locus-tag	class	description
EQI29_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
EQI29_00010	COG0592	DNA-directed DNA polymerase activity
EQI29_00015	COG2501	S4 domain
EQI29_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
EQI29_00025	COG0187	DNA topoisomerase II activity
EQI29_00035	COG0360	Binds together with S18 to 16S ribosomal RNA
EQI29_00040	COG0629	single-stranded DNA binding
EQI29_00045	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
EQI29_00055	COG0359	binds to the 23S rRNA
EQI29_00060	COG0305	Participates in initiation and elongation during chromosome replication
EQI29_00065	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
EQI29_00075	COG0488	(ABC) transporter
EQI29_00090	COG0028	Belongs to the TPP enzyme family
EQI29_00115	COG4166	transmembrane transport
EQI29_00120	COG0601	transmembrane transport
EQI29_00125	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EQI29_00130	COG0444	Belongs to the ABC transporter superfamily
EQI29_00135	COG4608	Belongs to the ABC transporter superfamily
EQI29_00210	COG2723	6-phospho-beta-galactosidase activity
EQI29_00220	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_00220	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_00230	COG0519	Catalyzes the synthesis of GMP from XMP
EQI29_00230	COG0518	GMP synthase (glutamine-hydrolyzing) activity
EQI29_00235	COG1072	(Pantothenic acid kinase))
EQI29_00240	COG2813	Specifically methylates the guanine in position
EQI29_00250	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
EQI29_00255	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
EQI29_00260	COG0295	cytidine deaminase activity
EQI29_00265	COG1744	ABC transporter substrate-binding protein PnrA-like
EQI29_00285	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
EQI29_00310	COG0588	phosphoglycerate mutase activity
EQI29_00320	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
EQI29_00325	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
EQI29_00330	COG0049	tRNA binding
EQI29_00335	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
EQI29_00340	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
EQI29_00345	COG0051	transcription antitermination factor activity, RNA binding
EQI29_00350	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
EQI29_00355	COG0088	Forms part of the polypeptide exit tunnel
EQI29_00360	COG0089	rRNA binding
EQI29_00365	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
EQI29_00370	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
EQI29_00375	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
EQI29_00380	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
EQI29_00385	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
EQI29_00390	COG0255	Belongs to the universal ribosomal protein uL29 family
EQI29_00395	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
EQI29_00400	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
EQI29_00405	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
EQI29_00410	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
EQI29_00415	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
EQI29_00420	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
EQI29_00425	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
EQI29_00430	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
EQI29_00435	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
EQI29_00440	COG1841	ribosomal large subunit assembly
EQI29_00445	COG0200	Binds to the 23S rRNA
EQI29_00450	COG0201	protein transport
EQI29_00455	COG0563	adenylate kinase activity
EQI29_00460	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
EQI29_00465	COG0257	Belongs to the bacterial ribosomal protein bL36 family
EQI29_00470	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
EQI29_00475	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
EQI29_00480	COG0202	RNA polymerase activity
EQI29_00485	COG0203	ribosomal protein L17
EQI29_00490	COG1122	ATPase activity
EQI29_00495	COG1122	ATPase activity
EQI29_00505	COG0101	tRNA pseudouridine synthase activity
EQI29_00515	COG0227	Belongs to the bacterial ribosomal protein bL28 family
EQI29_00530	COG1461	Dihydroxyacetone kinase
EQI29_00535	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
EQI29_00540	COG0416	fatty acid biosynthetic process
EQI29_00545	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EQI29_00555	COG4608	Belongs to the ABC transporter superfamily
EQI29_00560	COG0601	transmembrane transport
EQI29_00565	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EQI29_00575	COG0571	ribonuclease III activity
EQI29_00580	COG1196	nuclear chromosome segregation
EQI29_00585	COG0561	phosphatase activity
EQI29_00590	COG0552	protein localization to endoplasmic reticulum
EQI29_00595	COG2918	glutathione biosynthetic process
EQI29_00595	COG1181	Belongs to the D-alanine--D-alanine ligase family
EQI29_00605	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EQI29_00610	COG4605	iron ion homeostasis
EQI29_00615	COG4604	ABC transporter, ATP-binding protein
EQI29_00620	COG4607	ABC-type enterochelin transport system periplasmic component
EQI29_00670	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
EQI29_00675	COG1380	Effector of murein hydrolase LrgA
EQI29_00680	COG1346	cytolysis
EQI29_00695	COG1028	Short-chain dehydrogenase reductase Sdr
EQI29_00705	COG1268	BioY protein
EQI29_00710	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
EQI29_00725	COG0561	phosphatase activity
EQI29_00730	COG1692	metallophosphoesterase
EQI29_00740	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
EQI29_00745	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
EQI29_00750	COG0424	maF-like protein
EQI29_00755	COG1263	PTS System
EQI29_00755	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_00760	COG2188	Transcriptional regulator
EQI29_00765	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EQI29_00770	COG0632	four-way junction helicase activity
EQI29_00775	COG2255	four-way junction helicase activity
EQI29_00785	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EQI29_00830	COG3279	Response regulator of the LytR AlgR family
EQI29_00865	COG1113	amino acid transport
EQI29_00870	COG1126	abc transporter atp-binding protein
EQI29_00875	COG0765	amino acid transport
EQI29_00890	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
EQI29_00895	COG0110	maltose O-acetyltransferase activity
EQI29_00900	COG1827	regulation of RNA biosynthetic process
EQI29_00920	COG0242	peptide deformylase activity
EQI29_00925	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
EQI29_00930	COG1185	polyribonucleotide nucleotidyltransferase activity
EQI29_00940	COG3158	transport of potassium into the cell
EQI29_00945	COG1253	flavin adenine dinucleotide binding
EQI29_00950	COG0534	Mate efflux family protein
EQI29_00960	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
EQI29_00965	COG1187	pseudouridine synthase activity
EQI29_00970	COG1011	Hydrolase
EQI29_00975	COG0572	uridine kinase
EQI29_00995	COG1671	Belongs to the UPF0178 family
EQI29_01010	COG1181	Belongs to the D-alanine--D-alanine ligase family
EQI29_01015	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
EQI29_01025	COG0736	holo-[acyl-carrier-protein] synthase activity
EQI29_01030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
EQI29_01035	COG2337	Toxic component of a toxin-antitoxin (TA) module
EQI29_01040	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
EQI29_01045	COG3321	synthase
EQI29_01045	COG0604	alcohol dehydrogenase
EQI29_01060	COG0531	amino acid
EQI29_01070	COG1174	glycine betaine transport
EQI29_01075	COG1732	Glycine betaine
EQI29_01090	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
EQI29_01105	COG0343	queuine tRNA-ribosyltransferase activity
EQI29_01110	COG1862	Preprotein translocase
EQI29_01120	COG1454	alcohol dehydrogenase
EQI29_01120	COG1012	belongs to the aldehyde dehydrogenase family
EQI29_01125	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
EQI29_01155	COG1917	Cupin 2, conserved barrel domain protein
EQI29_01155	COG2207	Transcriptional regulator
EQI29_01160	COG1070	Carbohydrate kinase
EQI29_01165	COG4806	L-rhamnose isomerase
EQI29_01170	COG0235	Class ii aldolase
EQI29_01175	COG3254	rhamnose metabolic process
EQI29_01180	COG1454	alcohol dehydrogenase
EQI29_01185	COG1414	Transcriptional regulator
EQI29_01190	COG0800	Aldolase
EQI29_01200	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
EQI29_01205	COG1028	Short-chain dehydrogenase reductase Sdr
EQI29_01210	COG1304	FMN binding
EQI29_01225	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
EQI29_01230	COG1428	Deoxynucleoside kinase
EQI29_01245	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
EQI29_01250	COG0291	Belongs to the bacterial ribosomal protein bL35 family
EQI29_01255	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
EQI29_01280	COG0824	Thioesterase
EQI29_01285	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
EQI29_01305	COG1363	Peptidase, m42
EQI29_01310	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
EQI29_01315	COG0589	response to stress
EQI29_01325	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EQI29_01330	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EQI29_01335	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
EQI29_01340	COG4807	Protein conserved in bacteria
EQI29_01350	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
EQI29_01365	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EQI29_01430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EQI29_01435	COG0800	Aldolase
EQI29_01440	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_01440	COG3711	transcriptional antiterminator
EQI29_01445	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EQI29_01480	COG3316	Transposase and inactivated derivatives
