locus-tag class description EQI29_00005 PF08299 Bacterial dnaA protein helix-turn-helix EQI29_00005 PF00308 Bacterial dnaA protein EQI29_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EQI29_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EQI29_00010 PF02767 DNA polymerase III beta subunit, central domain EQI29_00020 PF02463 RecF/RecN/SMC N terminal domain EQI29_00025 PF00204 DNA gyrase B EQI29_00025 PF00986 DNA gyrase B subunit, carboxyl terminus EQI29_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_00025 PF01751 Toprim domain EQI29_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A EQI29_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller EQI29_00035 PF01250 Ribosomal protein S6 EQI29_00040 PF00436 Single-strand binding protein family EQI29_00045 PF01084 Ribosomal protein S18 EQI29_00050 PF01368 DHH family EQI29_00050 PF02272 DHHA1 domain EQI29_00055 PF03948 Ribosomal protein L9, C-terminal domain EQI29_00055 PF01281 Ribosomal protein L9, N-terminal domain EQI29_00060 PF03796 DnaB-like helicase C terminal domain EQI29_00060 PF00772 DnaB-like helicase N terminal domain EQI29_00065 PF00709 Adenylosuccinate synthetase EQI29_00070 PF02645 Uncharacterised protein, DegV family COG1307 EQI29_00075 PF12848 ABC transporter EQI29_00075 PF00005 ABC transporter EQI29_00090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EQI29_00090 PF00205 Thiamine pyrophosphate enzyme, central domain EQI29_00090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EQI29_00095 PF02535 ZIP Zinc transporter EQI29_00105 PF06736 Protein of unknown function (DUF1211) EQI29_00110 PF04892 VanZ like family EQI29_00115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQI29_00120 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_00125 PF12911 N-terminal TM domain of oligopeptide transport permease C EQI29_00125 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_00130 PF00005 ABC transporter EQI29_00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQI29_00135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQI29_00135 PF00005 ABC transporter EQI29_00205 PF00455 DeoR C terminal sensor domain EQI29_00205 PF08220 DeoR-like helix-turn-helix domain EQI29_00210 PF00232 Glycosyl hydrolase family 1 EQI29_00215 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQI29_00220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_00220 PF02378 Phosphotransferase system, EIIC EQI29_00225 PF07745 Glycosyl hydrolase family 53 EQI29_00230 PF00958 GMP synthase C terminal domain EQI29_00230 PF02540 NAD synthase EQI29_00230 PF00117 Glutamine amidotransferase class-I EQI29_00235 PF00485 Phosphoribulokinase / Uridine kinase family EQI29_00240 PF05175 Methyltransferase small domain EQI29_00245 PF00356 Bacterial regulatory proteins, lacI family EQI29_00250 PF02885 Glycosyl transferase family, helical bundle domain EQI29_00250 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EQI29_00250 PF00591 Glycosyl transferase family, a/b domain EQI29_00255 PF01791 DeoC/LacD family aldolase EQI29_00260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EQI29_00265 PF02608 ABC transporter substrate-binding protein PnrA-like EQI29_00285 PF01676 Metalloenzyme superfamily EQI29_00290 PF01048 Phosphorylase superfamily EQI29_00295 PF01048 Phosphorylase superfamily EQI29_00310 PF00300 Histidine phosphatase superfamily (branch 1) EQI29_00315 PF00239 Resolvase, N terminal domain EQI29_00315 PF02796 Helix-turn-helix domain of resolvase EQI29_00320 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EQI29_00325 PF00164 Ribosomal protein S12/S23 EQI29_00330 PF00177 Ribosomal protein S7p/S5e EQI29_00335 PF03144 Elongation factor Tu domain 2 EQI29_00335 PF00009 Elongation factor Tu GTP binding domain EQI29_00335 PF03764 Elongation factor G, domain IV EQI29_00335 PF14492 Elongation Factor G, domain II EQI29_00335 PF00679 Elongation factor G C-terminus EQI29_00340 PF00009 Elongation factor Tu GTP binding domain EQI29_00340 PF03144 Elongation factor Tu domain 2 EQI29_00340 PF03143 Elongation factor Tu C-terminal domain EQI29_00345 PF00338 Ribosomal protein S10p/S20e EQI29_00350 PF00297 Ribosomal protein L3 EQI29_00355 PF00573 Ribosomal protein L4/L1 family EQI29_00360 PF00276 Ribosomal protein L23 EQI29_00365 PF03947 Ribosomal Proteins L2, C-terminal domain EQI29_00365 PF00181 Ribosomal Proteins L2, RNA binding domain EQI29_00370 PF00203 Ribosomal protein S19 EQI29_00375 PF00237 Ribosomal protein L22p/L17e EQI29_00380 PF07650 KH domain EQI29_00380 PF00189 Ribosomal protein S3, C-terminal domain EQI29_00385 PF00252 Ribosomal protein L16p/L10e EQI29_00390 PF00831 Ribosomal L29 protein EQI29_00395 PF00366 Ribosomal protein S17 EQI29_00400 PF00238 Ribosomal protein L14p/L23e EQI29_00405 PF00467 KOW motif EQI29_00405 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EQI29_00410 PF00281 Ribosomal protein L5 EQI29_00410 PF00673 ribosomal L5P family C-terminus EQI29_00415 PF00253 Ribosomal protein S14p/S29e EQI29_00420 PF00410 Ribosomal protein S8 EQI29_00425 PF00347 Ribosomal protein L6 EQI29_00430 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EQI29_00435 PF03719 Ribosomal protein S5, C-terminal domain EQI29_00435 PF00333 Ribosomal protein S5, N-terminal domain EQI29_00440 PF00327 Ribosomal protein L30p/L7e EQI29_00445 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EQI29_00450 PF00344 SecY translocase EQI29_00455 PF05191 Adenylate kinase, active site lid EQI29_00460 PF01176 Translation initiation factor 1A / IF-1 EQI29_00465 PF00444 Ribosomal protein L36 EQI29_00470 PF00416 Ribosomal protein S13/S18 EQI29_00475 PF00411 Ribosomal protein S11 EQI29_00480 PF01000 RNA polymerase Rpb3/RpoA insert domain EQI29_00480 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EQI29_00480 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EQI29_00485 PF01196 Ribosomal protein L17 EQI29_00490 PF00005 ABC transporter EQI29_00495 PF00005 ABC transporter EQI29_00500 PF02361 Cobalt transport protein EQI29_00505 PF01416 tRNA pseudouridine synthase EQI29_00515 PF00830 Ribosomal L28 family EQI29_00525 PF03780 Asp23 family, cell envelope-related function EQI29_00530 PF02734 DAK2 domain EQI29_00530 PF13684 Dihydroxyacetone kinase family EQI29_00535 PF00271 Helicase conserved C-terminal domain EQI29_00535 PF17191 RecG wedge domain EQI29_00535 PF00270 DEAD/DEAH box helicase EQI29_00540 PF02504 Fatty acid synthesis protein EQI29_00545 PF00550 Phosphopantetheine attachment site EQI29_00550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQI29_00550 PF00005 ABC transporter EQI29_00555 PF00005 ABC transporter EQI29_00555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQI29_00560 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_00565 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_00570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQI29_00575 PF00035 Double-stranded RNA binding motif EQI29_00575 PF14622 Ribonuclease-III-like EQI29_00580 PF06470 SMC proteins Flexible Hinge Domain EQI29_00580 PF02463 RecF/RecN/SMC N terminal domain EQI29_00590 PF00448 SRP54-type protein, GTPase domain EQI29_00590 PF02881 SRP54-type protein, helical bundle domain EQI29_00595 PF04262 Glutamate-cysteine ligase EQI29_00595 PF18419 ATP-grasp-like domain EQI29_00595 PF02655 ATP-grasp domain EQI29_00605 PF01032 FecCD transport family EQI29_00610 PF01032 FecCD transport family EQI29_00615 PF00005 ABC transporter EQI29_00620 PF01497 Periplasmic binding protein EQI29_00670 PF00230 Major intrinsic protein EQI29_00675 PF03788 LrgA family EQI29_00680 PF04172 LrgB-like family EQI29_00705 PF02632 BioY family EQI29_00710 PF01479 S4 domain EQI29_00710 PF00163 Ribosomal protein S4/S9 N-terminal domain EQI29_00730 PF13277 YmdB-like protein EQI29_00740 PF05188 MutS domain II EQI29_00740 PF01624 MutS domain I EQI29_00740 PF00488 MutS domain V EQI29_00740 PF05190 MutS family domain IV EQI29_00740 PF05192 MutS domain III EQI29_00745 PF08676 MutL C terminal dimerisation domain EQI29_00745 PF01119 DNA mismatch repair protein, C-terminal domain EQI29_00750 PF02545 Maf-like protein EQI29_00755 PF02378 Phosphotransferase system, EIIC EQI29_00755 PF00367 phosphotransferase system, EIIB EQI29_00760 PF07702 UTRA domain EQI29_00760 PF00392 Bacterial regulatory proteins, gntR family EQI29_00765 PF01641 SelR domain EQI29_00770 PF07499 RuvA, C-terminal domain EQI29_00770 PF01330 RuvA N terminal domain EQI29_00775 PF17864 RuvB AAA lid domain EQI29_00775 PF05491 RuvB C-terminal winged helix domain EQI29_00775 PF05496 Holliday junction DNA helicase RuvB P-loop domain EQI29_00785 PF01451 Low molecular weight phosphotyrosine protein phosphatase EQI29_00805 PF13333 Integrase core domain EQI29_00805 PF13276 HTH-like domain EQI29_00805 PF01527 Transposase EQI29_00805 PF00665 Integrase core domain EQI29_00830 PF04397 LytTr DNA-binding domain EQI29_00830 PF00072 Response regulator receiver domain EQI29_00860 PF06736 Protein of unknown function (DUF1211) EQI29_00865 PF00324 Amino acid permease EQI29_00870 PF00005 ABC transporter EQI29_00875 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_00890 PF02146 Sir2 family EQI29_00895 PF12464 Maltose acetyltransferase EQI29_00895 PF14602 Hexapeptide repeat of succinyl-transferase EQI29_00900 PF08279 HTH domain EQI29_00900 PF02829 3H domain EQI29_00920 PF01327 Polypeptide deformylase EQI29_00925 PF00312 Ribosomal protein S15 EQI29_00930 PF03725 3' exoribonuclease family, domain 2 EQI29_00930 PF01138 3' exoribonuclease family, domain 1 EQI29_00930 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EQI29_00930 PF00013 KH domain EQI29_00930 PF00575 S1 RNA binding domain EQI29_00940 PF02705 K+ potassium transporter EQI29_00945 PF00571 CBS domain EQI29_00945 PF01595 Cyclin M transmembrane N-terminal domain EQI29_00945 PF03471 Transporter associated domain EQI29_00950 PF01554 MatE EQI29_00960 PF01386 Ribosomal L25p family EQI29_00960 PF14693 Ribosomal protein TL5, C-terminal domain EQI29_00965 PF00849 RNA pseudouridylate synthase EQI29_00965 PF01479 S4 domain EQI29_00970 PF13419 Haloacid dehalogenase-like hydrolase EQI29_00975 PF00485 Phosphoribulokinase / Uridine kinase family EQI29_00995 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EQI29_01005 PF03109 ABC1 family EQI29_01010 PF01820 D-ala D-ala ligase N-terminus EQI29_01010 PF07478 D-ala D-ala ligase C-terminus EQI29_01015 PF01225 Mur ligase family, catalytic domain EQI29_01015 PF02875 Mur ligase family, glutamate ligase domain EQI29_01015 PF08245 Mur ligase middle domain EQI29_01020 PF00271 Helicase conserved C-terminal domain EQI29_01020 PF00270 DEAD/DEAH box helicase EQI29_01025 PF01648 4'-phosphopantetheinyl transferase superfamily EQI29_01030 PF00842 Alanine racemase, C-terminal domain EQI29_01030 PF01168 Alanine racemase, N-terminal domain EQI29_01035 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EQI29_01040 PF00253 Ribosomal protein S14p/S29e EQI29_01045 PF08240 Alcohol dehydrogenase GroES-like domain EQI29_01045 PF00698 Acyl transferase domain EQI29_01045 PF02801 Beta-ketoacyl synthase, C-terminal domain EQI29_01045 PF00109 Beta-ketoacyl synthase, N-terminal domain EQI29_01045 PF16197 Ketoacyl-synthetase C-terminal extension EQI29_01045 PF00550 Phosphopantetheine attachment site EQI29_01045 PF08659 KR domain EQI29_01045 PF14765 Polyketide synthase dehydratase EQI29_01050 PF01061 ABC-2 type transporter EQI29_01060 PF13520 Amino acid permease EQI29_01070 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_01075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EQI29_01080 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_01085 PF00005 ABC transporter EQI29_01085 PF00571 CBS domain EQI29_01090 PF02547 Queuosine biosynthesis protein EQI29_01095 PF00689 Cation transporting ATPase, C-terminus EQI29_01095 PF00690 Cation transporter/ATPase, N-terminus EQI29_01105 PF01702 Queuine tRNA-ribosyltransferase EQI29_01110 PF02699 Preprotein translocase subunit EQI29_01120 PF00171 Aldehyde dehydrogenase family EQI29_01120 PF00465 Iron-containing alcohol dehydrogenase EQI29_01125 PF07470 Glycosyl Hydrolase Family 88 EQI29_01130 PF03480 Bacterial extracellular solute-binding protein, family 7 EQI29_01140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EQI29_01155 PF02311 AraC-like ligand binding domain EQI29_01155 PF12833 Helix-turn-helix domain EQI29_01160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EQI29_01160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EQI29_01165 PF06134 L-rhamnose isomerase (RhaA) EQI29_01170 PF00596 Class II Aldolase and Adducin N-terminal domain EQI29_01175 PF05336 L-rhamnose mutarotase EQI29_01180 PF00465 Iron-containing alcohol dehydrogenase EQI29_01185 PF09339 IclR helix-turn-helix domain EQI29_01185 PF01614 Bacterial transcriptional regulator EQI29_01190 PF01081 KDPG and KHG aldolase EQI29_01200 PF04962 KduI/IolB family EQI29_01205 PF00106 short chain dehydrogenase EQI29_01210 PF01070 FMN-dependent dehydrogenase EQI29_01215 PF00288 GHMP kinases N terminal domain EQI29_01215 PF08544 GHMP kinases C terminal EQI29_01225 PF08544 GHMP kinases C terminal EQI29_01225 PF10509 Galactokinase galactose-binding signature EQI29_01225 PF00288 GHMP kinases N terminal domain EQI29_01230 PF01712 Deoxynucleoside kinase EQI29_01245 PF05198 Translation initiation factor IF-3, N-terminal domain EQI29_01245 PF00707 Translation initiation factor IF-3, C-terminal domain EQI29_01250 PF01632 Ribosomal protein L35 EQI29_01255 PF00453 Ribosomal protein L20 EQI29_01265 PF05378 Hydantoinase/oxoprolinase N-terminal region EQI29_01265 PF01968 Hydantoinase/oxoprolinase EQI29_01280 PF03061 Thioesterase superfamily EQI29_01285 PF01256 Carbohydrate kinase EQI29_01290 PF01546 Peptidase family M20/M25/M40 EQI29_01295 PF00535 Glycosyl transferase family 2 EQI29_01305 PF05343 M42 glutamyl aminopeptidase EQI29_01310 PF00085 Thioredoxin EQI29_01315 PF00582 Universal stress protein family EQI29_01325 PF14794 Domain of unknown function (DUF4479) EQI29_01325 PF01588 Putative tRNA binding domain EQI29_01330 PF13180 PDZ domain EQI29_01335 PF02590 Predicted SPOUT methyltransferase EQI29_01340 PF07308 Protein of unknown function (DUF1456) EQI29_01350 PF02558 Ketopantoate reductase PanE/ApbA EQI29_01350 PF08546 Ketopantoate reductase PanE/ApbA C terminal EQI29_01365 PF01625 Peptide methionine sulfoxide reductase EQI29_01375 PF13673 Acetyltransferase (GNAT) domain EQI29_01395 PF02796 Helix-turn-helix domain of resolvase EQI29_01395 PF00239 Resolvase, N terminal domain EQI29_01400 PF02796 Helix-turn-helix domain of resolvase EQI29_01400 PF00239 Resolvase, N terminal domain EQI29_01420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_01425 PF00571 CBS domain EQI29_01425 PF01380 SIS domain EQI29_01430 PF00701 Dihydrodipicolinate synthetase family EQI29_01435 PF01081 KDPG and KHG aldolase EQI29_01440 PF05043 Mga helix-turn-helix domain EQI29_01440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_01440 PF08279 HTH domain EQI29_01440 PF00874 PRD domain EQI29_01445 PF13419 Haloacid dehalogenase-like hydrolase EQI29_01460 PF03611 PTS system sugar-specific permease component EQI29_01465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_01480 PF13610 DDE domain EQI29_01490 PF00717 Peptidase S24-like EQI29_01490 PF01726 LexA DNA binding domain EQI29_01500 PF17871 AAA lid domain EQI29_01500 PF07724 AAA domain (Cdc48 subfamily) EQI29_01500 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_01500 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_01535 PF04228 Putative neutral zinc metallopeptidase EQI29_01545 PF05043 Mga helix-turn-helix domain EQI29_01545 PF08279 HTH domain EQI29_01545 PF00874 PRD domain EQI29_01545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_01555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_01575 PF00248 