LOCUS X15031 3575 bp RNA linear PHG 21-NOV-2006 DEFINITION Bacteriophage fr RNA genome. ACCESSION X15031 VERSION X15031.1 KEYWORDS coat protein; lysis protein; replicase. SOURCE Enterobacteria phage fr ORGANISM Enterobacteria phage fr Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Leviviridae; Levivirus. REFERENCE 1 (bases 1 to 3575) AUTHORS Adhin,M.R., Avots,A., Berzin,V., Overbeek,G.P. and van Duin,J. TITLE Complete nucleotide sequence of the group I RNA bacteriophage fr JOURNAL Biochim. Biophys. Acta 1050 (1-3), 104-109 (1990) PUBMED 2207135 REFERENCE 2 AUTHORS Adhin,M.R., Alblas,J. and van Duin,J. TITLE Secondary structure at the 3' terminal region of RNA coliphages: comparison with tRNA JOURNAL Biochim. Biophys. Acta 1050 (1-3), 110-118 (1990) PUBMED 2207136 REFERENCE 3 (bases 1 to 3575) AUTHORS Adhin,M.R. TITLE Direct Submission JOURNAL Submitted (19-APR-1989) Adhin M.R., Dept of Biochemistry Leiden University, Gorlaeus Laboratoria, Einsteinweg 5 P O Box 9502, 2300 RA Leiden, Netherland COMMENT see also for genes coding for A-protein and coat protein. FEATURES Location/Qualifiers source 1..3575 /organism="Enterobacteria phage fr" /mol_type="genomic RNA" /db_xref="taxon:12017" regulatory 117..122 /regulatory_class="ribosome_binding_site" /note="put. ribosome binding site" CDS 129..1310 /note="unnamed protein product; maturation (A) protein (AA 1-393)" /codon_start=1 /transl_table=11 /protein_id="CAA33135.1" /db_xref="GOA:P15966" /db_xref="InterPro:IPR005563" /db_xref="UniProtKB/Swiss-Prot:P15966" /translation="MRKFIPTERMSKSHVVSVREYADGELEDNSLPLIYRSNWSPGQY TSTGPRTKEWHYPSSYSRGAIGIKALDQGKYARLGTSWGREFEERAGYGMSIDARSCY SLFPVSQNLTWIDVPTNVANRATTEVLGKVTQGNFNLGVALAEARSTASQLSTQTIAL IKAYTAARRGNWRQALRYLALNENRKFNSKSVASRWLELQFGWMPLLSDIQGAYEMLT KVHLKAFMPMRAVRQVGQNVSLSGRLTSPAASYKSTCNISRRIVIWFYINDARLAWLS SLGILNPLGIVWEKVPFSFLVDWLLPVGNMLEGLTAPIGCSYQSGTVTDVISGESTIT ADDIYGWDTVRPATAKVQISAVHRGVQSVWPTTGVYVKSPFSMVHTLDALALFRQRLW K" regulatory 1324..1329 /regulatory_class="ribosome_binding_site" /note="put. ribosome binding site" CDS 1336..1728 /note="unnamed protein product; coat protein (AA 1-130)" /codon_start=1 /transl_table=11 /protein_id="CAA33136.1" /db_xref="GOA:P03614" /db_xref="InterPro:IPR002703" /db_xref="InterPro:IPR015954" /db_xref="PDB:1FR5" /db_xref="PDB:1FRS" /db_xref="UniProtKB/Swiss-Prot:P03614" /translation="MASNFEEFVLVDNGGTGDVKVAPSNFANGVAEWISSNSRSQAYK VTCSVRQSSANNRKYTVKVEVPKVATQVQGGVELPVAAWRSYMNMELTIPVFATNDDC ALIVKALQGTFKTGNPIATAIAANSGIY" CDS 1691..1906 /note="unnamed protein product; lysis protein (AA 1-71)" /codon_start=1 /transl_table=11 /protein_id="CAA33137.1" /db_xref="GOA:P19903" /db_xref="InterPro:IPR022599" /db_xref="UniProtKB/Swiss-Prot:P19903" /translation="MQQPSQPTRESTKKPVPFQHEEYPCQNQQRSSTLYVLICLAIFL SKFTNQLLASLLDLLIRIVTTLQQLLT" CDS 1762..3399 /note="unnamed protein product; replicase (AA 1-545)" /codon_start=1 /transl_table=11 /protein_id="CAA33138.1" /db_xref="GOA:P15965" /db_xref="InterPro:IPR005093" /db_xref="InterPro:IPR007096" /db_xref="UniProtKB/Swiss-Prot:P15965" /translation="MSKSTKKFNSLCIDLSRDLSLEVYQSIASVATGSSDPHSDDFTA IAYLRDELLTKHPNLGDGNDEATRRSLAIAKLLEANDRCGQINRDGFLHDATASWDPD VLQTSIRSLIGNLLSGYSSQLFRHCTFSNGASMGHKLQDAAPYKKFAEQATVTPRALK AAVLVKDQCSPWIRHSHVFPESYTFRLVGGNGVFTVPKNNKIDRAACKEPDMNMYLQK GVGGFIRRRLKTVGIDLNDQTINQRLAQQGSRDGSLATIDLSSASDSISDRLVWSFLP PELYSYLDMIRSHYGYVNGKMIRWELFSTMGNGFTFELESMIFWAIVRATQIHFRNTG TIGIYGDDIICPTEIAPRVLEALSFYGFKPNLRKTFTSGSFRESCGAHYFRGVDVKPF YIKKPITDLFSLMLILNRIRGWGVVNGIADPRLYEVWEKLSRLVPRYLFGGTDLQADY YVVSPPILKGIYSKMNGRREYAEARTTGFKLARIARWRKHFSDKHDSGRYIAWFHTGG EITDSMKSAGVRVMRTSEWLQPVPVFPQECGPASSPQ" ORIGIN 1 gggtgggacc cctttcgggg tcctgctcga cttcctgtca agctaaatgc catttttaat 61 gtctttagcg agacgctacc atggctatcg ctgtaggtag ccgcaattcc attgctaggg 121 agcctcgtgt gcgaaagttc ataccaaccg agagaatgag taagagccac gtggtctccg 181 tccgcgaata tgctgacggg gaactcgagg ataactcttt accgttgatt taccgatcca 241 attggtcgcc gggccagtac acaagtacgg gtccgcgcac aaaggaatgg cactacccat 301 cgtcctactc acgtggggcg ataggaatca aggctcttga tcaaggtaag tacgcacgat 361 tgggcacatc gtggggccgc gagttcgaag aacgtgccgg ttatggcatg tctatcgacg 421 cacgtagttg ttatagccta ttccccgtta gtcaaaactt aacatggata gacgtaccaa 481 cgaacgtagc taatcgcgcc acgactgagg tcttaggtaa ggtcactcaa ggtaatttta 541 accttggcgt ggcccttgct gaagcccggt ctacggcctc acaactgtcg acgcaaacca 601 tcgcgttgat taaggcgtac accgcggctc gccgcgggaa ctggcgccag gcactccgct 661 acttagcgct gaacgagaat cgaaaattca attcgaagtc cgtcgcaagc aggtggctgg 721 agttgcagtt cgggtggatg ccgcttctca gcgatatcca aggtgcgtat gagatgctca 781 ccaaagtgca tcttaaggca tttatgccta tgcgtgccgt gaggcaagtc ggacaaaacg 841 tcagtttgtc tggccggctc acttctccgg ctgcaagcta taagtctacg tgcaacatat 901 cacgacgcat tgtgatatgg ttttacataa acgatgcacg tctggcttgg ctgtcctcct 961 tagggatttt gaacccgcta ggaatagtgt gggaaaaggt cccgttctct ttcctggtcg 1021 attggttgct gccggttggg aacatgcttg aggggcttac cgccccgata ggctgttcgt 1081 atcaatcggg aaccgtaacc gacgtaatat caggagagtc gacaataacc gccgatgaca 1141 tctatggttg ggatacagtg cgacctgcaa ccgctaaggt gcaaatcagt gctgtccacc 1201 ggggggtaca aagcgtgtgg cccacaacgg gcgtatacgt taagtcacct ttctcgatgg 1261 tccatacctt agatgccttg gcacttttca ggcaacgcct ctggaaatag aggccctaac 1321 cgaagggaga gccacatggc ttcgaacttt gaagagttcg ttctcgtcga