EQI29_01490	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
EQI29_01535	COG2321	neutral zinc metallopeptidase
EQI29_01545	COG3711	transcriptional antiterminator
EQI29_01545	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_01580	COG3546	catalase activity
EQI29_01590	COG2261	transglycosylase associated protein
EQI29_01595	COG1764	response to oxidative stress
EQI29_01610	COG1940	carbohydrate kinase activity
EQI29_01645	COG2217	Heavy metal translocating P-type atpase
EQI29_01660	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
EQI29_01695	COG0667	Aldo Keto reductase
EQI29_01700	COG2186	Transcriptional regulator
EQI29_01705	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_01710	COG2723	6-phospho-beta-galactosidase activity
EQI29_01720	COG1447	Phosphotransferase system cellobiose-specific component IIA
EQI29_01725	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_01745	COG1063	alcohol dehydrogenase
EQI29_01760	COG4716	Myosin-crossreactive antigen
EQI29_01785	COG1518	maintenance of DNA repeat elements
EQI29_01790	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
EQI29_01835	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
EQI29_01845	COG3052	prosthetic group binding
EQI29_01895	COG0191	fructose-bisphosphate aldolase activity
EQI29_01910	COG1051	belongs to the nudix hydrolase family
EQI29_01915	COG1846	Transcriptional regulator
EQI29_01940	COG2252	PERMEase
EQI29_01950	COG0366	Alpha amylase catalytic
EQI29_01960	COG1902	pentaerythritol trinitrate reductase activity
EQI29_01980	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
EQI29_01985	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
EQI29_01990	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
EQI29_01995	COG1193	negative regulation of DNA recombination
EQI29_02000	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
EQI29_02010	COG1937	Protein conserved in bacteria
EQI29_02015	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
EQI29_02020	COG0446	pyridine nucleotide-disulphide oxidoreductase
EQI29_02025	COG3973	AAA domain
EQI29_02060	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
EQI29_02065	COG2376	Dihydroxyacetone kinase
EQI29_02070	COG1461	Dihydroxyacetone kinase
EQI29_02115	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EQI29_02120	COG3559	Exporter of polyketide antibiotics
EQI29_02125	COG1131	(ABC) transporter
EQI29_02130	COG1309	transcriptional regulator
EQI29_02140	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
EQI29_02150	COG0531	amino acid
EQI29_02180	COG1609	Transcriptional regulator
EQI29_02190	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EQI29_02200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_02200	COG2190	(PTS) system
EQI29_02200	COG1263	PTS System
EQI29_02245	COG3479	Phenolic acid decarboxylase
EQI29_02250	COG1695	Transcriptional regulator
EQI29_02260	COG2814	Major facilitator Superfamily
EQI29_02285	COG0163	prenyltransferase activity
EQI29_02290	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
EQI29_02300	COG1136	(ABC) transporter
EQI29_02300	COG0577	efflux transmembrane transporter activity
EQI29_02300	COG0577	efflux transmembrane transporter activity
EQI29_02300	COG1136	(ABC) transporter
EQI29_02310	COG3850	Histidine kinase
EQI29_02310	COG5002	protein histidine kinase activity
EQI29_02330	COG1811	Na channel or pump
EQI29_02365	COG1136	(ABC) transporter
EQI29_02380	COG3942	CHAP domain
EQI29_02380	COG1705	Flagellar rod assembly protein muramidase FlgJ
EQI29_02385	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_02385	COG1263	PTS System
EQI29_02385	COG2190	(PTS) system
EQI29_02390	COG1869	D-ribose catabolic process
EQI29_02400	COG1609	Transcriptional regulator
EQI29_02420	COG0366	Alpha amylase catalytic
EQI29_02430	COG0628	permease
EQI29_02435	COG0803	Belongs to the bacterial solute-binding protein 9 family
EQI29_02435	COG3443	Belongs to the bacterial solute-binding protein 9 family
EQI29_02460	COG1428	Deoxynucleoside kinase
EQI29_02475	COG0210	DNA helicase
EQI29_02485	COG1393	Belongs to the ArsC family
EQI29_02490	COG1393	Belongs to the ArsC family
EQI29_02520	COG0386	Belongs to the glutathione peroxidase family
EQI29_02525	COG1854	S-ribosylhomocysteine lyase activity
EQI29_02530	COG0626	cystathionine gamma-synthase activity
EQI29_02535	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EQI29_02545	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
EQI29_02550	COG0484	heat shock protein binding
EQI29_02555	COG2015	COG2015, Alkyl sulfatase and related hydrolases
EQI29_02560	COG0019	diaminopimelate decarboxylase activity
EQI29_02565	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
EQI29_02570	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EQI29_02575	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
EQI29_02580	COG2171	N-acyltransferase activity
EQI29_02585	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
EQI29_02590	COG0527	aspartate kinase activity
EQI29_02595	COG1473	amidohydrolase
EQI29_02600	COG0436	Aminotransferase
EQI29_02605	COG0446	pyridine nucleotide-disulphide oxidoreductase
EQI29_02620	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
EQI29_02625	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
EQI29_02640	COG2207	Transcriptional regulator
EQI29_02645	COG2249	NAD(P)H dehydrogenase (quinone) activity
EQI29_02655	COG1113	amino acid transport
EQI29_02660	COG1121	(ABC) transporter
EQI29_02665	COG1108	ABC-type Mn2 Zn2 transport systems permease components
EQI29_02680	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
EQI29_02685	COG1652	LysM domain
EQI29_02685	COG2823	Periplasmic or secreted lipoprotein
EQI29_02700	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EQI29_02705	COG0477	Major facilitator Superfamily
EQI29_02715	COG1438	arginine binding
EQI29_02730	COG1764	response to oxidative stress
EQI29_02735	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EQI29_02755	COG2135	peptidase activity
EQI29_02770	COG3546	catalase activity
EQI29_02780	COG1175	transmembrane transport
EQI29_02785	COG0395	ABC-type sugar transport system, permease component
EQI29_02795	COG0671	phosphoesterase, PA-phosphatase related
EQI29_02825	COG0745	RESPONSE REGULATOR receiver
EQI29_02830	COG5002	protein histidine kinase activity
EQI29_02835	COG4975	Glucose uptake
EQI29_02840	COG0531	amino acid
EQI29_02845	COG3853	Toxic anion resistance protein (TelA)
EQI29_02870	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
EQI29_02875	COG1335	isochorismatase
EQI29_02890	COG3590	peptidase
EQI29_02900	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
EQI29_02905	COG1104	cysteine desulfurase activity
EQI29_02925	COG0482	sulfurtransferase activity
EQI29_02935	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
EQI29_02940	COG2814	Major facilitator Superfamily
EQI29_02960	COG0463	Glycosyl transferase, family 2
EQI29_02965	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EQI29_02970	COG2855	membrane
EQI29_02990	COG0583	DNA-binding transcription factor activity
EQI29_03000	COG0772	Belongs to the SEDS family
EQI29_03005	COG1393	Belongs to the ArsC family
EQI29_03010	COG0509	glycine decarboxylation via glycine cleavage system
EQI29_03015	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
EQI29_03020	COG2011	ABC-type metal ion transport system permease component
EQI29_03025	COG1464	Belongs to the NlpA lipoprotein family
EQI29_03035	COG0719	Fe-S assembly protein
EQI29_03040	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
EQI29_03050	COG0719	Fe-S assembly protein
EQI29_03070	COG1136	(ABC) transporter
EQI29_03070	COG0577	efflux transmembrane transporter activity
EQI29_03075	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EQI29_03085	COG1597	lipid kinase activity
EQI29_03135	COG3764	Sortase (surface protein transpeptidase)
EQI29_03140	COG3711	transcriptional antiterminator
EQI29_03145	COG1263	PTS System
EQI29_03145	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_03145	COG2190	(PTS) system
EQI29_03150	COG2723	6-phospho-beta-galactosidase activity
EQI29_03160	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_03170	COG3964	amidohydrolase
EQI29_03220	COG3711	transcriptional antiterminator
EQI29_03225	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_03225	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_03225	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_03255	COG1611	Belongs to the LOG family
EQI29_03265	COG1428	Deoxynucleoside kinase
EQI29_03280	COG2723	6-phospho-beta-galactosidase activity
EQI29_03290	COG1368	sulfuric ester hydrolase activity
EQI29_03305	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
EQI29_03310	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EQI29_03320	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
EQI29_03325	COG2011	ABC-type metal ion transport system permease component
EQI29_03330	COG1464	Belongs to the NlpA lipoprotein family
EQI29_03335	COG1473	amidohydrolase
EQI29_03355	COG1113	amino acid transport
EQI29_03365	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
EQI29_03375	COG0488	(ABC) transporter
EQI29_03380	COG0588	phosphoglycerate mutase activity
EQI29_03390	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
EQI29_03395	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_03395	COG1263	PTS System
EQI29_03410	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
EQI29_03415	COG1131	(ABC) transporter
EQI29_03435	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
EQI29_03450	COG0346	lactoylglutathione lyase activity
EQI29_03495	COG0561	phosphatase activity
EQI29_03500	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
EQI29_03505	COG0280	phosphate acetyltransferase
EQI29_03510	COG0802	atpase or kinase
EQI29_03515	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
