locus-tag	class	description
D9E17_00010	COG0592	DNA-directed DNA polymerase activity
D9E17_00020	COG0187	DNA topoisomerase II activity
D9E17_00025	COG3753	Protein conserved in bacteria
D9E17_00030	COG0561	phosphatase activity
D9E17_00040	COG2186	Transcriptional regulator
D9E17_00045	COG3734	2-keto-3-deoxy-galactonokinase
D9E17_00050	COG0800	Aldolase
D9E17_00060	COG2271	Major facilitator Superfamily
D9E17_00070	COG0823	Involved in the tonB-independent uptake of proteins
D9E17_00075	COG5645	(Lipo)protein
D9E17_00095	COG2188	Transcriptional regulator
D9E17_00120	COG0675	Transposase, IS605 OrfB family
D9E17_00125	COG2149	membrane
D9E17_00135	COG0641	radical SAM
D9E17_00140	COG2814	Major facilitator Superfamily
D9E17_00155	COG0028	Belongs to the TPP enzyme family
D9E17_00160	COG0440	acetolactate synthase activity
D9E17_00165	COG2197	response regulator
D9E17_00170	COG3851	Histidine kinase
D9E17_00175	COG2271	Major facilitator Superfamily
D9E17_00180	COG2271	Major facilitator Superfamily
D9E17_00190	COG2252	PERMEase
D9E17_00210	COG1464	Belongs to the NlpA lipoprotein family
D9E17_00215	COG0697	spore germination
D9E17_00220	COG2814	Major facilitator Superfamily
D9E17_00235	COG2211	Major facilitator Superfamily
D9E17_00240	COG1501	Belongs to the glycosyl hydrolase 31 family
D9E17_00245	COG2982	Protein involved in outer membrane biogenesis
D9E17_00250	COG2233	PERMEase
D9E17_00255	COG0786	glutamate:sodium symporter activity
D9E17_00260	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D9E17_00265	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9E17_00270	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D9E17_00290	COG2860	membrane
D9E17_00300	COG1561	YicC-like family, N-terminal region
D9E17_00325	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D9E17_00355	COG1519	Transferase
D9E17_00360	COG0859	PFAM glycosyl transferase family 9
D9E17_00365	COG0438	transferase activity, transferring glycosyl groups
D9E17_00370	COG0515	serine threonine protein kinase
D9E17_00385	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
D9E17_00390	COG1442	glycosyl transferase family 8
D9E17_00395	COG1216	Glycosyl transferase, family 2
D9E17_00400	COG3307	-O-antigen
D9E17_00405	COG0859	PFAM glycosyl transferase family 9
D9E17_00410	COG0859	PFAM glycosyl transferase family 9
D9E17_00420	COG0156	8-amino-7-oxononanoate synthase activity
D9E17_00430	COG1216	Glycosyl transferase, family 2
D9E17_00435	COG2861	carbohydrate metabolic process
D9E17_00440	COG4942	peptidase
D9E17_00450	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9E17_00455	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D9E17_00470	COG1045	serine acetyltransferase
D9E17_00475	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D9E17_00485	COG2186	Transcriptional regulator
D9E17_00490	COG1620	l-lactate permease
D9E17_00495	COG5295	Hep Hag repeat protein
D9E17_00520	COG3722	fumarate hydratase activity
D9E17_00530	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_00530	COG2213	PTS system mannitol-specific
D9E17_00540	COG1566	PFAM secretion protein HlyD family protein
D9E17_00560	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D9E17_00565	COG3209	COG3209 Rhs family protein
D9E17_00575	COG3209	COG3209 Rhs family protein
D9E17_00580	COG0625	glutathione transferase activity
D9E17_00590	COG3276	selenocysteine insertion sequence binding
D9E17_00595	COG1454	alcohol dehydrogenase
D9E17_00600	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_00615	COG1566	PFAM secretion protein HlyD family protein
D9E17_00620	COG0583	DNA-binding transcription factor activity
D9E17_00625	COG3713	MltA-interacting MipA family protein
D9E17_00635	COG2211	Major facilitator Superfamily
D9E17_00645	COG0235	Class ii aldolase
D9E17_00650	COG3623	hexulose-6-phosphate isomerase
D9E17_00655	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
D9E17_00660	COG1070	Carbohydrate kinase
D9E17_00665	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
D9E17_00670	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
D9E17_00675	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
D9E17_00680	COG2731	YhcH YjgK YiaL family protein
D9E17_00690	COG1414	Transcriptional regulator
D9E17_00695	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_00700	COG3977	Valine--pyruvate aminotransferase
D9E17_00705	COG0366	Alpha amylase catalytic
D9E17_00710	COG2992	FlgJ-related protein
D9E17_00715	COG2207	Transcriptional regulator
D9E17_00715	COG1609	Transcriptional regulator
D9E17_00720	COG4214	carbohydrate transport
D9E17_00725	COG1129	ABC transporter
D9E17_00730	COG4213	ABC transporter substrate-binding protein
D9E17_00740	COG1070	Carbohydrate kinase
D9E17_00745	COG4682	membrane
D9E17_00750	COG4682	membrane
D9E17_00755	COG3274	enterobacterial common antigen metabolic process
D9E17_00785	COG1278	Cold shock
D9E17_00790	COG2944	sequence-specific DNA binding
D9E17_00805	COG2885	chlorophyll binding
D9E17_00810	COG0243	molybdopterin cofactor binding
D9E17_00815	COG0456	acetyltransferase
D9E17_00820	COG2818	Glycosylase
D9E17_00825	COG5571	outer membrane autotransporter
D9E17_00830	COG2223	nitrite transmembrane transporter activity
D9E17_00835	COG2194	sulfuric ester hydrolase activity
D9E17_00845	COG0747	negative chemotaxis
D9E17_00855	COG0601	transmembrane transport
D9E17_00860	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9E17_00865	COG0444	Belongs to the ABC transporter superfamily
D9E17_00870	COG4608	Belongs to the ABC transporter superfamily
D9E17_00875	COG0814	amino acid
D9E17_00890	COG2194	sulfuric ester hydrolase activity
D9E17_00925	COG1215	transferase activity, transferring glycosyl groups
D9E17_00940	COG3118	belongs to the thioredoxin family
D9E17_00940	COG0457	Tetratricopeptide repeat
D9E17_00945	COG2199	diguanylate cyclase activity
D9E17_00945	COG2200	EAL domain
D9E17_00955	COG0612	Peptidase, M16
D9E17_00960	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_00965	COG2200	EAL domain
D9E17_00970	COG2982	Protein involved in outer membrane biogenesis
D9E17_00975	COG0477	Major facilitator Superfamily
D9E17_00980	COG1295	ribonuclease BN
D9E17_00985	COG0583	DNA-binding transcription factor activity
D9E17_00990	COG2197	response regulator
D9E17_01025	COG0076	glutamate decarboxylase activity
D9E17_01040	COG2207	Transcriptional regulator
D9E17_01045	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9E17_01050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_01060	COG2771	luxR family
D9E17_01065	COG3247	response to pH
D9E17_01080	COG1285	pathogenesis
D9E17_01085	COG2197	response regulator
D9E17_01090	COG3065	identical protein binding
D9E17_01100	COG1393	Belongs to the ArsC family
D9E17_01105	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D9E17_01110	COG0640	Transcriptional regulator
D9E17_01120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9E17_01125	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
D9E17_01130	COG0339	signal peptide processing
D9E17_01135	COG0742	ribosomal rna small subunit methyltransferase
D9E17_01140	COG3104	oligopeptide transport
D9E17_01145	COG0589	response to stress
D9E17_01155	COG0306	phosphate transporter
D9E17_01160	COG2081	HI0933 family
D9E17_01245	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_01275	COG0739	heme binding
D9E17_01285	COG2132	Multicopper oxidase
D9E17_01290	COG3667	copper resistance
D9E17_01295	COG2372	response to copper ion
D9E17_01300	COG1276	copper resistance
D9E17_01305	COG0745	RESPONSE REGULATOR receiver
D9E17_01310	COG2205	protein histidine kinase activity
D9E17_01335	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_01340	COG1129	ABC transporter
D9E17_01340	COG0842	Transport permease protein
D9E17_01345	COG0842	Transport permease protein
D9E17_01350	COG5433	transposase activity
D9E17_01365	COG3209	COG3209 Rhs family protein
D9E17_01375	COG1124	(ABC) transporter
D9E17_01380	COG0444	Belongs to the ABC transporter superfamily
D9E17_01385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9E17_01390	COG0601	transmembrane transport
D9E17_01395	COG0747	negative chemotaxis
D9E17_01400	COG2091	lysine biosynthetic process via aminoadipic acid
D9E17_01405	COG0628	permease
D9E17_01410	COG0477	Major facilitator Superfamily
D9E17_01420	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D9E17_01435	COG3714	YhhN family
D9E17_01445	COG3776	membrane
D9E17_01450	COG0742	ribosomal rna small subunit methyltransferase
D9E17_01455	COG0552	protein localization to endoplasmic reticulum
D9E17_01460	COG2884	Cell division ATP-binding protein ftsE
D9E17_01465	COG2177	Part of the ABC transporter FtsEX involved in
D9E17_01470	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D9E17_01475	COG0683	leucine binding
D9E17_01480	COG0456	acetyltransferase
D9E17_01485	COG0683	leucine binding
D9E17_01490	COG0559	Belongs to the binding-protein-dependent transport system permease family
D9E17_01495	COG4177	L-phenylalanine transmembrane transporter activity
D9E17_01500	COG0411	ABC transporter
D9E17_01505	COG0410	ABC transporter
D9E17_01510	COG1653	transport
D9E17_01515	COG1175	transmembrane transport
D9E17_01520	COG0395	ABC-type sugar transport system, permease component
D9E17_01525	COG3842	ATPase activity
D9E17_01530	COG0584	glycerophosphoryl diester phosphodiesterase
D9E17_01540	COG0405	Gamma-glutamyltransferase
D9E17_01565	COG3157	Type VI secretion system effector, Hcp
D9E17_01570	COG1247	-acetyltransferase
D9E17_01575	COG0673	inositol 2-dehydrogenase activity
D9E17_01580	COG1741	Belongs to the pirin family
D9E17_01585	COG1609	Transcriptional regulator
D9E17_01590	COG3265	gluconokinase activity
D9E17_01595	COG2610	gluconate transmembrane transporter activity
D9E17_01600	COG2095	MarC family integral membrane protein
D9E17_01605	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D9E17_01615	COG1523	belongs to the glycosyl hydrolase 13 family
D9E17_01630	COG0058	SHG alpha-glucan phosphorylase activity
D9E17_01635	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D9E17_01655	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D9E17_01670	COG1349	DNA-binding transcription factor activity
D9E17_01675	COG4650	regulator
D9E17_01680	COG1690	Belongs to the RtcB family
D9E17_01695	COG0058	SHG alpha-glucan phosphorylase activity
D9E17_01700	COG1640	4-alpha-glucanotransferase
D9E17_01705	COG2610	gluconate transmembrane transporter activity
D9E17_01715	COG1040	competence protein
D9E17_01725	COG5464	transposase or invertase
D9E17_01735	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
D9E17_01740	COG1918	ferrous iron import across plasma membrane
D9E17_01745	COG2183	response to ionizing radiation
D9E17_01750	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D9E17_01755	COG0745	RESPONSE REGULATOR receiver
D9E17_01760	COG2205	protein histidine kinase activity
D9E17_01770	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D9E17_01780	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D9E17_01785	COG1011	Hydrolase
D9E17_01795	COG0494	nUDIX hydrolase
D9E17_01800	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
D9E17_01805	COG4972	Pilus assembly protein
D9E17_01810	COG3166	PFAM Fimbrial assembly family protein
D9E17_01825	COG4796	Type ii and iii secretion system protein
D9E17_01840	COG3266	domain, Protein
D9E17_01845	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D9E17_01850	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D9E17_01855	COG0546	phosphoglycolate phosphatase activity
D9E17_01860	COG0180	Tryptophanyl-tRNA synthetase
D9E17_01870	COG2188	Transcriptional regulator
D9E17_01880	COG3457	Alanine racemase
D9E17_01885	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
D9E17_01890	COG1735	metal-dependent hydrolase with the TIM-barrel fold
D9E17_01905	COG0626	cystathionine gamma-synthase activity
D9E17_01910	COG2188	Transcriptional regulator
D9E17_01915	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_01920	COG1082	Xylose isomerase domain protein TIM barrel
D9E17_01925	COG2222	sugar isomerase
D9E17_01930	COG0531	amino acid
D9E17_01945	COG2116	formate transmembrane transporter activity
D9E17_01950	COG2146	nitrite reductase [NAD(P)H] activity
D9E17_01955	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9E17_01965	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D9E17_01975	COG2184	nucleotidyltransferase activity
D9E17_01980	COG0512	Glutamine amidotransferase of anthranilate synthase
D9E17_01985	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D9E17_01990	COG1289	transmembrane transporter activity
D9E17_01995	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D9E17_02000	COG1765	OsmC-like protein
D9E17_02005	COG3954	Phosphoribulokinase
D9E17_02015	COG0429	hydrolase of the alpha beta-hydrolase fold
D9E17_02020	COG0488	(ABC) transporter
D9E17_02035	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
D9E17_02040	COG1047	Peptidyl-prolyl cis-trans
D9E17_02050	COG0545	Peptidyl-prolyl cis-trans isomerase
D9E17_02055	COG2964	Protein conserved in bacteria
D9E17_02095	COG3979	chitinase
D9E17_02100	COG2906	2 iron, 2 sulfur cluster binding
D9E17_02105	COG2193	ferroxidase activity
D9E17_02110	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
D9E17_02115	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
D9E17_02120	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
D9E17_02125	COG3156	type II secretion system protein K
D9E17_02130	COG4795	General secretion pathway protein
D9E17_02135	COG2165	general secretion pathway protein
D9E17_02140	COG2165	general secretion pathway protein
D9E17_02145	COG2165	general secretion pathway protein
D9E17_02150	COG1459	type II secretion system
D9E17_02160	COG1450	Type ii and iii secretion system protein
D9E17_02165	COG3031	protein transport across the cell outer membrane
D9E17_02170	COG3267	Type II secretory pathway component ExeA
D9E17_02170	COG3409	Peptidoglycan-binding domain 1 protein
D9E17_02195	COG0089	rRNA binding
D9E17_02285	COG0201	protein transport
D9E17_02295	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
D9E17_02325	COG0789	Transcriptional regulator
D9E17_02330	COG3036	rescue of stalled ribosome
D9E17_02340	COG0569	domain protein
D9E17_02360	COG0758	DNA mediated transformation
D9E17_02370	COG0551	DNA topoisomerase type I activity
D9E17_02390	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D9E17_02435	COG1126	abc transporter atp-binding protein
D9E17_02440	COG0765	amino acid transport
D9E17_02445	COG4597	amino acid ABC transporter
D9E17_02450	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_02460	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9E17_02465	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_02470	COG1309	transcriptional regulator
D9E17_02480	COG2189	Belongs to the N(4) N(6)-methyltransferase family