Aldo/keto reductase family EQI29_01580 PF05067 Manganese containing catalase EQI29_01590 PF04226 Transglycosylase associated protein EQI29_01595 PF02566 OsmC-like protein EQI29_01610 PF00480 ROK family EQI29_01615 PF00356 Bacterial regulatory proteins, lacI family EQI29_01620 PF00251 Glycosyl hydrolases family 32 N-terminal domain EQI29_01620 PF08244 Glycosyl hydrolases family 32 C terminal EQI29_01625 PF00367 phosphotransferase system, EIIB EQI29_01625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_01625 PF02378 Phosphotransferase system, EIIC EQI29_01640 PF00403 Heavy-metal-associated domain EQI29_01645 PF00403 Heavy-metal-associated domain EQI29_01660 PF00375 Sodium:dicarboxylate symporter family EQI29_01690 PF01625 Peptide methionine sulfoxide reductase EQI29_01695 PF00248 Aldo/keto reductase family EQI29_01700 PF07729 FCD domain EQI29_01700 PF00392 Bacterial regulatory proteins, gntR family EQI29_01705 PF02378 Phosphotransferase system, EIIC EQI29_01710 PF00232 Glycosyl hydrolase family 1 EQI29_01715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_01720 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQI29_01725 PF02378 Phosphotransferase system, EIIC EQI29_01745 PF00107 Zinc-binding dehydrogenase EQI29_01745 PF08240 Alcohol dehydrogenase GroES-like domain EQI29_01745 PF13823 Alcohol dehydrogenase GroES-associated EQI29_01760 PF06100 MCRA family EQI29_01785 PF01867 CRISPR associated protein Cas1 EQI29_01790 PF09827 CRISPR associated protein Cas2 EQI29_01795 PF09711 CRISPR-associated protein (Cas_Csn2) EQI29_01815 PF00689 Cation transporting ATPase, C-terminus EQI29_01815 PF00690 Cation transporter/ATPase, N-terminus EQI29_01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EQI29_01830 PF03466 LysR substrate binding domain EQI29_01835 PF00698 Acyl transferase domain EQI29_01840 PF16957 Malonate decarboxylase, alpha subunit, transporter EQI29_01845 PF06857 Malonate decarboxylase delta subunit (MdcD) EQI29_01850 PF01039 Carboxyl transferase domain EQI29_01855 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG EQI29_01865 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase EQI29_01875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_01885 PF03611 PTS system sugar-specific permease component EQI29_01895 PF01116 Fructose-bisphosphate aldolase class-II EQI29_01910 PF00293 NUDIX domain EQI29_01915 PF01047 MarR family EQI29_01920 PF13673 Acetyltransferase (GNAT) domain EQI29_01940 PF00860 Permease family EQI29_01950 PF16657 Maltogenic Amylase, C-terminal domain EQI29_01950 PF00128 Alpha amylase, catalytic domain EQI29_01960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EQI29_01980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EQI29_01980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EQI29_01985 PF01266 FAD dependent oxidoreductase EQI29_01985 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EQI29_01990 PF00230 Major intrinsic protein EQI29_01995 PF01713 Smr domain EQI29_01995 PF00488 MutS domain V EQI29_02000 PF01066 CDP-alcohol phosphatidyltransferase EQI29_02010 PF02583 Metal-sensitive transcriptional repressor EQI29_02015 PF00581 Rhodanese-like domain EQI29_02020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_02020 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_02025 PF13538 UvrD-like helicase C-terminal domain EQI29_02045 PF00535 Glycosyl transferase family 2 EQI29_02055 PF01906 Putative heavy-metal-binding EQI29_02060 PF03610 PTS system fructose IIA component EQI29_02065 PF02733 Dak1 domain EQI29_02070 PF02734 DAK2 domain EQI29_02075 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) EQI29_02115 PF00027 Cyclic nucleotide-binding domain EQI29_02115 PF13545 Crp-like helix-turn-helix domain EQI29_02125 PF13732 Domain of unknown function (DUF4162) EQI29_02125 PF00005 ABC transporter EQI29_02130 PF00440 Bacterial regulatory proteins, tetR family EQI29_02130 PF16859 Tetracyclin repressor-like, C-terminal domain EQI29_02140 PF00579 tRNA synthetases class I (W and Y) EQI29_02140 PF01479 S4 domain EQI29_02150 PF13520 Amino acid permease EQI29_02180 PF00356 Bacterial regulatory proteins, lacI family EQI29_02180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EQI29_02190 PF13419 Haloacid dehalogenase-like hydrolase EQI29_02195 PF03636 Glycosyl hydrolase family 65, N-terminal domain EQI29_02195 PF03632 Glycosyl hydrolase family 65 central catalytic domain EQI29_02195 PF03633 Glycosyl hydrolase family 65, C-terminal domain EQI29_02200 PF00367 phosphotransferase system, EIIB EQI29_02200 PF02378 Phosphotransferase system, EIIC EQI29_02200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_02205 PF03372 Endonuclease/Exonuclease/phosphatase family EQI29_02245 PF05870 Phenolic acid decarboxylase (PAD) EQI29_02250 PF10400 Virulence activator alpha C-term EQI29_02250 PF03551 Transcriptional regulator PadR-like family EQI29_02260 PF07690 Major Facilitator Superfamily EQI29_02285 PF02441 Flavoprotein EQI29_02290 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EQI29_02300 PF12704 MacB-like periplasmic core domain EQI29_02300 PF02687 FtsX-like permease family EQI29_02300 PF02687 FtsX-like permease family EQI29_02300 PF00005 ABC transporter EQI29_02300 PF12704 MacB-like periplasmic core domain EQI29_02300 PF00005 ABC transporter EQI29_02305 PF00486 Transcriptional regulatory protein, C terminal EQI29_02305 PF00072 Response regulator receiver domain EQI29_02310 PF00512 His Kinase A (phospho-acceptor) domain EQI29_02310 PF00672 HAMP domain EQI29_02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_02325 PF03466 LysR substrate binding domain EQI29_02325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EQI29_02330 PF04474 Protein of unknown function (DUF554) EQI29_02365 PF00005 ABC transporter EQI29_02375 PF01263 Aldose 1-epimerase EQI29_02380 PF05257 CHAP domain EQI29_02380 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EQI29_02385 PF02378 Phosphotransferase system, EIIC EQI29_02385 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_02385 PF00367 phosphotransferase system, EIIB EQI29_02390 PF05025 RbsD / FucU transport protein family EQI29_02395 PF00294 pfkB family carbohydrate kinase EQI29_02395 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EQI29_02400 PF00356 Bacterial regulatory proteins, lacI family EQI29_02405 PF00857 Isochorismatase family EQI29_02410 PF00005 ABC transporter EQI29_02420 PF00128 Alpha amylase, catalytic domain EQI29_02420 PF16657 Maltogenic Amylase, C-terminal domain EQI29_02430 PF01594 AI-2E family transporter EQI29_02435 PF01297 Zinc-uptake complex component A periplasmic EQI29_02435 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EQI29_02440 PF00072 Response regulator receiver domain EQI29_02440 PF04397 LytTr DNA-binding domain EQI29_02450 PF04647 Accessory gene regulator B EQI29_02460 PF01712 Deoxynucleoside kinase EQI29_02475 PF13361 UvrD-like helicase C-terminal domain EQI29_02475 PF00580 UvrD/REP helicase N-terminal domain EQI29_02485 PF03960 ArsC family EQI29_02490 PF03960 ArsC family EQI29_02520 PF00255 Glutathione peroxidase EQI29_02525 PF02664 S-Ribosylhomocysteinase (LuxS) EQI29_02530 PF01053 Cys/Met metabolism PLP-dependent enzyme EQI29_02535 PF00291 Pyridoxal-phosphate dependent enzyme EQI29_02545 PF09285 Elongation factor P, C-terminal EQI29_02545 PF01132 Elongation factor P (EF-P) OB domain EQI29_02545 PF08207 Elongation factor P (EF-P) KOW-like domain EQI29_02550 PF00226 DnaJ domain EQI29_02550 PF01556 DnaJ C terminal domain EQI29_02550 PF00684 DnaJ central domain EQI29_02555 PF14863 Alkyl sulfatase dimerisation EQI29_02555 PF14864 Alkyl sulfatase C-terminal EQI29_02555 PF00753 Metallo-beta-lactamase superfamily EQI29_02560 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EQI29_02560 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EQI29_02565 PF01678 Diaminopimelate epimerase EQI29_02570 PF00701 Dihydrodipicolinate synthetase family EQI29_02575 PF01113 Dihydrodipicolinate reductase, N-terminus EQI29_02575 PF05173 Dihydrodipicolinate reductase, C-terminus EQI29_02580 PF00132 Bacterial transferase hexapeptide (six repeats) EQI29_02580 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal EQI29_02580 PF14602 Hexapeptide repeat of succinyl-transferase EQI29_02585 PF02774 Semialdehyde dehydrogenase, dimerisation domain EQI29_02585 PF01118 Semialdehyde dehydrogenase, NAD binding domain EQI29_02590 PF00696 Amino acid kinase family EQI29_02590 PF13840 ACT domain EQI29_02595 PF01546 Peptidase family M20/M25/M40 EQI29_02595 PF07687 Peptidase dimerisation domain EQI29_02600 PF00155 Aminotransferase class I and II EQI29_02605 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_02605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_02620 PF11799 impB/mucB/samB family C-terminal domain EQI29_02620 PF11798 IMS family HHH motif EQI29_02620 PF00817 impB/mucB/samB family EQI29_02625 PF00288 GHMP kinases N terminal domain EQI29_02625 PF10509 Galactokinase galactose-binding signature EQI29_02625 PF08544 GHMP kinases C terminal EQI29_02630 PF01263 Aldose 1-epimerase EQI29_02635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_02640 PF12833 Helix-turn-helix domain EQI29_02640 PF02311 AraC-like ligand binding domain EQI29_02645 PF02525 Flavodoxin-like fold EQI29_02655 PF00324 Amino acid permease EQI29_02660 PF00005 ABC transporter EQI29_02665 PF00950 ABC 3 transport family EQI29_02670 PF01297 Zinc-uptake complex component A periplasmic EQI29_02680 PF08331 Domain of unknown function (DUF1730) EQI29_02685 PF01476 LysM domain EQI29_02685 PF04972 BON domain EQI29_02700 PF01266 FAD dependent oxidoreductase EQI29_02705 PF07690 Major Facilitator Superfamily EQI29_02715 PF02863 Arginine repressor, C-terminal domain EQI29_02715 PF01316 Arginine repressor, DNA binding domain EQI29_02720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EQI29_02720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EQI29_02720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EQI29_02720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EQI29_02730 PF02566 OsmC-like protein EQI29_02735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_02735 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_02745 PF16925 Tetracyclin repressor-like, C-terminal domain EQI29_02745 PF00440 Bacterial regulatory proteins, tetR family EQI29_02755 PF02586 SOS response associated peptidase (SRAP) EQI29_02770 PF05067 Manganese containing catalase EQI29_02775 PF01547 Bacterial extracellular solute-binding protein EQI29_02780 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_02785 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_02795 PF01569 PAP2 superfamily EQI29_02825 PF00486 Transcriptional regulatory protein, C terminal EQI29_02825 PF00072 Response regulator receiver domain EQI29_02830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_02835 PF06800 Sugar transport protein EQI29_02840 PF13520 Amino acid permease EQI29_02845 PF05816 Toxic anion resistance protein (TelA) EQI29_02860 PF00293 NUDIX domain EQI29_02870 PF01048 Phosphorylase superfamily EQI29_02875 PF00857 Isochorismatase family EQI29_02890 PF01431 Peptidase family M13 EQI29_02890 PF05649 Peptidase family M13 EQI29_02900 PF14572 Phosphoribosyl synthetase-associated domain EQI29_02900 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EQI29_02905 PF00266 Aminotransferase class-V EQI29_02915 PF07690 Major Facilitator Superfamily EQI29_02930 PF13520 Amino acid permease EQI29_02935 PF00155 Aminotransferase class I and II EQI29_02940 PF07690 Major Facilitator Superfamily EQI29_02955 PF01131 DNA topoisomerase EQI29_02955 PF01751 Toprim domain EQI29_02960 PF00535 Glycosyl transferase family 2 EQI29_02965 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EQI29_02965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EQI29_02970 PF03601 Conserved hypothetical protein 698 EQI29_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EQI29_02990 PF03466 LysR substrate binding domain EQI29_03000 PF01098 Cell cycle protein EQI29_03005 PF03960 ArsC family EQI29_03010 PF01597 Glycine cleavage H-protein EQI29_03015 PF09383 NIL domain EQI29_03015 PF00005 ABC transporter EQI29_03020 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_03025 PF03180 NLPA lipoprotein EQI29_03030 PF00005 ABC transporter EQI29_03035 PF01458 Uncharacterized protein family (UPF0051) EQI29_03040 PF00266 Aminotransferase class-V EQI29_03045 PF01592 NifU-like N terminal domain EQI29_03050 PF01458 Uncharacterized protein family (UPF0051) EQI29_03070 PF12704 MacB-like periplasmic core domain EQI29_03070 PF02687 FtsX-like permease family EQI29_03070 PF00005 ABC transporter EQI29_03075 PF13145 PPIC-type PPIASE domain EQI29_03085 PF00781 Diacylglycerol kinase catalytic domain EQI29_03135 PF04203 Sortase domain EQI29_03140 PF03123 CAT RNA binding domain EQI29_03140 PF00874 PRD domain EQI29_03145 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_03145 PF02378 Phosphotransferase system, EIIC EQI29_03145 PF00367 phosphotransferase system, EIIB EQI29_03150 PF00232 Glycosyl hydrolase family 1 EQI29_03160 PF02378 Phosphotransferase system, EIIC EQI29_03170 PF01979 Amidohydrolase family EQI29_03175 PF03841 L-seryl-tRNA selenium transferase EQI29_03180 PF07071 KDGP aldolase EQI29_03220 PF00874 PRD domain EQI29_03220 PF03123 CAT RNA binding domain EQI29_03225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_03225 PF02378 Phosphotransferase system, EIIC EQI29_03225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_03230 PF01116 Fructose-bisphosphate aldolase class-II EQI29_03240 PF02378 Phosphotransferase system, EIIC EQI29_03240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_03255 PF03641 Possible lysine decarboxylase EQI29_03265 PF01712 Deoxynucleoside kinase EQI29_03275 PF00356 Bacterial regulatory proteins, lacI family EQI29_03275 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EQI29_03280 PF00232 Glycosyl hydrolase family 1 EQI29_03290 PF00884 Sulfatase EQI29_03305 PF00689 Cation transporting ATPase, C-terminus EQI29_03305 PF00690 Cation transporter/ATPase, N-terminus EQI29_03310 PF13419 Haloacid dehalogenase-like hydrolase EQI29_03320 PF00005 ABC transporter EQI29_03320 PF09383 NIL domain EQI29_03325 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_03330 PF03180 NLPA lipoprotein EQI29_03335 PF07687 Peptidase dimerisation domain EQI29_03335 PF01546 Peptidase family M20/M25/M40 EQI29_03355 PF00324 Amino acid permease EQI29_03365 PF02558 Ketopantoate reductase PanE/ApbA EQI29_03365 PF08546 Ketopantoate reductase PanE/ApbA C terminal EQI29_03375 PF12848 ABC transporter EQI29_03375 PF00005 ABC transporter EQI29_03380 PF00300 Histidine phosphatase superfamily (branch 1) EQI29_03390 PF13580 SIS domain EQI29_03395 PF02378 Phosphotransferase system, EIIC EQI29_03395 PF00367 phosphotransferase system, EIIB EQI29_03400 PF07972 NrdI Flavodoxin like EQI29_03405 PF13520 Amino acid permease EQI29_03410 PF12679 ABC-2 family transporter protein EQI29_03415 PF00005 ABC transporter EQI29_03435 PF01470 Pyroglutamyl peptidase EQI29_03450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EQI29_03500 PF03167 Uracil DNA glycosylase superfamily EQI29_03505 PF01515 Phosphate acetyl/butaryl transferase EQI29_03510 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EQI29_03515 PF13302 Acetyltransferase (GNAT) domain EQI29_03525 PF11490 DNA polymerase III polC-type N-terminus II EQI29_03525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EQI29_03525 PF14579 Helix-hairpin-helix motif EQI29_03525 PF00929 Exonuclease EQI29_03525 PF02811 PHP domain EQI29_03525 PF07733 Bacterial DNA polymerase III alpha NTPase domain EQI29_03525 PF14480 DNA polymerase III polC-type N-terminus I EQI29_03535 PF03372 Endonuclease/Exonuclease/phosphatase family