EQI29_03535	COG0708	Exodeoxyribonuclease III
EQI29_03545	COG0812	UDP-N-acetylmuramate dehydrogenase activity
EQI29_03555	COG3328	transposase activity
EQI29_03575	COG1053	succinate dehydrogenase
EQI29_03590	COG0702	epimerase
EQI29_03595	COG4684	Psort location CytoplasmicMembrane, score
EQI29_03600	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
EQI29_03610	COG0604	alcohol dehydrogenase
EQI29_03620	COG3842	ATPase activity
EQI29_03625	COG1176	ABC-type spermidine putrescine transport system, permease component I
EQI29_03630	COG1177	transmembrane transport
EQI29_03635	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
EQI29_03645	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
EQI29_03655	COG0446	pyridine nucleotide-disulphide oxidoreductase
EQI29_03665	COG0488	(ABC) transporter
EQI29_03670	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
EQI29_03675	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
EQI29_03680	COG0701	Predicted permease
EQI29_03685	COG3689	TIGRFAM TIGR03943 family protein
EQI29_03715	COG4472	Bacterial protein of unknown function (DUF965)
EQI29_03720	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
EQI29_03725	COG3906	Belongs to the UPF0473 family
EQI29_03745	COG0281	malic enzyme
EQI29_03755	COG1304	FMN binding
EQI29_03795	COG0446	pyridine nucleotide-disulphide oxidoreductase
EQI29_03805	COG1136	(ABC) transporter
EQI29_03835	COG1131	(ABC) transporter
EQI29_03875	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
EQI29_03895	COG1193	negative regulation of DNA recombination
EQI29_03900	COG3118	belongs to the thioredoxin family
EQI29_03905	COG0322	excinuclease ABC activity
EQI29_03910	COG4152	abc transporter atp-binding protein
EQI29_03920	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
EQI29_03925	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
EQI29_03935	COG1269	ATP hydrolysis coupled proton transport
EQI29_03940	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
EQI29_03945	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
EQI29_03950	COG1527	subunit (C
EQI29_03955	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
EQI29_03960	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
EQI29_03965	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
EQI29_03970	COG1394	ATPase activity, coupled to movement of substances
EQI29_03975	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
EQI29_03980	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EQI29_03985	COG2423	ornithine cyclodeaminase activity
EQI29_03995	COG0346	lactoylglutathione lyase activity
EQI29_04000	COG0494	nUDIX hydrolase
EQI29_04005	COG0561	phosphatase activity
EQI29_04010	COG1078	dGTPase activity
EQI29_04015	COG0095	Lipoate-protein ligase
EQI29_04030	COG1595	DNA-templated transcription, initiation
EQI29_04040	COG0726	polysaccharide deacetylase
EQI29_04050	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
EQI29_04055	COG2390	Transcriptional regulator
EQI29_04065	COG0126	phosphoglycerate kinase activity
EQI29_04070	COG0149	triose-phosphate isomerase activity
EQI29_04085	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
EQI29_04105	COG2388	GCN5-related N-acetyl-transferase
EQI29_04110	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
EQI29_04120	COG0557	exoribonuclease II activity
EQI29_04125	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
EQI29_04130	COG0356	it plays a direct role in the translocation of protons across the membrane
EQI29_04135	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
EQI29_04140	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
EQI29_04145	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
EQI29_04150	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
EQI29_04155	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
EQI29_04160	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
EQI29_04165	COG0355	proton-transporting ATP synthase activity, rotational mechanism
EQI29_04175	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
EQI29_04195	COG1940	carbohydrate kinase activity
EQI29_04220	COG1739	Uncharacterized protein family UPF0029
EQI29_04230	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_04235	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
EQI29_04250	COG0653	protein targeting
EQI29_04260	COG2884	Cell division ATP-binding protein ftsE
EQI29_04265	COG2177	Part of the ABC transporter FtsEX involved in
EQI29_04270	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EQI29_04275	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
EQI29_04280	COG0573	inorganic phosphate transmembrane transporter activity
EQI29_04285	COG0581	inorganic phosphate transmembrane transporter activity
EQI29_04290	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
EQI29_04295	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
EQI29_04300	COG0704	Plays a role in the regulation of phosphate uptake
EQI29_04325	COG1950	PFAM Membrane protein of
EQI29_04330	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
EQI29_04335	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
EQI29_04340	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
EQI29_04345	COG1210	Utp--glucose-1-phosphate uridylyltransferase
EQI29_04355	COG4980	gas vesicle protein
EQI29_04365	COG1609	Transcriptional regulator
EQI29_04395	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
EQI29_04405	COG1914	H( )-stimulated, divalent metal cation uptake system
EQI29_04415	COG3763	UPF0154 protein
EQI29_04420	COG1132	(ABC) transporter
EQI29_04425	COG1132	(ABC) transporter
EQI29_04440	COG1263	PTS System
EQI29_04440	COG2190	(PTS) system
EQI29_04440	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_04445	COG1737	Transcriptional regulator
EQI29_04460	COG2723	6-phospho-beta-galactosidase activity
EQI29_04465	COG0492	ferredoxin-NADP+ reductase activity
EQI29_04470	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
EQI29_04475	COG0640	Transcriptional regulator
EQI29_04480	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
EQI29_04485	COG0735	belongs to the Fur family
EQI29_04490	COG0828	Belongs to the bacterial ribosomal protein bS21 family
EQI29_04495	COG1610	YqeY-like protein
EQI29_04500	COG1114	Component of the transport system for branched-chain amino acids
EQI29_04505	COG1702	phosphate starvation-inducible protein PhoH
EQI29_04515	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
EQI29_04520	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
EQI29_04525	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
EQI29_04530	COG1381	Involved in DNA repair and RecF pathway recombination
EQI29_04535	COG0752	glycyl-tRNA synthetase alpha subunit
EQI29_04540	COG0751	glycine-tRNA ligase activity
EQI29_04550	COG1316	TRANSCRIPTIONal
EQI29_04555	COG3944	biosynthesis protein
EQI29_04560	COG0489	protein tyrosine kinase activity
EQI29_04565	COG4464	protein tyrosine phosphatase activity
EQI29_04575	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
EQI29_04590	COG1086	Polysaccharide biosynthesis protein
EQI29_04610	COG0438	transferase activity, transferring glycosyl groups
EQI29_04625	COG0706	membrane insertase activity
EQI29_04635	COG1254	Belongs to the acylphosphatase family
EQI29_04640	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
EQI29_04660	COG0038	chloride channel
EQI29_04670	COG1686	Belongs to the peptidase S11 family
EQI29_04685	COG1278	Cold shock
EQI29_04690	COG1199	ATP-dependent helicase activity
EQI29_04690	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
EQI29_04700	COG0436	Aminotransferase
EQI29_04705	COG0017	Asparaginyl-tRNA synthetase
EQI29_04735	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
EQI29_04740	COG2217	Heavy metal translocating P-type atpase
EQI29_04745	COG0531	amino acid
EQI29_04760	COG3682	Transcriptional regulator
EQI29_04765	COG2608	mercury ion transmembrane transporter activity
EQI29_04770	COG2217	Heavy metal translocating P-type atpase
EQI29_04775	COG2217	Heavy metal translocating P-type atpase
EQI29_04780	COG1305	Transglutaminase-like
EQI29_04795	COG0714	Associated with various cellular activities
EQI29_04820	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
EQI29_04825	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
EQI29_04835	COG5002	protein histidine kinase activity
EQI29_04840	COG0745	RESPONSE REGULATOR receiver
EQI29_04845	COG1683	Conserved Protein
EQI29_04850	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
EQI29_04855	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
EQI29_04860	COG0519	Catalyzes the synthesis of GMP from XMP
EQI29_04865	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
EQI29_04870	COG0431	NADPH-dependent FMN reductase
EQI29_04875	COG1476	TRANSCRIPTIONal
EQI29_04885	COG1131	(ABC) transporter
EQI29_04895	COG0228	four-way junction DNA binding
EQI29_04900	COG1837	Belongs to the UPF0109 family
EQI29_04910	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
EQI29_04915	COG0336	Belongs to the RNA methyltransferase TrmD family
EQI29_04920	COG0335	large ribosomal subunit rRNA binding
EQI29_04995	COG2814	Major facilitator Superfamily
EQI29_05010	COG0028	Belongs to the TPP enzyme family
EQI29_05015	COG3527	Alpha-acetolactate decarboxylase
EQI29_05020	COG1956	GAF domain-containing protein
EQI29_05080	COG1396	sequence-specific DNA binding
EQI29_05325	COG0745	RESPONSE REGULATOR receiver
EQI29_05330	COG3850	Histidine kinase
EQI29_05330	COG5002	protein histidine kinase activity
EQI29_05345	COG1368	sulfuric ester hydrolase activity
EQI29_05350	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
EQI29_05355	COG0710	3-dehydroquinate dehydratase activity
EQI29_05360	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
EQI29_05365	COG2081	HI0933 family
EQI29_05370	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
