AM338_00020 SM00342 helix_turn_helix, arabinose operon control protein AM338_00035 SM00028 Tetratricopeptide repeats AM338_00045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_00045 SM00387 Histidine kinase-like ATPases AM338_00045 SM00388 His Kinase A (phosphoacceptor) domain AM338_00050 SM00448 cheY-homologous receiver domain AM338_00050 SM00862 Transcriptional regulatory protein, C terminal AM338_00140 SM00382 ATPases associated with a variety of cellular activities AM338_00255 SM00923 MbtH-like protein AM338_00260 SM00823 Phosphopantetheine attachment site AM338_00260 SM00824 Thioesterase AM338_00270 SM00382 ATPases associated with a variety of cellular activities AM338_00315 SM00822 AM338_00315 AM338_00345 SM00470 ParB-like nuclease domain AM338_00455 SM00764 Citrate lyase ligase C-terminal domain AM338_00460 SM00091 PAS domain AM338_00460 SM00387 Histidine kinase-like ATPases AM338_00465 SM00448 cheY-homologous receiver domain AM338_00485 SM00357 Cold shock protein domain AM338_00505 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_00535 SM00936 Penicillin-binding protein 5, C-terminal domain AM338_00565 SM00855 Phosphoglycerate mutase family AM338_00595 SM00671 Sel1-like repeats. AM338_00605 SM00271 DnaJ molecular chaperone homology domain AM338_00610 SM00671 Sel1-like repeats. AM338_00635 SM00382 ATPases associated with a variety of cellular activities AM338_00650 SM00062 Bacterial periplasmic substrate-binding proteins AM338_00660 SM00116 Domain in cystathionine beta-synthase and other proteins. AM338_00660 SM01091 Transporter associated domain AM338_00675 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_00840 SM00448 cheY-homologous receiver domain AM338_00840 SM00862 Transcriptional regulatory protein, C terminal AM338_00845 SM00387 Histidine kinase-like ATPases AM338_00845 SM00388 His Kinase A (phosphoacceptor) domain AM338_00930 SM00796 Allophanate hydrolase subunit 1 AM338_00935 SM00797 Allophanate hydrolase subunit 2 AM338_00945 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM338_00945 SM01232 AM338_00945 AM338_01010 SM00861 Transketolase, pyrimidine binding domain AM338_01025 SM00881 CoA binding domain AM338_01035 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_01035 SM00866 AM338_01035 AM338_01045 SM00872 Alpha mannosidase, middle domain AM338_01180 SM00855 Phosphoglycerate mutase family AM338_01205 SM00382 ATPases associated with a variety of cellular activities AM338_01235 SM00382 ATPases associated with a variety of cellular activities AM338_01290 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_01290 SM00876 Biotin and Thiamin Synthesis associated domain AM338_01310 SM00487 DEAD-like helicases superfamily AM338_01310 SM00490 helicase superfamily c-terminal domain AM338_01320 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_01325 SM00852 Probable molybdopterin binding domain AM338_01360 SM00155 Phospholipase D. Active site motifs. AM338_01385 SM00382 ATPases associated with a variety of cellular activities AM338_01400 SM00487 DEAD-like helicases superfamily AM338_01400 SM00490 helicase superfamily c-terminal domain AM338_01415 SM00487 DEAD-like helicases superfamily AM338_01415 SM00488 AM338_01415 AM338_01415 SM00491 AM338_01415 AM338_01440 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM338_01465 SM00382 ATPases associated with a variety of cellular activities AM338_01475 SM00062 Bacterial periplasmic substrate-binding proteins AM338_01475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM338_01520 SM00529 Helix-turn-helix diphteria tox regulatory element AM338_01535 SM00382 ATPases associated with a variety of cellular activities AM338_01570 SM00852 Probable molybdopterin binding domain AM338_01580 SM00382 ATPases associated with a variety of cellular activities AM338_01600 SM00052 Putative diguanylate phosphodiesterase AM338_01605 SM00267 diguanylate cyclase AM338_01610 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_01630 SM00936 Penicillin-binding protein 5, C-terminal domain AM338_01635 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_01635 SM01134 AM338_01635 AM338_01640 SM00014 Acid phosphatase homologues AM338_01715 SM00382 ATPases associated with a variety of cellular activities AM338_01740 SM00062 Bacterial periplasmic substrate-binding proteins AM338_01740 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM338_01755 SM00062 Bacterial periplasmic substrate-binding proteins AM338_01755 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM338_01760 SM00382 ATPases associated with a variety of cellular activities AM338_01775 SM00644 AM338_01775 AM338_01840 SM00382 ATPases associated with a variety of cellular activities AM338_01845 SM00357 Cold shock protein domain AM338_01930 SM00382 ATPases associated with a variety of cellular activities AM338_01930 SM01086 C-terminal, D2-small domain, of ClpB protein AM338_01940 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_01955 SM00382 ATPases associated with a variety of cellular activities AM338_01960 SM00382 ATPases associated with a variety of cellular activities AM338_01975 SM00344 helix_turn_helix ASNC type AM338_01980 SM00843 AM338_01980 AM338_01990 SM00382 ATPases associated with a variety of cellular activities AM338_02000 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_02085 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_02090 SM00411 bacterial (prokaryotic) histone like domain AM338_02095 SM00849 Metallo-beta-lactamase superfamily AM338_02100 SM00382 ATPases associated with a variety of cellular activities AM338_02175 SM00849 Metallo-beta-lactamase superfamily AM338_02240 SM00382 ATPases associated with a variety of cellular activities AM338_02255 SM00062 Bacterial periplasmic substrate-binding proteins AM338_02320 SM00981 AM338_02320 AM338_02325 SM00382 ATPases associated with a variety of cellular activities AM338_02400 SM00851 MGS-like domain AM338_02410 SM00881 CoA binding domain AM338_02415 SM00992 Hemimethylated DNA-binding protein YccV like AM338_02420 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AM338_02500 SM00226 Low molecular weight phosphatase family AM338_02530 SM00357 Cold shock protein domain AM338_02535 SM00357 Cold shock protein domain AM338_02560 SM00073 Histidine Phosphotransfer domain AM338_02560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_02560 SM00387 Histidine kinase-like ATPases AM338_02560 SM00388 His Kinase A (phosphoacceptor) domain AM338_02560 SM00448 cheY-homologous receiver domain AM338_02570 SM00448 cheY-homologous receiver domain AM338_02570 SM00862 Transcriptional regulatory protein, C terminal AM338_02595 SM00271 DnaJ molecular chaperone homology domain AM338_02635 SM00903 Flavin reductase like domain AM338_02740 SM00028 Tetratricopeptide repeats AM338_02745 SM00267 diguanylate cyclase AM338_02780 SM00481 DNA polymerase alpha chain like domain AM338_02810 SM00421 helix_turn_helix, Lux Regulon AM338_02845 SM00506 Appr-1"-p processing enzyme AM338_02850 SM00155 Phospholipase D. Active site motifs. AM338_02900 SM00450 Rhodanese Homology Domain AM338_02905 SM00867 YceI-like domain AM338_02985 SM00858 AM338_02985 AM338_03030 SM00047 Lysozyme subfamily 2 AM338_03045 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_03060 SM00363 S4 RNA-binding domain AM338_03090 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM338_03095 SM00822 AM338_03095 AM338_03105 SM00825 Beta-ketoacyl