LOCUS V00606 6407 bp DNA circular PHG 18-APR-2005 DEFINITION Genome of bacteriophage f1 (closely related to phages fd and m13). ACCESSION V00606 J02449 M10881 VERSION V00606.1 KEYWORDS circular; coat protein; genome; origin of replication. SOURCE Enterobacteria phage f1 ORGANISM Enterobacteria phage f1 Viruses; ssDNA viruses; Inoviridae; Inovirus. REFERENCE 1 (bases 1 to 6407) AUTHORS Beck,E. and Zink,B. TITLE Nucleotide sequence and genome organisation of filamentous bacteriophages fl and fd JOURNAL Gene 16 (1-3), 35-58 (1981) PUBMED 6282703 REFERENCE 2 (bases 5490 to 5852) AUTHORS La Farina,M. and Vitale,M. TITLE Rho-dependence of the terminator active at the end of the I region of transcription of bacteriophage f1 JOURNAL Mol. Gen. Genet. 195 (1-2), 5-9 (1984) PUBMED 6092864 FEATURES Location/Qualifiers source 1..6407 /organism="Enterobacteria phage f1" /mol_type="genomic DNA" /db_xref="taxon:10863" gene order(6006..6407,1..831) /gene="II" CDS join(6006..6407,1..831) /gene="II" /codon_start=1 /transl_table=11 /protein_id="CAA23876.1" /db_xref="GOA:P69546" /db_xref="InterPro:IPR006516" /db_xref="InterPro:IPR022686" /db_xref="InterPro:IPR022688" /db_xref="UniProtKB/Swiss-Prot:P69546" /translation="MIDMLVLRLPFIDSLVCSRLSGNDLIAFVDLSKIATLSGMNLSA RTVEYHIDGDLTVSGLSHPFESLPTHYSGIAFKIYEGSKNFYPCVEIKASPAKVLQGH NVFGTTDLALCSEALLLNFANSLPCLYDLLDVNATTISRIDATFSARAPNENIAKQVI DHLRNVSNGQTKSTRSQNWESTVTWNETSRHRTLVAYLKHVELQHQIQQLSSKPSAKM TSYQKEQLKVLSNPDLLEFASGLVRFEARIETRYLKSFGLPLNLFDAIRFASDYNSQG KDLIFDLWSFSFSELFKAFEGDSMNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYF GFYRRLVNEGYDSVALTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINV DFSSQRPDWYNEPVLKIA" CDS 496..831 /gene="II" /note="unnamed protein product; gene X" /codon_start=1 /transl_table=11 /protein_id="CAA23867.1" /db_xref="GOA:P69546" /db_xref="InterPro:IPR006516" /db_xref="InterPro:IPR022686" /db_xref="InterPro:IPR022688" /db_xref="UniProtKB/Swiss-Prot:P69546" /translation="MNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNE GYDSVALTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRPDW YNEPVLKIA" CDS 843..1106 /note="unnamed protein product; gene V" /codon_start=1 /transl_table=11 /protein_id="CAA23868.1" /db_xref="GOA:P69543" /db_xref="InterPro:IPR003512" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR016027" /db_xref="PDB:1AE2" /db_xref="PDB:1AE3" /db_xref="PDB:1GKH" /db_xref="PDB:1GPV" /db_xref="PDB:1GVP" /db_xref="PDB:1VQA" /db_xref="PDB:1VQB" /db_xref="PDB:1VQC" /db_xref="PDB:1VQD" /db_xref="PDB:1VQE" /db_xref="PDB:1VQF" /db_xref="PDB:1VQG" /db_xref="PDB:1VQH" /db_xref="PDB:1VQI" /db_xref="PDB:1VQJ" /db_xref="PDB:1YHA" /db_xref="PDB:1YHB" /db_xref="UniProtKB/Swiss-Prot:P69543" /translation="MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVL VKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK" CDS 1108..1209 /note="unnamed protein product; gene VII" /codon_start=1 /transl_table=11 /protein_id="CAA23869.1" /db_xref="GOA:P69534" /db_xref="UniProtKB/Swiss-Prot:P69534" /translation="MEQVADFDTIYQAMIQISVVLCFALGIIAGGQR" CDS 1206..1304 /note="unnamed protein product; gene IX" /codon_start=1 /transl_table=11 /protein_id="CAA23870.1" /db_xref="GOA:P69537" /db_xref="UniProtKB/Swiss-Prot:P69537" /translation="MSVLVYSFASFVLGWCLRSGITYFTRLMETSS" CDS 1301..1522 /note="unnamed protein product; gene VIII" /codon_start=1 /transl_table=11 /protein_id="CAA23871.1" /db_xref="GOA:P69540" /db_xref="InterPro:IPR008033" /db_xref="UniProtKB/Swiss-Prot:P69540" /translation="MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFDSLQASATEY IGYAWAMVVVIVGATIGIKLFKKFTSKAS" CDS 1579..2853 /note="unnamed protein product; gene III; valine start" /codon_start=1 /transl_table=11 /protein_id="CAA23872.1" /db_xref="GOA:P69169" /db_xref="InterPro:IPR008021" /db_xref="InterPro:IPR013834" /db_xref="InterPro:IPR016079" /db_xref="UniProtKB/Swiss-Prot:P69169" /translation="MKKLLFAIPLVVPFYSHSAETVESCLAKPHTENSFTNVWKDDKT LDRYANYEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGSEG GGTKPPEYGDTPIPGYTYINPLDGTYPPGTEQNPANPNPSLEESQPLNTFMFQNNRFR NRQGALTVYTGTVTQGTDPVKTYYQYTPVSSKAMYDAYWNGKFRDCAFHSGFNEDPFV CEYQGQSSDLPQPPVNAGGGSGGGSGGGSEGGGSEGGGSEGGGSEGGGSGGGSGSGDF DYENMANANKGAMTENADENALQSDAKGKLDSVATDYGAAIDGFIGDVSGLANGNGAT GDFAGSNSQMAQVGDGDNSPLMNNFRQYLPSLPQSVECRPFVFRAGKPYEFSIDCDKI NLFRGVFAFLLYVATFMYVFSTFANILRNKES" CDS 2856..3194 /note="unnamed protein product; gene VI" /codon_start=1 /transl_table=11 /protein_id="CAA23873.1" /db_xref="GOA:P69531" /db_xref="UniProtKB/Swiss-Prot:P69531" /translation="MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFL ALIIGLNSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDVKQ KIVSYLDWDK" CDS 3196..4242 /note="unnamed protein product; gene I" /codon_start=1 /transl_table=11 /protein_id="CAA23874.1" /db_xref="GOA:P03657" /db_xref="InterPro:IPR008900" /db_xref="UniProtKB/Swiss-Prot:P03657" /translation="MAVYFVTGKLGSGKTLVSVGKIQDKIVAGCKIATNLDLRLQNLP QVGRFAKTPRVLRIPDKPSISDLLAIGRGNDSYDENKNGLLVLDECGTWFNTRSWNDK ERQPIIDWFLHARKLGWDIIFLVQDLSIVDKQARSALAENVVYCRRLDRITLPFVGTL YSLITGSKMPLPKLHVGVVKYGDSQLSPTVERWLYTGKNLYNAYDTKQAFSSNYDSGV YSYLTPYLSHGRYFKPLNLGQKMKLTKIYLKKFSRVLCLAIGFASAFTYSYITQPKPE VKKVVSQTYDFDKFTIDSSQRLNLSYRYVFKDSKGKLINSDDLQKQGYSLTYIDLCTV SIKKGNSNEIVKCN" CDS 4220..5500 /note="unnamed protein product; gene IV" /codon_start=1 /transl_table=11 /protein_id="CAA23875.1" /db_xref="GOA:P03666" /db_xref="InterPro:IPR001775" /db_xref="InterPro:IPR001814" /db_xref="InterPro:IPR004845" /db_xref="InterPro:IPR004846" /db_xref="UniProtKB/Swiss-Prot:P03666" /translation="MKLLNVINFVFLMFVSSSSFAQVIEMNNSSLRDFVTWYSKQTGE