D9E17_02490	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D9E17_02500	COG4145	pantothenate transmembrane transporter activity
D9E17_02505	COG3924	membrane
D9E17_02510	COG0439	Biotin carboxylase
D9E17_02515	COG0511	ligase activity, forming carbon-carbon bonds
D9E17_02520	COG0604	alcohol dehydrogenase
D9E17_02525	COG2200	EAL domain
D9E17_02525	COG2199	diguanylate cyclase activity
D9E17_02530	COG1077	Cell shape determining protein MreB Mrl
D9E17_02535	COG1792	Involved in formation and maintenance of cell shape
D9E17_02540	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D9E17_02550	COG1530	ribonuclease E activity
D9E17_02555	COG3164	Protein of unknown function
D9E17_02560	COG0312	modulator of DNA gyrase
D9E17_02565	COG0583	DNA-binding transcription factor activity
D9E17_02585	COG2732	(Barnase) inhibitor
D9E17_02605	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9E17_02610	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9E17_02615	COG3105	Protein conserved in bacteria
D9E17_02620	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
D9E17_02640	COG0625	glutathione transferase activity
D9E17_02645	COG2969	positive regulation of protein catabolic process
D9E17_02650	COG3069	C4-dicarboxylate transmembrane transporter activity
D9E17_02680	COG2731	YhcH YjgK YiaL family protein
D9E17_02690	COG4804	nuclease activity
D9E17_02695	COG0493	'glutamate synthase
D9E17_02700	COG0070	glutamate synthase
D9E17_02700	COG0067	glutamate synthase
D9E17_02700	COG0069	glutamate synthase activity
D9E17_02705	COG1242	4 iron, 4 sulfur cluster binding
D9E17_02710	COG0784	Response regulator, receiver
D9E17_02710	COG2198	Histidine kinase
D9E17_02710	COG5002	protein histidine kinase activity
D9E17_02715	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
D9E17_02725	COG0515	serine threonine protein kinase
D9E17_02730	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_02740	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_02745	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D9E17_02750	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
D9E17_02755	COG1137	ATPase activity
D9E17_02760	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
D9E17_02765	COG3117	lipopolysaccharide transmembrane transporter activity
D9E17_02770	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
D9E17_02775	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D9E17_02775	COG0517	IMP dehydrogenase activity
D9E17_02780	COG0530	calcium, potassium:sodium antiporter activity
D9E17_02785	COG1127	ABC transporter
D9E17_02790	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
D9E17_02795	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D9E17_02800	COG2854	intermembrane phospholipid transfer
D9E17_02805	COG3113	response to antibiotic
D9E17_02810	COG5007	Belongs to the BolA IbaG family
D9E17_02820	COG3423	Transcriptional regulator
D9E17_02825	COG0142	geranyltranstransferase activity
D9E17_02840	COG0697	spore germination
D9E17_02850	COG2027	D-alanyl-D-alanine carboxypeptidase
D9E17_02855	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D9E17_02860	COG1534	Rna-binding protein
D9E17_02870	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D9E17_02875	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D9E17_02885	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D9E17_02895	COG2194	sulfuric ester hydrolase activity
D9E17_02915	COG0195	Participates in both transcription termination and antitermination
D9E17_02930	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
D9E17_02945	COG4785	May be involved in cell division
D9E17_02955	COG0513	Belongs to the DEAD box helicase family
D9E17_02960	COG0814	amino acid
D9E17_02965	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9E17_02985	COG3153	acetyltransferase
D9E17_03000	COG0693	protein deglycase activity
D9E17_03005	COG0702	epimerase
D9E17_03010	COG0701	Predicted permease
D9E17_03015	COG2823	Periplasmic or secreted lipoprotein
D9E17_03020	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
D9E17_03030	COG3107	peptidoglycan biosynthetic process
D9E17_03035	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
D9E17_03040	COG3539	Fimbrial protein
D9E17_03045	COG3188	usher protein
D9E17_03050	COG3121	Chaperone
D9E17_03055	COG3539	Fimbrial protein
D9E17_03060	COG0363	glucosamine-6-phosphate deaminase activity
D9E17_03065	COG3716	PTS system mannose fructose sorbose family IID component
D9E17_03070	COG3715	PTS system
D9E17_03075	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_03085	COG2222	sugar isomerase
D9E17_03090	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D9E17_03095	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_03100	COG3716	PTS system mannose fructose sorbose family IID component
D9E17_03110	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_03120	COG1349	DNA-binding transcription factor activity
D9E17_03130	COG2002	toxin-antitoxin pair type II binding
D9E17_03135	COG2721	sulfolactate sulfo-lyase activity
D9E17_03140	COG2271	Major facilitator Superfamily
D9E17_03150	COG2084	Dehydrogenase
D9E17_03155	COG1929	Belongs to the glycerate kinase type-1 family
D9E17_03180	COG0583	DNA-binding transcription factor activity
D9E17_03185	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D9E17_03195	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
D9E17_03200	COG1882	Formate acetyltransferase
D9E17_03205	COG0251	oxidation-reduction process
D9E17_03210	COG1760	l-serine dehydratase
D9E17_03215	COG0814	amino acid
D9E17_03230	COG1741	Belongs to the pirin family
D9E17_03235	COG0583	DNA-binding transcription factor activity
D9E17_03240	COG3152	Membrane
D9E17_03245	COG3152	Membrane
D9E17_03250	COG0435	Glutathione S-transferase
D9E17_03255	COG2259	Doxx family
D9E17_03265	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
D9E17_03270	COG4575	ribosome binding
D9E17_03275	COG1422	Protein of unknown function (DUF1090)
D9E17_03285	COG0586	Pfam SNARE associated Golgi protein
D9E17_03290	COG2186	Transcriptional regulator
D9E17_03315	COG2271	Major facilitator Superfamily
D9E17_03325	COG2721	sulfolactate sulfo-lyase activity
D9E17_03335	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
D9E17_03340	COG0861	Integral membrane protein TerC family
D9E17_03345	COG0673	inositol 2-dehydrogenase activity
D9E17_03350	COG2949	membrane
D9E17_03355	COG1451	nucleotide metabolic process
D9E17_03365	COG4680	protein conserved in bacteria
D9E17_03370	COG5499	transcription regulator containing HTH domain
D9E17_03375	COG1902	pentaerythritol trinitrate reductase activity
D9E17_03375	COG0446	pyridine nucleotide-disulphide oxidoreductase
D9E17_03380	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
D9E17_03380	COG3408	Glycogen debranching enzyme
D9E17_03390	COG0531	amino acid
D9E17_03395	COG2731	YhcH YjgK YiaL family protein
D9E17_03400	COG3250	beta-galactosidase activity
D9E17_03405	COG1609	Transcriptional regulator
D9E17_03410	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9E17_03420	COG0840	transmembrane signaling receptor activity
D9E17_03425	COG1695	Transcriptional regulator
D9E17_03430	COG2375	cellular response to nickel ion
D9E17_03445	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D9E17_03450	COG0358	DNA primase activity
D9E17_03465	COG0471	metal ion transport
D9E17_03480	COG0583	DNA-binding transcription factor activity
D9E17_03490	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D9E17_03495	COG1968	undecaprenyl-diphosphatase activity
D9E17_03505	COG4991	sh3 domain protein
D9E17_03510	COG3025	triphosphatase activity
D9E17_03535	COG2268	Band 7 protein
D9E17_03540	COG1585	Membrane protein implicated in regulation of membrane protease activity
D9E17_03550	COG3539	Fimbrial protein
D9E17_03555	COG3121	Chaperone
D9E17_03560	COG3188	usher protein
D9E17_03565	COG3539	Fimbrial protein
D9E17_03570	COG2960	long-chain fatty acid transporting porin activity
D9E17_03585	COG3384	dioxygenase
D9E17_03590	COG0754	glutathionylspermidine amidase activity
D9E17_03600	COG1538	Outer membrane efflux protein
D9E17_03605	COG0494	nUDIX hydrolase
D9E17_03610	COG3151	Protein conserved in bacteria
D9E17_03615	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D9E17_03620	COG3150	esterase
D9E17_03625	COG0187	DNA topoisomerase II activity
D9E17_03630	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D9E17_03635	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9E17_03645	COG0642	Histidine kinase
D9E17_03650	COG0745	RESPONSE REGULATOR receiver
D9E17_03655	COG3111	PFAM Bacterial OB fold (BOF) protein
D9E17_03660	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D9E17_03670	COG2944	sequence-specific DNA binding
D9E17_03675	COG4166	transmembrane transport
D9E17_03680	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D9E17_03685	COG0204	Acyl-transferase
D9E17_03690	COG2132	Multicopper oxidase
D9E17_03695	COG1032	radical SAM domain protein
D9E17_03700	COG4238	major outer membrane lipoprotein
D9E17_03710	COG0656	L-ascorbic acid biosynthetic process
D9E17_03715	COG1979	alcohol dehydrogenase
D9E17_03720	COG2207	Transcriptional regulator
D9E17_03725	COG0586	Pfam SNARE associated Golgi protein
D9E17_03730	COG0626	cystathionine gamma-synthase activity
D9E17_03735	COG0811	peptide transport
D9E17_03740	COG0848	biopolymer transport protein
D9E17_03745	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_03755	COG0667	Aldo Keto reductase
D9E17_03770	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
D9E17_03775	COG0437	4 iron, 4 sulfur cluster binding
D9E17_03780	COG5557	Pfam Polysulphide reductase, NrfD
D9E17_03785	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
D9E17_03790	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D9E17_03795	COG1773	rubredoxin
D9E17_03800	COG0375	protein maturation
D9E17_03805	COG0298	carbon dioxide binding
D9E17_03810	COG0625	glutathione transferase activity
D9E17_03815	COG0754	glutathionylspermidine amidase activity
D9E17_03820	COG0306	phosphate transporter
D9E17_03825	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
D9E17_03830	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
D9E17_03835	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
D9E17_03840	COG2244	polysaccharide biosynthetic process
D9E17_03850	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
D9E17_03855	COG0795	lipopolysaccharide-transporting ATPase activity
D9E17_03865	COG0156	8-amino-7-oxononanoate synthase activity
D9E17_03870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
D9E17_03880	COG0318	PFAM AMP-dependent synthetase and ligase
D9E17_03885	COG0456	acetyltransferase
D9E17_03890	COG2186	Transcriptional regulator
D9E17_03895	COG0277	FAD linked oxidase domain protein
D9E17_03900	COG0277	FAD linked oxidase domain protein
D9E17_03905	COG0247	lactate metabolic process
D9E17_03910	COG3193	protein, possibly involved in utilization of glycolate and propanediol
D9E17_03915	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
D9E17_03920	COG1620	l-lactate permease
D9E17_03955	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D9E17_03970	COG1811	Na channel or pump
D9E17_03975	COG1982	Orn Lys Arg decarboxylase major
D9E17_03980	COG2211	Major facilitator Superfamily
D9E17_03995	COG1194	a g-specific adenine glycosylase
D9E17_04005	COG3171	Protein conserved in bacteria
D9E17_04015	COG0252	asparaginase activity
D9E17_04025	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D9E17_04040	COG0762	integral membrane protein
D9E17_04045	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D9E17_04050	COG2805	Type II/IV secretion system protein
D9E17_04065	COG0189	ligase activity
D9E17_04070	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D9E17_04075	COG2356	endonuclease I
D9E17_04085	COG2814	Major facilitator Superfamily
D9E17_04100	COG1166	arginine decarboxylase activity
D9E17_04110	COG0501	Belongs to the peptidase M48B family
D9E17_04115	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D9E17_04120	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_04125	COG2213	PTS system mannitol-specific
D9E17_04130	COG1063	alcohol dehydrogenase
D9E17_04135	COG1494	fructose-1,6-bisphosphatase
D9E17_04140	COG3722	fumarate hydratase activity
D9E17_04145	COG1072	(Pantothenic acid kinase))
D9E17_04160	COG0191	fructose-bisphosphate aldolase activity
D9E17_04165	COG0668	transmembrane transport
D9E17_04170	COG1279	arginine transmembrane transporter activity
D9E17_04175	COG2968	Membrane
D9E17_04180	COG0583	DNA-binding transcription factor activity
D9E17_04185	COG0427	acetyl-CoA hydrolase
D9E17_04190	COG1024	Enoyl-CoA hydratase
D9E17_04195	COG1703	isobutyryl-CoA mutase activity
D9E17_04200	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
D9E17_04200	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
D9E17_04220	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D9E17_04230	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D9E17_04250	COG0006	proline dipeptidase activity
D9E17_04255	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D9E17_04260	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D9E17_04285	COG2723	6-phospho-beta-galactosidase activity
D9E17_04295	COG1272	protein, Hemolysin III
D9E17_04305	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
D9E17_04315	COG0716	FMN binding
D9E17_04320	COG4974	Belongs to the 'phage' integrase family
D9E17_04325	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D9E17_04330	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D9E17_04340	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
D9E17_04360	COG2233	PERMEase
D9E17_04370	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_04375	COG2252	PERMEase
D9E17_04380	COG0402	S-adenosylhomocysteine deaminase activity
D9E17_04385	COG2233	PERMEase
D9E17_04390	COG1529	Aldehyde oxidase and xanthine dehydrogenase
D9E17_04390	COG2080	2 iron, 2 sulfur cluster binding
D9E17_04395	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
D9E17_04400	COG0402	S-adenosylhomocysteine deaminase activity
D9E17_04405	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_04405	COG0493	'glutamate synthase
D9E17_04410	COG2068	MobA-Related Protein
D9E17_04415	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D9E17_04420	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
D9E17_04420	COG3608	succinylglutamate desuccinylase aspartoacylase
D9E17_04425	COG0549	Belongs to the carbamate kinase family
D9E17_04435	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9E17_04440	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D9E17_04445	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
D9E17_04455	COG2080	2 iron, 2 sulfur cluster binding
D9E17_04460	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