EQI29_05375	COG0166	Belongs to the GPI family
EQI29_05395	COG1396	sequence-specific DNA binding
EQI29_05435	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
EQI29_05465	COG0584	glycerophosphoryl diester phosphodiesterase
EQI29_05475	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EQI29_05495	COG1309	transcriptional regulator
EQI29_05510	COG0367	asparagine synthase
EQI29_05515	COG4876	unkown
EQI29_05520	COG0267	Belongs to the bacterial ribosomal protein bL33 family
EQI29_05535	COG1120	ATPase activity
EQI29_05540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EQI29_05545	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EQI29_05550	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
EQI29_05565	COG1940	carbohydrate kinase activity
EQI29_05570	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
EQI29_05575	COG3189	MarR family transcriptional regulator
EQI29_05590	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
EQI29_05595	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
EQI29_05600	COG1609	Transcriptional regulator
EQI29_05605	COG1214	PFAM Peptidase M22, glycoprotease
EQI29_05615	COG0456	acetyltransferase
EQI29_05620	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
EQI29_05625	COG0489	protein tyrosine kinase activity
EQI29_05630	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EQI29_05635	COG2235	arginine
EQI29_05650	COG0018	arginyl-trna synthetase
EQI29_05665	COG1438	arginine binding
EQI29_05670	COG0052	Belongs to the universal ribosomal protein uS2 family
EQI29_05675	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
EQI29_05680	COG0528	UMP kinase activity
EQI29_05685	COG0233	cytoplasmic translational termination
EQI29_05690	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
EQI29_05695	COG4589	Belongs to the CDS family
EQI29_05700	COG0750	zinc metalloprotease
EQI29_05705	COG0442	prolyl-tRNA aminoacylation
EQI29_05710	COG2176	DNA-directed DNA polymerase activity
EQI29_05715	COG0779	Required for maturation of 30S ribosomal subunits
EQI29_05720	COG0195	Participates in both transcription termination and antitermination
EQI29_05725	COG2740	Nucleic-acid-binding protein implicated in transcription termination
EQI29_05740	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
EQI29_05745	COG1175	transmembrane transport
EQI29_05750	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
EQI29_05755	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
EQI29_05760	COG0196	riboflavin kinase activity
EQI29_05770	COG4975	Glucose uptake
EQI29_05780	COG5646	InterPro IPR014922
EQI29_05790	COG1619	proteins homologs of microcin C7 resistance protein MccF
EQI29_05810	COG1486	melibiose metabolic process
EQI29_05825	COG0693	protein deglycase activity
EQI29_05870	COG0635	Involved in the biosynthesis of porphyrin-containing compound
EQI29_05875	COG1420	regulation of RNA biosynthetic process
EQI29_05880	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
EQI29_05885	COG0443	Heat shock 70 kDa protein
EQI29_05890	COG0484	heat shock protein binding
EQI29_05905	COG1126	abc transporter atp-binding protein
EQI29_05910	COG0765	amino acid transport
EQI29_05920	COG0556	nucleotide-excision repair
EQI29_05925	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
EQI29_05935	COG1794	racemase activity, acting on amino acids and derivatives
EQI29_05940	COG1660	Displays ATPase and GTPase activities
EQI29_05945	COG0391	Required for morphogenesis under gluconeogenic growth conditions
EQI29_05950	COG1481	regulation of sporulation
EQI29_05980	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
EQI29_06010	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EQI29_06030	COG1714	RDD family
EQI29_06040	COG0544	peptidyl-prolyl cis-trans isomerase activity
EQI29_06045	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
EQI29_06050	COG0218	Necessary for normal cell division and for the maintenance of normal septation
EQI29_06065	COG1349	DNA-binding transcription factor activity
EQI29_06070	COG1105	Belongs to the carbohydrate kinase PfkB family
EQI29_06075	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_06075	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_06075	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_06080	COG0038	chloride channel
EQI29_06085	COG0210	DNA helicase
EQI29_06090	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
EQI29_06095	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
EQI29_06100	COG0154	amidase activity
EQI29_06105	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
EQI29_06110	COG1597	lipid kinase activity
EQI29_06115	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
EQI29_06125	COG1132	(ABC) transporter
EQI29_06135	COG0789	Transcriptional regulator
EQI29_06135	COG4978	Transcriptional regulator
EQI29_06140	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
EQI29_06145	COG0657	acetylesterase activity
EQI29_06165	COG3250	beta-galactosidase activity
EQI29_06175	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
EQI29_06185	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
EQI29_06190	COG0287	Prephenate dehydrogenase
EQI29_06195	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
EQI29_06200	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
EQI29_06205	COG0077	Prephenate dehydratase
EQI29_06210	COG2972	Histidine kinase
EQI29_06215	COG2207	Transcriptional regulator
EQI29_06215	COG4753	response regulator
EQI29_06260	COG0588	phosphoglycerate mutase activity
EQI29_06265	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EQI29_06295	COG2183	response to ionizing radiation
EQI29_06300	COG3091	SprT-like family
EQI29_06305	COG1434	Gram-negative-bacterium-type cell wall biogenesis
EQI29_06310	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
EQI29_06325	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
EQI29_06325	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
EQI29_06330	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
EQI29_06335	COG0237	dephospho-CoA kinase activity
EQI29_06345	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
EQI29_06355	COG1484	DNA-dependent DNA replication
EQI29_06365	COG2384	SAM-dependent methyltransferase
EQI29_06370	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
EQI29_06375	COG2195	Cleaves the N-terminal amino acid of tripeptides
EQI29_06380	COG1597	lipid kinase activity
EQI29_06395	COG0542	response to heat
EQI29_06415	COG0481	GTPase activity
EQI29_06440	COG1278	Cold shock
EQI29_06500	COG0584	glycerophosphoryl diester phosphodiesterase
EQI29_06505	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EQI29_06530	COG1073	alpha beta
EQI29_06535	COG2272	Belongs to the type-B carboxylesterase lipase family
EQI29_06545	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
EQI29_06550	COG1278	Cold shock
EQI29_06565	COG1476	TRANSCRIPTIONal
EQI29_06590	COG0561	phosphatase activity
EQI29_06595	COG1442	glycosyl transferase family 8
EQI29_06600	COG1442	glycosyl transferase family 8
EQI29_06615	COG1028	Short-chain dehydrogenase reductase Sdr
EQI29_06635	COG2261	transglycosylase associated protein
EQI29_06660	COG3655	Transcriptional regulator
EQI29_06675	COG3279	Response regulator of the LytR AlgR family
EQI29_06710	COG2261	transglycosylase associated protein
EQI29_06720	COG0004	ammonium transporteR
EQI29_06735	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
EQI29_06740	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EQI29_06755	COG1316	TRANSCRIPTIONal
EQI29_06760	COG0768	penicillin binding
EQI29_06790	COG0450	alkyl hydroperoxide reductase
EQI29_06805	COG1312	Catalyzes the dehydration of D-mannonate
EQI29_06820	COG0628	permease
EQI29_06825	COG1846	Transcriptional regulator
EQI29_06830	COG1764	response to oxidative stress
EQI29_06840	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
EQI29_06845	COG0366	Alpha amylase catalytic
EQI29_06850	COG2182	Extracellular solute-binding protein
EQI29_06855	COG1175	transmembrane transport
EQI29_06860	COG3833	ABC-type maltose transport systems, permease component
EQI29_06870	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
EQI29_06880	COG0167	dihydroorotate dehydrogenase activity
EQI29_06890	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EQI29_06895	COG0765	amino acid transport
EQI29_06915	COG0194	GDP metabolic process
EQI29_06920	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
EQI29_06975	COG2244	polysaccharide biosynthetic process
EQI29_06980	COG1307	EDD domain protein, DegV family
EQI29_06995	COG0366	Alpha amylase catalytic
EQI29_07000	COG4475	Protein of unknown function (DUF436)
EQI29_07010	COG0351	phosphomethylpyrimidine kinase
EQI29_07045	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EQI29_07050	COG5002	protein histidine kinase activity
EQI29_07055	COG0745	RESPONSE REGULATOR receiver
EQI29_07095	COG3711	transcriptional antiterminator
EQI29_07105	COG3037	sugar-specific permease SgaT UlaA
EQI29_07125	COG0039	L-malate dehydrogenase activity
EQI29_07155	COG1316	TRANSCRIPTIONal
EQI29_07160	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
EQI29_07165	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
EQI29_07170	COG4120	Belongs to the binding-protein-dependent transport system permease family
EQI29_07225	COG2222	sugar isomerase
EQI29_07230	COG3716	PTS system mannose fructose sorbose family IID component
EQI29_07235	COG3715	PTS system
EQI29_07250	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
EQI29_07260	COG0543	2 iron, 2 sulfur cluster binding
EQI29_07265	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
EQI29_07270	COG0505	Belongs to the CarA family
EQI29_07275	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
EQI29_07280	COG0540	Belongs to the ATCase OTCase family
EQI29_07285	COG2233	PERMEase