SVIVSPDVKGTVTVYSSDVKPENLRDFFISVLRANNFDMVGSIPSIIQKYNPNNQDYI DELPSSDNQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVELFVKSNTSKS SNVLSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDALDFSFA AGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLGLSVRALKTNSHSKILSVPRIL TLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIV LDITSKADSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFL SKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL" ORIGIN 1 aacgctacta ctattagtag aattgatgcc accttttcag ctcgcgcccc aaatgaaaat 61 atagctaaac aggttattga ccatttgcga aatgtatcta atggtcaaac taaatctact 121 cgttcgcaga attgggaatc aactgttaca tggaatgaaa cttccagaca ccgtacttta 181 gttgcatatt taaaacatgt tgagctacag caccagatcc agcaattaag ctctaagcca 241 tccgcaaaaa tgacctctta tcaaaaggag caattaaagg tactctctaa tcctgacctg 301 ttggagtttg cttccggtct ggttcgcttt gaagctcgaa ttgaaacgcg atatttgaag 361 tctttcgggc ttcctcttaa tctttttgat gcaatccgct ttgcttctga ctataatagt 421 cagggtaaag acctgatttt tgatttatgg tcattctcgt tttctgaact gtttaaagca 481 tttgaggggg attcaatgaa tatttatgac gattccgcag tattggacgc tatccagtct 541 aaacatttta ctattacccc ctctggcaaa acttcttttg caaaagcctc tcgctatttt 601 ggtttttatc gtcgtctggt aaacgagggt tatgatagtg ttgctcttac tatgcctcgt 661 aattcctttt ggcgttatgt atctgcatta gttgaatgtg gtattcctaa atctcaactg 721 atgaatcttt ctacctgtaa taatgttgtt ccgttagttc gttttattaa cgtagatttt 781 tcttcccaac gtcctgactg gtataatgag ccagttctta aaatcgcata aggtaattca 841 caatgattaa agttgaaatt aaaccatctc aagcgcaatt cactacccgt tctggtgttt 901 ctcgtcaggg caagccttat tcactgaatg agcagctttg ttacgttgat ttgggtaatg 961 aatatccggt gcttgtcaag attactcttg atgaaggtca gccagcctat gcgcctggtc 1021 tgtacaccgt tcatctgtcc tcgttcaaag ttggtcagtt cggttccctt atgattgacc 1081 gtctgcgcct cgttccggct aagtaacatg gagcaggtcg cggatttcga cacaatttat 1141 caggcgatga tacaaatctc cgttgtactt tgtttcgcgc ttggtataat cgctgggggt 1201 caaagatgag tgttttagtg tattctttcg cctctttcgt tttaggttgg tgccttcgta 1261 gtggcattac gtattttacc cgtttaatgg aaacttcctc atgaaaaagt ctttagtcct 1321 caaagcctct gtagccgttg ctaccctcgt tccgatgctg tctttcgctg ctgagggtga 1381 cgatcccgca aaagcggcct ttgactccct gcaagcctca gcgaccgaat atatcggtta 1441 tgcgtgggcg atggttgttg tcattgtcgg cgcaactatc ggtatcaagc tgtttaagaa 1501 attcacctcg aaagcaagct gataaaccga tacaattaaa ggctcctttt ggagcctttt 1561 tttttggaga ttttcaacgt gaaaaaatta ttattcgcaa ttcctttagt tgttcctttc 1621 tattctcact ccgctgaaac tgttgaaagt tgtttagcaa aaccccatac agaaaattca 1681 tttactaatg tctggaaaga cgacaaaact ttagatcgtt acgctaacta tgagggctgt 1741 ctgtggaatg ctacaggcgt tgtagtttgt actggtgacg aaactcagtg ttacggtaca 1801 tgggttccta