caatggcgga 1381 acgggagatg taaaagtcgc tccgagcaac ttcgctaacg gggttgcaga atggatcagc 1441 tcgaactcac gttctcaggc ttacaaagtg acctgtagcg tgcgtcagag ctctgcgaac 1501 aatcggaaat acaccgtcaa ggtcgaggtg ccgaaagtgg caactcaggt ccaaggcggc 1561 gttgagcttc ctgttgcggc gtggcgctcg tacatgaata tggaattaac tattccggta 1621 ttcgcgacga acgacgactg tgccttaatc gttaaggcat tgcaaggcac ctttaaaact 1681 ggtaacccaa ttgcaacagc catcgcagcc aactcgggaa tctactaaga aacccgtgcc 1741 attccaacat gaggaatacc catgtcaaaa tcaacaaaga agttcaactc tttatgtatt 1801 gatttgtctc gcgatctttc tctcgaagtt taccaatcaa ttgctagcgt cgctactgga 1861 tcttctgatc cgcatagtga cgactttaca gcaattgctt acctaaggga cgagctttta 1921 acaaagcatc cgaacctagg ggatggtaac gacgaagcaa cccgcagaag cctagctatc 1981 gctaagctgc tggaggcgaa tgaccgttgt ggtcagataa atagggatgg tttcttacat 2041 gacgcaaccg cgtcgtggga tccggatgtt ttacaaacca gcatccgtag ccttattggt 2101 aacctccttt ctggctatag cagtcagttg tttagacact gtacattctc aaacggtgcc 2161 tctatggggc acaagttgca ggatgcagcg ccttataaga agttcgctga acaagcaacc 2221 gtgacgccga gggcgttgaa agcggcagtg ctggtcaaag atcagtgcag tccctggatc 2281 cgtcactcgc acgtcttccc cgagtcatat acatttaggc tcgtgggagg caacggtgtg 2341 tttactgttc cgaagaacaa taaaatagat cgggctgctt gcaaagagcc tgatatgaat 2401 atgtacttac agaaaggggt cggcggtttc atccgtcgcc gccttaagac tgtgggtata 2461 gacttgaacg atcaaacgat caatcaacgc ctggctcaac aaggtagccg tgatgggtct 2521 ttggcgacga tagacttatc gtctgcttct gactccatca gcgaccgcct agtgtggagt 2581 tttctcccac ctgagctata ttcatatctc gacatgattc gaagccacta cggttacgta 2641 aatggcaaga tgattcgttg ggaactattt tcgacgatgg gtaatgggtt cacctttgaa 2701 ctagagtcca tgattttctg ggctatagtc agggctactc agatccattt tcgtaacacc 2761 ggaaccattg gcatctatgg ggacgatatt atatgcccca cagagattgc acctcgcgtg 2821 ctggaagcac tgagcttcta cggtttcaaa ccgaatctac gaaagacgtt cacgtccggc 2881 tcttttcgcg agagctgcgg cgcgcactat ttccgtggtg tcgatgttaa accattttat 2941 atcaagaaac caatcactga cctattctcc ctaatgctta tacttaaccg tatacgcgga 3001 tggggggtag tcaacggaat agcagaccca cgcctctacg aggtatggga gaagctctcc 3061 agattggtac cgagatattt atttggtggg acggacctgc aggccgatta ctacgtcgtg 3121 tcacctccta ttctgaaagg aatttattcc aagatgaatg ggagacgcga gtatgccgaa 3181 gctagaacaa caggcttcaa gctcgctcgc atcgcgaggt ggcgaaagca cttttccgat 3241 aagcacgact caggtcggta cattgcgtgg ttccatactg gaggtgagat caccgatagt 3301 atgaagtccg ccggtgtacg cgttatgcgt acttcggagt ggctacagcc ggttcccgtg 3361 ttccctcagg aatgcgggcc agcgagctct cctcagtagc aaaactgagg gacccccgta 3421 agcggggtgg gtgtgctcga aagagcacgg gtccgcgaaa gcggtggctc atcagaaatg 3481 gtgggtgagg gttcgccctc taggactggc cccgaaaggt caggcccggg attctcccga 3541 ttttggtagc tagttgcttg gctagctacc accca //