locus-tag class description AM338_00020 PF12833 Helix-turn-helix domain AM338_00030 PF14488 Domain of unknown function (DUF4434) AM338_00035 PF13283 Bacteriophage N adsorption protein A C-term AM338_00040 PF13632 Glycosyl transferase family group 2 AM338_00040 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM338_00045 PF00672 HAMP domain AM338_00045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_00045 PF00512 His Kinase A (phospho-acceptor) domain AM338_00050 PF00486 Transcriptional regulatory protein, C terminal AM338_00050 PF00072 Response regulator receiver domain AM338_00060 PF02321 Outer membrane efflux protein AM338_00065 PF11604 Copper binding periplasmic protein CusF AM338_00070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_00070 PF00529 HlyD membrane-fusion protein of T1SS AM338_00075 PF00873 AcrB/AcrD/AcrF family AM338_00080 PF00324 Amino acid permease AM338_00085 PF00924 Mechanosensitive ion channel AM338_00090 PF00881 Nitroreductase family AM338_00100 PF13610 DDE domain AM338_00120 PF00483 Nucleotidyl transferase AM338_00125 PF16363 GDP-mannose 4,6 dehydratase AM338_00135 PF01061 ABC-2 type transporter AM338_00140 PF00005 ABC transporter AM338_00145 PF00534 Glycosyl transferases group 1 AM338_00150 PF13477 Glycosyl transferase 4-like AM338_00150 PF00534 Glycosyl transferases group 1 AM338_00175 PF00534 Glycosyl transferases group 1 AM338_00180 PF13737 Transposase DDE domain AM338_00190 PF13693 Winged helix-turn-helix DNA-binding AM338_00210 PF13610 DDE domain AM338_00215 PF04107 Glutamate-cysteine ligase family 2(GCS2) AM338_00230 PF01848 Hok/gef family AM338_00235 PF01609 Transposase DDE domain AM338_00240 PF01648 4'-phosphopantetheinyl transferase superfamily AM338_00240 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AM338_00245 PF07715 TonB-dependent Receptor Plug Domain AM338_00245 PF00593 TonB dependent receptor AM338_00250 PF11806 Domain of unknown function (DUF3327) AM338_00250 PF00756 Putative esterase AM338_00255 PF03621 MbtH-like protein AM338_00260 PF13193 AMP-binding enzyme C-terminal domain AM338_00260 PF00668 Condensation domain AM338_00260 PF00550 Phosphopantetheine attachment site AM338_00260 PF00975 Thioesterase domain AM338_00260 PF00501 AMP-binding enzyme AM338_00265 PF02706 Chain length determinant protein AM338_00270 PF00005 ABC transporter AM338_00275 PF01032 FecCD transport family AM338_00280 PF01032 FecCD transport family AM338_00285 PF05977 Transmembrane secretion effector AM338_00290 PF01497 Periplasmic binding protein AM338_00300 PF00425 chorismate binding enzyme AM338_00305 PF00501 AMP-binding enzyme AM338_00305 PF13193 AMP-binding enzyme C-terminal domain AM338_00310 PF00857 Isochorismatase family AM338_00310 PF00550 Phosphopantetheine attachment site AM338_00320 PF03061 Thioesterase superfamily AM338_00325 PF02554 Carbon starvation protein CstA AM338_00325 PF13722 5TM C-terminal transporter carbon starvation CstA AM338_00330 PF04328 Selenoprotein, putative AM338_00335 PF00465 Iron-containing alcohol dehydrogenase AM338_00340 PF00155 Aminotransferase class I and II AM338_00345 PF02195 ParB-like nuclease domain AM338_00350 PF11922 Domain of unknown function (DUF3440) AM338_00350 PF01507 Phosphoadenosine phosphosulfate reductase family AM338_00355 PF03466 LysR substrate binding domain AM338_00355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_00365 PF13098 Thioredoxin-like domain AM338_00370 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM338_00370 PF00578 AhpC/TSA family AM338_00375 PF13192 Thioredoxin domain AM338_00375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_00380 PF00582 Universal stress protein family AM338_00400 PF08240 Alcohol dehydrogenase GroES-like domain AM338_00400 PF13823 Alcohol dehydrogenase GroES-associated AM338_00400 PF00107 Zinc-binding dehydrogenase AM338_00410 PF14760 Rnk N-terminus AM338_00410 PF01272 Transcription elongation factor, GreA/GreB, C-term AM338_00420 PF00445 Ribonuclease T2 family AM338_00425 PF00939 Sodium:sulfate symporter transmembrane region AM338_00430 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM338_00435 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase AM338_00440 PF04223 Citrate lyase, alpha subunit (CitF) AM338_00445 PF03328 HpcH/HpaI aldolase/citrate lyase family AM338_00450 PF06857 Malonate decarboxylase delta subunit (MdcD) AM338_00455 PF08218 Citrate lyase ligase C-terminal domain AM338_00460 PF00989 PAS fold AM338_00460 PF17203 Single cache domain 3 AM338_00460 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AM338_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_00465 PF12431 Transcriptional regulator AM338_00465 PF00072 Response regulator receiver domain AM338_00470 PF03606 C4-dicarboxylate anaerobic carrier AM338_00480 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP AM338_00485 PF00313 'Cold-shock' DNA-binding domain AM338_00490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM338_00500 PF02416 mttA/Hcf106 family AM338_00505 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AM338_00505 PF04055 Radical SAM superfamily AM338_00515 PF03466 LysR substrate binding domain AM338_00515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_00525 PF03099 Biotin/lipoate A/B protein ligase family AM338_00530 PF04359 Protein of unknown function (DUF493) AM338_00535 PF00768 D-alanyl-D-alanine carboxypeptidase AM338_00535 PF07943 Penicillin-binding protein 5, C-terminal domain AM338_00540 PF05036 Sporulation related domain AM338_00540 PF03330 Lytic transglycolase AM338_00545 PF01098 Cell cycle protein AM338_00550 PF00905 Penicillin binding protein transpeptidase domain AM338_00550 PF03717 Penicillin-binding Protein dimerisation domain AM338_00555 PF02590 Predicted SPOUT methyltransferase AM338_00565 PF00300 Histidine phosphatase superfamily (branch 1) AM338_00570 PF01467 Cytidylyltransferase-like AM338_00575 PF06144 DNA polymerase III, delta subunit AM338_00575 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AM338_00580 PF04390 Lipopolysaccharide-assembly AM338_00585 PF00133 tRNA synthetases class I (I, L, M and V) AM338_00585 PF13603 Leucyl-tRNA synthetase, Domain 2 AM338_00585 PF08264 Anticodon-binding domain of tRNA AM338_00590 PF07295 Zinc-ribbon containing domain AM338_00595 PF08238 Sel1 repeat AM338_00600 PF06889 Protein of unknown function (DUF1266) AM338_00610 PF08238 Sel1 repeat AM338_00615 PF06889 Protein of unknown function (DUF1266) AM338_00625 PF00012 Hsp70 protein AM338_00630 PF01156 Inosine-uridine preferring nucleoside hydrolase AM338_00635 PF00005 ABC transporter AM338_00640 PF00528 Binding-protein-dependent transport system inner membrane component AM338_00645 PF00528 Binding-protein-dependent transport system inner membrane component AM338_00650 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_00655 PF00795 Carbon-nitrogen hydrolase AM338_00660 PF03471 Transporter associated domain AM338_00660 PF00571 CBS domain AM338_00665 PF02130 Uncharacterized protein family UPF0054 AM338_00670 PF02562 PhoH-like protein AM338_00675 PF04055 Radical SAM superfamily AM338_00675 PF01938 TRAM domain AM338_00675 PF00919 Uncharacterized protein family UPF0004 AM338_00680 PF01494 FAD binding domain AM338_00725 PF00733 Asparagine synthase AM338_00725 PF13537 Glutamine amidotransferase domain AM338_00735 PF13344 Haloacid dehalogenase-like hydrolase AM338_00740 PF01047 MarR family AM338_00740 PF00480 ROK family AM338_00745 PF01979 Amidohydrolase family AM338_00750 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM338_00755 PF00367 phosphotransferase system, EIIB AM338_00755 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM338_00755 PF02378 Phosphotransferase system, EIIC AM338_00760 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM338_00760 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AM338_00765 PF03573 outer membrane porin, OprD family AM338_00770 PF13982 YbfN-like lipoprotein AM338_00775 PF01475 Ferric uptake regulator family AM338_00785 PF00258 Flavodoxin AM338_00790 PF01402 Ribbon-helix-helix protein, copG family AM338_00795 PF12697 Alpha/beta hydrolase family AM338_00800 PF03925 SeqA protein C-terminal domain AM338_00800 PF17206 SeqA protein N-terminal domain AM338_00805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM338_00805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM338_00805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM338_00805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM338_00815 PF10946 Protein of unknown function DUF2625 AM338_00825 PF13520 Amino acid permease AM338_00840 PF00072 Response regulator receiver domain AM338_00840 PF00486 Transcriptional regulatory protein, C terminal AM338_00845 PF13492 GAF domain AM338_00845 PF13493 Domain of unknown function (DUF4118) AM338_00845 PF00512 His Kinase A (phospho-acceptor) domain AM338_00845 PF02702 Osmosensitive K+ channel His kinase sensor domain AM338_00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_00850 PF02669 K+-transporting ATPase, c chain AM338_00860 PF03814 Potassium-transporting ATPase A subunit AM338_00865 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) AM338_00870 PF10725 Protein of unknown function (DUF2517) AM338_00875 PF05593 RHS Repeat AM338_00875 PF03527 RHS protein AM338_00910 PF08349 Protein of unknown function (DUF1722) AM338_00915 PF00875 DNA photolyase AM338_00915 PF03441 FAD binding domain of DNA photolyase AM338_00920 PF00854 POT family AM338_00925 PF01784 NIF3 (NGG1p interacting factor 3) AM338_00930 PF02682 Carboxyltransferase domain, subdomain C and D AM338_00935 PF02626 Carboxyltransferase domain, subdomain A and B AM338_00940 PF03746 LamB/YcsF family AM338_00945 PF06827 Zinc finger found in FPG and IleRS AM338_00945 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM338_00945 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM338_00950 PF05145 Transition state regulatory protein AbrB AM338_00955 PF00419 Fimbrial protein AM338_00960 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_00960 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_00965 PF13953 PapC C-terminal domain AM338_00965 PF13954 PapC N-terminal domain AM338_00965 PF00577 Outer membrane usher protein AM338_00970 PF00419 Fimbrial protein AM338_00975 PF00285 Citrate synthase, C-terminal domain AM338_00990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM338_00995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM338_01000 PF02910 Fumarate reductase flavoprotein C-term AM338_01000 PF00890 FAD binding domain AM338_01005 PF13085 2Fe-2S iron-sulfur cluster binding domain AM338_01010 PF16870 2-oxoglutarate dehydrogenase C-terminal AM338_01010 PF16078 2-oxoglutarate dehydrogenase N-terminus AM338_01010 PF02779 Transketolase, pyrimidine binding domain AM338_01010 PF00676 Dehydrogenase E1 component AM338_01015 PF00364 Biotin-requiring enzyme AM338_01015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM338_01015 PF02817 e3 binding domain AM338_01020 PF08442 ATP-grasp domain AM338_01020 PF00549 CoA-ligase AM338_01025 PF02629 CoA binding domain AM338_01025 PF00549 CoA-ligase AM338_01035 PF00392 Bacterial regulatory proteins, gntR family AM338_01035 PF07702 UTRA domain AM338_01040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_01040 PF02378 Phosphotransferase system, EIIC AM338_01040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_01045 PF07748 Glycosyl hydrolases family 38 C-terminal domain AM338_01045 PF09261 Alpha mannosidase middle domain AM338_01045 PF01074 Glycosyl hydrolases family 38 N-terminal domain AM338_01055 PF01654 Cytochrome bd terminal oxidase subunit I AM338_01060 PF02322 Cytochrome bd terminal oxidase subunit II AM338_01065 PF08173 Membrane bound YbgT-like protein AM338_01070 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AM338_01075 PF03061 Thioesterase superfamily AM338_01080 PF01618 MotA/TolQ/ExbB proton channel family AM338_01085 PF02472 Biopolymer transport protein ExbD/TolR AM338_01090 PF06519 TolA C-terminal AM338_01095 PF07676 WD40-like Beta Propeller Repeat AM338_01095 PF04052 TolB amino-terminal domain AM338_01100 PF00691 OmpA family AM338_01105 PF16331 TolA binding protein trimerisation AM338_01105 PF13174 Tetratricopeptide repeat AM338_01150 PF02445 Quinolinate synthetase A protein AM338_01155 PF04973 Nicotinamide mononucleotide transporter AM338_01160 PF01545 Cation efflux family AM338_01165 PF13985 YbgS-like protein AM338_01175 PF00793 DAHP synthetase I family AM338_01180 PF00300 Histidine phosphatase superfamily (branch 1) AM338_01185 PF01263 Aldose 1-epimerase AM338_01190 PF10509 Galactokinase galactose-binding signature AM338_01190 PF00288 GHMP kinases N terminal domain AM338_01190 PF08544 GHMP kinases C terminal AM338_01195 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AM338_01195 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AM338_01200 PF16363 GDP-mannose 4,6 dehydratase AM338_01205 PF00005 ABC transporter AM338_01210 PF03459 TOBE domain AM338_01210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_01215 PF10766 Multidrug efflux pump-associated protein AcrZ AM338_01230 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01235 PF00005 ABC transporter AM338_01235 PF03459 TOBE domain AM338_01245 PF10282 Lactonase, 7-bladed beta-propeller AM338_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_01250 PF03466 LysR substrate binding domain AM338_01255 PF04303 PrpF protein AM338_01260 PF00939 Sodium:sulfate symporter transmembrane region AM338_01265 PF00330 Aconitase family (aconitate hydratase) AM338_01265 PF00694 Aconitase C-terminal domain AM338_01270 PF01095 Pectinesterase AM338_01280 PF01161 Phosphatidylethanolamine-binding protein AM338_01285 PF00202 Aminotransferase class-III AM338_01290 PF06968 Biotin and Thiamin Synthesis associated domain AM338_01290 PF04055 Radical SAM superfamily AM338_01295 PF00155 Aminotransferase class I and II AM338_01300 PF08241 Methyltransferase domain AM338_01310 PF00271 Helicase conserved C-terminal domain AM338_01310 PF17757 UvrB interaction domain AM338_01310 PF12344 Ultra-violet resistance protein B AM338_01310 PF02151 UvrB/uvrC motif AM338_01310 PF04851 Type III restriction enzyme, res subunit AM338_01315 PF01933 Uncharacterised protein family UPF0052 AM338_01320 PF06463 Molybdenum Cofactor Synthesis C AM338_01320 PF04055 Radical SAM superfamily AM338_01325 PF00994 Probable molybdopterin binding domain AM338_01330 PF01967 MoaC family AM338_01335 PF02597 ThiS family AM338_01340 PF02391 MoaE protein AM338_01345 PF01027 Inhibitor of apoptosis-promoting Bax1 AM338_01350 PF01027 Inhibitor of apoptosis-promoting Bax1 AM338_01355 PF03706 Lysylphosphatidylglycerol synthase TM region AM338_01360 PF13091 PLD-like domain AM338_01365 PF03372 Endonuclease/Exonuclease/phosphatase family AM338_01370 PF11076 Putative inner membrane protein YbhQ AM338_01385 PF00005 ABC transporter AM338_01390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_01395 PF00440 Bacterial regulatory proteins, tetR family AM338_01395 PF09209 Tetracyclin repressor-like, C-terminal domain AM338_01400 PF00271 Helicase conserved C-terminal domain AM338_01400 PF00270 DEAD/DEAH box helicase AM338_01405 PF08719 Domain of unknown function (DUF1768) AM338_01415 PF00270 DEAD/DEAH box helicase AM338_01415 PF13307 Helicase C-terminal domain AM338_01415 PF06733 DEAD_2 AM338_01420 PF02885 Glycosyl transferase family, helical bundle domain AM338_01425 PF02615 Malate/L-lactate dehydrogenase AM338_01430 PF07338 Protein of unknown function (DUF1471) AM338_01435 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM338_01440 PF13640 2OG-Fe(II) oxygenase superfamily AM338_01440 PF18331 PKHD-type hydroxylase C-terminal domain AM338_01445 PF00593 TonB dependent receptor AM338_01445 PF07715 TonB-dependent Receptor Plug Domain AM338_01450 PF07338 Protein of unknown function (DUF1471) AM338_01455 PF05971 RNA methyltransferase AM338_01460 PF00924 Mechanosensitive ion channel AM338_01465 PF00005 ABC transporter AM338_01470 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01475 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_01490 PF00210 Ferritin-like domain AM338_01500 PF00892 EamA-like transporter family AM338_01505 PF13505 Outer membrane protein beta-barrel domain AM338_01510 PF00884 Sulfatase AM338_01520 PF02742 Iron dependent repressor, metal binding and dimerisation domain AM338_01520 PF01325 Iron dependent repressor, N-terminal DNA binding domain AM338_01525 PF03600 Citrate transporter AM338_01530 PF17969 L,D-transpeptidase C-terminal domain AM338_01530 PF03734 L,D-transpeptidase catalytic domain AM338_01535 PF12848 ABC transporter AM338_01535 PF00005 ABC transporter AM338_01540 PF07350 Protein of unknown function (DUF1479) AM338_01555 PF04055 Radical SAM superfamily AM338_01560 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM338_01565 PF00899 ThiF family AM338_01570 PF00994 Probable molybdopterin binding domain AM338_01570 PF03454 MoeA C-terminal region (domain IV) AM338_01570 PF03453 MoeA N-terminal region (domain I and II) AM338_01575 PF01112 Asparaginase AM338_01580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_01580 PF00005 ABC transporter AM338_01585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_01590 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01595 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01595 PF12911 N-terminal TM domain of oligopeptide transport permease C AM338_01600 PF17153 Periplasmic sensor domain, extracellular AM338_01600 PF00563 EAL domain AM338_01605 PF17156 Gammaproteobacterial periplasmic sensor domain AM338_01605 PF00990 Diguanylate cyclase, GGDEF domain AM338_01610 PF04055 Radical SAM superfamily AM338_01610 PF18693 TRAM domain AM338_01610 PF00919 Uncharacterized protein family UPF0004 AM338_01615 PF10799 Biofilm formation protein (YliH/bssR) AM338_01620 PF07995 Glucose / Sorbosone dehydrogenase AM338_01625 PF13417 Glutathione S-transferase, N-terminal domain AM338_01625 PF00043 Glutathione S-transferase, C-terminal domain AM338_01630 PF07943 Penicillin-binding protein 5, C-terminal domain AM338_01630 PF00768 D-alanyl-D-alanine carboxypeptidase AM338_01635 PF00455 DeoR C terminal sensor domain AM338_01635 PF08220 DeoR-like helix-turn-helix domain AM338_01640 PF01569 PAP2 superfamily AM338_01645 PF07690 Major Facilitator Superfamily AM338_01660 PF07690 Major Facilitator Superfamily AM338_01665 PF00440 Bacterial regulatory proteins, tetR family AM338_01670 PF06826 Predicted Permease Membrane Region AM338_01670 PF02080 TrkA-C domain AM338_01675 PF11045 Putative inner membrane protein of Enterobacteriaceae AM338_01680 PF00462 Glutaredoxin AM338_01685 PF07214 Protein of unknown function (DUF1418) AM338_01690 PF00881 Nitroreductase family AM338_01695 PF08443 RimK-like ATP-grasp domain AM338_01695 PF18030 RimK PreATP-grasp domain AM338_01700 PF10722 Putative bacterial sensory transduction regulator AM338_01710 PF13416 Bacterial extracellular solute-binding protein AM338_01715 PF00005 ABC transporter AM338_01715 PF08402 TOBE domain AM338_01720 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01725 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01730 PF10767 Protein of unknown function (DUF2593) AM338_01735 PF05958 tRNA (Uracil-5-)-methyltransferase AM338_01740 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_01745 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01750 PF00528 Binding-protein-dependent transport system inner membrane component AM338_01755 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_01760 PF00005 ABC transporter AM338_01765 PF12883 Protein of unknown function (DUF3828) AM338_01770 PF01906 Putative heavy-metal-binding AM338_01775 PF01510 N-acetylmuramoyl-L-alanine amidase AM338_01780 PF01370 NAD dependent epimerase/dehydratase family AM338_01785 PF13460 NAD(P)H-binding AM338_01785 PF11066 Protein of unknown function (DUF2867) AM338_01790 PF01212 Beta-eliminating lyase AM338_01795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_01795 PF00205 Thiamine pyrophosphate enzyme, central domain AM338_01795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_01800 PF00175 Oxidoreductase NAD-binding domain AM338_01800 PF00970 Oxidoreductase FAD-binding domain AM338_01800 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_01805 PF03063 Prismane/CO dehydrogenase family AM338_01810 PF03956 Lysine exporter LysO AM338_01820 PF00230 Major intrinsic protein AM338_01825 PF11398 Protein of unknown function (DUF2813) AM338_01830 PF04393 Protein of unknown function (DUF535) AM338_01835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_01840 PF12704 MacB-like periplasmic core domain AM338_01840 PF02687 FtsX-like permease family AM338_01840 PF00005 ABC transporter AM338_01845 PF00313 'Cold-shock' DNA-binding domain AM338_01900 PF00574 Clp protease AM338_01925 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM338_01930 PF17871 AAA lid domain AM338_01930 PF02861 Clp amino terminal domain, pathogenicity island component AM338_01930 PF07724 AAA domain (Cdc48 subfamily) AM338_01930 PF00004 ATPase family associated with various cellular activities (AAA) AM338_01930 PF10431 C-terminal, D2-small domain, of ClpB protein AM338_01940 PF01176 Translation initiation factor 1A / IF-1 AM338_01950 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM338_01955 PF00664 ABC transporter transmembrane region AM338_01955 PF00005 ABC transporter AM338_01960 PF00664 ABC transporter transmembrane region AM338_01960 PF00005 ABC transporter AM338_01965 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_01975 PF01037 Lrp/AsnC ligand binding domain AM338_01980 PF09397 Ftsk gamma domain AM338_01980 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AM338_01980 PF17854 FtsK alpha domain AM338_01980 PF01580 FtsK/SpoIIIE family AM338_01985 PF03548 Outer membrane lipoprotein carrier protein LolA AM338_01990 PF12002 MgsA AAA+ ATPase C terminal AM338_01990 PF00004 ATPase family associated with various cellular activities (AAA) AM338_01990 PF16193 AAA C-terminal domain AM338_01995 PF02403 Seryl-tRNA synthetase N-terminal domain AM338_01995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM338_02000 PF01568 Molydopterin dinucleotide binding domain AM338_02000 PF00384 Molybdopterin oxidoreductase AM338_02000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_02005 PF12800 4Fe-4S binding domain AM338_02005 PF13247 4Fe-4S dicluster domain AM338_02010 PF04976 DMSO reductase anchor subunit (DmsC) AM338_02015 PF00857 Isochorismatase family AM338_02020 PF07690 Major Facilitator Superfamily AM338_02025 PF13520 Amino acid permease AM338_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_02030 PF03466 LysR substrate binding domain AM338_02035 PF02525 Flavodoxin-like fold AM338_02040 PF04055 Radical SAM superfamily AM338_02045 PF02901 Pyruvate formate lyase-like AM338_02045 PF01228 Glycine radical AM338_02050 PF01226 Formate/nitrite transporter AM338_02055 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AM338_02055 PF18381 YcaO cyclodehydratase C-terminal domain AM338_02060 PF04239 Protein of unknown function (DUF421) AM338_02065 PF00266 Aminotransferase class-V AM338_02070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM338_02075 PF01435 Peptidase family M48 AM338_02080 PF02224 Cytidylate kinase AM338_02085 PF00575 S1 RNA binding domain AM338_02090 PF00216 Bacterial DNA-binding protein AM338_02095 PF03772 Competence protein AM338_02095 PF00753 Metallo-beta-lactamase superfamily AM338_02100 PF00005 ABC transporter AM338_02100 PF00664 ABC transporter transmembrane region AM338_02105 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AM338_02110 PF06224 Winged helix DNA-binding domain AM338_02115 PF03966 Trm112p-like protein AM338_02120 PF02348 Cytidylyltransferase AM338_02125 PF01636 Phosphotransferase enzyme family AM338_02130 PF02698 DUF218 domain AM338_02140 PF13847 Methyltransferase domain AM338_02145 PF03882 MukF winged-helix domain AM338_02145 PF17193 MukF C-terminal domain AM338_02145 PF17192 MukF middle domain AM338_02150 PF04288 MukE-like family AM338_02155 PF04310 MukB N-terminal AM338_02155 PF16330 MukB hinge domain AM338_02160 PF03734 L,D-transpeptidase catalytic domain AM338_02160 PF01471 Putative peptidoglycan binding domain AM338_02170 PF05951 Bacterial protein of unknown function (DUF882) AM338_02175 PF00753 Metallo-beta-lactamase superfamily AM338_02185 PF00155 Aminotransferase class I and II AM338_02200 PF13610 DDE domain AM338_02225 PF01336 OB-fold nucleic acid binding domain AM338_02225 PF00152 tRNA synthetases class II (D, K and N) AM338_02230 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AM338_02230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM338_02235 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AM338_02235 PF01433 Peptidase family M1 domain AM338_02235 PF11940 Domain of unknown function (DUF3458) Ig-like fold AM338_02240 PF00005 ABC transporter AM338_02245 PF00528 Binding-protein-dependent transport system inner membrane component AM338_02250 PF00296 Luciferase-like monooxygenase AM338_02255 PF09084 NMT1/THI5 like AM338_02260 PF03358 NADPH-dependent FMN reductase AM338_02270 PF00419 Fimbrial protein AM338_02275 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_02275 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_02280 PF00577 Outer membrane usher protein AM338_02280 PF13954 PapC N-terminal domain AM338_02280 PF13953 PapC C-terminal domain AM338_02285 PF00419 Fimbrial protein AM338_02290 PF00419 Fimbrial protein AM338_02295 PF00419 Fimbrial protein AM338_02300 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_02300 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_02305 PF01180 Dihydroorotate dehydrogenase AM338_02310 PF07126 Cell-division protein ZapC AM338_02315 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_02315 PF03473 MOSC domain AM338_02315 PF03476 MOSC N-terminal beta barrel domain AM338_02320 PF01170 Putative RNA methylase family UPF0020 AM338_02320 PF02926 THUMP domain AM338_02320 PF10672 S-adenosylmethionine-dependent methyltransferase AM338_02325 PF12848 ABC transporter AM338_02325 PF16326 ABC transporter C-terminal domain AM338_02325 PF00005 ABC transporter AM338_02330 PF04403 Paraquat-inducible protein A AM338_02335 PF02470 MlaD protein AM338_02340 PF03886 ABC-type transport auxiliary lipoprotein component AM338_02345 PF04957 Ribosome modulation factor AM338_02350 PF07977 FabA-like domain AM338_02355 PF13654 AAA domain AM338_02355 PF05362 Lon protease (S16) C-terminal proteolytic domain AM338_02360 PF06303 MatP N-terminal domain AM338_02360 PF17414 MatP C-terminal ribbon-helix-helix domain AM338_02365 PF01389 OmpA-like transmembrane domain AM338_02365 PF00691 OmpA family AM338_02375 PF03846 Cell division inhibitor SulA AM338_02380 PF04994 TfoX C-terminal domain AM338_02380 PF04993 TfoX N-terminal domain AM338_02385 PF12805 FUSC-like inner membrane protein yccS AM338_02390 PF03733 Inner membrane component domain AM338_02395 PF12462 DNA helicase IV / RNA helicase N terminal AM338_02395 PF13361 UvrD-like helicase C-terminal domain AM338_02395 PF00580 UvrD/REP helicase N-terminal domain AM338_02400 PF02142 MGS-like domain AM338_02405 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AM338_02410 PF13380 CoA binding domain AM338_02415 PF08755 Hemimethylated DNA-binding protein YccV like AM338_02420 PF10672 S-adenosylmethionine-dependent methyltransferase AM338_02420 PF17785 PUA-like domain AM338_02425 PF00708 Acylphosphatase AM338_02430 PF04358 DsrC like protein AM338_02435 PF01027 Inhibitor of apoptosis-promoting Bax1 AM338_02445 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AM338_02445 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM338_02450 PF00374 Nickel-dependent hydrogenase AM338_02455 PF01292 Prokaryotic cytochrome b561 AM338_02460 PF01750 Hydrogenase maturation protease AM338_02465 PF07449 Hydrogenase-1 expression protein HyaE AM338_02470 PF04809 HupH hydrogenase expression protein, C-terminal conserved region AM338_02475 PF01654 Cytochrome bd terminal oxidase subunit I AM338_02480 PF02322 Cytochrome bd terminal oxidase subunit II AM338_02485 PF08173 Membrane bound YbgT-like protein AM338_02490 PF00328 Histidine phosphatase superfamily (branch 2) AM338_02495 PF13614 AAA domain AM338_02495 PF13807 G-rich domain on putative tyrosine kinase AM338_02495 PF02706 Chain length determinant protein AM338_02500 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM338_02505 PF02563 Polysaccharide biosynthesis/export protein AM338_02505 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AM338_02505 PF10531 SLBB domain AM338_02510 PF06082 Exopolysaccharide biosynthesis protein YbjH AM338_02515 PF06251 Capsule biosynthesis GfcC AM338_02520 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AM338_02530 PF00313 'Cold-shock' DNA-binding domain AM338_02535 PF00313 'Cold-shock' DNA-binding domain AM338_02545 PF15939 Putative antitoxin of bacterial toxin-antitoxin system AM338_02550 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system AM338_02555 PF12801 4Fe-4S binding domain AM338_02560 PF00672 HAMP domain AM338_02560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_02560 PF00512 His Kinase A (phospho-acceptor) domain AM338_02560 PF01627 Hpt domain AM338_02560 PF00072 Response regulator receiver domain AM338_02565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_02570 PF00072 Response regulator receiver domain AM338_02570 PF00486 Transcriptional regulatory protein, C terminal AM338_02575 PF03264 NapC/NirT cytochrome c family, N-terminal region AM338_02580 PF18364 Molybdopterin oxidoreductase N-terminal domain AM338_02580 PF01568 Molydopterin dinucleotide binding domain AM338_02580 PF00384 Molybdopterin oxidoreductase AM338_02585 PF02613 Nitrate reductase delta subunit AM338_02595 PF00226 DnaJ domain AM338_02595 PF01556 DnaJ C terminal domain AM338_02605 PF00328 Histidine phosphatase superfamily (branch 2) AM338_02610 PF13993 YccJ-like protein AM338_02615 PF03358 NADPH-dependent FMN reductase AM338_02625 PF10685 Stress-induced bacterial acidophilic repeat motif AM338_02630 PF00860 Permease family AM338_02635 PF01613 Flavin reductase like domain AM338_02640 PF00881 Nitroreductase family AM338_02645 PF12697 Alpha/beta hydrolase family AM338_02650 PF01042 Endoribonuclease L-PSP AM338_02655 PF00857 Isochorismatase family AM338_02660 PF00296 Luciferase-like monooxygenase AM338_02665 PF00440 Bacterial regulatory proteins, tetR family AM338_02665 PF08362 YcdC-like protein, C-terminal region AM338_02670 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM338_02670 PF14850 DNA-binding domain of Proline dehydrogenase AM338_02670 PF00171 Aldehyde dehydrogenase family AM338_02670 PF01619 Proline dehydrogenase AM338_02685 PF00474 Sodium:solute symporter family AM338_02700 PF03239 Iron permease FTR1 family AM338_02705 PF13473 Cupredoxin-like domain AM338_02705 PF09375 Imelysin AM338_02710 PF04261 Dyp-type peroxidase family AM338_02720 PF02562 PhoH-like protein AM338_02725 PF13994 PgaD-like protein AM338_02730 PF00535 Glycosyl transferase family 2 AM338_02735 PF01522 Polysaccharide deacetylase AM338_02735 PF14883 Hypothetical glycosyl hydrolase family 13 AM338_02745 PF00990 Diguanylate cyclase, GGDEF domain AM338_02745 PF17158 Membrane-associated sensor, integral membrane domain AM338_02775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM338_02780 PF02811 PHP domain AM338_02785 PF02613 Nitrate reductase delta subunit AM338_02790 PF06496 Protein of unknown function (DUF1097) AM338_02795 PF03783 Curli production assembly/transport component CsgG AM338_02800 PF10614 Type VIII secretion system (T8SS), CsgF protein AM338_02805 PF10627 Curli assembly protein CsgE AM338_02810 PF00196 Bacterial regulatory proteins, luxR family AM338_02825 PF07012 Curlin associated repeat AM338_02830 PF07012 Curlin associated repeat AM338_02835 PF10610 Thin aggregative fimbriae synthesis protein AM338_02845 PF01661 Macro domain AM338_02850 PF13091 PLD-like domain AM338_02855 PF01757 Acyltransferase family AM338_02870 PF04349 Periplasmic glucan biosynthesis protein, MdoG AM338_02875 PF00535 Glycosyl transferase family 2 AM338_02880 PF07119 Protein of unknown function (DUF1375) AM338_02885 PF13984 MsyB protein AM338_02890 PF07690 Major Facilitator Superfamily AM338_02895 PF03279 Bacterial lipid A biosynthesis acyltransferase AM338_02905 PF04264 YceI-like domain AM338_02910 PF01292 Prokaryotic cytochrome b561 AM338_02915 PF10968 Protein of unknown function (DUF2770) AM338_02920 PF01266 FAD dependent oxidoreductase AM338_02925 PF13991 BssS protein family AM338_02930 PF06183 DinI-like family AM338_02935 PF01979 Amidohydrolase family AM338_02940 PF07273 Protein of unknown function (DUF1439) AM338_02945 PF04399 Glutaredoxin 2, C terminal domain AM338_02945 PF13417 Glutathione S-transferase, N-terminal domain AM338_02950 PF07690 Major Facilitator Superfamily AM338_02955 PF13302 Acetyltransferase (GNAT) domain AM338_02960 PF04337 Protein of unknown function, DUF480 AM338_02965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM338_02970 PF03023 Lipid II flippase MurJ AM338_02975 PF05130 FlgN protein AM338_02980 PF04316 Anti-sigma-28 factor, FlgM AM338_02985 PF13144 Chaperone for flagella basal body P-ring formation AM338_02990 PF00460 Flagella basal body rod protein AM338_02995 PF00460 Flagella basal body rod protein AM338_02995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM338_03000 PF13861 FlgD Tudor-like domain AM338_03000 PF03963 Flagellar hook capping protein - N-terminal region AM338_03000 PF13860 FlgD Ig-like domain AM338_03005 PF07559 Flagellar basal body protein FlaE AM338_03005 PF00460 Flagella basal body rod protein AM338_03005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM338_03010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM338_03010 PF00460 Flagella basal body rod protein AM338_03015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM338_03015 PF00460 Flagella basal body rod protein AM338_03020 PF02107 Flagellar L-ring protein AM338_03025 PF02119 Flagellar P-ring protein AM338_03030 PF10135 Rod binding protein AM338_03030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AM338_03035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM338_03035 PF00460 Flagella basal body rod protein AM338_03040 PF00669 Bacterial flagellin N-terminal helical region AM338_03045 PF12111 Polyribonucleotide phosphorylase C terminal AM338_03045 PF10150 Ribonuclease E/G family AM338_03045 PF00575 S1 RNA binding domain AM338_03060 PF01479 S4 domain AM338_03060 PF00849 RNA pseudouridylate synthase AM338_03065 PF02545 Maf-like protein AM338_03070 PF02620 Large ribosomal RNA subunit accumulation protein YceD AM338_03075 PF01783 Ribosomal L32p protein family AM338_03080 PF02504 Fatty acid synthesis protein AM338_03085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM338_03085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM338_03090 PF00698 Acyl transferase domain AM338_03100 PF00550 Phosphopantetheine attachment site AM338_03105 PF02801 Beta-ketoacyl synthase, C-terminal domain AM338_03105 PF00109 Beta-ketoacyl synthase, N-terminal domain AM338_03110 PF01063 Amino-transferase class IV AM338_03115 PF02618 YceG-like family AM338_03120 PF02223 Thymidylate kinase AM338_03125 PF09115 DNA polymerase III, delta subunit, C terminal AM338_03130 PF01026 TatD related DNase AM338_03135 PF02378 Phosphotransferase system, EIIC AM338_03135 PF00367 phosphotransferase system, EIIB AM338_03140 PF00593 TonB dependent receptor AM338_03140 PF07715 TonB-dependent Receptor Plug Domain AM338_03145 PF01230 HIT domain AM338_03150 PF07233 Protein of unknown function (DUF1425) AM338_03155 PF13036 Peptidoglycan-synthase activator LpoB AM338_03160 PF01636 Phosphotransferase enzyme family AM338_03165 PF00933 Glycosyl hydrolase family 3 N terminal domain AM338_03170 PF05728 Uncharacterised protein family (UPF0227) AM338_03175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_03185 PF05433 Glycine zipper 2TM domain AM338_03190 PF00440 Bacterial regulatory proteins, tetR family AM338_03195 PF07338 Protein of unknown function (DUF1471) AM338_03200 PF03734 L,D-transpeptidase catalytic domain AM338_03200 PF01476 LysM domain AM338_03200 PF17969 L,D-transpeptidase C-terminal domain AM338_03205 PF00271 Helicase conserved C-terminal domain AM338_03205 PF02559 CarD-like/TRCF domain AM338_03205 PF00270 DEAD/DEAH box helicase AM338_03205 PF03461 TRCF domain AM338_03205 PF17757 UvrB interaction domain AM338_03210 PF01757 Acyltransferase family AM338_03215 PF02687 FtsX-like permease family AM338_03215 PF12704 MacB-like periplasmic core domain AM338_03220 PF00005 ABC transporter AM338_03225 