D9E17_04465	COG1529	Aldehyde oxidase and xanthine dehydrogenase
D9E17_04470	COG4942	peptidase
D9E17_04485	COG3385	transposase activity
D9E17_04570	COG2197	response regulator
D9E17_04585	COG0457	Tetratricopeptide repeat
D9E17_04585	COG3710	Transcriptional regulator
D9E17_04590	COG0457	Tetratricopeptide repeat
D9E17_04620	COG3710	Transcriptional regulator
D9E17_04625	COG2771	luxR family
D9E17_04630	COG0814	amino acid
D9E17_04635	COG0183	Belongs to the thiolase family
D9E17_04645	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_04650	COG2814	Major facilitator Superfamily
D9E17_04655	COG1794	racemase activity, acting on amino acids and derivatives
D9E17_04660	COG0583	DNA-binding transcription factor activity
D9E17_04665	COG0019	diaminopimelate decarboxylase activity
D9E17_04670	COG1609	Transcriptional regulator
D9E17_04690	COG0667	Aldo Keto reductase
D9E17_04700	COG0861	Integral membrane protein TerC family
D9E17_04720	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
D9E17_04735	COG2165	general secretion pathway protein
D9E17_04740	COG4795	General secretion pathway protein
D9E17_04750	COG4967	type IV pilus modification protein PilV
D9E17_04755	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
D9E17_04765	COG1074	ATP-dependent DNA helicase activity
D9E17_04770	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D9E17_04775	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
D9E17_04775	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D9E17_04780	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9E17_04800	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
D9E17_04805	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D9E17_04810	COG2166	iron-sulfur cluster assembly
D9E17_04815	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D9E17_04825	COG0583	DNA-binding transcription factor activity
D9E17_04830	COG2363	Small membrane protein
D9E17_04840	COG1349	DNA-binding transcription factor activity
D9E17_04850	COG1070	Carbohydrate kinase
D9E17_04860	COG0738	Major facilitator superfamily
D9E17_04865	COG0235	Class ii aldolase
D9E17_04870	COG1454	alcohol dehydrogenase
D9E17_04880	COG1760	l-serine dehydratase
D9E17_04885	COG0814	amino acid
D9E17_04890	COG1611	Belongs to the LOG family
D9E17_04905	COG3098	single-species biofilm formation
D9E17_04910	COG0564	pseudouridine synthase activity
D9E17_04915	COG0716	FMN binding
D9E17_04920	COG2271	Major facilitator Superfamily
D9E17_04925	COG4948	Mandelate Racemase Muconate Lactonizing
D9E17_04930	COG4999	Histidine kinase
D9E17_04930	COG3850	Histidine kinase
D9E17_04930	COG3437	response regulator, receiver
D9E17_04930	COG2205	protein histidine kinase activity
D9E17_04935	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D9E17_04940	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D9E17_04945	COG2336	PFAM SpoVT AbrB
D9E17_04950	COG2337	Toxic component of a toxin-antitoxin (TA) module
D9E17_04955	COG3956	TIGRFAM MazG family protein
D9E17_04970	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
D9E17_04980	COG0602	queuosine metabolic process
D9E17_04985	COG1070	Carbohydrate kinase
D9E17_04990	COG2223	nitrite transmembrane transporter activity
D9E17_04995	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_05000	COG0277	FAD linked oxidase domain protein
D9E17_05005	COG0477	Major facilitator Superfamily
D9E17_05010	COG2086	electron transfer activity
D9E17_05015	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
D9E17_05020	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
D9E17_05025	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
D9E17_05030	COG0644	oxidoreductase
D9E17_05035	COG0720	synthase
D9E17_05085	COG1857	crispr-associated protein
D9E17_05100	COG1518	maintenance of DNA repeat elements
D9E17_05105	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D9E17_05110	COG2234	aminopeptidase activity
D9E17_05165	COG4942	peptidase
D9E17_05165	COG1388	LysM domain
D9E17_05170	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D9E17_05175	COG2610	gluconate transmembrane transporter activity
D9E17_05180	COG3622	Belongs to the hyi family
D9E17_05185	COG0235	Class ii aldolase
D9E17_05190	COG3395	kinase activity
D9E17_05195	COG2084	Dehydrogenase
D9E17_05200	COG1349	DNA-binding transcription factor activity
D9E17_05205	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
D9E17_05210	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
D9E17_05225	COG3604	Transcriptional regulator
D9E17_05230	COG0309	Hydrogenase expression formation protein (HypE)
D9E17_05235	COG0409	Hydrogenase expression formation protein
D9E17_05240	COG0298	carbon dioxide binding
D9E17_05245	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
D9E17_05250	COG0375	protein maturation
D9E17_05265	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_05270	COG0651	ATP synthesis coupled electron transport
D9E17_05275	COG0650	Formate hydrogenlyase subunit 4
D9E17_05280	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
D9E17_05280	COG3261	NADH dehydrogenase
D9E17_05285	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D9E17_05290	COG3260	NADH ubiquinone oxidoreductase 20
D9E17_05300	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D9E17_05305	COG2723	6-phospho-beta-galactosidase activity
D9E17_05310	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_05310	COG1263	PTS System
D9E17_05315	COG1609	Transcriptional regulator
D9E17_05320	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_05325	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
D9E17_05345	COG0517	IMP dehydrogenase activity
D9E17_05345	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D9E17_05350	COG1349	DNA-binding transcription factor activity
D9E17_05355	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_05360	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_05365	COG3731	PTS system glucitol sorbitol-specific IIA component
D9E17_05370	COG3732	PTS system glucitol sorbitol-specific
D9E17_05375	COG3730	PTS system glucitol sorbitol-specific
D9E17_05380	COG2951	lytic endotransglycosylase activity
D9E17_05385	COG1546	Belongs to the CinA family
D9E17_05435	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9E17_05440	COG1238	metal cluster binding
D9E17_05455	COG2814	Major facilitator Superfamily
D9E17_05460	COG1566	PFAM secretion protein HlyD family protein
D9E17_05465	COG1846	Transcriptional regulator
D9E17_05475	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
D9E17_05480	COG2814	Major facilitator Superfamily
D9E17_05485	COG2113	Glycine betaine
D9E17_05490	COG4176	ABC-type proline glycine betaine transport system permease component
D9E17_05495	COG4175	Glycine betaine
D9E17_05500	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9E17_05505	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9E17_05510	COG1780	Probably involved in ribonucleotide reductase function
D9E17_05515	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D9E17_05520	COG4575	ribosome binding
D9E17_05535	COG2916	Histone family protein nucleoid-structuring protein H-NS
D9E17_05540	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9E17_05545	COG0640	Transcriptional regulator
D9E17_05550	COG0401	homolog of Blt101
D9E17_05555	COG1652	LysM domain
D9E17_05560	COG1802	Transcriptional regulator
D9E17_05565	COG1113	amino acid transport
D9E17_05570	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D9E17_05575	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_05580	COG0579	oxidoreductase
D9E17_05700	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
D9E17_05710	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
D9E17_05720	COG1475	DNA binding
D9E17_05730	COG0582	viral genome integration into host DNA
D9E17_05745	COG2867	negative regulation of translational initiation
D9E17_05750	COG2914	Belongs to the UPF0125 (RnfH) family
D9E17_05755	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D9E17_05760	COG0497	DNA recombination
D9E17_05775	COG4536	flavin adenine dinucleotide binding
D9E17_05780	COG4137	Cytochrome C assembly protein
D9E17_05785	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
D9E17_05810	COG2885	chlorophyll binding
D9E17_05815	COG2199	diguanylate cyclase activity
D9E17_05830	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D9E17_05835	COG1605	Chorismate mutase
D9E17_05835	COG0287	Prephenate dehydrogenase
D9E17_05840	COG1605	Chorismate mutase
D9E17_05840	COG0077	Prephenate dehydratase
D9E17_05850	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D9E17_05855	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D9E17_05860	COG0564	pseudouridine synthase activity
D9E17_05870	COG0542	response to heat
D9E17_05895	COG0477	Major facilitator Superfamily
D9E17_05900	COG5544	Lipoprotein
D9E17_05905	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9E17_05910	COG0045	succinate-CoA ligase (ADP-forming) activity
D9E17_05910	COG1042	CoA-binding domain protein
D9E17_05910	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9E17_05920	COG3118	belongs to the thioredoxin family
D9E17_05925	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9E17_05945	COG0583	DNA-binding transcription factor activity
D9E17_05950	COG0513	Belongs to the DEAD box helicase family
D9E17_05955	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
D9E17_05960	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D9E17_05970	COG1595	DNA-templated transcription, initiation
D9E17_05975	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
D9E17_05980	COG3026	antisigma factor binding
D9E17_05985	COG3086	response to oxidative stress
D9E17_05995	COG0681	Belongs to the peptidase S26 family
D9E17_06015	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
D9E17_06030	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_06035	COG1737	Transcriptional regulator
D9E17_06040	COG0560	Phosphoserine phosphatase
D9E17_06045	COG0590	tRNA wobble adenosine to inosine editing
D9E17_06060	COG2205	protein histidine kinase activity
D9E17_06065	COG3170	Tfp pilus assembly protein FimV
D9E17_06070	COG2204	response regulator
D9E17_06075	COG0347	Belongs to the P(II) protein family
D9E17_06080	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9E17_06080	COG1017	nitric oxide dioxygenase activity
D9E17_06090	COG1940	carbohydrate kinase activity
D9E17_06100	COG1879	ABC-type sugar transport system periplasmic component
D9E17_06105	COG1129	ABC transporter
D9E17_06110	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9E17_06115	COG1063	alcohol dehydrogenase
D9E17_06120	COG2017	converts alpha-aldose to the beta-anomer
D9E17_06125	COG2259	Doxx family
D9E17_06150	COG4638	Rieske (2fe-2S)
D9E17_06155	COG0583	DNA-binding transcription factor activity
D9E17_06160	COG2814	Major facilitator Superfamily
D9E17_06165	COG3711	transcriptional antiterminator
D9E17_06170	COG1073	alpha beta
D9E17_06175	COG0483	inositol monophosphate 1-phosphatase activity
D9E17_06195	COG0822	iron-sulfur transferase activity
D9E17_06215	COG0633	Ferredoxin
D9E17_06220	COG2975	iron-sulfur cluster assembly
D9E17_06235	COG2897	thiosulfate sulfurtransferase activity
D9E17_06240	COG2373	Large extracellular alpha-helical protein
D9E17_06245	COG4953	penicillin-binding protein 1C
D9E17_06275	COG2976	Protein conserved in bacteria
D9E17_06290	COG1645	bacterial-type flagellum-dependent swarming motility
D9E17_06300	COG0517	IMP dehydrogenase activity
D9E17_06300	COG0516	GMP reductase activity
D9E17_06315	COG3133	Outer membrane lipoprotein
D9E17_06325	COG2200	EAL domain
D9E17_06330	COG0248	Ppx GppA phosphatase
D9E17_06335	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
D9E17_06340	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
D9E17_06355	COG2233	PERMEase
D9E17_06365	COG1393	Belongs to the ArsC family
D9E17_06370	COG4783	chaperone-mediated protein folding
D9E17_06375	COG0628	permease
D9E17_06380	COG2116	formate transmembrane transporter activity
D9E17_06385	COG3604	Transcriptional regulator
D9E17_06395	COG3260	NADH ubiquinone oxidoreductase 20
D9E17_06400	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D9E17_06405	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
D9E17_06405	COG3261	NADH dehydrogenase
D9E17_06410	COG0651	ATP synthesis coupled electron transport
D9E17_06415	COG4237	Hydrogenase 4 membrane
D9E17_06420	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9E17_06425	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9E17_06430	COG0650	Formate hydrogenlyase subunit 4
D9E17_06440	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_06445	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D9E17_06450	COG2716	regulation of RNA biosynthetic process
D9E17_06460	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
D9E17_06470	COG2321	neutral zinc metallopeptidase
D9E17_06480	COG0400	carboxylic ester hydrolase activity
D9E17_06495	COG1393	Belongs to the ArsC family
D9E17_06505	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9E17_06510	COG3850	Histidine kinase
D9E17_06515	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_06515	COG0493	'glutamate synthase
D9E17_06525	COG5342	invasion associated locus B
D9E17_06530	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D9E17_06535	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D9E17_06540	COG0280	phosphate acetyltransferase
D9E17_06540	COG0281	malic enzyme
D9E17_06545	COG4810	utilization protein
D9E17_06550	COG4917	ethanolamine utilization protein
D9E17_06555	COG4766	ethanolamine catabolic process
D9E17_06560	COG4812	Cobalamin adenosyltransferase
D9E17_06565	COG0280	phosphate acetyltransferase
D9E17_06570	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
D9E17_06575	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
D9E17_06580	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_06585	COG4820	ethanolamine utilization protein (EutJ)
D9E17_06590	COG1454	alcohol dehydrogenase
D9E17_06595	COG3192	ethanolamine utilization protein
D9E17_06600	COG4819	ethanolamine utilization protein
D9E17_06605	COG4303	Ethanolamine ammonia lyase large subunit
D9E17_06615	COG4816	utilization protein
D9E17_06620	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
D9E17_06625	COG2207	Transcriptional regulator
D9E17_06635	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9E17_06640	COG0456	acetyltransferase
D9E17_06655	COG2837	iron assimilation
D9E17_06660	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9E17_06665	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_06665	COG1263	PTS System
D9E17_06680	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_06685	COG4150	thiosulfate binding
D9E17_06690	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
D9E17_06695	COG4208	sulfate ABC transporter
D9E17_06700	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
