_29280 PF09105 Elongation factor SelB, winged helix skT53_29280 PF09106 Elongation factor SelB, winged helix skT53_29280 PF09107 Elongation factor SelB, winged helix skT53_29280 PF00009 Elongation factor Tu GTP binding domain skT53_29290 PF00293 NUDIX domain skT53_29300 PF03668 P-loop ATPase protein family skT53_29310 PF01933 Uncharacterised protein family UPF0052 skT53_29320 PF14527 WhiA LAGLIDADG-like domain skT53_29320 PF02650 WhiA C-terminal HTH domain skT53_29320 PF10298 WhiA N-terminal LAGLIDADG-like domain skT53_29330 PF00381 PTS HPr component phosphorylation site skT53_29360 PF07690 Major Facilitator Superfamily skT53_29370 PF04172 LrgB-like family skT53_29380 PF03788 LrgA family skT53_29390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_29390 PF03466 LysR substrate binding domain skT53_29400 PF02743 Cache domain skT53_29400 PF00672 HAMP domain skT53_29400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_29470 PF09383 NIL domain skT53_29470 PF00005 ABC transporter skT53_29480 PF00528 Binding-protein-dependent transport system inner membrane component skT53_29490 PF03180 NLPA lipoprotein skT53_29530 PF03466 LysR substrate binding domain skT53_29530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_29540 PF01323 DSBA-like thioredoxin domain skT53_29550 PF00892 EamA-like transporter family skT53_29560 PF00440 Bacterial regulatory proteins, tetR family skT53_29560 PF13977 BetI-type transcriptional repressor, C-terminal skT53_29570 PF00378 Enoyl-CoA hydratase/isomerase skT53_29580 PF00501 AMP-binding enzyme skT53_29580 PF13193 AMP-binding enzyme C-terminal domain skT53_29600 PF07690 Major Facilitator Superfamily skT53_29610 PF00378 Enoyl-CoA hydratase/isomerase skT53_29620 PF00440 Bacterial regulatory proteins, tetR family skT53_29650 PF00266 Aminotransferase class-V skT53_29660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_29660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_29690 PF11738 Protein of unknown function (DUF3298) skT53_29690 PF13739 Deacetylase PdaC skT53_29690 PF01522 Polysaccharide deacetylase skT53_29710 PF00528 Binding-protein-dependent transport system inner membrane component skT53_29720 PF00005 ABC transporter skT53_29730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_29730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_29750 PF00561 alpha/beta hydrolase fold skT53_29790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family skT53_29790 PF03466 LysR substrate binding domain skT53_29800 PF01645 Conserved region in glutamate synthase skT53_29810 PF02129 X-Pro dipeptidyl-peptidase (S15 family) skT53_29810 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain skT53_29830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_29830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_29830 PF00205 Thiamine pyrophosphate enzyme, central domain skT53_29840 PF02417 Chromate transporter skT53_29850 PF02417 Chromate transporter skT53_29860 PF13188 PAS domain skT53_29860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_29860 PF00512 His Kinase A (phospho-acceptor) domain skT53_29860 PF00989 PAS fold skT53_29860 PF13426 PAS domain skT53_29880 PF13677 Membrane MotB of proton-channel complex MotA/MotB skT53_29880 PF00691 OmpA family skT53_29890 PF01618 MotA/TolQ/ExbB proton channel family skT53_29910 PF00330 Aconitase family (aconitate hydratase) skT53_29910 PF00694 Aconitase C-terminal domain skT53_29920 PF08240 Alcohol dehydrogenase GroES-like domain skT53_29920 PF00107 Zinc-binding dehydrogenase skT53_29940 PF02803 Thiolase, C-terminal domain skT53_29940 PF00108 Thiolase, N-terminal domain skT53_29960 PF04286 Protein of unknown function (DUF445) skT53_30000 PF00392 Bacterial regulatory proteins, gntR family skT53_30000 PF03061 Thioesterase superfamily skT53_30000 PF07085 DRTGG domain skT53_30000 PF00571 CBS domain skT53_30010 PF01336 OB-fold nucleic acid binding domain skT53_30010 PF07733 Bacterial DNA polymerase III alpha NTPase domain skT53_30010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain skT53_30010 PF14579 Helix-hairpin-helix motif skT53_30010 PF02811 PHP domain skT53_30020 PF04608 Phosphatidylglycerophosphatase A skT53_30030 PF00390 Malic enzyme, N-terminal domain skT53_30030 PF03949 Malic enzyme, NAD binding domain skT53_30050 PF01039 Carboxyl transferase domain skT53_30050 PF17848 Acetyl-coA carboxylase