EQI29_03540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EQI29_03545 PF01565 FAD binding domain EQI29_03545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EQI29_03555 PF00872 Transposase, Mutator family EQI29_03575 PF00890 FAD binding domain EQI29_03575 PF14537 Cytochrome c3 EQI29_03585 PF02801 Beta-ketoacyl synthase, C-terminal domain EQI29_03585 PF16197 Ketoacyl-synthetase C-terminal extension EQI29_03585 PF08659 KR domain EQI29_03585 PF00109 Beta-ketoacyl synthase, N-terminal domain EQI29_03585 PF14765 Polyketide synthase dehydratase EQI29_03585 PF00550 Phosphopantetheine attachment site EQI29_03585 PF08240 Alcohol dehydrogenase GroES-like domain EQI29_03585 PF00698 Acyl transferase domain EQI29_03590 PF13460 NAD(P)H-binding EQI29_03595 PF12822 ECF transporter, substrate-specific component EQI29_03600 PF02441 Flavoprotein EQI29_03605 PF04127 DNA / pantothenate metabolism flavoprotein EQI29_03605 PF02441 Flavoprotein EQI29_03610 PF00107 Zinc-binding dehydrogenase EQI29_03610 PF08240 Alcohol dehydrogenase GroES-like domain EQI29_03620 PF08402 TOBE domain EQI29_03620 PF00005 ABC transporter EQI29_03625 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_03630 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_03635 PF13416 Bacterial extracellular solute-binding protein EQI29_03645 PF01717 Cobalamin-independent synthase, Catalytic domain EQI29_03655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_03655 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_03665 PF12848 ABC transporter EQI29_03665 PF00005 ABC transporter EQI29_03665 PF16326 ABC transporter C-terminal domain EQI29_03670 PF02629 CoA binding domain EQI29_03670 PF06971 Putative DNA-binding protein N-terminus EQI29_03675 PF00085 Thioredoxin EQI29_03680 PF03773 Predicted permease EQI29_03685 PF09323 Domain of unknown function (DUF1980) EQI29_03715 PF06135 IreB regulatory phosphoprotein EQI29_03720 PF03652 Holliday junction resolvase EQI29_03725 PF06949 Protein of unknown function (DUF1292) EQI29_03740 PF03390 2-hydroxycarboxylate transporter family EQI29_03745 PF03949 Malic enzyme, NAD binding domain EQI29_03745 PF00390 Malic enzyme, N-terminal domain EQI29_03755 PF01070 FMN-dependent dehydrogenase EQI29_03795 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_03795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_03805 PF00005 ABC transporter EQI29_03835 PF00005 ABC transporter EQI29_03860 PF13673 Acetyltransferase (GNAT) domain EQI29_03870 PF01520 N-acetylmuramoyl-L-alanine amidase EQI29_03870 PF00395 S-layer homology domain EQI29_03875 PF01351 Ribonuclease HII EQI29_03875 PF11858 Domain of unknown function (DUF3378) EQI29_03895 PF01713 Smr domain EQI29_03895 PF00488 MutS domain V EQI29_03900 PF00085 Thioredoxin EQI29_03905 PF02151 UvrB/uvrC motif EQI29_03905 PF08459 UvrC Helix-hairpin-helix N-terminal EQI29_03905 PF01541 GIY-YIG catalytic domain EQI29_03910 PF00005 ABC transporter EQI29_03910 PF13732 Domain of unknown function (DUF4162) EQI29_03920 PF06874 Firmicute fructose-1,6-bisphosphatase EQI29_03925 PF07722 Peptidase C26 EQI29_03935 PF01496 V-type ATPase 116kDa subunit family EQI29_03940 PF00137 ATP synthase subunit C EQI29_03950 PF01992 ATP synthase (C/AC39) subunit EQI29_03955 PF01990 ATP synthase (F/14-kDa) subunit EQI29_03960 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQI29_03960 PF16886 ATPsynthase alpha/beta subunit N-term extension EQI29_03960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQI29_03965 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQI29_03965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQI29_03970 PF01813 ATP synthase subunit D EQI29_03975 PF02386 Cation transport protein EQI29_03980 PF00155 Aminotransferase class I and II EQI29_03980 PF00392 Bacterial regulatory proteins, gntR family EQI29_03985 PF02423 Ornithine cyclodeaminase/mu-crystallin family EQI29_03990 PF02567 Phenazine biosynthesis-like protein EQI29_03995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EQI29_04000 PF00293 NUDIX domain EQI29_04010 PF01966 HD domain EQI29_04015 PF03099 Biotin/lipoate A/B protein ligase family EQI29_04025 PF05066 HB1, ASXL, restriction endonuclease HTH domain EQI29_04030 PF08281 Sigma-70, region 4 EQI29_04030 PF04542 Sigma-70 region 2 EQI29_04035 PF11738 Protein of unknown function (DUF3298) EQI29_04035 PF13739 Deacetylase PdaC EQI29_04040 PF01522 Polysaccharide deacetylase EQI29_04050 PF04963 Sigma-54 factor, core binding domain EQI29_04050 PF04552 Sigma-54, DNA binding domain EQI29_04050 PF00309 Sigma-54 factor, Activator interacting domain (AID) EQI29_04055 PF04198 Putative sugar-binding domain EQI29_04060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EQI29_04060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EQI29_04065 PF00162 Phosphoglycerate kinase EQI29_04070 PF00121 Triosephosphate isomerase EQI29_04075 PF03952 Enolase, N-terminal domain EQI29_04075 PF00113 Enolase, C-terminal TIM barrel domain EQI29_04085 PF07687 Peptidase dimerisation domain EQI29_04085 PF01546 Peptidase family M20/M25/M40 EQI29_04095 PF01156 Inosine-uridine preferring nucleoside hydrolase EQI29_04105 PF14542 GCN5-related N-acetyl-transferase EQI29_04110 PF03840 Preprotein translocase SecG subunit EQI29_04120 PF00575 S1 RNA binding domain EQI29_04120 PF17876 Cold shock domain EQI29_04120 PF00773 RNB domain EQI29_04120 PF08206 Ribonuclease B OB domain EQI29_04125 PF01668 SmpB protein EQI29_04130 PF00119 ATP synthase A chain EQI29_04135 PF00137 ATP synthase subunit C EQI29_04140 PF00430 ATP synthase B/B' CF(0) EQI29_04145 PF00213 ATP synthase delta (OSCP) subunit EQI29_04150 PF00306 ATP synthase alpha/beta chain, C terminal domain EQI29_04150 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQI29_04150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQI29_04155 PF00231 ATP synthase EQI29_04160 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQI29_04160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQI29_04165 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EQI29_04165 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EQI29_04175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EQI29_04185 PF01809 Putative membrane protein insertion efficiency factor EQI29_04195 PF00480 ROK family EQI29_04220 PF09186 Domain of unknown function (DUF1949) EQI29_04220 PF01205 Uncharacterized protein family UPF0029 EQI29_04230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_04235 PF04851 Type III restriction enzyme, res subunit EQI29_04235 PF00271 Helicase conserved C-terminal domain EQI29_04245 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EQI29_04245 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EQI29_04250 PF02810 SEC-C motif EQI29_04250 PF01043 SecA preprotein cross-linking domain EQI29_04250 PF07516 SecA Wing and Scaffold domain EQI29_04250 PF07517 SecA DEAD-like domain EQI29_04260 PF00005 ABC transporter EQI29_04265 PF18075 FtsX extracellular domain EQI29_04265 PF02687 FtsX-like permease family EQI29_04270 PF13396 Phospholipase_D-nuclease N-terminal EQI29_04270 PF13091 PLD-like domain EQI29_04275 PF12849 PBP superfamily domain EQI29_04280 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_04285 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_04290 PF00005 ABC transporter EQI29_04295 PF00005 ABC transporter EQI29_04300 PF01895 PhoU domain EQI29_04325 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV EQI29_04330 PF02603 HPr Serine kinase N terminus EQI29_04330 PF07475 HPr Serine kinase C-terminal domain EQI29_04335 PF01790 Prolipoprotein diacylglyceryl transferase EQI29_04340 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EQI29_04340 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EQI29_04345 PF00483 Nucleotidyl transferase EQI29_04355 PF12732 YtxH-like protein EQI29_04360 PF00557 Metallopeptidase family M24 EQI29_04360 PF01321 Creatinase/Prolidase N-terminal domain EQI29_04365 PF00356 Bacterial regulatory proteins, lacI family EQI29_04390 PF00905 Penicillin binding protein transpeptidase domain EQI29_04390 PF00912 Transglycosylase EQI29_04395 PF01261 Xylose isomerase-like TIM barrel EQI29_04405 PF01566 Natural resistance-associated macrophage protein EQI29_04415 PF03672 Uncharacterised protein family (UPF0154) EQI29_04420 PF00664 ABC transporter transmembrane region EQI29_04420 PF00005 ABC transporter EQI29_04425 PF00005 ABC transporter EQI29_04425 PF00664 ABC transporter transmembrane region EQI29_04440 PF00367 phosphotransferase system, EIIB EQI29_04440 PF02378 Phosphotransferase system, EIIC EQI29_04440 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_04445 PF01380 SIS domain EQI29_04445 PF01418 Helix-turn-helix domain, rpiR family EQI29_04460 PF00232 Glycosyl hydrolase family 1 EQI29_04465 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_04470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EQI29_04470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EQI29_04470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EQI29_04470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EQI29_04475 PF01022 Bacterial regulatory protein, arsR family EQI29_04480 PF03618 Kinase/pyrophosphorylase EQI29_04485 PF01475 Ferric uptake regulator family EQI29_04490 PF01165 Ribosomal protein S21 EQI29_04495 PF09424 Yqey-like protein EQI29_04500 PF05525 Branched-chain amino acid transport protein EQI29_04505 PF02562 PhoH-like protein EQI29_04510 PF07698 7TM receptor with intracellular HD hydrolase EQI29_04510 PF07697 7TM-HD extracellular EQI29_04510 PF01966 HD domain EQI29_04515 PF02130 Uncharacterized protein family UPF0054 EQI29_04520 PF01219 Prokaryotic diacylglycerol kinase EQI29_04525 PF07650 KH domain EQI29_04525 PF01926 50S ribosome-binding GTPase EQI29_04530 PF11967 Recombination protein O N terminal EQI29_04530 PF02565 Recombination protein O C terminal EQI29_04535 PF02091 Glycyl-tRNA synthetase alpha subunit EQI29_04540 PF02092 Glycyl-tRNA synthetase beta subunit EQI29_04540 PF05746 DALR anticodon binding domain EQI29_04550 PF03816 Cell envelope-related transcriptional attenuator domain EQI29_04555 PF02706 Chain length determinant protein EQI29_04555 PF13807 G-rich domain on putative tyrosine kinase EQI29_04560 PF13614 AAA domain EQI29_04570 PF02719 Polysaccharide biosynthesis protein EQI29_04575 PF02397 Bacterial sugar transferase EQI29_04590 PF02719 Polysaccharide biosynthesis protein EQI29_04590 PF08485 Polysaccharide biosynthesis protein C-terminal EQI29_04595 PF01370 NAD dependent epimerase/dehydratase family EQI29_04600 PF02350 UDP-N-acetylglucosamine 2-epimerase EQI29_04610 PF13439 Glycosyltransferase Family 4 EQI29_04610 PF00534 Glycosyl transferases group 1 EQI29_04615 PF11380 Stealth protein CR2, conserved region 2 EQI29_04615 PF17103 Stealth protein CR4, conserved region 4 EQI29_04615 PF17101 Stealth protein CR1, conserved region 1 EQI29_04625 PF02096 60Kd inner membrane protein EQI29_04635 PF00708 Acylphosphatase EQI29_04640 PF08032 RNA 2'-O ribose methyltransferase substrate binding EQI29_04640 PF00588 SpoU rRNA Methylase family EQI29_04660 PF00654 Voltage gated chloride channel EQI29_04670 PF00768 D-alanyl-D-alanine carboxypeptidase EQI29_04670 PF07943 Penicillin-binding protein 5, C-terminal domain EQI29_04685 PF00313 'Cold-shock' DNA-binding domain EQI29_04690 PF13307 Helicase C-terminal domain EQI29_04690 PF04851 Type III restriction enzyme, res subunit EQI29_04690 PF00929 Exonuclease EQI29_04700 PF00155 Aminotransferase class I and II EQI29_04705 PF01336 OB-fold nucleic acid binding domain EQI29_04705 PF00152 tRNA synthetases class II (D, K and N) EQI29_04720 PF13472 GDSL-like Lipase/Acylhydrolase family EQI29_04735 PF04199 Putative cyclase EQI29_04740 PF00403 Heavy-metal-associated domain EQI29_04745 PF13520 Amino acid permease EQI29_04760 PF03965 Penicillinase repressor EQI29_04765 PF00403 Heavy-metal-associated domain EQI29_04770 PF00403 Heavy-metal-associated domain EQI29_04780 PF13559 Domain of unknown function (DUF4129) EQI29_04780 PF01841 Transglutaminase-like superfamily EQI29_04780 PF11992 Domain of unknown function (DUF3488) EQI29_04795 PF07726 ATPase family associated with various cellular activities (AAA) EQI29_04795 PF17863 AAA lid domain EQI29_04820 PF12849 PBP superfamily domain EQI29_04830 PF03577 Peptidase family C69 EQI29_04835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_04835 PF00512 His Kinase A (phospho-acceptor) domain EQI29_04835 PF16736 Single Cache-like EQI29_04835 PF00989 PAS fold EQI29_04840 PF00072 Response regulator receiver domain EQI29_04840 PF00486 Transcriptional regulatory protein, C terminal EQI29_04845 PF04463 Protein of unknown function (DUF523) EQI29_04850 PF04297 Putative helix-turn-helix protein, YlxM / p13 like EQI29_04855 PF02978 Signal peptide binding domain EQI29_04855 PF02881 SRP54-type protein, helical bundle domain EQI29_04855 PF00448 SRP54-type protein, GTPase domain EQI29_04860 PF13673 Acetyltransferase (GNAT) domain EQI29_04860 PF13302 Acetyltransferase (GNAT) domain EQI29_04860 PF03352 Methyladenine glycosylase EQI29_04860 PF00117 Glutamine amidotransferase class-I EQI29_04860 PF00958 GMP synthase C terminal domain EQI29_04865 PF01872 RibD C-terminal domain EQI29_04870 PF03358 NADPH-dependent FMN reductase EQI29_04875 PF01381 Helix-turn-helix EQI29_04885 PF13732 Domain of unknown function (DUF4162) EQI29_04885 PF00005 ABC transporter EQI29_04895 PF00886 Ribosomal protein S16 EQI29_04910 PF01782 RimM N-terminal domain EQI29_04910 PF05239 PRC-barrel domain EQI29_04915 PF01746 tRNA (Guanine-1)-methyltransferase EQI29_04920 PF01245 Ribosomal protein L19 EQI29_04995 PF07690 Major Facilitator Superfamily EQI29_05010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EQI29_05010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EQI29_05010 PF00205 Thiamine pyrophosphate enzyme, central domain EQI29_05015 PF03306 Alpha-acetolactate decarboxylase EQI29_05020 PF13185 GAF domain EQI29_05040 PF00589 Phage integrase family EQI29_05040 PF02899 Phage integrase, N-terminal SAM-like domain EQI29_05080 PF01381 Helix-turn-helix EQI29_05195 PF02368 Bacterial Ig-like domain (group 2) EQI29_05325 PF00072 Response regulator receiver domain EQI29_05325 PF00486 Transcriptional regulatory protein, C terminal EQI29_05330 PF00512 His Kinase A (phospho-acceptor) domain EQI29_05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_05330 PF00672 HAMP domain EQI29_05345 PF00884 Sulfatase EQI29_05350 PF17785 PUA-like domain EQI29_05350 PF10672 S-adenosylmethionine-dependent methyltransferase EQI29_05355 PF01487 Type I 3-dehydroquinase EQI29_05360 PF04073 Aminoacyl-tRNA editing domain EQI29_05370 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EQI29_05370 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EQI29_05375 PF00342 Phosphoglucose isomerase EQI29_05395 PF01381 Helix-turn-helix EQI29_05435 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family EQI29_05465 PF03009 Glycerophosphoryl diester phosphodiesterase family EQI29_05475 PF02627 Carboxymuconolactone decarboxylase family EQI29_05495 PF00440 Bacterial regulatory proteins, tetR family EQI29_05495 PF08359 YsiA-like protein, C-terminal region EQI29_05510 PF13537 Glutamine amidotransferase domain EQI29_05510 PF00733 Asparagine synthase EQI29_05515 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) EQI29_05520 PF00471 Ribosomal protein L33 EQI29_05525 PF00186 Dihydrofolate reductase EQI29_05535 PF00005 ABC transporter EQI29_05540 PF01032 FecCD transport family EQI29_05545 PF01032 FecCD transport family EQI29_05550 PF01812 5-formyltetrahydrofolate cyclo-ligase family EQI29_05565 PF00480 ROK family EQI29_05570 PF00581 Rhodanese-like domain EQI29_05575 PF04343 Protein of unknown function, DUF488 EQI29_05590 PF16363 GDP-mannose 4,6 dehydratase EQI29_05595 