synthase AM338_03200 SM00257 Lysin motif AM338_03205 SM00487 DEAD-like helicases superfamily AM338_03205 SM00490 helicase superfamily c-terminal domain AM338_03205 SM00982 AM338_03205 AM338_03205 SM01058 CarD-like/TRCF domain AM338_03220 SM00382 ATPases associated with a variety of cellular activities AM338_03360 SM00507 HNH nucleases AM338_03440 SM00507 HNH nucleases AM338_03520 SM00232 JAB/MPN domain AM338_03530 SM00060 Fibronectin type 3 domain AM338_03600 SM00382 ATPases associated with a variety of cellular activities AM338_03615 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AM338_03620 SM00387 Histidine kinase-like ATPases AM338_03625 SM00448 cheY-homologous receiver domain AM338_03625 SM00862 Transcriptional regulatory protein, C terminal AM338_03655 SM01329 AM338_03655 AM338_03670 SM00422 helix_turn_helix, mercury resistance AM338_03675 SM00052 Putative diguanylate phosphodiesterase AM338_03675 SM01034 Sensors of blue-light using FAD AM338_03700 SM00052 Putative diguanylate phosphodiesterase AM338_03825 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_03840 SM01005 Alanine racemase, C-terminal domain AM338_03845 SM01091 Transporter associated domain AM338_03895 SM01120 AM338_03895 AM338_03905 SM00091 PAS domain AM338_03905 SM00382 ATPases associated with a variety of cellular activities AM338_03910 SM00869 Autotransporter beta-domain AM338_03945 SM01400 AM338_03945 AM338_03965 SM00937 AM338_03965 AM338_04040 SM00421 helix_turn_helix, Lux Regulon AM338_04040 SM00448 cheY-homologous receiver domain AM338_04045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_04045 SM00387 Histidine kinase-like ATPases AM338_04060 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_04125 SM00448 cheY-homologous receiver domain AM338_04135 SM00528 Domain in histone-like proteins of HNS family AM338_04180 SM00382 ATPases associated with a variety of cellular activities AM338_04185 SM00382 ATPases associated with a variety of cellular activities AM338_04195 SM00155 Phospholipase D. Active site motifs. AM338_04290 SM00481 DNA polymerase alpha chain like domain AM338_04305 SM00363 S4 RNA-binding domain AM338_04315 SM00822 AM338_04315 AM338_04335 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM338_04335 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM338_04335 SM00493 AM338_04335 AM338_04385 SM00014 Acid phosphatase homologues AM338_04395 SM00028 Tetratricopeptide repeats AM338_04400 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM338_04415 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_04415 SM01134 AM338_04415 AM338_04425 SM00052 Putative diguanylate phosphodiesterase AM338_04425 SM00091 PAS domain AM338_04425 SM00267 diguanylate cyclase AM338_04435 SM00357 Cold shock protein domain AM338_04435 SM00955 AM338_04435 AM338_04455 SM00382 ATPases associated with a variety of cellular activities AM338_04460 SM00382 ATPases associated with a variety of cellular activities AM338_04495 SM01230 AM338_04495 AM338_04505 SM00530 Helix-turn-helix XRE-family like proteins AM338_04530 SM00382 ATPases associated with a variety of cellular activities AM338_04555 SM00450 Rhodanese Homology Domain AM338_04560 SM00642 Alpha-amylase domain AM338_04605 SM00382 ATPases associated with a variety of cellular activities AM338_04615 SM00354 helix_turn _helix lactose operon repressor AM338_04630 SM00091 PAS domain AM338_04630 SM00382 ATPases associated with a variety of cellular activities AM338_04640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_04690 SM00100 Cyclic nucleotide-monophosphate binding domain AM338_04690 SM00419 helix_turn_helix, cAMP Regulatory protein AM338_04730 SM00463 Small MutS-related domain AM338_04735 SM00091 PAS domain AM338_04735 SM00267 diguanylate cyclase AM338_04750 SM00487 DEAD-like helicases superfamily AM338_04750 SM00490 helicase superfamily c-terminal domain AM338_04775 SM00890 Domain of unknown function AM338_04810 SM00342 helix_turn_helix, arabinose operon control protein AM338_04945 SM00195 Dual specificity phosphatase, catalytic domain AM338_04945 SM00404 Protein tyrosine phosphatase, catalytic domain motif AM338_04955 SM00382 ATPases associated with a variety of cellular activities AM338_04955 SM00487 DEAD-like helicases superfamily AM338_04955 SM00490 helicase superfamily c-terminal domain AM338_04955 SM00847 Helicase associated domain (HA2) Add an annotation AM338_05000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM338_05000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_05000 SM00319 Homologues of the ligand binding domain of Tar AM338_05010 SM01150 AM338_05010 AM338_05075 SM00530 Helix-turn-helix XRE-family like proteins AM338_05095 SM00530 Helix-turn-helix XRE-family like proteins AM338_05100 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_05110 SM00382 ATPases associated with a variety of cellular activities AM338_05165 SM00829 Enoylreductase AM338_05170 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_05170 SM00895 AM338_05170 AM338_05240 SM00903 Flavin reductase like domain AM338_05300 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_05320 SM00530 Helix-turn-helix XRE-family like proteins AM338_05325 SM00829 Enoylreductase AM338_05330 SM00919 Malic enzyme, NAD binding domain AM338_05330 SM01274 AM338_05330 AM338_05355 SM00382 ATPases associated with a variety of cellular activities AM338_05360 SM00382 ATPases associated with a variety of cellular activities AM338_05385 SM00052 Putative diguanylate phosphodiesterase AM338_05385 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM338_05385 SM00091 PAS domain AM338_05385 SM00267 diguanylate cyclase AM338_05390 SM00267 diguanylate cyclase AM338_05420 SM00382 ATPases associated with a variety of cellular activities AM338_05435 SM00342 helix_turn_helix, arabinose operon control protein AM338_05480 SM00530 Helix-turn-helix XRE-family like proteins AM338_05485 SM00869 Autotransporter beta-domain AM338_05505 SM00382 ATPases associated with a variety of cellular activities AM338_05525 SM01133 AM338_05525 AM338_05560 SM00267 diguanylate cyclase AM338_05600 SM00347 helix_turn_helix multiple antibiotic resistance protein AM338_05605 SM00342 helix_turn_helix, arabinose operon control protein AM338_05630 SM00267 diguanylate cyclase AM338_05660 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_05660 SM00895 AM338_05660 AM338_05685 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_05720 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_05725 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_05815 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AM338_05815 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AM338_05845 SM00448 cheY-homologous receiver domain AM338_05845 SM00862 Transcriptional regulatory protein, C terminal AM338_05850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_05850 SM00387 Histidine kinase-like ATPases AM338_05850 SM00388 His Kinase A (phosphoacceptor) domain AM338_05905 SM00354 helix_turn _helix lactose operon repressor AM338_05970 SM00900 AM338_05970 AM338_05980 SM00478 endonuclease III AM338_05980 SM00525 AM338_05980 AM338_06005 SM00363 S4 RNA-binding domain AM338_06030 SM00347 helix_turn_helix multiple antibiotic resistance protein AM338_06080 SM00479 AM338_06080 AM338_06085 SM00382 ATPases associated with a variety of cellular activities AM338_06085 SM00487 DEAD-like helicases superfamily AM338_06085 SM00490 