zinc finger domain skT53_30060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit skT53_30070 PF00365 Phosphofructokinase skT53_30080 PF02887 Pyruvate kinase, alpha/beta domain skT53_30080 PF00391 PEP-utilising enzyme, mobile domain skT53_30080 PF00224 Pyruvate kinase, barrel domain skT53_30100 PF04186 FxsA cytoplasmic membrane protein skT53_30110 PF00180 Isocitrate/isopropylmalate dehydrogenase skT53_30120 PF00056 lactate/malate dehydrogenase, NAD binding domain skT53_30120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain skT53_30170 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain skT53_30170 PF00476 DNA polymerase family A skT53_30170 PF01367 5'-3' exonuclease, C-terminal SAM fold skT53_30180 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain skT53_30180 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain skT53_30180 PF06827 Zinc finger found in FPG and IleRS skT53_30190 PF02659 Putative manganese efflux pump skT53_30200 PF01121 Dephospho-CoA kinase skT53_30210 PF01464 Transglycosylase SLT domain skT53_30210 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain skT53_30220 PF02954 Bacterial regulatory protein, Fis family skT53_30220 PF00158 Sigma-54 interaction domain skT53_30220 PF00989 PAS fold skT53_30260 PF01546 Peptidase family M20/M25/M40 skT53_30260 PF07687 Peptidase dimerisation domain skT53_30270 PF03606 C4-dicarboxylate anaerobic carrier skT53_30280 PF03606 C4-dicarboxylate anaerobic carrier skT53_30290 PF07690 Major Facilitator Superfamily skT53_30300 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain skT53_30300 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family skT53_30300 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain skT53_30310 PF02595 Glycerate kinase family skT53_30320 PF02652 L-lactate permease skT53_30360 PF13472 GDSL-like Lipase/Acylhydrolase family skT53_30370 PF00005 ABC transporter skT53_30390 PF03717 Penicillin-binding Protein dimerisation domain skT53_30390 PF00905 Penicillin binding protein transpeptidase domain skT53_30400 PF01648 4'-phosphopantetheinyl transferase superfamily skT53_30420 PF00285 Citrate synthase, C-terminal domain skT53_30430 PF01520 N-acetylmuramoyl-L-alanine amidase skT53_30450 PF00571 CBS domain skT53_30480 PF01551 Peptidase family M23 skT53_30510 PF00155 Aminotransferase class I and II skT53_30530 PF03741 Integral membrane protein TerC family skT53_30540 PF00378 Enoyl-CoA hydratase/isomerase skT53_30550 PF02675 S-adenosylmethionine decarboxylase skT53_30560 PF00011 Hsp20/alpha crystallin family skT53_30570 PF01522 Polysaccharide deacetylase skT53_30580 PF00881 Nitroreductase family skT53_30610 PF13115 YtkA-like skT53_30640 PF01380 SIS domain skT53_30650 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family skT53_30660 PF01638 HxlR-like helix-turn-helix skT53_30670 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain skT53_30670 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain skT53_30690 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain skT53_30690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase skT53_30700 PF00342 Phosphoglucose isomerase skT53_30710 PF04199 Putative cyclase skT53_30740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain skT53_30740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) skT53_30740 PF02824 TGS domain skT53_30740 PF03129 Anticodon binding domain skT53_30750 PF02386 Cation transport protein skT53_30760 PF02254 TrkA-N domain skT53_30760 PF02080 TrkA-C domain skT53_30770 PF08032 RNA 2'-O ribose methyltransferase substrate binding skT53_30770 PF00588 SpoU rRNA Methylase family skT53_30790 PF01409 tRNA synthetases class II core domain (F) skT53_30790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain skT53_30800 PF03484 tRNA synthetase B5 domain skT53_30800 PF01588 Putative tRNA binding domain skT53_30800 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain skT53_30800 PF03483 B3/4 domain skT53_30800 PF03147 Ferredoxin-fold anticodon binding domain skT53_30810 PF05164 Cell division protein ZapA skT53_30820 PF02674 Colicin V production protein skT53_30840 PF00488 MutS domain V skT53_30840 PF01713 Smr domain skT53_30850 PF00905 Penicillin binding protein transpeptidase domain skT53_30850 PF00912 Transglycosylase skT53_30860 PF00579 tRNA synthetases class I (W and Y) skT53_30860 PF01479 S4 domain