PF12704 MacB-like periplasmic core domain AM338_03225 PF02687 FtsX-like permease family AM338_03230 PF00480 ROK family AM338_03235 PF02146 Sir2 family AM338_03240 PF04536 TPM domain AM338_03245 PF12158 Protein of unknown function (DUF3592) AM338_03250 PF13416 Bacterial extracellular solute-binding protein AM338_03255 PF00528 Binding-protein-dependent transport system inner membrane component AM338_03260 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain AM338_03260 PF00589 Phage integrase family AM338_03270 PF12684 PDDEXK-like domain of unknown function (DUF3799) AM338_03270 PF06630 Enterobacterial exodeoxyribonuclease VIII AM338_03275 PF07358 Protein of unknown function (DUF1482) AM338_03280 PF05358 DicB protein AM338_03320 PF17948 DnaT DNA-binding domain AM338_03350 PF01848 Hok/gef family AM338_03360 PF06147 Protein of unknown function (DUF968) AM338_03365 PF05866 Endodeoxyribonuclease RusA AM338_03370 PF03589 Antitermination protein AM338_03405 PF04971 Bacteriophage P21 holin S AM338_03410 PF07041 Protein of unknown function (DUF1327) AM338_03415 PF00959 Phage lysozyme AM338_03425 PF06085 Lipoprotein Rz1 precursor AM338_03430 PF06291 Bor protein AM338_03535 PF06316 Enterobacterial Ail/Lom protein AM338_03555 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_03585 PF08242 Methyltransferase domain AM338_03595 PF00528 Binding-protein-dependent transport system inner membrane component AM338_03600 PF00005 ABC transporter AM338_03600 PF08402 TOBE domain AM338_03610 PF07687 Peptidase dimerisation domain AM338_03610 PF01546 Peptidase family M20/M25/M40 AM338_03615 PF08007 Cupin superfamily protein AM338_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_03620 PF08918 PhoQ Sensor AM338_03625 PF00486 Transcriptional regulatory protein, C terminal AM338_03625 PF00072 Response regulator receiver domain AM338_03630 PF00206 Lyase AM338_03630 PF08328 Adenylosuccinate lyase C-terminal AM338_03635 PF04356 Protein of unknown function (DUF489) AM338_03645 PF00293 NUDIX domain AM338_03650 PF00849 RNA pseudouridylate synthase AM338_03655 PF00180 Isocitrate/isopropylmalate dehydrogenase AM338_03665 PF07166 Protein of unknown function (DUF1398) AM338_03670 PF13411 MerR HTH family regulatory protein AM338_03675 PF04940 Sensors of blue-light using FAD AM338_03675 PF00563 EAL domain AM338_03680 PF10798 Biofilm development protein YmgB/AriR AM338_03690 PF10798 Biofilm development protein YmgB/AriR AM338_03700 PF12792 CSS motif domain associated with EAL AM338_03700 PF00563 EAL domain AM338_03715 PF03797 Autotransporter beta-domain AM338_03725 PF13436 Glycine-zipper domain AM338_03750 PF03776 Septum formation topological specificity factor MinE AM338_03755 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM338_03760 PF05209 Septum formation inhibitor MinC, N-terminal domain AM338_03760 PF03775 Septum formation inhibitor MinC, C-terminal domain AM338_03770 PF05666 Fels-1 Prophage Protein-like AM338_03775 PF04151 Bacterial pre-peptidase C-terminal domain AM338_03785 PF05166 YcgL domain AM338_03790 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM338_03795 PF03692 Putative zinc- or iron-chelating domain AM338_03800 PF06109 Haemolysin E (HlyE) AM338_03805 PF00717 Peptidase S24-like AM338_03810 PF11799 impB/mucB/samB family C-terminal domain AM338_03810 PF00817 impB/mucB/samB family AM338_03810 PF13438 Domain of unknown function (DUF4113) AM338_03810 PF11798 IMS family HHH motif AM338_03815 PF02600 Disulfide bond formation protein DsbB AM338_03820 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AM338_03825 PF00392 Bacterial regulatory proteins, gntR family AM338_03825 PF07840 FadR C-terminal domain AM338_03830 PF04293 SpoVR like protein AM338_03835 PF01266 FAD dependent oxidoreductase AM338_03840 PF01168 Alanine racemase, N-terminal domain AM338_03840 PF00842 Alanine racemase, C-terminal domain AM338_03845 PF03471 Transporter associated domain AM338_03845 PF00999 Sodium/hydrogen exchanger family AM338_03845 PF02080 TrkA-C domain AM338_03850 PF17676 LD-carboxypeptidase C-terminal domain AM338_03850 PF02016 LD-carboxypeptidase N-terminal domain AM338_03860 PF01464 Transglycosylase SLT domain AM338_03865 PF07238 PilZ domain AM338_03865 PF07317 Flagellar regulator YcgR AM338_03870 PF04226 Transglycosylase associated protein AM338_03880 PF01204 Trehalase AM338_03890 PF00391 PEP-utilising enzyme, mobile domain AM338_03890 PF05524 PEP-utilising enzyme, N-terminal AM338_03890 PF00381 PTS HPr component phosphorylation site AM338_03890 PF03610 PTS system fructose IIA component AM338_03895 PF02734 DAK2 domain AM338_03900 PF02733 Dak1 domain AM338_03905 PF02954 Bacterial regulatory protein, Fis family AM338_03905 PF00158 Sigma-54 interaction domain AM338_03905 PF00989 PAS fold AM338_03910 PF03797 Autotransporter beta-domain AM338_03910 PF03212 Pertactin AM338_03925 PF01926 50S ribosome-binding GTPase AM338_03925 PF06071 Protein of unknown function (DUF933) AM338_03930 PF01195 Peptidyl-tRNA hydrolase AM338_03935 PF10762 Protein of unknown function (DUF2583) AM338_03940 PF00916 Sulfate permease family AM338_03940 PF01740 STAS domain AM338_03945 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM338_03945 PF14572 Phosphoribosyl synthetase-associated domain AM338_03950 PF08544 GHMP kinases C terminal AM338_03950 PF00288 GHMP kinases N terminal domain AM338_03955 PF03550 Outer membrane lipoprotein LolB AM338_03960 PF01488 Shikimate / quinate 5-dehydrogenase AM338_03960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM338_03960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM338_03965 PF00472 RF-1 domain AM338_03965 PF03462 PCRF domain AM338_03970 PF13847 Methyltransferase domain AM338_03970 PF17827 PrmC N-terminal domain AM338_03975 PF04247 Invasion gene expression up-regulator, SirB AM338_03980 PF13369 Transglutaminase-like superfamily AM338_03985 PF00793 DAHP synthetase I family AM338_03990 PF13940 Toxin Ldr, type I toxin-antitoxin system AM338_04000 PF13940 Toxin Ldr, type I toxin-antitoxin system AM338_04010 PF13940 Toxin Ldr, type I toxin-antitoxin system AM338_04015 PF01699 Sodium/calcium exchanger protein AM338_04020 PF06150 ChaB AM338_04025 PF04752 ChaC-like protein AM338_04030 PF02635 DsrE/DsrF-like family AM338_04035 PF11924 Inverse autotransporter, beta-domain AM338_04040 PF00196 Bacterial regulatory proteins, luxR family AM338_04040 PF00072 Response regulator receiver domain AM338_04045 PF00672 HAMP domain AM338_04045 PF07730 Histidine kinase AM338_04045 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM338_04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_04055 PF07690 Major Facilitator Superfamily AM338_04060 PF00384 Molybdopterin oxidoreductase AM338_04060 PF14710 Respiratory nitrate reductase alpha N-terminal AM338_04060 PF01568 Molydopterin dinucleotide binding domain AM338_04065 PF14711 Respiratory nitrate reductase beta C-terminal AM338_04065 PF13247 4Fe-4S dicluster domain AM338_04070 PF02613 Nitrate reductase delta subunit AM338_04075 PF02665 Nitrate reductase gamma subunit AM338_04110 PF00551 Formyl transferase AM338_04110 PF01842 ACT domain AM338_04115 PF02810 SEC-C motif AM338_04120 PF01734 Patatin-like phospholipase AM338_04125 PF00072 Response regulator receiver domain AM338_04130 PF00483 Nucleotidyl transferase AM338_04135 PF00816 H-NS histone family AM338_04140 PF00265 Thymidine kinase AM338_04150 PF00171 Aldehyde dehydrogenase family AM338_04150 PF00465 Iron-containing alcohol dehydrogenase AM338_04155 PF01914 MarC family integral membrane protein AM338_04165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_04170 PF00528 Binding-protein-dependent transport system inner membrane component AM338_04175 PF12911 N-terminal TM domain of oligopeptide transport permease C AM338_04175 PF00528 Binding-protein-dependent transport system inner membrane component AM338_04180 PF00005 ABC transporter AM338_04180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_04185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_04185 PF00005 ABC transporter AM338_04190 PF04269 Protein of unknown function, DUF440 AM338_04195 PF13091 PLD-like domain AM338_04195 PF13396 Phospholipase_D-nuclease N-terminal AM338_04205 PF02254 TrkA-N domain AM338_04205 PF07885 Ion channel AM338_04210 PF03795 YCII-related domain AM338_04215 PF03544 Gram-negative bacterial TonB protein C-terminal AM338_04220 PF03061 Thioesterase superfamily AM338_04225 PF04279 Intracellular septation protein A AM338_04240 PF03922 OmpW family AM338_04245 PF05974 Domain of unknown function (DUF892) AM338_04250 PF05974 Domain of unknown function (DUF892) AM338_04255 PF10685 Stress-induced bacterial acidophilic repeat motif AM338_04260 PF00290 Tryptophan synthase alpha chain AM338_04265 PF00291 Pyridoxal-phosphate dependent enzyme AM338_04270 PF00218 Indole-3-glycerol phosphate synthase AM338_04270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM338_04275 PF02885 Glycosyl transferase family, helical bundle domain AM338_04275 PF00591 Glycosyl transferase family, a/b domain AM338_04275 PF00117 Glutamine amidotransferase class-I AM338_04280 PF04715 Anthranilate synthase component I, N terminal region AM338_04280 PF00425 chorismate binding enzyme AM338_04285 PF08255 Trp-operon Leader Peptide AM338_04290 PF02811 PHP domain AM338_04295 PF01300 Telomere recombination AM338_04300 PF09972 Predicted membrane protein (DUF2207) AM338_04305 PF00849 RNA pseudouridylate synthase AM338_04305 PF01479 S4 domain AM338_04310 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AM338_04310 PF12557 Cob(I)alamin adenosyltransferase N terminal AM338_04315 PF00106 short chain dehydrogenase AM338_04320 PF01343 Peptidase family S49 AM338_04320 PF08496 Peptidase family S49 N-terminal AM338_04325 PF10692 Protein of unknown function (DUF2498) AM338_04335 PF01751 Toprim domain AM338_04335 PF01131 DNA topoisomerase AM338_04335 PF08272 Topoisomerase I zinc-ribbon-like AM338_04335 PF01396 Topoisomerase DNA binding C4 zinc finger AM338_04345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_04345 PF03466 LysR substrate binding domain AM338_04375 PF00330 Aconitase family (aconitate hydratase) AM338_04375 PF00694 Aconitase C-terminal domain AM338_04380 PF00925 GTP cyclohydrolase II AM338_04385 PF01569 PAP2 superfamily AM338_04390 PF06305 Lipopolysaccharide assembly protein A domain AM338_04395 PF18073 Rubredoxin metal binding domain AM338_04400 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM338_04405 PF01253 Translation initiation factor SUI1 AM338_04410 PF05433 Glycine zipper 2TM domain AM338_04415 PF08220 DeoR-like helix-turn-helix domain AM338_04415 PF00455 DeoR C terminal sensor domain AM338_04425 PF00563 EAL domain AM338_04425 PF13426 PAS domain AM338_04425 PF00990 Diguanylate cyclase, GGDEF domain AM338_04435 PF17876 Cold shock domain AM338_04435 PF00773 RNB domain AM338_04435 PF00575 S1 RNA binding domain AM338_04435 PF08206 Ribonuclease B OB domain AM338_04450 PF04480 Protein of unknown function (DUF559) AM338_04455 PF00005 ABC transporter AM338_04460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_04460 PF00005 ABC transporter AM338_04465 PF12911 N-terminal TM domain of oligopeptide transport permease C AM338_04465 PF00528 Binding-protein-dependent transport system inner membrane component AM338_04470 PF00528 Binding-protein-dependent transport system inner membrane component AM338_04475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_04485 PF10820 Protein of unknown function (DUF2543) AM338_04490 PF00324 Amino acid permease AM338_04495 PF00120 Glutamine synthetase, catalytic domain AM338_04500 PF07722 Peptidase C26 AM338_04505 PF01381 Helix-turn-helix AM338_04505 PF07883 Cupin domain AM338_04515 PF00171 Aldehyde dehydrogenase family AM338_04520 PF01266 FAD dependent oxidoreductase AM338_04525 PF00202 Aminotransferase class-III AM338_04530 PF00158 Sigma-54 interaction domain AM338_04530 PF02954 Bacterial regulatory protein, Fis family AM338_04535 PF04012 PspA/IM30 family AM338_04540 PF06667 Phage shock protein B AM338_04545 PF04024 PspC domain AM338_04550 PF09584 Phage shock protein PspD (Phageshock_PspD) AM338_04555 PF00581 Rhodanese-like domain AM338_04560 PF00128 Alpha amylase, catalytic domain AM338_04570 PF00528 Binding-protein-dependent transport system inner membrane component AM338_04575 PF00528 Binding-protein-dependent transport system inner membrane component AM338_04580 PF00107 Zinc-binding dehydrogenase AM338_04585 PF01261 Xylose isomerase-like TIM barrel AM338_04590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM338_04590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM338_04595 PF03632 Glycosyl hydrolase family 65 central catalytic domain AM338_04595 PF03633 Glycosyl hydrolase family 65, C-terminal domain AM338_04595 PF03636 Glycosyl hydrolase family 65, N-terminal domain AM338_04600 PF13419 Haloacid dehalogenase-like hydrolase AM338_04605 PF17912 MalK OB fold domain AM338_04605 PF03459 TOBE domain AM338_04605 PF00005 ABC transporter AM338_04610 PF09381 Outer membrane protein G (OmpG) AM338_04615 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_04615 PF00356 Bacterial regulatory proteins, lacI family AM338_04620 PF04317 YcjX-like family, DUF463 AM338_04625 PF05128 Domain of unknown function (DUF697) AM338_04630 PF18024 Helix-turn-helix domain AM338_04630 PF00158 Sigma-54 interaction domain AM338_04630 PF13188 PAS domain AM338_04635 PF08534 Redoxin AM338_04640 PF13378 Enolase C-terminal domain-like AM338_04640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM338_04645 PF00246 Zinc carboxypeptidase AM338_04655 PF12146 Serine aminopeptidase, S33 AM338_04660 PF03466 LysR substrate binding domain AM338_04660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_04665 PF13737 Transposase DDE domain AM338_04670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_04675 PF00924 Mechanosensitive ion channel AM338_04680 PF10749 Protein of unknown function (DUF2534) AM338_04685 PF00582 Universal stress protein family AM338_04690 PF00027 Cyclic nucleotide-binding domain AM338_04690 PF00325 Bacterial regulatory proteins, crp family AM338_04695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM338_04695 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM338_04700 PF03806 AbgT putative transporter family AM338_04710 PF01546 Peptidase family M20/M25/M40 AM338_04715 PF07687 Peptidase dimerisation domain AM338_04715 PF01546 Peptidase family M20/M25/M40 AM338_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_04720 PF03466 LysR substrate binding domain AM338_04730 PF01713 Smr domain AM338_04735 PF08448 PAS fold AM338_04735 PF00990 Diguanylate cyclase, GGDEF domain AM338_04740 PF01544 CorA-like Mg2+ transporter protein AM338_04750 PF00270 DEAD/DEAH box helicase AM338_04750 PF03880 DbpA RNA binding domain AM338_04750 PF00271 Helicase conserved C-terminal domain AM338_04755 PF01171 PP-loop family AM338_04760 PF00582 Universal stress protein family AM338_04765 PF00267 Gram-negative porin AM338_04775 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AM338_04775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AM338_04775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AM338_04775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_04775 PF10371 Domain of unknown function AM338_04780 PF03891 Domain of unknown function (DUF333) AM338_04785 PF03724 META domain AM338_04790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM338_04790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM338_04795 PF11739 Dicarboxylate transport AM338_04800 PF13617 YnbE-like lipoprotein AM338_04805 PF07027 Protein of unknown function (DUF1318) AM338_04810 PF12833 Helix-turn-helix domain AM338_04810 PF14525 AraC-binding-like domain AM338_04815 PF00171 Aldehyde dehydrogenase family AM338_04820 PF02727 Copper amine oxidase, N2 domain AM338_04820 PF01179 Copper amine oxidase, enzyme domain AM338_04820 PF02728 Copper amine oxidase, N3 domain AM338_04820 PF07833 Copper amine oxidase N-terminal domain AM338_04825 PF01575 MaoC like domain AM338_04825 PF00171 Aldehyde dehydrogenase family AM338_04830 PF05138 Phenylacetic acid catabolic protein AM338_04835 PF06243 Phenylacetic acid degradation B AM338_04840 PF05138 Phenylacetic acid catabolic protein AM338_04845 PF01883 Iron-sulfur cluster assembly protein AM338_04850 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_04850 PF00175 Oxidoreductase NAD-binding domain AM338_04850 PF00970 Oxidoreductase FAD-binding domain AM338_04855 PF00378 Enoyl-CoA hydratase/isomerase AM338_04860 PF00378 Enoyl-CoA hydratase/isomerase AM338_04865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM338_04865 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM338_04865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM338_04870 PF03061 Thioesterase superfamily AM338_04875 PF00108 Thiolase, N-terminal domain AM338_04875 PF02803 Thiolase, C-terminal domain AM338_04880 PF14535 AMP-binding enzyme C-terminal domain AM338_04880 PF00501 AMP-binding enzyme AM338_04885 PF07848 PaaX-like protein AM338_04885 PF08223 PaaX-like protein C-terminal domain AM338_04890 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_04920 PF00248 Aldo/keto reductase family AM338_04925 PF10971 Protein of unknown function (DUF2773) AM338_04930 PF01066 CDP-alcohol phosphatidyltransferase AM338_04940 PF12146 Serine aminopeptidase, S33 AM338_04940 PF12147 Putative methyltransferase AM338_04945 PF00782 Dual specificity phosphatase, catalytic domain AM338_04950 PF02525 Flavodoxin-like fold AM338_04955 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AM338_04955 PF00270 DEAD/DEAH box helicase AM338_04955 PF11898 Domain of unknown function (DUF3418) AM338_04955 PF04408 Helicase associated domain (HA2) AM338_04955 PF00271 Helicase conserved C-terminal domain AM338_04960 PF02698 DUF218 domain AM338_04965 PF00171 Aldehyde dehydrogenase family AM338_04980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM338_04980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM338_04985 PF01292 Prokaryotic cytochrome b561 AM338_04995 PF01848 Hok/gef family AM338_05000 PF02203 Tar ligand binding domain homologue AM338_05000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM338_05000 PF00672 HAMP domain AM338_05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_05005 PF03466 LysR substrate binding domain AM338_05010 PF07063 Domain of unknown function (DUF1338) AM338_05020 PF04349 Periplasmic glucan biosynthesis protein, MdoG AM338_05030 PF04325 Protein of unknown function (DUF465) AM338_05035 PF13302 Acetyltransferase (GNAT) domain AM338_05040 PF18836 Beta solenoid repeat from YDCK AM338_05045 PF03595 Voltage-dependent anion channel AM338_05050 PF03848 Tellurite resistance protein TehB AM338_05055 PF11769 Protein of unknown function (DUF3313) AM338_05065 PF12323 Helix-turn-helix domain AM338_05065 PF07282 Putative transposase DNA-binding domain AM338_05065 PF01385 Probable transposase AM338_05070 PF03594 Benzoate membrane transport protein AM338_05075 PF07883 Cupin domain AM338_05075 PF01381 Helix-turn-helix AM338_05080 PF01136 Peptidase family U32 AM338_05080 PF12392 Collagenase AM338_05085 PF10829 Protein of unknown function (DUF2554) AM338_05090 PF07927 HicA toxin of bacterial toxin-antitoxin, AM338_05095 PF01381 Helix-turn-helix AM338_05095 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AM338_05100 PF00155 Aminotransferase class I and II AM338_05100 PF00392 Bacterial regulatory proteins, gntR family AM338_05105 PF13416 Bacterial extracellular solute-binding protein AM338_05110 PF08402 TOBE domain AM338_05110 PF00005 ABC transporter AM338_05115 PF00528 Binding-protein-dependent transport system inner membrane component AM338_05120 PF00528 Binding-protein-dependent transport system inner membrane component AM338_05125 PF00171 Aldehyde dehydrogenase family AM338_05140 PF10753 Toxin GhoT_OrtT AM338_05145 PF10735 Protein of unknown function (DUF2526) AM338_05150 PF04657 Putative inner membrane exporter, YdcZ AM338_05155 PF00583 Acetyltransferase (GNAT) family AM338_05165 PF00107 Zinc-binding dehydrogenase AM338_05165 PF16884 N-terminal domain of oxidoreductase AM338_05170 PF07729 FCD domain AM338_05170 PF00392 Bacterial regulatory proteins, gntR family AM338_05175 PF00593 TonB dependent receptor AM338_05175 PF07715 TonB-dependent Receptor Plug Domain AM338_05195 PF00324 Amino acid permease AM338_05200 PF13417 Glutathione S-transferase, N-terminal domain AM338_05205 PF17520 Family of unknown function (DUF5445) AM338_05210 PF04717 Type VI secretion system, phage-baseplate injector AM338_05215 PF14220 Domain of unknown function (DUF4329) AM338_05215 PF05593 RHS Repeat AM338_05215 PF03527 RHS protein AM338_05230 PF01609 Transposase DDE domain AM338_05230 PF13808 DDE_Tnp_1-associated AM338_05235 PF01361 Tautomerase enzyme AM338_05240 PF01613 Flavin reductase like domain AM338_05245 PF00797 N-acetyltransferase AM338_05250 PF02567 Phenazine biosynthesis-like protein AM338_05255 PF02665 Nitrate reductase gamma subunit AM338_05260 PF02613 Nitrate reductase delta subunit AM338_05265 PF13247 4Fe-4S dicluster domain AM338_05265 PF14711 Respiratory nitrate reductase beta C-terminal AM338_05275 PF07690 Major Facilitator Superfamily AM338_05290 PF00267 Gram-negative porin AM338_05295 PF00892 EamA-like transporter family AM338_05300 PF01568 Molydopterin dinucleotide binding domain AM338_05300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_05300 PF00384 Molybdopterin oxidoreductase AM338_05305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_05305 PF00384 Molybdopterin oxidoreductase AM338_05305 PF01568 Molydopterin dinucleotide binding domain AM338_05310 PF12800 4Fe-4S binding domain AM338_05310 PF13247 4Fe-4S dicluster domain AM338_05310 PF09163 Formate dehydrogenase N, transmembrane AM338_05315 PF01292 Prokaryotic cytochrome b561 AM338_05320 PF01381 Helix-turn-helix AM338_05325 PF08240 Alcohol dehydrogenase GroES-like domain AM338_05325 PF00107 Zinc-binding dehydrogenase AM338_05330 PF03949 Malic enzyme, NAD binding domain AM338_05330 PF00390 Malic enzyme, N-terminal domain AM338_05335 PF08136 30S ribosomal protein subunit S22 family AM338_05340 PF10684 Putative biofilm-dependent modulation protein AM338_05350 PF02566 OsmC-like protein AM338_05355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_05355 PF00005 ABC transporter AM338_05360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_05360 PF00005 ABC transporter AM338_05365 PF00528 Binding-protein-dependent transport system inner membrane component AM338_05365 PF12911 N-terminal TM domain of oligopeptide transport permease C AM338_05370 PF00528 Binding-protein-dependent transport system inner membrane component AM338_05375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_05380 PF01427 D-ala-D-ala dipeptidase AM338_05385 PF13426 PAS domain AM338_05385 PF00563 EAL domain AM338_05385 PF00990 Diguanylate cyclase, GGDEF domain AM338_05390 PF00990 Diguanylate cyclase, GGDEF domain AM338_05400 PF13520 Amino acid permease AM338_05405 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM338_05410 PF00675 Insulinase (Peptidase family M16) AM338_05410 PF05193 Peptidase M16 inactive domain AM338_05415 PF07715 TonB-dependent Receptor Plug Domain AM338_05420 PF00005 ABC transporter AM338_05420 PF06472 ABC transporter transmembrane region 2 AM338_05425 PF13186 Iron-sulfur cluster-binding domain AM338_05425 PF04055 Radical SAM superfamily AM338_05430 PF00884 Sulfatase AM338_05435 PF12833 Helix-turn-helix domain AM338_05440 PF17073 Two-component-system connector protein AM338_05445 PF00384 Molybdopterin oxidoreductase AM338_05450 PF09160 FimH, mannose binding AM338_05455 PF00419 Fimbrial protein AM338_05460 PF00419 Fimbrial protein AM338_05465 PF13953 PapC C-terminal domain AM338_05465 PF00577 Outer membrane usher protein AM338_05475 PF07804 HipA-like C-terminal domain AM338_05475 PF13657 HipA N-terminal domain AM338_05480 PF01381 Helix-turn-helix AM338_05485 PF03797 Autotransporter beta-domain AM338_05495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_05495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_05500 PF04198 Putative sugar-binding domain AM338_05505 PF00005 ABC transporter AM338_05510 PF02653 Branched-chain amino acid transport system / permease component AM338_05515 PF02653 Branched-chain amino acid transport system / permease component AM338_05520 PF13407 Periplasmic binding protein domain AM338_05525 PF01791 DeoC/LacD family aldolase AM338_05530 PF03992 Antibiotic biosynthesis monooxygenase AM338_05535 PF13649 Methyltransferase domain AM338_05540 PF01062 Bestrophin, RFP-TM, chloride channel AM338_05550 PF08125 Mannitol dehydrogenase C-terminal domain AM338_05550 PF01232 Mannitol dehydrogenase Rossmann domain AM338_05560 PF00990 Diguanylate cyclase, GGDEF domain AM338_05565 PF13811 Domain of unknown function (DUF4186) AM338_05570 PF04960 Glutaminase AM338_05575 PF00171 Aldehyde dehydrogenase family AM338_05580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_05580 PF03466 LysR substrate binding domain AM338_05590 PF07690 Major Facilitator Superfamily AM338_05595 PF01914 MarC family integral membrane protein AM338_05600 PF01047 MarR family AM338_05605 PF12833 Helix-turn-helix domain AM338_05610 PF13999 MarB protein AM338_05615 PF00892 EamA-like transporter family AM338_05620 PF07690 Major Facilitator Superfamily AM338_05630 PF00990 Diguanylate cyclase, GGDEF domain AM338_05635 PF04076 Bacterial OB fold (BOF) protein AM338_05640 PF02464 Competence-damaged protein AM338_05645 PF01432 Peptidase family M3 AM338_05655 PF00106 short chain dehydrogenase AM338_05660 PF00392 Bacterial regulatory proteins, gntR family AM338_05660 PF07729 FCD domain AM338_05665 PF14001 YdfZ protein AM338_05670 PF08125 Mannitol dehydrogenase C-terminal domain AM338_05670 PF01232 Mannitol dehydrogenase Rossmann domain AM338_05675 PF00083 Sugar (and other) transporter AM338_05675 PF07690 Major Facilitator Superfamily AM338_05680 PF00107 Zinc-binding dehydrogenase AM338_05680 PF08240 Alcohol dehydrogenase GroES-like domain AM338_05685 PF13378 Enolase C-terminal domain-like AM338_05685 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM338_05695 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AM338_05700 PF06932 Protein of unknown function (DUF1283) AM338_05705 PF13302 Acetyltransferase (GNAT) domain AM338_05710 PF06788 Uncharacterised protein family (UPF0257) AM338_05715 PF06649 Protein of unknown function (DUF1161) AM338_05720 PF00384 Molybdopterin oxidoreductase AM338_05720 PF01568 Molydopterin dinucleotide binding domain AM338_05720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_05725 PF01568 Molydopterin dinucleotide binding domain AM338_05725 PF00384 Molybdopterin oxidoreductase AM338_05725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_05730 PF13247 4Fe-4S dicluster domain AM338_05730 PF12800 4Fe-4S binding domain AM338_05735 PF04976 DMSO reductase anchor subunit (DmsC) AM338_05740 PF02613 Nitrate reductase delta subunit AM338_05745 PF00654 Voltage gated chloride channel AM338_05755 PF00480 ROK family AM338_05760 PF03466 LysR substrate binding domain AM338_05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_05765 PF07690 Major Facilitator Superfamily AM338_05785 PF00089 Trypsin AM338_05790 PF00893 Small Multidrug Resistance protein AM338_05795 PF00893 Small Multidrug Resistance protein AM338_05805 PF01594 AI-2E family transporter AM338_05810 PF02233 NAD(P) transhydrogenase beta subunit AM338_05815 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AM338_05815 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM338_05815 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM338_05820 PF07338 Protein of unknown function (DUF1471) AM338_05830 PF13520 Amino acid permease AM338_05840 PF06942 GlpM protein AM338_05845 PF00072 Response regulator receiver domain AM338_05845 PF00486 Transcriptional regulatory protein, C terminal AM338_05850 PF00512 His Kinase A (phospho-acceptor) domain AM338_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_05850 PF00672 HAMP domain AM338_05855 PF05472 DNA replication terminus site-binding protein (Ter protein) AM338_05860 PF00206 Lyase AM338_05860 PF10415 Fumarase C C-terminus AM338_05865 PF05681 Fumarate hydratase (Fumerase) AM338_05865 PF05683 Fumarase C-terminus AM338_05870 PF01238 Phosphomannose isomerase type I AM338_05875 PF06097 Bacterial protein of unknown function (DUF945) AM338_05880 PF03573 outer membrane porin, OprD family AM338_05890 PF00703 Glycosyl hydrolases family 2 AM338_05890 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM338_05890 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM338_05895 PF00440 Bacterial regulatory proteins, tetR family AM338_05905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_05905 PF00356 Bacterial regulatory proteins, lacI family AM338_05910 PF00367 phosphotransferase system, EIIB AM338_05910 PF02378 Phosphotransferase system, EIIC AM338_05915 PF00155 Aminotransferase class I and II AM338_05920 PF00962 Adenosine/AMP deaminase AM338_05925 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM338_05925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM338_05940 PF05321 Haemolysin expression modulating protein AM338_05945 PF10754 Protein of unknown function (DUF2569) AM338_05950 PF02508 Rnf-Nqr subunit, membrane protein AM338_05955 PF04060 Putative Fe-S cluster AM338_05960 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM338_05960 PF12838 4Fe-4S dicluster domain AM338_05960 PF10531 SLBB domain AM338_05960 PF13375 RnfC Barrel sandwich hybrid domain AM338_05965 PF03116 NQR2, RnfD, RnfE family AM338_05970 PF04205 FMN-binding domain AM338_05975 PF02508 Rnf-Nqr subunit, membrane protein AM338_05980 PF10576 Iron-sulfur binding domain of endonuclease III AM338_05980 PF00633 Helix-hairpin-helix motif AM338_05980 PF00730 HhH-GPD superfamily base excision DNA repair protein AM338_05990 PF00854 POT family AM338_05995 PF02798 Glutathione S-transferase, N-terminal domain AM338_05995 PF00043 Glutathione S-transferase, C-terminal domain AM338_06000 PF08543 Phosphomethylpyrimidine kinase AM338_06005 PF00579 tRNA synthetases class I (W and Y) AM338_06005 PF01479 S4 domain AM338_06010 PF01243 Pyridoxamine 5'-phosphate oxidase AM338_06010 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM338_06015 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AM338_06020 PF03702 Anhydro-N-acetylmuramic acid kinase AM338_06025 PF05433 Glycine zipper 2TM domain AM338_06030 PF01047 MarR family AM338_06035 PF07869 Protein of unknown function (DUF1656) AM338_06040 PF00529 HlyD membrane-fusion protein of T1SS AM338_06040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_06045 PF04632 Fusaric acid resistance protein family AM338_06050 PF00080 Copper/zinc superoxide dismutase (SODC) AM338_06055 PF00248 Aldo/keto reductase family AM338_06060 PF06945 Protein of unknown function (DUF1289) AM338_06065 PF16925 Tetracyclin repressor-like, C-terminal domain AM338_06065 PF00440 Bacterial regulatory proteins, tetR family AM338_06070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM338_06075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM338_06080 PF00929 Exonuclease AM338_06085 PF00271 Helicase conserved C-terminal domain AM338_06085 PF08494 DEAD/H associated AM338_06085 PF00270 DEAD/DEAH box helicase AM338_06090 PF00462 Glutaredoxin AM338_06095 PF00877 NlpC/P60 family AM338_06100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM338_06100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM338_06105 PF07690 Major Facilitator Superfamily AM338_06120 PF00356 Bacterial regulatory proteins, lacI family AM338_06125 PF03466 LysR substrate binding domain AM338_06125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_06130 PF07690 Major Facilitator Superfamily AM338_06140 PF00677 Lumazine binding domain AM338_06145 PF01554 MatE AM338_06150 PF16168 Adhesin of bacterial autotransporter system, probable stalk AM338_06150 PF03212 Pertactin AM338_06165 PF08803 Putative mono-oxygenase ydhR AM338_06170 PF13454 FAD-NAD(P)-binding AM338_06180 PF01292 Prokaryotic cytochrome b561 AM338_06185 PF13247 4Fe-4S dicluster domain AM338_06195 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AM338_06195 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AM338_06200 PF12800 4Fe-4S binding domain AM338_06200 PF13247 4Fe-4S dicluster domain AM338_06205 PF10965 Protein of unknown function (DUF2767) AM338_06210 PF02887 Pyruvate kinase, alpha/beta domain AM338_06210 PF00224 Pyruvate kinase, barrel domain AM338_06215 PF04728 Lipoprotein leucine-zipper AM338_06220 PF17969 L,D-transpeptidase C-terminal domain AM338_06220 PF01476 LysM domain AM338_06220 PF03734 L,D-transpeptidase catalytic domain AM338_06225 PF02657 Fe-S metabolism associated domain AM338_06230 PF00266 Aminotransferase class-V AM338_06235 PF01458 Uncharacterized protein family (UPF0051) AM338_06240 PF00005 ABC transporter AM338_06245 PF01458 Uncharacterized protein family (UPF0051) AM338_06250 PF01521 Iron-sulphur cluster biosynthesis AM338_06255 PF15930 Domain of unknown function AM338_06260 PF03061 Thioesterase superfamily AM338_06265 PF13183 4Fe-4S dicluster domain AM338_06265 PF02913 FAD linked oxidases, C-terminal domain AM338_06265 PF01565 FAD binding domain AM338_06275 PF01594 AI-2E family transporter AM338_06285 PF08965 Domain of unknown function (DUF1870) AM338_06290 PF07690 Major Facilitator Superfamily AM338_06295 PF07690 Major Facilitator Superfamily AM338_06300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AM338_06300 PF08501 Shikimate dehydrogenase substrate binding domain AM338_06305 PF01487 Type I 3-dehydroquinase AM338_06310 PF01144 Coenzyme A transferase AM338_06315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM338_06315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM338_06315 PF02770 Acyl-CoA dehydrogenase, middle domain AM338_06320 PF12833 Helix-turn-helix domain AM338_06320 PF02311 AraC-like ligand binding domain AM338_06330 PF01012 Electron transfer flavoprotein domain AM338_06335 PF00766 Electron transfer flavoprotein FAD-binding domain AM338_06335 PF01012 Electron transfer flavoprotein domain AM338_06340 PF01494 FAD binding domain AM338_06350 PF00501 AMP-binding enzyme AM338_06350 PF13193 AMP-binding enzyme C-terminal domain AM338_06355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM338_06355 PF00391 PEP-utilising enzyme, mobile domain AM338_06355 PF02896 PEP-utilising enzyme, TIM barrel domain AM338_06365 PF03618 Kinase/pyrophosphorylase AM338_06370 PF00793 DAHP synthetase I family AM338_06375 PF10636 Hemin uptake protein hemP AM338_06380 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM338_06385 PF00563 EAL domain AM338_06390 PF00877 NlpC/P60 family AM338_06395 PF00005 ABC transporter AM338_06400 PF00255 Glutathione peroxidase AM338_06405 PF01032 FecCD transport family AM338_06410 PF00216 Bacterial DNA-binding protein AM338_06415 PF01588 Putative tRNA binding domain AM338_06415 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM338_06415 PF03484 tRNA synthetase B5 domain AM338_06415 PF03483 B3/4 domain AM338_06415 PF03147 Ferredoxin-fold anticodon binding domain AM338_06420 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM338_06420 PF01409 tRNA synthetases class II core domain (F) AM338_06425 PF00453 Ribosomal protein L20 AM338_06430 PF01632 Ribosomal protein L35 AM338_06435 PF05198 Translation initiation factor IF-3, N-terminal domain AM338_06435 PF00707 Translation initiation factor IF-3, C-terminal domain AM338_06440 PF03129 Anticodon binding domain AM338_06440 PF02824 TGS domain AM338_06440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM338_06440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM338_06450 PF07906 ShET2 enterotoxin, N-terminal region AM338_06460 PF04338 Protein of unknown function, DUF481 AM338_06465 PF00294 pfkB family carbohydrate kinase AM338_06470 PF11080 Endoribonuclease GhoS AM338_06480 PF14002 YniB-like protein AM338_06485 PF13419 Haloacid dehalogenase-like hydrolase AM338_06490 PF04307 LexA-binding, inner membrane-associated putative hydrolase AM338_06505 PF10729 Cell division activator CedA AM338_06510 PF06628 Catalase-related immune-responsive AM338_06510 PF00199 Catalase AM338_06510 PF18011 C-terminal domain found in long catalases AM338_06515 PF04794 YdjC-like protein AM338_06520 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM338_06520 PF02056 Family 4 glycosyl hydrolase AM338_06525 PF07883 Cupin domain AM338_06525 PF12833 Helix-turn-helix domain AM338_06530 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM338_06535 PF02378 Phosphotransferase system, EIIC