helicase superfamily c-terminal domain AM338_06120 SM00354 helix_turn _helix lactose operon repressor AM338_06195 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AM338_06220 SM00257 Lysin motif AM338_06240 SM00382 ATPases associated with a variety of cellular activities AM338_06310 SM00882 Coenzyme A transferase AM338_06320 SM00342 helix_turn_helix, arabinose operon control protein AM338_06330 SM00893 Electron transfer flavoprotein domain AM338_06335 SM00893 Electron transfer flavoprotein domain AM338_06395 SM00382 ATPases associated with a variety of cellular activities AM338_06410 SM00411 bacterial (prokaryotic) histone like domain AM338_06415 SM00873 B3/4 domain AM338_06415 SM00874 tRNA synthetase B5 domain AM338_06415 SM00896 Ferredoxin-fold anticodon binding domain AM338_06440 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM338_06510 SM01060 AM338_06510 AM338_06525 SM00342 helix_turn_helix, arabinose operon control protein AM338_06560 SM00465 GIY-YIG type nucleases (URI domain) AM338_06640 SM00382 ATPases associated with a variety of cellular activities AM338_06645 SM00450 Rhodanese Homology Domain AM338_06665 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM338_06675 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM338_06675 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM338_06675 SM00493 AM338_06675 AM338_06705 SM00870 AM338_06705 AM338_06720 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_06720 SM01134 AM338_06720 AM338_06740 SM00829 Enoylreductase AM338_06765 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM338_06785 SM00763 PrkA AAA domain AM338_06795 SM00267 diguanylate cyclase AM338_06800 SM00267 diguanylate cyclase AM338_06820 SM00342 helix_turn_helix, arabinose operon control protein AM338_06840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_06840 SM00267 diguanylate cyclase AM338_06880 SM01329 AM338_06880 AM338_06900 SM00341 Helicase and RNase D C-terminal AM338_06900 SM00474 3'-5' exonuclease AM338_06920 SM00487 DEAD-like helicases superfamily AM338_06920 SM00491 AM338_06920 AM338_06960 SM01091 Transporter associated domain AM338_07010 SM00357 Cold shock protein domain AM338_07040 SM00346 helix_turn_helix isocitrate lyase regulation AM338_07055 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM338_07055 SM00245 tail specific protease AM338_07060 SM00945 ProQ/FINO family AM338_07065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_07125 SM00479 AM338_07125 AM338_07185 SM00257 Lysin motif AM338_07195 SM00382 ATPases associated with a variety of cellular activities AM338_07205 SM00382 ATPases associated with a variety of cellular activities AM338_07210 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM338_07295 SM00836 DALR anticodon binding domain AM338_07295 SM01016 Arginyl tRNA synthetase N terminal dom AM338_07325 SM00448 cheY-homologous receiver domain AM338_07330 SM00448 cheY-homologous receiver domain AM338_07335 SM00138 Methyltransferase, chemotaxis proteins AM338_07340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM338_07340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_07340 SM00319 Homologues of the ligand binding domain of Tar AM338_07345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM338_07345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_07345 SM00319 Homologues of the ligand binding domain of Tar AM338_07350 SM00260 Two component signalling adaptor domain AM338_07355 SM00073 Histidine Phosphotransfer domain AM338_07355 SM00260 Two component signalling adaptor domain AM338_07355 SM00387 Histidine kinase-like ATPases AM338_07355 SM01231 AM338_07355 AM338_07400 SM00382 ATPases associated with a variety of cellular activities AM338_07475 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM338_07475 SM00465 GIY-YIG type nucleases (URI domain) AM338_07480 SM00421 helix_turn_helix, Lux Regulon AM338_07480 SM00448 cheY-homologous receiver domain AM338_07495 SM00421 helix_turn_helix, Lux Regulon AM338_07500 SM00382 ATPases associated with a variety of cellular activities AM338_07515 SM00062 Bacterial periplasmic substrate-binding proteins AM338_07515 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM338_07555 SM00642 Alpha-amylase domain AM338_07620 SM00382 ATPases associated with a variety of cellular activities AM338_07670 SM00421 helix_turn_helix, Lux Regulon AM338_07730 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM338_07755 SM00387 Histidine kinase-like ATPases AM338_07755 SM00388 His Kinase A (phosphoacceptor) domain AM338_07760 SM00448 cheY-homologous receiver domain AM338_07760 SM00862 Transcriptional regulatory protein, C terminal AM338_07765 SM00095 Transthyretin AM338_07810 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AM338_07810 SM00634 Bacterial Ig-like domain (group 1) AM338_07885 SM00382 ATPases associated with a variety of cellular activities AM338_07890 SM00382 ATPases associated with a variety of cellular activities AM338_07895 SM00342 helix_turn_helix, arabinose operon control protein AM338_07900 SM00823 Phosphopantetheine attachment site AM338_07905 SM00822 AM338_07905 AM338_07905 SM00823 Phosphopantetheine attachment site AM338_07905 SM00824 Thioesterase AM338_07905 SM00825 Beta-ketoacyl synthase AM338_07905 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM338_08230 SM00871 Bacterial transcription activator, effector binding domain AM338_08240 SM00936 Penicillin-binding protein 5, C-terminal domain AM338_08245 SM00479 AM338_08245 AM338_08350 SM00220 Serine/Threonine protein kinases, catalytic domain AM338_08355 SM00382 ATPases associated with a variety of cellular activities AM338_08380 SM00984 UDP binding domain AM338_08415 SM01350 AM338_08415 AM338_08465 SM00226 Low molecular weight phosphatase family AM338_08485 SM00014 Acid phosphatase homologues AM338_08495 SM00116 Domain in cystathionine beta-synthase and other proteins. AM338_08495 SM01091 Transporter associated domain AM338_08505 SM00530 Helix-turn-helix XRE-family like proteins AM338_08525 SM00052 Putative diguanylate phosphodiesterase AM338_08525 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM338_08525 SM00091 PAS domain AM338_08525 SM00267 diguanylate cyclase AM338_08530 SM00478 endonuclease III AM338_08530 SM01009 AlkA N-terminal domain AM338_08555 SM00327 von Willebrand factor (vWF) type A domain AM338_08585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_08585 SM00387 Histidine kinase-like ATPases AM338_08585 SM00388 His Kinase A (phosphoacceptor) domain AM338_08590 SM00448 cheY-homologous receiver domain AM338_08590 SM00862 Transcriptional regulatory protein, C terminal AM338_08615 SM00046 Diacylglycerol kinase catalytic domain (presumed) AM338_08645 SM00354 helix_turn _helix lactose operon repressor AM338_08665 SM01133 AM338_08665 AM338_08685 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_08685 SM00866 AM338_08685 AM338_08690 SM00641 Glycosyl hydrolases family 25 AM338_08775 SM00382 ATPases associated with a variety of cellular activities AM338_08785 SM00327 von Willebrand factor (vWF) type A domain AM338_08805 SM00448 cheY-homologous receiver domain AM338_08805 SM00850 LytTr DNA-binding domain AM338_08810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_08815 SM00422 helix_turn_helix, mercury resistance AM338_08830 SM00382 ATPases associated with a variety of cellular activities AM338_08845 SM01217 AM338_08845 AM338_08940 SM00382 ATPases associated