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EQI29_05595 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EQI29_05600 PF00356 Bacterial regulatory proteins, lacI family EQI29_05605 PF00814 Glycoprotease family EQI29_05610 PF00583 Acetyltransferase (GNAT) family EQI29_05615 PF00583 Acetyltransferase (GNAT) family EQI29_05620 PF00814 Glycoprotease family EQI29_05625 PF13614 AAA domain EQI29_05630 PF00027 Cyclic nucleotide-binding domain EQI29_05630 PF13545 Crp-like helix-turn-helix domain EQI29_05640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EQI29_05640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EQI29_05645 PF00696 Amino acid kinase family EQI29_05650 PF03485 Arginyl tRNA synthetase N terminal domain EQI29_05650 PF05746 DALR anticodon binding domain EQI29_05650 PF00750 tRNA synthetases class I (R) EQI29_05660 PF00266 Aminotransferase class-V EQI29_05665 PF01316 Arginine repressor, DNA binding domain EQI29_05665 PF02863 Arginine repressor, C-terminal domain EQI29_05670 PF00318 Ribosomal protein S2 EQI29_05675 PF00889 Elongation factor TS EQI29_05680 PF00696 Amino acid kinase family EQI29_05685 PF01765 Ribosome recycling factor EQI29_05690 PF01255 Putative undecaprenyl diphosphate synthase EQI29_05700 PF02163 Peptidase family M50 EQI29_05700 PF17820 PDZ domain EQI29_05705 PF04073 Aminoacyl-tRNA editing domain EQI29_05705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EQI29_05705 PF03129 Anticodon binding domain EQI29_05710 PF11490 DNA polymerase III polC-type N-terminus II EQI29_05710 PF14579 Helix-hairpin-helix motif EQI29_05710 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EQI29_05710 PF07733 Bacterial DNA polymerase III alpha NTPase domain EQI29_05710 PF00929 Exonuclease EQI29_05710 PF14480 DNA polymerase III polC-type N-terminus I EQI29_05710 PF02811 PHP domain EQI29_05715 PF17384 RimP C-terminal SH3 domain EQI29_05715 PF02576 RimP N-terminal domain EQI29_05720 PF00575 S1 RNA binding domain EQI29_05720 PF13184 NusA-like KH domain EQI29_05720 PF08529 NusA N-terminal domain EQI29_05725 PF04296 Protein of unknown function (DUF448) EQI29_05730 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family EQI29_05735 PF00009 Elongation factor Tu GTP binding domain EQI29_05735 PF11987 Translation-initiation factor 2 EQI29_05735 PF04760 Translation initiation factor IF-2, N-terminal region EQI29_05740 PF02033 Ribosome-binding factor A EQI29_05745 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_05750 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase EQI29_05750 PF09363 XFP C-terminal domain EQI29_05750 PF09364 XFP N-terminal domain EQI29_05755 PF01509 TruB family pseudouridylate synthase (N terminal domain) EQI29_05755 PF16198 tRNA pseudouridylate synthase B C-terminal domain EQI29_05760 PF01687 Riboflavin kinase EQI29_05760 PF06574 FAD synthetase EQI29_05770 PF06800 Sugar transport protein EQI29_05775 PF12728 Helix-turn-helix domain EQI29_05780 PF08818 Domain of unknown function (DU1801) EQI29_05790 PF17676 LD-carboxypeptidase C-terminal domain EQI29_05790 PF02016 LD-carboxypeptidase N-terminal domain EQI29_05810 PF02056 Family 4 glycosyl hydrolase EQI29_05810 PF11975 Family 4 glycosyl hydrolase C-terminal domain EQI29_05825 PF01965 DJ-1/PfpI family EQI29_05870 PF06969 HemN C-terminal domain EQI29_05870 PF04055 Radical SAM superfamily EQI29_05875 PF01628 HrcA protein C terminal domain EQI29_05880 PF01025 GrpE EQI29_05885 PF00012 Hsp70 protein EQI29_05890 PF00226 DnaJ domain EQI29_05890 PF00684 DnaJ central domain EQI29_05890 PF01556 DnaJ C terminal domain EQI29_05895 PF00005 ABC transporter EQI29_05905 PF00005 ABC transporter EQI29_05910 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_05920 PF17757 UvrB interaction domain EQI29_05920 PF12344 Ultra-violet resistance protein B EQI29_05920 PF04851 Type III restriction enzyme, res subunit EQI29_05920 PF00271 Helicase conserved C-terminal domain EQI29_05920 PF02151 UvrB/uvrC motif EQI29_05925 PF17755 UvrA DNA-binding domain EQI29_05925 PF00005 ABC transporter EQI29_05925 PF17760 UvrA interaction domain EQI29_05935 PF01177 Asp/Glu/Hydantoin racemase EQI29_05940 PF03668 P-loop ATPase protein family EQI29_05945 PF01933 Uncharacterised protein family UPF0052 EQI29_05950 PF14527 WhiA LAGLIDADG-like domain EQI29_05950 PF10298 WhiA N-terminal LAGLIDADG-like domain EQI29_05950 PF02650 WhiA C-terminal HTH domain EQI29_05955 PF17760 UvrA interaction domain EQI29_05955 PF17755 UvrA DNA-binding domain EQI29_05965 PF10371 Domain of unknown function EQI29_05965 PF12838 4Fe-4S dicluster domain EQI29_05965 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EQI29_05965 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EQI29_05965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EQI29_05965 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EQI29_05970 PF02457 DisA bacterial checkpoint controller nucleotide-binding EQI29_05980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EQI29_05980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EQI29_05980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EQI29_05980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EQI29_06010 PF01380 SIS domain EQI29_06025 PF01343 Peptidase family S49 EQI29_06030 PF06271 RDD family EQI29_06040 PF05697 Bacterial trigger factor protein (TF) EQI29_06040 PF05698 Bacterial trigger factor protein (TF) C-terminus EQI29_06040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EQI29_06045 PF07724 AAA domain (Cdc48 subfamily) EQI29_06045 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_06045 PF06689 ClpX C4-type zinc finger EQI29_06050 PF01926 50S ribosome-binding GTPase EQI29_06065 PF00455 DeoR C terminal sensor domain EQI29_06065 PF08220 DeoR-like helix-turn-helix domain EQI29_06070 PF00294 pfkB family carbohydrate kinase EQI29_06075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_06075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_06080 PF00654 Voltage gated chloride channel EQI29_06085 PF00580 UvrD/REP helicase N-terminal domain EQI29_06085 PF13361 UvrD-like helicase C-terminal domain EQI29_06090 PF00533 BRCA1 C Terminus (BRCT) domain EQI29_06090 PF12826 Helix-hairpin-helix motif EQI29_06090 PF01653 NAD-dependent DNA ligase adenylation domain EQI29_06090 PF03120 NAD-dependent DNA ligase OB-fold domain EQI29_06090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EQI29_06095 PF02686 Glu-tRNAGln amidotransferase C subunit EQI29_06100 PF01425 Amidase EQI29_06105 PF02934 GatB/GatE catalytic domain EQI29_06105 PF02637 GatB domain EQI29_06110 PF00781 Diacylglycerol kinase catalytic domain EQI29_06115 PF05958 tRNA (Uracil-5-)-methyltransferase EQI29_06125 PF00005 ABC transporter EQI29_06125 PF00664 ABC transporter transmembrane region EQI29_06130 PF00005 ABC transporter EQI29_06130 PF00664 ABC transporter transmembrane region EQI29_06135 PF06445 GyrI-like small molecule binding domain EQI29_06135 PF13411 MerR HTH family regulatory protein EQI29_06140 PF01717 Cobalamin-independent synthase, Catalytic domain EQI29_06145 PF07859 alpha/beta hydrolase fold EQI29_06155 PF16874 Glycosyl hydrolase family 36 C-terminal domain EQI29_06155 PF16875 Glycosyl hydrolase family 36 N-terminal domain EQI29_06160 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EQI29_06160 PF00703 Glycosyl hydrolases family 2 EQI29_06160 PF02837 Glycosyl hydrolases family 2, sugar binding domain EQI29_06165 PF02929 Beta galactosidase small chain EQI29_06175 PF00793 DAHP synthetase I family EQI29_06175 PF18152 DAHP synthase ferredoxin-like domain EQI29_06180 PF01761 3-dehydroquinate synthase EQI29_06185 PF01264 Chorismate synthase EQI29_06190 PF01842 ACT domain EQI29_06190 PF02153 Prephenate dehydrogenase EQI29_06195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EQI29_06200 PF01202 Shikimate kinase EQI29_06205 PF00800 Prephenate dehydratase EQI29_06210 PF00672 HAMP domain EQI29_06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_06210 PF02743 Cache domain EQI29_06210 PF06580 Histidine kinase EQI29_06215 PF12833 Helix-turn-helix domain EQI29_06215 PF00072 Response regulator receiver domain EQI29_06220 PF13416 Bacterial extracellular solute-binding protein EQI29_06225 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_06230 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_06235 PF07556 Protein of unknown function (DUF1538) EQI29_06240 PF07556 Protein of unknown function (DUF1538) EQI29_06260 PF00300 Histidine phosphatase superfamily (branch 1) EQI29_06265 PF13419 Haloacid dehalogenase-like hydrolase EQI29_06275 PF00375 Sodium:dicarboxylate symporter family EQI29_06295 PF16921 Tex protein YqgF-like domain EQI29_06295 PF09371 Tex-like protein N-terminal domain EQI29_06295 PF17674 HHH domain EQI29_06295 PF00575 S1 RNA binding domain EQI29_06300 PF10263 SprT-like family EQI29_06305 PF02698 DUF218 domain EQI29_06310 PF08245 Mur ligase middle domain EQI29_06310 PF02875 Mur ligase family, glutamate ligase domain EQI29_06310 PF01225 Mur ligase family, catalytic domain EQI29_06320 PF01027 Inhibitor of apoptosis-promoting Bax1 EQI29_06325 PF00476 DNA polymerase family A EQI29_06325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EQI29_06325 PF01367 5'-3' exonuclease, C-terminal SAM fold EQI29_06330 PF06827 Zinc finger found in FPG and IleRS EQI29_06330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EQI29_06330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EQI29_06335 PF01121 Dephospho-CoA kinase EQI29_06345 PF03477 ATP cone domain EQI29_06355 PF01695 IstB-like ATP binding protein EQI29_06355 PF07319 Primosomal protein DnaI N-terminus EQI29_06365 PF04816 tRNA (adenine(22)-N(1))-methyltransferase EQI29_06370 PF01784 NIF3 (NGG1p interacting factor 3) EQI29_06375 PF01546 Peptidase family M20/M25/M40 EQI29_06375 PF07687 Peptidase dimerisation domain EQI29_06380 PF00781 Diacylglycerol kinase catalytic domain EQI29_06395 PF07724 AAA domain (Cdc48 subfamily) EQI29_06395 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_06395 PF17871 AAA lid domain EQI29_06395 PF02861 Clp amino terminal domain, pathogenicity island component EQI29_06395 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_06415 PF06421 GTP-binding protein LepA C-terminus EQI29_06415 PF00009 Elongation factor Tu GTP binding domain EQI29_06415 PF03144 Elongation factor Tu domain 2 EQI29_06415 PF00679 Elongation factor G C-terminus EQI29_06440 PF00313 'Cold-shock' DNA-binding domain EQI29_06445 PF01022 Bacterial regulatory protein, arsR family EQI29_06465 PF05857 TraX protein EQI29_06500 PF03009 Glycerophosphoryl diester phosphodiesterase family EQI29_06505 PF13145 PPIC-type PPIASE domain EQI29_06520 PF03960 ArsC family EQI29_06530 PF12146 Serine aminopeptidase, S33 EQI29_06535 PF00135 Carboxylesterase family EQI29_06545 PF02525 Flavodoxin-like fold EQI29_06550 PF00313 'Cold-shock' DNA-binding domain EQI29_06565 PF01381 Helix-turn-helix EQI29_06595 PF01501 Glycosyl transferase family 8 EQI29_06600 PF01501 Glycosyl transferase family 8 EQI29_06630 PF03780 Asp23 family, cell envelope-related function EQI29_06635 PF04226 Transglycosylase associated protein EQI29_06660 PF13443 Cro/C1-type HTH DNA-binding domain EQI29_06665 PF11188 Protein of unknown function (DUF2975) EQI29_06675 PF00072 Response regulator receiver domain EQI29_06675 PF04397 LytTr DNA-binding domain EQI29_06680 PF04647 Accessory gene regulator B EQI29_06705 PF03780 Asp23 family, cell envelope-related function EQI29_06710 PF04226 Transglycosylase associated protein EQI29_06720 PF00909 Ammonium Transporter Family EQI29_06735 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase EQI29_06740 PF01613 Flavin reductase like domain EQI29_06750 PF01098 Cell cycle protein EQI29_06755 PF03816 Cell envelope-related transcriptional attenuator domain EQI29_06760 PF03717 Penicillin-binding Protein dimerisation domain EQI29_06760 PF00905 Penicillin binding protein transpeptidase domain EQI29_06760 PF05223 NTF2-like N-terminal transpeptidase domain EQI29_06765 PF00999 Sodium/hydrogen exchanger family EQI29_06790 PF00578 AhpC/TSA family EQI29_06805 PF03786 D-mannonate dehydratase (UxuA) EQI29_06820 PF01594 AI-2E family transporter EQI29_06825 PF01047 MarR family EQI29_06830 PF02566 OsmC-like protein EQI29_06840 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQI29_06840 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQI29_06845 PF00128 Alpha amylase, catalytic domain EQI29_06845 PF02903 Alpha amylase, N-terminal ig-like domain EQI29_06850 PF13416 Bacterial extracellular solute-binding protein EQI29_06855 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_06860 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_06880 PF01180 Dihydroorotate dehydrogenase EQI29_06885 PF01425 Amidase EQI29_06890 PF00497 Bacterial extracellular solute-binding proteins, family 3 EQI29_06895 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_06915 PF00625 Guanylate kinase EQI29_06920 PF07662 Na+ dependent nucleoside transporter C-terminus EQI29_06920 PF01773 Na+ dependent nucleoside transporter N-terminus EQI29_06925 PF08903 Domain of unknown function (DUF1846) EQI29_06975 PF01943 Polysaccharide biosynthesis protein EQI29_06975 PF14667 Polysaccharide biosynthesis C-terminal domain EQI29_06980 PF02645 Uncharacterised protein, DegV family COG1307 EQI29_06995 PF00128 Alpha amylase, catalytic domain EQI29_06995 PF16657 Maltogenic Amylase, C-terminal domain EQI29_07000 PF04260 Protein of unknown function (DUF436) EQI29_07010 PF08543 Phosphomethylpyrimidine kinase EQI29_07045 PF11181 Heat induced stress protein YflT EQI29_07045 PF09557 Domain of unknown function (DUF2382) EQI29_07050 PF00512 His Kinase A (phospho-acceptor) domain EQI29_07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_07055 PF00072 Response regulator receiver domain EQI29_07055 PF00486 Transcriptional regulatory protein, C terminal EQI29_07065 PF00005 ABC transporter EQI29_07095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_07095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_07095 PF00874 PRD domain EQI29_07095 PF05043 Mga helix-turn-helix domain EQI29_07095 PF08279 HTH domain EQI29_07105 PF03611 PTS system sugar-specific permease component EQI29_07125 PF00056 lactate/malate dehydrogenase, NAD binding domain EQI29_07125 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EQI29_07145 PF01751 Toprim domain EQI29_07145 PF01131 DNA topoisomerase EQI29_07155 PF03816 Cell envelope-related transcriptional attenuator domain EQI29_07160 PF08501 Shikimate dehydrogenase substrate binding domain EQI29_07160 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EQI29_07165 PF00005 ABC transporter EQI29_07170 PF02653 Branched-chain amino acid transport system / permease component EQI29_07195 PF03466 LysR substrate binding domain EQI29_07195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EQI29_07225 PF01380 SIS domain EQI29_07230 PF03613 PTS system mannose/fructose/sorbose family IID component EQI29_07235 PF03609 PTS system sorbose-specific iic component EQI29_07240 PF03830 PTS system sorbose subfamily IIB component EQI29_07250 PF00156 Phosphoribosyl transferase domain EQI29_07255 PF01180 Dihydroorotate dehydrogenase EQI29_07260 PF00970 Oxidoreductase FAD-binding domain EQI29_07260 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B EQI29_07265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EQI29_07265 PF02142 MGS-like domain EQI29_07265 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EQI29_07270 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EQI29_07270 PF00117 Glutamine amidotransferase class-I EQI29_07275 PF01979 Amidohydrolase family EQI29_07280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EQI29_07280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EQI29_07285 PF00860 Permease