EQI29_07290	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
EQI29_07295	COG0564	pseudouridine synthase activity
EQI29_07300	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
EQI29_07320	COG1278	Cold shock
EQI29_07330	COG0328	RNA-DNA hybrid ribonuclease activity
EQI29_07340	COG4684	Psort location CytoplasmicMembrane, score
EQI29_07345	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
EQI29_07355	COG0513	Belongs to the DEAD box helicase family
EQI29_07370	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
EQI29_07380	COG0531	amino acid
EQI29_07385	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EQI29_07390	COG0156	8-amino-7-oxononanoate synthase activity
EQI29_07400	COG1418	mRNA catabolic process
EQI29_07405	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
EQI29_07410	COG0116	Belongs to the methyltransferase superfamily
EQI29_07420	COG3599	regulation of cell shape
EQI29_07425	COG4474	Belongs to the UPF0398 family
EQI29_07430	COG3331	DNA recombination
EQI29_07435	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
EQI29_07440	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
EQI29_07445	COG3935	DnaD domain protein
EQI29_07465	COG0446	pyridine nucleotide-disulphide oxidoreductase
EQI29_07470	COG0735	belongs to the Fur family
EQI29_07475	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EQI29_07480	COG1705	Flagellar rod assembly protein muramidase FlgJ
EQI29_07480	COG1388	LysM domain
EQI29_07495	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
EQI29_07505	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
EQI29_07510	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
EQI29_07510	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
EQI29_07515	COG5416	Lipopolysaccharide assembly protein A domain
EQI29_07520	COG0300	oxidoreductase activity
EQI29_07525	COG1234	tRNA 3'-trailer cleavage
EQI29_07535	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
EQI29_07565	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
EQI29_07570	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
EQI29_07575	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
EQI29_07580	COG0668	transmembrane transport
EQI29_07595	COG0517	IMP dehydrogenase activity
EQI29_07605	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
EQI29_07610	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
EQI29_07615	COG0765	amino acid transport
EQI29_07620	COG0765	amino acid transport
EQI29_07625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EQI29_07630	COG1126	abc transporter atp-binding protein
EQI29_07640	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EQI29_07640	COG0072	phenylalanine-tRNA ligase activity
EQI29_07645	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
EQI29_07650	COG1733	regulation of RNA biosynthetic process
EQI29_07655	COG1074	ATP-dependent DNA helicase activity
EQI29_07660	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
EQI29_07685	COG3328	transposase activity
EQI29_07690	COG4990	cell redox homeostasis
EQI29_07750	COG1388	LysM domain
EQI29_07750	COG3942	CHAP domain
EQI29_07770	COG2151	metal-sulfur cluster biosynthetic enzyme
EQI29_07775	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
EQI29_07780	COG1666	GTP binding
EQI29_07800	COG1968	undecaprenyl-diphosphatase activity
EQI29_07805	COG2217	Heavy metal translocating P-type atpase
EQI29_07810	COG2707	UPF0756 membrane protein
EQI29_07820	COG0268	Binds directly to 16S ribosomal RNA
EQI29_07825	COG1466	dna polymerase III delta subunit
EQI29_07830	COG0658	competence protein
EQI29_07830	COG2333	competence protein COMEC
EQI29_07835	COG2131	deaminase
EQI29_07840	COG1596	polysaccharide export
EQI29_07840	COG1555	photosystem II stabilization
EQI29_07845	COG3480	Lon protease (S16) C-terminal proteolytic domain
EQI29_07850	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
EQI29_07855	COG0742	ribosomal rna small subunit methyltransferase
EQI29_07860	COG4471	UPF0298 protein
EQI29_07875	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
EQI29_07880	COG0772	Belongs to the SEDS family
EQI29_07885	COG4838	Belongs to the UPF0358 family
EQI29_07890	COG0514	ATP-dependent DNA helicase (RecQ)
EQI29_07900	COG0483	inositol monophosphate 1-phosphatase activity
EQI29_07905	COG4476	Belongs to the UPF0223 family
EQI29_07920	COG0022	dehydrogenase e1 component
EQI29_07935	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EQI29_07940	COG0516	GMP reductase activity
EQI29_07945	COG4214	carbohydrate transport
EQI29_07965	COG2972	Histidine kinase
EQI29_07975	COG4989	oxidoreductase activity
EQI29_07980	COG0151	Belongs to the GarS family
EQI29_07985	COG0138	bifunctional purine biosynthesis protein purh
EQI29_07990	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
EQI29_07995	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
EQI29_08005	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
EQI29_08010	COG0047	phosphoribosylformylglycinamidine synthase activity
EQI29_08015	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
EQI29_08020	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
EQI29_08030	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
EQI29_08035	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
EQI29_08040	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
EQI29_08050	COG2233	PERMEase
EQI29_08055	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
EQI29_08060	COG0673	inositol 2-dehydrogenase activity
EQI29_08070	COG0395	ABC-type sugar transport system, permease component
EQI29_08075	COG1175	transmembrane transport
EQI29_08080	COG1653	transport
EQI29_08095	COG1876	peptidase activity
EQI29_08105	COG0673	inositol 2-dehydrogenase activity
EQI29_08120	COG2268	Band 7 protein
EQI29_08130	COG3290	protein histidine kinase activity
EQI29_08135	COG3290	protein histidine kinase activity
EQI29_08140	COG4565	transcriptional regulatory protein
EQI29_08155	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EQI29_08175	COG0436	Aminotransferase
EQI29_08200	COG3942	CHAP domain
EQI29_08200	COG1388	LysM domain
EQI29_08205	COG0084	hydrolase, TatD family'
EQI29_08210	COG1116	anion transmembrane transporter activity
EQI29_08220	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EQI29_08235	COG1732	Glycine betaine
EQI29_08255	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
EQI29_08265	COG1609	Transcriptional regulator
EQI29_08270	COG1073	alpha beta
EQI29_08280	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
EQI29_08300	COG1227	inorganic diphosphatase activity
EQI29_08305	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
EQI29_08310	COG1882	Formate acetyltransferase
EQI29_08320	COG0187	DNA topoisomerase II activity
EQI29_08325	COG1832	CoA-binding protein
EQI29_08330	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
EQI29_08340	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
EQI29_08345	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
EQI29_08350	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
EQI29_08355	COG4974	Belongs to the 'phage' integrase family
EQI29_08360	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
EQI29_08365	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
EQI29_08370	COG0758	DNA mediated transformation
EQI29_08375	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
EQI29_08380	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
EQI29_08410	COG0681	Belongs to the peptidase S26 family
EQI29_08415	COG4479	Belongs to the UPF0346 family
EQI29_08425	COG4698	Protein conserved in bacteria
EQI29_08430	COG2755	lipolytic protein G-D-S-L family
EQI29_08435	COG1307	EDD domain protein, DegV family
EQI29_08440	COG1272	protein, Hemolysin III
EQI29_08450	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
EQI29_08455	COG0488	(ABC) transporter
EQI29_08460	COG0025	NhaP-type Na H and K H
EQI29_08475	COG0617	tRNA 3'-terminal CCA addition
EQI29_08480	COG1694	Mazg nucleotide pyrophosphohydrolase
EQI29_08485	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
EQI29_08490	COG5582	Belongs to the UPF0302 family
EQI29_08495	COG0457	Tetratricopeptide repeat
EQI29_08505	COG0776	regulation of translation
EQI29_08510	COG1160	GTP binding
EQI29_08515	COG0539	negative regulation of cytoplasmic translation
EQI29_08520	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
EQI29_08530	COG0514	ATP-dependent DNA helicase (RecQ)
EQI29_08550	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
EQI29_08555	COG1288	antiporter activity
EQI29_08560	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
EQI29_08565	COG1187	pseudouridine synthase activity
EQI29_08570	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
EQI29_08575	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
EQI29_08585	COG4974	Belongs to the 'phage' integrase family
EQI29_08590	COG0735	belongs to the Fur family
EQI29_08595	COG2996	Protein conserved in bacteria
EQI29_08605	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
EQI29_08610	COG0358	DNA primase activity
EQI29_08615	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
EQI29_08625	COG0741	lytic transglycosylase activity
EQI29_08630	COG0596	Alpha beta hydrolase
EQI29_08635	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
EQI29_08635	COG0392	lysyltransferase activity
EQI29_08655	COG0656	L-ascorbic acid biosynthetic process
EQI29_08670	COG0823	Involved in the tonB-independent uptake of proteins
EQI29_08680	COG3425	synthase
EQI29_08685	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
EQI29_08690	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
EQI29_08695	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EQI29_08710	COG0351	phosphomethylpyrimidine kinase
EQI29_08720	COG1393	Belongs to the ArsC family
EQI29_08735	COG0589	response to stress
EQI29_08740	COG2723	6-phospho-beta-galactosidase activity