with a variety of cellular activities AM338_08950 SM00354 helix_turn _helix lactose operon repressor AM338_09015 SM00518 AP endonuclease family 2 AM338_09035 SM00100 Cyclic nucleotide-monophosphate binding domain AM338_09080 SM00841 Elongation factor P, C-terminal AM338_09080 SM01185 AM338_09080 AM338_09090 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM338_09095 SM00014 Acid phosphatase homologues AM338_09105 SM00052 Putative diguanylate phosphodiesterase AM338_09125 SM00382 ATPases associated with a variety of cellular activities AM338_09145 SM00363 S4 RNA-binding domain AM338_09155 SM00487 DEAD-like helicases superfamily AM338_09155 SM00490 helicase superfamily c-terminal domain AM338_09190 SM00869 Autotransporter beta-domain AM338_09200 SM00421 helix_turn_helix, Lux Regulon AM338_09200 SM00448 cheY-homologous receiver domain AM338_09240 SM00382 ATPases associated with a variety of cellular activities AM338_09265 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_09295 SM00382 ATPases associated with a variety of cellular activities AM338_09305 SM00342 helix_turn_helix, arabinose operon control protein AM338_09330 SM00387 Histidine kinase-like ATPases AM338_09335 SM00421 helix_turn_helix, Lux Regulon AM338_09335 SM00448 cheY-homologous receiver domain AM338_09340 SM00387 Histidine kinase-like ATPases AM338_09340 SM00388 His Kinase A (phosphoacceptor) domain AM338_09340 SM00448 cheY-homologous receiver domain AM338_09345 SM00091 PAS domain AM338_09345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_09345 SM00387 Histidine kinase-like ATPases AM338_09345 SM00388 His Kinase A (phosphoacceptor) domain AM338_09350 SM00382 ATPases associated with a variety of cellular activities AM338_09350 SM00448 cheY-homologous receiver domain AM338_09355 SM00882 Coenzyme A transferase AM338_09360 SM00882 Coenzyme A transferase AM338_09385 SM01359 AM338_09385 AM338_09385 SM01360 AM338_09385 AM338_09400 SM00434 DNA Topoisomerase IV AM338_09410 SM00869 Autotransporter beta-domain AM338_09490 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_09500 SM00346 helix_turn_helix isocitrate lyase regulation AM338_09505 SM00852 Probable molybdopterin binding domain AM338_09570 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_09605 SM00849 Metallo-beta-lactamase superfamily AM338_09615 SM00327 von Willebrand factor (vWF) type A domain AM338_09680 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM338_09680 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM338_09685 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM338_09725 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM338_09785 SM00905 Dihydroneopterin aldolase AM338_09800 SM00382 ATPases associated with a variety of cellular activities AM338_09815 SM00062 Bacterial periplasmic substrate-binding proteins AM338_09820 SM00062 Bacterial periplasmic substrate-binding proteins AM338_09865 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM338_09890 SM00825 Beta-ketoacyl synthase AM338_09930 SM00463 Small MutS-related domain AM338_10040 SM00640 Glycosyl hydrolases family 32 AM338_10045 SM00354 helix_turn _helix lactose operon repressor AM338_10070 SM00421 helix_turn_helix, Lux Regulon AM338_10070 SM00448 cheY-homologous receiver domain AM338_10075 SM00062 Bacterial periplasmic substrate-binding proteins AM338_10075 SM00073 Histidine Phosphotransfer domain AM338_10075 SM00387 Histidine kinase-like ATPases AM338_10075 SM00388 His Kinase A (phosphoacceptor) domain AM338_10075 SM00448 cheY-homologous receiver domain AM338_10125 SM00387 Histidine kinase-like ATPases AM338_10130 SM00448 cheY-homologous receiver domain AM338_10130 SM00850 LytTr DNA-binding domain AM338_10195 SM00052 Putative diguanylate phosphodiesterase AM338_10195 SM00267 diguanylate cyclase AM338_10285 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM338_10285 SM00292 breast cancer carboxy-terminal domain AM338_10285 SM00532 Ligase N family AM338_10290 SM00771 ZipA, C-terminal domain (FtsZ-binding) AM338_10330 SM00773 Proposed nucleic acid binding domain AM338_10340 SM00382 ATPases associated with a variety of cellular activities AM338_10365 SM00822 AM338_10365 AM338_10410 SM00646 AM338_10410 AM338_10420 SM00342 helix_turn_helix, arabinose operon control protein AM338_10425 SM00877 AM338_10425 AM338_10430 SM00877 AM338_10430 AM338_10475 SM00877 AM338_10475 AM338_10500 SM00877 AM338_10500 AM338_10505 SM00919 Malic enzyme, NAD binding domain AM338_10505 SM01274 AM338_10505 AM338_10520 SM00861 Transketolase, pyrimidine binding domain AM338_10540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_10540 SM00387 Histidine kinase-like ATPases AM338_10590 SM01130 AM338_10590 AM338_10655 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_10655 SM00382 ATPases associated with a variety of cellular activities AM338_10725 SM00052 Putative diguanylate phosphodiesterase AM338_10725 SM00267 diguanylate cyclase AM338_10760 SM00116 Domain in cystathionine beta-synthase and other proteins. AM338_10760 SM01240 AM338_10760 AM338_10780 SM00564 beta-propeller repeat AM338_10800 SM00530 Helix-turn-helix XRE-family like proteins AM338_10810 SM00562 AM338_10810 AM338_10820 SM01359 AM338_10820 AM338_10820 SM01360 AM338_10820 AM338_10825 SM00450 Rhodanese Homology Domain AM338_10855 SM00271 DnaJ molecular chaperone homology domain AM338_10945 SM00829 Enoylreductase AM338_10955 SM00382 ATPases associated with a variety of cellular activities AM338_10965 SM00028 Tetratricopeptide repeats AM338_10985 SM00938 Nitrogen regulatory protein P-II AM338_10990 SM00382 ATPases associated with a variety of cellular activities AM338_10990 SM00448 cheY-homologous receiver domain AM338_11000 SM00387 Histidine kinase-like ATPases AM338_11000 SM00388 His Kinase A (phosphoacceptor) domain AM338_11005 SM01211 AM338_11005 AM338_11015 SM00062 Bacterial periplasmic substrate-binding proteins AM338_11075 SM00358 Double-stranded RNA binding motif AM338_11075 SM00535 Ribonuclease III family AM338_11125 SM00487 DEAD-like helicases superfamily AM338_11125 SM00490 helicase superfamily c-terminal domain AM338_11145 SM00986 Uracil DNA glycosylase superfamily AM338_11145 SM00987 UreE urease accessory protein, C-terminal domain AM338_11150 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM338_11165 SM01144 AM338_11165 AM338_11170 SM00881 CoA binding domain AM338_11175 SM00155 Phospholipase D. Active site motifs. AM338_11215 SM00382 ATPases associated with a variety of cellular activities AM338_11215 SM01086 C-terminal, D2-small domain, of ClpB protein AM338_11225 SM00363 S4 RNA-binding domain AM338_11245 SM00830 Chorismate mutase type II AM338_11250 SM00830 Chorismate mutase type II AM338_11270 SM00267 diguanylate cyclase AM338_11300 SM00382 ATPases associated with a variety of cellular activities AM338_11300 SM00962 SRP54-type protein, GTPase domain AM338_11300 SM00963 SRP54-type protein, helical bundle domain AM338_11310 SM01091 Transporter associated domain AM338_11360 SM00869 Autotransporter beta-domain AM338_11430 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_11430 SM00895 AM338_11430 AM338_11435 SM00257 Lysin motif AM338_11435 SM00749 bacterial OsmY and nodulation domain AM338_11445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM338_11450 SM00450 Rhodanese Homology Domain AM338_11455 SM00528 Domain in histone-like proteins of HNS family AM338_11500 SM00382 ATPases associated with a