skT53_30870 PF00512 His Kinase A (phospho-acceptor) domain skT53_30870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_30870 PF00989 PAS fold skT53_30900 PF00920 Dehydratase family skT53_30920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase skT53_30920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase skT53_30930 PF01842 ACT domain skT53_30930 PF00742 Homoserine dehydrogenase skT53_30930 PF03447 Homoserine dehydrogenase, NAD binding domain skT53_30940 PF01842 ACT domain skT53_30940 PF01817 Chorismate mutase type II skT53_30940 PF00800 Prephenate dehydratase skT53_30950 PF01063 Amino-transferase class IV skT53_30960 PF00205 Thiamine pyrophosphate enzyme, central domain skT53_30960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_30960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_30970 PF10369 Small subunit of acetolactate synthase skT53_30980 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain skT53_30980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain skT53_30990 PF00682 HMGL-like skT53_30990 PF08502 LeuA allosteric (dimerisation) domain skT53_31000 PF00180 Isocitrate/isopropylmalate dehydrogenase skT53_31020 PF01476 LysM domain skT53_31030 PF02540 NAD synthase skT53_31050 PF07683 Cobalamin synthesis protein cobW C-terminal domain skT53_31050 PF02492 CobW/HypB/UreG, nucleotide-binding domain skT53_31060 PF02075 Crossover junction endodeoxyribonuclease RuvC skT53_31070 PF01330 RuvA N terminal domain skT53_31070 PF07499 RuvA, C-terminal domain skT53_31080 PF17864 RuvB AAA lid domain skT53_31080 PF05496 Holliday junction DNA helicase RuvB P-loop domain skT53_31080 PF05491 RuvB C-terminal winged helix domain skT53_31100 PF04542 Sigma-70 region 2 skT53_31110 PF00942 Cellulose binding domain skT53_31110 PF12791 Anti-sigma factor N-terminus skT53_31120 PF02547 Queuosine biosynthesis protein skT53_31130 PF01702 Queuine tRNA-ribosyltransferase skT53_31140 PF02699 Preprotein translocase subunit skT53_31160 PF04239 Protein of unknown function (DUF421) skT53_31170 PF01943 Polysaccharide biosynthesis protein skT53_31170 PF14667 Polysaccharide biosynthesis C-terminal domain skT53_31190 PF02355 Protein export membrane protein skT53_31200 PF02355 Protein export membrane protein skT53_31210 PF01368 DHH family skT53_31210 PF17768 RecJ OB domain skT53_31210 PF10141 Single-strand DNA-specific exonuclease, C terminal domain skT53_31210 PF02272 DHHA1 domain skT53_31220 PF00156 Phosphoribosyl transferase domain skT53_31230 PF04607 Region found in RelA / SpoT proteins skT53_31230 PF02824 TGS domain skT53_31230 PF13291 ACT domain skT53_31240 PF02580 D-Tyr-tRNA(Tyr) deacylase skT53_31250 PF00465 Iron-containing alcohol dehydrogenase skT53_31300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_31300 PF00672 HAMP domain skT53_31300 PF02743 Cache domain skT53_31320 PF02735 Ku70/Ku80 beta-barrel domain skT53_31350 PF00528 Binding-protein-dependent transport system inner membrane component skT53_31360 PF08402 TOBE domain skT53_31360 PF00005 ABC transporter skT53_31380 PF08671 Anti-repressor SinI skT53_31380 PF01381 Helix-turn-helix skT53_31400 PF02954 Bacterial regulatory protein, Fis family skT53_31400 PF13426 PAS domain skT53_31400 PF00158 Sigma-54 interaction domain skT53_31440 PF00561 alpha/beta hydrolase fold skT53_31450 PF00667 FAD binding domain skT53_31450 PF00258 Flavodoxin skT53_31450 PF00175 Oxidoreductase NAD-binding domain skT53_31460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain skT53_31460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain skT53_31510 PF00437 Type II/IV secretion system protein skT53_31590 PF18496 Collagenase G catalytic helper subdomain skT53_31590 PF01752 Collagenase skT53_31590 PF08453 Peptidase family M9 N-terminal skT53_31610 PF01740 STAS domain skT53_31610 PF00916 Sulfate permease family skT53_31620 PF08240 Alcohol dehydrogenase GroES-like domain skT53_31620 PF00107 Zinc-binding dehydrogenase skT53_31630 PF05199 GMC oxidoreductase skT53_31630 PF00732 GMC oxidoreductase skT53_31640 PF01545 Cation efflux family skT53_31640 PF16916 Dimerisation domain of Zinc Transporter skT53_31670 PF07670 Nucleoside recognition skT53_31670 PF02421 Ferrous iron transport protein B skT53_31670 PF17910 FeoB cytosolic helical domain skT53_31670 PF07664 Ferrous iron transport protein B C terminus skT53_31690 