D9E17_06705	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9E17_06710	COG3831	ATPase activity
D9E17_06710	COG4884	unkown
D9E17_06725	COG2190	(PTS) system
D9E17_06730	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9E17_06735	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_06740	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9E17_06760	COG3530	Putative quorum-sensing-regulated virulence factor
D9E17_06765	COG0385	Bile acid
D9E17_06770	COG0583	DNA-binding transcription factor activity
D9E17_06780	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
D9E17_06785	COG2211	Major facilitator Superfamily
D9E17_06795	COG0583	DNA-binding transcription factor activity
D9E17_06830	COG3415	Transposase
D9E17_06835	COG3415	Transposase
D9E17_06850	COG2199	diguanylate cyclase activity
D9E17_06850	COG2200	EAL domain
D9E17_06855	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9E17_06870	COG0038	chloride channel
D9E17_06880	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_06885	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_06890	COG0006	proline dipeptidase activity
D9E17_06895	COG1363	Peptidase, m42
D9E17_06900	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_06900	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_06900	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9E17_06905	COG2207	Transcriptional regulator
D9E17_06910	COG3279	Response regulator of the LytR AlgR family
D9E17_06915	COG3275	phosphorelay sensor kinase activity
D9E17_06920	COG0436	Aminotransferase
D9E17_06930	COG1560	Kdo2-lipid A biosynthetic process
D9E17_06955	COG0028	Belongs to the TPP enzyme family
D9E17_06960	COG0679	Auxin Efflux Carrier
D9E17_06965	COG1804	L-carnitine dehydratase bile acid-inducible protein F
D9E17_06970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_06970	COG2198	Histidine kinase
D9E17_06970	COG0784	Response regulator, receiver
D9E17_06970	COG2205	protein histidine kinase activity
D9E17_06975	COG2197	response regulator
D9E17_06980	COG1566	PFAM secretion protein HlyD family protein
D9E17_06985	COG0477	Major facilitator Superfamily
D9E17_06995	COG2610	gluconate transmembrane transporter activity
D9E17_07000	COG0583	DNA-binding transcription factor activity
D9E17_07010	COG2116	formate transmembrane transporter activity
D9E17_07015	COG2853	Lipoprotein
D9E17_07025	COG2067	long-chain fatty acid transport protein
D9E17_07030	COG3691	Protein conserved in bacteria
D9E17_07045	COG2062	phosphohistidine phosphatase, SixA
D9E17_07050	COG3539	Fimbrial protein
D9E17_07055	COG3188	usher protein
D9E17_07060	COG3121	Chaperone
D9E17_07065	COG3539	Fimbrial protein
D9E17_07070	COG3539	Fimbrial protein
D9E17_07075	COG3539	Fimbrial protein
D9E17_07105	COG0730	response to heat
D9E17_07110	COG3101	peptidyl-lysine hydroxylation
D9E17_07125	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D9E17_07130	COG2814	Major facilitator Superfamily
D9E17_07145	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D9E17_07155	COG0586	Pfam SNARE associated Golgi protein
D9E17_07165	COG0285	dihydrofolate synthase activity
D9E17_07170	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
D9E17_07175	COG1286	toxin biosynthetic process
D9E17_07180	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D9E17_07185	COG0163	prenyltransferase activity
D9E17_07190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_07195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_07200	COG4215	(ABC) transporter
D9E17_07205	COG4160	amino acid transport
D9E17_07210	COG4598	ABC transporter
D9E17_07220	COG1090	epimerase
D9E17_07225	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D9E17_07230	COG0625	glutathione transferase activity
D9E17_07235	COG0625	glutathione transferase activity
D9E17_07240	COG0622	Phosphoesterase
D9E17_07245	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
D9E17_07250	COG1288	antiporter activity
D9E17_07255	COG0857	belongs to the CobB CobQ family
D9E17_07255	COG0280	phosphate acetyltransferase
D9E17_07260	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
D9E17_07275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9E17_07280	COG0471	metal ion transport
D9E17_07280	COG0490	domain, Protein
D9E17_07290	COG0436	Aminotransferase
D9E17_07295	COG0583	DNA-binding transcription factor activity
D9E17_07315	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
D9E17_07320	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
D9E17_07335	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D9E17_07340	COG0839	Belongs to the complex I subunit 6 family
D9E17_07350	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9E17_07355	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D9E17_07385	COG2153	protein acetylation
D9E17_07390	COG4575	ribosome binding
D9E17_07395	COG1169	isochorismate synthase
D9E17_07410	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
D9E17_07420	COG0318	PFAM AMP-dependent synthetase and ligase
D9E17_07485	COG1414	Transcriptional regulator
D9E17_07505	COG5464	transposase or invertase
D9E17_07510	COG0247	lactate metabolic process
D9E17_07520	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D9E17_07525	COG2271	Major facilitator Superfamily
D9E17_07530	COG0584	glycerophosphoryl diester phosphodiesterase
D9E17_07540	COG3642	lipopolysaccharide core region biosynthetic process
D9E17_07545	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9E17_07550	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9E17_07555	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9E17_07560	COG3468	outer membrane autotransporter barrel domain protein
D9E17_07570	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D9E17_07580	COG2373	Large extracellular alpha-helical protein
D9E17_07585	COG5445	Predicted secreted protein (DUF2300)
D9E17_07590	COG4676	Protein conserved in bacteria
D9E17_07595	COG0784	Response regulator, receiver
D9E17_07595	COG2205	protein histidine kinase activity
D9E17_07600	COG2197	response regulator
D9E17_07605	COG2198	Histidine kinase
D9E17_07605	COG0642	Histidine kinase
D9E17_07610	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D9E17_07615	COG1477	protein flavinylation
D9E17_07620	COG2169	Transcriptional regulator
D9E17_07620	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D9E17_07625	COG3145	DNA-N1-methyladenine dioxygenase activity
D9E17_07630	COG4615	Cyclic peptide transporter
D9E17_07645	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_07645	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D9E17_07650	COG3062	negative regulation of establishment of protein localization
D9E17_07660	COG0437	4 iron, 4 sulfur cluster binding
D9E17_07665	COG0348	domain, Protein
D9E17_07670	COG3043	anaerobic respiration
D9E17_07675	COG3005	denitrification pathway
D9E17_07685	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9E17_07690	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9E17_07695	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9E17_07705	COG1138	Cytochrome C-type biogenesis protein
D9E17_07710	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9E17_07715	COG3088	subunit of a heme lyase
D9E17_07715	COG4235	cytochrome complex assembly
D9E17_07720	COG2197	response regulator
D9E17_07735	COG3083	sulfuric ester hydrolase activity
D9E17_07755	COG1061	Type III restriction enzyme res subunit
D9E17_07760	COG1187	pseudouridine synthase activity
D9E17_07765	COG2814	Major facilitator Superfamily
D9E17_07775	COG4172	Belongs to the ABC transporter superfamily
D9E17_07780	COG4239	(ABC) transporter, permease
D9E17_07785	COG4174	ABC transporter (Permease)
D9E17_07790	COG4166	transmembrane transport
D9E17_07795	COG2200	EAL domain
D9E17_07800	COG0791	NLP P60 protein
D9E17_07805	COG0671	phosphoesterase, PA-phosphatase related
D9E17_07810	COG0523	cobalamin synthesis protein
D9E17_07815	COG0246	Mannitol dehydrogenase
D9E17_07830	COG2814	Major facilitator Superfamily
D9E17_07835	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_07835	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_07840	COG1105	Belongs to the carbohydrate kinase PfkB family
D9E17_07845	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_07845	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D9E17_07845	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_07850	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_07855	COG2313	pseudouridylate synthase activity
D9E17_07860	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9E17_07865	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D9E17_07875	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9E17_07880	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_07880	COG1522	sequence-specific DNA binding
D9E17_07890	COG2855	membrane
D9E17_07895	COG0583	DNA-binding transcription factor activity
D9E17_07900	COG0833	amino acid
D9E17_07905	COG4771	TonB-dependent receptor
D9E17_07920	COG2311	Membrane
D9E17_07925	COG1609	Transcriptional regulator
D9E17_07930	COG1879	ABC-type sugar transport system periplasmic component
D9E17_07935	COG1129	ABC transporter
D9E17_07940	COG4211	Belongs to the binding-protein-dependent transport system permease family
D9E17_07945	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
D9E17_07945	COG0167	dihydroorotate dehydrogenase activity
D9E17_07950	COG0493	'glutamate synthase
D9E17_07960	COG2949	membrane
D9E17_07970	COG1346	cytolysis
D9E17_07980	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D9E17_07995	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_08000	COG0586	Pfam SNARE associated Golgi protein
D9E17_08010	COG1686	Belongs to the peptidase S11 family
D9E17_08015	COG0277	FAD linked oxidase domain protein
D9E17_08020	COG1472	Belongs to the glycosyl hydrolase 3 family
D9E17_08025	COG1732	Glycine betaine
D9E17_08030	COG1174	glycine betaine transport
D9E17_08035	COG1125	glycine betaine transport
D9E17_08040	COG1174	glycine betaine transport
D9E17_08050	COG0789	Transcriptional regulator
D9E17_08055	COG3275	phosphorelay sensor kinase activity
D9E17_08060	COG3279	Response regulator of the LytR AlgR family
D9E17_08065	COG4807	Protein conserved in bacteria
D9E17_08070	COG4808	Protein conserved in bacteria
D9E17_08075	COG4715	Zinc finger, swim domain protein
D9E17_08080	COG3552	Protein containing von Willebrand factor type A (VWA) domain
D9E17_08085	COG2425	protein containing a von Willebrand factor type A (vWA) domain
D9E17_08090	COG0714	Associated with various cellular activities
D9E17_08100	COG3831	ATPase activity
D9E17_08105	COG3831	ATPase activity
D9E17_08115	COG0489	protein tyrosine kinase activity
D9E17_08125	COG3539	Fimbrial protein
D9E17_08140	COG3188	usher protein
D9E17_08145	COG3539	Fimbrial protein
D9E17_08150	COG5455	response to cobalt ion
D9E17_08155	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
D9E17_08170	COG0351	phosphomethylpyrimidine kinase
D9E17_08175	COG3757	hydrolase, family 25
D9E17_08180	COG2188	Transcriptional regulator
D9E17_08185	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_08190	COG1397	ADP-ribosylglycohydrolase
D9E17_08195	COG2211	Major facilitator Superfamily
D9E17_08200	COG1830	Aldolase
D9E17_08230	COG3775	system Galactitol-specific IIC component
D9E17_08235	COG1063	alcohol dehydrogenase
D9E17_08275	COG0745	RESPONSE REGULATOR receiver
D9E17_08280	COG2205	protein histidine kinase activity
D9E17_08320	COG4245	von Willebrand factor, type A
D9E17_08330	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
D9E17_08335	COG0443	Heat shock 70 kDa protein
D9E17_08340	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
D9E17_08345	COG5002	protein histidine kinase activity
D9E17_08345	COG5001	Diguanylate cyclase
D9E17_08345	COG3447	MASE1 domain protein
D9E17_08350	COG0572	uridine kinase
D9E17_08360	COG2982	Protein involved in outer membrane biogenesis
D9E17_08365	COG1253	flavin adenine dinucleotide binding
D9E17_08435	COG1442	glycosyl transferase family 8
D9E17_08435	COG1216	Glycosyl transferase, family 2
D9E17_08515	COG0438	transferase activity, transferring glycosyl groups
D9E17_08525	COG0140	phosphoribosyl-ATP diphosphatase activity
D9E17_08525	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
D9E17_08540	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D9E17_08545	COG0131	Imidazoleglycerol-phosphate dehydratase
D9E17_08545	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D9E17_08570	COG2161	toxin-antitoxin pair type II binding
D9E17_08575	COG4115	mRNA cleavage
D9E17_08580	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9E17_08585	COG0583	DNA-binding transcription factor activity
D9E17_08595	COG0531	amino acid
D9E17_08600	COG2391	methyltransferase activity
D9E17_08605	COG0425	Belongs to the sulfur carrier protein TusA family
D9E17_08610	COG2925	Exonuclease
D9E17_08615	COG1686	Belongs to the peptidase S11 family
D9E17_08620	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D9E17_08625	COG1289	transmembrane transporter activity
D9E17_08635	COG4917	ethanolamine utilization protein
D9E17_08660	COG2003	Belongs to the UPF0758 family
D9E17_08730	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
D9E17_08745	COG1376	ErfK ybiS ycfS ynhG family protein
D9E17_08755	COG0583	DNA-binding transcription factor activity
D9E17_08760	COG0583	DNA-binding transcription factor activity
D9E17_08770	COG0534	Mate efflux family protein
D9E17_08785	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D9E17_08790	COG0477	Major facilitator Superfamily
D9E17_08800	COG1470	cell adhesion involved in biofilm formation
D9E17_08800	COG1388	LysM domain
D9E17_08805	COG1388	LysM domain
D9E17_08805	COG1470	cell adhesion involved in biofilm formation
D9E17_08810	COG1470	cell adhesion involved in biofilm formation
D9E17_08810	COG1388	LysM domain
D9E17_08815	COG2373	Large extracellular alpha-helical protein
D9E17_08815	COG1388	LysM domain
D9E17_08815	COG4932	domain protein
D9E17_08820	COG4771	TonB-dependent receptor
D9E17_08825	COG1021	2,3-dihydroxybenzoate-AMP ligase
D9E17_08845	COG3433	isochorismatase activity
D9E17_08845	COG2226	methyltransferase
D9E17_08845	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9E17_08860	COG1132	(ABC) transporter
D9E17_08865	COG2814	Major facilitator Superfamily
D9E17_08870	COG1169	isochorismate synthase
D9E17_08875	COG0582	viral genome integration into host DNA
D9E17_08895	COG3443	Belongs to the bacterial solute-binding protein 9 family
D9E17_08900	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
D9E17_08905	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D9E17_08910	COG2351	hydroxyisourate hydrolase activity
D9E17_08915	COG0745	RESPONSE REGULATOR receiver
D9E17_08920	COG2205	protein histidine kinase activity