EQI29_08745	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_08750	COG2188	Transcriptional regulator
EQI29_08760	COG0346	lactoylglutathione lyase activity
EQI29_08780	COG3775	system Galactitol-specific IIC component
EQI29_08790	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_08795	COG1349	DNA-binding transcription factor activity
EQI29_08800	COG1105	Belongs to the carbohydrate kinase PfkB family
EQI29_08810	COG0789	Transcriptional regulator
EQI29_08815	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EQI29_08820	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EQI29_08825	COG4720	Psort location CytoplasmicMembrane, score
EQI29_08830	COG1122	ATPase activity
EQI29_08835	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
EQI29_08850	COG0456	acetyltransferase
EQI29_08860	COG3623	hexulose-6-phosphate isomerase
EQI29_08885	COG1349	DNA-binding transcription factor activity
EQI29_08895	COG1737	Transcriptional regulator
EQI29_08900	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_08900	COG1263	PTS System
EQI29_08905	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
EQI29_08930	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_09030	COG5002	protein histidine kinase activity
EQI29_09035	COG0745	RESPONSE REGULATOR receiver
EQI29_09040	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
EQI29_09045	COG0333	Belongs to the bacterial ribosomal protein bL32 family
EQI29_09055	COG0583	DNA-binding transcription factor activity
EQI29_09065	COG0205	6-phosphofructokinase activity
EQI29_09070	COG0587	DNA-directed DNA polymerase activity
EQI29_09080	COG2814	Major facilitator Superfamily
EQI29_09085	COG2252	PERMEase
EQI29_09090	COG0561	phosphatase activity
EQI29_09105	COG0768	penicillin binding
EQI29_09110	COG1737	Transcriptional regulator
EQI29_09115	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
EQI29_09125	COG1942	4-Oxalocrotonate Tautomerase
EQI29_09130	COG2217	Heavy metal translocating P-type atpase
EQI29_09135	COG3973	AAA domain
EQI29_09145	COG0217	transcriptional regulatory protein
EQI29_09150	COG1323	Belongs to the UPF0348 family
EQI29_09155	COG2226	methyltransferase
EQI29_09160	COG0799	negative regulation of ribosome biogenesis
EQI29_09165	COG1713	HD superfamily hydrolase involved in NAD metabolism
EQI29_09170	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
EQI29_09175	COG1534	Rna-binding protein
EQI29_09180	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
EQI29_09185	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
EQI29_09190	COG0825	malonyl-CoA metabolic process
EQI29_09195	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
EQI29_09200	COG0439	Biotin carboxylase
EQI29_09205	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
EQI29_09215	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
EQI29_09225	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
EQI29_09235	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
EQI29_09240	COG1846	Transcriptional regulator
EQI29_09245	COG0322	excinuclease ABC activity
EQI29_09250	COG4703	Protein of unknown function (DUF1797)
EQI29_09255	COG2084	Dehydrogenase
EQI29_09260	COG0438	transferase activity, transferring glycosyl groups
EQI29_09270	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
EQI29_09275	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_09280	COG0542	response to heat
EQI29_09300	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
EQI29_09310	COG1253	flavin adenine dinucleotide binding
EQI29_09315	COG0628	permease
EQI29_09325	COG3557	Belongs to the UPF0374 family
EQI29_09330	COG1194	a g-specific adenine glycosylase
EQI29_09335	COG2137	regulation of response to DNA damage stimulus
EQI29_09340	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
EQI29_09345	COG3397	chitin binding
EQI29_09350	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
EQI29_09355	COG1316	TRANSCRIPTIONal
EQI29_09360	COG1278	Cold shock
EQI29_09365	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
EQI29_09370	COG2246	polysaccharide biosynthetic process
EQI29_09395	COG0569	domain protein
EQI29_09405	COG4585	Histidine kinase
EQI29_09415	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
EQI29_09420	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
EQI29_09445	COG3475	LICD family
EQI29_09455	COG1216	Glycosyl transferase, family 2
EQI29_09470	COG3475	LICD family
EQI29_09475	COG1216	Glycosyl transferase, family 2
EQI29_09480	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
EQI29_09485	COG1216	Glycosyl transferase, family 2
EQI29_09485	COG0438	transferase activity, transferring glycosyl groups
EQI29_09490	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
EQI29_09500	COG1682	transport, permease protein
EQI29_09515	COG1091	dTDP-4-dehydrorhamnose reductase activity
EQI29_09520	COG1088	dTDP-glucose 4,6-dehydratase activity
EQI29_09525	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
EQI29_09530	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
EQI29_09535	COG1215	transferase activity, transferring glycosyl groups
EQI29_09550	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
EQI29_09555	COG1295	ribonuclease BN
EQI29_09560	COG0024	Methionine aminopeptidase
EQI29_09565	COG0716	FMN binding
EQI29_09575	COG2309	aminopeptidase activity
EQI29_09615	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_09620	COG1447	Phosphotransferase system cellobiose-specific component IIA
EQI29_09625	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_09630	COG3933	PFAM sigma-54 factor interaction domain-containing protein
EQI29_09630	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
EQI29_09635	COG0513	Belongs to the DEAD box helicase family
EQI29_09640	COG0673	inositol 2-dehydrogenase activity
EQI29_09660	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
EQI29_09665	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
EQI29_09670	COG3599	regulation of cell shape
EQI29_09675	COG2302	S4 RNA-binding domain
EQI29_09685	COG1799	cell septum assembly
EQI29_09690	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
EQI29_09725	COG0768	penicillin binding
EQI29_09760	COG0497	DNA recombination
EQI29_09765	COG1438	arginine binding
EQI29_09770	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
EQI29_09780	COG1722	exodeoxyribonuclease VII activity
EQI29_09785	COG1570	exodeoxyribonuclease VII activity
EQI29_09790	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
EQI29_09795	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
EQI29_09800	COG1302	Protein conserved in bacteria
EQI29_09805	COG0006	proline dipeptidase activity
EQI29_09810	COG2261	transglycosylase associated protein
EQI29_09820	COG3716	PTS system mannose fructose sorbose family IID component
EQI29_09825	COG3715	PTS system
EQI29_09835	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_09835	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_09840	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
EQI29_09840	COG3933	PFAM sigma-54 factor interaction domain-containing protein
EQI29_09845	COG0211	Belongs to the bacterial ribosomal protein bL27 family
EQI29_09855	COG0261	This protein binds to 23S rRNA in the presence of protein L20
EQI29_09865	COG0659	secondary active sulfate transmembrane transporter activity
EQI29_09870	COG3759	membrane
EQI29_09895	COG0095	Lipoate-protein ligase
EQI29_09900	COG1234	tRNA 3'-trailer cleavage
EQI29_09910	COG1363	Peptidase, m42
EQI29_09915	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
EQI29_09920	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EQI29_09925	COG1696	Membrane protein involved in D-alanine export
EQI29_09930	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EQI29_09945	COG1136	(ABC) transporter
EQI29_09950	COG1328	CTP reductase activity
EQI29_09960	COG0602	queuosine metabolic process
EQI29_09975	COG4467	Involved in initiation control of chromosome replication
EQI29_09980	COG1774	PSP1 C-terminal conserved region
EQI29_09985	COG0470	DNA polymerase III
EQI29_09990	COG3870	Protein conserved in bacteria
EQI29_09995	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
EQI29_10000	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
EQI29_10005	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
EQI29_10010	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
EQI29_10030	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EQI29_10040	COG2814	Major facilitator Superfamily
EQI29_10050	COG1349	DNA-binding transcription factor activity
EQI29_10070	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_10070	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_10150	COG0254	rRNA binding
EQI29_10155	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
EQI29_10160	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
EQI29_10175	COG0504	CTP synthase activity
EQI29_10185	COG0789	Transcriptional regulator
EQI29_10190	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
EQI29_10195	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
EQI29_10200	COG0584	glycerophosphoryl diester phosphodiesterase
EQI29_10210	COG0740	serine-type endopeptidase activity
EQI29_10215	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
EQI29_10225	COG1132	(ABC) transporter
EQI29_10250	COG1278	Cold shock
EQI29_10255	COG2003	Belongs to the UPF0758 family
EQI29_10260	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EQI29_10265	COG0285	dihydrofolate synthase activity
EQI29_10270	COG0525	valine-tRNA ligase activity
EQI29_10275	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
EQI29_10280	COG0301	tRNA thio-modification
EQI29_10285	COG1104	cysteine desulfurase activity
EQI29_10290	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
EQI29_10300	COG0561	phosphatase activity
EQI29_10305	COG1801	Protein of unknown function DUF72