AM338_06540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_06550 PF04355 SmpA / OmlA family AM338_06555 PF02540 NAD synthase AM338_06565 PF05962 HutD AM338_06570 PF07813 LTXXQ motif family protein AM338_06575 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM338_06580 PF04996 Succinylarginine dihydrolase AM338_06585 PF00171 Aldehyde dehydrogenase family AM338_06590 PF04958 Arginine N-succinyltransferase beta subunit AM338_06595 PF00202 Aminotransferase class-III AM338_06605 PF03372 Endonuclease/Exonuclease/phosphatase family AM338_06610 PF09335 SNARE associated Golgi protein AM338_06620 PF09335 SNARE associated Golgi protein AM338_06625 PF02627 Carboxymuconolactone decarboxylase family AM338_06630 PF13416 Bacterial extracellular solute-binding protein AM338_06635 PF00528 Binding-protein-dependent transport system inner membrane component AM338_06640 PF00005 ABC transporter AM338_06645 PF00581 Rhodanese-like domain AM338_06650 PF01066 CDP-alcohol phosphatidyltransferase AM338_06655 PF00293 NUDIX domain AM338_06660 PF07383 Protein of unknown function (DUF1496) AM338_06665 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM338_06665 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM338_06670 PF06889 Protein of unknown function (DUF1266) AM338_06675 PF01751 Toprim domain AM338_06675 PF01131 DNA topoisomerase AM338_06680 PF02769 AIR synthase related protein, C-terminal domain AM338_06680 PF00586 AIR synthase related protein, N-terminal domain AM338_06690 PF00881 Nitroreductase family AM338_06700 PF01343 Peptidase family S49 AM338_06705 PF17763 Glutaminase/Asparaginase C-terminal domain AM338_06705 PF00710 Asparaginase, N-terminal AM338_06710 PF00857 Isochorismatase family AM338_06715 PF00083 Sugar (and other) transporter AM338_06720 PF00455 DeoR C terminal sensor domain AM338_06720 PF08220 DeoR-like helix-turn-helix domain AM338_06725 PF00248 Aldo/keto reductase family AM338_06730 PF00294 pfkB family carbohydrate kinase AM338_06735 PF01116 Fructose-bisphosphate aldolase class-II AM338_06740 PF08240 Alcohol dehydrogenase GroES-like domain AM338_06740 PF00107 Zinc-binding dehydrogenase AM338_06745 PF00083 Sugar (and other) transporter AM338_06750 PF08240 Alcohol dehydrogenase GroES-like domain AM338_06750 PF00107 Zinc-binding dehydrogenase AM338_06755 PF07023 Protein of unknown function (DUF1315) AM338_06760 PF01641 SelR domain AM338_06765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM338_06765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM338_06770 PF01263 Aldose 1-epimerase AM338_06775 PF00248 Aldo/keto reductase family AM338_06780 PF06629 MltA-interacting protein MipA AM338_06785 PF08298 PrkA AAA domain AM338_06785 PF06798 PrkA serine protein kinase C-terminal domain AM338_06790 PF04285 Protein of unknown function (DUF444) AM338_06795 PF17158 Membrane-associated sensor, integral membrane domain AM338_06795 PF00990 Diguanylate cyclase, GGDEF domain AM338_06800 PF17155 Gammaproteobacterial periplasmic sensor domain AM338_06800 PF00990 Diguanylate cyclase, GGDEF domain AM338_06805 PF04073 Aminoacyl-tRNA editing domain AM338_06815 PF04284 Protein of unknown function (DUF441) AM338_06820 PF12833 Helix-turn-helix domain AM338_06820 PF02311 AraC-like ligand binding domain AM338_06825 PF07690 Major Facilitator Superfamily AM338_06830 PF04343 Protein of unknown function, DUF488 AM338_06835 PF03891 Domain of unknown function (DUF333) AM338_06840 PF13185 GAF domain AM338_06840 PF00990 Diguanylate cyclase, GGDEF domain AM338_06855 PF04226 Transglycosylase associated protein AM338_06860 PF08956 Domain of unknown function (DUF1869) AM338_06865 PF09313 Domain of unknown function (DUF1971) AM338_06870 PF01810 LysE type translocator AM338_06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_06875 PF03466 LysR substrate binding domain AM338_06880 PF00180 Isocitrate/isopropylmalate dehydrogenase AM338_06885 PF02028 BCCT, betaine/carnitine/choline family transporter AM338_06890 PF00355 Rieske [2Fe-2S] domain AM338_06890 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM338_06895 PF00175 Oxidoreductase NAD-binding domain AM338_06895 PF00970 Oxidoreductase FAD-binding domain AM338_06895 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_06900 PF00570 HRDC domain AM338_06900 PF01612 3'-5' exonuclease AM338_06905 PF13193 AMP-binding enzyme C-terminal domain AM338_06905 PF00501 AMP-binding enzyme AM338_06910 PF03843 Outer membrane lipoprotein Slp family AM338_06915 PF00814 Glycoprotease family AM338_06920 PF13307 Helicase C-terminal domain AM338_06920 PF04851 Type III restriction enzyme, res subunit AM338_06925 PF01042 Endoribonuclease L-PSP AM338_06930 PF08986 Domain of unknown function (DUF1889) AM338_06935 PF03701 Uncharacterised protein family (UPF0181) AM338_06940 PF00425 chorismate binding enzyme AM338_06940 PF04715 Anthranilate synthase component I, N terminal region AM338_06945 PF00293 NUDIX domain AM338_06950 PF03313 Serine dehydratase alpha chain AM338_06950 PF03315 Serine dehydratase beta chain AM338_06960 PF03471 Transporter associated domain AM338_06960 PF03741 Integral membrane protein TerC family AM338_06975 PF03610 PTS system fructose IIA component AM338_06975 PF03830 PTS system sorbose subfamily IIB component AM338_06980 PF03609 PTS system sorbose-specific iic component AM338_06985 PF03613 PTS system mannose/fructose/sorbose family IID component AM338_06990 PF06173 Protein of unknown function (DUF986) AM338_07000 PF02659 Putative manganese efflux pump AM338_07005 PF13847 Methyltransferase domain AM338_07010 PF00313 'Cold-shock' DNA-binding domain AM338_07015 PF10736 Protein of unknown function (DUF2627) AM338_07025 PF13974 YebO-like protein AM338_07030 PF13998 MgrB protein AM338_07035 PF13996 YobH-like protein AM338_07040 PF01614 Bacterial transcriptional regulator AM338_07040 PF09339 IclR helix-turn-helix domain AM338_07045 PF07690 Major Facilitator Superfamily AM338_07050 PF01435 Peptidase family M48 AM338_07055 PF17804 Tail specific protease N-terminal domain AM338_07055 PF00595 PDZ domain AM338_07055 PF03572 Peptidase family S41 AM338_07055 PF11818 C-terminal domain of tail specific protease (DUF3340) AM338_07060 PF17516 ProQ C-terminal domain AM338_07060 PF04352 ProQ/FINO family AM338_07065 PF13185 GAF domain AM338_07070 PF04403 Paraquat-inducible protein A AM338_07075 PF02470 MlaD protein AM338_07080 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AM338_07080 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AM338_07080 PF01189 16S rRNA methyltransferase RsmB/F AM338_07085 PF07351 Protein of unknown function (DUF1480) AM338_07090 PF07358 Protein of unknown function (DUF1482) AM338_07095 PF00149 Calcineurin-like phosphoesterase AM338_07100 PF10709 Protein of unknown function (DUF2511) AM338_07105 PF05425 Copper resistance protein D AM338_07110 PF04234 CopC domain AM338_07115 PF06440 DNA polymerase III, theta subunit AM338_07120 PF00795 Carbon-nitrogen hydrolase AM338_07125 PF00929 Exonuclease AM338_07130 PF00326 Prolyl oligopeptidase family AM338_07130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM338_07135 PF04391 Protein of unknown function (DUF533) AM338_07140 PF13995 YebF-like protein AM338_07145 PF07130 YebG protein AM338_07150 PF02222 ATP-grasp domain AM338_07155 PF01081 KDPG and KHG aldolase AM338_07160 PF00920 Dehydratase family AM338_07165 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AM338_07165 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AM338_07170 PF01418 Helix-turn-helix domain, rpiR family AM338_07170 PF01380 SIS domain AM338_07175 PF00224 Pyruvate kinase, barrel domain AM338_07175 PF02887 Pyruvate kinase, alpha/beta domain AM338_07180 PF03279 Bacterial lipid A biosynthesis acyltransferase AM338_07185 PF01551 Peptidase family M23 AM338_07185 PF08525 Opacity-associated protein A N-terminal motif AM338_07185 PF01476 LysM domain AM338_07190 PF01297 Zinc-uptake complex component A periplasmic AM338_07195 PF00005 ABC transporter AM338_07200 PF00950 ABC 3 transport family AM338_07205 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM338_07205 PF05491 RuvB C-terminal winged helix domain AM338_07205 PF17864 RuvB AAA lid domain AM338_07210 PF01330 RuvA N terminal domain AM338_07210 PF07499 RuvA, C-terminal domain AM338_07220 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AM338_07225 PF02075 Crossover junction endodeoxyribonuclease RuvC AM338_07230 PF01709 Transcriptional regulator AM338_07235 PF00293 NUDIX domain AM338_07240 PF02938 GAD domain AM338_07240 PF00152 tRNA synthetases class II (D, K and N) AM338_07240 PF01336 OB-fold nucleic acid binding domain AM338_07245 PF00857 Isochorismatase family AM338_07250 PF01904 Protein of unknown function DUF72 AM338_07255 PF01124 MAPEG family AM338_07260 PF13649 Methyltransferase domain AM338_07265 PF08003 Protein of unknown function (DUF1698) AM338_07270 PF00384 Molybdopterin oxidoreductase AM338_07270 PF18364 Molybdopterin oxidoreductase N-terminal domain AM338_07270 PF01568 Molydopterin dinucleotide binding domain AM338_07275 PF03264 NapC/NirT cytochrome c family, N-terminal region AM338_07280 PF03932 CutC family AM338_07285 PF06185 YecM protein AM338_07295 PF03485 Arginyl tRNA synthetase N terminal domain AM338_07295 PF05746 DALR anticodon binding domain AM338_07295 PF00750 tRNA synthetases class I (R) AM338_07300 PF07007 Lysozyme inhibitor LprI AM338_07305 PF06366 Flagellar protein FlhE AM338_07310 PF00771 FHIPEP family AM338_07315 PF01312 FlhB HrpN YscU SpaS Family AM338_07320 PF04344 Chemotaxis phosphatase, CheZ AM338_07325 PF00072 Response regulator receiver domain AM338_07330 PF00072 Response regulator receiver domain AM338_07330 PF01339 CheB methylesterase AM338_07335 PF01739 CheR methyltransferase, SAM binding domain AM338_07335 PF03705 CheR methyltransferase, all-alpha domain AM338_07340 PF00672 HAMP domain AM338_07340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM338_07340 PF02203 Tar ligand binding domain homologue AM338_07345 PF00672 HAMP domain AM338_07345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM338_07345 PF02203 Tar ligand binding domain homologue AM338_07350 PF01584 CheW-like domain AM338_07355 PF01584 CheW-like domain AM338_07355 PF01627 Hpt domain AM338_07355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_07355 PF02895 Signal transducing histidine kinase, homodimeric domain AM338_07355 PF09078 CheY binding AM338_07360 PF13677 Membrane MotB of proton-channel complex MotA/MotB AM338_07360 PF00691 OmpA family AM338_07365 PF01618 MotA/TolQ/ExbB proton channel family AM338_07370 PF05280 Flagellar transcriptional activator (FlhC) AM338_07375 PF05247 Flagellar transcriptional activator (FlhD) AM338_07380 PF00582 Universal stress protein family AM338_07385 PF00982 Glycosyltransferase family 20 AM338_07390 PF02358 Trehalose-phosphatase AM338_07395 PF02653 Branched-chain amino acid transport system / permease component AM338_07400 PF00005 ABC transporter AM338_07405 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_07415 PF00210 Ferritin-like domain AM338_07420 PF10964 Protein of unknown function (DUF2766) AM338_07430 PF13992 YecR-like lipoprotein AM338_07435 PF00210 Ferritin-like domain AM338_07440 PF10678 Protein of unknown function (DUF2492) AM338_07445 PF03222 Tryptophan/tyrosine permease family AM338_07450 PF02810 SEC-C motif AM338_07450 PF03695 Uncharacterised protein family (UPF0149) AM338_07470 PF01066 CDP-alcohol phosphatidyltransferase AM338_07475 PF08459 UvrC Helix-hairpin-helix N-terminal AM338_07475 PF02151 UvrB/uvrC motif AM338_07475 PF01541 GIY-YIG catalytic domain AM338_07480 PF00072 Response regulator receiver domain AM338_07480 PF00196 Bacterial regulatory proteins, luxR family AM338_07490 PF10769 Protein of unknown function (DUF2594) AM338_07495 PF00196 Bacterial regulatory proteins, luxR family AM338_07495 PF03472 Autoinducer binding domain AM338_07510 PF00291 Pyridoxal-phosphate dependent enzyme AM338_07520 PF02899 Phage integrase, N-terminal SAM-like domain AM338_07525 PF04545 Sigma-70, region 4 AM338_07525 PF04539 Sigma-70 region 3 AM338_07525 PF04542 Sigma-70 region 2 AM338_07530 PF12445 Flagellin protein AM338_07530 PF00700 Bacterial flagellin C-terminal helical region AM338_07530 PF00669 Bacterial flagellin N-terminal helical region AM338_07540 PF02465 Flagellar hook-associated protein 2 N-terminus AM338_07540 PF07195 Flagellar hook-associated protein 2 C-terminus AM338_07545 PF02561 Flagellar protein FliS AM338_07550 PF05400 Flagellar protein FliT AM338_07555 PF02806 Alpha amylase, C-terminal all-beta domain AM338_07555 PF00128 Alpha amylase, catalytic domain AM338_07560 PF13987 YedD-like protein AM338_07570 PF04143 Sulphur transport AM338_07575 PF01206 Sulfurtransferase TusA AM338_07580 PF02586 SOS response associated peptidase (SRAP) AM338_07590 PF17607 Family of unknown function (DUF5503) AM338_07600 PF02049 Flagellar hook-basal body complex protein FliE AM338_07605 PF01514 Secretory protein of YscJ/FliF family AM338_07605 PF08345 Flagellar M-ring protein C-terminal AM338_07610 PF01706 FliG C-terminal domain AM338_07610 PF14841 FliG middle domain AM338_07610 PF14842 FliG N-terminal domain AM338_07615 PF02108 Flagellar assembly protein FliH AM338_07620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM338_07620 PF18269 T3SS EscN ATPase C-terminal domain AM338_07625 PF02050 Flagellar FliJ protein AM338_07630 PF02120 Flagellar hook-length control protein FliK AM338_07635 PF03748 Flagellar basal body-associated protein FliL AM338_07640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AM338_07640 PF02154 Flagellar motor switch protein FliM AM338_07645 PF16973 Flagellar motor switch protein FliN N-terminal AM338_07645 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AM338_07650 PF04347 Flagellar biosynthesis protein, FliO AM338_07655 PF00813 FliP family AM338_07660 PF01313 Bacterial export proteins, family 3 AM338_07665 PF01311 Bacterial export proteins, family 1 AM338_07670 PF00196 Bacterial regulatory proteins, luxR family AM338_07675 PF10781 Dextransucrase DSRB AM338_07685 PF10733 Protein of unknown function (DUF2525) AM338_07705 PF09926 Uncharacterized small protein (DUF2158) AM338_07710 PF05661 Protein of unknown function (DUF808) AM338_07715 PF00892 EamA-like transporter family AM338_07720 PF03852 DNA mismatch endonuclease Vsr AM338_07725 PF18284 DNA methylase N-terminal domain AM338_07725 PF00145 C-5 cytosine-specific DNA methylase AM338_07730 PF01966 HD domain AM338_07740 PF00267 Gram-negative porin AM338_07755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_07755 PF00512 His Kinase A (phospho-acceptor) domain AM338_07760 PF00072 Response regulator receiver domain AM338_07760 PF00486 Transcriptional regulatory protein, C terminal AM338_07765 PF00576 HIUase/Transthyretin family AM338_07770 PF00174 Oxidoreductase molybdopterin binding domain AM338_07775 PF01794 Ferric reductase like transmembrane component AM338_07780 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AM338_07785 PF01292 Prokaryotic cytochrome b561 AM338_07800 PF06167 Glucose-regulated metallo-peptidase M90 AM338_07810 PF11924 Inverse autotransporter, beta-domain AM338_07810 PF09134 Invasin, domain 3 AM338_07810 PF02369 Bacterial Ig-like domain (group 1) AM338_07820 PF07690 Major Facilitator Superfamily AM338_07820 PF00083 Sugar (and other) transporter AM338_07825 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AM338_07825 PF01048 Phosphorylase superfamily AM338_07830 PF01709 Transcriptional regulator AM338_07845 PF01554 MatE AM338_07855 PF03466 LysR substrate binding domain AM338_07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_07860 PF03466 LysR substrate binding domain AM338_07870 PF13356 Arm DNA-binding domain AM338_07870 PF00589 Phage integrase family AM338_07875 PF00425 chorismate binding enzyme AM338_07880 PF07690 Major Facilitator Superfamily AM338_07885 PF00664 ABC transporter transmembrane region AM338_07885 PF00005 ABC transporter AM338_07890 PF08021 Siderophore-interacting FAD-binding domain AM338_07890 PF04954 Siderophore-interacting protein AM338_07890 PF00664 ABC transporter transmembrane region AM338_07890 PF00005 ABC transporter AM338_07900 PF00501 AMP-binding enzyme AM338_07900 PF00550 Phosphopantetheine attachment site AM338_07900 PF00668 Condensation domain AM338_07900 PF08242 Methyltransferase domain AM338_07905 PF00109 Beta-ketoacyl synthase, N-terminal domain AM338_07905 PF02801 Beta-ketoacyl synthase, C-terminal domain AM338_07905 PF00668 Condensation domain AM338_07905 PF16197 Ketoacyl-synthetase C-terminal extension AM338_07905 PF00550 Phosphopantetheine attachment site AM338_07905 PF00698 Acyl transferase domain AM338_07915 PF00975 Thioesterase domain AM338_07920 PF13193 AMP-binding enzyme C-terminal domain AM338_07920 PF00501 AMP-binding enzyme AM338_07925 PF07715 TonB-dependent Receptor Plug Domain AM338_07925 PF00593 TonB dependent receptor AM338_07970 PF04956 TrbC/VIRB2 family AM338_07975 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AM338_08000 PF03524 Conjugal transfer protein AM338_08005 PF03743 Bacterial conjugation TrbI-like protein AM338_08010 PF00437 Type II/IV secretion system protein AM338_08055 PF04002 RadC-like JAB domain AM338_08135 PF17969 L,D-transpeptidase C-terminal domain AM338_08135 PF03734 L,D-transpeptidase catalytic domain AM338_08140 PF02277 Phosphoribosyltransferase AM338_08145 PF02654 Cobalamin-5-phosphate synthase AM338_08150 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AM338_08175 PF06067 Domain of unknown function (DUF932) AM338_08180 PF03230 Antirestriction protein AM338_08185 PF04002 RadC-like JAB domain AM338_08190 PF06174 Protein of unknown function (DUF987) AM338_08195 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A AM338_08200 PF06755 CbtA_toxin of type IV toxin-antitoxin system AM338_08215 PF10662 Ethanolamine utilisation - propanediol utilisation AM338_08220 PF04363 Protein of unknown function (DUF496) AM338_08225 PF04632 Fusaric acid resistance protein family AM338_08230 PF06445 GyrI-like small molecule binding domain AM338_08235 PF01610 Transposase AM338_08235 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM338_08235 PF13542 Helix-turn-helix domain of transposase family ISL3 AM338_08240 PF07943 Penicillin-binding protein 5, C-terminal domain AM338_08240 PF00768 D-alanyl-D-alanine carboxypeptidase AM338_08245 PF08411 Exonuclease C-terminal AM338_08245 PF00929 Exonuclease AM338_08250 PF01206 Sulfurtransferase TusA AM338_08255 PF04143 Sulphur transport AM338_08260 PF13520 Amino acid permease AM338_08265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_08265 PF03466 LysR substrate binding domain AM338_08270 PF01370 NAD dependent epimerase/dehydratase family AM338_08275 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AM338_08280 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AM338_08295 PF01634 ATP phosphoribosyltransferase AM338_08295 PF08029 HisG, C-terminal domain AM338_08300 PF00815 Histidinol dehydrogenase AM338_08305 PF00155 Aminotransferase class I and II AM338_08310 PF00475 Imidazoleglycerol-phosphate dehydratase AM338_08310 PF08645 Polynucleotide kinase 3 phosphatase AM338_08315 PF00117 Glutamine amidotransferase class-I AM338_08320 PF00977 Histidine biosynthesis protein AM338_08325 PF00977 Histidine biosynthesis protein AM338_08330 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AM338_08330 PF01502 Phosphoribosyl-AMP cyclohydrolase AM338_08340 PF00534 Glycosyl transferases group 1 AM338_08340 PF00862 Sucrose synthase AM338_08345 PF13439 Glycosyltransferase Family 4 AM338_08345 PF00534 Glycosyl transferases group 1 AM338_08350 PF13847 Methyltransferase domain AM338_08350 PF00069 Protein kinase domain AM338_08355 PF00005 ABC transporter AM338_08380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM338_08380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM338_08380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM338_08385 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AM338_08390 PF04321 RmlD substrate binding domain AM338_08395 PF00483 Nucleotidyl transferase AM338_08400 PF16363 GDP-mannose 4,6 dehydratase AM338_08415 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AM338_08415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM338_08450 PF00535 Glycosyl transferase family 2 AM338_08455 PF02397 Bacterial sugar transferase AM338_08460 PF13807 G-rich domain on putative tyrosine kinase AM338_08460 PF02706 Chain length determinant protein AM338_08460 PF13614 AAA domain AM338_08465 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM338_08470 PF10531 SLBB domain AM338_08470 PF02563 Polysaccharide biosynthesis/export protein AM338_08470 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AM338_08475 PF14052 Capsule assembly protein Wzi AM338_08485 PF01569 PAP2 superfamily AM338_08495 PF03471 Transporter associated domain AM338_08495 PF00571 CBS domain AM338_08495 PF03741 Integral membrane protein TerC family AM338_08510 PF05170 AsmA family AM338_08515 PF00692 dUTPase AM338_08520 PF00485 Phosphoribulokinase / Uridine kinase family AM338_08525 PF05231 MASE1 AM338_08525 PF00563 EAL domain AM338_08525 PF13426 PAS domain AM338_08525 PF00990 Diguanylate cyclase, GGDEF domain AM338_08525 PF08447 PAS fold AM338_08525 PF08448 PAS fold AM338_08530 PF06029 AlkA N-terminal domain AM338_08530 PF00730 HhH-GPD superfamily base excision DNA repair protein AM338_08535 PF00012 Hsp70 protein AM338_08545 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) AM338_08555 PF00092 von Willebrand factor type A domain AM338_08565 PF13533 Biotin-lipoyl like AM338_08570 PF00873 AcrB/AcrD/AcrF family AM338_08575 PF00873 AcrB/AcrD/AcrF family AM338_08580 PF07690 Major Facilitator Superfamily AM338_08585 PF00512 His Kinase A (phospho-acceptor) domain AM338_08585 PF00672 HAMP domain AM338_08585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_08590 PF00072 Response regulator receiver domain AM338_08590 PF00486 Transcriptional regulatory protein, C terminal AM338_08595 PF07411 Domain of unknown function (DUF1508) AM338_08615 PF00781 Diacylglycerol kinase catalytic domain AM338_08620 PF13419 Haloacid dehalogenase-like hydrolase AM338_08625 PF07690 Major Facilitator Superfamily AM338_08630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_08630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_08635 PF01232 Mannitol dehydrogenase Rossmann domain AM338_08635 PF08125 Mannitol dehydrogenase C-terminal domain AM338_08640 PF04198 Putative sugar-binding domain AM338_08645 PF00356 Bacterial regulatory proteins, lacI family AM338_08650 PF00106 short chain dehydrogenase AM338_08655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_08655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_08660 PF07690 Major Facilitator Superfamily AM338_08665 PF01791 DeoC/LacD family aldolase AM338_08670 PF03825 Nucleoside H+ symporter AM338_08675 PF03747 ADP-ribosylglycohydrolase AM338_08680 PF00294 pfkB family carbohydrate kinase AM338_08685 PF07702 UTRA domain AM338_08685 PF00392 Bacterial regulatory proteins, gntR family AM338_08690 PF01183 Glycosyl hydrolases family 25 AM338_08695 PF08543 Phosphomethylpyrimidine kinase AM338_08700 PF02110 Hydroxyethylthiazole kinase family AM338_08705 PF02583 Metal-sensitive transcriptional repressor AM338_08710 PF03824 High-affinity nickel-transport protein AM338_08715 PF11776 Nickel/cobalt transporter regulator AM338_08720 PF00419 Fimbrial protein AM338_08725 PF13953 PapC C-terminal domain AM338_08725 PF00577 Outer membrane usher protein AM338_08725 PF13954 PapC N-terminal domain AM338_08730 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_08730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_08735 PF00419 Fimbrial protein AM338_08745 PF10836 Protein of unknown function (DUF2574) AM338_08750 PF10609 NUBPL iron-transfer P-loop NTPase AM338_08755 PF09334 tRNA synthetases class I (M) AM338_08755 PF01588 Putative tRNA binding domain AM338_08765 PF13569 Domain of unknown function (DUF4132) AM338_08775 PF07728 AAA domain (dynein-related subfamily) AM338_08785 PF05762 VWA domain containing CoxE-like protein AM338_08790 PF04434 SWIM zinc finger AM338_08795 PF06998 Protein of unknown function (DUF1307) AM338_08800 PF07308 Protein of unknown function (DUF1456) AM338_08805 PF00072 Response regulator receiver domain AM338_08805 PF04397 LytTr DNA-binding domain AM338_08810 PF07694 5TMR of 5TMR-LYT AM338_08810 PF06580 Histidine kinase AM338_08815 PF13411 MerR HTH family regulatory protein AM338_08825 PF00528 Binding-protein-dependent transport system inner membrane component AM338_08830 PF00005 ABC transporter AM338_08835 PF00528 Binding-protein-dependent transport system inner membrane component AM338_08840 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM338_08845 PF01915 Glycosyl hydrolase family 3 C-terminal domain AM338_08845 PF00933 Glycosyl hydrolase family 3 N terminal domain AM338_08845 PF14310 Fibronectin type III-like domain AM338_08850 PF09330 D-lactate dehydrogenase, membrane binding AM338_08850 PF01565 FAD binding domain AM338_08855 PF00768 D-alanyl-D-alanine carboxypeptidase AM338_08860 PF04893 Yip1 domain AM338_08865 PF09335 SNARE associated Golgi protein AM338_08875 PF02321 Outer membrane efflux protein AM338_08895 PF01207 Dihydrouridine synthase (Dus) AM338_08900 PF03788 LrgA family AM338_08905 PF04172 LrgB-like family AM338_08910 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AM338_08910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM338_08915 PF02698 DUF218 domain AM338_08920 PF10808 Protein of unknown function (DUF2542) AM338_08925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM338_08925 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_08930 PF01180 Dihydroorotate dehydrogenase AM338_08935 PF02653 Branched-chain amino acid transport system / permease component AM338_08940 PF00005 ABC transporter AM338_08945 PF13407 Periplasmic binding protein domain AM338_08950 PF00356 Bacterial regulatory proteins, lacI family AM338_08960 PF04235 Protein of unknown function (DUF418) AM338_08965 PF01227 GTP cyclohydrolase I AM338_08980 PF00756 Putative esterase AM338_08985 PF00593 TonB dependent receptor AM338_08985 PF07715 TonB-dependent Receptor Plug Domain AM338_08995 PF00324 Amino acid permease AM338_09005 PF03466 LysR substrate binding domain AM338_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_09010 PF03601 Conserved hypothetical protein 698 AM338_09015 PF01261 Xylose isomerase-like TIM barrel AM338_09020 PF00294 pfkB family carbohydrate kinase AM338_09025 PF01773 Na+ dependent nucleoside transporter N-terminus AM338_09025 PF07662 Na+ dependent nucleoside transporter C-terminus AM338_09030 PF01156 Inosine-uridine preferring nucleoside hydrolase AM338_09035 PF00027 Cyclic nucleotide-binding domain AM338_09040 PF01773 Na+ dependent nucleoside transporter N-terminus AM338_09040 PF07662 Na+ dependent nucleoside transporter C-terminus AM338_09045 PF04227 Indigoidine synthase A like protein AM338_09050 PF00294 pfkB family carbohydrate kinase AM338_09055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_09055 PF02378 Phosphotransferase system, EIIC AM338_09060 PF00294 pfkB family carbohydrate kinase AM338_09065 PF00381 PTS HPr component phosphorylation site AM338_09065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_09070 PF07690 Major Facilitator Superfamily AM338_09075 PF03692 Putative zinc- or iron-chelating domain AM338_09080 PF01132 Elongation factor P (EF-P) OB domain AM338_09080 PF08207 Elongation factor P (EF-P) KOW-like domain AM338_09080 PF09285 Elongation factor P, C-terminal AM338_09085 PF01232 Mannitol dehydrogenase Rossmann domain AM338_09085 PF08125 Mannitol dehydrogenase C-terminal domain AM338_09090 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM338_09090 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM338_09095 PF01569 PAP2 superfamily AM338_09100 PF00877 NlpC/P60 family AM338_09105 PF00563 EAL domain AM338_09105 PF12792 CSS motif domain associated with EAL AM338_09110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_09115 PF00528 Binding-protein-dependent transport system inner membrane component AM338_09120 PF12911 N-terminal TM domain of oligopeptide transport permease C AM338_09120 PF00528 Binding-protein-dependent transport system inner membrane component AM338_09125 PF00005 ABC transporter AM338_09125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_09130 PF13989 YejG-like protein AM338_09140 PF07690 Major Facilitator Superfamily AM338_09145 PF00849 RNA pseudouridylate synthase AM338_09145 PF01479 S4 domain AM338_09155 PF00271 Helicase conserved C-terminal domain AM338_09155 PF04851 Type III restriction enzyme, res subunit AM338_09160 PF01386 Ribosomal L25p family AM338_09165 PF04245 37-kD nucleoid-associated bacterial protein AM338_09170 PF07208 Protein of unknown function (DUF1414) AM338_09175 PF00884 Sulfatase AM338_09175 PF11893 Domain of unknown function (DUF3413) AM338_09190 PF03797 Autotransporter beta-domain AM338_09190 PF03212 Pertactin AM338_09190 PF16168 Adhesin of bacterial autotransporter system, probable stalk AM338_09200 PF00072 Response regulator receiver domain AM338_09200 PF00196 Bacterial regulatory proteins, luxR family AM338_09205 PF03918 Cytochrome C biogenesis protein AM338_09210 PF08534 Redoxin AM338_09215 PF01578 Cytochrome C assembly protein AM338_09215 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AM338_09220 PF03100 CcmE AM338_09225 PF04995 Heme exporter protein D (CcmD) AM338_09230 PF01578 Cytochrome C assembly protein AM338_09235 PF03379 CcmB protein AM338_09240 PF00005 ABC transporter AM338_09245 PF03264 NapC/NirT cytochrome c family, N-terminal region AM338_09250 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AM338_09255 PF13237 4Fe-4S dicluster domain AM338_09255 PF12801 4Fe-4S binding domain AM338_09260 PF12838 4Fe-4S dicluster domain AM338_09260 PF12800 4Fe-4S binding domain AM338_09265 PF01568 Molydopterin dinucleotide binding domain AM338_09265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_09265 PF00384 Molybdopterin oxidoreductase AM338_09270 PF03927 NapD protein AM338_09275 PF13187 4Fe-4S dicluster domain AM338_09275 PF12800 4Fe-4S binding domain AM338_09275 PF00037 4Fe-4S binding domain AM338_09285 PF03974 Ecotin AM338_09290 PF06039 Malate:quinone oxidoreductase (Mqo) AM338_09295 PF00005 ABC transporter AM338_09300 PF13532 2OG-Fe(II) oxygenase superfamily AM338_09305 PF02805 Metal binding domain of Ada AM338_09305 PF12833 Helix-turn-helix domain AM338_09305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM338_09305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM338_09310 PF02424 ApbE family AM338_09315 PF00267 Gram-negative porin AM338_09330 PF01627 Hpt domain AM338_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_09330 PF16359 RcsD-ABL domain AM338_09335 PF00196 Bacterial regulatory proteins, luxR family AM338_09335 PF00072 Response regulator receiver domain AM338_09340 PF00512 His Kinase A (phospho-acceptor) domain AM338_09340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_09340 PF00072 Response regulator receiver domain AM338_09340 PF09456 RcsC Alpha-Beta-Loop (ABL) AM338_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_09345 PF00512 His Kinase A (phospho-acceptor) domain AM338_09345 PF00989 PAS fold AM338_09350 PF00158 Sigma-54 interaction domain AM338_09350 PF00072 Response regulator receiver domain AM338_09350 PF02954 Bacterial regulatory protein, Fis family AM338_09355 PF01144 Coenzyme A transferase AM338_09360 PF01144 Coenzyme A transferase AM338_09365 PF02667 Short chain fatty acid transporter AM338_09370 PF02803 Thiolase, C-terminal domain AM338_09370 PF00108 Thiolase, N-terminal domain AM338_09375 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) AM338_09380 PF10062 Predicted secreted protein (DUF2300) AM338_09380 PF08486 Stage II sporulation protein AM338_09385 PF01835 MG2 domain AM338_09385 PF07703 Alpha-2-macroglobulin bait region domain AM338_09385 PF00207 Alpha-2-macroglobulin family AM338_09390 PF06672 Protein of unknown function (DUF1175) AM338_09395 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) AM338_09400 PF03989 DNA gyrase C-terminal domain, beta-propeller AM338_09400 PF00521 DNA gyrase/topoisomerase IV, subunit A AM338_09410 PF03797 Autotransporter beta-domain AM338_09410 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat AM338_09410 PF12951 Passenger-associated-transport-repeat AM338_09420 PF03477 ATP cone domain AM338_09420 PF00317 Ribonucleotide reductase, all-alpha domain AM338_09420 PF02867 Ribonucleotide reductase, barrel domain AM338_09425 PF00268 Ribonucleotide reductase, small chain AM338_09430 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_09445 PF03009 Glycerophosphoryl diester phosphodiesterase family AM338_09450 PF07690 Major Facilitator Superfamily AM338_09455 PF01266 FAD dependent oxidoreductase AM338_09455 PF04324 BFD-like [2Fe-2S] binding domain AM338_09460 PF00890 FAD binding domain AM338_09465 PF02754 Cysteine-rich domain AM338_09465 PF13183 4Fe-4S dicluster domain AM338_09470 PF04754 Putative transposase, YhgA-like AM338_09480 PF03328 HpcH/HpaI aldolase/citrate lyase family AM338_09485 PF07690 Major Facilitator Superfamily AM338_09490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM338_09490 PF13378 Enolase C-terminal domain-like AM338_09495 PF01614 Bacterial transcriptional regulator AM338_09495 PF09339 IclR helix-turn-helix domain AM338_09500 PF01614 Bacterial transcriptional regulator AM338_09500 PF09339 IclR helix-turn-helix domain AM338_09505 PF00994 Probable molybdopterin binding domain AM338_09510 PF07437 YfaZ precursor AM338_09515 PF00293 NUDIX domain AM338_09520 PF00300 Histidine phosphatase superfamily (branch 1) AM338_09525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM338_09530 PF00535 Glycosyl transferase family 2 AM338_09535 PF01370 NAD dependent epimerase/dehydratase family AM338_09535 PF02911 Formyl transferase, C-terminal domain AM338_09535 PF00551 Formyl transferase AM338_09540 PF01522 Polysaccharide deacetylase AM338_09545 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AM338_09550 PF00892 EamA-like transporter family AM338_09565 PF13193 AMP-binding enzyme C-terminal domain AM338_09565 PF00501 AMP-binding enzyme AM338_09570 PF13378 Enolase C-terminal domain-like AM338_09575 PF00378 Enoyl-CoA hydratase/isomerase AM338_09580 PF12697 Alpha/beta hydrolase family AM338_09585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_09585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_09585 PF16582 Middle domain of thiamine pyrophosphate AM338_09590 PF00425 chorismate binding enzyme AM338_09595 PF05957 Bacterial protein of unknown function (DUF883) AM338_09600 PF13673 Acetyltransferase (GNAT) domain AM338_09605 PF12706 Beta-lactamase superfamily domain AM338_09610 PF02902 Ulp1 protease family, C-terminal catalytic domain AM338_09615 PF00092 von Willebrand factor type A domain AM338_09615 PF12034 Domain of unknown function (DUF3520) AM338_09615 PF12450 von Willebrand factor AM338_09620 PF04389 Peptidase family M28 AM338_09625 PF08974 Domain of unknown function (DUF1877) AM338_09645 PF00361 Proton-conducting membrane transporter AM338_09650 PF00361 Proton-conducting membrane transporter AM338_09655 PF00361 Proton-conducting membrane transporter AM338_09655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM338_09660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM338_09665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM338_09670 PF12838 4Fe-4S dicluster domain AM338_09675 PF00146 NADH dehydrogenase AM338_09680 PF00384 Molybdopterin oxidoreductase AM338_09680 PF01568 Molydopterin dinucleotide binding domain AM338_09680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM338_09680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM338_09685 PF10531 SLBB domain AM338_09685 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM338_09685 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM338_09695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM338_09695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM338_09700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM338_09705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM338_09710 PF03466 LysR substrate binding domain AM338_09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_09720 PF00155 Aminotransferase class I and II AM338_09730 PF02080 TrkA-C domain AM338_09730 PF03600 Citrate transporter AM338_09735 PF13419 Haloacid dehalogenase-like hydrolase AM338_09740 PF03887 YfbU domain AM338_09745 PF04217 Protein of unknown function, DUF412 AM338_09750 PF00871 Acetokinase family AM338_09755 PF01515 Phosphate acetyl/butaryl transferase