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase skT53_31700 PF01068 ATP dependent DNA ligase domain skT53_31700 PF04675 DNA ligase N terminus skT53_31700 PF04679 ATP dependent DNA ligase C terminal region skT53_31720 PF13193 AMP-binding enzyme C-terminal domain skT53_31720 PF00501 AMP-binding enzyme skT53_31730 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain skT53_31730 PF02777 Iron/manganese superoxide dismutases, C-terminal domain skT53_31740 PF00535 Glycosyl transferase family 2 skT53_31770 PF07987 Domain of unkown function (DUF1775) skT53_31790 PF13185 GAF domain skT53_31790 PF07730 Histidine kinase skT53_31800 PF00072 Response regulator receiver domain skT53_31800 PF00196 Bacterial regulatory proteins, luxR family skT53_31830 PF00899 ThiF family skT53_31850 PF01966 HD domain skT53_31860 PF06961 Protein of unknown function (DUF1294) skT53_31890 PF10057 Uncharacterized conserved protein (DUF2294) skT53_31900 PF13520 Amino acid permease skT53_31920 PF01476 LysM domain skT53_31920 PF08239 Bacterial SH3 domain skT53_31920 PF00877 NlpC/P60 family skT53_31930 PF07724 AAA domain (Cdc48 subfamily) skT53_31930 PF10431 C-terminal, D2-small domain, of ClpB protein skT53_31940 PF00795 Carbon-nitrogen hydrolase skT53_31950 PF02293 AmiS/UreI family transporter skT53_31960 PF02954 Bacterial regulatory protein, Fis family skT53_31960 PF13188 PAS domain skT53_31960 PF00158 Sigma-54 interaction domain skT53_31980 PF02653 Branched-chain amino acid transport system / permease component skT53_32000 PF12399 Branched-chain amino acid ATP-binding cassette transporter skT53_32000 PF00005 ABC transporter skT53_32010 PF00005 ABC transporter skT53_32020 PF01614 Bacterial transcriptional regulator skT53_32020 PF09339 IclR helix-turn-helix domain skT53_32030 PF02634 FdhD/NarQ family skT53_32040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain skT53_32040 PF01568 Molydopterin dinucleotide binding domain skT53_32040 PF00384 Molybdopterin oxidoreductase skT53_32060 PF00132 Bacterial transferase hexapeptide (six repeats) skT53_32080 PF03773 Predicted permease skT53_32100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) skT53_32100 PF00355 Rieske [2Fe-2S] domain skT53_32110 PF00866 Ring hydroxylating beta subunit skT53_32120 PF01494 FAD binding domain skT53_32140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_32140 PF00205 Thiamine pyrophosphate enzyme, central domain skT53_32140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_32150 PF00171 Aldehyde dehydrogenase family skT53_32190 PF13193 AMP-binding enzyme C-terminal domain skT53_32190 PF00501 AMP-binding enzyme skT53_32200 PF12833 Helix-turn-helix domain skT53_32200 PF02311 AraC-like ligand binding domain skT53_32210 PF02625 XdhC and CoxI family skT53_32210 PF13478 XdhC Rossmann domain skT53_32220 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase skT53_32220 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain skT53_32240 PF00941 FAD binding domain in molybdopterin dehydrogenase skT53_32240 PF03450 CO dehydrogenase flavoprotein C-terminal domain skT53_32250 PF01799 [2Fe-2S] binding domain skT53_32250 PF00111 2Fe-2S iron-sulfur cluster binding domain skT53_32260 PF13193 AMP-binding enzyme C-terminal domain skT53_32260 PF00501 AMP-binding enzyme skT53_32270 PF00378 Enoyl-CoA hydratase/isomerase skT53_32280 PF00083 Sugar (and other) transporter skT53_32290 PF02441 Flavoprotein skT53_32300 PF00171 Aldehyde dehydrogenase family skT53_32310 PF00465 Iron-containing alcohol dehydrogenase skT53_32330 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase skT53_32340 PF00149 Calcineurin-like phosphoesterase skT53_32340 PF12320 Type 5 capsule protein repressor C-terminal domain skT53_32360 PF12320 Type 5 capsule protein repressor C-terminal domain skT53_32360 PF00149 Calcineurin-like phosphoesterase skT53_32370 PF13476 AAA domain skT53_32480 PF00753 Metallo-beta-lactamase superfamily skT53_32480 PF16123 Hydroxyacylglutathione hydrolase C-terminus skT53_32490 PF13344 Haloacid dehalogenase-like hydrolase skT53_32500 PF03477 ATP cone domain skT53_32510 PF00317 Ribonucleotide reductase, all-alpha domain skT53_32510 PF03477 ATP cone domain skT53_32510 PF02867 Ribonucleotide reductase, barrel domain skT53_32520 PF00512 His Kinase A (phospho-acceptor) domain skT53_32520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_32520 PF08448 PAS fold