EQI29_10325	COG3579	cysteine-type endopeptidase activity
EQI29_10400	COG1098	S1 RNA binding domain
EQI29_10405	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
EQI29_10415	COG0492	ferredoxin-NADP+ reductase activity
EQI29_10420	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
EQI29_10435	COG4470	Protein conserved in bacteria
EQI29_10440	COG0737	Belongs to the 5'-nucleotidase family
EQI29_10450	COG0590	tRNA wobble adenosine to inosine editing
EQI29_10455	COG2508	Transcriptional regulator
EQI29_10465	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
EQI29_10465	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
EQI29_10480	COG2738	Putative neutral zinc metallopeptidase
EQI29_10485	COG2824	Alkylphosphonate utilization operon protein PhnA
EQI29_10490	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
EQI29_10495	COG4109	DRTGG domain
EQI29_10500	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
EQI29_10520	COG0577	efflux transmembrane transporter activity
EQI29_10525	COG1136	(ABC) transporter
EQI29_10540	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
EQI29_10545	COG1288	antiporter activity
EQI29_10555	COG4821	SIS domain
EQI29_10570	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
EQI29_10575	COG3469	chitinase activity
EQI29_10585	COG3397	chitin binding
EQI29_10595	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EQI29_10600	COG3716	PTS system mannose fructose sorbose family IID component
EQI29_10620	COG3933	PFAM sigma-54 factor interaction domain-containing protein
EQI29_10620	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
EQI29_10645	COG1132	(ABC) transporter
EQI29_10650	COG1132	(ABC) transporter
EQI29_10660	COG1803	Methylglyoxal synthase
EQI29_10665	COG3842	ATPase activity
EQI29_10690	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
EQI29_10695	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
EQI29_10700	COG0084	hydrolase, TatD family'
EQI29_10705	COG0531	amino acid
EQI29_10720	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EQI29_10720	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EQI29_10740	COG0675	Transposase, IS605 OrfB family
EQI29_10745	COG4608	Belongs to the ABC transporter superfamily
EQI29_10750	COG0444	Belongs to the ABC transporter superfamily
EQI29_10755	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EQI29_10760	COG0601	transmembrane transport
EQI29_10770	COG4166	transmembrane transport
EQI29_10795	COG0820	rRNA (adenine-C2-)-methyltransferase activity
EQI29_10800	COG1674	ftsk spoiiie
EQI29_10805	COG2723	6-phospho-beta-galactosidase activity
EQI29_10810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EQI29_10815	COG1126	abc transporter atp-binding protein
EQI29_10820	COG0765	amino acid transport
EQI29_10855	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
EQI29_10865	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
EQI29_10870	COG0009	L-threonylcarbamoyladenylate synthase
EQI29_10875	COG2890	protein-(glutamine-N5) methyltransferase activity
EQI29_10880	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
EQI29_10885	COG1435	thymidine kinase activity
EQI29_10895	COG0681	Belongs to the peptidase S26 family
EQI29_10915	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
EQI29_10920	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
EQI29_10925	COG3442	glutamine amidotransferase
EQI29_10930	COG0246	Mannitol dehydrogenase
EQI29_10935	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_10940	COG2213	PTS system mannitol-specific
EQI29_10945	COG1129	ABC transporter
EQI29_10955	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_10960	COG3711	transcriptional antiterminator
EQI29_10965	COG2213	PTS system mannitol-specific
EQI29_10970	COG1482	cell wall glycoprotein biosynthetic process
EQI29_10985	COG1132	(ABC) transporter
EQI29_11005	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
EQI29_11010	COG0628	permease
EQI29_11020	COG2706	6-phosphogluconolactonase activity
EQI29_11030	COG1368	sulfuric ester hydrolase activity
EQI29_11040	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EQI29_11045	COG2160	L-arabinose isomerase activity
EQI29_11050	COG0235	Class ii aldolase
EQI29_11075	COG2211	Major facilitator Superfamily
EQI29_11080	COG3940	Belongs to the glycosyl hydrolase 43 family
EQI29_11090	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
EQI29_11095	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
EQI29_11145	COG0789	Transcriptional regulator
EQI29_11150	COG1609	Transcriptional regulator
EQI29_11160	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_11165	COG0459	protein refolding
EQI29_11170	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
EQI29_11180	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_11185	COG2910	NAD(P)H-binding
EQI29_11190	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
EQI29_11205	COG5002	protein histidine kinase activity
EQI29_11210	COG0745	RESPONSE REGULATOR receiver
EQI29_11215	COG1307	EDD domain protein, DegV family
EQI29_11235	COG3448	diguanylate cyclase activity
EQI29_11235	COG4175	Glycine betaine
EQI29_11265	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
EQI29_11270	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EQI29_11285	COG5492	domain, Protein
EQI29_11300	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_11300	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_11305	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
EQI29_11315	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_11320	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_11320	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_11320	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_11325	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_11345	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
EQI29_11365	COG0628	permease
EQI29_11370	COG1285	pathogenesis
EQI29_11375	COG0363	glucosamine-6-phosphate deaminase activity
EQI29_11380	COG0488	(ABC) transporter
EQI29_11385	COG2814	Major facilitator Superfamily
EQI29_11395	COG0222	ribosome binding
EQI29_11400	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
EQI29_11405	COG0081	regulation of translation
EQI29_11410	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
EQI29_11415	COG1760	l-serine dehydratase
EQI29_11420	COG1760	l-serine dehydratase
EQI29_11435	COG0250	Participates in transcription elongation, termination and antitermination
EQI29_11445	COG0267	Belongs to the bacterial ribosomal protein bL33 family
EQI29_11460	COG1597	lipid kinase activity
EQI29_11465	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EQI29_11475	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
EQI29_11485	COG3142	Participates in the control of copper homeostasis
EQI29_11490	COG2239	Acts as a magnesium transporter
EQI29_11495	COG0564	pseudouridine synthase activity
EQI29_11500	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
EQI29_11505	COG2357	RelA SpoT domain protein
EQI29_11510	COG4116	CYTH
EQI29_11530	COG4862	establishment of competence for transformation
EQI29_11535	COG1393	Belongs to the ArsC family
EQI29_11550	COG0419	ATPase involved in DNA repair
EQI29_11555	COG0420	3'-5' exonuclease activity
EQI29_11565	COG0204	Acyl-transferase
EQI29_11570	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
EQI29_11575	COG2827	Endonuclease containing a URI domain
EQI29_11585	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
EQI29_11590	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
EQI29_11595	COG0124	histidyl-tRNA synthetase
EQI29_11605	COG0667	Aldo Keto reductase
EQI29_11610	COG2124	cytochrome p450
EQI29_11615	COG1490	D-aminoacyl-tRNA deacylase activity
EQI29_11620	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EQI29_11630	COG1385	rRNA (uridine-N3-)-methyltransferase activity
EQI29_11635	COG2264	protein methyltransferase activity
EQI29_11645	COG2094	Belongs to the DNA glycosylase MPG family
EQI29_11650	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
EQI29_11665	COG0589	response to stress
EQI29_11670	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
EQI29_11675	COG0827	DNA restriction-modification system
EQI29_11700	COG4537	Required for transformation and DNA binding
EQI29_11705	COG1459	type II secretion system
EQI29_11710	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
EQI29_11720	COG0220	tRNA (guanine-N7-)-methyltransferase activity
EQI29_11730	COG4473	ABC transporter
EQI29_11735	COG1131	(ABC) transporter
EQI29_11740	COG0537	adenosine 5'-monophosphoramidase activity
EQI29_11750	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EQI29_11755	COG3481	metal-dependent phosphohydrolase, HD sub domain
EQI29_11760	COG4717	serine-type aminopeptidase activity
EQI29_11765	COG0420	3'-5' exonuclease activity
EQI29_11770	COG0561	phosphatase activity
EQI29_11795	COG2211	Major facilitator Superfamily
EQI29_11820	COG1073	alpha beta
EQI29_11845	COG4209	transmembrane transport
EQI29_11850	COG0395	ABC-type sugar transport system, permease component
EQI29_11860	COG1609	Transcriptional regulator
EQI29_11870	COG2721	sulfolactate sulfo-lyase activity
EQI29_11875	COG1904	glucuronate isomerase
EQI29_11880	COG2755	lipolytic protein G-D-S-L family
EQI29_11890	COG1132	(ABC) transporter
EQI29_11895	COG3679	Belongs to the UPF0342 family
EQI29_11900	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
EQI29_11905	COG0564	pseudouridine synthase activity
EQI29_11910	COG1940	carbohydrate kinase activity
EQI29_11915	COG0383	alpha-mannosidase activity
EQI29_11935	COG2207	Transcriptional regulator
EQI29_11935	COG4753	response regulator
EQI29_11940	COG2972	Histidine kinase
EQI29_11955	COG0395	ABC-type sugar transport system, permease component
EQI29_11965	COG1187	pseudouridine synthase activity