ttgggcttgc tatccctgaa aatgagggtg gtggctctga gggtggcggt 1861 tctgagggtg gcggctctga gggtggcggt actaaacctc ctgagtacgg tgatacacct 1921 attccgggtt atacttatat caaccctctc gacggcactt atccgcctgg tactgagcaa 1981 aaccccgcta atcctaatcc ttctcttgag gagtctcagc ctcttaatac tttcatgttt 2041 cagaataata ggttccgaaa taggcagggg gcattaactg tttatacggg cactgttact 2101 caaggcactg accccgttaa aacttattac cagtacactc ctgtatcatc aaaagccatg 2161 tatgacgctt actggaacgg taaattcaga gactgcgctt tccattctgg ctttaatgag 2221 gatccattcg tttgtgaata tcaaggccaa tcgtctgacc tgcctcaacc tcctgttaat 2281 gctggcggcg gctctggtgg tggttctggt ggcggctctg agggtggtgg ctctgagggt 2341 ggcggttctg agggtggcgg ctctgagggt ggcggttccg gtggcggctc cggttccggt 2401 gattttgatt atgaaaatat ggcaaacgct aataaggggg ctatgaccga aaatgccgat 2461 gaaaacgcgc tacagtctga cgctaaaggc aaacttgatt ctgtcgctac tgattacggt 2521 gctgctatcg acggtttcat tggtgacgtt tccggccttg ctaatggtaa tggtgctact 2581 ggtgattttg ctggctctaa ttcccaaatg gctcaagtcg gtgacggtga taattcacct 2641 ttaatgaata atttccgtca atatttacct tcccttcctc aatcggttga atgtcgccct 2701 tttgtctttc gcgctggtaa accatatgaa ttttctattg attgtgacaa aataaactta 2761 ttccgtggtg tctttgcgtt tcttttatat gttgccacct ttatgtatgt attttcgacg 2821 tttgctaaca tactgcgtaa taaggagtct taatcatgcc agttcttttg ggtattccgt 2881 tattattgcg tttcctcggt ttccttctgg taactttgtt cggctatctg ctaacttttc 2941 ttaaaaaggg cttcggtaag atagctattg ctatttcatt gtttcttgct cttattattg 3001 ggcttaactc aattcttgtg ggttatctct ctgatattag cgctcaatta ccctctgact 3061 ttgttcaggg cgttcagtta attctcccgt ctaatgcgct tccctgtttt tatgttattc 3121 tctctgtaaa ggctgctatt ttcatttttg acgttaaaca aaaaatcgtt tcttatttgg 3181 attgggataa ataatatggc tgtttatttt gtaactggca aattaggctc tggaaagacg 3241 ctcgttagcg ttggtaagat tcaggataaa attgtagctg ggtgcaaaat agcaactaat 3301 cttgatttaa ggcttcaaaa cctcccgcaa gtcgggaggt tcgctaaaac gcctcgcgtt 3361 cttagaatac cggataagcc ttctatatct gatttgcttg ctattgggcg cggtaatgat 3421 tcctacgatg aaaataaaaa cggcttgctt gttctcgatg agtgcggtac ttggtttaat 3481 acccgttctt ggaatgataa ggaaagacag ccgattattg attggtttct acatgctcgt 3541 aaattaggat gggatattat ttttcttgtt caggacttat ctattgttga taaacaggcg 3601 cgttctgcat tagctgaaaa tgttgtttat tgtcgtcgtc tggacagaat tactttgcct 3661 tttgtcggta ctttatattc tcttattact ggctcgaaaa tgcctctgcc taaattacat 3721 gttggcgttg ttaaatatgg cgattctcaa ttaagcccta ctgttgagcg ttggctttat 3781 actggtaaga atttgtataa cgcatatgat actaaacagg ctttttccag taattatgat 3841 tccggtgttt attcttattt aacgccttat ttatcacacg gtcggtattt caaaccatta 3901 aatttaggtc agaagatgaa attaactaaa atatatttga aaaagttttc tcgcgttctt 3961 tgtcttgcga ttggatttgc atcagcattt acatatagtt atataaccca acctaagccg 4021 gaggttaaaa aggtagtctc tcagacctat gattttgata aattcactat tgactcttct 4081 cagcgtctta atctaagcta tcgctatgtt