skT53_32520 PF13188 PAS domain skT53_32520 PF00072 Response regulator receiver domain skT53_32530 PF00072 Response regulator receiver domain skT53_32530 PF02954 Bacterial regulatory protein, Fis family skT53_32530 PF00158 Sigma-54 interaction domain skT53_32540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III skT53_32560 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_32560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain skT53_32590 PF02583 Metal-sensitive transcriptional repressor skT53_32600 PF01209 ubiE/COQ5 methyltransferase family skT53_32630 PF00581 Rhodanese-like domain skT53_32640 PF13686 DsrE/DsrF/DrsH-like family skT53_32650 PF01925 Sulfite exporter TauE/SafE skT53_32660 PF01206 Sulfurtransferase TusA skT53_32670 PF00753 Metallo-beta-lactamase superfamily skT53_32670 PF00581 Rhodanese-like domain skT53_32680 PF01206 Sulfurtransferase TusA skT53_32700 PF02583 Metal-sensitive transcriptional repressor skT53_32740 PF00704 Glycosyl hydrolases family 18 skT53_32740 PF01476 LysM domain skT53_32750 PF00578 AhpC/TSA family skT53_32770 PF00486 Transcriptional regulatory protein, C terminal skT53_32770 PF00072 Response regulator receiver domain skT53_32780 PF00512 His Kinase A (phospho-acceptor) domain skT53_32780 PF18698 Histidine kinase sensor domain skT53_32780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_32780 PF00672 HAMP domain skT53_32780 PF00989 PAS fold skT53_32790 PF02683 Cytochrome C biogenesis protein transmembrane region skT53_32800 PF00578 AhpC/TSA family skT53_32820 PF02915 Rubrerythrin skT53_32840 PF00364 Biotin-requiring enzyme skT53_32840 PF00561 alpha/beta hydrolase fold skT53_32870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain skT53_32870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain skT53_32880 PF00083 Sugar (and other) transporter skT53_32900 PF02525 Flavodoxin-like fold skT53_32910 PF10372 Bacterial membrane-spanning protein N-terminus skT53_32910 PF02457 DisA bacterial checkpoint controller nucleotide-binding skT53_32920 PF01476 LysM domain skT53_32920 PF00704 Glycosyl hydrolases family 18 skT53_32960 PF05726 Pirin C-terminal cupin domain skT53_32960 PF02678 Pirin skT53_32970 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_32980 PF12323 Helix-turn-helix domain skT53_32980 PF01385 Probable transposase skT53_32980 PF07282 Putative transposase DNA-binding domain skT53_32990 PF09335 SNARE associated Golgi protein skT53_33030 PF00005 ABC transporter skT53_33040 PF03649 Uncharacterised protein family (UPF0014) skT53_33050 PF00106 short chain dehydrogenase skT53_33060 PF09383 NIL domain skT53_33060 PF00005 ABC transporter skT53_33070 PF02653 Branched-chain amino acid transport system / permease component skT53_33100 PF08757 CotH kinase protein skT53_33110 PF02040 Arsenical pump membrane protein skT53_33150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family skT53_33160 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 skT53_33160 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) skT53_33170 PF02743 Cache domain skT53_33170 PF00672 HAMP domain skT53_33170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_33190 PF00873 AcrB/AcrD/AcrF family skT53_33200 PF02583 Metal-sensitive transcriptional repressor skT53_33210 PF02557 D-alanyl-D-alanine carboxypeptidase skT53_33230 PF04012 PspA/IM30 family skT53_33300 PF00313 'Cold-shock' DNA-binding domain skT53_33310 PF09335 SNARE associated Golgi protein skT53_33320 PF07731 Multicopper oxidase skT53_33320 PF07732 Multicopper oxidase skT53_33320 PF10518 TAT (twin-arginine translocation) pathway signal sequence skT53_33320 PF00394 Multicopper oxidase skT53_33330 PF00072 Response regulator receiver domain skT53_33330 PF00486 Transcriptional regulatory protein, C terminal skT53_33340 PF00989 PAS fold skT53_33340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_33340 PF00512 His Kinase A (phospho-acceptor) domain skT53_33340 PF16736 Single Cache-like skT53_33370 PF00578 AhpC/TSA family skT53_33390 PF00394 Multicopper oxidase skT53_33390 PF07731 Multicopper oxidase skT53_33390 PF07732 Multicopper oxidase skT53_33400 PF00486 Transcriptional regulatory protein, C terminal skT53_33400 PF00072 Response regulator receiver domain skT53_33410 PF00672 HAMP domain skT53_33410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_33410 PF00512 His Kinase A (phospho-acceptor) domain skT53_33410 PF18698 Histidine kinase sensor domain skT53_33410 PF00989 PAS fold skT53_33440 PF08241 Methyltransferase domain skT53_33450 PF00403 Heavy-metal-associated domain skT53_33460 PF02583 Metal-sensitive transcriptional repressor skT53_33470 PF00403 Heavy-metal-associated domain skT53_33480 PF00403 Heavy-metal-associated domain skT53_33490 PF01476 LysM domain skT53_33490 PF00877 NlpC/P60 family skT53_33490 PF08239 Bacterial SH3 domain skT53_33500 PF02683 Cytochrome C biogenesis protein transmembrane region skT53_33510 PF01790 Prolipoprotein diacylglyceryl transferase skT53_33540 PF02630 SCO1/SenC skT53_33550 PF13115 YtkA-like skT53_33580 PF07282 Putative transposase DNA-binding domain skT53_33580 PF12323 Helix-turn-helix domain skT53_33580 PF01385 Probable transposase skT53_33590 PF02416 mttA/Hcf106 family skT53_33600 PF00690 Cation transporter/ATPase, N-terminus skT53_33600 PF00689 Cation transporting ATPase, C-terminus skT53_33620 PF00689 Cation transporting ATPase, C-terminus skT53_33620 PF00690 Cation transporter/ATPase, N-terminus skT53_33630 PF00689 Cation transporting ATPase, C-terminus skT53_33630 PF00690 Cation transporter/ATPase, N-terminus skT53_33640 PF07690 Major Facilitator Superfamily skT53_33690 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase skT53_33700 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase skT53_33710 PF02441 Flavoprotein skT53_33740 PF00171 Aldehyde dehydrogenase family skT53_33760 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation skT53_33760 PF01118 Semialdehyde dehydrogenase, NAD binding domain skT53_33770 PF07836 DmpG-like communication domain skT53_33770 PF00682 HMGL-like skT53_33790 PF01361 Tautomerase enzyme skT53_33820 PF04172 LrgB-like family skT53_33830 PF04172 LrgB-like family skT53_33860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain skT53_33860 PF08447 PAS fold skT53_33860 PF13426 PAS domain skT53_33880 PF01614 Bacterial transcriptional regulator skT53_33880 PF09339 IclR helix-turn-helix domain skT53_33890 PF00355 Rieske [2Fe-2S] domain skT53_33900 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain skT53_33900 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain skT53_33910 PF13411 MerR HTH family regulatory protein skT53_33930 PF03600 Citrate transporter skT53_33940 PF13386 Cytochrome C biogenesis protein transmembrane region skT53_33960 PF00109 Beta-ketoacyl synthase, N-terminal domain skT53_33960 PF02801 Beta-ketoacyl synthase, C-terminal domain skT53_33970 PF00501 AMP-binding enzyme skT53_33970 PF13193 AMP-binding enzyme C-terminal domain skT53_33980 PF01593 Flavin containing amine oxidoreductase skT53_33990 PF01327 Polypeptide deformylase skT53_34010 PF00557 Metallopeptidase family M24 skT53_34040 PF02082 Transcriptional regulator skT53_34050 PF08645 Polynucleotide kinase 3 phosphatase skT53_34060 PF10415 Fumarase C C-terminus skT53_34060 PF00206 Lyase skT53_34090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD skT53_34120 PF00378 Enoyl-CoA hydratase/isomerase skT53_34160 PF00664 ABC transporter transmembrane region skT53_34160 PF00005 ABC transporter skT53_34170 PF00174 Oxidoreductase molybdopterin binding domain skT53_34180 PF00107 Zinc-binding dehydrogenase skT53_34180 PF08240 Alcohol dehydrogenase GroES-like domain skT53_34190 PF00465 Iron-containing alcohol dehydrogenase skT53_34200 PF00989 PAS fold skT53_34200 PF00512 His Kinase A (phospho-acceptor) domain skT53_34200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_34200 PF13426 PAS domain skT53_34200 PF13188 PAS domain skT53_34210 PF02954 Bacterial regulatory protein, Fis family skT53_34210 PF00072 Response regulator receiver domain skT53_34210 PF00158 Sigma-54 interaction domain skT53_34230 PF00579 tRNA synthetases class I (W and Y) skT53_34240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain skT53_34240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain skT53_34260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases skT53_34270 PF01384 Phosphate transporter family skT53_34280 PF01507 Phosphoadenosine phosphosulfate reductase family skT53_34290 PF01747 ATP-sulfurylase skT53_34290 PF14306 PUA-like domain skT53_34310 PF00266 Aminotransferase class-V skT53_34320 PF00581 Rhodanese-like domain skT53_34330 PF01497 Periplasmic binding protein skT53_34350 PF00719 Inorganic pyrophosphatase