family EQI29_07290 PF00156 Phosphoribosyl transferase domain EQI29_07295 PF01479 S4 domain EQI29_07295 PF00849 RNA pseudouridylate synthase EQI29_07300 PF01252 Signal peptidase (SPase) II EQI29_07315 PF01268 Formate--tetrahydrofolate ligase EQI29_07320 PF00313 'Cold-shock' DNA-binding domain EQI29_07325 PF17255 EbsA-like protein EQI29_07330 PF13456 Reverse transcriptase-like EQI29_07335 PF16916 Dimerisation domain of Zinc Transporter EQI29_07335 PF01545 Cation efflux family EQI29_07340 PF12822 ECF transporter, substrate-specific component EQI29_07345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EQI29_07345 PF01411 tRNA synthetases class II (A) EQI29_07345 PF02272 DHHA1 domain EQI29_07355 PF00270 DEAD/DEAH box helicase EQI29_07355 PF00271 Helicase conserved C-terminal domain EQI29_07370 PF03806 AbgT putative transporter family EQI29_07375 PF01546 Peptidase family M20/M25/M40 EQI29_07380 PF13520 Amino acid permease EQI29_07385 PF01370 NAD dependent epimerase/dehydratase family EQI29_07390 PF00155 Aminotransferase class I and II EQI29_07400 PF01966 HD domain EQI29_07405 PF02074 Carboxypeptidase Taq (M32) metallopeptidase EQI29_07410 PF02926 THUMP domain EQI29_07410 PF01170 Putative RNA methylase family UPF0020 EQI29_07420 PF05103 DivIVA protein EQI29_07425 PF06908 YspA SLOG family EQI29_07430 PF03838 Recombination protein U EQI29_07435 PF00905 Penicillin binding protein transpeptidase domain EQI29_07435 PF00912 Transglycosylase EQI29_07440 PF10576 Iron-sulfur binding domain of endonuclease III EQI29_07440 PF00633 Helix-hairpin-helix motif EQI29_07440 PF00730 HhH-GPD superfamily base excision DNA repair protein EQI29_07445 PF07261 Replication initiation and membrane attachment EQI29_07465 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_07465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_07470 PF01475 Ferric uptake regulator family EQI29_07475 PF00291 Pyridoxal-phosphate dependent enzyme EQI29_07480 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EQI29_07480 PF01476 LysM domain EQI29_07485 PF02780 Transketolase, C-terminal domain EQI29_07485 PF02779 Transketolase, pyrimidine binding domain EQI29_07485 PF00456 Transketolase, thiamine diphosphate binding domain EQI29_07490 PF05979 Bacterial protein of unknown function (DUF896) EQI29_07495 PF00717 Peptidase S24-like EQI29_07495 PF01726 LexA DNA binding domain EQI29_07505 PF00156 Phosphoribosyl transferase domain EQI29_07510 PF02272 DHHA1 domain EQI29_07510 PF01368 DHH family EQI29_07510 PF10141 Single-strand DNA-specific exonuclease, C terminal domain EQI29_07510 PF17768 RecJ OB domain EQI29_07515 PF06305 Lipopolysaccharide assembly protein A domain EQI29_07520 PF00106 short chain dehydrogenase EQI29_07525 PF00753 Metallo-beta-lactamase superfamily EQI29_07525 PF12706 Beta-lactamase superfamily domain EQI29_07535 PF01926 50S ribosome-binding GTPase EQI29_07535 PF01018 GTP1/OBG EQI29_07535 PF09269 Domain of unknown function (DUF1967) EQI29_07540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EQI29_07540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EQI29_07560 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EQI29_07565 PF07977 FabA-like domain EQI29_07575 PF01063 Amino-transferase class IV EQI29_07580 PF00924 Mechanosensitive ion channel EQI29_07605 PF01138 3' exoribonuclease family, domain 1 EQI29_07605 PF03725 3' exoribonuclease family, domain 2 EQI29_07610 PF01177 Asp/Glu/Hydantoin racemase EQI29_07615 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_07620 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 EQI29_07630 PF00005 ABC transporter EQI29_07635 PF00579 tRNA synthetases class I (W and Y) EQI29_07640 PF01588 Putative tRNA binding domain EQI29_07640 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EQI29_07640 PF03483 B3/4 domain EQI29_07640 PF03147 Ferredoxin-fold anticodon binding domain EQI29_07640 PF03484 tRNA synthetase B5 domain EQI29_07645 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EQI29_07645 PF01409 tRNA synthetases class II core domain (F) EQI29_07650 PF01638 HxlR-like helix-turn-helix EQI29_07655 PF12705 PD-(D/E)XK nuclease superfamily EQI29_07655 PF00580 UvrD/REP helicase N-terminal domain EQI29_07655 PF13361 UvrD-like helicase C-terminal domain EQI29_07660 PF12705 PD-(D/E)XK nuclease superfamily EQI29_07665 PF00854 POT family EQI29_07685 PF00872 Transposase, Mutator family EQI29_07690 PF13529 Peptidase_C39 like family EQI29_07750 PF01476 LysM domain EQI29_07750 PF05257 CHAP domain EQI29_07770 PF01883 Iron-sulfur cluster assembly protein EQI29_07775 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQI29_07775 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQI29_07780 PF04461 Protein of unknown function (DUF520) EQI29_07790 PF00753 Metallo-beta-lactamase superfamily EQI29_07800 PF02673 Bacitracin resistance protein BacA EQI29_07810 PF04284 Protein of unknown function (DUF441) EQI29_07820 PF01649 Ribosomal protein S20 EQI29_07825 PF06144 DNA polymerase III, delta subunit EQI29_07830 PF13567 Domain of unknown function (DUF4131) EQI29_07830 PF00753 Metallo-beta-lactamase superfamily EQI29_07830 PF03772 Competence protein EQI29_07835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EQI29_07840 PF10531 SLBB domain EQI29_07845 PF05362 Lon protease (S16) C-terminal proteolytic domain EQI29_07845 PF13180 PDZ domain EQI29_07850 PF01467 Cytidylyltransferase-like EQI29_07860 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) EQI29_07875 PF00682 HMGL-like EQI29_07875 PF00364 Biotin-requiring enzyme EQI29_07875 PF00289 Biotin carboxylase, N-terminal domain EQI29_07875 PF02436 Conserved carboxylase domain EQI29_07875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EQI29_07875 PF02785 Biotin carboxylase C-terminal domain EQI29_07880 PF01098 Cell cycle protein EQI29_07885 PF07408 Protein of unknown function (DUF1507) EQI29_07890 PF16124 RecQ zinc-binding EQI29_07890 PF00270 DEAD/DEAH box helicase EQI29_07890 PF00271 Helicase conserved C-terminal domain EQI29_07890 PF00570 HRDC domain EQI29_07890 PF09382 RQC domain EQI29_07900 PF00459 Inositol monophosphatase family EQI29_07905 PF05256 Uncharacterised protein family (UPF0223) EQI29_07910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_07910 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_07915 PF02817 e3 binding domain EQI29_07915 PF00364 Biotin-requiring enzyme EQI29_07915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EQI29_07920 PF02780 Transketolase, C-terminal domain EQI29_07920 PF02779 Transketolase, pyrimidine binding domain EQI29_07925 PF00676 Dehydrogenase E1 component EQI29_07935 PF00392 Bacterial regulatory proteins, gntR family EQI29_07935 PF00155 Aminotransferase class I and II EQI29_07940 PF00478 IMP dehydrogenase / GMP reductase domain EQI29_07945 PF02653 Branched-chain amino acid transport system / permease component EQI29_07950 PF00005 ABC transporter EQI29_07965 PF02743 Cache domain EQI29_07965 PF00672 HAMP domain EQI29_07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_07965 PF06580 Histidine kinase EQI29_07970 PF04397 LytTr DNA-binding domain EQI29_07970 PF00072 Response regulator receiver domain EQI29_07975 PF00248 Aldo/keto reductase family EQI29_07980 PF02844 Phosphoribosylglycinamide synthetase, N domain EQI29_07980 PF02843 Phosphoribosylglycinamide synthetase, C domain EQI29_07980 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EQI29_07985 PF02142 MGS-like domain EQI29_07985 PF01808 AICARFT/IMPCHase bienzyme EQI29_07990 PF00551 Formyl transferase EQI29_07995 PF02769 AIR synthase related protein, C-terminal domain EQI29_07995 PF00586 AIR synthase related protein, N-terminal domain EQI29_08000 PF13537 Glutamine amidotransferase domain EQI29_08000 PF00156 Phosphoribosyl transferase domain EQI29_08005 PF00586 AIR synthase related protein, N-terminal domain EQI29_08005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EQI29_08005 PF02769 AIR synthase related protein, C-terminal domain EQI29_08015 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase EQI29_08020 PF01259 SAICAR synthetase EQI29_08030 PF00206 Lyase EQI29_08030 PF10397 Adenylosuccinate lyase C-terminus EQI29_08035 PF02222 ATP-grasp domain EQI29_08035 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EQI29_08040 PF00731 AIR carboxylase EQI29_08050 PF00860 Permease family EQI29_08055 PF00156 Phosphoribosyl transferase domain EQI29_08060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EQI29_08060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EQI29_08070 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_08075 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_08080 PF13416 Bacterial extracellular solute-binding protein EQI29_08090 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EQI29_08090 PF01476 LysM domain EQI29_08095 PF02557 D-alanyl-D-alanine carboxypeptidase EQI29_08105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EQI29_08105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EQI29_08120 PF01145 SPFH domain / Band 7 family EQI29_08120 PF15975 Flotillin EQI29_08130 PF00989 PAS fold EQI29_08130 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EQI29_08130 PF17203 Single cache domain 3 EQI29_08130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_08135 PF00989 PAS fold EQI29_08135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_08135 PF17203 Single cache domain 3 EQI29_08135 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EQI29_08140 PF00072 Response regulator receiver domain EQI29_08155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQI29_08155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQI29_08165 PF01979 Amidohydrolase family EQI29_08175 PF00155 Aminotransferase class I and II EQI29_08200 PF01476 LysM domain EQI29_08200 PF05257 CHAP domain EQI29_08205 PF01026 TatD related DNase EQI29_08210 PF00005 ABC transporter EQI29_08220 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_08225 PF00403 Heavy-metal-associated domain EQI29_08225 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_08225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_08230 PF00571 CBS domain EQI29_08230 PF00005 ABC transporter EQI29_08235 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EQI29_08255 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQI29_08255 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQI29_08265 PF00356 Bacterial regulatory proteins, lacI family EQI29_08270 PF00326 Prolyl oligopeptidase family EQI29_08280 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQI29_08300 PF01368 DHH family EQI29_08300 PF02833 DHHA2 domain EQI29_08305 PF04055 Radical SAM superfamily EQI29_08310 PF02901 Pyruvate formate lyase-like EQI29_08310 PF01228 Glycine radical EQI29_08315 PF03989 DNA gyrase C-terminal domain, beta-propeller EQI29_08315 PF00521 DNA gyrase/topoisomerase IV, subunit A EQI29_08320 PF00986 DNA gyrase B subunit, carboxyl terminus EQI29_08320 PF00204 DNA gyrase B EQI29_08320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_08320 PF01751 Toprim domain EQI29_08325 PF13380 CoA binding domain EQI29_08330 PF02660 Glycerol-3-phosphate acyltransferase EQI29_08340 PF08222 CodY helix-turn-helix domain EQI29_08340 PF06018 CodY GAF-like domain EQI29_08345 PF07724 AAA domain (Cdc48 subfamily) EQI29_08345 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_08345 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_08350 PF00227 Proteasome subunit EQI29_08355 PF02899 Phage integrase, N-terminal SAM-like domain EQI29_08355 PF00589 Phage integrase family EQI29_08360 PF01134 Glucose inhibited division protein A EQI29_08365 PF01131 DNA topoisomerase EQI29_08365 PF01751 Toprim domain EQI29_08365 PF01396 Topoisomerase DNA binding C4 zinc finger EQI29_08370 PF02481 DNA recombination-mediator protein A EQI29_08370 PF18255 DNA processing protein A sterile alpha motif domain EQI29_08375 PF01351 Ribonuclease HII EQI29_08380 PF01926 50S ribosome-binding GTPase EQI29_08410 PF10502 Signal peptidase, peptidase S26 EQI29_08415 PF06855 YozE SAM-like fold EQI29_08420 PF01625 Peptide methionine sulfoxide reductase EQI29_08425 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) EQI29_08430 PF13472 GDSL-like Lipase/Acylhydrolase family EQI29_08435 PF02645 Uncharacterised protein, DegV family COG1307 EQI29_08440 PF03006 Haemolysin-III related EQI29_08445 PF00186 Dihydrofolate reductase EQI29_08450 PF00303 Thymidylate synthase EQI29_08455 PF16326 ABC transporter C-terminal domain EQI29_08455 PF12848 ABC transporter EQI29_08455 PF00005 ABC transporter EQI29_08460 PF00999 Sodium/hydrogen exchanger family EQI29_08475 PF13735 tRNA nucleotidyltransferase domain 2 putative EQI29_08475 PF12627 Probable RNA and SrmB- binding site of polymerase A EQI29_08475 PF01743 Poly A polymerase head domain EQI29_08480 PF03819 MazG nucleotide pyrophosphohydrolase domain EQI29_08485 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQI29_08485 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQI29_08490 PF08864 UPF0302 domain EQI29_08490 PF08858 IDEAL domain EQI29_08505 PF00216 Bacterial DNA-binding protein EQI29_08510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EQI29_08510 PF01926 50S ribosome-binding GTPase EQI29_08515 PF00575 S1 RNA binding domain EQI29_08520 PF02224 Cytidylate kinase EQI29_08530 PF00271 Helicase conserved C-terminal domain EQI29_08530 PF00270 DEAD/DEAH box helicase EQI29_08550 PF01546 Peptidase family M20/M25/M40 EQI29_08555 PF03606 C4-dicarboxylate anaerobic carrier EQI29_08560 PF12822 ECF transporter, substrate-specific component EQI29_08565 PF01479 S4 domain EQI29_08565 PF00849 RNA pseudouridylate synthase EQI29_08570 PF04079 Segregation and condensation complex subunit ScpB EQI29_08575 PF02616 Segregation and condensation protein ScpA EQI29_08585 PF02899 Phage integrase, N-terminal SAM-like domain EQI29_08585 PF00589 Phage integrase family EQI29_08590 PF01475 Ferric uptake regulator family EQI29_08595 PF17783 CvfB-like winged helix domain EQI29_08595 PF13509 S1 domain EQI29_08600 PF18708 MapZ extracellular C-terminal domain 2 EQI29_08600 PF18041 MapZ extracellular domain 1 EQI29_08605 PF04539 Sigma-70 region 3 EQI29_08605 PF04545 Sigma-70, region 4 EQI29_08605 PF04542 Sigma-70 region 2 EQI29_08605 PF00140 Sigma-70 factor, region 1.2 EQI29_08605 PF03979 Sigma-70 factor, region 1.1 EQI29_08610 PF08275 DNA primase catalytic core, N-terminal domain EQI29_08610 PF10410 DnaB-helicase binding domain of primase EQI29_08610 PF01807 CHC2 zinc finger EQI29_08630 PF00561 alpha/beta hydrolase fold EQI29_08635 PF03706 Lysylphosphatidylglycerol synthase TM region EQI29_08635 PF09924 Uncharacterised conserved protein (DUF2156) EQI29_08640 PF03143 Elongation factor Tu C-terminal domain EQI29_08640 PF03144 Elongation factor Tu domain 2 EQI29_08640 PF00009 Elongation factor Tu GTP binding domain EQI29_08655 PF00248 Aldo/keto reductase family EQI29_08670 PF00388 Phosphatidylinositol-specific phospholipase C, X domain EQI29_08680 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal EQI29_08680 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal EQI29_08685 PF05958 tRNA (Uracil-5-)-methyltransferase EQI29_08690 PF00690 Cation transporter/ATPase, N-terminus EQI29_08690 PF00689 Cation transporting ATPase, C-terminus EQI29_08695 PF13396 Phospholipase_D-nuclease N-terminal EQI29_08695 PF13091 PLD-like domain EQI29_08710 PF08543 Phosphomethylpyrimidine kinase EQI29_08720 PF03960 ArsC family EQI29_08730 PF03551 Transcriptional regulator PadR-like family EQI29_08735 PF00582 Universal stress protein family EQI29_08740 PF00232 Glycosyl hydrolase family 1 EQI29_08745 PF02378 Phosphotransferase system, EIIC EQI29_08750 PF00392 Bacterial regulatory proteins, gntR family EQI29_08750 PF07702 UTRA domain