variety of cellular activities AM338_11530 SM00347 helix_turn_helix multiple antibiotic resistance protein AM338_11595 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM338_11605 SM00382 ATPases associated with a variety of cellular activities AM338_11645 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_11645 SM01134 AM338_11645 AM338_11655 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_11655 SM00382 ATPases associated with a variety of cellular activities AM338_11660 SM00849 Metallo-beta-lactamase superfamily AM338_11680 SM00354 helix_turn _helix lactose operon repressor AM338_11770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_11770 SM00382 ATPases associated with a variety of cellular activities AM338_11780 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AM338_11780 SM00534 ATPase domain of DNA mismatch repair MUTS family AM338_11790 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_11790 SM01134 AM338_11790 AM338_11805 SM01007 Class II Aldolase and Adducin N-terminal domain AM338_11825 SM00257 Lysin motif AM338_11895 SM01101 AM338_11895 AM338_11920 SM00487 DEAD-like helicases superfamily AM338_11920 SM00490 helicase superfamily c-terminal domain AM338_11970 SM00893 Electron transfer flavoprotein domain AM338_12015 SM01192 AM338_12015 AM338_12015 SM01193 AM338_12015 AM338_12035 SM00966 SpoVT / AbrB like domain AM338_12040 SM00954 Region found in RelA / SpoT proteins AM338_12050 SM00073 Histidine Phosphotransfer domain AM338_12050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_12050 SM00387 Histidine kinase-like ATPases AM338_12050 SM00388 His Kinase A (phosphoacceptor) domain AM338_12050 SM00448 cheY-homologous receiver domain AM338_12055 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_12060 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_12110 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM338_12110 SM00475 5'-3' exonuclease AM338_12120 SM01007 Class II Aldolase and Adducin N-terminal domain AM338_12145 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_12145 SM01134 AM338_12145 AM338_12185 SM00925 MltA specific insert domain AM338_12210 SM00646 AM338_12210 AM338_12220 SM00382 ATPases associated with a variety of cellular activities AM338_12270 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM338_12280 SM00927 DNA mismatch repair enzyme MutH AM338_12305 SM00563 Phosphate acyltransferases AM338_12310 SM00354 helix_turn _helix lactose operon repressor AM338_12360 SM00862 Transcriptional regulatory protein, C terminal AM338_12400 SM00028 Tetratricopeptide repeats AM338_12400 SM00862 Transcriptional regulatory protein, C terminal AM338_12420 SM00421 helix_turn_helix, Lux Regulon AM338_12480 SM00421 helix_turn_helix, Lux Regulon AM338_12570 SM00257 Lysin motif AM338_12580 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM338_12585 SM01092 CO dehydrogenase flavoprotein C-terminal domain AM338_12595 SM00091 PAS domain AM338_12595 SM00382 ATPases associated with a variety of cellular activities AM338_12650 SM01092 CO dehydrogenase flavoprotein C-terminal domain AM338_12655 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM338_12755 SM01022 AM338_12755 AM338_12795 SM01011 Aminopeptidase P, N-terminal domain AM338_12910 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM338_12950 SM00861 Transketolase, pyrimidine binding domain AM338_12995 SM00731 SprT homologues. AM338_13020 SM00732 Likely ribonuclease with RNase H fold. AM338_13025 SM00382 ATPases associated with a variety of cellular activities AM338_13040 SM01152 AM338_13040 AM338_13050 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_13060 SM00870 AM338_13060 AM338_13085 SM00478 endonuclease III AM338_13085 SM00525 AM338_13085 AM338_13130 SM00028 Tetratricopeptide repeats AM338_13170 SM00347 helix_turn_helix multiple antibiotic resistance protein AM338_13330 SM00877 AM338_13330 AM338_13335 SM00877 AM338_13335 AM338_13345 SM00877 AM338_13345 AM338_13390 SM00342 helix_turn_helix, arabinose operon control protein AM338_13390 SM00448 cheY-homologous receiver domain AM338_13400 SM00877 AM338_13400 AM338_13590 SM01276 AM338_13590 AM338_13630 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_13630 SM00895 AM338_13630 AM338_13815 SM00342 helix_turn_helix, arabinose operon control protein AM338_13840 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_13850 SM00563 Phosphate acyltransferases AM338_13855 SM00434 DNA Topoisomerase IV AM338_13865 SM00530 Helix-turn-helix XRE-family like proteins AM338_13875 SM00871 Bacterial transcription activator, effector binding domain AM338_13885 SM00448 cheY-homologous receiver domain AM338_13885 SM00862 Transcriptional regulatory protein, C terminal AM338_13890 SM00387 Histidine kinase-like ATPases AM338_13890 SM00388 His Kinase A (phosphoacceptor) domain AM338_13915 SM00387 Histidine kinase-like ATPases AM338_13915 SM00433 TopoisomeraseII AM338_14015 SM00244 prohibitin homologues AM338_14035 SM01118 AM338_14035 AM338_14045 SM00287 Bacterial SH3 domain homologues AM338_14060 SM00905 Dihydroneopterin aldolase AM338_14065 SM01207 AM338_14065 AM338_14110 SM00400 zinc finger AM338_14110 SM00493 AM338_14110 AM338_14110 SM00766 DNA primase DnaG DnaB-binding AM338_14150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM338_14150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM338_14175 SM00354 helix_turn _helix lactose operon repressor AM338_14180 SM01038 Beta galactosidase small chain AM338_14210 SM00530 Helix-turn-helix XRE-family like proteins AM338_14260 SM00858 AM338_14260 AM338_14275 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_14275 SM00895 AM338_14275 AM338_14450 SM00858 AM338_14450 AM338_14465 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_14465 SM01134 AM338_14465 AM338_14585 SM00749 bacterial OsmY and nodulation domain AM338_14595 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM338_14610 SM00465 GIY-YIG type nucleases (URI domain) AM338_14645 SM00487 DEAD-like helicases superfamily AM338_14645 SM00490 helicase superfamily c-terminal domain AM338_14655 SM00028 Tetratricopeptide repeats AM338_14660 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_14660 SM00322 K homology RNA-binding domain AM338_14665 SM01387 AM338_14665 AM338_14685 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_14735 SM00382 ATPases associated with a variety of cellular activities AM338_14745 SM01103 AM338_14745 AM338_14820 SM00382 ATPases associated with a variety of cellular activities AM338_14850 SM00382 ATPases associated with a variety of cellular activities AM338_14895 SM00073 Histidine Phosphotransfer domain AM338_14895 SM00091 PAS domain AM338_14895 SM00387 Histidine kinase-like ATPases AM338_14895 SM00388 His Kinase A (phosphoacceptor) domain AM338_14895 SM00448 cheY-homologous receiver domain AM338_14900 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_15005 SM01130 AM338_15005 AM338_15010 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_15010 SM00895 AM338_15010 AM338_15060 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM338_15065 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM338_15120 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_15155 SM00052 Putative diguanylate phosphodiesterase AM338_15155 SM00267 diguanylate cyclase AM338_15160 SM00829 Enoylreductase AM338_15175 SM00878 Biotin carboxylase C-terminal domain AM338_15245 SM00062 Bacterial periplasmic substrate-binding