D9E17_08935	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D9E17_08950	COG1418	mRNA catabolic process
D9E17_08955	COG0270	DNA (cytosine-5-)-methyltransferase activity
D9E17_08960	COG3727	T/G mismatch-specific endonuclease activity
D9E17_08965	COG0697	spore germination
D9E17_08970	COG2354	Protein conserved in bacteria
D9E17_08975	COG5475	Uncharacterized small protein (DUF2158)
D9E17_09005	COG2197	response regulator
D9E17_09010	COG1684	flagellar biosynthetic protein fliR
D9E17_09015	COG1987	bacterial-type flagellum assembly
D9E17_09020	COG1338	Plays a role in the flagellum-specific transport system
D9E17_09025	COG3190	flagellar
D9E17_09030	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9E17_09035	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9E17_09040	COG1580	Controls the rotational direction of flagella during chemotaxis
D9E17_09045	COG3144	bacterial-type flagellum assembly
D9E17_09050	COG2882	bacterial-type flagellum organization
D9E17_09055	COG1157	protein secretion by the type III secretion system
D9E17_09060	COG1317	bacterial-type flagellum organization
D9E17_09065	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9E17_09070	COG1766	The M ring may be actively involved in energy transduction
D9E17_09085	COG2135	peptidase activity
D9E17_09090	COG0425	Belongs to the sulfur carrier protein TusA family
D9E17_09095	COG2391	methyltransferase activity
D9E17_09105	COG0366	Alpha amylase catalytic
D9E17_09115	COG1516	flagellar protein fliS
D9E17_09120	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
D9E17_09140	COG1191	sigma factor activity
D9E17_09170	COG2197	response regulator
D9E17_09185	COG2197	response regulator
D9E17_09195	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D9E17_09215	COG3012	SEC-C Motif Domain Protein
D9E17_09215	COG3318	Belongs to the UPF0149 family
D9E17_09220	COG0814	amino acid
D9E17_09230	COG1528	Iron-storage protein
D9E17_09255	COG1528	Iron-storage protein
D9E17_09260	COG1879	ABC-type sugar transport system periplasmic component
D9E17_09265	COG1129	ABC transporter
D9E17_09270	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9E17_09275	COG1877	trehalose-phosphatase activity
D9E17_09285	COG0589	response to stress
D9E17_09300	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D9E17_09305	COG1360	Flagellar Motor Protein
D9E17_09310	COG2198	Histidine kinase
D9E17_09310	COG0643	Histidine kinase
D9E17_09320	COG0840	transmembrane signaling receptor activity
D9E17_09330	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
D9E17_09335	COG2201	protein-glutamate methylesterase activity
D9E17_09340	COG0745	RESPONSE REGULATOR receiver
D9E17_09345	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
D9E17_09350	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D9E17_09355	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D9E17_09365	COG3755	Protein conserved in bacteria
D9E17_09370	COG0018	arginyl-trna synthetase
D9E17_09375	COG3102	Protein conserved in bacteria
D9E17_09385	COG3005	denitrification pathway
D9E17_09390	COG0243	molybdopterin cofactor binding
D9E17_09405	COG3788	relative of glutathione S-transferase, MAPEG superfamily
D9E17_09410	COG1801	Protein of unknown function DUF72
D9E17_09495	COG1335	isochorismatase
D9E17_09505	COG0494	nUDIX hydrolase
D9E17_09510	COG0217	transcriptional regulatory protein
D9E17_09540	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9E17_09545	COG1121	(ABC) transporter
D9E17_09550	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
D9E17_09555	COG0739	heme binding
D9E17_09560	COG1560	Kdo2-lipid A biosynthetic process
D9E17_09565	COG0469	pyruvate kinase activity
D9E17_09570	COG1737	Transcriptional regulator
D9E17_09575	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D9E17_09580	COG0129	dihydroxy-acid dehydratase activity
D9E17_09585	COG0800	Aldolase
D9E17_09595	COG3141	response to X-ray
D9E17_09605	COG2979	Protein of unknown function (DUF533)
D9E17_09610	COG1770	oligopeptidase
D9E17_09615	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D9E17_09620	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9E17_09630	COG2372	response to copper ion
D9E17_09635	COG1276	copper resistance
D9E17_09645	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
D9E17_09665	COG3008	intermembrane lipid transfer
D9E17_09670	COG2995	paraquat-inducible protein a
D9E17_09675	COG1956	GAF domain-containing protein
D9E17_09685	COG0793	Belongs to the peptidase S41A family
D9E17_09695	COG2814	Major facilitator Superfamily
D9E17_09700	COG1414	Transcriptional regulator
D9E17_09725	COG1278	Cold shock
D9E17_09730	COG2226	methyltransferase
D9E17_09745	COG3716	PTS system mannose fructose sorbose family IID component
D9E17_09750	COG3715	PTS system
D9E17_09755	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_09755	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_09760	COG1253	flavin adenine dinucleotide binding
D9E17_09765	COG2200	EAL domain
D9E17_09770	COG1760	l-serine dehydratase
D9E17_09780	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D9E17_09795	COG0251	oxidation-reduction process
D9E17_09800	COG1199	ATP-dependent helicase activity
D9E17_09805	COG1214	PFAM Peptidase M22, glycoprotease
D9E17_09810	COG3065	identical protein binding
D9E17_09815	COG0318	PFAM AMP-dependent synthetase and ligase
D9E17_09820	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
D9E17_09825	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9E17_09830	COG4638	Rieske (2fe-2S)
D9E17_09835	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D9E17_09840	COG0473	3-isopropylmalate dehydrogenase activity
D9E17_09845	COG0583	DNA-binding transcription factor activity
D9E17_09855	COG3615	Tellurite resistance protein tehB
D9E17_09865	COG2261	transglycosylase associated protein
D9E17_09880	COG2199	diguanylate cyclase activity
D9E17_09880	COG2203	Gaf domain
D9E17_09885	COG3042	response to heat
D9E17_09890	COG3189	MarR family transcriptional regulator
D9E17_09895	COG2807	transmembrane transport
D9E17_09900	COG2207	Transcriptional regulator
D9E17_09915	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D9E17_09920	COG2199	diguanylate cyclase activity
D9E17_09925	COG2199	diguanylate cyclase activity
D9E17_09935	COG2766	serine protein kinase
D9E17_09940	COG3713	MltA-interacting MipA family protein
D9E17_09945	COG0656	L-ascorbic acid biosynthetic process
D9E17_09950	COG0676	glucose-6-phosphate 1-epimerase activity
D9E17_09955	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D9E17_09965	COG3139	Protein of unknown function (DUF1315)
D9E17_09970	COG1063	alcohol dehydrogenase
D9E17_09975	COG2271	Major facilitator Superfamily
D9E17_09980	COG1063	alcohol dehydrogenase
D9E17_09985	COG0191	fructose-bisphosphate aldolase activity
D9E17_09990	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_09995	COG0667	Aldo Keto reductase
D9E17_10000	COG1349	DNA-binding transcription factor activity
D9E17_10020	COG1335	isochorismatase
D9E17_10025	COG0252	asparaginase activity
D9E17_10030	COG0616	signal peptide processing
D9E17_10035	COG0778	Nitroreductase
D9E17_10045	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D9E17_10050	COG0443	Heat shock 70 kDa protein
D9E17_10055	COG0484	heat shock protein binding
D9E17_10060	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D9E17_10070	COG0494	nUDIX hydrolase
D9E17_10075	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D9E17_10080	COG2897	thiosulfate sulfurtransferase activity
D9E17_10085	COG4136	ATPase activity
D9E17_10090	COG4135	transport system, permease component
D9E17_10095	COG4134	Bacterial extracellular solute-binding protein
D9E17_10100	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D9E17_10105	COG0398	Pfam SNARE associated Golgi protein
D9E17_10115	COG0398	Pfam SNARE associated Golgi protein
D9E17_10120	COG0708	Exodeoxyribonuclease III
D9E17_10130	COG3138	arginine N-succinyltransferase
D9E17_10150	COG3678	ATP-independent chaperone mediated protein folding
D9E17_10160	COG0322	excinuclease ABC activity
D9E17_10170	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D9E17_10175	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9E17_10180	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9E17_10185	COG1447	Phosphotransferase system cellobiose-specific component IIA
D9E17_10190	COG1917	Cupin 2, conserved barrel domain protein
D9E17_10190	COG2169	Transcriptional regulator
D9E17_10195	COG1486	melibiose metabolic process
D9E17_10205	COG0753	catalase activity
D9E17_10225	COG1988	membrane-bound metal-dependent
D9E17_10230	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9E17_10250	COG1105	Belongs to the carbohydrate kinase PfkB family
D9E17_10255	COG3137	Salt-induced outer membrane protein
D9E17_10315	COG0386	Belongs to the glutathione peroxidase family
D9E17_10325	COG0791	NLP P60 protein
D9E17_10330	COG2200	EAL domain
D9E17_10340	COG4256	Hemin uptake protein
D9E17_10345	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D9E17_10355	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9E17_10355	COG0574	Belongs to the PEP-utilizing enzyme family
D9E17_10360	COG0318	PFAM AMP-dependent synthetase and ligase
D9E17_10365	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
D9E17_10370	COG0644	oxidoreductase
D9E17_10375	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
D9E17_10380	COG2086	electron transfer activity
D9E17_10385	COG1917	Cupin 2, conserved barrel domain protein
D9E17_10385	COG2207	Transcriptional regulator
D9E17_10390	COG1960	acyl-CoA dehydrogenase activity
D9E17_10395	COG4670	ketone body catabolic process
D9E17_10410	COG2271	Major facilitator Superfamily
D9E17_10415	COG0738	Major facilitator superfamily
D9E17_10430	COG0628	permease
D9E17_10435	COG0277	FAD linked oxidase domain protein
D9E17_10435	COG0247	lactate metabolic process
D9E17_10440	COG2050	protein possibly involved in aromatic compounds catabolism
D9E17_10450	COG0316	Belongs to the HesB IscA family
D9E17_10455	COG0719	Fe-S assembly protein
D9E17_10460	COG0396	ATPase activity
D9E17_10465	COG0719	Fe-S assembly protein
D9E17_10480	COG1376	ErfK ybiS ycfS ynhG family protein
D9E17_10485	COG4238	major outer membrane lipoprotein
D9E17_10490	COG0469	pyruvate kinase activity
D9E17_10500	COG0437	4 iron, 4 sulfur cluster binding
D9E17_10505	COG2414	aldehyde ferredoxin oxidoreductase
D9E17_10515	COG0437	4 iron, 4 sulfur cluster binding
D9E17_10520	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
D9E17_10530	COG4529	Protein conserved in bacteria
D9E17_10550	COG3468	outer membrane autotransporter barrel domain protein
D9E17_10560	COG0307	riboflavin synthase, alpha
D9E17_10565	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D9E17_10570	COG2814	Major facilitator Superfamily
D9E17_10575	COG0583	DNA-binding transcription factor activity
D9E17_10590	COG2814	Major facilitator Superfamily
D9E17_10595	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D9E17_10600	COG0791	NLP P60 protein
D9E17_10605	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
D9E17_10610	COG1201	RNA secondary structure unwinding
D9E17_10620	COG0346	lactoylglutathione lyase activity
D9E17_10625	COG1902	pentaerythritol trinitrate reductase activity
D9E17_10630	COG1309	transcriptional regulator
D9E17_10635	COG3313	Fe-S protein
D9E17_10640	COG4989	oxidoreductase activity
D9E17_10645	COG2032	superoxide dismutase activity
D9E17_10650	COG1289	transmembrane transporter activity
D9E17_10655	COG1566	PFAM secretion protein HlyD family protein
D9E17_10670	COG3133	Outer membrane lipoprotein
D9E17_10680	COG3895	Periplasmic Protein
D9E17_10695	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
D9E17_10700	COG0625	glutathione transferase activity
D9E17_10705	COG3104	oligopeptide transport
D9E17_10710	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D9E17_10720	COG4659	FMN binding
D9E17_10760	COG0673	inositol 2-dehydrogenase activity
D9E17_10770	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D9E17_10775	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_10775	COG1263	PTS System
D9E17_10780	COG1609	Transcriptional regulator
D9E17_10785	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_10790	COG1309	transcriptional regulator
D9E17_10795	COG3250	beta-galactosidase activity
D9E17_10820	COG5339	Protein conserved in bacteria
D9E17_10825	COG1482	cell wall glycoprotein biosynthetic process
D9E17_10830	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
D9E17_10830	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
D9E17_10835	COG0114	fumarate hydratase activity
D9E17_10845	COG2205	protein histidine kinase activity
D9E17_10850	COG0745	RESPONSE REGULATOR receiver
D9E17_10855	COG3136	membrane protein required for alginate biosynthesis
D9E17_10860	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_10865	COG0531	amino acid
D9E17_10875	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
D9E17_10880	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
D9E17_10885	COG0628	permease
D9E17_10905	COG3591	Belongs to the peptidase S1B family
D9E17_10920	COG2814	Major facilitator Superfamily
D9E17_10925	COG0583	DNA-binding transcription factor activity
D9E17_10930	COG1940	carbohydrate kinase activity
D9E17_10935	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D9E17_10945	COG3381	protein complex oligomerization
D9E17_10950	COG3302	dmso reductase anchor subunit
D9E17_10955	COG0437	4 iron, 4 sulfur cluster binding
D9E17_10960	COG0243	molybdopterin cofactor binding
D9E17_10965	COG0243	molybdopterin cofactor binding
D9E17_10980	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9E17_10995	COG4948	Mandelate Racemase Muconate Lactonizing
D9E17_11000	COG1063	alcohol dehydrogenase
D9E17_11010	COG0582	viral genome integration into host DNA
D9E17_11020	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D9E17_11040	COG0484	heat shock protein binding
D9E17_11050	COG1278	Cold shock
D9E17_11055	COG1278	Cold shock
D9E17_11070	COG3772	lysozyme
D9E17_11080	COG1278	Cold shock
D9E17_11115	COG4220	transposase activity
D9E17_11130	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
D9E17_11135	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
D9E17_11150	COG0477	Major facilitator Superfamily
D9E17_11155	COG0246	Mannitol dehydrogenase
D9E17_11165	COG1802	Transcriptional regulator
D9E17_11170	COG4221	oxidoreductase activity
D9E17_11175	COG0339	signal peptide processing
D9E17_11180	COG1546	Belongs to the CinA family
D9E17_11185	COG3111	PFAM Bacterial OB fold (BOF) protein
D9E17_11190	COG3706	GGDEF domain
D9E17_11200	COG2814	Major facilitator Superfamily
D9E17_11205	COG0697	spore germination
D9E17_11215	COG4977	sequence-specific DNA binding
D9E17_11220	COG1846	Transcriptional regulator
D9E17_11240	COG0583	DNA-binding transcription factor activity