EQI29_11970	COG2244	polysaccharide biosynthetic process
EQI29_11980	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
EQI29_11990	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
EQI29_12005	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_12005	COG3711	transcriptional antiterminator
EQI29_12020	COG0495	leucyl-tRNA aminoacylation
EQI29_12030	COG1388	LysM domain
EQI29_12030	COG1705	Flagellar rod assembly protein muramidase FlgJ
EQI29_12035	COG0671	phosphoesterase, PA-phosphatase related
EQI29_12040	COG1242	4 iron, 4 sulfur cluster binding
EQI29_12045	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
EQI29_12050	COG1132	(ABC) transporter
EQI29_12055	COG1132	(ABC) transporter
EQI29_12070	COG0477	Major facilitator Superfamily
EQI29_12080	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
EQI29_12230	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
EQI29_12235	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
EQI29_12240	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
EQI29_12255	COG0037	tRNA processing
EQI29_12260	COG1098	S1 RNA binding domain
EQI29_12270	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
EQI29_12275	COG2244	polysaccharide biosynthetic process
EQI29_12280	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
EQI29_12285	COG0193	aminoacyl-tRNA hydrolase activity
EQI29_12290	COG0039	L-malate dehydrogenase activity
EQI29_12300	COG0217	transcriptional regulatory protein
EQI29_12325	COG1792	Involved in formation and maintenance of cell shape
EQI29_12335	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
EQI29_12340	COG1162	GTPase activity
EQI29_12345	COG0515	serine threonine protein kinase
EQI29_12345	COG2815	serine threonine protein kinase
EQI29_12350	COG0631	protein serine/threonine phosphatase activity
EQI29_12355	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
EQI29_12355	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
EQI29_12360	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
EQI29_12365	COG0242	peptide deformylase activity
EQI29_12370	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
EQI29_12375	COG1758	RNA polymerase activity
EQI29_12380	COG0194	GDP metabolic process
EQI29_12390	COG1561	YicC-like family, N-terminal region
EQI29_12400	COG1752	Esterase of the alpha-beta hydrolase superfamily
EQI29_12415	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
EQI29_12420	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
EQI29_12430	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
EQI29_12435	COG1108	ABC-type Mn2 Zn2 transport systems permease components
EQI29_12440	COG1121	(ABC) transporter
EQI29_12445	COG0803	Belongs to the bacterial solute-binding protein 9 family
EQI29_12445	COG3443	Belongs to the bacterial solute-binding protein 9 family
EQI29_12450	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
EQI29_12455	COG0392	lysyltransferase activity
EQI29_12455	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
EQI29_12460	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
EQI29_12465	COG1418	mRNA catabolic process
EQI29_12470	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
EQI29_12475	COG1546	Belongs to the CinA family
EQI29_12475	COG1058	Belongs to the CinA family
EQI29_12480	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
EQI29_12490	COG1426	Protein conserved in bacteria
EQI29_12495	COG0612	Peptidase, M16
EQI29_12500	COG0612	Peptidase, M16
EQI29_12505	COG1970	mechanosensitive ion channel activity
EQI29_12510	COG2153	protein acetylation
EQI29_12515	COG4466	Protein conserved in bacteria
EQI29_12525	COG3688	RNA-binding protein containing a PIN domain
EQI29_12535	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
EQI29_12540	COG0215	cysteine-tRNA ligase activity
EQI29_12545	COG1045	serine acetyltransferase
EQI29_12550	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
EQI29_12555	COG4956	integral membrane protein (PIN domain superfamily)
EQI29_12565	COG0756	dUTP diphosphatase activity
EQI29_12570	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
EQI29_12575	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
EQI29_12595	COG2814	Major facilitator Superfamily
EQI29_12620	COG0778	Nitroreductase
EQI29_12635	COG1388	LysM domain
EQI29_12635	COG1705	Flagellar rod assembly protein muramidase FlgJ
EQI29_12640	COG1388	LysM domain
EQI29_12640	COG1705	Flagellar rod assembly protein muramidase FlgJ
EQI29_12645	COG3711	transcriptional antiterminator
EQI29_12650	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_12650	COG2190	(PTS) system
EQI29_12650	COG1263	PTS System
EQI29_12660	COG0702	epimerase
EQI29_12685	COG4499	WXG100 protein secretion system (Wss), protein YukC
EQI29_12700	COG1511	domain protein
EQI29_12700	COG0842	Transport permease protein
EQI29_12705	COG4842	Belongs to the WXG100 family
EQI29_12715	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
EQI29_12725	COG0604	alcohol dehydrogenase
EQI29_12730	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
EQI29_12740	COG0842	Transport permease protein
EQI29_12745	COG1131	(ABC) transporter
EQI29_12755	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
EQI29_12760	COG0383	alpha-mannosidase activity
EQI29_12765	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_12770	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_12775	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_12775	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EQI29_12775	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_12780	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
EQI29_12780	COG3711	transcriptional antiterminator
EQI29_12825	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EQI29_12830	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
EQI29_12835	COG0783	Belongs to the Dps family
EQI29_12840	COG1070	Carbohydrate kinase
EQI29_12845	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
EQI29_12850	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EQI29_12860	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EQI29_12865	COG0085	RNA polymerase activity
EQI29_12880	COG4120	Belongs to the binding-protein-dependent transport system permease family
EQI29_12895	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
EQI29_12895	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
EQI29_12930	COG0142	geranyltranstransferase activity
EQI29_12950	COG4939	FMN-binding domain protein
EQI29_12980	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EQI29_12995	COG0542	response to heat
EQI29_13000	COG4463	regulation of RNA biosynthetic process
EQI29_13080	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
EQI29_13105	COG0012	GTP binding
EQI29_13110	COG4481	Protein conserved in bacteria
EQI29_13115	COG1475	DNA binding
EQI29_13120	COG1192	Involved in chromosome partitioning
EQI29_13125	COG0357	Ribosomal RNA small subunit methyltransferase G
EQI29_13130	COG0445	tRNA wobble uridine modification
EQI29_13135	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
EQI29_13145	COG1847	R3H domain protein
EQI29_13150	COG0706	membrane insertase activity
EQI29_13155	COG0594	ribonuclease P activity
EQI29_13160	COG0230	Belongs to the bacterial ribosomal protein bL34 family
EQI29_13210	COG0629	single-stranded DNA binding
EQI29_13255	COG3328	transposase activity
EQI29_13300	COG1136	(ABC) transporter
EQI29_13305	COG0577	efflux transmembrane transporter activity
EQI29_13315	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
EQI29_13355	COG3328	transposase activity
EQI29_13360	COG0582	viral genome integration into host DNA
EQI29_13370	COG0346	lactoylglutathione lyase activity
EQI29_13380	COG1609	Transcriptional regulator
EQI29_13395	COG0395	ABC-type sugar transport system, permease component
EQI29_13400	COG1486	melibiose metabolic process
EQI29_13410	COG1175	transmembrane transport
EQI29_13415	COG0395	ABC-type sugar transport system, permease component
EQI29_13430	COG0366	Alpha amylase catalytic
EQI29_13480	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
EQI29_13545	COG3328	transposase activity
EQI29_13595	COG0390	transport system, permease component
EQI29_13600	COG4619	ABC transporter
EQI29_13605	COG0662	Cupin 2, conserved barrel domain protein
EQI29_13660	COG0071	Belongs to the small heat shock protein (HSP20) family
EQI29_13690	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
EQI29_13715	COG1609	Transcriptional regulator
EQI29_13720	COG1621	beta-fructofuranosidase activity
EQI29_13725	COG1263	PTS System
EQI29_13725	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_13725	COG2190	(PTS) system
EQI29_13730	COG1940	carbohydrate kinase activity
EQI29_13745	COG3328	transposase activity
EQI29_13755	COG2217	Heavy metal translocating P-type atpase
EQI29_13770	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EQI29_13775	COG0783	Belongs to the Dps family
EQI29_13780	COG3328	transposase activity
EQI29_13820	COG1131	(ABC) transporter
EQI29_13860	COG1263	PTS System
EQI29_13860	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
EQI29_13860	COG2190	(PTS) system
EQI29_13870	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EQI29_13940	COG1401	restriction endodeoxyribonuclease activity
EQI29_13945	COG3316	Transposase and inactivated derivatives
EQI29_13955	COG1063	alcohol dehydrogenase
EQI29_13960	COG0508	dehydrogenase complex catalyzes the overall conversion of
EQI29_13965	COG0022	dehydrogenase e1 component
EQI29_13970	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
EQI29_13975	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EQI29_13980	COG3284	Transcriptional regulator
EQI29_13985	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
EQI29_13985	COG0551	DNA topoisomerase type I activity
EQI29_14115	COG1404	Belongs to the peptidase S8 family
EQI29_14165	COG2207	Transcriptional regulator