proteins AM338_15260 SM00382 ATPases associated with a variety of cellular activities AM338_15365 SM00422 helix_turn_helix, mercury resistance AM338_15380 SM00662 RNA polymerases D AM338_15385 SM00363 S4 RNA-binding domain AM338_15385 SM01390 AM338_15385 AM338_15450 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM338_15455 SM01374 AM338_15455 AM338_15475 SM00322 K homology RNA-binding domain AM338_15490 SM01382 AM338_15490 AM338_15490 SM01383 AM338_15490 AM338_15510 SM01403 AM338_15510 AM338_15540 SM00382 ATPases associated with a variety of cellular activities AM338_15600 SM00495 Chitin-binding domain type 3 AM338_15615 SM00838 Elongation factor G C-terminus AM338_15615 SM00889 Elongation factor G, domain IV AM338_15685 SM00382 ATPases associated with a variety of cellular activities AM338_15715 SM00100 Cyclic nucleotide-monophosphate binding domain AM338_15715 SM00419 helix_turn_helix, cAMP Regulatory protein AM338_15805 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_15805 SM00866 AM338_15805 AM338_15890 SM00965 Secretin and TonB N terminus short domain AM338_15935 SM00363 S4 RNA-binding domain AM338_15960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_15960 SM00387 Histidine kinase-like ATPases AM338_15960 SM00388 His Kinase A (phosphoacceptor) domain AM338_15965 SM00448 cheY-homologous receiver domain AM338_15965 SM00862 Transcriptional regulatory protein, C terminal AM338_15980 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_15980 SM00732 Likely ribonuclease with RNase H fold. AM338_15990 SM00899 AM338_15990 AM338_16045 SM00421 helix_turn_helix, Lux Regulon AM338_16060 SM00382 ATPases associated with a variety of cellular activities AM338_16065 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_16065 SM01134 AM338_16065 AM338_16075 SM00450 Rhodanese Homology Domain AM338_16110 SM00642 Alpha-amylase domain AM338_16115 SM00642 Alpha-amylase domain AM338_16120 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM338_16140 SM00354 helix_turn _helix lactose operon repressor AM338_16200 SM00382 ATPases associated with a variety of cellular activities AM338_16220 SM00382 ATPases associated with a variety of cellular activities AM338_16225 SM00382 ATPases associated with a variety of cellular activities AM338_16270 SM00382 ATPases associated with a variety of cellular activities AM338_16275 SM00382 ATPases associated with a variety of cellular activities AM338_16275 SM00962 SRP54-type protein, GTPase domain AM338_16275 SM00963 SRP54-type protein, helical bundle domain AM338_16350 SM00382 ATPases associated with a variety of cellular activities AM338_16355 SM00382 ATPases associated with a variety of cellular activities AM338_16390 SM00382 ATPases associated with a variety of cellular activities AM338_16480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM338_16510 SM00421 helix_turn_helix, Lux Regulon AM338_16560 SM00342 helix_turn_helix, arabinose operon control protein AM338_16565 SM00342 helix_turn_helix, arabinose operon control protein AM338_16575 SM01235 AM338_16575 AM338_16585 SM00421 helix_turn_helix, Lux Regulon AM338_16610 SM00052 Putative diguanylate phosphodiesterase AM338_16645 SM00052 Putative diguanylate phosphodiesterase AM338_16645 SM00267 diguanylate cyclase AM338_16650 SM00028 Tetratricopeptide repeats AM338_16715 SM00382 ATPases associated with a variety of cellular activities AM338_16720 SM00382 ATPases associated with a variety of cellular activities AM338_16810 SM00530 Helix-turn-helix XRE-family like proteins AM338_16815 SM00357 Cold shock protein domain AM338_16875 SM00382 ATPases associated with a variety of cellular activities AM338_16885 SM00342 helix_turn_helix, arabinose operon control protein AM338_16890 SM00047 Lysozyme subfamily 2 AM338_16895 SM00642 Alpha-amylase domain AM338_16910 SM00346 helix_turn_helix isocitrate lyase regulation AM338_16945 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM338_16955 SM01007 Class II Aldolase and Adducin N-terminal domain AM338_17110 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_17110 SM00895 AM338_17110 AM338_17125 SM00971 Serine acetyltransferase, N-terminal AM338_17145 SM00450 Rhodanese Homology Domain AM338_17175 SM00829 Enoylreductase AM338_17265 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM338_17265 SM01232 AM338_17265 AM338_17335 SM00532 Ligase N family AM338_17340 SM00072 Guanylate kinase homologues. AM338_17345 SM01409 AM338_17345 AM338_17350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM338_17350 SM00954 Region found in RelA / SpoT proteins AM338_17360 SM00487 DEAD-like helicases superfamily AM338_17360 SM00490 helicase superfamily c-terminal domain AM338_17460 SM00387 Histidine kinase-like ATPases AM338_17465 SM00421 helix_turn_helix, Lux Regulon AM338_17465 SM00448 cheY-homologous receiver domain AM338_17555 SM00342 helix_turn_helix, arabinose operon control protein AM338_17570 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_17570 SM00866 AM338_17570 AM338_17610 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM338_17625 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_17625 SM00895 AM338_17625 AM338_17645 SM00387 Histidine kinase-like ATPases AM338_17645 SM00433 TopoisomeraseII AM338_17655 SM00480 DNA polymerase III beta subunit AM338_17660 SM00382 ATPases associated with a variety of cellular activities AM338_17660 SM00760 Bacterial dnaA protein helix-turn-helix domain AM338_17680 SM01234 AM338_17680 AM338_17795 SM01061 CAT RNA binding domain AM338_17805 SM00382 ATPases associated with a variety of cellular activities AM338_17840 SM00382 ATPases associated with a variety of cellular activities AM338_17885 SM01228 AM338_17885 AM338_17895 SM00344 helix_turn_helix ASNC type AM338_17905 SM00327 von Willebrand factor (vWF) type A domain AM338_17910 SM00382 ATPases associated with a variety of cellular activities AM338_17925 SM00382 ATPases associated with a variety of cellular activities AM338_17945 SM00354 helix_turn _helix lactose operon repressor AM338_17955 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_17955 SM00895 AM338_17955 AM338_18000 SM00382 ATPases associated with a variety of cellular activities AM338_18075 SM00487 DEAD-like helicases superfamily AM338_18075 SM00490 helicase superfamily c-terminal domain AM338_18090 SM00357 Cold shock protein domain AM338_18090 SM00382 ATPases associated with a variety of cellular activities AM338_18090 SM00959 Rho termination factor, N-terminal domain AM338_18115 SM00984 UDP binding domain AM338_18225 SM01219 AM338_18225 AM338_18300 SM00341 Helicase and RNase D C-terminal AM338_18300 SM00487 DEAD-like helicases superfamily AM338_18300 SM00490 helicase superfamily c-terminal domain AM338_18300 SM00956 AM338_18300 AM338_18395 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AM338_18495 SM00563 Phosphate acyltransferases AM338_18505 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM338_18505 SM00474 3'-5' exonuclease AM338_18505 SM00475 5'-3' exonuclease AM338_18505 SM00482 DNA polymerase A domain AM338_18525 SM00729 Elongator protein 3, MiaB family, Radical SAM AM338_18535 SM00382 ATPases associated with a variety of cellular activities AM338_18535 SM00448 cheY-homologous receiver domain AM338_18540 SM00091 PAS domain AM338_18540 SM00387 Histidine kinase-like ATPases AM338_18540 SM00388 His Kinase A (phosphoacceptor) domain AM338_18545 SM01230 AM338_18545 AM338_18560 