skT53_34360 PF13193 AMP-binding enzyme C-terminal domain skT53_34360 PF00501 AMP-binding enzyme skT53_34370 PF01544 CorA-like Mg2+ transporter protein skT53_34390 PF04341 Protein of unknown function, DUF485 skT53_34400 PF00474 Sodium:solute symporter family skT53_34410 PF01541 GIY-YIG catalytic domain skT53_34420 PF01699 Sodium/calcium exchanger protein skT53_34430 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_34440 PF01464 Transglycosylase SLT domain skT53_34460 PF01475 Ferric uptake regulator family skT53_34480 PF07690 Major Facilitator Superfamily skT53_34490 PF07690 Major Facilitator Superfamily skT53_34510 PF05067 Manganese containing catalase skT53_34520 PF12652 CotJB protein skT53_34530 PF11007 Spore coat associated protein JA (CotJA) skT53_34540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain skT53_34540 PF00205 Thiamine pyrophosphate enzyme, central domain skT53_34540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain skT53_34550 PF02491 SHS2 domain inserted in FTSA skT53_34560 PF00291 Pyridoxal-phosphate dependent enzyme skT53_34560 PF13291 ACT domain skT53_34570 PF00155 Aminotransferase class I and II skT53_34580 PF01817 Chorismate mutase type II skT53_34580 PF00793 DAHP synthetase I family skT53_34610 PF07486 Cell Wall Hydrolase skT53_34660 PF00115 Cytochrome C and Quinol oxidase polypeptide I skT53_34670 PF00850 Histone deacetylase domain skT53_34680 PF00571 CBS domain skT53_34690 PF00583 Acetyltransferase (GNAT) family skT53_34700 PF00501 AMP-binding enzyme skT53_34700 PF13193 AMP-binding enzyme C-terminal domain skT53_34710 PF07875 Coat F domain skT53_34720 PF07875 Coat F domain skT53_34750 PF03845 Spore germination protein skT53_34760 PF00892 EamA-like transporter family skT53_34780 PF00202 Aminotransferase class-III skT53_34810 PF02574 Homocysteine S-methyltransferase skT53_34810 PF02219 Methylenetetrahydrofolate reductase skT53_34830 PF00155 Aminotransferase class I and II skT53_34840 PF01037 Lrp/AsnC ligand binding domain skT53_34850 PF01569 PAP2 superfamily skT53_34860 PF02151 UvrB/uvrC motif skT53_34860 PF08459 UvrC Helix-hairpin-helix N-terminal skT53_34860 PF01541 GIY-YIG catalytic domain skT53_34880 PF00696 Amino acid kinase family skT53_34880 PF01842 ACT domain skT53_34880 PF13840 ACT domain skT53_34900 PF01741 Large-conductance mechanosensitive channel, MscL skT53_34910 PF00561 alpha/beta hydrolase fold skT53_34920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit skT53_34930 PF02910 Fumarate reductase flavoprotein C-term skT53_34930 PF00890 FAD binding domain skT53_34940 PF13085 2Fe-2S iron-sulfur cluster binding domain skT53_34940 PF13183 4Fe-4S dicluster domain skT53_34950 PF00196 Bacterial regulatory proteins, luxR family skT53_34960 PF01177 Asp/Glu/Hydantoin racemase skT53_34980 PF03725 3' exoribonuclease family, domain 2 skT53_34980 PF01138 3' exoribonuclease family, domain 1 skT53_34990 PF01725 Ham1 family skT53_35000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase skT53_35000 PF05697 Bacterial trigger factor protein (TF) skT53_35000 PF05698 Bacterial trigger factor protein (TF) C-terminus skT53_35010 PF00574 Clp protease skT53_35020 PF07724 AAA domain (Cdc48 subfamily) skT53_35020 PF10431 C-terminal, D2-small domain, of ClpB protein skT53_35020 PF06689 ClpX C4-type zinc finger skT53_35030 PF00004 ATPase family associated with various cellular activities (AAA) skT53_35030 PF05362 Lon protease (S16) C-terminal proteolytic domain skT53_35040 PF00004 ATPase family associated with various cellular activities (AAA) skT53_35040 PF05362 Lon protease (S16) C-terminal proteolytic domain skT53_35040 PF02190 ATP-dependent protease La (LON) substrate-binding domain skT53_35050 PF01926 50S ribosome-binding GTPase skT53_35080 PF00892 EamA-like transporter family skT53_35090 PF00528 Binding-protein-dependent transport system inner membrane component skT53_35100 PF00005 ABC transporter skT53_35120 PF04545 Sigma-70, region 4 skT53_35120 PF04542 Sigma-70 region 2 skT53_35130 PF04545 Sigma-70, region 4 skT53_35130 PF04542 Sigma-70 region 2 skT53_35140 PF02322 Cytochrome bd terminal oxidase subunit II skT53_35150 PF01654 Cytochrome bd terminal oxidase subunit I skT53_35160 PF05257 CHAP domain skT53_35160 PF01476 LysM domain skT53_35170 PF00704 Glycosyl hydrolases family 18 skT53_35170 PF01476 LysM domain skT53_35190 PF01557 