AM338_09755 PF07085 DRTGG domain AM338_09760 PF03606 C4-dicarboxylate anaerobic carrier AM338_09765 PF00293 NUDIX domain AM338_09770 PF12850 Calcineurin-like phosphoesterase superfamily domain AM338_09775 PF02798 Glutathione S-transferase, N-terminal domain AM338_09775 PF14834 Glutathione S-transferase, C-terminal domain AM338_09780 PF00043 Glutathione S-transferase, C-terminal domain AM338_09780 PF02798 Glutathione S-transferase, N-terminal domain AM338_09785 PF02152 Dihydroneopterin aldolase AM338_09790 PF01370 NAD dependent epimerase/dehydratase family AM338_09790 PF08338 Domain of unknown function (DUF1731) AM338_09795 PF04754 Putative transposase, YhgA-like AM338_09800 PF00005 ABC transporter AM338_09805 PF00528 Binding-protein-dependent transport system inner membrane component AM338_09810 PF00528 Binding-protein-dependent transport system inner membrane component AM338_09815 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_09820 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_09825 PF02441 Flavoprotein AM338_09830 PF00156 Phosphoribosyl transferase domain AM338_09835 PF02674 Colicin V production protein AM338_09840 PF05036 Sporulation related domain AM338_09845 PF08245 Mur ligase middle domain AM338_09845 PF02875 Mur ligase family, glutamate ligase domain AM338_09850 PF17848 Acetyl-coA carboxylase zinc finger domain AM338_09850 PF01039 Carboxyl transferase domain AM338_09855 PF09335 SNARE associated Golgi protein AM338_09860 PF01416 tRNA pseudouridine synthase AM338_09865 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM338_09865 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM338_09870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM338_09870 PF11890 Domain of unknown function (DUF3410) AM338_09870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM338_09880 PF07690 Major Facilitator Superfamily AM338_09890 PF02801 Beta-ketoacyl synthase, C-terminal domain AM338_09890 PF00109 Beta-ketoacyl synthase, N-terminal domain AM338_09895 PF01266 FAD dependent oxidoreductase AM338_09895 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM338_09900 PF08891 YfcL protein AM338_09905 PF04315 Elongation factor P hydroxylase AM338_09910 PF01925 Sulfite exporter TauE/SafE AM338_09915 PF03411 Penicillin-insensitive murein endopeptidase AM338_09920 PF01264 Chorismate synthase AM338_09925 PF05175 Methyltransferase small domain AM338_09930 PF01713 Smr domain AM338_09935 PF11245 Protein of unknown function (DUF2544) AM338_09940 PF00419 Fimbrial protein AM338_09945 PF00419 Fimbrial protein AM338_09950 PF00419 Fimbrial protein AM338_09955 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_09955 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_09960 PF00577 Outer membrane usher protein AM338_09960 PF13954 PapC N-terminal domain AM338_09960 PF13953 PapC C-terminal domain AM338_09965 PF00419 Fimbrial protein AM338_09970 PF00300 Histidine phosphatase superfamily (branch 1) AM338_09975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM338_09975 PF00378 Enoyl-CoA hydratase/isomerase AM338_09975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM338_09980 PF02803 Thiolase, C-terminal domain AM338_09980 PF00108 Thiolase, N-terminal domain AM338_09985 PF04175 Protein of unknown function (DUF406) AM338_09995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM338_10010 PF04333 MlaA lipoprotein AM338_10020 PF01226 Formate/nitrite transporter AM338_10030 PF01306 LacY proton/sugar symporter AM338_10035 PF00294 pfkB family carbohydrate kinase AM338_10040 PF00251 Glycosyl hydrolases family 32 N-terminal domain AM338_10040 PF08244 Glycosyl hydrolases family 32 C terminal AM338_10045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_10045 PF00356 Bacterial regulatory proteins, lacI family AM338_10055 PF00291 Pyridoxal-phosphate dependent enzyme AM338_10060 PF07690 Major Facilitator Superfamily AM338_10065 PF00529 HlyD membrane-fusion protein of T1SS AM338_10065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_10070 PF00072 Response regulator receiver domain AM338_10070 PF00196 Bacterial regulatory proteins, luxR family AM338_10075 PF00072 Response regulator receiver domain AM338_10075 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_10075 PF01627 Hpt domain AM338_10075 PF00512 His Kinase A (phospho-acceptor) domain AM338_10075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_10080 PF02515 CoA-transferase family III AM338_10085 PF03547 Membrane transport protein AM338_10090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_10090 PF00205 Thiamine pyrophosphate enzyme, central domain AM338_10090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_10095 PF02515 CoA-transferase family III AM338_10100 PF10938 YfdX protein AM338_10110 PF10810 Protein of unknown function (DUF2545) AM338_10115 PF03279 Bacterial lipid A biosynthesis acyltransferase AM338_10120 PF00155 Aminotransferase class I and II AM338_10125 PF07694 5TMR of 5TMR-LYT AM338_10125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_10125 PF06580 Histidine kinase AM338_10130 PF00072 Response regulator receiver domain AM338_10130 PF04397 LytTr DNA-binding domain AM338_10140 PF05524 PEP-utilising enzyme, N-terminal AM338_10140 PF00391 PEP-utilising enzyme, mobile domain AM338_10140 PF02896 PEP-utilising enzyme, TIM barrel domain AM338_10140 PF00381 PTS HPr component phosphorylation site AM338_10140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_10145 PF05343 M42 glutamyl aminopeptidase AM338_10150 PF01321 Creatinase/Prolidase N-terminal domain AM338_10150 PF00557 Metallopeptidase family M24 AM338_10155 PF02378 Phosphotransferase system, EIIC AM338_10160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_10165 PF02685 Glucokinase AM338_10170 PF00654 Voltage gated chloride channel AM338_10175 PF10697 Protein of unknown function (DUF2502) AM338_10180 PF01566 Natural resistance-associated macrophage protein AM338_10185 PF07670 Nucleoside recognition AM338_10185 PF07662 Na+ dependent nucleoside transporter C-terminus AM338_10185 PF01773 Na+ dependent nucleoside transporter N-terminus AM338_10190 PF01609 Transposase DDE domain AM338_10195 PF05231 MASE1 AM338_10195 PF00563 EAL domain AM338_10210 PF07037 Putative transcription regulator (DUF1323) AM338_10215 PF07037 Putative transcription regulator (DUF1323) AM338_10220 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM338_10245 PF03466 LysR substrate binding domain AM338_10245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_10255 PF03825 Nucleoside H+ symporter AM338_10260 PF01048 Phosphorylase superfamily AM338_10265 PF03502 Nucleoside-specific channel-forming protein, Tsx AM338_10270 PF03466 LysR substrate binding domain AM338_10270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_10275 PF13593 SBF-like CPA transporter family (DUF4137) AM338_10280 PF12843 Putative quorum-sensing-regulated virulence factor AM338_10285 PF12826 Helix-hairpin-helix motif AM338_10285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM338_10285 PF01653 NAD-dependent DNA ligase adenylation domain AM338_10285 PF00533 BRCA1 C Terminus (BRCT) domain AM338_10285 PF03120 NAD-dependent DNA ligase OB-fold domain AM338_10290 PF04354 ZipA, C-terminal FtsZ-binding domain AM338_10300 PF00291 Pyridoxal-phosphate dependent enzyme AM338_10305 PF00381 PTS HPr component phosphorylation site AM338_10310 PF00391 PEP-utilising enzyme, mobile domain AM338_10310 PF05524 PEP-utilising enzyme, N-terminal AM338_10310 PF02896 PEP-utilising enzyme, TIM barrel domain AM338_10315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM338_10320 PF08543 Phosphomethylpyrimidine kinase AM338_10325 PF17263 Family of unknown function (DUF5329) AM338_10330 PF05406 WGR domain AM338_10335 PF00291 Pyridoxal-phosphate dependent enzyme AM338_10340 PF00005 ABC transporter AM338_10345 PF00528 Binding-protein-dependent transport system inner membrane component AM338_10350 PF00528 Binding-protein-dependent transport system inner membrane component AM338_10370 PF01380 SIS domain AM338_10370 PF01418 Helix-turn-helix domain, rpiR family AM338_10375 PF01380 SIS domain AM338_10380 PF02378 Phosphotransferase system, EIIC AM338_10380 PF00367 phosphotransferase system, EIIB AM338_10385 PF00144 Beta-lactamase AM338_10390 PF04261 Dyp-type peroxidase family AM338_10395 PF06572 Protein of unknown function (DUF1131) AM338_10400 PF11143 Protein of unknown function (DUF2919) AM338_10405 PF00583 Acetyltransferase (GNAT) family AM338_10410 PF01520 N-acetylmuramoyl-L-alanine amidase AM338_10415 PF01218 Coproporphyrinogen III oxidase AM338_10420 PF12833 Helix-turn-helix domain AM338_10425 PF16365 Ethanolamine utilization protein EutK C-terminus AM338_10425 PF00936 BMC domain AM338_10430 PF00936 BMC domain AM338_10435 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM338_10440 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM338_10445 PF06277 Ethanolamine utilisation protein EutA AM338_10450 PF04346 Ethanolamine utilisation protein, EutH AM338_10455 PF00465 Iron-containing alcohol dehydrogenase AM338_10465 PF00171 Aldehyde dehydrogenase family AM338_10470 PF03319 Ethanolamine utilisation protein EutN/carboxysome AM338_10475 PF00936 BMC domain AM338_10480 PF01515 Phosphate acetyl/butaryl transferase AM338_10485 PF01923 Cobalamin adenosyltransferase AM338_10490 PF06249 Ethanolamine utilisation protein EutQ AM338_10495 PF10662 Ethanolamine utilisation - propanediol utilisation AM338_10500 PF00936 BMC domain AM338_10505 PF03949 Malic enzyme, NAD binding domain AM338_10505 PF01515 Phosphate acetyl/butaryl transferase AM338_10505 PF00390 Malic enzyme, N-terminal domain AM338_10515 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM338_10520 PF02780 Transketolase, C-terminal domain AM338_10520 PF00456 Transketolase, thiamine diphosphate binding domain AM338_10520 PF02779 Transketolase, pyrimidine binding domain AM338_10525 PF06674 Protein of unknown function (DUF1176) AM338_10530 PF00293 NUDIX domain AM338_10535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_10535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM338_10535 PF13247 4Fe-4S dicluster domain AM338_10540 PF07730 Histidine kinase AM338_10540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_10540 PF00672 HAMP domain AM338_10540 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM338_10545 PF00873 AcrB/AcrD/AcrF family AM338_10550 PF03960 ArsC family AM338_10555 PF07687 Peptidase dimerisation domain AM338_10555 PF01546 Peptidase family M20/M25/M40 AM338_10560 PF13980 Uncharacterised protein family (UPF0370) AM338_10565 PF02230 Phospholipase/Carboxylesterase AM338_10570 PF08351 Domain of unknown function (DUF1726) AM338_10570 PF05127 Helicase AM338_10570 PF17176 tRNA-binding domain AM338_10570 PF13718 GNAT acetyltransferase 2 AM338_10575 PF04228 Putative neutral zinc metallopeptidase AM338_10580 PF01259 SAICAR synthetase AM338_10585 PF06804 NlpB/DapX lipoprotein AM338_10590 PF00701 Dihydrodipicolinate synthetase family AM338_10595 PF01842 ACT domain AM338_10600 PF00578 AhpC/TSA family AM338_10605 PF00037 4Fe-4S binding domain AM338_10605 PF12798 4Fe-4S binding domain AM338_10610 PF00361 Proton-conducting membrane transporter AM338_10615 PF00146 NADH dehydrogenase AM338_10620 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM338_10620 PF00361 Proton-conducting membrane transporter AM338_10625 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM338_10630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM338_10630 PF00361 Proton-conducting membrane transporter AM338_10635 PF00374 Nickel-dependent hydrogenase AM338_10635 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM338_10635 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM338_10640 PF12838 4Fe-4S dicluster domain AM338_10645 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM338_10650 PF07450 Formate hydrogenlyase maturation protein HycH AM338_10655 PF01590 GAF domain AM338_10655 PF00158 Sigma-54 interaction domain AM338_10660 PF01226 Formate/nitrite transporter AM338_10670 PF01594 AI-2E family transporter AM338_10675 PF01435 Peptidase family M48 AM338_10680 PF03960 ArsC family AM338_10685 PF00308 Bacterial dnaA protein AM338_10690 PF00860 Permease family AM338_10705 PF00586 AIR synthase related protein, N-terminal domain AM338_10705 PF02769 AIR synthase related protein, C-terminal domain AM338_10710 PF00551 Formyl transferase AM338_10715 PF17941 Polyphosphate kinase C-terminal domain 1 AM338_10715 PF13089 Polyphosphate kinase N-terminal domain AM338_10715 PF02503 Polyphosphate kinase middle domain AM338_10715 PF13090 Polyphosphate kinase C-terminal domain 2 AM338_10720 PF02541 Ppx/GppA phosphatase family AM338_10725 PF05231 MASE1 AM338_10725 PF00563 EAL domain AM338_10735 PF11119 Protein of unknown function (DUF2633) AM338_10745 PF05433 Glycine zipper 2TM domain AM338_10750 PF17358 Family of unknown function (DUF5384) AM338_10755 PF02540 NAD synthase AM338_10755 PF00958 GMP synthase C terminal domain AM338_10755 PF00117 Glutamine amidotransferase class-I AM338_10760 PF00571 CBS domain AM338_10760 PF00478 IMP dehydrogenase / GMP reductase domain AM338_10765 PF02601 Exonuclease VII, large subunit AM338_10765 PF13742 OB-fold nucleic acid binding domain AM338_10770 PF07191 zinc-ribbons AM338_10775 PF01926 50S ribosome-binding GTPase AM338_10775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM338_10780 PF13360 PQQ-like domain AM338_10785 PF09976 Tetratricopeptide repeat-like domain AM338_10790 PF13393 Histidyl-tRNA synthetase AM338_10790 PF03129 Anticodon binding domain AM338_10795 PF04551 GcpE protein AM338_10800 PF13464 Domain of unknown function (DUF4115) AM338_10805 PF04055 Radical SAM superfamily AM338_10810 PF00334 Nucleoside diphosphate kinase AM338_10815 PF06832 Penicillin-Binding Protein C-terminus Family AM338_10815 PF00912 Transglycosylase AM338_10815 PF00905 Penicillin binding protein transpeptidase domain AM338_10820 PF01835 MG2 domain AM338_10820 PF17962 Bacterial macroglobulin domain 6 AM338_10820 PF07703 Alpha-2-macroglobulin bait region domain AM338_10820 PF00207 Alpha-2-macroglobulin family AM338_10820 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AM338_10820 PF07678 A-macroglobulin TED domain AM338_10820 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AM338_10820 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AM338_10820 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AM338_10825 PF00581 Rhodanese-like domain AM338_10830 PF14581 SseB protein C-terminal domain AM338_10830 PF07179 SseB protein N-terminal domain AM338_10835 PF00883 Cytosol aminopeptidase family, catalytic domain AM338_10835 PF12404 Peptidase AM338_10840 PF04384 Iron-sulphur cluster assembly AM338_10845 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_10850 PF00012 Hsp70 protein AM338_10855 PF07743 HSCB C-terminal oligomerisation domain AM338_10860 PF01521 Iron-sulphur cluster biosynthesis AM338_10865 PF01592 NifU-like N terminal domain AM338_10870 PF00266 Aminotransferase class-V AM338_10875 PF02082 Transcriptional regulator AM338_10880 PF00588 SpoU rRNA Methylase family AM338_10885 PF00459 Inositol monophosphatase family AM338_10890 PF12146 Serine aminopeptidase, S33 AM338_10895 PF00874 PRD domain AM338_10900 PF12832 MFS_1 like family AM338_10905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_10905 PF03466 LysR substrate binding domain AM338_10910 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM338_10910 PF00355 Rieske [2Fe-2S] domain AM338_10915 PF00866 Ring hydroxylating beta subunit AM338_10920 PF00355 Rieske [2Fe-2S] domain AM338_10925 PF00106 short chain dehydrogenase AM338_10930 PF14759 Reductase C-terminal AM338_10930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_10935 PF07681 DoxX AM338_10940 PF01263 Aldose 1-epimerase AM338_10945 PF08240 Alcohol dehydrogenase GroES-like domain AM338_10945 PF00107 Zinc-binding dehydrogenase AM338_10950 PF02653 Branched-chain amino acid transport system / permease component AM338_10955 PF00005 ABC transporter AM338_10960 PF13407 Periplasmic binding protein domain AM338_10965 PF13181 Tetratricopeptide repeat AM338_10965 PF17128 Domain of unknown function (DUF5107) AM338_10970 PF00480 ROK family AM338_10975 PF00464 Serine hydroxymethyltransferase AM338_10980 PF00175 Oxidoreductase NAD-binding domain AM338_10980 PF00970 Oxidoreductase FAD-binding domain AM338_10980 PF00042 Globin AM338_10985 PF00543 Nitrogen regulatory protein P-II AM338_10990 PF00072 Response regulator receiver domain AM338_10990 PF00158 Sigma-54 interaction domain AM338_10995 PF13942 YfhG lipoprotein AM338_11000 PF00512 His Kinase A (phospho-acceptor) domain AM338_11000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_11005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM338_11005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AM338_11005 PF02769 AIR synthase related protein, C-terminal domain AM338_11015 PF01464 Transglycosylase SLT domain AM338_11015 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_11020 PF14437 MafB19-like deaminase AM338_11030 PF01380 SIS domain AM338_11030 PF01418 Helix-turn-helix domain, rpiR family AM338_11035 PF12838 4Fe-4S dicluster domain AM338_11055 PF01648 4'-phosphopantetheinyl transferase superfamily AM338_11060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM338_11065 PF02565 Recombination protein O C terminal AM338_11065 PF11967 Recombination protein O N terminal AM338_11070 PF07650 KH domain AM338_11070 PF01926 50S ribosome-binding GTPase AM338_11075 PF00035 Double-stranded RNA binding motif AM338_11075 PF14622 Ribonuclease-III-like AM338_11085 PF10502 Signal peptidase, peptidase S26 AM338_11090 PF00679 Elongation factor G C-terminus AM338_11090 PF03144 Elongation factor Tu domain 2 AM338_11090 PF00009 Elongation factor Tu GTP binding domain AM338_11090 PF06421 GTP-binding protein LepA C-terminus AM338_11100 PF03888 MucB/RseB N-terminal domain AM338_11100 PF17188 MucB/RseB C-terminal domain AM338_11105 PF03872 Anti sigma-E protein RseA, N-terminal domain AM338_11105 PF03873 Anti sigma-E protein RseA, C-terminal domain AM338_11110 PF08281 Sigma-70, region 4 AM338_11110 PF04542 Sigma-70 region 2 AM338_11115 PF00890 FAD binding domain AM338_11115 PF02910 Fumarate reductase flavoprotein C-term AM338_11120 PF05175 Methyltransferase small domain AM338_11125 PF00270 DEAD/DEAH box helicase AM338_11125 PF00271 Helicase conserved C-terminal domain AM338_11130 PF03466 LysR substrate binding domain AM338_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_11135 PF01810 LysE type translocator AM338_11140 PF01228 Glycine radical AM338_11145 PF03167 Uracil DNA glycosylase superfamily AM338_11150 PF00588 SpoU rRNA Methylase family AM338_11150 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM338_11160 PF00085 Thioredoxin AM338_11170 PF13380 CoA binding domain AM338_11170 PF13607 Succinyl-CoA ligase like flavodoxin domain AM338_11170 PF00583 Acetyltransferase (GNAT) family AM338_11175 PF13091 PLD-like domain AM338_11180 PF10043 Predicted periplasmic lipoprotein (DUF2279) AM338_11185 PF00083 Sugar (and other) transporter AM338_11215 PF10431 C-terminal, D2-small domain, of ClpB protein AM338_11215 PF02861 Clp amino terminal domain, pathogenicity island component AM338_11215 PF17871 AAA lid domain AM338_11215 PF07724 AAA domain (Cdc48 subfamily) AM338_11215 PF00004 ATPase family associated with various cellular activities (AAA) AM338_11225 PF01479 S4 domain AM338_11225 PF00849 RNA pseudouridylate synthase AM338_11230 PF13525 Outer membrane lipoprotein AM338_11240 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM338_11245 PF00800 Prephenate dehydratase AM338_11245 PF01817 Chorismate mutase type II AM338_11250 PF02153 Prephenate dehydrogenase AM338_11250 PF01817 Chorismate mutase type II AM338_11255 PF00793 DAHP synthetase I family AM338_11260 PF10973 Protein of unknown function (DUF2799) AM338_11265 PF13689 YfiR/HmsC-like AM338_11270 PF17152 Periplasmic sensor domain AM338_11270 PF00990 Diguanylate cyclase, GGDEF domain AM338_11275 PF00691 OmpA family AM338_11280 PF01245 Ribosomal protein L19 AM338_11285 PF01746 tRNA (Guanine-1)-methyltransferase AM338_11290 PF05239 PRC-barrel domain AM338_11290 PF01782 RimM N-terminal domain AM338_11295 PF00886 Ribosomal protein S16 AM338_11300 PF00448 SRP54-type protein, GTPase domain AM338_11300 PF02881 SRP54-type protein, helical bundle domain AM338_11300 PF02978 Signal peptide binding domain AM338_11305 PF01578 Cytochrome C assembly protein AM338_11310 PF00571 CBS domain AM338_11310 PF03471 Transporter associated domain AM338_11310 PF01595 Cyclin M transmembrane N-terminal domain AM338_11315 PF01025 GrpE AM338_11325 PF01513 ATP-NAD kinase AM338_11330 PF02463 RecF/RecN/SMC N terminal domain AM338_11335 PF04355 SmpA / OmlA family AM338_11340 PF03658 RnfH family Ubiquitin AM338_11345 PF03364 Polyketide cyclase / dehydrase and lipid transport AM338_11350 PF01668 SmpB protein AM338_11360 PF03797 Autotransporter beta-domain AM338_11360 PF03212 Pertactin AM338_11360 PF16168 Adhesin of bacterial autotransporter system, probable stalk AM338_11375 PF17621 Family of unknown function (DUF5508) AM338_11380 PF17612 Family of unknown function (DUF5507) AM338_11390 PF00128 Alpha amylase, catalytic domain AM338_11405 PF08943 CsiD AM338_11410 PF01266 FAD dependent oxidoreductase AM338_11415 PF00171 Aldehyde dehydrogenase family AM338_11420 PF00202 Aminotransferase class-III AM338_11425 PF00324 Amino acid permease AM338_11430 PF00392 Bacterial regulatory proteins, gntR family AM338_11430 PF07729 FCD domain AM338_11435 PF04972 BON domain AM338_11435 PF01476 LysM domain AM338_11440 PF01679 Proteolipid membrane potential modulator AM338_11445 PF01022 Bacterial regulatory protein, arsR family AM338_11450 PF11127 Protein of unknown function (DUF2892) AM338_11450 PF00581 Rhodanese-like domain AM338_11455 PF00816 H-NS histone family AM338_11460 PF06610 L-alanine exporter AM338_11465 PF09400 Protein of unknown function (DUF2002) AM338_11470 PF05957 Bacterial protein of unknown function (DUF883) AM338_11475 PF00462 Glutaredoxin AM338_11480 PF07972 NrdI Flavodoxin like AM338_11485 PF08343 Ribonucleotide reductase N-terminal AM338_11485 PF02867 Ribonucleotide reductase, barrel domain AM338_11485 PF00317 Ribonucleotide reductase, all-alpha domain AM338_11490 PF00268 Ribonucleotide reductase, small chain AM338_11500 PF00005 ABC transporter AM338_11500 PF00571 CBS domain AM338_11505 PF00528 Binding-protein-dependent transport system inner membrane component AM338_11510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM338_11515 PF07690 Major Facilitator Superfamily AM338_11520 PF03591 AzlC protein AM338_11525 PF05437 Branched-chain amino acid transport protein (AzlD) AM338_11530 PF01047 MarR family AM338_11535 PF00529 HlyD membrane-fusion protein of T1SS AM338_11535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_11540 PF07690 Major Facilitator Superfamily AM338_11545 PF02664 S-Ribosylhomocysteinase (LuxS) AM338_11550 PF04262 Glutamate-cysteine ligase AM338_11555 PF09335 SNARE associated Golgi protein AM338_11560 PF13419 Haloacid dehalogenase-like hydrolase AM338_11590 PF02599 Global regulator protein family AM338_11595 PF01411 tRNA synthetases class II (A) AM338_11595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM338_11595 PF02272 DHHA1 domain AM338_11600 PF02631 RecX family AM338_11605 PF00154 recA bacterial DNA recombination protein AM338_11610 PF02464 Competence-damaged protein AM338_11615 PF13406 Transglycosylase SLT domain AM338_11620 PF03608 PTS system enzyme II sorbitol-specific factor AM338_11625 PF03612 Sorbitol phosphotransferase enzyme II N-terminus AM338_11625 PF07663 Sorbitol phosphotransferase enzyme II C-terminus AM338_11630 PF03829 PTS system glucitol/sorbitol-specific IIA component AM338_11635 PF00106 short chain dehydrogenase AM338_11640 PF06923 Glucitol operon activator protein (GutM) AM338_11645 PF00455 DeoR C terminal sensor domain AM338_11645 PF08220 DeoR-like helix-turn-helix domain AM338_11650 PF00571 CBS domain AM338_11650 PF01380 SIS domain AM338_11655 PF00158 Sigma-54 interaction domain AM338_11655 PF01590 GAF domain AM338_11660 PF00301 Rubredoxin AM338_11660 PF00258 Flavodoxin AM338_11660 PF00753 Metallo-beta-lactamase superfamily AM338_11665 PF18113 Rubredoxin binding C-terminal domain AM338_11665 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_11670 PF07503 HypF finger AM338_11670 PF01300 Telomere recombination AM338_11670 PF17788 HypF Kae1-like domain AM338_11670 PF00708 Acylphosphatase AM338_11675 PF13247 4Fe-4S dicluster domain AM338_11675 PF12800 4Fe-4S binding domain AM338_11680 PF00356 Bacterial regulatory proteins, lacI family AM338_11685 PF02378 Phosphotransferase system, EIIC AM338_11685 PF00367 phosphotransferase system, EIIB AM338_11690 PF00232 Glycosyl hydrolase family 1 AM338_11695 PF01750 Hydrogenase maturation protease AM338_11700 PF07450 Formate hydrogenlyase maturation protein HycH AM338_11705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM338_11710 PF12838 4Fe-4S dicluster domain AM338_11715 PF00374 Nickel-dependent hydrogenase AM338_11715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM338_11715 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM338_11720 PF00146 NADH dehydrogenase AM338_11725 PF00361 Proton-conducting membrane transporter AM338_11730 PF13247 4Fe-4S dicluster domain AM338_11740 PF11046 Transcriptional repressor of hyc and hyp operons AM338_11745 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AM338_11750 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM338_11755 PF01455 HupF/HypC family AM338_11760 PF01924 Hydrogenase formation hypA family AM338_11765 PF00586 AIR synthase related protein, N-terminal domain AM338_11765 PF02769 AIR synthase related protein, C-terminal domain AM338_11770 PF01590 GAF domain AM338_11770 PF00158 Sigma-54 interaction domain AM338_11775 PF11756 Nitrous oxide-stimulated promoter AM338_11780 PF05190 MutS family domain IV AM338_11780 PF01624 MutS domain I AM338_11780 PF05192 MutS domain III AM338_11780 PF05188 MutS domain II AM338_11780 PF00488 MutS domain V AM338_11785 PF00149 Calcineurin-like phosphoesterase AM338_11790 PF08220 DeoR-like helix-turn-helix domain AM338_11790 PF00455 DeoR C terminal sensor domain AM338_11795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM338_11795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM338_11800 PF07005 Sugar-binding N-terminal domain AM338_11800 PF17042 Nucleotide-binding C-terminal domain AM338_11805 PF00596 Class II Aldolase and Adducin N-terminal domain AM338_11810 PF01261 Xylose isomerase-like TIM barrel AM338_11815 PF02447 GntP family permease AM338_11820 PF04545 Sigma-70, region 4 AM338_11820 PF00140 Sigma-70 factor, region 1.2 AM338_11820 PF04542 Sigma-70 region 2 AM338_11820 PF04539 Sigma-70 region 3 AM338_11825 PF01551 Peptidase family M23 AM338_11825 PF01476 LysM domain AM338_11835 PF01975 Survival protein SurE AM338_11840 PF01142 tRNA pseudouridine synthase D (TruD) AM338_11845 PF02542 YgbB family AM338_11850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM338_11855 PF04977 Septum formation initiator AM338_11860 PF12084 Protein of unknown function (DUF3561) AM338_11870 PF00009 Elongation factor Tu GTP binding domain AM338_11875 PF01507 Phosphoadenosine phosphosulfate reductase family AM338_11880 PF04389 Peptidase family M28 AM338_11885 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) AM338_11890 PF01867 CRISPR associated protein Cas1 AM338_11895 PF08798 CRISPR associated protein AM338_11900 PF09704 CRISPR-associated protein (Cas_Cas5) AM338_11905 PF09344 CT1975-like protein AM338_11910 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) AM338_11915 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) AM338_11920 PF00270 DEAD/DEAH box helicase AM338_11920 PF18019 HD domain AM338_11920 PF00271 Helicase conserved C-terminal domain AM338_11930 PF01507 Phosphoadenosine phosphosulfate reductase family AM338_11935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM338_11935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM338_11940 PF00258 Flavodoxin AM338_11940 PF00667 FAD binding domain AM338_11940 PF00175 Oxidoreductase NAD-binding domain AM338_11945 PF01242 6-pyruvoyl tetrahydropterin synthase AM338_11950 PF01266 FAD dependent oxidoreductase AM338_11960 PF04309 Glycerol-3-phosphate responsive antiterminator AM338_11965 PF00766 Electron transfer flavoprotein FAD-binding domain AM338_11965 PF01012 Electron transfer flavoprotein domain AM338_11970 PF01012 Electron transfer flavoprotein domain AM338_11975 PF00083 Sugar (and other) transporter AM338_11980 PF01565 FAD binding domain AM338_11980 PF02913 FAD linked oxidases, C-terminal domain AM338_11990 PF07690 Major Facilitator Superfamily AM338_11995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_11995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_12000 PF04055 Radical SAM superfamily AM338_12010 PF04536 TPM domain AM338_12015 PF03952 Enolase, N-terminal domain AM338_12015 PF00113 Enolase, C-terminal TIM barrel domain AM338_12020 PF06418 CTP synthase N-terminus AM338_12020 PF00117 Glutamine amidotransferase class-I AM338_12025 PF03819 MazG nucleotide pyrophosphohydrolase domain AM338_12030 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AM338_12035 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AM338_12040 PF13291 ACT domain AM338_12040 PF04607 Region found in RelA / SpoT proteins AM338_12040 PF02824 TGS domain AM338_12045 PF01938 TRAM domain AM338_12045 PF05958 tRNA (Uracil-5-)-methyltransferase AM338_12050 PF00672 HAMP domain AM338_12050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_12050 PF01627 Hpt domain AM338_12050 PF00072 Response regulator receiver domain AM338_12050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM338_12050 PF00512 His Kinase A (phospho-acceptor) domain AM338_12055 PF13378 Enolase C-terminal domain-like AM338_12060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM338_12060 PF13378 Enolase C-terminal domain-like AM338_12065 PF07690 Major Facilitator Superfamily AM338_12070 PF00258 Flavodoxin AM338_12075 PF00849 RNA pseudouridylate synthase AM338_12080 PF04287 tRNA pseudouridine synthase C AM338_12085 PF07348 Syd protein (SUKH-2) AM338_12090 PF14489 QueF-like protein AM338_12090 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM338_12095 PF03641 Possible lysine decarboxylase AM338_12095 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AM338_12095 PF11892 Domain of unknown function (DUF3412) AM338_12105 PF03315 Serine dehydratase beta chain AM338_12105 PF03313 Serine dehydratase alpha chain AM338_12110 PF01367 5'-3' exonuclease, C-terminal SAM fold AM338_12110 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM338_12115 PF00465 Iron-containing alcohol dehydrogenase AM338_12120 PF00596 Class II Aldolase and Adducin N-terminal domain AM338_12125 PF07690 Major Facilitator Superfamily AM338_12130 PF02952 L-fucose isomerase, C-terminal domain AM338_12130 PF07882 L-fucose isomerase, second N-terminal domain AM338_12130 PF07881 L-fucose isomerase, first N-terminal domain AM338_12135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_12135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_12140 PF05025 RbsD / FucU transport protein family AM338_12145 PF08220 DeoR-like helix-turn-helix domain AM338_12145 PF00455 DeoR C terminal sensor domain AM338_12150 PF18125 RlmM ferredoxin-like domain AM338_12150 PF01728 FtsJ-like methyltransferase AM338_12155 PF04241 Protein of unknown function (DUF423) AM338_12160 PF03466 LysR substrate binding domain AM338_12160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_12165 PF06004 Bacterial protein of unknown function (DUF903) AM338_12170 PF00266 Aminotransferase class-V AM338_12175 PF02657 Fe-S metabolism associated domain AM338_12180 PF00899 ThiF family AM338_12185 PF03562 MltA specific insert domain AM338_12185 PF06725 3D domain AM338_12210 PF01520 N-acetylmuramoyl-L-alanine amidase AM338_12210 PF11741 AMIN domain AM338_12215 PF00696 Amino acid kinase family AM338_12215 PF00583 Acetyltransferase (GNAT) family AM338_12220 PF13538 UvrD-like helicase C-terminal domain AM338_12225 PF12705 PD-(D/E)XK nuclease superfamily AM338_12225 PF13361 UvrD-like helicase C-terminal domain AM338_12225 PF00580 UvrD/REP helicase N-terminal domain AM338_12230 PF00675 Insulinase (Peptidase family M16) AM338_12230 PF16187 Middle or third domain of peptidase_M16 AM338_12230 PF05193 Peptidase M16 inactive domain AM338_12235 PF17946 RecC C-terminal domain AM338_12240 PF07963 Prokaryotic N-terminal methylation motif AM338_12240 PF12528 Type II secretion prepilin peptidase dependent protein C AM338_12245 PF10713 Protein of unknown function (DUF2509) AM338_12250 PF07963 Prokaryotic N-terminal methylation motif AM338_12255 PF07963 Prokaryotic N-terminal methylation motif AM338_12260 PF00303 Thymidylate synthase AM338_12265 PF01790 Prolipoprotein diacylglyceryl transferase AM338_12270 PF05524 PEP-utilising enzyme, N-terminal AM338_12270 PF02896 PEP-utilising enzyme, TIM barrel domain AM338_12270 PF00391 PEP-utilising enzyme, mobile domain AM338_12270 PF01590 GAF domain AM338_12275 PF00293 NUDIX domain AM338_12280 PF02976 DNA mismatch repair enzyme MutH AM338_12285 PF03741 Integral membrane protein TerC family AM338_12290 PF06004 Bacterial protein of unknown function (DUF903) AM338_12295 PF00248 Aldo/keto reductase family AM338_12300 PF07690 Major Facilitator Superfamily AM338_12305 PF00501 AMP-binding enzyme AM338_12305 PF01553 Acyltransferase AM338_12310 PF00356 Bacterial regulatory proteins, lacI family AM338_12315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM338_12315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM338_12320 PF03466 LysR substrate binding domain AM338_12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_12325 PF01177 Asp/Glu/Hydantoin racemase AM338_12330 PF00083 Sugar (and other) transporter AM338_12340 PF04962 KduI/IolB family AM338_12345 PF00108 Thiolase, N-terminal domain AM338_12345 PF02803 Thiolase, C-terminal domain AM338_12350 PF03222 Tryptophan/tyrosine permease family AM338_12355 PF00196 Bacterial regulatory proteins, luxR family AM338_12360 PF00486 Transcriptional regulatory protein, C terminal AM338_12390 PF07720 Tetratricopeptide repeat AM338_12400 PF00486 Transcriptional regulatory protein, C terminal AM338_12420 PF00196 Bacterial regulatory proteins, luxR family AM338_12420 PF00072 Response regulator receiver domain AM338_12425 PF00072 Response regulator receiver domain AM338_12425 PF00196 Bacterial regulatory proteins, luxR family AM338_12440 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) AM338_12445 PF01514 Secretory protein of YscJ/FliF family AM338_12455 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AM338_12460 PF09480 Type III secretion system protein PrgH-EprH (PrgH) AM338_12470 PF13737 Transposase DDE domain AM338_12490 PF01312 FlhB HrpN YscU SpaS Family AM338_12495 PF01312 FlhB HrpN YscU SpaS Family AM338_12500 PF01311 Bacterial export proteins, family 1 AM338_12505 PF01313 Bacterial export proteins, family 3 AM338_12510 PF00813 FliP family AM338_12525 PF01609 Transposase DDE domain AM338_12560 PF02899 Phage integrase, N-terminal SAM-like domain AM338_12560 PF00589 Phage integrase family AM338_12570 PF01476 LysM domain AM338_12570 PF01551 Peptidase family M23 AM338_12580 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM338_12580 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM338_12585 PF00941 FAD binding domain in molybdopterin dehydrogenase AM338_12585 PF03450 CO dehydrogenase flavoprotein C-terminal domain AM338_12590 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_12590 PF01799 [2Fe-2S] binding domain AM338_12600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM338_12600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM338_12605 PF00291 Pyridoxal-phosphate dependent enzyme AM338_12610 PF07687 Peptidase dimerisation domain AM338_12610 PF01546 Peptidase family M20/M25/M40 AM338_12615 PF01979 Amidohydrolase family AM338_12620 PF00696 Amino acid kinase family AM338_12625 PF02625 XdhC and CoxI family AM338_12625 PF13478 XdhC Rossmann domain AM338_12635 PF12804 MobA-like NTP transferase domain AM338_12640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_12640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM338_12645 PF01979 Amidohydrolase family AM338_12650 PF00941 FAD binding domain in molybdopterin dehydrogenase AM338_12655 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM338_12655 PF01799 [2Fe-2S] binding domain AM338_12655 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM338_12660 PF00860 