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_18560 SM00866 AM338_18560 AM338_18605 SM01133 AM338_18605 AM338_18620 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_18620 SM01134 AM338_18620 AM338_18715 SM01007 Class II Aldolase and Adducin N-terminal domain AM338_18730 SM00342 helix_turn_helix, arabinose operon control protein AM338_18735 SM00342 helix_turn_helix, arabinose operon control protein AM338_18765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_18765 SM00387 Histidine kinase-like ATPases AM338_18765 SM00388 His Kinase A (phosphoacceptor) domain AM338_18770 SM00448 cheY-homologous receiver domain AM338_18770 SM00862 Transcriptional regulatory protein, C terminal AM338_18865 SM00382 ATPases associated with a variety of cellular activities AM338_18865 SM01086 C-terminal, D2-small domain, of ClpB protein AM338_18880 SM00354 helix_turn _helix lactose operon repressor AM338_18885 SM00487 DEAD-like helicases superfamily AM338_18885 SM00490 helicase superfamily c-terminal domain AM338_18975 SM00342 helix_turn_helix, arabinose operon control protein AM338_19000 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM338_19130 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AM338_19130 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM338_19135 SM00649 Ribosomal protein L11/L12 AM338_19165 SM00663 RNA polymerase I subunit A N-terminus AM338_19175 SM00876 Biotin and Thiamin Synthesis associated domain AM338_19230 SM00411 bacterial (prokaryotic) histone like domain AM338_19250 SM00387 Histidine kinase-like ATPases AM338_19250 SM00388 His Kinase A (phosphoacceptor) domain AM338_19255 SM00382 ATPases associated with a variety of cellular activities AM338_19255 SM00448 cheY-homologous receiver domain AM338_19260 SM01209 AM338_19260 AM338_19260 SM01210 AM338_19260 AM338_19265 SM00798 AICARFT/IMPCHase bienzyme AM338_19265 SM00851 MGS-like domain AM338_19325 SM00248 ankyrin repeats AM338_19330 SM00346 helix_turn_helix isocitrate lyase regulation AM338_19335 SM01018 B12 binding domain AM338_19350 SM00363 S4 RNA-binding domain AM338_19435 SM00382 ATPases associated with a variety of cellular activities AM338_19475 SM00563 Phosphate acyltransferases AM338_19570 SM00530 Helix-turn-helix XRE-family like proteins AM338_19580 SM00530 Helix-turn-helix XRE-family like proteins AM338_19615 SM01252 AM338_19615 AM338_19620 SM00507 HNH nucleases AM338_19730 SM00635 Bacterial Ig-like domain 2 AM338_19760 SM00232 JAB/MPN domain AM338_19770 SM00060 Fibronectin type 3 domain AM338_19810 SM00829 Enoylreductase AM338_19815 SM00382 ATPases associated with a variety of cellular activities AM338_19820 SM01005 Alanine racemase, C-terminal domain AM338_19885 SM00382 ATPases associated with a variety of cellular activities AM338_19910 SM00052 Putative diguanylate phosphodiesterase AM338_19915 SM00342 helix_turn_helix, arabinose operon control protein AM338_19920 SM00422 helix_turn_helix, mercury resistance AM338_20005 SM00028 Tetratricopeptide repeats AM338_20020 SM00671 Sel1-like repeats. AM338_20050 SM00849 Metallo-beta-lactamase superfamily AM338_20070 SM00382 ATPases associated with a variety of cellular activities AM338_20110 SM00072 Guanylate kinase homologues. AM338_20120 SM00382 ATPases associated with a variety of cellular activities AM338_20125 SM00382 ATPases associated with a variety of cellular activities AM338_20150 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_20150 SM00866 AM338_20150 AM338_20165 SM00382 ATPases associated with a variety of cellular activities AM338_20205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_20205 SM00387 Histidine kinase-like ATPases AM338_20205 SM00388 His Kinase A (phosphoacceptor) domain AM338_20210 SM00448 cheY-homologous receiver domain AM338_20210 SM00862 Transcriptional regulatory protein, C terminal AM338_20225 SM00342 helix_turn_helix, arabinose operon control protein AM338_20235 SM00342 helix_turn_helix, arabinose operon control protein AM338_20270 SM00448 cheY-homologous receiver domain AM338_20275 SM00091 PAS domain AM338_20275 SM00387 Histidine kinase-like ATPases AM338_20325 SM00862 Transcriptional regulatory protein, C terminal AM338_20375 SM00883 Chaperonin 10 Kd subunit AM338_20400 SM00841 Elongation factor P, C-terminal AM338_20400 SM01185 AM338_20400 AM338_20490 SM00479 AM338_20490 AM338_20525 SM00646 AM338_20525 AM338_20530 SM00853 MutL C terminal dimerisation domain AM338_20530 SM01340 AM338_20530 AM338_20550 SM00244 prohibitin homologues AM338_20555 SM00244 prohibitin homologues AM338_20565 SM00788 Adenylosuccinate synthetase AM338_20575 SM00316 Ribosomal protein S1-like RNA-binding domain AM338_20575 SM00357 Cold shock protein domain AM338_20575 SM00955 AM338_20575 AM338_20580 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM338_20585 SM00346 helix_turn_helix isocitrate lyase regulation AM338_20590 SM01130 AM338_20590 AM338_20600 SM00858 AM338_20600 AM338_20660 SM00420 helix_turn_helix, Deoxyribose operon repressor AM338_20660 SM01134 AM338_20660 AM338_20685 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM338_20695 SM01007 Class II Aldolase and Adducin N-terminal domain AM338_20740 SM01321 AM338_20740 AM338_20825 SM01091 Transporter associated domain AM338_20855 SM00966 SpoVT / AbrB like domain AM338_20875 SM00382 ATPases associated with a variety of cellular activities AM338_20925 SM00642 Alpha-amylase domain AM338_20935 SM00354 helix_turn _helix lactose operon repressor AM338_20940 SM00831 Cation transporter/ATPase, N-terminus AM338_20975 SM00822 AM338_20975 AM338_21045 SM00829 Enoylreductase AM338_21090 SM00493 AM338_21090 AM338_21090 SM00778 Zinc-binding domain of primase-helicase AM338_21230 SM00382 ATPases associated with a variety of cellular activities AM338_21250 SM00965 Secretin and TonB N terminus short domain AM338_21385 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_21385 SM00895 AM338_21385 AM338_21480 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM338_21500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM338_21500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_21500 SM00319 Homologues of the ligand binding domain of Tar AM338_21510 SM00895 AM338_21510 AM338_21515 SM00829 Enoylreductase AM338_21530 SM00382 ATPases associated with a variety of cellular activities AM338_21550 SM00421 helix_turn_helix, Lux Regulon AM338_21555 SM00421 helix_turn_helix, Lux Regulon AM338_21610 SM00749 bacterial OsmY and nodulation domain AM338_21640 SM01133 AM338_21640 AM338_21645 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AM338_21675 SM00382 ATPases associated with a variety of cellular activities AM338_21680 SM00530 Helix-turn-helix XRE-family like proteins AM338_21685 SM00382 ATPases associated with a variety of cellular activities AM338_21710 SM00855 Phosphoglycerate mutase family AM338_21715 SM00342 helix_turn_helix, arabinose operon control protein AM338_21715 SM00871 Bacterial transcription activator, effector binding domain AM338_21725 SM00448 cheY-homologous receiver domain AM338_21725 SM00862 Transcriptional regulatory protein, C terminal AM338_21730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_21730 SM00387 Histidine kinase-like ATPases AM338_21730 SM00388 His Kinase A (phosphoacceptor) domain AM338_21740 SM00448 cheY-homologous receiver domain AM338_21740 SM00862 Transcriptional regulatory protein, C terminal AM338_21795 SM00852 Probable molybdopterin