EQI29_08760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EQI29_08780 PF03611 PTS system sugar-specific permease component EQI29_08790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_08795 PF08220 DeoR-like helix-turn-helix domain EQI29_08795 PF00455 DeoR C terminal sensor domain EQI29_08800 PF00294 pfkB family carbohydrate kinase EQI29_08805 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EQI29_08810 PF13411 MerR HTH family regulatory protein EQI29_08815 PF00296 Luciferase-like monooxygenase EQI29_08820 PF01451 Low molecular weight phosphotyrosine protein phosphatase EQI29_08825 PF07155 ECF-type riboflavin transporter, S component EQI29_08830 PF12558 ATP-binding cassette cobalt transporter EQI29_08830 PF00005 ABC transporter EQI29_08835 PF02361 Cobalt transport protein EQI29_08850 PF00583 Acetyltransferase (GNAT) family EQI29_08855 PF00596 Class II Aldolase and Adducin N-terminal domain EQI29_08860 PF01261 Xylose isomerase-like TIM barrel EQI29_08870 PF03611 PTS system sugar-specific permease component EQI29_08875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_08885 PF00455 DeoR C terminal sensor domain EQI29_08885 PF08220 DeoR-like helix-turn-helix domain EQI29_08895 PF01380 SIS domain EQI29_08895 PF01418 Helix-turn-helix domain, rpiR family EQI29_08900 PF02378 Phosphotransferase system, EIIC EQI29_08900 PF00367 phosphotransferase system, EIIB EQI29_08905 PF00155 Aminotransferase class I and II EQI29_08920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EQI29_08930 PF02378 Phosphotransferase system, EIIC EQI29_09030 PF18719 ArlS sensor domain EQI29_09030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_09030 PF00512 His Kinase A (phospho-acceptor) domain EQI29_09035 PF00486 Transcriptional regulatory protein, C terminal EQI29_09035 PF00072 Response regulator receiver domain EQI29_09040 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EQI29_09040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EQI29_09045 PF01783 Ribosomal L32p protein family EQI29_09055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EQI29_09055 PF03466 LysR substrate binding domain EQI29_09060 PF00224 Pyruvate kinase, barrel domain EQI29_09060 PF02887 Pyruvate kinase, alpha/beta domain EQI29_09060 PF00391 PEP-utilising enzyme, mobile domain EQI29_09065 PF00365 Phosphofructokinase EQI29_09070 PF14579 Helix-hairpin-helix motif EQI29_09070 PF02811 PHP domain EQI29_09070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EQI29_09070 PF07733 Bacterial DNA polymerase III alpha NTPase domain EQI29_09070 PF01336 OB-fold nucleic acid binding domain EQI29_09080 PF07690 Major Facilitator Superfamily EQI29_09085 PF00860 Permease family EQI29_09105 PF03717 Penicillin-binding Protein dimerisation domain EQI29_09105 PF00905 Penicillin binding protein transpeptidase domain EQI29_09110 PF01418 Helix-turn-helix domain, rpiR family EQI29_09110 PF01380 SIS domain EQI29_09115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EQI29_09115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EQI29_09115 PF03129 Anticodon binding domain EQI29_09115 PF02824 TGS domain EQI29_09125 PF01361 Tautomerase enzyme EQI29_09130 PF00403 Heavy-metal-associated domain EQI29_09135 PF13538 UvrD-like helicase C-terminal domain EQI29_09145 PF01709 Transcriptional regulator EQI29_09150 PF05636 HIGH Nucleotidyl Transferase EQI29_09155 PF13649 Methyltransferase domain EQI29_09165 PF01966 HD domain EQI29_09170 PF01467 Cytidylyltransferase-like EQI29_09175 PF01985 CRS1 / YhbY (CRM) domain EQI29_09180 PF01926 50S ribosome-binding GTPase EQI29_09190 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EQI29_09195 PF01039 Carboxyl transferase domain EQI29_09200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EQI29_09200 PF00289 Biotin carboxylase, N-terminal domain EQI29_09200 PF02785 Biotin carboxylase C-terminal domain EQI29_09205 PF07977 FabA-like domain EQI29_09210 PF00364 Biotin-requiring enzyme EQI29_09215 PF02801 Beta-ketoacyl synthase, C-terminal domain EQI29_09215 PF00109 Beta-ketoacyl synthase, N-terminal domain EQI29_09225 PF00698 Acyl transferase domain EQI29_09230 PF00550 Phosphopantetheine attachment site EQI29_09235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EQI29_09235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EQI29_09240 PF01047 MarR family EQI29_09245 PF02151 UvrB/uvrC motif EQI29_09245 PF01541 GIY-YIG catalytic domain EQI29_09245 PF08459 UvrC Helix-hairpin-helix N-terminal EQI29_09250 PF08796 Protein of unknown function (DUF1797) EQI29_09255 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EQI29_09255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EQI29_09260 PF00534 Glycosyl transferases group 1 EQI29_09260 PF13439 Glycosyltransferase Family 4 EQI29_09265 PF00534 Glycosyl transferases group 1 EQI29_09265 PF13439 Glycosyltransferase Family 4 EQI29_09270 PF05524 PEP-utilising enzyme, N-terminal EQI29_09270 PF00391 PEP-utilising enzyme, mobile domain EQI29_09270 PF02896 PEP-utilising enzyme, TIM barrel domain EQI29_09275 PF00381 PTS HPr component phosphorylation site EQI29_09280 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_09280 PF07724 AAA domain (Cdc48 subfamily) EQI29_09280 PF17871 AAA lid domain EQI29_09280 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_09300 PF03144 Elongation factor Tu domain 2 EQI29_09300 PF00009 Elongation factor Tu GTP binding domain EQI29_09300 PF16658 Class II release factor RF3, C-terminal domain EQI29_09310 PF03471 Transporter associated domain EQI29_09310 PF00571 CBS domain EQI29_09310 PF01595 Cyclin M transmembrane N-terminal domain EQI29_09315 PF01594 AI-2E family transporter EQI29_09320 PF00583 Acetyltransferase (GNAT) family EQI29_09325 PF04167 Protein of unknown function (DUF402) EQI29_09330 PF14815 NUDIX domain EQI29_09330 PF00730 HhH-GPD superfamily base excision DNA repair protein EQI29_09335 PF02631 RecX family EQI29_09340 PF01938 TRAM domain EQI29_09340 PF05958 tRNA (Uracil-5-)-methyltransferase EQI29_09345 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EQI29_09350 PF03073 TspO/MBR family EQI29_09355 PF03816 Cell envelope-related transcriptional attenuator domain EQI29_09360 PF00313 'Cold-shock' DNA-binding domain EQI29_09365 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EQI29_09365 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EQI29_09370 PF04138 GtrA-like protein EQI29_09375 PF01545 Cation efflux family EQI29_09385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQI29_09395 PF02254 TrkA-N domain EQI29_09395 PF02080 TrkA-C domain EQI29_09400 PF00072 Response regulator receiver domain EQI29_09400 PF00196 Bacterial regulatory proteins, luxR family EQI29_09405 PF00672 HAMP domain EQI29_09405 PF07730 Histidine kinase EQI29_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_09415 PF01272 Transcription elongation factor, GreA/GreB, C-term EQI29_09415 PF03449 Transcription elongation factor, N-terminal EQI29_09420 PF02618 YceG-like family EQI29_09430 PF01370 NAD dependent epimerase/dehydratase family EQI29_09445 PF04991 LicD family EQI29_09455 PF00535 Glycosyl transferase family 2 EQI29_09465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EQI29_09470 PF04991 LicD family EQI29_09475 PF00535 Glycosyl transferase family 2 EQI29_09480 PF02397 Bacterial sugar transferase EQI29_09485 PF00535 Glycosyl transferase family 2 EQI29_09490 PF00398 Ribosomal RNA adenine dimethylase EQI29_09495 PF08239 Bacterial SH3 domain EQI29_09495 PF00005 ABC transporter EQI29_09500 PF01061 ABC-2 type transporter EQI29_09515 PF04321 RmlD substrate binding domain EQI29_09520 PF16363 GDP-mannose 4,6 dehydratase EQI29_09525 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EQI29_09530 PF00483 Nucleotidyl transferase EQI29_09535 PF00535 Glycosyl transferase family 2 EQI29_09550 PF00953 Glycosyl transferase family 4 EQI29_09555 PF03631 Virulence factor BrkB EQI29_09560 PF00557 Metallopeptidase family M24 EQI29_09565 PF00258 Flavodoxin EQI29_09575 PF02073 Thermophilic metalloprotease (M29) EQI29_09615 PF02378 Phosphotransferase system, EIIC EQI29_09620 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQI29_09625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_09630 PF00158 Sigma-54 interaction domain EQI29_09630 PF03610 PTS system fructose IIA component EQI29_09630 PF00874 PRD domain EQI29_09635 PF00271 Helicase conserved C-terminal domain EQI29_09635 PF00270 DEAD/DEAH box helicase EQI29_09640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EQI29_09645 PF17746 SfsA N-terminal OB domain EQI29_09645 PF03749 Sugar fermentation stimulation protein RE domain EQI29_09660 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EQI29_09660 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EQI29_09665 PF08264 Anticodon-binding domain of tRNA EQI29_09665 PF00133 tRNA synthetases class I (I, L, M and V) EQI29_09665 PF06827 Zinc finger found in FPG and IleRS EQI29_09670 PF05103 DivIVA protein EQI29_09675 PF01479 S4 domain EQI29_09675 PF17774 Putative RNA-binding domain in YlmH EQI29_09685 PF04472 Cell division protein SepF EQI29_09690 PF01168 Alanine racemase, N-terminal domain EQI29_09695 PF00091 Tubulin/FtsZ family, GTPase domain EQI29_09695 PF12327 FtsZ family, C-terminal domain EQI29_09700 PF02491 SHS2 domain inserted in FTSA EQI29_09700 PF11983 Membrane-attachment and polymerisation-promoting switch EQI29_09705 PF03799 Cell division protein FtsQ EQI29_09705 PF08478 POTRA domain, FtsQ-type EQI29_09710 PF04101 Glycosyltransferase family 28 C-terminal domain EQI29_09710 PF03033 Glycosyltransferase family 28 N-terminal domain EQI29_09715 PF02875 Mur ligase family, glutamate ligase domain EQI29_09715 PF08245 Mur ligase middle domain EQI29_09720 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EQI29_09720 PF00953 Glycosyl transferase family 4 EQI29_09725 PF03717 Penicillin-binding Protein dimerisation domain EQI29_09725 PF00905 Penicillin binding protein transpeptidase domain EQI29_09725 PF03793 PASTA domain EQI29_09735 PF01795 MraW methylase family EQI29_09740 PF02381 MraZ protein, putative antitoxin-like EQI29_09760 PF13476 AAA domain EQI29_09765 PF01316 Arginine repressor, DNA binding domain EQI29_09765 PF02863 Arginine repressor, C-terminal domain EQI29_09770 PF01728 FtsJ-like methyltransferase EQI29_09770 PF01479 S4 domain EQI29_09775 PF00348 Polyprenyl synthetase EQI29_09780 PF02609 Exonuclease VII small subunit EQI29_09785 PF13742 OB-fold nucleic acid binding domain EQI29_09785 PF02601 Exonuclease VII, large subunit EQI29_09790 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EQI29_09790 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EQI29_09795 PF01029 NusB family EQI29_09800 PF03780 Asp23 family, cell envelope-related function EQI29_09805 PF00557 Metallopeptidase family M24 EQI29_09805 PF01321 Creatinase/Prolidase N-terminal domain EQI29_09810 PF04226 Transglycosylase associated protein EQI29_09820 PF03613 PTS system mannose/fructose/sorbose family IID component EQI29_09825 PF03609 PTS system sorbose-specific iic component EQI29_09830 PF03830 PTS system sorbose subfamily IIB component EQI29_09830 PF03610 PTS system fructose IIA component EQI29_09835 PF03830 PTS system sorbose subfamily IIB component EQI29_09835 PF03610 PTS system fructose IIA component EQI29_09840 PF00158 Sigma-54 interaction domain EQI29_09840 PF00874 PRD domain EQI29_09840 PF03610 PTS system fructose IIA component EQI29_09845 PF01016 Ribosomal L27 protein EQI29_09855 PF00829 Ribosomal prokaryotic L21 protein EQI29_09865 PF00916 Sulfate permease family EQI29_09865 PF01740 STAS domain EQI29_09870 PF06993 Protein of unknown function (DUF1304) EQI29_09895 PF03099 Biotin/lipoate A/B protein ligase family EQI29_09895 PF10437 Bacterial lipoate protein ligase C-terminus EQI29_09900 PF12706 Beta-lactamase superfamily domain EQI29_09910 PF05343 M42 glutamyl aminopeptidase EQI29_09915 PF04914 DltD protein EQI29_09920 PF00550 Phosphopantetheine attachment site EQI29_09925 PF03062 MBOAT, membrane-bound O-acyltransferase family EQI29_09930 PF13193 AMP-binding enzyme C-terminal domain EQI29_09930 PF00501 AMP-binding enzyme EQI29_09945 PF00005 ABC transporter EQI29_09950 PF13597 Anaerobic ribonucleoside-triphosphate reductase EQI29_09950 PF03477 ATP cone domain EQI29_09965 PF11798 IMS family HHH motif EQI29_09965 PF00817 impB/mucB/samB family EQI29_09965 PF11799 impB/mucB/samB family C-terminal domain EQI29_09970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQI29_09975 PF06156 Initiation control protein YabA EQI29_09980 PF04468 PSP1 C-terminal conserved region EQI29_09985 PF09115 DNA polymerase III, delta subunit, C terminal EQI29_09990 PF06153 Cyclic-di-AMP receptor EQI29_09995 PF02223 Thymidylate kinase EQI29_10000 PF02132 RecR protein EQI29_10000 PF13662 Toprim domain EQI29_10005 PF02575 YbaB/EbfC DNA-binding family EQI29_10010 PF12169 DNA polymerase III subunits gamma and tau domain III EQI29_10030 PF13545 Crp-like helix-turn-helix domain EQI29_10040 PF07690 Major Facilitator Superfamily EQI29_10050 PF08220 DeoR-like helix-turn-helix domain EQI29_10050 PF00455 DeoR C terminal sensor domain EQI29_10065 PF01116 Fructose-bisphosphate aldolase class-II EQI29_10070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_10150 PF01197 Ribosomal protein L31 EQI29_10155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQI29_10155 PF07497 Rho termination factor, RNA-binding domain EQI29_10155 PF07498 Rho termination factor, N-terminal domain EQI29_10160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EQI29_10165 PF01116 Fructose-bisphosphate aldolase class-II EQI29_10175 PF00117 Glutamine amidotransferase class-I EQI29_10175 PF06418 CTP synthase N-terminus EQI29_10180 PF00120 Glutamine synthetase, catalytic domain EQI29_10180 PF03951 Glutamine synthetase, beta-Grasp domain EQI29_10185 PF13411 MerR HTH family regulatory protein EQI29_10190 PF01926 50S ribosome-binding GTPase EQI29_10190 PF16360 GTP-binding GTPase Middle Region EQI29_10190 PF13167 GTP-binding GTPase N-terminal EQI29_10200 PF03009 Glycerophosphoryl diester phosphodiesterase family EQI29_10210 PF00574 Clp protease EQI29_10215 PF00132 Bacterial transferase hexapeptide (six repeats) EQI29_10225 PF00664 ABC transporter transmembrane region EQI29_10225 PF00005 ABC transporter EQI29_10230 PF00005 ABC transporter EQI29_10230 PF00664 ABC transporter transmembrane region EQI29_10240 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EQI29_10240 PF00753 Metallo-beta-lactamase superfamily EQI29_10240 PF17770 Ribonuclease J C-terminal domain EQI29_10250 PF00313 'Cold-shock' DNA-binding domain EQI29_10255 PF04002 RadC-like JAB domain EQI29_10260 PF13419 Haloacid dehalogenase-like hydrolase EQI29_10265 PF08245 Mur ligase middle domain EQI29_10265 PF02875 Mur ligase family, glutamate ligase domain EQI29_10270 PF00133 tRNA synthetases class I (I, L, M and V) EQI29_10270 PF10458 Valyl tRNA synthetase tRNA binding arm EQI29_10270 PF08264 Anticodon-binding domain of tRNA EQI29_10275 PF06971 Putative DNA-binding protein N-terminus EQI29_10275 PF02629 CoA binding domain EQI29_10280 PF02568 Thiamine biosynthesis protein (ThiI) EQI29_10280 PF02926 THUMP domain EQI29_10285 PF00266 Aminotransferase class-V EQI29_10290 PF06160 Septation ring formation regulator, EzrA EQI29_10305 PF01904 Protein of unknown function DUF72 EQI29_10310 PF17763 Glutaminase/Asparaginase C-terminal domain EQI29_10310 PF00710 Asparaginase, N-terminal EQI29_10325 PF03051 Peptidase C1-like family EQI29_10400 PF00575 S1 RNA binding domain EQI29_10405 PF00155 Aminotransferase class I and II EQI29_10410 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EQI29_10415 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_10420 PF04608 Phosphatidylglycerophosphatase A EQI29_10430 PF13344 Haloacid dehalogenase-like hydrolase