Permease family AM338_12665 PF01979 Amidohydrolase family AM338_12670 PF00860 Permease family AM338_12675 PF13247 4Fe-4S dicluster domain AM338_12690 PF00860 Permease family AM338_12700 PF00293 NUDIX domain AM338_12705 PF00152 tRNA synthetases class II (D, K and N) AM338_12705 PF01336 OB-fold nucleic acid binding domain AM338_12715 PF17768 RecJ OB domain AM338_12715 PF01368 DHH family AM338_12715 PF02272 DHHA1 domain AM338_12720 PF10411 Disulfide bond isomerase protein N-terminus AM338_12720 PF13098 Thioredoxin-like domain AM338_12725 PF02899 Phage integrase, N-terminal SAM-like domain AM338_12725 PF00589 Phage integrase family AM338_12730 PF00258 Flavodoxin AM338_12735 PF07254 Membrane-bound toxin component of toxin-antitoxin system AM338_12740 PF03937 Flavinator of succinate dehydrogenase AM338_12745 PF01571 Aminomethyltransferase folate-binding domain AM338_12750 PF03006 Haemolysin-III related AM338_12760 PF00232 Glycosyl hydrolase family 1 AM338_12770 PF02347 Glycine cleavage system P-protein AM338_12775 PF01597 Glycine cleavage H-protein AM338_12780 PF08669 Glycine cleavage T-protein C-terminal barrel domain AM338_12780 PF01571 Aminomethyltransferase folate-binding domain AM338_12785 PF01494 FAD binding domain AM338_12790 PF01494 FAD binding domain AM338_12795 PF05195 Aminopeptidase P, N-terminal domain AM338_12795 PF00557 Metallopeptidase family M24 AM338_12800 PF03695 Uncharacterised protein family (UPF0149) AM338_12810 PF05164 Cell division protein ZapA AM338_12820 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM338_12835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM338_12835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM338_12835 PF01842 ACT domain AM338_12840 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM338_12845 PF03466 LysR substrate binding domain AM338_12850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_12850 PF03466 LysR substrate binding domain AM338_12860 PF01642 Methylmalonyl-CoA mutase AM338_12860 PF02310 B12 binding domain AM338_12870 PF00378 Enoyl-CoA hydratase/isomerase AM338_12875 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AM338_12875 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AM338_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_12880 PF03466 LysR substrate binding domain AM338_12890 PF01810 LysE type translocator AM338_12895 PF00924 Mechanosensitive ion channel AM338_12895 PF05552 Conserved TM helix AM338_12900 PF01116 Fructose-bisphosphate aldolase class-II AM338_12905 PF00162 Phosphoglycerate kinase AM338_12910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM338_12910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM338_12925 PF05068 Mannitol repressor AM338_12930 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM338_12935 PF08240 Alcohol dehydrogenase GroES-like domain AM338_12935 PF00107 Zinc-binding dehydrogenase AM338_12940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_12940 PF02378 Phosphotransferase system, EIIC AM338_12945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_12950 PF02779 Transketolase, pyrimidine binding domain AM338_12950 PF00456 Transketolase, thiamine diphosphate binding domain AM338_12950 PF02780 Transketolase, C-terminal domain AM338_12955 PF01435 Peptidase family M48 AM338_12960 PF00491 Arginase family AM338_12965 PF17944 Arginine decarboxylase C-terminal helical extension AM338_12965 PF17810 Arginine decarboxylase helical bundle domain AM338_12965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM338_12970 PF11036 Virulence promoting factor AM338_12975 PF17430 Uncharacterized YqgC-like AM338_12985 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM338_12985 PF02772 S-adenosylmethionine synthetase, central domain AM338_12985 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM338_12990 PF00083 Sugar (and other) transporter AM338_12995 PF17283 SprT-like zinc ribbon domain AM338_12995 PF10263 SprT-like family AM338_13000 PF04231 Endonuclease I AM338_13005 PF04452 RNA methyltransferase AM338_13010 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM338_13010 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM338_13015 PF02622 Uncharacterized ACR, COG1678 AM338_13020 PF03652 Holliday junction resolvase AM338_13025 PF00437 Type II/IV secretion system protein AM338_13030 PF01168 Alanine racemase, N-terminal domain AM338_13035 PF02325 YGGT family AM338_13040 PF02594 Uncharacterised ACR, YggU family COG1872 AM338_13045 PF01725 Ham1 family AM338_13050 PF04055 Radical SAM superfamily AM338_13050 PF06969 HemN C-terminal domain AM338_13055 PF06717 Protein of unknown function (DUF1202) AM338_13060 PF17763 Glutaminase/Asparaginase C-terminal domain AM338_13060 PF00710 Asparaginase, N-terminal AM338_13065 PF11101 Protein of unknown function (DUF2884) AM338_13070 PF04320 Protein with unknown function (DUF469) AM338_13075 PF02390 Putative methyltransferase AM338_13085 PF00730 HhH-GPD superfamily base excision DNA repair protein AM338_13085 PF14815 NUDIX domain AM338_13085 PF10576 Iron-sulfur binding domain of endonuclease III AM338_13085 PF00633 Helix-hairpin-helix motif AM338_13090 PF04362 Bacterial Fe(2+) trafficking AM338_13095 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AM338_13095 PF01464 Transglycosylase SLT domain AM338_13100 PF03825 Nucleoside H+ symporter AM338_13105 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM338_13105 PF01276 Orn/Lys/Arg decarboxylase, major domain AM338_13105 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM338_13115 PF04474 Protein of unknown function (DUF554) AM338_13150 PF05717 IS66 Orf2 like protein AM338_13155 PF03050 Transposase IS66 family AM338_13155 PF13817 IS66 C-terminal element AM338_13155 PF13007 Transposase C of IS166 homeodomain AM338_13155 PF13005 zinc-finger binding domain of transposase IS66 AM338_13170 PF01047 MarR family AM338_13185 PF13520 Amino acid permease AM338_13190 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM338_13190 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM338_13190 PF01276 Orn/Lys/Arg decarboxylase, major domain AM338_13195 PF13520 Amino acid permease AM338_13210 PF08240 Alcohol dehydrogenase GroES-like domain AM338_13210 PF00107 Zinc-binding dehydrogenase AM338_13275 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM338_13275 PF17287 POTRA domain AM338_13275 PF08479 POTRA domain, ShlB-type AM338_13295 PF00465 Iron-containing alcohol dehydrogenase AM338_13300 PF06130 Phosphate propanoyltransferase AM338_13315 PF03319 Ethanolamine utilisation protein EutN/carboxysome AM338_13320 PF03928 Haem-degrading AM338_13325 PF00871 Acetokinase family AM338_13330 PF00936 BMC domain AM338_13335 PF00936 BMC domain AM338_13340 PF00171 Aldehyde dehydrogenase family AM338_13350 PF01965 DJ-1/PfpI family AM338_13360 PF13187 4Fe-4S dicluster domain AM338_13360 PF04055 Radical SAM superfamily AM338_13380 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_13385 PF06580 Histidine kinase AM338_13385 PF00672 HAMP domain AM338_13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_13385 PF02743 Cache domain AM338_13390 PF12833 Helix-turn-helix domain AM338_13395 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM338_13395 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM338_13395 PF02772 S-adenosylmethionine synthetase, central domain AM338_13400 PF00936 BMC domain AM338_13405 PF12833 Helix-turn-helix domain AM338_13415 PF00440 Bacterial regulatory proteins, tetR family AM338_13415 PF08361 MAATS-type transcriptional repressor, C-terminal region AM338_13460 PF01926 50S ribosome-binding GTPase AM338_13465 PF13280 WYL domain AM338_13465 PF08220 DeoR-like helix-turn-helix domain AM338_13475 PF06006 Bacterial protein of unknown function (DUF905) AM338_13480 PF06067 Domain of unknown function (DUF932) AM338_13485 PF03230 Antirestriction protein AM338_13490 PF04002 RadC-like JAB domain AM338_13495 PF06174 Protein of unknown function (DUF987) AM338_13500 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A AM338_13505 PF06755 CbtA_toxin of type IV toxin-antitoxin system AM338_13525 PF04612 Type II secretion system (T2SS), protein M AM338_13530 PF12693 GspL periplasmic domain AM338_13535 PF03934 Type II secretion system (T2SS), protein K AM338_13540 PF07963 Prokaryotic N-terminal methylation motif AM338_13540 PF11612 Type II secretion system (T2SS), protein J AM338_13545 PF02501 Type II secretion system (T2SS), protein I AM338_13545 PF07963 Prokaryotic N-terminal methylation motif AM338_13550 PF07963 Prokaryotic N-terminal methylation motif AM338_13555 PF08334 Type II secretion system (T2SS), protein G AM338_13555 PF07963 Prokaryotic N-terminal methylation motif AM338_13560 PF00482 Type II secretion system (T2SS), protein F AM338_13570 PF03958 Bacterial type II/III secretion system short domain AM338_13570 PF00263 Bacterial type II and III secretion system protein AM338_13575 PF11356 Type II secretion system protein C AM338_13580 PF16549 Type II secretion system (T2SS) pilotin, S protein AM338_13585 PF01478 Type IV leader peptidase family AM338_13585 PF06750 Bacterial Peptidase A24 N-terminal domain AM338_13590 PF17291 N-terminal domain of M60-like peptidases AM338_13590 PF13402 Peptidase M60, enhancin and enhancin-like AM338_13590 PF13322 Domain of unknown function (DUF4092) AM338_13600 PF02652 L-lactate permease AM338_13605 PF01274 Malate synthase AM338_13610 PF03928 Haem-degrading AM338_13615 PF02754 Cysteine-rich domain AM338_13615 PF13183 4Fe-4S dicluster domain AM338_13620 PF01565 FAD binding domain AM338_13625 PF02913 FAD linked oxidases, C-terminal domain AM338_13625 PF01565 FAD binding domain AM338_13630 PF07729 FCD domain AM338_13630 PF00392 Bacterial regulatory proteins, gntR family AM338_13640 PF14535 AMP-binding enzyme C-terminal domain AM338_13640 PF00501 AMP-binding enzyme AM338_13650 PF00550 Phosphopantetheine attachment site AM338_13655 PF00155 Aminotransferase class I and II AM338_13665 PF03739 Lipopolysaccharide export system permease LptF/LptG AM338_13670 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AM338_13680 PF01943 Polysaccharide biosynthesis protein AM338_13700 PF01384 Phosphate transporter family AM338_13705 PF03738 Glutathionylspermidine synthase preATP-grasp AM338_13705 PF05257 CHAP domain AM338_13710 PF02798 Glutathione S-transferase, N-terminal domain AM338_13715 PF01455 HupF/HypC family AM338_13720 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AM338_13725 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE AM338_13730 PF01750 Hydrogenase maturation protease AM338_13735 PF00374 Nickel-dependent hydrogenase AM338_13740 PF03916 Polysulphide reductase, NrfD AM338_13745 PF13247 4Fe-4S dicluster domain AM338_13750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM338_13750 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AM338_13760 PF11115 Protein of unknown function (DUF2623) AM338_13775 PF00248 Aldo/keto reductase family AM338_13780 PF03350 Uncharacterized protein family, UPF0114 AM338_13790 PF02472 Biopolymer transport protein ExbD/TolR AM338_13795 PF01618 MotA/TolQ/ExbB proton channel family AM338_13805 PF01053 Cys/Met metabolism PLP-dependent enzyme AM338_13810 PF09335 SNARE associated Golgi protein AM338_13815 PF12833 Helix-turn-helix domain AM338_13815 PF06719 AraC-type transcriptional regulator N-terminus AM338_13820 PF00465 Iron-containing alcohol dehydrogenase AM338_13825 PF00248 Aldo/keto reductase family AM338_13830 PF12883 Protein of unknown function (DUF3828) AM338_13835 PF04728 Lipoprotein leucine-zipper AM338_13840 PF08497 Radical SAM N-terminal AM338_13840 PF04055 Radical SAM superfamily AM338_13840 PF11842 Domain of unknown function (DUF3362) AM338_13845 PF07731 Multicopper oxidase AM338_13845 PF07732 Multicopper oxidase AM338_13845 PF00394 Multicopper oxidase AM338_13850 PF01553 Acyltransferase AM338_13855 PF00521 DNA gyrase/topoisomerase IV, subunit A AM338_13855 PF03989 DNA gyrase C-terminal domain, beta-propeller AM338_13860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_13865 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AM338_13870 PF15723 Motility quorum-sensing regulator, toxin of MqsA AM338_13875 PF06445 GyrI-like small molecule binding domain AM338_13880 PF04076 Bacterial OB fold (BOF) protein AM338_13885 PF00072 Response regulator receiver domain AM338_13885 PF00486 Transcriptional regulatory protein, C terminal AM338_13890 PF08521 Two-component sensor kinase N-terminal AM338_13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_13890 PF00512 His Kinase A (phospho-acceptor) domain AM338_13895 PF10840 Protein of unknown function (DUF2645) AM338_13905 PF02525 Flavodoxin-like fold AM338_13910 PF03992 Antibiotic biosynthesis monooxygenase AM338_13915 PF00986 DNA gyrase B subunit, carboxyl terminus AM338_13915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_13915 PF00204 DNA gyrase B AM338_13915 PF01751 Toprim domain AM338_13920 PF05728 Uncharacterised protein family (UPF0227) AM338_13925 PF00149 Calcineurin-like phosphoesterase AM338_13930 PF06853 Protein of unknown function (DUF1249) AM338_13935 PF00293 NUDIX domain AM338_13940 PF02321 Outer membrane efflux protein AM338_13950 PF06693 Protein of unknown function (DUF1190) AM338_13955 PF03738 Glutathionylspermidine synthase preATP-grasp AM338_13960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM338_13965 PF02535 ZIP Zinc transporter AM338_13975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM338_13980 PF04380 Membrane fusogenic activity AM338_13985 PF00419 Fimbrial protein AM338_13990 PF13954 PapC N-terminal domain AM338_13990 PF13953 PapC C-terminal domain AM338_13990 PF00577 Outer membrane usher protein AM338_13995 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_13995 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_14005 PF08971 Glycogen synthesis protein AM338_14010 PF07290 Protein of unknown function (DUF1449) AM338_14015 PF15975 Flotillin AM338_14015 PF01145 SPFH domain / Band 7 family AM338_14025 PF01467 Cytidylyltransferase-like AM338_14025 PF00294 pfkB family carbohydrate kinase AM338_14030 PF03710 Glutamate-ammonia ligase adenylyltransferase AM338_14030 PF08335 GlnD PII-uridylyltransferase AM338_14035 PF01928 CYTH domain AM338_14045 PF08239 Bacterial SH3 domain AM338_14050 PF12627 Probable RNA and SrmB- binding site of polymerase A AM338_14050 PF01743 Poly A polymerase head domain AM338_14050 PF01966 HD domain AM338_14055 PF02673 Bacitracin resistance protein BacA AM338_14060 PF02152 Dihydroneopterin aldolase AM338_14065 PF02660 Glycerol-3-phosphate acyltransferase AM338_14070 PF03466 LysR substrate binding domain AM338_14070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_14080 PF05681 Fumarate hydratase (Fumerase) AM338_14085 PF05683 Fumarase C-terminus AM338_14090 PF00939 Sodium:sulfate symporter transmembrane region AM338_14095 PF00814 Glycoprotease family AM338_14105 PF01165 Ribosomal protein S21 AM338_14110 PF10410 DnaB-helicase binding domain of primase AM338_14110 PF08278 DNA primase DnaG DnaB-binding AM338_14110 PF01807 CHC2 zinc finger AM338_14110 PF08275 DNA primase catalytic core, N-terminal domain AM338_14120 PF04542 Sigma-70 region 2 AM338_14120 PF04546 Sigma-70, non-essential region AM338_14120 PF00140 Sigma-70 factor, region 1.2 AM338_14120 PF03979 Sigma-70 factor, region 1.1 AM338_14120 PF04545 Sigma-70, region 4 AM338_14120 PF04539 Sigma-70 region 3 AM338_14125 PF03167 Uracil DNA glycosylase superfamily AM338_14135 PF08021 Siderophore-interacting FAD-binding domain AM338_14135 PF04954 Siderophore-interacting protein AM338_14145 PF03551 Transcriptional regulator PadR-like family AM338_14150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM338_14150 PF08447 PAS fold AM338_14160 PF00202 Aminotransferase class-III AM338_14165 PF01588 Putative tRNA binding domain AM338_14175 PF00356 Bacterial regulatory proteins, lacI family AM338_14180 PF00703 Glycosyl hydrolases family 2 AM338_14180 PF02929 Beta galactosidase small chain AM338_14180 PF16353 Domain of unknown function(DUF4981) AM338_14180 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM338_14180 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM338_14185 PF04074 YhcH/YjgK/YiaL AM338_14190 PF13520 Amino acid permease AM338_14200 PF01204 Trehalase AM338_14205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_14205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM338_14210 PF01381 Helix-turn-helix AM338_14215 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system AM338_14225 PF05175 Methyltransferase small domain AM338_14230 PF01863 Protein of unknown function DUF45 AM338_14235 PF02698 DUF218 domain AM338_14240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM338_14245 PF03741 Integral membrane protein TerC family AM338_14250 PF00375 Sodium:dicarboxylate symporter family AM338_14255 PF10688 Bacterial inner membrane protein AM338_14260 PF08666 SAF domain AM338_14260 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AM338_14265 PF02614 Glucuronate isomerase AM338_14270 PF07690 Major Facilitator Superfamily AM338_14275 PF07729 FCD domain AM338_14275 PF00392 Bacterial regulatory proteins, gntR family AM338_14280 PF09335 SNARE associated Golgi protein AM338_14285 PF13721 SecD export protein N-terminal TM region AM338_14290 PF06476 Protein of unknown function (DUF1090) AM338_14295 PF05957 Bacterial protein of unknown function (DUF883) AM338_14300 PF07332 Putative Actinobacterial Holin-X, holin superfamily III AM338_14305 PF13997 YqjK-like protein AM338_14310 PF07681 DoxX AM338_14315 PF13409 Glutathione S-transferase, N-terminal domain AM338_14320 PF05656 Protein of unknown function (DUF805) AM338_14340 PF05656 Protein of unknown function (DUF805) AM338_14350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_14350 PF03466 LysR substrate binding domain AM338_14355 PF17954 Quercetinase C-terminal cupin domain AM338_14355 PF02678 Pirin AM338_14365 PF03313 Serine dehydratase alpha chain AM338_14375 PF03315 Serine dehydratase beta chain AM338_14375 PF03313 Serine dehydratase alpha chain AM338_14380 PF01042 Endoribonuclease L-PSP AM338_14385 PF02901 Pyruvate formate lyase-like AM338_14385 PF01228 Glycine radical AM338_14390 PF00871 Acetokinase family AM338_14395 PF03222 Tryptophan/tyrosine permease family AM338_14400 PF00291 Pyridoxal-phosphate dependent enzyme AM338_14405 PF03466 LysR substrate binding domain AM338_14405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_14430 PF02595 Glycerate kinase family AM338_14435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM338_14435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM338_14440 PF03328 HpcH/HpaI aldolase/citrate lyase family AM338_14445 PF07690 Major Facilitator Superfamily AM338_14450 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AM338_14450 PF08666 SAF domain AM338_14455 PF15937 prlF antitoxin for toxin YhaV_toxin AM338_14460 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system AM338_14465 PF00455 DeoR C terminal sensor domain AM338_14465 PF08220 DeoR-like helix-turn-helix domain AM338_14475 PF08013 Tagatose 6 phosphate kinase AM338_14480 PF03830 PTS system sorbose subfamily IIB component AM338_14485 PF03609 PTS system sorbose-specific iic component AM338_14490 PF03613 PTS system mannose/fructose/sorbose family IID component AM338_14495 PF03610 PTS system fructose IIA component AM338_14500 PF01979 Amidohydrolase family AM338_14505 PF01380 SIS domain AM338_14510 PF01116 Fructose-bisphosphate aldolase class-II AM338_14515 PF03830 PTS system sorbose subfamily IIB component AM338_14530 PF03609 PTS system sorbose-specific iic component AM338_14535 PF03613 PTS system mannose/fructose/sorbose family IID component AM338_14540 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM338_14545 PF00419 Fimbrial protein AM338_14550 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_14550 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_14555 PF13953 PapC C-terminal domain AM338_14555 PF13954 PapC N-terminal domain AM338_14555 PF00577 Outer membrane usher protein AM338_14560 PF00419 Fimbrial protein AM338_14565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM338_14570 PF04348 LppC putative lipoprotein AM338_14575 PF02021 Uncharacterised protein family UPF0102 AM338_14580 PF13580 SIS domain AM338_14585 PF04972 BON domain AM338_14590 PF03773 Predicted permease AM338_14595 PF13460 NAD(P)H-binding AM338_14600 PF01965 DJ-1/PfpI family AM338_14610 PF01541 GIY-YIG catalytic domain AM338_14615 PF13508 Acetyltransferase (GNAT) domain AM338_14635 PF00296 Luciferase-like monooxygenase AM338_14640 PF03222 Tryptophan/tyrosine permease family AM338_14645 PF00271 Helicase conserved C-terminal domain AM338_14645 PF00270 DEAD/DEAH box helicase AM338_14645 PF03880 DbpA RNA binding domain AM338_14645 PF12343 Cold shock protein DEAD box A AM338_14655 PF13181 Tetratricopeptide repeat AM338_14655 PF07719 Tetratricopeptide repeat AM338_14660 PF00013 KH domain AM338_14660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM338_14660 PF00575 S1 RNA binding domain AM338_14660 PF01138 3' exoribonuclease family, domain 1 AM338_14660 PF03725 3' exoribonuclease family, domain 2 AM338_14665 PF00312 Ribosomal protein S15 AM338_14670 PF09157 Pseudouridine synthase II TruB, C-terminal AM338_14670 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM338_14670 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM338_14675 PF02033 Ribosome-binding factor A AM338_14680 PF04760 Translation initiation factor IF-2, N-terminal region AM338_14680 PF11987 Translation-initiation factor 2 AM338_14680 PF00009 Elongation factor Tu GTP binding domain AM338_14680 PF08364 Bacterial translation initiation factor IF-2 associated region AM338_14685 PF00575 S1 RNA binding domain AM338_14685 PF13184 NusA-like KH domain AM338_14685 PF08529 NusA N-terminal domain AM338_14690 PF17384 RimP C-terminal SH3 domain AM338_14690 PF02576 RimP N-terminal domain AM338_14700 PF00764 Arginosuccinate synthase AM338_14705 PF00884 Sulfatase AM338_14720 PF03840 Preprotein translocase SecG subunit AM338_14725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM338_14725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM338_14725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM338_14725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM338_14730 PF00809 Pterin binding enzyme AM338_14735 PF01434 Peptidase family M41 AM338_14735 PF06480 FtsH Extracellular AM338_14735 PF17862 AAA+ lid domain AM338_14735 PF00004 ATPase family associated with various cellular activities (AAA) AM338_14740 PF01728 FtsJ-like methyltransferase AM338_14745 PF01985 CRS1 / YhbY (CRM) domain AM338_14750 PF03449 Transcription elongation factor, N-terminal AM338_14750 PF01272 Transcription elongation factor, GreA/GreB, C-term AM338_14755 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM338_14760 PF01926 50S ribosome-binding GTPase AM338_14760 PF01018 GTP1/OBG AM338_14765 PF00892 EamA-like transporter family AM338_14770 PF01016 Ribosomal L27 protein AM338_14775 PF00829 Ribosomal prokaryotic L21 protein AM338_14780 PF00348 Polyprenyl synthetase AM338_14785 PF13693 Winged helix-turn-helix DNA-binding AM338_14790 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM338_14795 PF01722 BolA-like protein AM338_14800 PF13466 STAS domain AM338_14805 PF05494 MlaC protein AM338_14810 PF02470 MlaD protein AM338_14815 PF02405 Permease MlaE AM338_14820 PF00005 ABC transporter AM338_14825 PF01699 Sodium/calcium exchanger protein AM338_14830 PF00571 CBS domain AM338_14830 PF01380 SIS domain AM338_14840 PF06835 Lipopolysaccharide-assembly, LptC-related AM338_14845 PF03968 OstA-like protein AM338_14850 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM338_14850 PF00005 ABC transporter AM338_14855 PF04963 Sigma-54 factor, core binding domain AM338_14855 PF04552 Sigma-54, DNA binding domain AM338_14855 PF00309 Sigma-54 factor, Activator interacting domain (AID) AM338_14860 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM338_14865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_14870 PF03668 P-loop ATPase protein family AM338_14875 PF00381 PTS HPr component phosphorylation site AM338_14880 PF10707 PhoP regulatory network protein YrbL AM338_14885 PF00912 Transglycosylase AM338_14895 PF18415 Histidine kinase receptor ArcB trans-membrane domain AM338_14895 PF00989 PAS fold AM338_14895 PF00072 Response regulator receiver domain AM338_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_14895 PF01627 Hpt domain AM338_14895 PF00512 His Kinase A (phospho-acceptor) domain AM338_14900 PF04055 Radical SAM superfamily AM338_14900 PF16199 Radical_SAM C-terminal domain AM338_14915 PF01493 GXGXG motif AM338_14915 PF01645 Conserved region in glutamate synthase AM338_14915 PF00310 Glutamine amidotransferases class-II AM338_14915 PF04898 Glutamate synthase central domain AM338_14920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_14920 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM338_14930 PF06551 Protein of unknown function (DUF1120) AM338_14935 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_14940 PF13953 PapC C-terminal domain AM338_14940 PF00577 Outer membrane usher protein AM338_14940 PF13954 PapC N-terminal domain AM338_14950 PF06551 Protein of unknown function (DUF1120) AM338_14965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_14980 PF06250 YhcG PDDEXK nuclease domain AM338_14980 PF17761 DUF1016 N-terminal domain AM338_14985 PF04074 YhcH/YjgK/YiaL AM338_14990 PF00480 ROK family AM338_14995 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AM338_15000 PF07690 Major Facilitator Superfamily AM338_15005 PF00701 Dihydrodipicolinate synthetase family AM338_15010 PF07729 FCD domain AM338_15010 PF00392 Bacterial regulatory proteins, gntR family AM338_15020 PF03606 C4-dicarboxylate anaerobic carrier AM338_15025 PF04386 Stringent starvation protein B AM338_15030 PF00043 Glutathione S-transferase, C-terminal domain AM338_15030 PF02798 Glutathione S-transferase, N-terminal domain AM338_15040 PF00380 Ribosomal protein S9/S16 AM338_15045 PF00572 Ribosomal protein L13 AM338_15050 PF03969 AFG1-like ATPase AM338_15055 PF06295 Protein of unknown function (DUF1043) AM338_15060 PF00595 PDZ domain AM338_15060 PF13180 PDZ domain AM338_15065 PF13180 PDZ domain AM338_15070 PF00056 lactate/malate dehydrogenase, NAD binding domain AM338_15070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM338_15075 PF01316 Arginine repressor, DNA binding domain AM338_15075 PF02863 Arginine repressor, C-terminal domain AM338_15080 PF07338 Protein of unknown function (DUF1471) AM338_15085 PF01337 Barstar (barnase inhibitor) AM338_15090 PF04632 Fusaric acid resistance protein family AM338_15095 PF13533 Biotin-lipoyl like AM338_15100 PF07869 Protein of unknown function (DUF1656) AM338_15105 PF03466 LysR substrate binding domain AM338_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_15110 PF01523 Putative modulator of DNA gyrase AM338_15115 PF13116 Protein of unknown function AM338_15115 PF13502 AsmA-like C-terminal region AM338_15120 PF10150 Ribonuclease E/G family AM338_15120 PF00575 S1 RNA binding domain AM338_15125 PF02545 Maf-like protein AM338_15130 PF04093 rod shape-determining protein MreD AM338_15135 PF04085 rod shape-determining protein MreC AM338_15155 PF00990 Diguanylate cyclase, GGDEF domain AM338_15155 PF00563 EAL domain AM338_15155 PF17157 Gammaproteobacterial periplasmic sensor domain AM338_15160 PF08240 Alcohol dehydrogenase GroES-like domain AM338_15160 PF00107 Zinc-binding dehydrogenase AM338_15170 PF00364 Biotin-requiring enzyme AM338_15175 PF02785 Biotin carboxylase C-terminal domain AM338_15175 PF00289 Biotin carboxylase, N-terminal domain AM338_15175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM338_15180 PF06196 Protein of unknown function (DUF997) AM338_15185 PF00474 Sodium:solute symporter family AM338_15195 PF01207 Dihydrouridine synthase (Dus) AM338_15200 PF02954 Bacterial regulatory protein, Fis family AM338_15205 PF01555 DNA methylase AM338_15215 PF13737 Transposase DDE domain AM338_15225 PF00873 AcrB/AcrD/AcrF family AM338_15245 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM338_15250 PF00528 Binding-protein-dependent transport system inner membrane component AM338_15255 PF00528 Binding-protein-dependent transport system inner membrane component AM338_15260 PF00005 ABC transporter AM338_15300 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_15305 PF07369 Protein of unknown function (DUF1488) AM338_15310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AM338_15310 PF01488 Shikimate / quinate 5-dehydrogenase AM338_15310 PF08501 Shikimate dehydrogenase substrate binding domain AM338_15315 PF01300 Telomere recombination AM338_15320 PF01396 Topoisomerase DNA binding C4 zinc finger AM338_15325 PF04361 Protein of unknown function (DUF494) AM338_15330 PF02481 DNA recombination-mediator protein A AM338_15330 PF17782 DprA winged helix domain AM338_15335 PF01327 Polypeptide deformylase AM338_15340 PF00551 Formyl transferase AM338_15340 PF02911 Formyl transferase, C-terminal domain AM338_15345 PF01189 16S rRNA methyltransferase RsmB/F AM338_15345 PF01029 NusB family AM338_15350 PF02080 TrkA-C domain AM338_15350 PF02254 TrkA-N domain AM338_15355 PF01741 Large-conductance mechanosensitive channel, MscL AM338_15360 PF03889 Alternative ribosome-rescue factor A AM338_15365 PF13411 MerR HTH family regulatory protein AM338_15370 PF09350 Domain of unknown function (DUF1992) AM338_15375 PF01196 Ribosomal protein L17 AM338_15380 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM338_15380 PF01000 RNA polymerase Rpb3/RpoA insert domain AM338_15380 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM338_15385 PF00163 Ribosomal protein S4/S9 N-terminal domain AM338_15385 PF01479 S4 domain AM338_15390 PF00411 Ribosomal protein S11 AM338_15395 PF00416 Ribosomal protein S13/S18 AM338_15400 PF00444 Ribosomal protein L36 AM338_15405 PF00344 SecY translocase AM338_15410 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM338_15415 PF00327 Ribosomal protein L30p/L7e AM338_15420 PF00333 Ribosomal protein S5, N-terminal domain AM338_15420 PF03719 Ribosomal protein S5, C-terminal domain AM338_15425 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM338_15430 PF00347 Ribosomal protein L6 AM338_15435 PF00410 Ribosomal protein S8 AM338_15440 PF00253 Ribosomal protein S14p/S29e AM338_15445 PF00281 Ribosomal protein L5 AM338_15445 PF00673 ribosomal L5P family C-terminus AM338_15450 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM338_15450 PF00467 KOW motif AM338_15455 PF00238 Ribosomal protein L14p/L23e AM338_15460 PF00366 Ribosomal protein S17 AM338_15465 PF00831 Ribosomal L29 protein AM338_15470 PF00252 Ribosomal protein L16p/L10e AM338_15475 PF07650 KH domain AM338_15475 PF00189 Ribosomal protein S3, C-terminal domain AM338_15480 PF00237 Ribosomal protein L22p/L17e AM338_15485 PF00203 Ribosomal protein S19 AM338_15490 PF00181 Ribosomal Proteins L2, RNA binding domain AM338_15490 PF03947 Ribosomal Proteins L2, C-terminal domain AM338_15495 PF00276 Ribosomal protein L23 AM338_15500 PF00573 Ribosomal protein L4/L1 family AM338_15505 PF00297 Ribosomal protein L3 AM338_15510 PF00338 Ribosomal protein S10p/S20e AM338_15525 PF13401 AAA domain AM338_15525 PF01471 Putative peptidoglycan binding domain AM338_15530 PF11356 Type II secretion system protein C AM338_15535 PF00263 Bacterial type II and III secretion system protein AM338_15535 PF03958 Bacterial type II/III secretion system short domain AM338_15540 PF00437 Type II/IV secretion system protein AM338_15545 PF00482 Type II secretion system (T2SS), protein F AM338_15550 PF07963 Prokaryotic N-terminal methylation motif AM338_15550 PF08334 Type II secretion system (T2SS), protein G AM338_15555 PF12019 Type II transport protein GspH AM338_15555 PF07963 Prokaryotic N-terminal methylation motif AM338_15560 PF02501 Type II secretion system (T2SS), protein I AM338_15560 PF07963 Prokaryotic N-terminal methylation motif AM338_15565 PF11612 Type II secretion system (T2SS), protein J AM338_15565 PF07963 Prokaryotic N-terminal methylation motif AM338_15575 PF12693 GspL periplasmic domain AM338_15575 PF05134 Type II secretion system (T2SS), protein L AM338_15580 PF04612 Type II secretion system (T2SS), protein M AM338_15585 PF01478 Type IV leader peptidase family AM338_15590 PF00210 Ferritin-like domain AM338_15595 PF04324 BFD-like [2Fe-2S] binding domain AM338_15600 PF02839 Carbohydrate binding domain AM338_15610 PF00009 Elongation factor Tu GTP binding domain AM338_15610 PF03144 Elongation factor Tu domain 2 AM338_15610 PF03143 Elongation factor Tu C-terminal domain AM338_15615 PF14492 Elongation Factor G, domain II AM338_15615 PF03764 Elongation factor G, domain IV AM338_15615 PF00679 Elongation factor G C-terminus AM338_15615 PF03144 Elongation factor Tu domain 2 AM338_15615 PF00009 Elongation factor Tu GTP binding domain AM338_15620 PF00177 Ribosomal protein S7p/S5e AM338_15625 PF00164 Ribosomal protein S12/S23 AM338_15630 PF04077 DsrH like protein AM338_15635 PF02635 DsrE/DsrF-like family AM338_15640 PF02635 DsrE/DsrF-like family AM338_15645 PF13309 HTH domain AM338_15645 PF08348 YheO-like PAS domain AM338_15650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM338_15650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM338_15655 PF04102 SlyX AM338_15660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM338_15665 PF09526 Probable metal-binding protein (DUF2387) AM338_15670 PF02254 TrkA-N domain AM338_15670 PF00999 Sodium/hydrogen exchanger family AM338_15675 PF02525 Flavodoxin-like fold AM338_15685 PF12848 ABC transporter AM338_15685 PF00005 ABC transporter AM338_15690 PF00561 alpha/beta hydrolase fold AM338_15695 PF06794 Uncharacterised protein family (UPF0270) AM338_15700 PF00485 Phosphoribulokinase / Uridine kinase family AM338_15705 PF02566 OsmC-like protein AM338_15715 PF13545 Crp-like helix-turn-helix domain AM338_15715 PF00027 Cyclic nucleotide-binding domain AM338_15720 PF12805 FUSC-like inner membrane protein yccS AM338_15725 PF00202 Aminotransferase class-III AM338_15730 PF00117 Glutamine amidotransferase class-I AM338_15735 PF02661 Fic/DOC family AM338_15740 PF10832 Protein of unknown function (DUF2559) AM338_15745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM338_15750 PF07690 Major Facilitator Superfamily AM338_15755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM338_15755 PF04324 BFD-like [2Fe-2S] binding domain AM338_15755 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM338_15755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_15755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM338_15760 PF13806 Rieske-like [2Fe-2S] domain AM338_15765 PF01226 Formate/nitrite transporter AM338_15770 PF10414 Sirohaem synthase dimerisation region AM338_15770 PF14824 Sirohaem biosynthesis protein central AM338_15770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM338_15775 PF13978 Protein of unknown function (DUF4223) AM338_15780 PF13520 Amino acid permease AM338_15785 PF01380 SIS domain AM338_15795 PF01261 Xylose isomerase-like TIM barrel AM338_15800 PF00294 pfkB family carbohydrate kinase AM338_15805 PF07702 UTRA domain AM338_15805 PF00392 Bacterial regulatory proteins, gntR family AM338_15810 PF00155 Aminotransferase class I and II AM338_15815 PF10797 Protein of unknown function AM338_15820 PF10941 Protein of unknown function DUF2620 AM338_15825 PF02126 Phosphotriesterase family AM338_15830 PF01676 Metalloenzyme superfamily AM338_15835 PF01168 Alanine racemase, N-terminal domain AM338_15845 PF14503 YhfZ C-terminal domain AM338_15845 PF14502 Helix-turn-helix domain AM338_15855 PF00579 tRNA synthetases class I (W and Y) AM338_15860 PF13419 Haloacid dehalogenase-like hydrolase AM338_15865 PF00834 Ribulose-phosphate 3 epimerase family AM338_15870 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM338_15875 PF05036 Sporulation related domain AM338_15880 PF01761 3-dehydroquinate synthase AM338_15885 PF01202 Shikimate kinase AM338_15890 PF00263 Bacterial type II and III secretion system protein AM338_15890 PF03958 Bacterial type II/III secretion system short domain AM338_15895 PF10748 DNA utilization proteins HofP AM338_15905 PF05137 Fimbrial assembly protein (PilN) AM338_15915 PF00912 Transglycosylase AM338_15915 PF00905 Penicillin binding protein transpeptidase domain AM338_15915 PF17092 Penicillin-binding protein OB-like domain AM338_15920 PF00293 NUDIX domain AM338_15925 PF07095 Intracellular growth attenuator protein IgaA AM338_15930 PF13419 Haloacid dehalogenase-like hydrolase AM338_15935 PF01479 S4 domain AM338_15940 PF01430 Hsp33 protein AM338_15945 PF13687 Domain of unknown function (DUF4153) AM338_15955 PF01293 Phosphoenolpyruvate carboxykinase AM338_15960 PF00512 His Kinase A (phospho-acceptor) domain AM338_15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_15960 PF00672 HAMP domain AM338_15965 PF00072 Response regulator receiver domain AM338_15965 PF00486 Transcriptional regulatory protein, C terminal AM338_15975 PF03449 Transcription elongation factor, N-terminal AM338_15975 PF01272 Transcription elongation factor, GreA/GreB, C-term AM338_15980 PF00575 S1 RNA binding domain AM338_15980 PF09371 Tex-like protein N-terminal domain AM338_15980 PF16921 Tex protein YqgF-like domain AM338_15980 PF17674 HHH domain AM338_15990 PF04023 FeoA domain AM338_15995 PF07664 Ferrous iron transport protein B C terminus AM338_15995 PF07670 Nucleoside recognition AM338_15995 PF17910 FeoB cytosolic helical domain AM338_15995 PF02421 Ferrous iron transport protein B AM338_16000 PF09012 FeoC like transcriptional regulator AM338_16010 PF04754 Putative transposase, YhgA-like AM338_16015 PF00561 alpha/beta hydrolase fold AM338_16020 PF00156 Phosphoribosyl transferase domain AM338_16025 PF01106 NifU-like domain AM338_16025 PF01521 Iron-sulphur cluster biosynthesis AM338_16030 PF02447 GntP family permease AM338_16035 PF02446 4-alpha-glucanotransferase AM338_16040 PF00343 Carbohydrate phosphorylase AM338_16045 PF17874 MalT-like TPR region AM338_16045 PF00196 Bacterial regulatory proteins, luxR family AM338_16050 PF01137 RNA 3'-terminal phosphate cyclase AM338_16050 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain AM338_16055 PF01139 tRNA-splicing ligase RtcB AM338_16060 PF06956 Regulator of RNA terminal phosphate cyclase AM338_16060 PF00158 Sigma-54 interaction domain AM338_16065 PF00455 DeoR C terminal sensor domain AM338_16065 PF08220 DeoR-like helix-turn-helix domain AM338_16070 PF01694 Rhomboid family AM338_16070 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AM338_16075 PF00581 Rhodanese-like domain AM338_16080 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AM338_16080 PF01266 FAD dependent oxidoreductase AM338_16095 PF00343 Carbohydrate phosphorylase AM338_16100 PF00534 Glycosyl transferases group 1 AM338_16100 PF08323 Starch synthase catalytic domain AM338_16105 PF00483 Nucleotidyl transferase AM338_16110 PF00128 Alpha amylase, catalytic domain AM338_16110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM338_16110 PF18390 Glycogen debranching enzyme C-terminal domain AM338_16115 PF02806 Alpha amylase, C-terminal all-beta domain AM338_16115 PF00128 Alpha amylase, catalytic domain AM338_16115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM338_16120 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM338_16120 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM338_16125 PF01914 MarC family integral membrane protein AM338_16130 PF02447 GntP family permease AM338_16135 PF01202 Shikimate kinase AM338_16140 PF00356 Bacterial regulatory proteins, lacI family AM338_16140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_16145 PF17954 Quercetinase C-terminal cupin domain AM338_16145 PF02678 Pirin AM338_16150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM338_16150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM338_16160 PF00583 Acetyltransferase (GNAT) family AM338_16165 PF05638 Type VI secretion system effector, Hcp AM338_16180 PF15567 Immunity protein 35 AM338_16195 PF03009 Glycerophosphoryl diester phosphodiesterase family AM338_16200 PF17912 MalK OB fold domain AM338_16200 PF00005 ABC transporter AM338_16205 PF00528 Binding-protein-dependent transport system inner membrane component AM338_16210 PF00528 Binding-protein-dependent transport system inner membrane component AM338_16215 PF13416 Bacterial extracellular solute-binding protein AM338_16220 PF00005 ABC transporter AM338_16225 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM338_16225 PF00005 ABC transporter AM338_16230 PF02653 Branched-chain amino acid transport system / permease component AM338_16230 PF11862 Domain of unknown function (DUF3382) AM338_16235 PF02653 Branched-chain amino acid transport system / permease component AM338_16240 PF13458 Periplasmic binding protein AM338_16250 PF12568 Acetyltransferase (GNAT) domain, PanZ AM338_16255 PF13458 Periplasmic binding protein AM338_16260 PF04542 Sigma-70 region 2 AM338_16260 PF04545 Sigma-70, region 4 AM338_16265 PF18075 FtsX extracellular domain AM338_16265 PF02687 FtsX-like permease family AM338_16270 PF00005 ABC transporter AM338_16275 PF00448 SRP54-type protein, GTPase domain AM338_16275 PF02881 SRP54-type protein, helical bundle domain AM338_16285 PF06611 Protein of unknown function (DUF1145) AM338_16290 PF10694 Protein of unknown function (DUF2500) AM338_16295 PF07947 YhhN family AM338_16300 PF00403 Heavy-metal-associated domain AM338_16305 PF01206 Sulfurtransferase TusA AM338_16310 PF02592 Putative vitamin uptake transporter AM338_16315 PF08786 DcrB AM338_16320 PF07690 Major Facilitator Superfamily AM338_16325 PF01594 AI-2E family transporter AM338_16330 PF01648 4'-phosphopantetheinyl transferase superfamily AM338_16335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_16340 PF00528 Binding-protein-dependent transport system inner membrane component AM338_16345 PF00528 Binding-protein-dependent transport system inner membrane component AM338_16350 PF00005 ABC transporter AM338_16355 PF00005 ABC transporter AM338_16360 PF08753 NikR C terminal nickel binding domain AM338_16360 PF01402 Ribbon-helix-helix protein, copG family AM338_16365 PF05593 RHS Repeat AM338_16365 PF14220 Domain of unknown function (DUF4329) AM338_16365 PF03527 RHS protein AM338_16370 PF15631 NTF2 fold immunity protein AM338_16375 PF03130 PBS lyase HEAT-like repeat AM338_16380 PF01609 Transposase DDE domain AM338_16380 PF13808 DDE_Tnp_1-associated AM338_16390 PF00005 ABC transporter AM338_16395 PF13533 Biotin-lipoyl like AM338_16400 PF13258 Domain of unknown function (DUF4049) AM338_16405 PF13258 Domain of unknown function (DUF4049) AM338_16415 PF10951 Protein of unknown function (DUF2776) AM338_16425 PF01384 Phosphate transporter family AM338_16430 PF10625 Universal stress protein B (UspB) AM338_16435 PF00582 Universal stress protein family AM338_16445 PF00854 POT family AM338_16450 PF04445 Putative SAM-dependent methyltransferase AM338_16455 PF01432 Peptidase family M3 AM338_16460 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AM338_16465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM338_16465 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_16480 PF01022 Bacterial regulatory protein, arsR family AM338_16485 PF02040 Arsenical pump membrane protein AM338_16490 PF03960 ArsC family AM338_16500 PF03843 Outer membrane lipoprotein Slp family AM338_16510 PF00196 Bacterial regulatory proteins, luxR family AM338_16515 PF02308 MgtC family AM338_16520 PF06411 HdeA/HdeB family AM338_16525 PF06411 HdeA/HdeB family AM338_16530 PF03729 Short repeat of unknown function (DUF308) AM338_16535 PF00196 Bacterial regulatory proteins, luxR family AM338_16545 PF00529 HlyD membrane-fusion protein of T1SS AM338_16545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_16550 PF00873 AcrB/AcrD/AcrF family AM338_16560 PF12833 Helix-turn-helix domain AM338_16565 PF12833 Helix-turn-helix domain AM338_16570 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM338_16575 PF00034 Cytochrome c AM338_16575 PF03150 Di-haem cytochrome c peroxidase AM338_16575 PF14376 Haem-binding domain AM338_16580 PF01204 Trehalase AM338_16585 PF00196 Bacterial regulatory proteins, luxR family AM338_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_16590 PF03466 LysR substrate binding domain AM338_16595 PF03631 Virulence factor BrkB AM338_16600 PF07690 Major Facilitator Superfamily AM338_16600 PF00083 Sugar (and other) transporter AM338_16605 PF05170 AsmA family AM338_16610 PF00563 EAL domain AM338_16620 PF00294 pfkB family carbohydrate kinase AM338_16625 PF05193 Peptidase M16 inactive domain AM338_16625 PF00675 Insulinase (Peptidase family M16) AM338_16635 PF00375 Sodium:dicarboxylate symporter family AM338_16645 PF17154 Gammaproteobacterial periplasmic sensor domain AM338_16645 PF00563 EAL domain AM338_16645 PF00672 HAMP domain AM338_16645 PF00990 Diguanylate cyclase, GGDEF domain AM338_16650 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AM338_16655 PF01270 Glycosyl hydrolases family 8 AM338_16660 PF03170 Bacterial cellulose synthase subunit AM338_16665 PF07238 PilZ domain AM338_16665 PF00535 Glycosyl transferase family 2 AM338_16665 PF03552 Cellulose synthase AM338_16675 PF10945 Cellulose biosynthesis protein BcsR AM338_16680 PF10995 Cellulose biosynthesis GIL AM338_16685 PF11120 Cellulose biosynthesis protein BcsF AM338_16690 PF11658 Cellulose biosynthesis protein BcsG AM338_16695 PF13940 Toxin Ldr, type I toxin-antitoxin system AM338_16710 PF03222 Tryptophan/tyrosine permease family AM338_16715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_16715 PF00005 ABC transporter AM338_16720 PF00005 ABC transporter AM338_16720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM338_16725 PF00528 Binding-protein-dependent transport system inner membrane component AM338_16725 PF12911 N-terminal TM domain of oligopeptide transport permease C AM338_16730 PF00528 Binding-protein-dependent transport system inner membrane component AM338_16740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_16760 PF00884 Sulfatase AM338_16760 PF08019 Phosphoethanolamine transferase EptA/EptB AM338_16765 PF07690 Major Facilitator Superfamily AM338_16775 PF03797 Autotransporter beta-domain AM338_16780 PF03352 Methyladenine glycosylase AM338_16785 PF00583 Acetyltransferase (GNAT) family AM338_16790 PF01568 Molydopterin dinucleotide binding domain AM338_16790 PF00384 Molybdopterin oxidoreductase AM338_16790 PF18364 Molybdopterin oxidoreductase N-terminal domain AM338_16795 PF13488 Glycine zipper AM338_16795 PF00691 OmpA family AM338_16800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM338_16800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM338_16805 PF11254 Protein of unknown function (DUF3053) AM338_16810 PF01381 Helix-turn-helix AM338_16815 PF00313 'Cold-shock' DNA-binding domain AM338_16820 PF01848 Hok/gef family AM338_16830 PF02092 Glycyl-tRNA synthetase beta subunit AM338_16830 PF05746 DALR anticodon binding domain AM338_16835 PF02091 Glycyl-tRNA synthetase alpha subunit AM338_16840 PF13983 YsaB-like lipoprotein AM338_16845 PF01757 Acyltransferase family AM338_16850 PF05360 yiaA/B two helix domain AM338_16855 PF05360 yiaA/B two helix domain AM338_16860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_16860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_16870 PF13407 Periplasmic binding protein domain AM338_16875 PF00005 ABC transporter AM338_16880 PF02653 Branched-chain amino acid transport system / permease component AM338_16885 PF12833 Helix-turn-helix domain AM338_16890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AM338_16895 PF00128 Alpha amylase, catalytic domain AM338_16900 PF00155 Aminotransferase class I and II AM338_16905 PF13247 4Fe-4S dicluster domain AM338_16910 PF09339 IclR helix-turn-helix domain AM338_16910 PF01614 Bacterial transcriptional regulator AM338_16915 PF02615 Malate/L-lactate dehydrogenase AM338_16920 PF04074 YhcH/YjgK/YiaL AM338_16925 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AM338_16930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AM338_16935 PF03480 Bacterial extracellular solute-binding protein, family 7 AM338_16940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_16940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_16945 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM338_16950 PF01261 Xylose isomerase-like TIM barrel AM338_16955 PF00596 Class II Aldolase and Adducin N-terminal domain AM338_16965 PF06629 MltA-interacting protein MipA AM338_16970 PF03466 LysR substrate binding domain AM338_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_16975 PF00529 HlyD membrane-fusion protein of T1SS AM338_16975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_16980 PF11742 Protein of unknown function (DUF3302) AM338_16990 PF00171 Aldehyde dehydrogenase family AM338_16995 PF00465 Iron-containing alcohol dehydrogenase AM338_17000 PF00009 Elongation factor Tu GTP binding domain AM338_17000 PF03144 Elongation factor Tu domain 2 AM338_17000 PF09106 Elongation factor SelB, winged helix AM338_17000 PF09107 Elongation factor SelB, winged helix AM338_17005 PF03841 L-seryl-tRNA selenium transferase AM338_17005 PF12390 Selenocysteine synthase N terminal AM338_17010 PF00043 Glutathione S-transferase, C-terminal domain AM338_17010 PF13417 Glutathione S-transferase, N-terminal domain AM338_17015 PF05593 RHS Repeat AM338_17015 PF15606 Bacterial toxin 34 AM338_17015 PF03527 RHS protein AM338_17020 PF03130 PBS lyase HEAT-like repeat AM338_17060 PF15596 Immunity protein 57 AM338_17065 PF00529 HlyD membrane-fusion protein of T1SS AM338_17065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_17070 PF11742 Protein of unknown function (DUF3302) AM338_17075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_17075 PF02378 Phosphotransferase system, EIIC AM338_17075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_17080 PF08125 Mannitol dehydrogenase C-terminal domain AM338_17080 PF01232 Mannitol dehydrogenase Rossmann domain AM338_17085 PF05068 Mannitol repressor AM338_17095 PF10928 Protein of unknown function (DUF2810) AM338_17105 PF02652 L-lactate permease AM338_17110 PF00392 Bacterial regulatory proteins, gntR family AM338_17110 PF07729 FCD domain AM338_17115 PF01070 FMN-dependent dehydrogenase AM338_17120 PF00588 SpoU rRNA Methylase family AM338_17125 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_17125 PF06426 Serine acetyltransferase, N-terminal AM338_17130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM338_17130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM338_17135 PF02556 Preprotein translocase subunit SecB AM338_17140 PF00462 Glutaredoxin AM338_17145 PF00581 Rhodanese-like domain AM338_17155 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM338_17155 PF01676 Metalloenzyme superfamily AM338_17160 PF01551 Peptidase family M23 AM338_17165 PF04748 Divergent polysaccharide deacetylase AM338_17170 PF00535 Glycosyl transferase family 2 AM338_17175 PF00107 Zinc-binding dehydrogenase AM338_17175 PF08240 Alcohol dehydrogenase GroES-like domain AM338_17180 PF00155 Aminotransferase class I and II AM338_17185 PF01370 NAD dependent epimerase/dehydratase family AM338_17190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM338_17195 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM338_17200 PF04932 O-Antigen ligase AM338_17205 PF00534 Glycosyl transferases group 1 AM338_17215 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) AM338_17220 PF08437 Glycosyl transferase family 8 C-terminal AM338_17220 PF01501 Glycosyl transferase family 8 AM338_17225 PF08437 Glycosyl transferase family 8 C-terminal AM338_17225 PF01501 Glycosyl transferase family 8 AM338_17230 PF13439 Glycosyltransferase Family 4 AM338_17230 PF00534 Glycosyl transferases group 1 AM338_17235 PF08437 Glycosyl transferase family 8 C-terminal AM338_17235 PF01501 Glycosyl transferase family 8 AM338_17245 PF00534 Glycosyl transferases group 1 AM338_17245 PF13439 Glycosyltransferase Family 4 AM338_17250 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM338_17255 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AM338_17260 PF01467 Cytidylyltransferase-like AM338_17265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM338_17265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM338_17265 PF06827 Zinc finger found in FPG and IleRS AM338_17270 PF00471 Ribosomal protein L33 AM338_17275 PF00830 Ribosomal L28 family AM338_17280 PF04002 RadC-like JAB domain AM338_17285 PF02441 Flavoprotein AM338_17285 PF04127 DNA / pantothenate metabolism flavoprotein AM338_17290 PF00692 dUTPase AM338_17295 PF00440 Bacterial regulatory proteins, tetR family AM338_17300 PF00156 Phosphoribosyl transferase domain AM338_17305 PF03725 3' exoribonuclease family, domain 2 AM338_17305 PF01138 3' exoribonuclease family, domain 1 AM338_17315 PF08340 Domain of unknown function (DUF1732) AM338_17315 PF03755 YicC-like family, N-terminal region AM338_17320 PF13542 Helix-turn-helix domain of transposase family ISL3 AM338_17320 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM338_17320 PF01610 Transposase AM338_17330 PF03458 UPF0126 domain AM338_17335 PF01653 NAD-dependent DNA ligase adenylation domain AM338_17335 PF03120 NAD-dependent DNA ligase OB-fold domain AM338_17340 PF00625 Guanylate kinase AM338_17345 PF01192 RNA polymerase Rpb6 AM338_17350 PF02824 TGS domain AM338_17350 PF13291 ACT domain AM338_17350 PF04607 Region found in RelA / SpoT proteins AM338_17355 PF12105 SpoU, rRNA methylase, C-terminal AM338_17355 PF00588 SpoU rRNA Methylase family AM338_17360 PF00270 DEAD/DEAH box helicase AM338_17360 PF17191 RecG wedge domain AM338_17360 PF00271 Helicase conserved C-terminal domain AM338_17365 PF03616 Sodium/glutamate symporter AM338_17370 PF00860 Permease family AM338_17375 PF05170 AsmA family AM338_17380 PF01055 Glycosyl hydrolases family 31 AM338_17380 PF13802 Galactose mutarotase-like AM338_17400 PF07690 Major Facilitator Superfamily AM338_17405 PF00892 EamA-like transporter family AM338_17410 PF03180 NLPA lipoprotein AM338_17425 PF07690 Major Facilitator Superfamily AM338_17435 PF06711 Protein of unknown function (DUF1198) AM338_17440 PF00860 Permease family AM338_17445 PF01979 Amidohydrolase family AM338_17445 PF13382 Adenine deaminase C-terminal domain AM338_17450 PF07690 Major Facilitator Superfamily AM338_17455 PF07690 Major Facilitator Superfamily AM338_17460 PF05231 MASE1 AM338_17460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_17460 PF07730 Histidine kinase AM338_17465 PF00072 Response regulator receiver domain AM338_17465 PF00196 Bacterial regulatory proteins, luxR family AM338_17470 PF01842 ACT domain AM338_17475 PF00205 Thiamine pyrophosphate enzyme, central domain AM338_17475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_17475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_17480 PF08049 IlvB leader peptide AM338_17495 PF01610 Transposase AM338_17495 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM338_17495 PF13542 Helix-turn-helix domain of transposase family ISL3 AM338_17510 PF13939 Toxin TisB, type I toxin-antitoxin system AM338_17520 PF07690 Major Facilitator Superfamily AM338_17530 PF02656 Domain of unknown function (DUF202) AM338_17535 PF02656 Domain of unknown function (DUF202) AM338_17545 PF16347 Domain of unknown function (DUF4976) AM338_17545 PF00884 Sulfatase AM338_17550 PF00474 Sodium:solute symporter family AM338_17555 PF02311 AraC-like ligand binding domain AM338_17555 PF12833 Helix-turn-helix domain AM338_17565 PF02378 Phosphotransferase system, EIIC AM338_17565 PF00367 phosphotransferase system, EIIB AM338_17570 PF00392 Bacterial regulatory proteins, gntR family AM338_17570 PF07702 UTRA domain AM338_17575 PF02080 TrkA-C domain AM338_17575 PF06826 Predicted Permease Membrane Region AM338_17580 PF00011 Hsp20/alpha crystallin family AM338_17585 PF00011 Hsp20/alpha crystallin family AM338_17590 PF07119 Protein of unknown function (DUF1375) AM338_17595 PF07676 WD40-like Beta Propeller Repeat AM338_17595 PF12566 Protein of unknown function (DUF3748) AM338_17600 PF01494 FAD binding domain AM338_17605 PF07690 Major Facilitator Superfamily AM338_17610 PF13378 Enolase C-terminal domain-like AM338_17610 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM338_17615 PF01081 KDPG and KHG aldolase AM338_17620 PF05035 2-keto-3-deoxy-galactonokinase AM338_17625 PF00392 Bacterial regulatory proteins, gntR family AM338_17625 PF07729 FCD domain AM338_17640 PF06078 Bacterial protein of unknown function (DUF937) AM338_17645 PF00986 DNA gyrase B subunit, carboxyl terminus AM338_17645 PF00204 DNA gyrase B AM338_17645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_17645 PF01751 Toprim domain AM338_17645 PF18053 DNA gyrase B subunit insert domain AM338_17650 PF02463 RecF/RecN/SMC N terminal domain AM338_17655 PF00712 DNA polymerase III beta subunit, N-terminal domain AM338_17655 PF02767 DNA polymerase III beta subunit, central domain AM338_17655 PF02768 DNA polymerase III beta subunit, C-terminal domain AM338_17660 PF11638 DnaA N-terminal domain AM338_17660 PF00308 Bacterial dnaA protein AM338_17660 PF08299 Bacterial dnaA protein helix-turn-helix AM338_17670 PF00468 Ribosomal protein L34 AM338_17675 PF00825 Ribonuclease P AM338_17680 PF01809 Putative membrane protein insertion efficiency factor AM338_17685 PF02096 60Kd inner membrane protein AM338_17685 PF14849 YidC periplasmic domain AM338_17690 PF01926 50S ribosome-binding GTPase AM338_17690 PF12631 MnmE helical domain AM338_17690 PF10396 GTP-binding protein TrmE N-terminus AM338_17695 PF08053 Tryptophanase operon leader peptide AM338_17700 PF01212 Beta-eliminating lyase AM338_17705 PF03222 Tryptophan/tyrosine permease family AM338_17710 PF07690 Major Facilitator Superfamily AM338_17715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_17715 PF03466 LysR substrate binding domain AM338_17725 PF03358 NADPH-dependent FMN reductase AM338_17730 PF00860 Permease family AM338_17735 PF13419 Haloacid dehalogenase-like hydrolase AM338_17755 PF05717 IS66 Orf2 like protein AM338_17765 PF03691 Uncharacterised protein family (UPF0167) AM338_17770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM338_17785 PF00232 Glycosyl hydrolase family 1 AM338_17790 PF02378 Phosphotransferase system, EIIC AM338_17790 PF00367 phosphotransferase system, EIIB AM338_17790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM338_17795 PF00874 PRD domain AM338_17795 PF03123 CAT RNA binding domain AM338_17800 PF01895 PhoU domain AM338_17805 PF00005 ABC transporter AM338_17810 PF00528 Binding-protein-dependent transport system inner membrane component AM338_17815 PF00528 Binding-protein-dependent transport system inner membrane component AM338_17820 PF12849 PBP superfamily domain AM338_17825 PF01380 SIS domain AM338_17830 PF12804 MobA-like NTP transferase domain AM338_17830 PF14602 Hexapeptide repeat of succinyl-transferase AM338_17830 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_17835 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM338_17835 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AM338_17840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM338_17840 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM338_17845 PF00231 ATP synthase AM338_17850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM338_17850 PF00306 ATP synthase alpha/beta chain, C terminal domain AM338_17850 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM338_17855 PF00213 ATP synthase delta (OSCP) subunit AM338_17860 PF00430 ATP synthase B/B' CF(0) AM338_17865 PF00137 ATP synthase subunit C AM338_17870 PF00119 ATP synthase A chain AM338_17875 PF03899 ATP synthase I chain AM338_17880 PF02527 rRNA small subunit methyltransferase G AM338_17885 PF13932 GidA associated domain AM338_17885 PF01134 Glucose inhibited division protein A AM338_17890 PF00258 Flavodoxin AM338_17895 PF01037 Lrp/AsnC ligand binding domain AM338_17900 PF03590 Aspartate-ammonia ligase AM338_17905 PF05762 VWA domain containing CoxE-like protein AM338_17910 PF17868 AAA lid domain AM338_17910 PF07728 AAA domain (dynein-related subfamily) AM338_17910 PF12592 Protein of unknown function (DUF3763) AM338_17915 PF02705 K+ potassium transporter AM338_17920 PF05025 RbsD / FucU transport protein family AM338_17925 PF00005 ABC transporter AM338_17930 PF02653 Branched-chain amino acid transport system / permease component AM338_17935 PF13407 Periplasmic binding protein domain AM338_17940 PF00294 pfkB family carbohydrate kinase AM338_17945 PF00356 Bacterial regulatory proteins, lacI family AM338_17950 PF07690 Major Facilitator Superfamily AM338_17955 PF07729 FCD domain AM338_17955 PF00392 Bacterial regulatory proteins, gntR family AM338_17990 PF03466 LysR substrate binding domain AM338_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_17995 PF04219 Protein of unknown function, DUF AM338_18000 PF01078 Magnesium chelatase, subunit ChlI AM338_18000 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM338_18010 PF08046 IlvGEDA operon leader peptide AM338_18015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_18015 PF00205 Thiamine pyrophosphate enzyme, central domain AM338_18015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_18025 PF01063 Amino-transferase class IV AM338_18030 PF00920 Dehydratase family AM338_18035 PF00291 Pyridoxal-phosphate dependent enzyme AM338_18035 PF00585 C-terminal regulatory domain of Threonine dehydratase AM338_18040 PF03466 LysR substrate binding domain AM338_18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_18045 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM338_18045 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM338_18060 PF13361 UvrD-like helicase C-terminal domain AM338_18060 PF00580 UvrD/REP helicase N-terminal domain AM338_18065 PF02541 Ppx/GppA phosphatase family AM338_18075 PF00271 Helicase conserved C-terminal domain AM338_18075 PF00270 DEAD/DEAH box helicase AM338_18080 PF00085 Thioredoxin AM338_18090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM338_18090 PF07498 Rho termination factor, N-terminal domain AM338_18090 PF07497 Rho termination factor, RNA-binding domain AM338_18100 PF00953 Glycosyl transferase family 4 AM338_18105 PF02706 Chain length determinant protein AM338_18110 PF02350 UDP-N-acetylglucosamine 2-epimerase AM338_18115 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM338_18115 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM338_18115 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM338_18120 PF16363 GDP-mannose 4,6 dehydratase AM338_18125 PF00483 Nucleotidyl transferase AM338_18135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM338_18140 PF01943 Polysaccharide biosynthesis protein AM338_18145 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 AM338_18150 PF06899 WzyE protein, O-antigen assembly polymerase AM338_18155 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM338_18160 PF00324 Amino acid permease AM338_18185 PF04055 Radical SAM superfamily AM338_18185 PF13186 Iron-sulfur cluster-binding domain AM338_18190 PF00884 Sulfatase AM338_18195 PF07219 HemY protein N-terminus AM338_18195 PF07719 Tetratricopeptide repeat AM338_18200 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AM338_18205 PF02602 Uroporphyrinogen-III synthase HemD AM338_18210 PF03900 Porphobilinogen deaminase, C-terminal domain AM338_18210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM338_18220 PF01295 Adenylate cyclase, class-I AM338_18220 PF12633 Adenylate cyclase NT domain AM338_18225 PF01491 Frataxin-like domain AM338_18235 PF13627 Prokaryotic lipoprotein-attachment site AM338_18240 PF01678 Diaminopimelate epimerase AM338_18245 PF04340 Protein of unknown function, DUF484 AM338_18250 PF00589 Phage integrase family AM338_18250 PF02899 Phage integrase, N-terminal SAM-like domain AM338_18255 PF13419 Haloacid dehalogenase-like hydrolase AM338_18260 PF00580 UvrD/REP helicase N-terminal domain AM338_18260 PF13361 UvrD-like helicase C-terminal domain AM338_18265 PF09992 Phosphodiester glycosidase AM338_18270 PF01544 CorA-like Mg2+ transporter protein AM338_18275 PF10947 Protein of unknown function (DUF2628) AM338_18285 PF00892 EamA-like transporter family AM338_18290 PF03061 Thioesterase superfamily AM338_18295 PF02253 Phospholipase A1 AM338_18300 PF00270 DEAD/DEAH box helicase AM338_18300 PF00271 Helicase conserved C-terminal domain AM338_18300 PF00570 HRDC domain AM338_18300 PF16124 RecQ zinc-binding AM338_18300 PF09382 RQC domain AM338_18305 PF01810 LysE type translocator AM338_18310 PF01810 LysE type translocator AM338_18315 PF12146 Serine aminopeptidase, S33 AM338_18325 PF00892 EamA-like transporter family AM338_18330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_18330 PF03466 LysR substrate binding domain AM338_18335 PF01717 Cobalamin-independent synthase, Catalytic domain AM338_18335 PF08267 Cobalamin-independent synthase, N-terminal domain AM338_18340 PF01738 Dienelactone hydrolase family AM338_18345 PF01048 Phosphorylase superfamily AM338_18355 PF02646 RmuC family AM338_18360 PF01209 ubiE/COQ5 methyltransferase family AM338_18365 PF02036 SCP-2 sterol transfer family AM338_18370 PF03109 ABC1 family AM338_18375 PF02416 mttA/Hcf106 family AM338_18385 PF00902 Sec-independent protein translocase protein (TatC) AM338_18390 PF01026 TatD related DNase AM338_18395 PF02357 Transcription termination factor nusG AM338_18400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM338_18405 PF00175 Oxidoreductase NAD-binding domain AM338_18405 PF00970 Oxidoreductase FAD-binding domain AM338_18410 PF00108 Thiolase, N-terminal domain AM338_18410 PF02803 Thiolase, C-terminal domain AM338_18415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM338_18415 PF00378 Enoyl-CoA hydratase/isomerase AM338_18415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM338_18420 PF00557 Metallopeptidase family M24 AM338_18425 PF01205 Uncharacterized protein family UPF0029 AM338_18425 PF09186 Domain of unknown function (DUF1949) AM338_18430 PF02386 Cation transport protein AM338_18435 PF12724 Flavodoxin domain AM338_18465 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AM338_18470 PF12804 MobA-like NTP transferase domain AM338_18475 PF06288 Protein of unknown function (DUF1040) AM338_18480 PF01636 Phosphotransferase enzyme family AM338_18485 PF01323 DSBA-like thioredoxin domain AM338_18490 PF06097 Bacterial protein of unknown function (DUF945) AM338_18495 PF01553 Acyltransferase AM338_18505 PF00476 DNA polymerase family A AM338_18505 PF01612 3'-5' exonuclease AM338_18505 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM338_18505 PF01367 5'-3' exonuclease, C-terminal SAM fold AM338_18510 PF01926 50S ribosome-binding GTPase AM338_18520 PF04220 Der GTPase activator (YihI) AM338_18525 PF06969 HemN C-terminal domain AM338_18525 PF04055 Radical SAM superfamily AM338_18535 PF02954 Bacterial regulatory protein, Fis family AM338_18535 PF00158 Sigma-54 interaction domain AM338_18535 PF00072 Response regulator receiver domain AM338_18540 PF00989 PAS fold AM338_18540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_18540 PF00512 His Kinase A (phospho-acceptor) domain AM338_18545 PF03951 Glutamine synthetase, beta-Grasp domain AM338_18545 PF00120 Glutamine synthetase, catalytic domain AM338_18560 PF00392 Bacterial regulatory proteins, gntR family AM338_18560 PF07702 UTRA domain AM338_18565 PF01261 Xylose isomerase-like TIM barrel AM338_18570 PF07690 Major Facilitator Superfamily AM338_18575 PF06178 Oligogalacturonate-specific porin protein (KdgM) AM338_18590 PF01055 Glycosyl hydrolases family 31 AM338_18595 PF01263 Aldose 1-epimerase AM338_18605 PF01791 DeoC/LacD family aldolase AM338_18610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM338_18610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM338_18615 PF00294 pfkB family carbohydrate kinase AM338_18620 PF00455 DeoR C terminal sensor domain AM338_18620 PF08220 DeoR-like helix-turn-helix domain AM338_18625 PF13419 Haloacid dehalogenase-like hydrolase AM338_18630 PF03631 Virulence factor BrkB AM338_18635 PF02580 D-Tyr-tRNA(Tyr) deacylase AM338_18640 PF09500 Putative thioesterase (yiiD_Cterm) AM338_18640 PF00583 Acetyltransferase (GNAT) family AM338_18645 PF01402 Ribbon-helix-helix protein, copG family AM338_18655 PF04216 Protein involved in formate dehydrogenase formation AM338_18660 PF01292 Prokaryotic cytochrome b561 AM338_18665 PF09163 Formate dehydrogenase N, transmembrane AM338_18665 PF13247 4Fe-4S dicluster domain AM338_18680 PF02634 FdhD/NarQ family AM338_18685 PF12889 Protein of unknown function (DUF3829) AM338_18690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_18690 PF08279 HTH domain AM338_18695 PF05343 M42 glutamyl aminopeptidase AM338_18700 PF02378 Phosphotransferase system, EIIC AM338_18700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_18705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_18710 PF05336 L-rhamnose mutarotase AM338_18715 PF00596 Class II Aldolase and Adducin N-terminal domain AM338_18720 PF06134 L-rhamnose isomerase (RhaA) AM338_18725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_18725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_18730 PF12833 Helix-turn-helix domain AM338_18730 PF02311 AraC-like ligand binding domain AM338_18735 PF12833 Helix-turn-helix domain AM338_18735 PF02311 AraC-like ligand binding domain AM338_18740 PF06379 L-rhamnose-proton symport protein (RhaT) AM338_18745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM338_18745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM338_18755 PF03812 2-keto-3-deoxygluconate permease AM338_18760 PF03473 MOSC domain AM338_18760 PF03475 3-alpha domain AM338_18765 PF16527 Two-component sensor protein CpxA, periplasmic domain AM338_18765 PF00672 HAMP domain AM338_18765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_18765 PF00512 His Kinase A (phospho-acceptor) domain AM338_18770 PF00486 Transcriptional regulatory protein, C terminal AM338_18770 PF00072 Response regulator receiver domain AM338_18775 PF07813 LTXXQ motif family protein AM338_18780 PF01545 Cation efflux family AM338_18780 PF16916 Dimerisation domain of Zinc Transporter AM338_18785 PF00365 Phosphofructokinase AM338_18795 PF02611 CDP-diacylglycerol pyrophosphatase AM338_18800 PF00121 Triosephosphate isomerase AM338_18810 PF07305 Protein of unknown function (DUF1454) AM338_18815 PF05656 Protein of unknown function (DUF805) AM338_18820 PF04175 Protein of unknown function (DUF406) AM338_18825 PF00582 Universal stress protein family AM338_18830 PF00970 Oxidoreductase FAD-binding domain AM338_18830 PF00175 Oxidoreductase NAD-binding domain AM338_18835 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM338_18840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_18840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_18845 PF00230 Major intrinsic protein AM338_18850 PF06005 Cell division protein ZapB AM338_18855 PF03737 Aldolase/RraA AM338_18860 PF01040 UbiA prenyltransferase family AM338_18865 PF00004 ATPase family associated with various cellular activities (AAA) AM338_18865 PF07724 AAA domain (Cdc48 subfamily) AM338_18865 PF10431 C-terminal, D2-small domain, of ClpB protein AM338_18870 PF00227 Proteasome subunit AM338_18875 PF05036 Sporulation related domain AM338_18880 PF00356 Bacterial regulatory proteins, lacI family AM338_18885 PF18074 Primosomal protein N C-terminal domain AM338_18885 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM338_18885 PF00270 DEAD/DEAH box helicase AM338_18885 PF17764 3′ DNA-binding domain (3′BD) AM338_18885 PF00271 Helicase conserved C-terminal domain AM338_18890 PF01197 Ribosomal protein L31 AM338_18895 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AM338_18900 PF01340 Met Apo-repressor, MetJ AM338_18905 PF01053 Cys/Met metabolism PLP-dependent enzyme AM338_18910 PF03447 Homoserine dehydrogenase, NAD binding domain AM338_18910 PF00696 Amino acid kinase family AM338_18910 PF00742 Homoserine dehydrogenase AM338_18915 PF02219 Methylenetetrahydrofolate reductase AM338_18920 PF00141 Peroxidase AM338_18925 PF00892 EamA-like transporter family AM338_18930 PF06940 Domain of unknown function (DUF1287) AM338_18935 PF00465 Iron-containing alcohol dehydrogenase AM338_18940 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM338_18945 PF05524 PEP-utilising enzyme, N-terminal AM338_18945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_18945 PF00391 PEP-utilising enzyme, mobile domain AM338_18945 PF02896 PEP-utilising enzyme, TIM barrel domain AM338_18945 PF00381 PTS HPr component phosphorylation site AM338_18955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_18965 PF04055 Radical SAM superfamily AM338_18970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_18975 PF12833 Helix-turn-helix domain AM338_18980 PF00884 Sulfatase AM338_18985 PF00311 Phosphoenolpyruvate carboxylase AM338_18995 PF07687 Peptidase dimerisation domain AM338_18995 PF01546 Peptidase family M20/M25/M40 AM338_19000 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM338_19000 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM338_19005 PF00696 Amino acid kinase family AM338_19010 PF00206 Lyase AM338_19010 PF14698 Argininosuccinate lyase C-terminal AM338_19015 PF03466 LysR substrate binding domain