binding domain AM338_21820 SM00271 DnaJ molecular chaperone homology domain AM338_21875 SM00904 Riboflavin kinase AM338_21915 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AM338_21920 SM00851 MGS-like domain AM338_21920 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM338_21965 SM00893 Electron transfer flavoprotein domain AM338_21970 SM00893 Electron transfer flavoprotein domain AM338_22015 SM00650 Ribosomal RNA adenine dimethylases AM338_22035 SM00271 DnaJ molecular chaperone homology domain AM338_22050 SM00487 DEAD-like helicases superfamily AM338_22050 SM00490 helicase superfamily c-terminal domain AM338_22055 SM00486 DNA polymerase type-B family AM338_22060 SM01007 Class II Aldolase and Adducin N-terminal domain AM338_22080 SM00342 helix_turn_helix, arabinose operon control protein AM338_22090 SM00382 ATPases associated with a variety of cellular activities AM338_22130 SM01329 AM338_22130 AM338_22135 SM00917 LeuA allosteric (dimerisation) domain AM338_22165 SM00354 helix_turn _helix lactose operon repressor AM338_22240 SM00842 Cell division protein FtsA AM338_22245 SM00864 Tubulin/FtsZ family, GTPase domain AM338_22245 SM00865 Tubulin/FtsZ family, C-terminal domain AM338_22260 SM00957 SecA DEAD-like domain AM338_22260 SM00958 SecA preprotein cross-linking domain AM338_22285 SM01240 AM338_22285 AM338_22315 SM00644 AM338_22315 AM338_22330 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM338_22330 SM00895 AM338_22330 AM338_22395 SM00564 beta-propeller repeat AM338_22405 SM00947 Carbonic anhydrase AM338_22410 SM00382 ATPases associated with a variety of cellular activities AM338_22525 SM00487 DEAD-like helicases superfamily AM338_22525 SM00490 helicase superfamily c-terminal domain AM338_22525 SM00847 Helicase associated domain (HA2) Add an annotation AM338_22545 SM00382 ATPases associated with a variety of cellular activities AM338_22590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM338_22600 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM338_22625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM338_22680 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM338_22690 SM00935 Outer membrane protein (OmpH-like) AM338_22720 SM00481 DNA polymerase alpha chain like domain AM338_22740 SM00977 TilS substrate C-terminal domain AM338_22755 SM01322 AM338_22755 AM338_22800 SM00382 ATPases associated with a variety of cellular activities AM338_22800 SM00930 AM338_22800 AM338_22860 SM00257 Lysin motif AM338_22865 SM00849 Metallo-beta-lactamase superfamily AM338_22880 SM00479 AM338_22880 AM338_22930 SM00382 ATPases associated with a variety of cellular activities AM338_22930 SM01086 C-terminal, D2-small domain, of ClpB protein AM338_23060 SM01321 AM338_23060 AM338_23130 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AM338_23210 SM01133 AM338_23210 AM338_23230 SM00382 ATPases associated with a variety of cellular activities AM338_23475 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM338_23480 SM01092 CO dehydrogenase flavoprotein C-terminal domain AM338_23535 SM00421 helix_turn_helix, Lux Regulon AM338_23575 SM00634 Bacterial Ig-like domain (group 1) AM338_23585 SM00342 helix_turn_helix, arabinose operon control protein AM338_23585 SM00871 Bacterial transcription activator, effector binding domain AM338_23605 SM00342 helix_turn_helix, arabinose operon control protein AM338_23675 SM00052 Putative diguanylate phosphodiesterase AM338_23675 SM00421 helix_turn_helix, Lux Regulon AM338_23695 SM00248 ankyrin repeats AM338_23730 SM00829 Enoylreductase AM338_23755 SM00382 ATPases associated with a variety of cellular activities AM338_23795 SM00947 Carbonic anhydrase AM338_23800 SM01116 AM338_23800 AM338_23810 SM01266 AM338_23810 AM338_23820 SM01038 Beta galactosidase small chain AM338_23830 SM00354 helix_turn _helix lactose operon repressor AM338_23835 SM00346 helix_turn_helix isocitrate lyase regulation AM338_23860 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM338_23885 SM00829 Enoylreductase AM338_23930 SM00062 Bacterial periplasmic substrate-binding proteins AM338_23935 SM00382 ATPases associated with a variety of cellular activities AM338_23950 SM01004 Delta-aminolevulinic acid dehydratase AM338_23960 SM00869 Autotransporter beta-domain AM338_24015 SM00098 Alkaline phosphatase homologues AM338_24025 SM00267 diguanylate cyclase AM338_24100 SM00448 cheY-homologous receiver domain AM338_24100 SM00862 Transcriptional regulatory protein, C terminal AM338_24105 SM00091 PAS domain AM338_24105 SM00387 Histidine kinase-like ATPases AM338_24105 SM00388 His Kinase A (phosphoacceptor) domain AM338_24120 SM00642 Alpha-amylase domain AM338_24140 SM01323 AM338_24140 AM338_24155 SM00507 HNH nucleases AM338_24205 SM00861 Transketolase, pyrimidine binding domain AM338_24220 SM00981 AM338_24220 AM338_24305 SM00382 ATPases associated with a variety of cellular activities AM338_24305 SM00994 ClpX C4-type zinc finger AM338_24305 SM01086 C-terminal, D2-small domain, of ClpB protein AM338_24310 SM00382 ATPases associated with a variety of cellular activities AM338_24310 SM00464 Found in ATP-dependent protease La (LON) AM338_24315 SM00411 bacterial (prokaryotic) histone like domain AM338_24325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM338_24350 SM00344 helix_turn_helix ASNC type AM338_24355 SM00382 ATPases associated with a variety of cellular activities AM338_24360 SM00382 ATPases associated with a variety of cellular activities AM338_24365 SM00938 Nitrogen regulatory protein P-II AM338_24400 SM00052 Putative diguanylate phosphodiesterase AM338_24410 SM01266 AM338_24410 AM338_24475 SM00382 ATPases associated with a variety of cellular activities AM338_24485 SM00493 AM338_24485 AM338_24490 SM00387 Histidine kinase-like ATPases AM338_24560 SM00530 Helix-turn-helix XRE-family like proteins AM338_24580 SM00422 helix_turn_helix, mercury resistance AM338_24590 SM00244 prohibitin homologues AM338_24595 SM00382 ATPases associated with a variety of cellular activities AM338_24610 SM00822 AM338_24610 AM338_24620 SM00382 ATPases associated with a variety of cellular activities AM338_24655 SM00450 Rhodanese Homology Domain AM338_24670 SM00346 helix_turn_helix isocitrate lyase regulation AM338_24750 SM01001 AIR carboxylase AM338_24770 SM00840 AM338_24770 AM338_24815 SM00421 helix_turn_helix, Lux Regulon AM338_25130 SM00470 ParB-like nuclease domain AM338_25170 SM00966 SpoVT / AbrB like domain AM338_25225 SM01006 Siderophore biosynthesis protein domain AM338_25250 SM01192 AM338_25250 AM338_25270 SM00382 ATPases associated with a variety of cellular activities AM338_25365 SM00382 ATPases associated with a variety of cellular activities AM338_25500 SM00900 AM338_25500 AM338_25535 SM00382 ATPases associated with a variety of cellular activities AM338_25785 SM00857 Resolvase, N terminal domain AM338_25980 SM00945 ProQ/FINO family AM338_26115 SM00966 SpoVT / AbrB like domain AM338_26160 SM00470 ParB-like nuclease domain AM338_26295 SM00857 Resolvase, N terminal domain AM338_26350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM338_26350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM338_26405 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM338_26405 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM338_26405 SM00493 AM338_26405 AM338_26545 SM00945 ProQ/FINO family AM338_26580 SM00244 prohibitin homologues AM338_26785 SM00318 Staphylococcal nuclease homologues