D9E17_11245	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_11250	COG2066	Belongs to the glutaminase family
D9E17_11260	COG2199	diguanylate cyclase activity
D9E17_11270	COG3781	membrane
D9E17_11280	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D9E17_11310	COG2390	Transcriptional regulator
D9E17_11320	COG3210	domain, Protein
D9E17_11320	COG2911	Protein conserved in bacteria
D9E17_11325	COG1396	sequence-specific DNA binding
D9E17_11330	COG3550	peptidyl-serine autophosphorylation
D9E17_11345	COG3539	Fimbrial protein
D9E17_11350	COG3539	Fimbrial protein
D9E17_11355	COG3539	Fimbrial protein
D9E17_11360	COG0243	molybdopterin cofactor binding
D9E17_11375	COG3119	arylsulfatase activity
D9E17_11380	COG0641	radical SAM
D9E17_11390	COG4178	(ABC) transporter
D9E17_11395	COG4771	TonB-dependent receptor
D9E17_11400	COG0612	Peptidase, M16
D9E17_11405	COG0076	glutamate decarboxylase activity
D9E17_11410	COG0531	amino acid
D9E17_11420	COG3706	GGDEF domain
D9E17_11425	COG2202	Pas domain
D9E17_11425	COG2200	EAL domain
D9E17_11425	COG2199	diguanylate cyclase activity
D9E17_11430	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
D9E17_11435	COG0747	negative chemotaxis
D9E17_11440	COG0601	transmembrane transport
D9E17_11445	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9E17_11450	COG0444	Belongs to the ABC transporter superfamily
D9E17_11455	COG4608	Belongs to the ABC transporter superfamily
D9E17_11460	COG1764	response to oxidative stress
D9E17_11480	COG1064	alcohol dehydrogenase
D9E17_11485	COG3093	addiction module antidote protein HigA
D9E17_11490	COG2864	formate dehydrogenase
D9E17_11495	COG0437	4 iron, 4 sulfur cluster binding
D9E17_11505	COG0697	spore germination
D9E17_11515	COG2223	nitrite transmembrane transporter activity
D9E17_11520	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D9E17_11525	COG1140	nitrate reductase beta subunit
D9E17_11530	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D9E17_11535	COG2181	nitrate reductase activity
D9E17_11540	COG0384	phenazine biosynthesis protein PhzF
D9E17_11545	COG2162	N-hydroxyarylamine O-acetyltransferase activity
D9E17_11550	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D9E17_11585	COG3501	Rhs element vgr protein
D9E17_11595	COG0625	glutathione transferase activity
D9E17_11600	COG1113	amino acid transport
D9E17_11605	COG3391	amine dehydrogenase activity
D9E17_11610	COG4772	TonB-dependent receptor
D9E17_11615	COG1802	Transcriptional regulator
D9E17_11620	COG2130	NADP-dependent
D9E17_11625	COG1247	-acetyltransferase
D9E17_11630	COG3238	Protein conserved in bacteria
D9E17_11655	COG1177	transmembrane transport
D9E17_11660	COG1176	ABC-type spermidine putrescine transport system, permease component I
D9E17_11665	COG3842	ATPase activity
D9E17_11670	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D9E17_11675	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9E17_11680	COG1598	PFAM Uncharacterised protein family UPF0150
D9E17_11700	COG1396	sequence-specific DNA binding
D9E17_11705	COG3135	benzoate transporter
D9E17_11710	COG0675	Transposase, IS605 OrfB family
D9E17_11725	COG0500	methyltransferase
D9E17_11730	COG1275	C4-dicarboxylate transporter malic acid transport protein
D9E17_11735	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D9E17_11740	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9E17_11745	COG2841	Protein conserved in bacteria
D9E17_11755	COG5383	Protein conserved in bacteria
D9E17_11760	COG0583	DNA-binding transcription factor activity
D9E17_11765	COG0840	transmembrane signaling receptor activity
D9E17_11785	COG3038	cytochrome b561
D9E17_11790	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D9E17_11795	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_11800	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D9E17_11805	COG1643	Atp-dependent helicase
D9E17_11815	COG2453	phosphatase
D9E17_11815	COG0671	phosphoesterase, PA-phosphatase related
D9E17_11820	COG2267	carboxylic ester hydrolase activity
D9E17_11825	COG4589	Belongs to the CDS family
D9E17_11830	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D9E17_11860	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D9E17_11865	COG3327	negative regulation of DNA-templated transcription, initiation
D9E17_11870	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
D9E17_11875	COG0183	Belongs to the thiolase family
D9E17_11880	COG2050	protein possibly involved in aromatic compounds catabolism
D9E17_11885	COG1250	3-hydroxyacyl-CoA dehydrogenase
D9E17_11890	COG1024	Enoyl-CoA hydratase
D9E17_11895	COG1024	Enoyl-CoA hydratase
D9E17_11900	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9E17_11905	COG2151	metal-sulfur cluster biosynthetic enzyme
D9E17_11910	COG3396	Phenylacetate-CoA oxygenase
D9E17_11915	COG3460	Phenylacetate-CoA oxygenase
D9E17_11920	COG3396	Phenylacetate-CoA oxygenase
D9E17_11925	COG2030	dehydratase
D9E17_11925	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_11930	COG3733	amine oxidase
D9E17_11935	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_11940	COG2207	Transcriptional regulator
D9E17_11945	COG3784	Protein of unknown function (DUF1318)
D9E17_11955	COG2911	Protein conserved in bacteria
D9E17_11960	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D9E17_11965	COG3187	Heat shock protein
D9E17_11970	COG3042	response to heat
D9E17_11975	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D9E17_11975	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
D9E17_11975	COG1013	pyruvate-flavodoxin oxidoreductase activity
D9E17_11975	COG0674	pyruvate-flavodoxin oxidoreductase activity
D9E17_11980	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D9E17_11985	COG0589	response to stress
D9E17_11995	COG0513	Belongs to the DEAD box helicase family
D9E17_12005	COG3706	GGDEF domain
D9E17_12010	COG2840	Smr protein MutS2
D9E17_12015	COG0583	DNA-binding transcription factor activity
D9E17_12020	COG1473	amidohydrolase
D9E17_12025	COG1473	amidohydrolase
D9E17_12030	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
D9E17_12035	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D9E17_12040	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D9E17_12045	COG0589	response to stress
D9E17_12050	COG3182	Iron-regulated membrane protein
D9E17_12055	COG0668	transmembrane transport
D9E17_12060	COG4166	transmembrane transport
D9E17_12065	COG0583	DNA-binding transcription factor activity
D9E17_12070	COG1073	alpha beta
D9E17_12085	COG2866	Carboxypeptidase
D9E17_12090	COG4948	Mandelate Racemase Muconate Lactonizing
D9E17_12095	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
D9E17_12100	COG3283	Transcriptional regulator of aromatic amino acids metabolism
D9E17_12110	COG3106	COG3106 Predicted ATPase
D9E17_12115	COG1609	Transcriptional regulator
D9E17_12125	COG3842	ATPase activity
D9E17_12130	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9E17_12135	COG1554	hydrolase, family 65, central catalytic
D9E17_12140	COG0673	inositol 2-dehydrogenase activity
D9E17_12150	COG1063	alcohol dehydrogenase
D9E17_12155	COG0395	ABC-type sugar transport system, permease component
D9E17_12160	COG1175	transmembrane transport
D9E17_12165	COG1653	transport
D9E17_12170	COG0366	Alpha amylase catalytic
D9E17_12175	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9E17_12185	COG1983	PspC domain protein
D9E17_12195	COG1842	Phage shock protein A
D9E17_12200	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D9E17_12205	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D9E17_12210	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D9E17_12215	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_12220	COG1396	sequence-specific DNA binding
D9E17_12220	COG1917	Cupin 2, conserved barrel domain protein
D9E17_12225	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
D9E17_12230	COG0174	glutamine synthetase
D9E17_12240	COG0531	amino acid
D9E17_12250	COG4166	transmembrane transport
D9E17_12255	COG4168	peptide transport system, permease
D9E17_12260	COG4171	peptide transport system, permease
D9E17_12265	COG4172	Belongs to the ABC transporter superfamily
D9E17_12270	COG4172	Belongs to the ABC transporter superfamily
D9E17_12275	COG2852	Protein conserved in bacteria
D9E17_12280	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D9E17_12285	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D9E17_12285	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D9E17_12300	COG5001	Diguanylate cyclase
D9E17_12310	COG1349	DNA-binding transcription factor activity
D9E17_12320	COG0023	Translation Initiation Factor
D9E17_12330	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
D9E17_12335	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
D9E17_12340	COG0671	phosphoesterase, PA-phosphatase related
D9E17_12350	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
D9E17_12375	COG0583	DNA-binding transcription factor activity
D9E17_12380	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D9E17_12390	COG0616	signal peptide processing
D9E17_12395	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_12400	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
D9E17_12405	COG1187	pseudouridine synthase activity
D9E17_12415	COG0009	L-threonylcarbamoyladenylate synthase
D9E17_12420	COG0613	PHP domain protein
D9E17_12430	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D9E17_12435	COG0512	Glutamine amidotransferase of anthranilate synthase
D9E17_12435	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D9E17_12440	COG0134	indole-3-glycerol-phosphate synthase activity
D9E17_12440	COG0135	phosphoribosylanthranilate isomerase activity
D9E17_12455	COG3729	General stress protein
D9E17_12460	COG3685	Protein conserved in bacteria
D9E17_12465	COG3685	Protein conserved in bacteria
D9E17_12470	COG3047	cAMP biosynthetic process
D9E17_12490	COG1607	acyl-coa hydrolase
D9E17_12495	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
D9E17_12500	COG2350	Protein conserved in bacteria
D9E17_12505	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D9E17_12525	COG4608	Belongs to the ABC transporter superfamily
D9E17_12530	COG0444	Belongs to the ABC transporter superfamily
D9E17_12535	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9E17_12540	COG0601	transmembrane transport
D9E17_12545	COG4166	transmembrane transport
D9E17_12550	COG2095	MarC family integral membrane protein
D9E17_12555	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_12555	COG1454	alcohol dehydrogenase
D9E17_12560	COG1435	thymidine kinase activity
D9E17_12565	COG2916	Histone family protein nucleoid-structuring protein H-NS
D9E17_12570	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D9E17_12575	COG0745	RESPONSE REGULATOR receiver
D9E17_12580	COG1752	Esterase of the alpha-beta hydrolase superfamily
D9E17_12590	COG0788	formyltetrahydrofolate deformylase activity
D9E17_12625	COG2181	nitrate reductase activity
D9E17_12630	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D9E17_12635	COG1140	nitrate reductase beta subunit
D9E17_12640	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D9E17_12645	COG2223	nitrite transmembrane transporter activity
D9E17_12650	COG3850	Histidine kinase
D9E17_12655	COG2197	response regulator
D9E17_12660	COG4932	domain protein
D9E17_12665	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
D9E17_12670	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
D9E17_12675	COG4572	Cation transport regulator
D9E17_12680	COG0387	Pfam Sodium calcium exchanger
D9E17_12725	COG2912	Transglutaminase-like superfamily
D9E17_12730	COG3094	Invasion gene expression up-regulator, SirB
D9E17_12735	COG2890	protein-(glutamine-N5) methyltransferase activity
D9E17_12760	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
D9E17_12765	COG0659	secondary active sulfate transmembrane transporter activity
D9E17_12780	COG0012	GTP binding
D9E17_12785	COG3468	outer membrane autotransporter barrel domain protein
D9E17_12790	COG3284	Transcriptional regulator
D9E17_12795	COG2376	Dihydroxyacetone kinase
D9E17_12800	COG1461	Dihydroxyacetone kinase
D9E17_12805	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9E17_12805	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_12805	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
D9E17_12825	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
D9E17_12835	COG1619	proteins homologs of microcin C7 resistance protein MccF
D9E17_12845	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D9E17_12855	COG2719	SpoVR family
D9E17_12870	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
D9E17_12875	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D9E17_12880	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D9E17_12895	COG0179	Fumarylacetoacetate (FAA) hydrolase
D9E17_12920	COG2894	cell division
D9E17_12970	COG2200	EAL domain
D9E17_12995	COG2200	EAL domain
D9E17_13000	COG0789	Transcriptional regulator
D9E17_13005	COG5562	phage envelope protein
D9E17_13020	COG0538	isocitrate dehydrogenase activity
D9E17_13025	COG1187	pseudouridine synthase activity
D9E17_13045	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D9E17_13050	COG0745	RESPONSE REGULATOR receiver
D9E17_13055	COG2205	protein histidine kinase activity
D9E17_13060	COG2850	peptidyl-arginine hydroxylation
D9E17_13075	COG1176	ABC-type spermidine putrescine transport system, permease component I
D9E17_13080	COG1177	transmembrane transport
D9E17_13085	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D9E17_13095	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
D9E17_13100	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
D9E17_13110	COG4591	ABC-type transport system involved in lipoprotein release permease component
D9E17_13115	COG1136	(ABC) transporter
D9E17_13120	COG4591	ABC-type transport system involved in lipoprotein release permease component
D9E17_13130	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D9E17_13135	COG1388	LysM domain
D9E17_13135	COG1376	ErfK ybiS ycfS ynhG family protein
D9E17_13145	COG1309	transcriptional regulator
D9E17_13150	COG3134	Outer membrane lipoprotein
D9E17_13155	COG1252	NADH dehydrogenase
D9E17_13175	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
D9E17_13180	COG5633	Lipoprotein
D9E17_13185	COG0537	adenosine 5'-monophosphoramidase activity
D9E17_13190	COG4773	Receptor
D9E17_13195	COG1263	PTS System
D9E17_13195	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_13200	COG0084	hydrolase, TatD family'
D9E17_13205	COG0470	DNA polymerase III
D9E17_13215	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D9E17_13220	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9E17_13225	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D9E17_13235	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_13240	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D9E17_13260	COG1399	metal-binding, possibly nucleic acid-binding protein