AM338_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_19020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_19020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM338_19030 PF00440 Bacterial regulatory proteins, tetR family AM338_19035 PF07226 Protein of unknown function (DUF1422) AM338_19040 PF05958 tRNA (Uracil-5-)-methyltransferase AM338_19045 PF00593 TonB dependent receptor AM338_19045 PF07715 TonB-dependent Receptor Plug Domain AM338_19050 PF01177 Asp/Glu/Hydantoin racemase AM338_19075 PF01565 FAD binding domain AM338_19075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM338_19080 PF08279 HTH domain AM338_19080 PF02237 Biotin protein ligase C terminal domain AM338_19080 PF03099 Biotin/lipoate A/B protein ligase family AM338_19085 PF00485 Phosphoribulokinase / Uridine kinase family AM338_19120 PF03144 Elongation factor Tu domain 2 AM338_19120 PF03143 Elongation factor Tu C-terminal domain AM338_19120 PF00009 Elongation factor Tu GTP binding domain AM338_19125 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM338_19130 PF00467 KOW motif AM338_19130 PF02357 Transcription termination factor nusG AM338_19135 PF00298 Ribosomal protein L11, RNA binding domain AM338_19135 PF03946 Ribosomal protein L11, N-terminal domain AM338_19140 PF00687 Ribosomal protein L1p/L10e family AM338_19150 PF00466 Ribosomal protein L10 AM338_19155 PF00542 Ribosomal protein L7/L12 C-terminal domain AM338_19155 PF16320 Ribosomal protein L7/L12 dimerisation domain AM338_19160 PF04560 RNA polymerase Rpb2, domain 7 AM338_19160 PF00562 RNA polymerase Rpb2, domain 6 AM338_19160 PF04563 RNA polymerase beta subunit AM338_19160 PF04561 RNA polymerase Rpb2, domain 2 AM338_19160 PF10385 RNA polymerase beta subunit external 1 domain AM338_19160 PF04565 RNA polymerase Rpb2, domain 3 AM338_19165 PF04983 RNA polymerase Rpb1, domain 3 AM338_19165 PF05000 RNA polymerase Rpb1, domain 4 AM338_19165 PF04998 RNA polymerase Rpb1, domain 5 AM338_19165 PF00623 RNA polymerase Rpb1, domain 2 AM338_19165 PF04997 RNA polymerase Rpb1, domain 1 AM338_19175 PF06968 Biotin and Thiamin Synthesis associated domain AM338_19175 PF04055 Radical SAM superfamily AM338_19180 PF05690 Thiazole biosynthesis protein ThiG AM338_19185 PF02597 ThiS family AM338_19190 PF00899 ThiF family AM338_19195 PF02581 Thiamine monophosphate synthase AM338_19200 PF01964 Radical SAM ThiC family AM338_19200 PF13667 ThiC-associated domain AM338_19205 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AM338_19210 PF09297 NADH pyrophosphatase zinc ribbon domain AM338_19210 PF00293 NUDIX domain AM338_19215 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM338_19220 PF04493 Endonuclease V AM338_19225 PF04222 Protein of unknown function (DUF416) AM338_19230 PF00216 Bacterial DNA-binding protein AM338_19235 PF07356 Protein of unknown function (DUF1481) AM338_19240 PF13801 Heavy-metal resistance AM338_19250 PF00512 His Kinase A (phospho-acceptor) domain AM338_19250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_19255 PF00072 Response regulator receiver domain AM338_19255 PF00158 Sigma-54 interaction domain AM338_19255 PF02954 Bacterial regulatory protein, Fis family AM338_19260 PF02843 Phosphoribosylglycinamide synthetase, C domain AM338_19260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM338_19260 PF02844 Phosphoribosylglycinamide synthetase, N domain AM338_19265 PF02142 MGS-like domain AM338_19265 PF01808 AICARFT/IMPCHase bienzyme AM338_19300 PF13673 Acetyltransferase (GNAT) domain AM338_19305 PF04204 Homoserine O-succinyltransferase AM338_19310 PF01274 Malate synthase AM338_19315 PF00463 Isocitrate lyase family AM338_19320 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AM338_19325 PF07906 ShET2 enterotoxin, N-terminal region AM338_19330 PF09339 IclR helix-turn-helix domain AM338_19330 PF01614 Bacterial transcriptional regulator AM338_19335 PF02574 Homocysteine S-methyltransferase AM338_19335 PF00809 Pterin binding enzyme AM338_19335 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM338_19335 PF02607 B12 binding domain AM338_19335 PF02310 B12 binding domain AM338_19340 PF02690 Na+/Pi-cotransporter AM338_19345 PF03575 Peptidase family S51 AM338_19350 PF00849 RNA pseudouridylate synthase AM338_19350 PF01479 S4 domain AM338_19355 PF11656 YjbD family (DUF3811) AM338_19360 PF01842 ACT domain AM338_19360 PF00696 Amino acid kinase family AM338_19375 PF00342 Phosphoglucose isomerase AM338_19380 PF11106 Exopolysaccharide production protein YjbE AM338_19385 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AM338_19390 PF06251 Capsule biosynthesis GfcC AM338_19395 PF06082 Exopolysaccharide biosynthesis protein YbjH AM338_19400 PF17089 Uncharacterised protein family AM338_19405 PF06146 Phosphate-starvation-inducible E AM338_19410 PF00083 Sugar (and other) transporter AM338_19415 PF00528 Binding-protein-dependent transport system inner membrane component AM338_19420 PF00528 Binding-protein-dependent transport system inner membrane component AM338_19420 PF14785 Maltose transport system permease protein MalF P2 domain AM338_19425 PF01547 Bacterial extracellular solute-binding protein AM338_19435 PF00005 ABC transporter AM338_19435 PF17912 MalK OB fold domain AM338_19440 PF02264 LamB porin AM338_19445 PF07148 Maltose operon periplasmic protein precursor (MalM) AM338_19455 PF13599 Pentapeptide repeats (9 copies) AM338_19455 PF13981 SopA-like central domain AM338_19465 PF04345 Chorismate lyase AM338_19470 PF01040 UbiA prenyltransferase family AM338_19475 PF01553 Acyltransferase AM338_19480 PF01219 Prokaryotic diacylglycerol kinase AM338_19485 PF01726 LexA DNA binding domain AM338_19485 PF00717 Peptidase S24-like AM338_19490 PF01554 MatE AM338_19495 PF05532 CsbD-like AM338_19500 PF01475 Ferric uptake regulator family AM338_19510 PF10897 Protein of unknown function (DUF2713) AM338_19515 PF01207 Dihydrouridine synthase (Dus) AM338_19600 PF06069 PerC transcriptional activator AM338_19605 PF00717 Peptidase S24-like AM338_19605 PF01726 LexA DNA binding domain AM338_19610 PF05866 Endodeoxyribonuclease RusA AM338_19620 PF06147 Protein of unknown function (DUF968) AM338_19630 PF00145 C-5 cytosine-specific DNA methylase AM338_19650 PF01555 DNA methylase AM338_19655 PF04971 Bacteriophage P21 holin S AM338_19660 PF00959 Phage lysozyme AM338_19665 PF03245 Bacteriophage Rz lysis protein AM338_19705 PF00574 Clp protease AM338_19775 PF06316 Enterobacterial Ail/Lom protein AM338_19780 PF07484 Phage Tail Collar Domain AM338_19780 PF08400 Prophage tail fibre N-terminal AM338_19780 PF03335 Phage tail fibre repeat AM338_19785 PF02413 Caudovirales tail fibre assembly protein, lambda gpK AM338_19790 PF06183 DinI-like family AM338_19800 PF01207 Dihydrouridine synthase (Dus) AM338_19805 PF09583 Phage shock protein G (Phageshock_PspG) AM338_19810 PF00107 Zinc-binding dehydrogenase AM338_19810 PF08240 Alcohol dehydrogenase GroES-like domain AM338_19815 PF00772 DnaB-like helicase N terminal domain AM338_19815 PF03796 DnaB-like helicase C terminal domain AM338_19820 PF00842 Alanine racemase, C-terminal domain AM338_19820 PF01168 Alanine racemase, N-terminal domain AM338_19825 PF00155 Aminotransferase class I and II AM338_19835 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AM338_19840 PF01894 Uncharacterised protein family UPF0047 AM338_19845 PF04237 YjbR AM338_19850 PF17755 UvrA DNA-binding domain AM338_19850 PF00005 ABC transporter AM338_19850 PF17760 UvrA interaction domain AM338_19860 PF00436 Single-strand binding protein family AM338_19865 PF02899 Phage integrase, N-terminal SAM-like domain AM338_19865 PF00589 Phage integrase family AM338_19900 PF15940 Family of unknown function AM338_19910 PF00563 EAL domain AM338_19910 PF12792 CSS motif domain associated with EAL AM338_19915 PF12833 Helix-turn-helix domain AM338_19920 PF09278 MerR, DNA binding AM338_19920 PF00376 MerR family regulatory protein AM338_19940 PF00860 Permease family AM338_19945 PF00999 Sodium/hydrogen exchanger family AM338_19950 PF00805 Pentapeptide repeats (8 copies) AM338_19955 PF00474 Sodium:solute symporter family AM338_19960 PF04341 Protein of unknown function, DUF485 AM338_19965 PF00501 AMP-binding enzyme AM338_19965 PF13193 AMP-binding enzyme C-terminal domain AM338_19965 PF16177 Acetyl-coenzyme A synthetase N-terminus AM338_19975 PF02335 Cytochrome c552 AM338_19980 PF13435 Cytochrome c554 and c-prime AM338_19980 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AM338_19985 PF00037 4Fe-4S binding domain AM338_19985 PF13247 4Fe-4S dicluster domain AM338_19990 PF03916 Polysulphide reductase, NrfD AM338_19995 PF01578 Cytochrome C assembly protein AM338_19995 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AM338_20000 PF03918 Cytochrome C biogenesis protein AM338_20015 PF00375 Sodium:dicarboxylate symporter family AM338_20020 PF08238 Sel1 repeat AM338_20030 PF02321 Outer membrane efflux protein AM338_20035 PF04632 Fusaric acid resistance protein family AM338_20040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_20040 PF00529 HlyD membrane-fusion protein of T1SS AM338_20045 PF17090 Uncharacterised protein family AM338_20050 PF14864 Alkyl sulfatase C-terminal AM338_20050 PF14863 Alkyl sulfatase dimerisation AM338_20050 PF00753 Metallo-beta-lactamase superfamily AM338_20055 PF00480 ROK family AM338_20060 PF00834 Ribulose-phosphate 3 epimerase family AM338_20065 PF02653 Branched-chain amino acid transport system / permease component AM338_20070 PF00005 ABC transporter AM338_20075 PF13407 Periplasmic binding protein domain AM338_20080 PF01418 Helix-turn-helix domain, rpiR family AM338_20080 PF01380 SIS domain AM338_20090 PF02502 Ribose/Galactose Isomerase AM338_20100 PF12706 Beta-lactamase superfamily domain AM338_20105 PF00583 Acetyltransferase (GNAT) family AM338_20115 PF07969 Amidohydrolase family AM338_20120 PF00005 ABC transporter AM338_20125 PF00005 ABC transporter AM338_20130 PF06007 Phosphonate metabolism protein PhnJ AM338_20135 PF05861 Bacterial phosphonate metabolism protein (PhnI) AM338_20140 PF05845 Bacterial phosphonate metabolism protein (PhnH) AM338_20145 PF06754 Phosphonate metabolism protein PhnG AM338_20150 PF07702 UTRA domain AM338_20150 PF00392 Bacterial regulatory proteins, gntR family AM338_20165 PF00005 ABC transporter AM338_20170 PF06983 3-demethylubiquinone-9 3-methyltransferase AM338_20175 PF03831 PhnA domain AM338_20175 PF08274 PhnA Zinc-Ribbon AM338_20190 PF13990 YjcZ-like protein AM338_20195 PF00083 Sugar (and other) transporter AM338_20195 PF08946 Osmosensory transporter coiled coil AM338_20205 PF00512 His Kinase A (phospho-acceptor) domain AM338_20205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_20210 PF00486 Transcriptional regulatory protein, C terminal AM338_20210 PF00072 Response regulator receiver domain AM338_20215 PF08019 Phosphoethanolamine transferase EptA/EptB AM338_20215 PF00884 Sulfatase AM338_20220 PF13520 Amino acid permease AM338_20225 PF12833 Helix-turn-helix domain AM338_20230 PF01276 Orn/Lys/Arg decarboxylase, major domain AM338_20230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM338_20230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM338_20235 PF12833 Helix-turn-helix domain AM338_20240 PF02056 Family 4 glycosyl hydrolase AM338_20240 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM338_20250 PF09997 Predicted membrane protein (DUF2238) AM338_20255 PF05681 Fumarate hydratase (Fumerase) AM338_20255 PF05683 Fumarase C-terminus AM338_20260 PF03605 Anaerobic c4-dicarboxylate membrane transporter AM338_20270 PF00072 Response regulator receiver domain AM338_20275 PF00989 PAS fold AM338_20275 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AM338_20275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_20275 PF17203 Single cache domain 3 AM338_20280 PF06902 Divergent 4Fe-4S mono-cluster AM338_20285 PF14542 GCN5-related N-acetyl-transferase AM338_20295 PF11080 Endoribonuclease GhoS AM338_20300 PF10753 Toxin GhoT_OrtT AM338_20305 PF01336 OB-fold nucleic acid binding domain AM338_20305 PF00152 tRNA synthetases class II (D, K and N) AM338_20310 PF00854 POT family AM338_20315 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM338_20315 PF01276 Orn/Lys/Arg decarboxylase, major domain AM338_20315 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM338_20320 PF13520 Amino acid permease AM338_20325 PF18500 CadC C-terminal domain 1 AM338_20325 PF00486 Transcriptional regulatory protein, C terminal AM338_20345 PF11412 Disulphide bond corrector protein DsbC AM338_20345 PF02683 Cytochrome C biogenesis protein transmembrane region AM338_20350 PF03091 CutA1 divalent ion tolerance protein AM338_20355 PF03605 Anaerobic c4-dicarboxylate membrane transporter AM338_20360 PF00206 Lyase AM338_20360 PF10415 Fumarase C C-terminus AM338_20365 PF04186 FxsA cytoplasmic membrane protein AM338_20370 PF13520 Amino acid permease AM338_20375 PF00166 Chaperonin 10 Kd subunit AM338_20380 PF00118 TCP-1/cpn60 chaperonin family AM338_20385 PF13698 Domain of unknown function (DUF4156) AM338_20390 PF15922 YjeJ-like AM338_20395 PF04055 Radical SAM superfamily AM338_20400 PF09285 Elongation factor P, C-terminal AM338_20400 PF08207 Elongation factor P (EF-P) KOW-like domain AM338_20400 PF01132 Elongation factor P (EF-P) OB domain AM338_20405 PF08085 Entericidin EcnA/B family AM338_20410 PF08085 Entericidin EcnA/B family AM338_20415 PF00893 Small Multidrug Resistance protein AM338_20420 PF08212 Lipocalin-like domain AM338_20425 PF00144 Beta-lactamase AM338_20430 PF02313 Fumarate reductase subunit D AM338_20435 PF02300 Fumarate reductase subunit C AM338_20440 PF13085 2Fe-2S iron-sulfur cluster binding domain AM338_20440 PF13183 4Fe-4S dicluster domain AM338_20445 PF02910 Fumarate reductase flavoprotein C-term AM338_20445 PF00890 FAD binding domain AM338_20450 PF00152 tRNA synthetases class II (D, K and N) AM338_20455 PF13520 Amino acid permease AM338_20465 PF10840 Protein of unknown function (DUF2645) AM338_20470 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM338_20470 PF12795 Mechanosensitive ion channel porin domain AM338_20470 PF00924 Mechanosensitive ion channel AM338_20475 PF02666 Phosphatidylserine decarboxylase AM338_20480 PF03193 RsgA GTPase AM338_20490 PF00929 Exonuclease AM338_20510 PF08331 Domain of unknown function (DUF1730) AM338_20515 PF01256 Carbohydrate kinase AM338_20515 PF03853 YjeF-related protein N-terminus AM338_20520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM338_20525 PF01520 N-acetylmuramoyl-L-alanine amidase AM338_20530 PF08676 MutL C terminal dimerisation domain AM338_20530 PF01119 DNA mismatch repair protein, C-terminal domain AM338_20540 PF17209 Hfq protein AM338_20545 PF13167 GTP-binding GTPase N-terminal AM338_20545 PF01926 50S ribosome-binding GTPase AM338_20545 PF16360 GTP-binding GTPase Middle Region AM338_20550 PF12221 Bacterial membrane protein N terminal AM338_20550 PF01145 SPFH domain / Band 7 family AM338_20555 PF01145 SPFH domain / Band 7 family AM338_20560 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AM338_20565 PF00709 Adenylosuccinate synthetase AM338_20570 PF02082 Transcriptional regulator AM338_20575 PF00575 S1 RNA binding domain AM338_20575 PF00773 RNB domain AM338_20575 PF08461 Ribonuclease R winged-helix domain AM338_20575 PF17876 Cold shock domain AM338_20575 PF08206 Ribonuclease B OB domain AM338_20580 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM338_20580 PF00588 SpoU rRNA Methylase family AM338_20585 PF01614 Bacterial transcriptional regulator AM338_20585 PF09339 IclR helix-turn-helix domain AM338_20590 PF00701 Dihydrodipicolinate synthetase family AM338_20595 PF07690 Major Facilitator Superfamily AM338_20600 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AM338_20600 PF08666 SAF domain AM338_20615 PF10679 Protein of unknown function (DUF2491) AM338_20620 PF03994 Domain of Unknown Function (DUF350) AM338_20625 PF06693 Protein of unknown function (DUF1190) AM338_20630 PF03738 Glutathionylspermidine synthase preATP-grasp AM338_20635 PF18158 Adaptive response protein AidB N-terminal domain AM338_20635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM338_20635 PF02770 Acyl-CoA dehydrogenase, middle domain AM338_20645 PF07338 Protein of unknown function (DUF1471) AM338_20650 PF07338 Protein of unknown function (DUF1471) AM338_20655 PF00326 Prolyl oligopeptidase family AM338_20660 PF08220 DeoR-like helix-turn-helix domain AM338_20660 PF00455 DeoR C terminal sensor domain AM338_20675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM338_20680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM338_20685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM338_20690 PF01261 Xylose isomerase-like TIM barrel AM338_20695 PF00596 Class II Aldolase and Adducin N-terminal domain AM338_20700 PF07274 Protein of unknown function (DUF1440) AM338_20705 PF07338 Protein of unknown function (DUF1471) AM338_20710 PF01250 Ribosomal protein S6 AM338_20715 PF00436 Single-strand binding protein family AM338_20720 PF01084 Ribosomal protein S18 AM338_20725 PF01281 Ribosomal protein L9, N-terminal domain AM338_20725 PF03948 Ribosomal protein L9, C-terminal domain AM338_20730 PF10887 Protein of unknown function (DUF2686) AM338_20740 PF01797 Transposase IS200 like AM338_20745 PF07282 Putative transposase DNA-binding domain AM338_20745 PF01385 Probable transposase AM338_20745 PF12323 Helix-turn-helix domain AM338_20755 PF04225 Opacity-associated protein A LysM-like domain AM338_20755 PF08525 Opacity-associated protein A N-terminal motif AM338_20765 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM338_20765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM338_20770 PF00324 Amino acid permease AM338_20775 PF04405 Domain of Unknown function (DUF542) AM338_20775 PF01814 Hemerythrin HHE cation binding domain AM338_20780 PF00892 EamA-like transporter family AM338_20785 PF05368 NmrA-like family AM338_20790 PF01638 HxlR-like helix-turn-helix AM338_20795 PF02872 5'-nucleotidase, C-terminal domain AM338_20795 PF00149 Calcineurin-like phosphoesterase AM338_20800 PF00459 Inositol monophosphatase family AM338_20815 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AM338_20820 PF06526 Protein of unknown function (DUF1107) AM338_20825 PF01595 Cyclin M transmembrane N-terminal domain AM338_20825 PF03471 Transporter associated domain AM338_20825 PF00571 CBS domain AM338_20830 PF01625 Peptide methionine sulfoxide reductase AM338_20840 PF17243 POTRA domain TamA domain 1 AM338_20840 PF07244 Surface antigen variable number repeat AM338_20840 PF01103 Surface antigen AM338_20845 PF04357 TamB, inner membrane protein subunit of TAM complex AM338_20850 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AM338_20855 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AM338_20860 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AM338_20865 PF00719 Inorganic pyrophosphatase AM338_20870 PF13407 Periplasmic binding protein domain AM338_20875 PF00005 ABC transporter AM338_20880 PF02653 Branched-chain amino acid transport system / permease component AM338_20885 PF02653 Branched-chain amino acid transport system / permease component AM338_20890 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AM338_20895 PF02875 Mur ligase family, glutamate ligase domain AM338_20895 PF01225 Mur ligase family, catalytic domain AM338_20895 PF08245 Mur ligase middle domain AM338_20900 PF04751 Protein of unknown function (DUF615) AM338_20905 PF01523 Putative modulator of DNA gyrase AM338_20910 PF07361 Cytochrome b562 AM338_20920 PF03477 ATP cone domain AM338_20920 PF13597 Anaerobic ribonucleoside-triphosphate reductase AM338_20925 PF11941 Domain of unknown function (DUF3459) AM338_20925 PF00128 Alpha amylase, catalytic domain AM338_20930 PF00367 phosphotransferase system, EIIB AM338_20930 PF02378 Phosphotransferase system, EIIC AM338_20935 PF00356 Bacterial regulatory proteins, lacI family AM338_20940 PF00690 Cation transporter/ATPase, N-terminus AM338_20940 PF00689 Cation transporting ATPase, C-terminus AM338_20945 PF01042 Endoribonuclease L-PSP AM338_20950 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AM338_20950 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AM338_20955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM338_20955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM338_20960 PF08052 PyrBI operon leader peptide AM338_20970 PF01042 Endoribonuclease L-PSP AM338_20980 PF00440 Bacterial regulatory proteins, tetR family AM338_20985 PF04074 YhcH/YjgK/YiaL AM338_20995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM338_20995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM338_21000 PF06877 Regulator of ribonuclease activity B AM338_21005 PF00583 Acetyltransferase (GNAT) family AM338_21010 PF05987 Bacterial protein of unknown function (DUF898) AM338_21015 PF08264 Anticodon-binding domain of tRNA AM338_21015 PF10458 Valyl tRNA synthetase tRNA binding arm AM338_21015 PF00133 tRNA synthetases class I (I, L, M and V) AM338_21020 PF04364 DNA polymerase III chi subunit, HolC AM338_21025 PF02789 Cytosol aminopeptidase family, N-terminal domain AM338_21025 PF00883 Cytosol aminopeptidase family, catalytic domain AM338_21030 PF03739 Lipopolysaccharide export system permease LptF/LptG AM338_21035 PF03739 Lipopolysaccharide export system permease LptF/LptG AM338_21040 PF05872 Bacterial protein of unknown function (DUF853) AM338_21045 PF00107 Zinc-binding dehydrogenase AM338_21045 PF08240 Alcohol dehydrogenase GroES-like domain AM338_21055 PF13356 Arm DNA-binding domain AM338_21055 PF00589 Phage integrase family AM338_21120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_21135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_21150 PF01695 IstB-like ATP binding protein AM338_21155 PF00440 Bacterial regulatory proteins, tetR family AM338_21155 PF16925 Tetracyclin repressor-like, C-terminal domain AM338_21165 PF10011 Predicted membrane protein (DUF2254) AM338_21175 PF02028 BCCT, betaine/carnitine/choline family transporter AM338_21180 PF13276 HTH-like domain AM338_21180 PF13333 Integrase core domain AM338_21180 PF00665 Integrase core domain AM338_21185 PF03279 Bacterial lipid A biosynthesis acyltransferase AM338_21190 PF04393 Protein of unknown function (DUF535) AM338_21195 PF00534 Glycosyl transferases group 1 AM338_21195 PF13439 Glycosyltransferase Family 4 AM338_21200 PF01522 Polysaccharide deacetylase AM338_21215 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_21230 PF00005 ABC transporter AM338_21235 PF01032 FecCD transport family AM338_21240 PF01032 FecCD transport family AM338_21245 PF01497 Periplasmic binding protein AM338_21250 PF00593 TonB dependent receptor AM338_21250 PF07660 Secretin and TonB N terminus short domain AM338_21250 PF07715 TonB-dependent Receptor Plug Domain AM338_21255 PF16220 Domain of unknown function (DUF4880) AM338_21255 PF04773 FecR protein AM338_21260 PF04542 Sigma-70 region 2 AM338_21260 PF08281 Sigma-70, region 4 AM338_21285 PF13737 Transposase DDE domain AM338_21300 PF03050 Transposase IS66 family AM338_21300 PF13817 IS66 C-terminal element AM338_21300 PF13007 Transposase C of IS166 homeodomain AM338_21300 PF13005 zinc-finger binding domain of transposase IS66 AM338_21305 PF05717 IS66 Orf2 like protein AM338_21325 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase AM338_21335 PF06178 Oligogalacturonate-specific porin protein (KdgM) AM338_21360 PF02447 GntP family permease AM338_21370 PF03786 D-mannonate dehydratase (UxuA) AM338_21375 PF01232 Mannitol dehydrogenase Rossmann domain AM338_21375 PF08125 Mannitol dehydrogenase C-terminal domain AM338_21385 PF00392 Bacterial regulatory proteins, gntR family AM338_21385 PF07729 FCD domain AM338_21400 PF04965 Gene 25-like lysozyme AM338_21405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_21405 PF03466 LysR substrate binding domain AM338_21410 PF01979 Amidohydrolase family AM338_21415 PF07670 Nucleoside recognition AM338_21420 PF07670 Nucleoside recognition AM338_21425 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AM338_21430 PF06779 Uncharacterised MFS-type transporter YbfB AM338_21435 PF06977 SdiA-regulated AM338_21440 PF11823 Protein of unknown function (DUF3343) AM338_21445 PF01869 BadF/BadG/BcrA/BcrD ATPase family AM338_21450 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AM338_21455 PF04286 Protein of unknown function (DUF445) AM338_21460 PF07690 Major Facilitator Superfamily AM338_21480 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM338_21480 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM338_21485 PF04328 Selenoprotein, putative AM338_21490 PF02554 Carbon starvation protein CstA AM338_21490 PF13722 5TM C-terminal transporter carbon starvation CstA AM338_21500 PF02203 Tar ligand binding domain homologue AM338_21500 PF00672 HAMP domain AM338_21500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM338_21505 PF07690 Major Facilitator Superfamily AM338_21510 PF00392 Bacterial regulatory proteins, gntR family AM338_21510 PF07729 FCD domain AM338_21515 PF08240 Alcohol dehydrogenase GroES-like domain AM338_21515 PF00107 Zinc-binding dehydrogenase AM338_21520 PF00884 Sulfatase AM338_21525 PF10696 Protein of unknown function (DUF2501) AM338_21530 PF01695 IstB-like ATP binding protein AM338_21535 PF17948 DnaT DNA-binding domain AM338_21540 PF12821 Threonine/Serine exporter, ThrE AM338_21545 PF06738 Putative threonine/serine exporter AM338_21550 PF00196 Bacterial regulatory proteins, luxR family AM338_21555 PF00196 Bacterial regulatory proteins, luxR family AM338_21560 PF06276 Ferric iron reductase FhuF-like transporter AM338_21560 PF11575 FhuF 2Fe-2S C-terminal domain AM338_21565 PF07256 Protein of unknown function (DUF1435) AM338_21585 PF08468 Methyltransferase small domain N-terminal AM338_21585 PF05175 Methyltransferase small domain AM338_21590 PF03603 DNA polymerase III psi subunit AM338_21595 PF00583 Acetyltransferase (GNAT) family AM338_21600 PF13419 Haloacid dehalogenase-like hydrolase AM338_21605 PF16658 Class II release factor RF3, C-terminal domain AM338_21605 PF00009 Elongation factor Tu GTP binding domain AM338_21605 PF03144 Elongation factor Tu domain 2 AM338_21610 PF04972 BON domain AM338_21615 PF07043 Protein of unknown function (DUF1328) AM338_21620 PF01734 Patatin-like phospholipase AM338_21625 PF01026 TatD related DNase AM338_21630 PF04055 Radical SAM superfamily AM338_21635 PF11230 Protein of unknown function (DUF3029) AM338_21640 PF01791 DeoC/LacD family aldolase AM338_21645 PF00591 Glycosyl transferase family, a/b domain AM338_21645 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AM338_21645 PF02885 Glycosyl transferase family, helical bundle domain AM338_21650 PF01676 Metalloenzyme superfamily AM338_21655 PF01048 Phosphorylase superfamily AM338_21660 PF10437 Bacterial lipoate protein ligase C-terminus AM338_21660 PF03099 Biotin/lipoate A/B protein ligase family AM338_21665 PF10144 Bacterial virulence factor haemolysin AM338_21670 PF18429 Domain of unknown function (DUF5609) AM338_21675 PF18073 Rubredoxin metal binding domain AM338_21680 PF01381 Helix-turn-helix AM338_21680 PF13521 AAA domain AM338_21685 PF12848 ABC transporter AM338_21685 PF00005 ABC transporter AM338_21695 PF01464 Transglycosylase SLT domain AM338_21695 PF14718 Soluble lytic murein transglycosylase L domain AM338_21700 PF01371 Trp repressor protein AM338_21705 PF01931 Protein of unknown function DUF84 AM338_21710 PF00300 Histidine phosphatase superfamily (branch 1) AM338_21715 PF12833 Helix-turn-helix domain AM338_21715 PF06445 GyrI-like small molecule binding domain AM338_21720 PF05981 CreA protein AM338_21725 PF00072 Response regulator receiver domain AM338_21725 PF00486 Transcriptional regulatory protein, C terminal AM338_21730 PF00672 HAMP domain AM338_21730 PF00512 His Kinase A (phospho-acceptor) domain AM338_21730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_21735 PF06123 Inner membrane protein CreD AM338_21740 PF00486 Transcriptional regulatory protein, C terminal AM338_21740 PF00072 Response regulator receiver domain AM338_21750 PF00588 SpoU rRNA Methylase family AM338_21755 PF08254 Threonine leader peptide AM338_21760 PF00696 Amino acid kinase family AM338_21760 PF01842 ACT domain AM338_21760 PF13840 ACT domain AM338_21760 PF00742 Homoserine dehydrogenase AM338_21760 PF03447 Homoserine dehydrogenase, NAD binding domain AM338_21765 PF08544 GHMP kinases C terminal AM338_21765 PF00288 GHMP kinases N terminal domain AM338_21770 PF14821 Threonine synthase N terminus AM338_21770 PF00291 Pyridoxal-phosphate dependent enzyme AM338_21775 PF10697 Protein of unknown function (DUF2502) AM338_21780 PF03883 Peroxide stress protein YaaA AM338_21785 PF01235 Sodium:alanine symporter family AM338_21790 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM338_21795 PF00994 Probable molybdopterin binding domain AM338_21800 PF01184 GPR1/FUN34/yaaH family AM338_21805 PF13099 Domain of unknown function (DUF3944) AM338_21805 PF03981 Ubiquinol-cytochrome C chaperone AM338_21810 PF10807 Protein of unknown function (DUF2541) AM338_21815 PF00012 Hsp70 protein AM338_21820 PF00684 DnaJ central domain AM338_21820 PF01556 DnaJ C terminal domain AM338_21820 PF00226 DnaJ domain AM338_21825 PF01609 Transposase DDE domain AM338_21830 PF01848 Hok/gef family AM338_21840 PF06965 Na+/H+ antiporter 1 AM338_21845 PF03466 LysR substrate binding domain AM338_21845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_21865 PF01649 Ribosomal protein S20 AM338_21870 PF10837 Protein of unknown function (DUF2575) AM338_21875 PF01687 Riboflavin kinase AM338_21875 PF06574 FAD synthetase AM338_21880 PF08264 Anticodon-binding domain of tRNA AM338_21880 PF00133 tRNA synthetases class I (I, L, M and V) AM338_21880 PF06827 Zinc finger found in FPG and IleRS AM338_21885 PF01252 Signal peptidase (SPase) II AM338_21890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM338_21895 PF02401 LytB protein AM338_21900 PF01156 Inosine-uridine preferring nucleoside hydrolase AM338_21905 PF01113 Dihydrodipicolinate reductase, N-terminus AM338_21905 PF05173 Dihydrodipicolinate reductase, C-terminus AM338_21915 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM338_21915 PF00117 Glutamine amidotransferase class-I AM338_21920 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM338_21920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM338_21920 PF02142 MGS-like domain AM338_21930 PF07180 CaiF/GrlA transcriptional regulator AM338_21935 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_21940 PF00378 Enoyl-CoA hydratase/isomerase AM338_21945 PF00501 AMP-binding enzyme AM338_21945 PF13193 AMP-binding enzyme C-terminal domain AM338_21950 PF02515 CoA-transferase family III AM338_21955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM338_21955 PF02770 Acyl-CoA dehydrogenase, middle domain AM338_21955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM338_21960 PF02028 BCCT, betaine/carnitine/choline family transporter AM338_21965 PF01012 Electron transfer flavoprotein domain AM338_21970 PF00766 Electron transfer flavoprotein FAD-binding domain AM338_21970 PF01012 Electron transfer flavoprotein domain AM338_21975 PF01494 FAD binding domain AM338_21985 PF00083 Sugar (and other) transporter AM338_21990 PF02525 Flavodoxin-like fold AM338_21995 PF00999 Sodium/hydrogen exchanger family AM338_21995 PF02254 TrkA-N domain AM338_22000 PF00186 Dihydrofolate reductase AM338_22005 PF00149 Calcineurin-like phosphoesterase AM338_22010 PF04379 ApaG domain AM338_22015 PF00398 Ribosomal RNA adenine dimethylase AM338_22020 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM338_22025 PF09312 SurA N-terminal domain AM338_22025 PF00639 PPIC-type PPIASE domain AM338_22030 PF03968 OstA-like protein AM338_22030 PF04453 LPS transport system D AM338_22035 PF00226 DnaJ domain AM338_22035 PF05099 Tellurite resistance protein TerB AM338_22045 PF00849 RNA pseudouridylate synthase AM338_22050 PF12137 RNA polymerase recycling family C-terminal AM338_22050 PF00176 SNF2 family N-terminal domain AM338_22050 PF00271 Helicase conserved C-terminal domain AM338_22050 PF18339 RapA N-terminal Tudor like domain 1 AM338_22050 PF18337 RapA N-terminal Tudor like domain AM338_22055 PF03104 DNA polymerase family B, exonuclease domain AM338_22055 PF00136 DNA polymerase family B AM338_22060 PF00596 Class II Aldolase and Adducin N-terminal domain AM338_22065 PF02610 L-arabinose isomerase AM338_22065 PF11762 L-arabinose isomerase C-terminal domain AM338_22070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_22080 PF02311 AraC-like ligand binding domain AM338_22080 PF12833 Helix-turn-helix domain AM338_22085 PF09335 SNARE associated Golgi protein AM338_22090 PF00005 ABC transporter AM338_22095 PF00528 Binding-protein-dependent transport system inner membrane component AM338_22105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_22105 PF12793 Sugar transport-related sRNA regulator N-term AM338_22115 PF07690 Major Facilitator Superfamily AM338_22120 PF00694 Aconitase C-terminal domain AM338_22125 PF00330 Aconitase family (aconitate hydratase) AM338_22130 PF00180 Isocitrate/isopropylmalate dehydrogenase AM338_22135 PF00682 HMGL-like AM338_22135 PF08502 LeuA allosteric (dimerisation) domain AM338_22140 PF08054 Leucine operon leader peptide AM338_22145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_22145 PF03466 LysR substrate binding domain AM338_22150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_22150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_22150 PF00205 Thiamine pyrophosphate enzyme, central domain AM338_22155 PF10369 Small subunit of acetolactate synthase AM338_22165 PF00356 Bacterial regulatory proteins, lacI family AM338_22165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM338_22175 PF02381 MraZ protein, putative antitoxin-like AM338_22180 PF01795 MraW methylase family AM338_22185 PF04999 Cell division protein FtsL AM338_22190 PF00905 Penicillin binding protein transpeptidase domain AM338_22190 PF03717 Penicillin-binding Protein dimerisation domain AM338_22195 PF02875 Mur ligase family, glutamate ligase domain AM338_22195 PF08245 Mur ligase middle domain AM338_22195 PF01225 Mur ligase family, catalytic domain AM338_22200 PF01225 Mur ligase family, catalytic domain AM338_22200 PF08245 Mur ligase middle domain AM338_22200 PF02875 Mur ligase family, glutamate ligase domain AM338_22205 PF00953 Glycosyl transferase family 4 AM338_22205 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AM338_22210 PF02875 Mur ligase family, glutamate ligase domain AM338_22210 PF08245 Mur ligase middle domain AM338_22215 PF01098 Cell cycle protein AM338_22220 PF04101 Glycosyltransferase family 28 C-terminal domain AM338_22220 PF03033 Glycosyltransferase family 28 N-terminal domain AM338_22225 PF08245 Mur ligase middle domain AM338_22225 PF01225 Mur ligase family, catalytic domain AM338_22225 PF02875 Mur ligase family, glutamate ligase domain AM338_22230 PF01820 D-ala D-ala ligase N-terminus AM338_22230 PF07478 D-ala D-ala ligase C-terminus AM338_22235 PF03799 Cell division protein FtsQ AM338_22235 PF08478 POTRA domain, FtsQ-type AM338_22240 PF02491 SHS2 domain inserted in FTSA AM338_22245 PF12327 FtsZ family, C-terminal domain AM338_22245 PF00091 Tubulin/FtsZ family, GTPase domain AM338_22250 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM338_22255 PF06558 Secretion monitor precursor protein (SecM) AM338_22260 PF02810 SEC-C motif AM338_22260 PF07517 SecA DEAD-like domain AM338_22260 PF01043 SecA preprotein cross-linking domain AM338_22260 PF07516 SecA Wing and Scaffold domain AM338_22265 PF00293 NUDIX domain AM338_22270 PF03884 DNA gyrase inhibitor YacG AM338_22275 PF07072 Cell division protein AM338_22280 PF01121 Dephospho-CoA kinase AM338_22285 PF00478 IMP dehydrogenase / GMP reductase domain AM338_22290 PF00482 Type II secretion system (T2SS), protein F AM338_22295 PF00437 Type II/IV secretion system protein AM338_22295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM338_22300 PF07963 Prokaryotic N-terminal methylation motif AM338_22310 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM338_22310 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM338_22315 PF01510 N-acetylmuramoyl-L-alanine amidase AM338_22320 PF17113 Regulatory signalling modulator protein AmpE AM338_22325 PF00324 Amino acid permease AM338_22330 PF07729 FCD domain AM338_22330 PF00392 Bacterial regulatory proteins, gntR family AM338_22340 PF17831 Pyruvate dehydrogenase E1 component middle domain AM338_22340 PF00456 Transketolase, thiamine diphosphate binding domain AM338_22345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM338_22345 PF00364 Biotin-requiring enzyme AM338_22345 PF02817 e3 binding domain AM338_22350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM338_22350 