EQI29_10435 PF06265 Protein of unknown function (DUF1027) EQI29_10440 PF02872 5'-nucleotidase, C-terminal domain EQI29_10450 PF14437 MafB19-like deaminase EQI29_10455 PF13556 PucR C-terminal helix-turn-helix domain EQI29_10465 PF17126 RsmF rRNA methyltransferase first C-terminal domain EQI29_10465 PF01189 16S rRNA methyltransferase RsmB/F EQI29_10465 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF EQI29_10480 PF04298 Putative neutral zinc metallopeptidase EQI29_10485 PF08274 PhnA Zinc-Ribbon EQI29_10485 PF03831 PhnA domain EQI29_10490 PF02272 DHHA1 domain EQI29_10490 PF01368 DHH family EQI29_10495 PF07085 DRTGG domain EQI29_10495 PF00392 Bacterial regulatory proteins, gntR family EQI29_10495 PF03061 Thioesterase superfamily EQI29_10495 PF00571 CBS domain EQI29_10500 PF12706 Beta-lactamase superfamily domain EQI29_10510 PF00753 Metallo-beta-lactamase superfamily EQI29_10510 PF17770 Ribonuclease J C-terminal domain EQI29_10510 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EQI29_10520 PF02687 FtsX-like permease family EQI29_10520 PF12704 MacB-like periplasmic core domain EQI29_10525 PF00005 ABC transporter EQI29_10540 PF01979 Amidohydrolase family EQI29_10545 PF03606 C4-dicarboxylate anaerobic carrier EQI29_10555 PF13580 SIS domain EQI29_10565 PF00483 Nucleotidyl transferase EQI29_10570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EQI29_10570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EQI29_10575 PF00704 Glycosyl hydrolases family 18 EQI29_10585 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EQI29_10595 PF01380 SIS domain EQI29_10600 PF03613 PTS system mannose/fructose/sorbose family IID component EQI29_10610 PF03830 PTS system sorbose subfamily IIB component EQI29_10620 PF00874 PRD domain EQI29_10620 PF03610 PTS system fructose IIA component EQI29_10620 PF00158 Sigma-54 interaction domain EQI29_10645 PF00664 ABC transporter transmembrane region EQI29_10645 PF00005 ABC transporter EQI29_10650 PF00664 ABC transporter transmembrane region EQI29_10650 PF00005 ABC transporter EQI29_10660 PF02142 MGS-like domain EQI29_10665 PF03459 TOBE domain EQI29_10665 PF17912 MalK OB fold domain EQI29_10665 PF00005 ABC transporter EQI29_10690 PF00398 Ribosomal RNA adenine dimethylase EQI29_10695 PF01751 Toprim domain EQI29_10695 PF13331 Domain of unknown function (DUF4093) EQI29_10700 PF01026 TatD related DNase EQI29_10705 PF13520 Amino acid permease EQI29_10720 PF09334 tRNA synthetases class I (M) EQI29_10720 PF01588 Putative tRNA binding domain EQI29_10720 PF08264 Anticodon-binding domain of tRNA EQI29_10740 PF07282 Putative transposase DNA-binding domain EQI29_10740 PF01385 Probable transposase EQI29_10740 PF12323 Helix-turn-helix domain EQI29_10745 PF00005 ABC transporter EQI29_10745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQI29_10750 PF00005 ABC transporter EQI29_10750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQI29_10755 PF12911 N-terminal TM domain of oligopeptide transport permease C EQI29_10755 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_10760 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_10770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQI29_10780 PF00583 Acetyltransferase (GNAT) family EQI29_10795 PF04055 Radical SAM superfamily EQI29_10800 PF17854 FtsK alpha domain EQI29_10800 PF09397 Ftsk gamma domain EQI29_10800 PF01580 FtsK/SpoIIIE family EQI29_10805 PF00232 Glycosyl hydrolase family 1 EQI29_10810 PF00497 Bacterial extracellular solute-binding proteins, family 3 EQI29_10815 PF00005 ABC transporter EQI29_10820 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_10835 PF17802 Prealbumin-like fold domain EQI29_10835 PF05737 Collagen binding domain EQI29_10835 PF05738 Cna protein B-type domain EQI29_10860 PF07859 alpha/beta hydrolase fold EQI29_10865 PF00464 Serine hydroxymethyltransferase EQI29_10870 PF01300 Telomere recombination EQI29_10870 PF03481 Putative GTP-binding controlling metal-binding EQI29_10875 PF05175 Methyltransferase small domain EQI29_10875 PF17827 PrmC N-terminal domain EQI29_10880 PF03462 PCRF domain EQI29_10880 PF00472 RF-1 domain EQI29_10885 PF00265 Thymidine kinase EQI29_10895 PF10502 Signal peptidase, peptidase S26 EQI29_10910 PF02677 Epoxyqueuosine reductase QueH EQI29_10915 PF02386 Cation transport protein EQI29_10920 PF08245 Mur ligase middle domain EQI29_10920 PF08353 Domain of unknown function (DUF1727) EQI29_10925 PF07685 CobB/CobQ-like glutamine amidotransferase domain EQI29_10930 PF08125 Mannitol dehydrogenase C-terminal domain EQI29_10930 PF01232 Mannitol dehydrogenase Rossmann domain EQI29_10935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_10940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_10940 PF02378 Phosphotransferase system, EIIC EQI29_10945 PF00005 ABC transporter EQI29_10955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_10960 PF08279 HTH domain EQI29_10960 PF05043 Mga helix-turn-helix domain EQI29_10960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_10960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_10960 PF00874 PRD domain EQI29_10965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_10965 PF02378 Phosphotransferase system, EIIC EQI29_10970 PF01238 Phosphomannose isomerase type I EQI29_10975 PF00144 Beta-lactamase EQI29_10985 PF00664 ABC transporter transmembrane region EQI29_10985 PF00005 ABC transporter EQI29_10990 PF00005 ABC transporter EQI29_10990 PF00664 ABC transporter transmembrane region EQI29_11005 PF02525 Flavodoxin-like fold EQI29_11010 PF01594 AI-2E family transporter EQI29_11020 PF10282 Lactonase, 7-bladed beta-propeller EQI29_11030 PF00884 Sulfatase EQI29_11040 PF01842 ACT domain EQI29_11040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQI29_11040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQI29_11045 PF11762 L-arabinose isomerase C-terminal domain EQI29_11045 PF02610 L-arabinose isomerase EQI29_11050 PF00596 Class II Aldolase and Adducin N-terminal domain EQI29_11060 PF00083 Sugar (and other) transporter EQI29_11070 PF00392 Bacterial regulatory proteins, gntR family EQI29_11075 PF01306 LacY proton/sugar symporter EQI29_11080 PF04616 Glycosyl hydrolases family 43 EQI29_11080 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain EQI29_11090 PF02540 NAD synthase EQI29_11095 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EQI29_11095 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain EQI29_11095 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EQI29_11145 PF13411 MerR HTH family regulatory protein EQI29_11145 PF07739 TipAS antibiotic-recognition domain EQI29_11150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EQI29_11150 PF00356 Bacterial regulatory proteins, lacI family EQI29_11160 PF02378 Phosphotransferase system, EIIC EQI29_11165 PF00118 TCP-1/cpn60 chaperonin family EQI29_11170 PF00166 Chaperonin 10 Kd subunit EQI29_11180 PF02378 Phosphotransferase system, EIIC EQI29_11185 PF13460 NAD(P)H-binding EQI29_11190 PF00753 Metallo-beta-lactamase superfamily EQI29_11205 PF13426 PAS domain EQI29_11205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_11205 PF00512 His Kinase A (phospho-acceptor) domain EQI29_11205 PF00672 HAMP domain EQI29_11210 PF00486 Transcriptional regulatory protein, C terminal EQI29_11210 PF00072 Response regulator receiver domain EQI29_11215 PF02645 Uncharacterised protein, DegV family COG1307 EQI29_11230 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_11235 PF00005 ABC transporter EQI29_11235 PF00571 CBS domain EQI29_11240 PF00392 Bacterial regulatory proteins, gntR family EQI29_11240 PF07729 FCD domain EQI29_11255 PF07664 Ferrous iron transport protein B C terminus EQI29_11255 PF17910 FeoB cytosolic helical domain EQI29_11255 PF07670 Nucleoside recognition EQI29_11255 PF02421 Ferrous iron transport protein B EQI29_11265 PF00462 Glutaredoxin EQI29_11270 PF02867 Ribonucleotide reductase, barrel domain EQI29_11270 PF08343 Ribonucleotide reductase N-terminal EQI29_11270 PF00317 Ribonucleotide reductase, all-alpha domain EQI29_11275 PF00268 Ribonucleotide reductase, small chain EQI29_11280 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain EQI29_11280 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain EQI29_11280 PF02278 Polysaccharide lyase family 8, super-sandwich domain EQI29_11285 PF02278 Polysaccharide lyase family 8, super-sandwich domain EQI29_11285 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain EQI29_11285 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain EQI29_11295 PF03609 PTS system sorbose-specific iic component EQI29_11300 PF03610 PTS system fructose IIA component EQI29_11300 PF03830 PTS system sorbose subfamily IIB component EQI29_11305 PF00834 Ribulose-phosphate 3 epimerase family EQI29_11310 PF02378 Phosphotransferase system, EIIC EQI29_11310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_11315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_11320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_11320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_11325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_11345 PF07470 Glycosyl Hydrolase Family 88 EQI29_11350 PF01301 Glycosyl hydrolases family 35 EQI29_11365 PF01594 AI-2E family transporter EQI29_11370 PF02308 MgtC family EQI29_11375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EQI29_11380 PF00005 ABC transporter EQI29_11380 PF12848 ABC transporter EQI29_11385 PF07690 Major Facilitator Superfamily EQI29_11395 PF00542 Ribosomal protein L7/L12 C-terminal domain EQI29_11395 PF16320 Ribosomal protein L7/L12 dimerisation domain EQI29_11400 PF00466 Ribosomal protein L10 EQI29_11405 PF00687 Ribosomal protein L1p/L10e family EQI29_11410 PF03946 Ribosomal protein L11, N-terminal domain EQI29_11410 PF00298 Ribosomal protein L11, RNA binding domain EQI29_11415 PF01842 ACT domain EQI29_11415 PF03315 Serine dehydratase beta chain EQI29_11420 PF03313 Serine dehydratase alpha chain EQI29_11435 PF02357 Transcription termination factor nusG EQI29_11435 PF00467 KOW motif EQI29_11445 PF00471 Ribosomal protein L33 EQI29_11460 PF00781 Diacylglycerol kinase catalytic domain EQI29_11465 PF14490 Helix-hairpin-helix containing domain EQI29_11465 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EQI29_11465 PF13538 UvrD-like helicase C-terminal domain EQI29_11475 PF00588 SpoU rRNA Methylase family EQI29_11485 PF03932 CutC family EQI29_11490 PF03448 MgtE intracellular N domain EQI29_11490 PF01769 Divalent cation transporter EQI29_11490 PF00571 CBS domain EQI29_11495 PF00849 RNA pseudouridylate synthase EQI29_11500 PF01513 ATP-NAD kinase EQI29_11505 PF04607 Region found in RelA / SpoT proteins EQI29_11510 PF01928 CYTH domain EQI29_11520 PF01432 Peptidase family M3 EQI29_11520 PF08439 Oligopeptidase F EQI29_11530 PF05389 Negative regulator of genetic competence (MecA) EQI29_11535 PF03960 ArsC family EQI29_11545 PF00271 Helicase conserved C-terminal domain EQI29_11545 PF04434 SWIM zinc finger EQI29_11545 PF00176 SNF2 family N-terminal domain EQI29_11550 PF13476 AAA domain EQI29_11555 PF12320 Type 5 capsule protein repressor C-terminal domain EQI29_11555 PF00149 Calcineurin-like phosphoesterase EQI29_11565 PF01553 Acyltransferase EQI29_11570 PF05175 Methyltransferase small domain EQI29_11575 PF01541 GIY-YIG catalytic domain EQI29_11580 PF01757 Acyltransferase family EQI29_11585 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQI29_11585 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQI29_11590 PF02938 GAD domain EQI29_11590 PF00152 tRNA synthetases class II (D, K and N) EQI29_11590 PF01336 OB-fold nucleic acid binding domain EQI29_11595 PF13393 Histidyl-tRNA synthetase EQI29_11595 PF03129 Anticodon binding domain EQI29_11605 PF00248 Aldo/keto reductase family EQI29_11610 PF00067 Cytochrome P450 EQI29_11615 PF02580 D-Tyr-tRNA(Tyr) deacylase EQI29_11620 PF04607 Region found in RelA / SpoT proteins EQI29_11620 PF13291 ACT domain EQI29_11620 PF02824 TGS domain EQI29_11630 PF04452 RNA methyltransferase EQI29_11645 PF02245 Methylpurine-DNA glycosylase (MPG) EQI29_11650 PF16193 AAA C-terminal domain EQI29_11650 PF12002 MgsA AAA+ ATPase C terminal EQI29_11650 PF05496 Holliday junction DNA helicase RuvB P-loop domain EQI29_11665 PF00582 Universal stress protein family EQI29_11670 PF00871 Acetokinase family EQI29_11675 PF02384 N-6 DNA Methylase EQI29_11700 PF07963 Prokaryotic N-terminal methylation motif EQI29_11705 PF00482 Type II secretion system (T2SS), protein F EQI29_11710 PF00437 Type II/IV secretion system protein EQI29_11715 PF01979 Amidohydrolase family EQI29_11715 PF13382 Adenine deaminase C-terminal domain EQI29_11720 PF02390 Putative methyltransferase EQI29_11730 PF05975 Bacterial ABC transporter protein EcsB EQI29_11735 PF00005 ABC transporter EQI29_11740 PF01230 HIT domain EQI29_11750 PF13145 PPIC-type PPIASE domain EQI29_11755 PF01336 OB-fold nucleic acid binding domain EQI29_11755 PF01966 HD domain EQI29_11760 PF13514 AAA domain EQI29_11765 PF00149 Calcineurin-like phosphoesterase EQI29_11820 PF01738 Dienelactone hydrolase family EQI29_11825 PF00295 Glycosyl hydrolases family 28 EQI29_11845 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_11850 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_11860 PF00356 Bacterial regulatory proteins, lacI family EQI29_11870 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EQI29_11870 PF08666 SAF domain EQI29_11875 PF02614 Glucuronate isomerase EQI29_11880 PF00657 GDSL-like Lipase/Acylhydrolase EQI29_11890 PF00664 ABC transporter transmembrane region EQI29_11890 PF00005 ABC transporter EQI29_11895 PF06133 Control of competence regulator ComK, YlbF/YmcA EQI29_11900 PF00912 Transglycosylase EQI29_11900 PF00905 Penicillin binding protein transpeptidase domain EQI29_11905 PF00849 RNA pseudouridylate synthase EQI29_11905 PF01479 S4 domain EQI29_11910 PF00480 ROK family EQI29_11915 PF01074 Glycosyl hydrolases family 38 N-terminal domain EQI29_11915 PF09261 Alpha mannosidase middle domain EQI29_11915 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain EQI29_11915 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 EQI29_11915 PF07748 Glycosyl hydrolases family 38 C-terminal domain EQI29_11925 PF00392 Bacterial regulatory proteins, gntR family EQI29_11935 PF00072 Response regulator receiver domain EQI29_11935 PF12833 Helix-turn-helix domain EQI29_11940 PF00672 HAMP domain EQI29_11940 PF02743 Cache domain EQI29_11940 PF06580 Histidine kinase EQI29_11940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_11955 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_11965 PF01479 S4 domain EQI29_11965 PF00849 RNA pseudouridylate synthase EQI29_11970 PF01943 Polysaccharide biosynthesis protein EQI29_11970 PF14667 Polysaccharide biosynthesis C-terminal domain EQI29_11980 PF08245 Mur ligase middle domain EQI29_11980 PF02875 Mur ligase family, glutamate ligase domain EQI29_11990 PF02378 Phosphotransferase system, EIIC EQI29_12000 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQI29_12005 PF08279 HTH domain EQI29_12005 PF05043 Mga helix-turn-helix domain EQI29_12005 PF00874 PRD domain EQI29_12005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_12010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_12020 PF00133 tRNA synthetases class I (I, L, M and V) EQI29_12020 PF09334 tRNA synthetases class I (M) EQI29_12020 PF13603 Leucyl-tRNA synthetase, Domain 2 EQI29_12020 PF08264 Anticodon-binding domain of tRNA EQI29_12030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EQI29_12030 PF01476 LysM domain EQI29_12035 PF01569 PAP2 superfamily EQI29_12040 PF16199 Radical_SAM C-terminal domain EQI29_12040 PF04055 Radical SAM superfamily EQI29_12045 PF06962 Putative rRNA methylase EQI29_12050 PF00664 ABC transporter transmembrane region EQI29_12050 PF00005 ABC transporter