D9E17_13270	COG0564	pseudouridine synthase activity
D9E17_13275	COG1530	ribonuclease E activity
D9E17_13280	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9E17_13285	COG1256	bacterial-type flagellum assembly
D9E17_13290	COG3951	Flagellar rod assembly protein muramidase FlgJ
D9E17_13290	COG1705	Flagellar rod assembly protein muramidase FlgJ
D9E17_13305	COG4786	Flagellar basal body rod
D9E17_13310	COG4787	bacterial-type flagellum-dependent cell motility
D9E17_13315	COG1749	Flagellar hook protein flgE
D9E17_13320	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
D9E17_13325	COG1558	bacterial-type flagellum-dependent cell motility
D9E17_13330	COG1815	bacterial-type flagellum-dependent cell motility
D9E17_13335	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
D9E17_13340	COG2747	anti-sigma28 factor FlgM
D9E17_13345	COG3418	PFAM FlgN family protein
D9E17_13350	COG0728	peptidoglycan biosynthetic process
D9E17_13355	COG0673	inositol 2-dehydrogenase activity
D9E17_13365	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9E17_13375	COG2999	glutathione oxidoreductase activity
D9E17_13410	COG3038	cytochrome b561
D9E17_13415	COG2353	YceI-like domain
D9E17_13425	COG1560	Kdo2-lipid A biosynthetic process
D9E17_13440	COG5645	(Lipo)protein
D9E17_13445	COG2943	transferase activity, transferring hexosyl groups
D9E17_13460	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9E17_13465	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
D9E17_13495	COG2197	response regulator
D9E17_13510	COG1462	curli production assembly transport component CsgG
D9E17_13520	COG3381	protein complex oligomerization
D9E17_13570	COG3706	GGDEF domain
D9E17_13575	COG0457	Tetratricopeptide repeat
D9E17_13580	COG0726	polysaccharide deacetylase
D9E17_13580	COG1649	PFAM Uncharacterised BCR, COG1649
D9E17_13585	COG1215	transferase activity, transferring glycosyl groups
D9E17_13590	COG3658	cytochrome
D9E17_13595	COG1702	phosphate starvation-inducible protein PhoH
D9E17_13600	COG2837	iron assimilation
D9E17_13605	COG2822	iron ion transport
D9E17_13610	COG0672	)-iron permease
D9E17_13615	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9E17_13625	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
D9E17_13625	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
D9E17_13625	COG0506	proline dehydrogenase activity
D9E17_13630	COG1309	transcriptional regulator
D9E17_13645	COG1335	isochorismatase
D9E17_13655	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
D9E17_13670	COG2233	PERMEase
D9E17_13675	COG3729	General stress protein
D9E17_13710	COG3381	protein complex oligomerization
D9E17_13715	COG0243	molybdopterin cofactor binding
D9E17_13720	COG3005	denitrification pathway
D9E17_13725	COG0745	RESPONSE REGULATOR receiver
D9E17_13730	COG1879	ABC-type sugar transport system periplasmic component
D9E17_13735	COG2198	Histidine kinase
D9E17_13735	COG2205	protein histidine kinase activity
D9E17_13735	COG0784	Response regulator, receiver
D9E17_13740	COG0348	domain, Protein
D9E17_13760	COG1278	Cold shock
D9E17_13765	COG1278	Cold shock
D9E17_13790	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D9E17_13795	COG1596	polysaccharide export
D9E17_13800	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D9E17_13805	COG0489	protein tyrosine kinase activity
D9E17_13805	COG3206	protein involved in exopolysaccharide biosynthesis
D9E17_13820	COG1294	oxidase, subunit
D9E17_13825	COG1271	oxidase subunit
D9E17_13830	COG1773	rubredoxin
D9E17_13835	COG1999	signal sequence binding
D9E17_13840	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D9E17_13845	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
D9E17_13850	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
D9E17_13855	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
D9E17_13865	COG0670	Belongs to the BI1 family
D9E17_13870	COG2920	part of a sulfur-relay system
D9E17_13875	COG1254	Belongs to the acylphosphatase family
D9E17_13890	COG1832	CoA-binding protein
D9E17_13905	COG0210	DNA helicase
D9E17_13910	COG3304	Inner membrane component domain
D9E17_13915	COG1289	transmembrane transporter activity
D9E17_13920	COG3070	regulator of competence-specific genes
D9E17_13930	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D9E17_13930	COG2885	chlorophyll binding
D9E17_13940	COG1067	ATP-dependent peptidase activity
D9E17_13950	COG3130	regulation of translation
D9E17_13955	COG3009	Protein conserved in bacteria
D9E17_13960	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D9E17_13960	COG3008	intermembrane lipid transfer
D9E17_13965	COG2995	paraquat-inducible protein a
D9E17_13970	COG0488	(ABC) transporter
D9E17_13980	COG0633	Ferredoxin
D9E17_13980	COG3217	Mosc domain protein beta barrel domain protein
D9E17_13995	COG3121	Chaperone
D9E17_14000	COG3539	Fimbrial protein
D9E17_14005	COG3539	Fimbrial protein
D9E17_14010	COG3539	Fimbrial protein
D9E17_14015	COG3188	usher protein
D9E17_14020	COG3121	Chaperone
D9E17_14025	COG3539	Fimbrial protein
D9E17_14030	COG0431	NADPH-dependent FMN reductase
D9E17_14035	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D9E17_14045	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D9E17_14050	COG1116	anion transmembrane transporter activity
D9E17_14055	COG0308	aminopeptidase N
D9E17_14070	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D9E17_14075	COG1448	Aminotransferase
D9E17_14080	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9E17_14085	COG3108	Peptidase M15
D9E17_14090	COG2989	Protein conserved in bacteria
D9E17_14100	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
D9E17_14110	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D9E17_14115	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D9E17_14120	COG3173	Aminoglycoside phosphotransferase
D9E17_14135	COG3214	Protein conserved in bacteria
D9E17_14145	COG1132	(ABC) transporter
D9E17_14150	COG0658	competence protein
D9E17_14150	COG2333	competence protein COMEC
D9E17_14160	COG0539	negative regulation of cytoplasmic translation
D9E17_14170	COG0501	Belongs to the peptidase M48B family
D9E17_14185	COG2323	membrane
D9E17_14190	COG1944	ATP diphosphatase activity
D9E17_14195	COG2116	formate transmembrane transporter activity
D9E17_14200	COG1882	Formate acetyltransferase
D9E17_14205	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D9E17_14210	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9E17_14215	COG0583	DNA-binding transcription factor activity
D9E17_14220	COG0531	amino acid
D9E17_14230	COG1335	isochorismatase
D9E17_14235	COG3302	dmso reductase anchor subunit
D9E17_14240	COG0437	4 iron, 4 sulfur cluster binding
D9E17_14245	COG0243	molybdopterin cofactor binding
D9E17_14255	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D9E17_14265	COG1674	ftsk spoiiie
D9E17_14265	COG1178	ABC-type Fe3 transport system permease component
D9E17_14270	COG1522	sequence-specific DNA binding
D9E17_14275	COG0492	ferredoxin-NADP+ reductase activity
D9E17_14280	COG4988	ABC transporter
D9E17_14285	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D9E17_14310	COG0542	response to heat
D9E17_14320	COG1278	Cold shock
D9E17_14325	COG0577	efflux transmembrane transporter activity
D9E17_14325	COG1136	(ABC) transporter
D9E17_14330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_14335	COG2990	Protein conserved in bacteria
D9E17_14340	COG3593	DNA synthesis involved in DNA repair
D9E17_14355	COG2431	L-lysine efflux transmembrane transporter activity
D9E17_14365	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9E17_14370	COG0028	Belongs to the TPP enzyme family
D9E17_14375	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
D9E17_14380	COG0702	epimerase
D9E17_14385	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9E17_14390	COG3023	N-Acetylmuramoyl-L-alanine amidase
D9E17_14405	COG1126	abc transporter atp-binding protein
D9E17_14410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_14415	COG4215	(ABC) transporter
D9E17_14420	COG4160	amino acid transport
D9E17_14425	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_14440	COG1177	transmembrane transport
D9E17_14445	COG1176	ABC-type spermidine putrescine transport system, permease component I
D9E17_14450	COG3842	ATPase activity
D9E17_14455	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D9E17_14470	COG0778	Nitroreductase
D9E17_14480	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D9E17_14505	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9E17_14545	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
D9E17_14555	COG3226	Transcriptional regulator
D9E17_14560	COG0738	Major facilitator superfamily
D9E17_14565	COG0561	phosphatase activity
D9E17_14575	COG2814	Major facilitator Superfamily
D9E17_14580	COG0671	phosphoesterase, PA-phosphatase related
D9E17_14585	COG1349	DNA-binding transcription factor activity
D9E17_14590	COG1686	Belongs to the peptidase S11 family
D9E17_14595	COG0625	glutathione transferase activity
D9E17_14615	COG2199	diguanylate cyclase activity
D9E17_14620	COG2200	EAL domain
D9E17_14625	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9E17_14635	COG0747	negative chemotaxis
D9E17_14645	COG1446	asparaginase
D9E17_14650	COG0303	'Molybdopterin
D9E17_14655	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9E17_14660	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D9E17_14665	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D9E17_14675	COG0561	phosphatase activity
D9E17_14685	COG0488	(ABC) transporter
D9E17_14690	COG1376	ErfK ybiS ycfS ynhG family protein
D9E17_14695	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D9E17_14700	COG1321	iron dependent repressor
D9E17_14710	COG2194	sulfuric ester hydrolase activity
D9E17_14715	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D9E17_14725	COG5006	permease, DMT superfamily
D9E17_14735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_14740	COG0765	amino acid transport
D9E17_14745	COG1126	abc transporter atp-binding protein
D9E17_14750	COG0668	transmembrane transport
D9E17_14765	COG4774	siderophore transport
D9E17_14775	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9E17_14785	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D9E17_14790	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D9E17_14795	COG1199	ATP-dependent helicase activity
D9E17_14800	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
D9E17_14805	COG0513	Belongs to the DEAD box helicase family
D9E17_14810	COG1309	transcriptional regulator
D9E17_14820	COG1131	(ABC) transporter
D9E17_14825	COG0842	Transport permease protein
D9E17_14830	COG0842	Transport permease protein
D9E17_14840	COG3568	Endonuclease Exonuclease Phosphatase
D9E17_14845	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9E17_14850	COG0392	lysyltransferase activity
D9E17_14855	COG0670	Belongs to the BI1 family
D9E17_14860	COG0670	Belongs to the BI1 family
D9E17_14865	COG0314	molybdopterin synthase activity
D9E17_14870	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D9E17_14880	COG0521	Mo-molybdopterin cofactor biosynthetic process
D9E17_14890	COG0391	Required for morphogenesis under gluconeogenic growth conditions
D9E17_14900	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D9E17_14905	COG2226	methyltransferase
D9E17_14920	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D9E17_14925	COG1881	PFAM PEBP family protein
D9E17_14930	COG4677	pectinesterase activity
D9E17_14935	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
D9E17_14940	COG0471	metal ion transport
D9E17_14945	COG2828	Protein conserved in bacteria
D9E17_14950	COG0583	DNA-binding transcription factor activity
D9E17_14960	COG0561	phosphatase activity
D9E17_14965	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
D9E17_14970	COG4149	molybdate abc transporter
D9E17_14975	COG0725	ABC transporter, periplasmic molybdate-binding protein
D9E17_14985	COG2005	Transcriptional regulator
D9E17_14985	COG3585	molybdate ion transport
D9E17_14990	COG1119	ATPase activity
D9E17_14995	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D9E17_15000	COG1085	galactose-1-phosphate uridylyltransferase
D9E17_15010	COG2017	converts alpha-aldose to the beta-anomer
D9E17_15020	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D9E17_15030	COG1230	cation diffusion facilitator family transporter
D9E17_15035	COG3201	nicotinamide mononucleotide transporter
D9E17_15080	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
D9E17_15085	COG2885	chlorophyll binding
D9E17_15095	COG3064	Membrane
D9E17_15100	COG0848	biopolymer transport protein
D9E17_15105	COG0811	peptide transport
D9E17_15110	COG0824	Thioesterase
D9E17_15115	COG3790	cyd operon protein YbgE
D9E17_15120	COG4890	Cyd operon protein YbgT
D9E17_15125	COG1294	oxidase, subunit
D9E17_15130	COG1271	oxidase subunit
D9E17_15140	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_15140	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_15140	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_15145	COG2188	Transcriptional regulator
D9E17_15150	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9E17_15160	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9E17_15165	COG0567	Dehydrogenase, E1 component
D9E17_15170	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D9E17_15175	COG1053	succinate dehydrogenase
D9E17_15180	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
D9E17_15185	COG2009	succinate dehydrogenase
D9E17_15195	COG0372	Belongs to the citrate synthase family
D9E17_15200	COG3539	Fimbrial protein
D9E17_15205	COG3188	usher protein
D9E17_15210	COG3121	Chaperone
D9E17_15220	COG3180	Ammonia monooxygenase
D9E17_15235	COG1984	allophanate hydrolase subunit 2
D9E17_15240	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
D9E17_15245	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
D9E17_15250	COG3104	oligopeptide transport
D9E17_15255	COG0415	Belongs to the DNA photolyase family
D9E17_15260	COG3272	Protein of unknown function (DUF1722)
D9E17_15320	COG2205	protein histidine kinase activity
D9E17_15325	COG0745	RESPONSE REGULATOR receiver
D9E17_15340	COG1982	Orn Lys Arg decarboxylase major
D9E17_15345	COG0531	amino acid
D9E17_15365	COG0033	Phosphoglucomutase
D9E17_15370	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
D9E17_15375	COG0596	Alpha beta hydrolase
D9E17_15385	COG0716	FMN binding
D9E17_15395	COG0735	belongs to the Fur family
D9E17_15415	COG2190	(PTS) system
D9E17_15415	COG1263	PTS System
D9E17_15415	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_15425	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D9E17_15430	COG1846	Transcriptional regulator