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_22355 PF11737 Protein of unknown function (DUF3300) AM338_22365 PF00330 Aconitase family (aconitate hydratase) AM338_22365 PF11791 Aconitate B N-terminal domain AM338_22365 PF06434 Aconitate hydratase 2 N-terminus AM338_22370 PF06062 Uncharacterised protein family (UPF0231) AM338_22375 PF02675 S-adenosylmethionine decarboxylase AM338_22380 PF17284 Spermidine synthase tetramerisation domain AM338_22385 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) AM338_22390 PF00394 Multicopper oxidase AM338_22390 PF07731 Multicopper oxidase AM338_22390 PF07732 Multicopper oxidase AM338_22395 PF01011 PQQ enzyme repeat AM338_22400 PF00156 Phosphoribosyl transferase domain AM338_22405 PF00484 Carbonic anhydrase AM338_22410 PF00005 ABC transporter AM338_22415 PF01061 ABC-2 type transporter AM338_22420 PF03610 PTS system fructose IIA component AM338_22425 PF01522 Polysaccharide deacetylase AM338_22430 PF02261 Aspartate decarboxylase AM338_22445 PF04754 Putative transposase, YhgA-like AM338_22450 PF02569 Pantoate-beta-alanine ligase AM338_22455 PF02548 Ketopantoate hydroxymethyltransferase AM338_22460 PF00419 Fimbrial protein AM338_22465 PF00419 Fimbrial protein AM338_22470 PF00419 Fimbrial protein AM338_22475 PF00419 Fimbrial protein AM338_22480 PF13953 PapC C-terminal domain AM338_22480 PF00577 Outer membrane usher protein AM338_22480 PF13954 PapC N-terminal domain AM338_22485 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_22485 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_22490 PF00419 Fimbrial protein AM338_22495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM338_22500 PF12626 Polymerase A arginine-rich C-terminus AM338_22500 PF12627 Probable RNA and SrmB- binding site of polymerase A AM338_22500 PF01743 Poly A polymerase head domain AM338_22505 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM338_22510 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM338_22515 PF17746 SfsA N-terminal OB domain AM338_22515 PF03749 Sugar fermentation stimulation protein RE domain AM338_22520 PF02834 LigT like Phosphoesterase AM338_22525 PF00271 Helicase conserved C-terminal domain AM338_22525 PF00270 DEAD/DEAH box helicase AM338_22525 PF08482 ATP-dependent helicase C-terminal AM338_22525 PF04408 Helicase associated domain (HA2) AM338_22535 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal AM338_22535 PF00905 Penicillin binding protein transpeptidase domain AM338_22535 PF14814 Bifunctional transglycosylase second domain AM338_22535 PF00912 Transglycosylase AM338_22540 PF07715 TonB-dependent Receptor Plug Domain AM338_22540 PF00593 TonB dependent receptor AM338_22545 PF00005 ABC transporter AM338_22550 PF01497 Periplasmic binding protein AM338_22555 PF01032 FecCD transport family AM338_22560 PF00202 Aminotransferase class-III AM338_22565 PF00654 Voltage gated chloride channel AM338_22570 PF01521 Iron-sulphur cluster biosynthesis AM338_22575 PF03458 UPF0126 domain AM338_22580 PF01497 Periplasmic binding protein AM338_22585 PF01048 Phosphorylase superfamily AM338_22590 PF13286 Phosphohydrolase-associated domain AM338_22590 PF01966 HD domain AM338_22600 PF00595 PDZ domain AM338_22605 PF05651 Putative sugar diacid recognition AM338_22605 PF17853 GGDEF-like domain AM338_22605 PF13556 PucR C-terminal helix-turn-helix domain AM338_22610 PF11944 Protein of unknown function (DUF3461) AM338_22615 PF00149 Calcineurin-like phosphoesterase AM338_22620 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_22620 PF14602 Hexapeptide repeat of succinyl-transferase AM338_22620 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM338_22625 PF01909 Nucleotidyltransferase domain AM338_22625 PF08335 GlnD PII-uridylyltransferase AM338_22625 PF01966 HD domain AM338_22625 PF01842 ACT domain AM338_22630 PF00557 Metallopeptidase family M24 AM338_22640 PF00318 Ribosomal protein S2 AM338_22650 PF00889 Elongation factor TS AM338_22655 PF00696 Amino acid kinase family AM338_22660 PF01765 Ribosome recycling factor AM338_22665 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM338_22665 PF13288 DXP reductoisomerase C-terminal domain AM338_22665 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM338_22670 PF01255 Putative undecaprenyl diphosphate synthase AM338_22680 PF02163 Peptidase family M50 AM338_22680 PF17820 PDZ domain AM338_22685 PF07244 Surface antigen variable number repeat AM338_22685 PF01103 Surface antigen AM338_22690 PF03938 Outer membrane protein (OmpH-like) AM338_22695 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_22695 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM338_22700 PF07977 FabA-like domain AM338_22705 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AM338_22705 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_22710 PF02684 Lipid-A-disaccharide synthetase AM338_22715 PF01351 Ribonuclease HII AM338_22720 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM338_22720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM338_22720 PF14579 Helix-hairpin-helix motif AM338_22720 PF02811 PHP domain AM338_22720 PF01336 OB-fold nucleic acid binding domain AM338_22725 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM338_22735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM338_22740 PF11734 TilS substrate C-terminal domain AM338_22740 PF09179 TilS substrate binding domain AM338_22740 PF01171 PP-loop family AM338_22745 PF07073 Modulator of Rho-dependent transcription termination (ROF) AM338_22750 PF06786 Uncharacterised protein family (UPF0253) AM338_22755 PF07152 YaeQ protein AM338_22760 PF00472 RF-1 domain AM338_22765 PF17185 NlpE C-terminal OB domain AM338_22765 PF04170 NlpE N-terminal domain AM338_22770 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AM338_22775 PF04073 Aminoacyl-tRNA editing domain AM338_22775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM338_22775 PF03129 Anticodon binding domain AM338_22780 PF18389 TrmO C-terminal domain AM338_22780 PF01980 tRNA-methyltransferase O AM338_22785 PF16358 RcsF lipoprotein AM338_22790 PF03180 NLPA lipoprotein AM338_22795 PF00528 Binding-protein-dependent transport system inner membrane component AM338_22800 PF00005 ABC transporter AM338_22800 PF09383 NIL domain AM338_22840 PF00248 Aldo/keto reductase family AM338_22845 PF03466 LysR substrate binding domain AM338_22845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_22850 PF03372 Endonuclease/Exonuclease/phosphatase family AM338_22855 PF08241 Methyltransferase domain AM338_22860 PF01464 Transglycosylase SLT domain AM338_22860 PF01476 LysM domain AM338_22865 PF16123 Hydroxyacylglutathione hydrolase C-terminus AM338_22865 PF00753 Metallo-beta-lactamase superfamily AM338_22870 PF08241 Methyltransferase domain AM338_22875 PF00075 RNase H AM338_22880 PF00929 Exonuclease AM338_22905 PF05638 Type VI secretion system effector, Hcp AM338_22930 PF10431 C-terminal, D2-small domain, of ClpB protein AM338_22930 PF00004 ATPase family associated with various cellular activities (AAA) AM338_22930 PF17871 AAA lid domain AM338_22930 PF07724 AAA domain (Cdc48 subfamily) AM338_22985 PF05638 Type VI secretion system effector, Hcp AM338_22995 PF04717 Type VI secretion system, phage-baseplate injector AM338_23010 PF13808 DDE_Tnp_1-associated AM338_23010 PF01609 Transposase DDE domain AM338_23015 PF00795 Carbon-nitrogen hydrolase AM338_23025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM338_23025 PF02770 Acyl-CoA dehydrogenase, middle domain AM338_23025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM338_23025 PF09317 Domain of unknown function (DUF1974) AM338_23030 PF13580 SIS domain AM338_23035 PF13230 Glutamine amidotransferases class-II AM338_23040 PF03734 L,D-transpeptidase catalytic domain AM338_23045 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ AM338_23050 PF04221 RelB antitoxin AM338_23055 PF00877 NlpC/P60 family AM338_23065 PF00771 FHIPEP family AM338_23070 PF13677 Membrane MotB of proton-channel complex MotA/MotB AM338_23070 PF00691 OmpA family AM338_23075 PF00817 impB/mucB/samB family AM338_23075 PF11799 impB/mucB/samB family C-terminal domain AM338_23075 PF11798 IMS family HHH motif AM338_23085 PF13957 Toxin YafO, type II toxin-antitoxin system AM338_23090 PF13673 Acetyltransferase (GNAT) domain AM338_23100 PF00472 RF-1 domain AM338_23105 PF01546 Peptidase family M20/M25/M40 AM338_23105 PF07687 Peptidase dimerisation domain AM338_23110 PF00156 Phosphoribosyl transferase domain AM338_23115 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AM338_23120 PF07417 Sigma factor-binding transcriptional regulator Crl AM338_23125 PF00267 Gram-negative porin AM338_23130 PF01472 PUA domain AM338_23130 PF00696 Amino acid kinase family AM338_23135 PF00171 Aldehyde dehydrogenase family AM338_23145 PF14659 Phage integrase, N-terminal SAM-like domain AM338_23145 PF13356 Arm DNA-binding domain AM338_23145 PF00589 Phage integrase family AM338_23190 PF09857 Putative toxin of bacterial toxin-antitoxin pair AM338_23200 PF00834 Ribulose-phosphate 3 epimerase family AM338_23205 PF03992 Antibiotic biosynthesis monooxygenase AM338_23210 PF01791 DeoC/LacD family aldolase AM338_23215 PF13407 Periplasmic binding protein domain AM338_23220 PF02653 Branched-chain amino acid transport system / permease component AM338_23225 PF02653 Branched-chain amino acid transport system / permease component AM338_23230 PF00005 ABC transporter AM338_23235 PF04198 Putative sugar-binding domain AM338_23240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM338_23240 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM338_23265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_23295 PF13817 IS66 C-terminal element AM338_23295 PF13005 zinc-finger binding domain of transposase IS66 AM338_23295 PF03050 Transposase IS66 family AM338_23295 PF13007 Transposase C of IS166 homeodomain AM338_23300 PF05717 IS66 Orf2 like protein AM338_23315 PF05321 Haemolysin expression modulating protein AM338_23425 PF06067 Domain of unknown function (DUF932) AM338_23435 PF03230 Antirestriction protein AM338_23440 PF04002 RadC-like JAB domain AM338_23445 PF06174 Protein of unknown function (DUF987) AM338_23455 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A AM338_23460 PF06755 CbtA_toxin of type IV toxin-antitoxin system AM338_23465 PF03466 LysR substrate binding domain AM338_23470 PF13478 XdhC Rossmann domain AM338_23470 PF02625 XdhC and CoxI family AM338_23475 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM338_23475 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM338_23480 PF00941 FAD binding domain in molybdopterin dehydrogenase AM338_23480 PF03450 CO dehydrogenase flavoprotein C-terminal domain AM338_23485 PF01799 [2Fe-2S] binding domain AM338_23485 PF00111 2Fe-2S iron-sulfur cluster binding domain AM338_23495 PF07274 Protein of unknown function (DUF1440) AM338_23505 PF03692 Putative zinc- or iron-chelating domain AM338_23520 PF15976 CS1-pili formation C-terminal AM338_23520 PF16967 E-set like domain AM338_23525 PF18649 EcpB C-terminal domain AM338_23530 PF16449 Fimbrillin MatB AM338_23535 PF00196 Bacterial regulatory proteins, luxR family AM338_23550 PF00444 Ribosomal protein L36 AM338_23555 PF01197 Ribosomal protein L31 AM338_23575 PF11924 Inverse autotransporter, beta-domain AM338_23580 PF13737 Transposase DDE domain AM338_23585 PF12833 Helix-turn-helix domain AM338_23590 PF04224 Protein of unknown function, DUF417 AM338_23595 PF07338 Protein of unknown function (DUF1471) AM338_23600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM338_23600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM338_23605 PF12833 Helix-turn-helix domain AM338_23605 PF12852 Cupin AM338_23610 PF02754 Cysteine-rich domain AM338_23615 PF02589 LUD domain AM338_23615 PF13183 4Fe-4S dicluster domain AM338_23615 PF11870 Domain of unknown function (DUF3390) AM338_23620 PF02589 LUD domain AM338_23640 PF05199 GMC oxidoreductase AM338_23640 PF00732 GMC oxidoreductase AM338_23645 PF00171 Aldehyde dehydrogenase family AM338_23650 PF00440 Bacterial regulatory proteins, tetR family AM338_23650 PF13977 BetI-type transcriptional repressor, C-terminal AM338_23660 PF02028 BCCT, betaine/carnitine/choline family transporter AM338_23675 PF00196 Bacterial regulatory proteins, luxR family AM338_23675 PF00563 EAL domain AM338_23680 PF03466 LysR substrate binding domain AM338_23680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_23685 PF06496 Protein of unknown function (DUF1097) AM338_23695 PF12796 Ankyrin repeats (3 copies) AM338_23700 PF11392 Protein of unknown function (DUF2877) AM338_23705 PF02629 CoA binding domain AM338_23705 PF00549 CoA-ligase AM338_23710 PF06545 Protein of unknown function (DUF1116) AM338_23720 PF00696 Amino acid kinase family AM338_23725 PF07969 Amidohydrolase family AM338_23730 PF08240 Alcohol dehydrogenase GroES-like domain AM338_23730 PF00107 Zinc-binding dehydrogenase AM338_23745 PF01810 LysE type translocator AM338_23750 PF07338 Protein of unknown function (DUF1471) AM338_23755 PF02954 Bacterial regulatory protein, Fis family AM338_23755 PF06506 Propionate catabolism activator AM338_23755 PF00158 Sigma-54 interaction domain AM338_23765 PF00285 Citrate synthase, C-terminal domain AM338_23770 PF03972 MmgE/PrpD family AM338_23775 PF13193 AMP-binding enzyme C-terminal domain AM338_23775 PF16177 Acetyl-coenzyme A synthetase N-terminus AM338_23775 PF00501 AMP-binding enzyme AM338_23780 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM338_23785 PF07969 Amidohydrolase family AM338_23790 PF03466 LysR substrate binding domain AM338_23790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_23795 PF00484 Carbonic anhydrase AM338_23800 PF02560 Cyanate lyase C-terminal domain AM338_23805 PF07690 Major Facilitator Superfamily AM338_23810 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_23810 PF12464 Maltose acetyltransferase AM338_23815 PF01306 LacY proton/sugar symporter AM338_23820 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM338_23820 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM338_23820 PF02929 Beta galactosidase small chain AM338_23820 PF16353 Domain of unknown function(DUF4981) AM338_23820 PF00703 Glycosyl hydrolases family 2 AM338_23830 PF00356 Bacterial regulatory proteins, lacI family AM338_23835 PF09339 IclR helix-turn-helix domain AM338_23835 PF01614 Bacterial transcriptional regulator AM338_23840 PF01494 FAD binding domain AM338_23845 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM338_23850 PF12697 Alpha/beta hydrolase family AM338_23855 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM338_23860 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AM338_23860 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM338_23865 PF07836 DmpG-like communication domain AM338_23865 PF00682 HMGL-like AM338_23870 PF07690 Major Facilitator Superfamily AM338_23875 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AM338_23880 PF00756 Putative esterase AM338_23885 PF00107 Zinc-binding dehydrogenase AM338_23885 PF08240 Alcohol dehydrogenase GroES-like domain AM338_23890 PF02583 Metal-sensitive transcriptional repressor AM338_23900 PF00132 Bacterial transferase hexapeptide (six repeats) AM338_23905 PF00535 Glycosyl transferase family 2 AM338_23910 PF02585 GlcNAc-PI de-N-acetylase AM338_23930 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM338_23935 PF00005 ABC transporter AM338_23940 PF00528 Binding-protein-dependent transport system inner membrane component AM338_23945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AM338_23950 PF00490 Delta-aminolevulinic acid dehydratase AM338_23960 PF03212 Pertactin AM338_23960 PF03797 Autotransporter beta-domain AM338_23965 PF15977 Winged helix-turn-helix DNA binding AM338_23970 PF00144 Beta-lactamase AM338_23980 PF05992 SbmA/BacA-like family AM338_23985 PF07759 Protein of unknown function (DUF1615) AM338_23990 PF10954 Protein of unknown function (DUF2755) AM338_23995 PF10953 Protein of unknown function (DUF2754) AM338_24000 PF07478 D-ala D-ala ligase C-terminus AM338_24000 PF01820 D-ala D-ala ligase N-terminus AM338_24010 PF10796 Sigma-S stabilisation anti-adaptor protein AM338_24015 PF00245 Alkaline phosphatase AM338_24020 PF07769 psiF repeat AM338_24025 PF05230 MASE2 domain AM338_24025 PF00990 Diguanylate cyclase, GGDEF domain AM338_24030 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM338_24030 PF03807 NADP oxidoreductase coenzyme F420-dependent AM338_24035 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AM338_24040 PF01202 Shikimate kinase AM338_24045 PF16362 YaiA protein AM338_24055 PF07302 AroM protein AM338_24060 PF06865 Pyrimidine/purine nucleoside phosphorylase AM338_24070 PF10971 Protein of unknown function (DUF2773) AM338_24075 PF04381 Putative exonuclease, RdgC AM338_24080 PF00480 ROK family AM338_24085 PF07690 Major Facilitator Superfamily AM338_24090 PF13476 AAA domain AM338_24095 PF12320 Type 5 capsule protein repressor C-terminal domain AM338_24095 PF00149 Calcineurin-like phosphoesterase AM338_24100 PF00486 Transcriptional regulatory protein, C terminal AM338_24100 PF00072 Response regulator receiver domain AM338_24105 PF00989 PAS fold AM338_24105 PF11808 Phosphate regulon sensor protein PhoR AM338_24105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_24105 PF00512 His Kinase A (phospho-acceptor) domain AM338_24110 PF05525 Branched-chain amino acid transport protein AM338_24115 PF00324 Amino acid permease AM338_24120 PF00128 Alpha amylase, catalytic domain AM338_24120 PF02903 Alpha amylase, N-terminal ig-like domain AM338_24125 PF04336 Acyl carrier protein phosphodiesterase AM338_24130 PF02547 Queuosine biosynthesis protein AM338_24135 PF01702 Queuine tRNA-ribosyltransferase AM338_24140 PF02699 Preprotein translocase subunit AM338_24145 PF02355 Protein export membrane protein AM338_24145 PF07549 SecD/SecF GG Motif AM338_24145 PF13721 SecD export protein N-terminal TM region AM338_24150 PF02355 Protein export membrane protein AM338_24150 PF07549 SecD/SecF GG Motif AM338_24155 PF01844 HNH endonuclease AM338_24160 PF03502 Nucleoside-specific channel-forming protein, Tsx AM338_24165 PF11622 Protein of unknown function (DUF3251) AM338_24170 PF03477 ATP cone domain AM338_24175 PF01872 RibD C-terminal domain AM338_24175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM338_24180 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM338_24185 PF01029 NusB family AM338_24190 PF00586 AIR synthase related protein, N-terminal domain AM338_24190 PF02769 AIR synthase related protein, C-terminal domain AM338_24195 PF04608 Phosphatidylglycerophosphatase A AM338_24200 PF00248 Aldo/keto reductase family AM338_24205 PF02780 Transketolase, C-terminal domain AM338_24205 PF02779 Transketolase, pyrimidine binding domain AM338_24205 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM338_24210 PF00348 Polyprenyl synthetase AM338_24215 PF02609 Exonuclease VII small subunit AM338_24220 PF02568 Thiamine biosynthesis protein (ThiI) AM338_24220 PF02926 THUMP domain AM338_24225 PF01965 DJ-1/PfpI family AM338_24230 PF08546 Ketopantoate reductase PanE/ApbA C terminal AM338_24230 PF02558 Ketopantoate reductase PanE/ApbA AM338_24235 PF04461 Protein of unknown function (DUF520) AM338_24240 PF07690 Major Facilitator Superfamily AM338_24245 PF01040 UbiA prenyltransferase family AM338_24250 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AM338_24255 PF00510 Cytochrome c oxidase subunit III AM338_24260 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM338_24265 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM338_24265 PF06481 COX Aromatic Rich Motif AM338_24270 PF07690 Major Facilitator Superfamily AM338_24275 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AM338_24275 PF03923 Uncharacterized lipoprotein AM338_24285 PF01722 BolA-like protein AM338_24295 PF05697 Bacterial trigger factor protein (TF) AM338_24295 PF05698 Bacterial trigger factor protein (TF) C-terminus AM338_24295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM338_24300 PF00574 Clp protease AM338_24305 PF06689 ClpX C4-type zinc finger AM338_24305 PF07724 AAA domain (Cdc48 subfamily) AM338_24305 PF10431 C-terminal, D2-small domain, of ClpB protein AM338_24310 PF00004 ATPase family associated with various cellular activities (AAA) AM338_24310 PF05362 Lon protease (S16) C-terminal proteolytic domain AM338_24310 PF02190 ATP-dependent protease La (LON) substrate-binding domain AM338_24315 PF00216 Bacterial DNA-binding protein AM338_24320 PF13145 PPIC-type PPIASE domain AM338_24335 PF06508 Queuosine biosynthesis protein QueC AM338_24340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM338_24340 PF12793 Sugar transport-related sRNA regulator N-term AM338_24350 PF01037 Lrp/AsnC ligand binding domain AM338_24350 PF13404 AsnC-type helix-turn-helix domain AM338_24355 PF00664 ABC transporter transmembrane region AM338_24355 PF00005 ABC transporter AM338_24360 PF00664 ABC transporter transmembrane region AM338_24360 PF00005 ABC transporter AM338_24365 PF00543 Nitrogen regulatory protein P-II AM338_24370 PF00909 Ammonium Transporter Family AM338_24380 PF09619 Type III secretion system lipoprotein chaperone (YscW) AM338_24385 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM338_24395 PF07237 Protein of unknown function (DUF1428) AM338_24400 PF00563 EAL domain AM338_24400 PF12792 CSS motif domain associated with EAL AM338_24405 PF10777 Inner membrane protein YlaC AM338_24410 PF14602 Hexapeptide repeat of succinyl-transferase AM338_24410 PF12464 Maltose acetyltransferase AM338_24415 PF05321 Haemolysin expression modulating protein AM338_24420 PF10757 Biofilm formation regulator YbaJ AM338_24425 PF00873 AcrB/AcrD/AcrF family AM338_24430 PF00529 HlyD membrane-fusion protein of T1SS AM338_24430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM338_24435 PF00440 Bacterial regulatory proteins, tetR family AM338_24435 PF08361 MAATS-type transcriptional repressor, C-terminal region AM338_24445 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM338_24445 PF12795 Mechanosensitive ion channel porin domain AM338_24445 PF00924 Mechanosensitive ion channel AM338_24450 PF10689 Protein of unknown function (DUF2496) AM338_24455 PF07445 Primosomal replication protein priC AM338_24460 PF04304 Protein of unknown function (DUF454) AM338_24470 PF00156 Phosphoribosyl transferase domain AM338_24475 PF12170 DNA polymerase III tau subunit V interacting with alpha AM338_24475 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM338_24475 PF12169 DNA polymerase III subunits gamma and tau domain III AM338_24480 PF02575 YbaB/EbfC DNA-binding family AM338_24485 PF13662 Toprim domain AM338_24485 PF02132 RecR protein AM338_24490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM338_24490 PF00183 Hsp90 protein AM338_24500 PF05191 Adenylate kinase, active site lid AM338_24505 PF00762 Ferrochelatase AM338_24510 PF07859 alpha/beta hydrolase fold AM338_24515 PF00294 pfkB family carbohydrate kinase AM338_24520 PF00999 Sodium/hydrogen exchanger family AM338_24520 PF02254 TrkA-N domain AM338_24525 PF07690 Major Facilitator Superfamily AM338_24535 PF02872 5'-nucleotidase, C-terminal domain AM338_24535 PF00149 Calcineurin-like phosphoesterase AM338_24540 PF04073 Aminoacyl-tRNA editing domain AM338_24550 PF01963 TraB family AM338_24560 PF01381 Helix-turn-helix AM338_24565 PF00403 Heavy-metal-associated domain AM338_24570 PF04960 Glutaminase AM338_24575 PF13520 Amino acid permease AM338_24580 PF13411 MerR HTH family regulatory protein AM338_24585 PF01957 NfeD-like C-terminal, partner-binding AM338_24590 PF01145 SPFH domain / Band 7 family AM338_24590 PF16200 C-terminal region of band_7 AM338_24595 PF00005 ABC transporter AM338_24600 PF03649 Uncharacterised protein family (UPF0014) AM338_24605 PF00085 Thioredoxin AM338_24610 PF00106 short chain dehydrogenase AM338_24615 PF13472 GDSL-like Lipase/Acylhydrolase family AM338_24620 PF00005 ABC transporter AM338_24635 PF15631 NTF2 fold immunity protein AM338_24660 PF03466 LysR substrate binding domain AM338_24660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM338_24665 PF04115 Ureidoglycolate lyase AM338_24670 PF01614 Bacterial transcriptional regulator AM338_24670 PF09339 IclR helix-turn-helix domain AM338_24675 PF00205 Thiamine pyrophosphate enzyme, central domain AM338_24675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM338_24675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM338_24680 PF01261 Xylose isomerase-like TIM barrel AM338_24685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM338_24685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM338_24690 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM338_24695 PF01979 Amidohydrolase family AM338_24700 PF00860 Permease family AM338_24705 PF02595 Glycerate kinase family AM338_24710 PF05899 Protein of unknown function (DUF861) AM338_24710 PF07883 Cupin domain AM338_24715 PF01546 Peptidase family M20/M25/M40 AM338_24720 PF02615 Malate/L-lactate dehydrogenase AM338_24725 PF02629 CoA binding domain AM338_24725 PF00549 CoA-ligase AM338_24730 PF06545 Protein of unknown function (DUF1116) AM338_24735 PF11392 Protein of unknown function (DUF2877) AM338_24740 PF00696 Amino acid kinase family AM338_24745 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM338_24745 PF02222 ATP-grasp domain AM338_24750 PF00731 AIR carboxylase AM338_24760 PF12850 Calcineurin-like phosphoesterase superfamily domain AM338_24765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM338_24770 PF09190 DALR domain AM338_24770 PF01406 tRNA synthetases class I (C) catalytic domain AM338_24775 PF04307 LexA-binding, inner membrane-associated putative hydrolase AM338_24785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM338_24785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM338_24790 PF00419 Fimbrial protein AM338_24795 PF02753 Pili assembly chaperone PapD, C-terminal domain AM338_24795 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM338_24800 PF00577 Outer membrane usher protein AM338_24800 PF13954 PapC N-terminal domain AM338_24800 PF13953 PapC C-terminal domain AM338_24805 PF00419 Fimbrial protein AM338_24810 PF00419 Fimbrial protein AM338_24815 PF00072 Response regulator receiver domain AM338_24815 PF00196 Bacterial regulatory proteins, luxR family AM338_24820 PF05818 Enterobacterial TraT complement resistance protein AM338_24830 PF07916 TraG-like protein, N-terminal region AM338_24835 PF06122 Conjugative relaxosome accessory transposon protein AM338_24850 PF13728 F plasmid transfer operon protein AM338_24855 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) AM338_24870 PF13728 F plasmid transfer operon protein AM338_24875 PF11100 Conjugal transfer protein TrbE AM338_24880 PF06986 Type-1V conjugative transfer system mating pair stabilisation AM338_24885 PF09673 Type-F conjugative transfer system pilin assembly protein AM338_24890 PF06834 TraU protein AM338_24895 PF12477 Sex factor F TraW protein N terminal AM338_24900 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) AM338_24905 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer AM338_24910 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM338_24915 PF09676 Type IV conjugative transfer system lipoprotein (TraV) AM338_24925 PF10894 Protein of unknown function (DUF2689) AM338_24930 PF07296 TraP protein AM338_24935 PF03743 Bacterial conjugation TrbI-like protein AM338_24940 PF06586 TraK protein AM338_24945 PF05309 TraE protein AM338_24950 PF07178 TraL protein AM338_24955 PF05513 TraA AM338_24960 PF05509 TraY domain AM338_24970 PF05261 TraM protein, DNA-binding AM338_24975 PF01464 Transglycosylase SLT domain AM338_24980 PF06067 Domain of unknown function (DUF932) AM338_24995 PF01848 Hok/gef family AM338_25005 PF06952 PsiA protein AM338_25010 PF06290 Plasmid SOS inhibition protein (PsiB) AM338_25020 PF06006 Bacterial protein of unknown function (DUF905) AM338_25025 PF00436 Single-strand binding protein family AM338_25080 PF07128 Protein of unknown function (DUF1380) AM338_25085 PF03230 Antirestriction protein AM338_25100 PF07128 Protein of unknown function (DUF1380) AM338_25110 PF01555 DNA methylase AM338_25120 PF06924 Protein of unknown function (DUF1281) AM338_25130 PF18090 Centromere-binding protein HTH domain AM338_25130 PF02195 ParB-like nuclease domain AM338_25135 PF13614 AAA domain AM338_25140 PF01051 Initiator Replication protein AM338_25145 PF00589 Phage integrase family AM338_25150 PF01845 CcdB protein AM338_25155 PF07362 Post-segregation antitoxin CcdA AM338_25170 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AM338_25175 PF01850 PIN domain AM338_25180 PF02463 RecF/RecN/SMC N terminal domain AM338_25210 PF07715 TonB-dependent Receptor Plug Domain AM338_25210 PF00593 TonB dependent receptor AM338_25215 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM338_25220 PF06276 Ferric iron reductase FhuF-like transporter AM338_25220 PF04183 IucA / IucC family AM338_25230 PF04183 IucA / IucC family AM338_25230 PF06276 Ferric iron reductase FhuF-like transporter AM338_25240 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM338_25250 PF03952 Enolase, N-terminal domain AM338_25250 PF00113 Enolase, C-terminal TIM barrel domain AM338_25260 PF00950 ABC 3 transport family AM338_25265 PF00950 ABC 3 transport family AM338_25270 PF00005 ABC transporter AM338_25275 PF01297 Zinc-uptake complex component A periplasmic AM338_25315 PF01051 Initiator Replication protein AM338_25320 PF00589 Phage integrase family AM338_25350 PF07715 TonB-dependent Receptor Plug Domain AM338_25350 PF00593 TonB dependent receptor AM338_25365 PF01695 IstB-like ATP binding protein AM338_25370 PF00665 Integrase core domain AM338_25370 PF02796 Helix-turn-helix domain of resolvase AM338_25380 PF05717 IS66 Orf2 like protein AM338_25385 PF13610 DDE domain AM338_25395 PF00905 Penicillin binding protein transpeptidase domain AM338_25405 PF13610 DDE domain AM338_25415 PF02522 Aminoglycoside 3-N-acetyltransferase AM338_25430 PF13610 DDE domain AM338_25455 PF01526 Tn3 transposase DDE domain AM338_25455 PF13700 Domain of unknown function (DUF4158) AM338_25460 PF13610 DDE domain AM338_25495 PF00578 AhpC/TSA family AM338_25500 PF04205 FMN-binding domain AM338_25510 PF03239 Iron permease FTR1 family AM338_25515 PF10634 Fe2+ transport protein AM338_25525 PF00005 ABC transporter AM338_25525 PF12704 MacB-like periplasmic core domain AM338_25525 PF02687 FtsX-like permease family AM338_25530 PF12704 MacB-like periplasmic core domain AM338_25530 PF02687 FtsX-like permease family AM338_25530 PF00005 ABC transporter AM338_25535 PF02687 FtsX-like permease family AM338_25535 PF12704 MacB-like periplasmic core domain AM338_25535 PF00005 ABC transporter AM338_25550 PF00328 Histidine phosphatase superfamily (branch 2) AM338_25560 PF13610 DDE domain AM338_25575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_25610 PF03526 Colicin E1 (microcin) immunity protein AM338_25645 PF00593 TonB dependent receptor AM338_25645 PF07715 TonB-dependent Receptor Plug Domain AM338_25670 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_25680 PF13018 Extended Signal Peptide of Type V secretion system AM338_25680 PF03797 Autotransporter beta-domain AM338_25680 PF02395 Immunoglobulin A1 protease AM338_25695 PF00892 EamA-like transporter family AM338_25700 PF00155 Aminotransferase class I and II AM338_25710 PF01323 DSBA-like thioredoxin domain AM338_25715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM338_25720 PF00085 Thioredoxin AM338_25725 PF02627 Carboxymuconolactone decarboxylase family AM338_25745 PF13610 DDE domain AM338_25760 PF02909 Tetracyclin repressor-like, C-terminal domain AM338_25760 PF00440 Bacterial regulatory proteins, tetR family AM338_25765 PF07690 Major Facilitator Superfamily AM338_25770 PF00892 EamA-like transporter family AM338_25785 PF00239 Resolvase, N terminal domain AM338_25785 PF02796 Helix-turn-helix domain of resolvase AM338_25790 PF01526 Tn3 transposase DDE domain AM338_25790 PF13700 Domain of unknown function (DUF4158) AM338_25795 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AM338_25800 PF02517 CPBP intramembrane metalloprotease AM338_25810 PF02387 IncFII RepA protein family AM338_25815 PF08048 Tap RepA1 leader peptide AM338_25825 PF10723 Replication regulatory protein RepB AM338_25830 PF01548 Transposase AM338_25830 PF02371 Transposase IS116/IS110/IS902 family AM338_25860 PF05717 IS66 Orf2 like protein AM338_25880 PF03606 C4-dicarboxylate anaerobic carrier AM338_25885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM338_25885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM338_25890 PF00696 Amino acid kinase family AM338_25910 PF08048 Tap RepA1 leader peptide AM338_25920 PF10723 Replication regulatory protein RepB AM338_25925 PF01848 Hok/gef family AM338_25950 PF13817 IS66 C-terminal element AM338_25950 PF13005 zinc-finger binding domain of transposase IS66 AM338_25950 PF13007 Transposase C of IS166 homeodomain AM338_25950 PF03050 Transposase IS66 family AM338_25955 PF05717 IS66 Orf2 like protein AM338_25960 PF01527 Transposase AM338_25965 PF03400 IS1 transposase AM338_25980 PF12602 Fertility inhibition protein N terminal AM338_25980 PF04352 ProQ/FINO family AM338_25985 PF05857 TraX protein AM338_25990 PF18272 single-stranded DNA binding TraI N-terminal subdomain AM338_25990 PF18340 DNA relaxase TraI 2B/2B-like domain AM338_25990 PF08751 TrwC relaxase AM338_25990 PF07057 DNA helicase TraI AM338_25995 PF12615 F sex factor protein N terminal AM338_25995 PF10412 Type IV secretion-system coupling protein DNA-binding domain AM338_26000 PF13737 Transposase DDE domain AM338_26005 PF04411 PD-(D/E)XK nuclease superfamily AM338_26020 PF13737 Transposase DDE domain AM338_26095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_26110 PF01850 PIN domain AM338_26115 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AM338_26135 PF00589 Phage integrase family AM338_26145 PF01051 Initiator Replication protein AM338_26155 PF18607 ParA helix turn helix domain AM338_26155 PF13614 AAA domain AM338_26160 PF08775 ParB family AM338_26160 PF02195 ParB-like nuclease domain AM338_26165 PF13438 Domain of unknown function (DUF4113) AM338_26165 PF00817 impB/mucB/samB family AM338_26165 PF11799 impB/mucB/samB family C-terminal domain AM338_26170 PF00717 Peptidase S24-like AM338_26205 PF13737 Transposase DDE domain AM338_26215 PF13737 Transposase DDE domain AM338_26225 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AM338_26230 PF01636 Phosphotransferase enzyme family AM338_26240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM338_26260 PF13610 DDE domain AM338_26270 PF00186 Dihydrofolate reductase AM338_26280 PF01051 Initiator Replication protein AM338_26285 PF13610 DDE domain AM338_26295 PF00239 Resolvase, N terminal domain AM338_26295 PF02796 Helix-turn-helix domain of resolvase AM338_26315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM338_26315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM338_26315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM338_26315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM338_26320 PF00809 Pterin binding enzyme AM338_26340 PF13610 DDE domain AM338_26350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM338_26350 PF08447 PAS fold AM338_26355 PF01526 Tn3 transposase DDE domain AM338_26355 PF13700 Domain of unknown function (DUF4158) AM338_26370 PF13700 Domain of unknown function (DUF4158) AM338_26370 PF01526 Tn3 transposase DDE domain AM338_26385 PF13610 DDE domain AM338_26395 PF01526 Tn3 transposase DDE domain AM338_26395 PF13700 Domain of unknown function (DUF4158) AM338_26405 PF01751 Toprim domain AM338_26405 PF01131 DNA topoisomerase AM338_26410 PF00816 H-NS histone family AM338_26420 PF05321 Haemolysin expression modulating protein AM338_26535 PF07015 VirC1 protein AM338_26550 PF01848 Hok/gef family AM338_26565 PF02387 IncFII RepA protein family AM338_26580 PF01145 SPFH domain / Band 7 family AM338_26580 PF16200 C-terminal region of band_7 AM338_26680 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AM338_26700 PF03743 Bacterial conjugation TrbI-like protein AM338_26705 PF00437 Type II/IV secretion system protein AM338_26710 PF02534 Type IV secretory system Conjugative DNA transfer AM338_26730 PF00437 Type II/IV secretion system protein AM338_26755 PF04917 Bacterial shufflon protein, N-terminal constant region AM338_26760 PF04917 Bacterial shufflon protein, N-terminal constant region AM338_26765 PF04917 Bacterial shufflon protein, N-terminal constant region AM338_26770 PF04917 Bacterial shufflon protein, N-terminal constant region AM338_26775 PF00589 Phage integrase family AM338_26785 PF00565 Staphylococcal nuclease homologue