EQI29_12055 PF00005 ABC transporter EQI29_12055 PF00664 ABC transporter transmembrane region EQI29_12060 PF00440 Bacterial regulatory proteins, tetR family EQI29_12060 PF02909 Tetracyclin repressor-like, C-terminal domain EQI29_12070 PF07690 Major Facilitator Superfamily EQI29_12080 PF02773 S-adenosylmethionine synthetase, C-terminal domain EQI29_12080 PF00438 S-adenosylmethionine synthetase, N-terminal domain EQI29_12080 PF02772 S-adenosylmethionine synthetase, central domain EQI29_12230 PF00152 tRNA synthetases class II (D, K and N) EQI29_12230 PF01336 OB-fold nucleic acid binding domain EQI29_12235 PF01207 Dihydrouridine synthase (Dus) EQI29_12240 PF01430 Hsp33 protein EQI29_12245 PF01434 Peptidase family M41 EQI29_12245 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_12245 PF17862 AAA+ lid domain EQI29_12245 PF06480 FtsH Extracellular EQI29_12255 PF11734 TilS substrate C-terminal domain EQI29_12255 PF01171 PP-loop family EQI29_12260 PF00575 S1 RNA binding domain EQI29_12270 PF01479 S4 domain EQI29_12275 PF14667 Polysaccharide biosynthesis C-terminal domain EQI29_12275 PF01943 Polysaccharide biosynthesis protein EQI29_12280 PF17757 UvrB interaction domain EQI29_12280 PF03461 TRCF domain EQI29_12280 PF02559 CarD-like/TRCF domain EQI29_12280 PF00270 DEAD/DEAH box helicase EQI29_12280 PF00271 Helicase conserved C-terminal domain EQI29_12285 PF01195 Peptidyl-tRNA hydrolase EQI29_12290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EQI29_12290 PF00056 lactate/malate dehydrogenase, NAD binding domain EQI29_12300 PF01709 Transcriptional regulator EQI29_12315 PF00877 NlpC/P60 family EQI29_12325 PF04085 rod shape-determining protein MreC EQI29_12335 PF00834 Ribulose-phosphate 3 epimerase family EQI29_12340 PF03193 RsgA GTPase EQI29_12340 PF16745 RsgA N-terminal domain EQI29_12345 PF03793 PASTA domain EQI29_12345 PF00069 Protein kinase domain EQI29_12355 PF01029 NusB family EQI29_12355 PF01189 16S rRNA methyltransferase RsmB/F EQI29_12360 PF00551 Formyl transferase EQI29_12360 PF02911 Formyl transferase, C-terminal domain EQI29_12365 PF01327 Polypeptide deformylase EQI29_12370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EQI29_12370 PF17764 3′ DNA-binding domain (3′BD) EQI29_12370 PF04851 Type III restriction enzyme, res subunit EQI29_12370 PF00271 Helicase conserved C-terminal domain EQI29_12370 PF18074 Primosomal protein N C-terminal domain EQI29_12375 PF01192 RNA polymerase Rpb6 EQI29_12380 PF00625 Guanylate kinase EQI29_12390 PF03755 YicC-like family, N-terminal region EQI29_12390 PF08340 Domain of unknown function (DUF1732) EQI29_12400 PF01734 Patatin-like phospholipase EQI29_12410 PF09515 Thiamine transporter protein (Thia_YuaJ) EQI29_12415 PF14572 Phosphoribosyl synthetase-associated domain EQI29_12415 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EQI29_12420 PF00132 Bacterial transferase hexapeptide (six repeats) EQI29_12420 PF00483 Nucleotidyl transferase EQI29_12430 PF00156 Phosphoribosyl transferase domain EQI29_12430 PF09182 Bacterial purine repressor, N-terminal EQI29_12435 PF00950 ABC 3 transport family EQI29_12440 PF00005 ABC transporter EQI29_12445 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EQI29_12445 PF01297 Zinc-uptake complex component A periplasmic EQI29_12450 PF00288 GHMP kinases N terminal domain EQI29_12450 PF08544 GHMP kinases C terminal EQI29_12455 PF09924 Uncharacterised conserved protein (DUF2156) EQI29_12455 PF03706 Lysylphosphatidylglycerol synthase TM region EQI29_12460 PF14748 Pyrroline-5-carboxylate reductase dimerisation EQI29_12460 PF03807 NADP oxidoreductase coenzyme F420-dependent EQI29_12465 PF12072 Domain of unknown function (DUF3552) EQI29_12465 PF00013 KH domain EQI29_12465 PF01966 HD domain EQI29_12470 PF00154 recA bacterial DNA recombination protein EQI29_12475 PF00994 Probable molybdopterin binding domain EQI29_12475 PF02464 Competence-damaged protein EQI29_12475 PF18146 Damage-inducible protein CinA KH domain EQI29_12480 PF01066 CDP-alcohol phosphatidyltransferase EQI29_12490 PF13464 Domain of unknown function (DUF4115) EQI29_12495 PF05193 Peptidase M16 inactive domain EQI29_12495 PF00675 Insulinase (Peptidase family M16) EQI29_12500 PF05193 Peptidase M16 inactive domain EQI29_12505 PF01741 Large-conductance mechanosensitive channel, MscL EQI29_12510 PF13673 Acetyltransferase (GNAT) domain EQI29_12515 PF06257 Biofilm formation stimulator VEG EQI29_12525 PF05991 YacP-like NYN domain EQI29_12530 PF08032 RNA 2'-O ribose methyltransferase substrate binding EQI29_12530 PF00588 SpoU rRNA Methylase family EQI29_12535 PF00636 Ribonuclease III domain EQI29_12540 PF01406 tRNA synthetases class I (C) catalytic domain EQI29_12540 PF09190 DALR domain EQI29_12545 PF00132 Bacterial transferase hexapeptide (six repeats) EQI29_12545 PF06426 Serine acetyltransferase, N-terminal EQI29_12550 PF00749 tRNA synthetases class I (E and Q), catalytic domain EQI29_12560 PF18073 Rubredoxin metal binding domain EQI29_12565 PF00692 dUTPase EQI29_12570 PF00696 Amino acid kinase family EQI29_12575 PF00171 Aldehyde dehydrogenase family EQI29_12595 PF07690 Major Facilitator Superfamily EQI29_12610 PF00005 ABC transporter EQI29_12620 PF00881 Nitroreductase family EQI29_12635 PF01476 LysM domain EQI29_12635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EQI29_12640 PF01476 LysM domain EQI29_12640 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EQI29_12645 PF03123 CAT RNA binding domain EQI29_12645 PF00874 PRD domain EQI29_12650 PF02378 Phosphotransferase system, EIIC EQI29_12650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_12650 PF00367 phosphotransferase system, EIIB EQI29_12660 PF05368 NmrA-like family EQI29_12685 PF10140 WXG100 protein secretion system (Wss), protein YukC EQI29_12705 PF06013 Proteins of 100 residues with WXG EQI29_12715 PF03591 AzlC protein EQI29_12725 PF08240 Alcohol dehydrogenase GroES-like domain EQI29_12725 PF00107 Zinc-binding dehydrogenase EQI29_12730 PF01207 Dihydrouridine synthase (Dus) EQI29_12740 PF01061 ABC-2 type transporter EQI29_12745 PF00005 ABC transporter EQI29_12755 PF05190 MutS family domain IV EQI29_12755 PF05192 MutS domain III EQI29_12755 PF05188 MutS domain II EQI29_12755 PF01624 MutS domain I EQI29_12755 PF00488 MutS domain V EQI29_12760 PF01074 Glycosyl hydrolases family 38 N-terminal domain EQI29_12760 PF07748 Glycosyl hydrolases family 38 C-terminal domain EQI29_12760 PF09261 Alpha mannosidase middle domain EQI29_12770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_12775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQI29_12775 PF02378 Phosphotransferase system, EIIC EQI29_12775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_12780 PF00874 PRD domain EQI29_12780 PF08279 HTH domain EQI29_12780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQI29_12780 PF05043 Mga helix-turn-helix domain EQI29_12825 PF00380 Ribosomal protein S9/S16 EQI29_12830 PF00572 Ribosomal protein L13 EQI29_12835 PF00210 Ferritin-like domain EQI29_12840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EQI29_12840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EQI29_12845 PF06750 Bacterial Peptidase A24 N-terminal domain EQI29_12845 PF01478 Type IV leader peptidase family EQI29_12850 PF01625 Peptide methionine sulfoxide reductase EQI29_12860 PF00623 RNA polymerase Rpb1, domain 2 EQI29_12860 PF04998 RNA polymerase Rpb1, domain 5 EQI29_12860 PF04997 RNA polymerase Rpb1, domain 1 EQI29_12860 PF05000 RNA polymerase Rpb1, domain 4 EQI29_12860 PF04983 RNA polymerase Rpb1, domain 3 EQI29_12865 PF10385 RNA polymerase beta subunit external 1 domain EQI29_12865 PF04561 RNA polymerase Rpb2, domain 2 EQI29_12865 PF04560 RNA polymerase Rpb2, domain 7 EQI29_12865 PF00562 RNA polymerase Rpb2, domain 6 EQI29_12865 PF04565 RNA polymerase Rpb2, domain 3 EQI29_12865 PF04563 RNA polymerase beta subunit EQI29_12880 PF02653 Branched-chain amino acid transport system / permease component EQI29_12885 PF00005 ABC transporter EQI29_12895 PF08279 HTH domain EQI29_12895 PF02237 Biotin protein ligase C terminal domain EQI29_12895 PF03099 Biotin/lipoate A/B protein ligase family EQI29_12930 PF00348 Polyprenyl synthetase EQI29_12950 PF04205 FMN-binding domain EQI29_12955 PF02424 ApbE family EQI29_12980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_12980 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_12995 PF02861 Clp amino terminal domain, pathogenicity island component EQI29_12995 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_12995 PF17871 AAA lid domain EQI29_12995 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_12995 PF07724 AAA domain (Cdc48 subfamily) EQI29_13000 PF17727 CtsR C-terminal dimerization domain EQI29_13000 PF05848 CtsR N-terminal HTH domain EQI29_13070 PF00486 Transcriptional regulatory protein, C terminal EQI29_13070 PF00072 Response regulator receiver domain EQI29_13075 PF00672 HAMP domain EQI29_13075 PF00512 His Kinase A (phospho-acceptor) domain EQI29_13075 PF13426 PAS domain EQI29_13075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQI29_13080 PF02403 Seryl-tRNA synthetase N-terminal domain EQI29_13080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EQI29_13090 PF00478 IMP dehydrogenase / GMP reductase domain EQI29_13090 PF00571 CBS domain EQI29_13105 PF06071 Protein of unknown function (DUF933) EQI29_13105 PF01926 50S ribosome-binding GTPase EQI29_13110 PF06107 Bacterial protein of unknown function (DUF951) EQI29_13115 PF02195 ParB-like nuclease domain EQI29_13115 PF17762 HTH domain found in ParB protein EQI29_13120 PF13614 AAA domain EQI29_13125 PF02527 rRNA small subunit methyltransferase G EQI29_13130 PF13932 GidA associated domain EQI29_13130 PF01134 Glucose inhibited division protein A EQI29_13135 PF01926 50S ribosome-binding GTPase EQI29_13135 PF12631 MnmE helical domain EQI29_13135 PF10396 GTP-binding protein TrmE N-terminus EQI29_13145 PF01424 R3H domain EQI29_13145 PF14804 Jag N-terminus EQI29_13150 PF02096 60Kd inner membrane protein EQI29_13155 PF00825 Ribonuclease P EQI29_13160 PF00468 Ribosomal protein L34 EQI29_13185 PF18840 Large polyvalent protein associated domain 25 EQI29_13190 PF13154 Protein of unknown function (DUF3991) EQI29_13195 PF01131 DNA topoisomerase EQI29_13195 PF01751 Toprim domain EQI29_13210 PF00436 Single-strand binding protein family EQI29_13255 PF00872 Transposase, Mutator family EQI29_13300 PF00005 ABC transporter EQI29_13305 PF12704 MacB-like periplasmic core domain EQI29_13305 PF02687 FtsX-like permease family EQI29_13315 PF01726 LexA DNA binding domain EQI29_13315 PF00717 Peptidase S24-like EQI29_13325 PF17871 AAA lid domain EQI29_13325 PF00004 ATPase family associated with various cellular activities (AAA) EQI29_13325 PF07724 AAA domain (Cdc48 subfamily) EQI29_13325 PF10431 C-terminal, D2-small domain, of ClpB protein EQI29_13355 PF00872 Transposase, Mutator family EQI29_13360 PF00589 Phage integrase family EQI29_13370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EQI29_13380 PF00356 Bacterial regulatory proteins, lacI family EQI29_13385 PF01547 Bacterial extracellular solute-binding protein EQI29_13395 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_13400 PF11975 Family 4 glycosyl hydrolase C-terminal domain EQI29_13400 PF02056 Family 4 glycosyl hydrolase EQI29_13410 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_13415 PF00528 Binding-protein-dependent transport system inner membrane component EQI29_13420 PF16874 Glycosyl hydrolase family 36 C-terminal domain EQI29_13420 PF16875 Glycosyl hydrolase family 36 N-terminal domain EQI29_13430 PF00128 Alpha amylase, catalytic domain EQI29_13455 PF13495 Phage integrase, N-terminal SAM-like domain EQI29_13455 PF00589 Phage integrase family EQI29_13480 PF11799 impB/mucB/samB family C-terminal domain EQI29_13480 PF11798 IMS family HHH motif EQI29_13480 PF00817 impB/mucB/samB family EQI29_13505 PF01721 Class II bacteriocin EQI29_13545 PF00872 Transposase, Mutator family EQI29_13590 PF00239 Resolvase, N terminal domain EQI29_13590 PF02796 Helix-turn-helix domain of resolvase EQI29_13595 PF03649 Uncharacterised protein family (UPF0014) EQI29_13600 PF00005 ABC transporter EQI29_13605 PF07883 Cupin domain EQI29_13645 PF08951 Enterocin A Immunity EQI29_13650 PF00664 ABC transporter transmembrane region EQI29_13650 PF00005 ABC transporter EQI29_13650 PF03412 Peptidase C39 family EQI29_13660 PF00011 Hsp20/alpha crystallin family EQI29_13690 PF01751 Toprim domain EQI29_13690 PF01131 DNA topoisomerase EQI29_13695 PF00239 Resolvase, N terminal domain EQI29_13695 PF02796 Helix-turn-helix domain of resolvase EQI29_13715 PF00356 Bacterial regulatory proteins, lacI family EQI29_13720 PF00251 Glycosyl hydrolases family 32 N-terminal domain EQI29_13720 PF08244 Glycosyl hydrolases family 32 C terminal EQI29_13725 PF00367 phosphotransferase system, EIIB EQI29_13725 PF02378 Phosphotransferase system, EIIC EQI29_13725 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_13730 PF00480 ROK family EQI29_13745 PF00872 Transposase, Mutator family EQI29_13750 PF00403 Heavy-metal-associated domain EQI29_13755 PF00403 Heavy-metal-associated domain EQI29_13770 PF13545 Crp-like helix-turn-helix domain EQI29_13770 PF00027 Cyclic nucleotide-binding domain EQI29_13775 PF00210 Ferritin-like domain EQI29_13780 PF00872 Transposase, Mutator family EQI29_13795 PF13673 Acetyltransferase (GNAT) domain EQI29_13820 PF00005 ABC transporter EQI29_13855 PF03372 Endonuclease/Exonuclease/phosphatase family EQI29_13860 PF02378 Phosphotransferase system, EIIC EQI29_13860 PF00367 phosphotransferase system, EIIB EQI29_13860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQI29_13865 PF03636 Glycosyl hydrolase family 65, N-terminal domain EQI29_13865 PF03632 Glycosyl hydrolase family 65 central catalytic domain EQI29_13865 PF03633 Glycosyl hydrolase family 65, C-terminal domain EQI29_13870 PF13419 Haloacid dehalogenase-like hydrolase EQI29_13940 PF12102 Domain of unknown function (DUF3578) EQI29_13940 PF07728 AAA domain (dynein-related subfamily) EQI29_13945 PF13610 DDE domain EQI29_13955 PF00107 Zinc-binding dehydrogenase EQI29_13955 PF08240 Alcohol dehydrogenase GroES-like domain EQI29_13960 PF02817 e3 binding domain EQI29_13960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EQI29_13960 PF00364 Biotin-requiring enzyme EQI29_13965 PF02780 Transketolase, C-terminal domain EQI29_13965 PF02779 Transketolase, pyrimidine binding domain EQI29_13970 PF00676 Dehydrogenase E1 component EQI29_13975 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQI29_13975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQI29_13980 PF00158 Sigma-54 interaction domain EQI29_13980 PF02954 Bacterial regulatory protein, Fis family EQI29_13980 PF01590 GAF domain EQI29_13985 PF01751 Toprim domain EQI29_13985 PF01131 DNA topoisomerase EQI29_13990 PF00239 Resolvase, N terminal domain EQI29_13990 PF02796 Helix-turn-helix domain of resolvase EQI29_14045 PF01381 Helix-turn-helix EQI29_14050 PF00005 ABC transporter EQI29_14060 PF02673 Bacitracin resistance protein BacA EQI29_14090 PF02384 N-6 DNA Methylase EQI29_14090 PF12161 HsdM N-terminal domain EQI29_14095 PF09570 SinI restriction endonuclease EQI29_14110 PF00082 Subtilase family EQI29_14115 PF00082 Subtilase family EQI29_14115 PF02225 PA domain EQI29_14115 PF05922 Peptidase inhibitor I9 EQI29_14115 PF13860 FlgD Ig-like domain EQI29_14160 PF16874 Glycosyl hydrolase family 36 C-terminal domain EQI29_14160 PF16875 Glycosyl hydrolase family 36 N-terminal domain EQI29_14165 PF02311 AraC-like ligand binding domain EQI29_14165 PF12833 Helix-turn-helix domain EQI29_14220 PF17400 Family of unknown function (DUF5406) EQI29_14265 PF04203 Sortase domain EQI29_14315 PF12696 TraM recognition site of TraD and TraG EQI29_14395 PF01446 Replication protein