ttcaaggatt ctaagggaaa attaattaat 4141 agcgacgatt tacagaagca aggttattca ctcacatata ttgatttatg tactgtttcc 4201 attaaaaaag gtaattcaaa tgaaattgtt aaatgtaatt aattttgttt tcttgatgtt 4261 tgtttcatca tcttcttttg ctcaagtaat tgaaatgaat aattcgtctc tgcgcgattt 4321 cgttacttgg tattcaaagc aaacaggtga atctgttatt gtctcgcctg atgtaaaggg 4381 tactgtgact gtatattcat ctgacgttaa acctgaaaat ctacgcgatt tctttatttc 4441 tgttttacgt gcaaataatt ttgatatggt tggttcaatc ccttccatta ttcagaagta 4501 taatccaaac aatcaggact atattgatga attgccatca tctgataatc aggaatatga 4561 tgataattcc gctccttctg gtggtttctt tgttccgcaa aatgataatg ttactcaaac 4621 ttttaaaatt aataacgttc gggcaaagga tttaatacga gttgtagaat tgtttgttaa 4681 atctaatact tctaaatcct caaatgtatt atctgttgac ggctctaatc tattagttgt 4741 tagtgctcct aaagatattt tagataacct tcctcaattc ctttcaactg ttgatttgcc 4801 aactgaccag atattgattg agggtttgat atttgaggtt cagcaaggtg atgctttaga 4861 tttttcattt gctgctggct ctcagcgtgg cactgttgca ggcggtgtta atactgaccg 4921 cctcacctct gttttatctt ctgctggtgg ttcgttcggt atttttaatg gcgatgtttt 4981 agggctatca gttcgcgcat taaagactaa tagccattca aaaatattgt ctgtgccacg 5041 tattcttacg ctttcaggtc agaagggttc tatttctgtt ggtcagaatg tcccttttat 5101 tactggtcgt gtgactggtg aatctgccaa tgtaaataat ccatttcaga cggttgagcg 5161 tcaaaatgta ggtatttcca tgagcgtttt tcccgttgca atggctggcg gtaatattgt 5221 tctggatatt accagcaagg ccgatagttt gagttcttct actcaggcaa gtgatgttat 5281 tactaatcaa agaagtattg cgacaacggt taatttgcgt gatggacaga ctcttttgct 5341 cggtggcctc actgattata aaaacacttc tcaggattct ggcgtaccgt tcctgtctaa 5401 aatcccttta atcggcctcc tgtttagctc ccgctctgat tctaacgagg aaagcacgtt 5461 atacgtgctc gtcaaagcaa ccatagtacg cgccctgtag cggcgcatta agcgcggcgg 5521 gtgtggtggt tacgcgcagc gtgaccgcta cacttgccag cgccctagcg cccgctcctt 5581 tcgctttctt cccttccttt ctcgccacgt tcgccggctt tccccgtcaa gctctaaatc 5641 gggggctccc tttagggttc cgatttagtg ctttacggca cctcgacccc aaaaaacttg 5701 attagggtga tggttcacgt agtgggccat cgccctgata gacggttttt cgccctttga 5761 cgttggagtc cacgttcttt aatagtggac tcttgttcca aactggaaca acactcaacc 5821 ctatctcggt ctattctttt gatttataag ggattttgcc gatttcggcc tattggttaa 5881 aaaatgagct gatttaacaa aaatttaacg cgaattttaa caaaatatta acgtttacaa 5941 tttaaatatt tgcttataca atcttcctgt ttttggggct tttctgatta tcaaccgggg 6001 tacatatgat tgacatgcta gttttacgat taccgttcat cgattctctt gtttgctcca 6061 gactctcagg caatgacctg atagcctttg tagacctctc aaaaatagct accctctccg 6121 gcatgaattt atcagctaga acggttgaat atcatattga tggtgatttg actgtctccg 6181 gcctttctca cccgtttgaa tctttaccta cacattactc aggcattgca tttaaaatat 6241 atgagggttc taaaaatttt tatccttgcg ttgaaataaa ggcttctccc gcaaaagtat 6301 tacagggtca taatgttttt ggtacaaccg atttagcttt atgctctgag gctttattgc 6361 ttaattttgc taattctttg ccttgcctgt atgatttatt ggatgtt //