Fumarylacetoacetate (FAA) hydrolase family skT53_35200 PF00392 Bacterial regulatory proteins, gntR family skT53_35200 PF07729 FCD domain skT53_35210 PF12697 Alpha/beta hydrolase family skT53_35220 PF01979 Amidohydrolase family skT53_35250 PF08447 PAS fold skT53_35250 PF00512 His Kinase A (phospho-acceptor) domain skT53_35250 PF00989 PAS fold skT53_35250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_35260 PF00296 Luciferase-like monooxygenase skT53_35270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family skT53_35280 PF02146 Sir2 family skT53_35290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain skT53_35290 PF02770 Acyl-CoA dehydrogenase, middle domain skT53_35290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain skT53_35300 PF07729 FCD domain skT53_35300 PF00392 Bacterial regulatory proteins, gntR family skT53_35310 PF02515 CoA-transferase family III skT53_35320 PF00682 HMGL-like skT53_35330 PF07690 Major Facilitator Superfamily skT53_35340 PF00465 Iron-containing alcohol dehydrogenase skT53_35360 PF00171 Aldehyde dehydrogenase family skT53_35370 PF00268 Ribonucleotide reductase, small chain skT53_35380 PF00196 Bacterial regulatory proteins, luxR family skT53_35400 PF01926 50S ribosome-binding GTPase skT53_35420 PF01488 Shikimate / quinate 5-dehydrogenase skT53_35420 PF08501 Shikimate dehydrogenase substrate binding domain skT53_35420 PF18317 Shikimate 5'-dehydrogenase C-terminal domain skT53_35430 PF01985 CRS1 / YhbY (CRM) domain skT53_35440 PF01467 Cytidylyltransferase-like skT53_35450 PF01966 HD domain skT53_35470 PF13649 Methyltransferase domain skT53_35480 PF07685 CobB/CobQ-like glutamine amidotransferase domain skT53_35480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain skT53_35490 PF01923 Cobalamin adenosyltransferase skT53_35500 PF01476 LysM domain skT53_35500 PF00704 Glycosyl hydrolases family 18 skT53_35510 PF00106 short chain dehydrogenase skT53_35520 PF13603 Leucyl-tRNA synthetase, Domain 2 skT53_35520 PF00133 tRNA synthetases class I (I, L, M and V) skT53_35520 PF08264 Anticodon-binding domain of tRNA skT53_35580 PF18698 Histidine kinase sensor domain skT53_35580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase skT53_35580 PF00512 His Kinase A (phospho-acceptor) domain skT53_35580 PF00672 HAMP domain skT53_35600 PF01820 D-ala D-ala ligase N-terminus skT53_35600 PF07478 D-ala D-ala ligase C-terminus skT53_35610 PF01325 Iron dependent repressor, N-terminal DNA binding domain skT53_35610 PF02742 Iron dependent repressor, metal binding and dimerisation domain skT53_35620 PF01521 Iron-sulphur cluster biosynthesis skT53_35640 PF00578 AhpC/TSA family skT53_35640 PF10417 C-terminal domain of 1-Cys peroxiredoxin skT53_35650 PF00578 AhpC/TSA family skT53_35660 PF10531 SLBB domain skT53_35670 PF01053 Cys/Met metabolism PLP-dependent enzyme skT53_35680 PF13567 Domain of unknown function (DUF4131) skT53_35680 PF00753 Metallo-beta-lactamase superfamily skT53_35680 PF03772 Competence protein skT53_35730 PF12323 Helix-turn-helix domain skT53_35730 PF01385 Probable transposase skT53_35730 PF07282 Putative transposase DNA-binding domain skT53_35740 PF00753 Metallo-beta-lactamase superfamily skT53_35770 PF07992 Pyridine nucleotide-disulphide oxidoreductase skT53_35780 PF06144 DNA polymerase III, delta subunit skT53_35800 PF01649 Ribosomal protein S20 skT53_35810 PF03418 Germination protease skT53_35820 PF07454 Stage II sporulation protein P (SpoIIP) skT53_35840 PF00679 Elongation factor G C-terminus skT53_35840 PF03144 Elongation factor Tu domain 2 skT53_35840 PF06421 GTP-binding protein LepA C-terminus skT53_35840 PF00009 Elongation factor Tu GTP binding domain skT53_35870 PF06969 HemN C-terminal domain skT53_35870 PF04055 Radical SAM superfamily skT53_35880 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding skT53_35880 PF01628 HrcA protein C terminal domain skT53_35890 PF01025 GrpE skT53_35900 PF00012 Hsp70 protein skT53_35910 PF00684 DnaJ central domain skT53_35910 PF01556 DnaJ C terminal domain skT53_35910 PF00226 DnaJ domain skT53_35920 PF01695 IstB-like ATP binding protein skT53_35960 PF13276 HTH-like domain skT53_35960 PF13333 Integrase core domain skT53_35960 PF00665 Integrase core domain skT53_35970 PF00563 EAL domain skT53_35970 PF00990 Diguanylate cyclase, GGDEF domain skT53_35970 PF03707 Bacterial signalling protein N terminal repeat