D9E17_15430	COG1940	carbohydrate kinase activity
D9E17_15435	COG0647	UMP catabolic process
D9E17_15440	COG0367	asparagine synthase
D9E17_15480	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D9E17_15490	COG1702	phosphate starvation-inducible protein PhoH
D9E17_15500	COG4535	Mg2 and Co2 transporter CorC
D9E17_15505	COG0815	Transfers the fatty acyl group on membrane lipoproteins
D9E17_15520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9E17_15525	COG0765	amino acid transport
D9E17_15530	COG0765	amino acid transport
D9E17_15535	COG1126	abc transporter atp-binding protein
D9E17_15545	COG0443	Heat shock 70 kDa protein
D9E17_15550	COG2214	Heat shock protein DnaJ domain protein
D9E17_15560	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D9E17_15565	COG2214	Heat shock protein DnaJ domain protein
D9E17_15575	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D9E17_15580	COG2888	peptidyl-tyrosine sulfation
D9E17_15595	COG1466	dna polymerase III delta subunit
D9E17_15605	COG0406	alpha-ribazole phosphatase activity
D9E17_15610	COG0799	negative regulation of ribosome biogenesis
D9E17_15620	COG0768	penicillin binding
D9E17_15625	COG0772	Belongs to the SEDS family
D9E17_15630	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D9E17_15635	COG1686	Belongs to the peptidase S11 family
D9E17_15650	COG0583	DNA-binding transcription factor activity
D9E17_15660	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9E17_15665	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9E17_15675	COG1278	Cold shock
D9E17_15685	COG3069	C4-dicarboxylate transmembrane transporter activity
D9E17_15690	COG4565	transcriptional regulatory protein
D9E17_15695	COG3290	protein histidine kinase activity
D9E17_15700	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
D9E17_15710	COG2301	Belongs to the HpcH HpaI aldolase family
D9E17_15715	COG3051	citrate lyase alpha subunit
D9E17_15730	COG0471	metal ion transport
D9E17_15735	COG3719	Belongs to the RNase T2 family
D9E17_15740	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D9E17_15745	COG1063	alcohol dehydrogenase
D9E17_15750	COG0589	response to stress
D9E17_15755	COG3634	alkyl hydroperoxide reductase activity
D9E17_15760	COG0450	alkyl hydroperoxide reductase
D9E17_15765	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D9E17_15770	COG0583	DNA-binding transcription factor activity
D9E17_15775	COG3969	phosphoadenosine phosphosulfate
D9E17_15780	COG1475	DNA binding
D9E17_15785	COG0436	Aminotransferase
D9E17_15790	COG0371	Dehydrogenase
D9E17_15795	COG2879	small protein
D9E17_15800	COG1966	Carbon starvation protein
D9E17_15805	COG2050	protein possibly involved in aromatic compounds catabolism
D9E17_15810	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_15815	COG1535	isochorismatase
D9E17_15815	COG3433	isochorismatase activity
D9E17_15820	COG1021	2,3-dihydroxybenzoate-AMP ligase
D9E17_15825	COG1169	isochorismate synthase
D9E17_15830	COG4592	Periplasmic binding protein
D9E17_15840	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9E17_15845	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9E17_15850	COG1120	ATPase activity
D9E17_15855	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
D9E17_15860	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9E17_15860	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
D9E17_15865	COG3251	PFAM MbtH domain protein
D9E17_15870	COG2382	esterase
D9E17_15875	COG4771	TonB-dependent receptor
D9E17_15880	COG2977	Belongs to the P-Pant transferase superfamily
D9E17_15885	COG3385	transposase activity
D9E17_15915	COG2315	Protein conserved in bacteria
D9E17_15920	COG0778	Nitroreductase
D9E17_15925	COG0668	transmembrane transport
D9E17_15930	COG1113	amino acid transport
D9E17_15935	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9E17_15940	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_15945	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_15950	COG1538	Outer membrane efflux protein
D9E17_15955	COG0745	RESPONSE REGULATOR receiver
D9E17_15960	COG5002	protein histidine kinase activity
D9E17_15965	COG3501	Rhs element vgr protein
D9E17_15970	COG1215	transferase activity, transferring glycosyl groups
D9E17_15975	COG4783	chaperone-mediated protein folding
D9E17_15985	COG2207	Transcriptional regulator
D9E17_16010	COG3539	Fimbrial protein
D9E17_16015	COG3539	Fimbrial protein
D9E17_16020	COG3188	usher protein
D9E17_16025	COG3121	Chaperone
D9E17_16030	COG3539	Fimbrial protein
D9E17_16040	COG2501	S4 domain
D9E17_16045	COG1988	membrane-bound metal-dependent
D9E17_16055	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D9E17_16065	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D9E17_16070	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D9E17_16075	COG0549	Belongs to the carbamate kinase family
D9E17_16085	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9E17_16090	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9E17_16095	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D9E17_16100	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9E17_16105	COG3257	ureidoglycine aminohydrolase activity
D9E17_16110	COG1929	Belongs to the glycerate kinase type-1 family
D9E17_16115	COG2233	PERMEase
D9E17_16130	COG1953	Uracil, thiamine, allantoin
D9E17_16135	COG2084	Dehydrogenase
D9E17_16140	COG3622	Belongs to the hyi family
D9E17_16145	COG3960	tartronate-semialdehyde synthase activity
D9E17_16150	COG1414	Transcriptional regulator
D9E17_16155	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
D9E17_16160	COG0583	DNA-binding transcription factor activity
D9E17_16165	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
D9E17_16170	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
D9E17_16175	COG4181	ATPase activity
D9E17_16180	COG2755	lipolytic protein G-D-S-L family
D9E17_16185	COG0300	oxidoreductase activity
D9E17_16190	COG3118	belongs to the thioredoxin family
D9E17_16195	COG0390	transport system, permease component
D9E17_16200	COG4619	ABC transporter
D9E17_16205	COG0330	HflC and HflK could
D9E17_16210	COG1585	Membrane protein implicated in regulation of membrane protease activity
D9E17_16215	COG0789	Transcriptional regulator
D9E17_16220	COG0531	amino acid
D9E17_16230	COG2217	Heavy metal translocating P-type atpase
D9E17_16235	COG3093	addiction module antidote protein HigA
D9E17_16245	COG3735	TraB family
D9E17_16250	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D9E17_16255	COG0737	Belongs to the 5'-nucleotidase family
D9E17_16260	COG2223	nitrite transmembrane transporter activity
D9E17_16265	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D9E17_16265	COG4651	solute:proton antiporter activity
D9E17_16270	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_16295	COG0326	Molecular chaperone. Has ATPase activity
D9E17_16310	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
D9E17_16320	COG2832	Protein of unknown function (DUF454)
D9E17_16325	COG3923	Primosomal replication protein n
D9E17_16335	COG3264	Mechanosensitive ion channel
D9E17_16335	COG1196	nuclear chromosome segregation
D9E17_16340	COG1309	transcriptional regulator
D9E17_16345	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9E17_16350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9E17_16365	COG0110	maltose O-acetyltransferase activity
D9E17_16375	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D9E17_16380	COG5507	3-demethylubiquinone-9 3-methyltransferase
D9E17_16390	COG3695	enzyme binding
D9E17_16395	COG3126	Type III secretion system lipoprotein chaperone (YscW)
D9E17_16400	COG1946	Acyl-CoA thioesterase
D9E17_16405	COG0004	ammonium transporteR
D9E17_16410	COG0347	Belongs to the P(II) protein family
D9E17_16415	COG1132	(ABC) transporter
D9E17_16420	COG1132	(ABC) transporter
D9E17_16425	COG1522	sequence-specific DNA binding
D9E17_16435	COG4533	DNA binding
D9E17_16445	COG0824	Thioesterase
D9E17_16450	COG1555	photosystem II stabilization
D9E17_16455	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9E17_16460	COG0776	regulation of translation
D9E17_16465	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D9E17_16485	COG0271	Belongs to the BolA IbaG family
D9E17_16490	COG3056	Lipoprotein
D9E17_16495	COG2223	nitrite transmembrane transporter activity
D9E17_16500	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D9E17_16505	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D9E17_16510	COG1845	cytochrome c oxidase, subunit III
D9E17_16515	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D9E17_16525	COG2814	Major facilitator Superfamily
D9E17_16535	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D9E17_16540	COG0693	protein deglycase activity
D9E17_16555	COG0142	geranyltranstransferase activity
D9E17_16565	COG0667	Aldo Keto reductase
D9E17_16570	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D9E17_16575	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
D9E17_16590	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D9E17_16590	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D9E17_16600	COG4238	major outer membrane lipoprotein
D9E17_16605	COG3248	Nucleoside-binding outer membrane protein
D9E17_16610	COG1403	HNH endonuclease
D9E17_16615	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D9E17_16620	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D9E17_16625	COG1862	Preprotein translocase
D9E17_16645	COG0366	Alpha amylase catalytic
D9E17_16650	COG1113	amino acid transport
D9E17_16655	COG1114	Component of the transport system for branched-chain amino acids
D9E17_16660	COG5002	protein histidine kinase activity
D9E17_16665	COG0745	RESPONSE REGULATOR receiver
D9E17_16670	COG0420	3'-5' exonuclease activity
D9E17_16675	COG0419	ATPase involved in DNA repair
D9E17_16680	COG2814	Major facilitator Superfamily
D9E17_16685	COG1940	carbohydrate kinase activity
D9E17_16710	COG4126	flavin adenine dinucleotide binding
D9E17_16730	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9E17_16735	COG3706	GGDEF domain
D9E17_16745	COG1785	Belongs to the alkaline phosphatase family
D9E17_16755	COG1181	Belongs to the D-alanine--D-alanine ligase family
D9E17_16775	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
D9E17_16780	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9E17_16785	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D9E17_16790	COG3468	outer membrane autotransporter barrel domain protein
D9E17_16795	COG0113	porphobilinogen synthase activity
D9E17_16800	COG2175	clavaminate synthase activity
D9E17_16805	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D9E17_16810	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
D9E17_16815	COG4521	taurine ABC transporter
D9E17_16820	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9E17_16825	COG1215	transferase activity, transferring glycosyl groups
D9E17_16855	COG3122	Protein conserved in bacteria
D9E17_16860	COG2814	Major facilitator Superfamily
D9E17_16875	COG3971	2-oxopent-4-enoate hydratase activity
D9E17_16885	COG3384	dioxygenase
D9E17_16895	COG1414	Transcriptional regulator
D9E17_16900	COG1609	Transcriptional regulator
D9E17_16905	COG3250	beta-galactosidase activity
D9E17_16910	COG2223	nitrite transmembrane transporter activity
D9E17_16915	COG0110	maltose O-acetyltransferase activity
D9E17_16920	COG2807	transmembrane transport
D9E17_16930	COG0288	reversible hydration of carbon dioxide
D9E17_16935	COG0583	DNA-binding transcription factor activity
D9E17_16940	COG0402	S-adenosylhomocysteine deaminase activity
D9E17_16945	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D9E17_16950	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9E17_16955	COG2079	MmgE PrpD family protein
D9E17_16960	COG0372	Belongs to the citrate synthase family
D9E17_16965	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
D9E17_16970	COG3829	transcription factor binding
D9E17_16980	COG1280	lysine exporter protein (LysE YggA)
D9E17_16995	COG1064	alcohol dehydrogenase
D9E17_17000	COG0402	S-adenosylhomocysteine deaminase activity
D9E17_17005	COG0549	Belongs to the carbamate kinase family
D9E17_17015	COG1304	FMN binding
D9E17_17020	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9E17_17030	COG0666	response to abiotic stimulus
D9E17_17040	COG0583	DNA-binding transcription factor activity
D9E17_17045	COG2200	EAL domain
D9E17_17045	COG2771	luxR family
D9E17_17050	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D9E17_17075	COG1556	Lactate utilization protein
D9E17_17080	COG1139	Iron-sulfur cluster binding protein
D9E17_17085	COG0247	lactate metabolic process
D9E17_17090	COG2207	Transcriptional regulator
D9E17_17095	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9E17_17105	COG3059	membrane
D9E17_17115	COG3708	Transcriptional regulator
D9E17_17115	COG2207	Transcriptional regulator
D9E17_17120	COG1388	LysM domain
D9E17_17135	COG0254	rRNA binding
D9E17_17165	COG3188	usher protein
D9E17_17175	COG3121	Chaperone
D9E17_17185	COG3477	response to acidic pH
D9E17_17190	COG2080	2 iron, 2 sulfur cluster binding
D9E17_17195	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
D9E17_17200	COG1529	Aldehyde oxidase and xanthine dehydrogenase
D9E17_17205	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
D9E17_17210	COG0583	DNA-binding transcription factor activity
D9E17_17220	COG2207	Transcriptional regulator
D9E17_17245	COG3772	lysozyme
D9E17_17380	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D9E17_17400	COG2195	Cleaves the N-terminal amino acid of tripeptides
D9E17_17405	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
D9E17_17410	COG1690	Belongs to the RtcB family
D9E17_17415	COG0454	-acetyltransferase
D9E17_17425	COG2161	toxin-antitoxin pair type II binding
D9E17_17440	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D9E17_17445	COG1191	sigma factor activity
D9E17_17470	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
D9E17_17480	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9E17_17495	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9E17_17520	COG4786	Flagellar basal body rod
D9E17_17525	COG4787	bacterial-type flagellum-dependent cell motility
D9E17_17530	COG1749	Flagellar hook protein flgE
D9E17_17540	COG1558	bacterial-type flagellum-dependent cell motility
D9E17_17545	COG1815	bacterial-type flagellum-dependent cell motility
D9E17_17575	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
D9E17_17595	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9E17_17605	COG1677	Flagellar hook-basal body complex protein FliE
D9E17_17610	COG2204	response regulator
D9E17_17630	COG1987	bacterial-type flagellum assembly
D9E17_17650	COG1943	Transposase
D9E17_17655	COG0791	NLP P60 protein
D9E17_17660	COG3034	peptidoglycan biosynthetic process
D9E17_17665	COG0121	glutamine amidotransferase
D9E17_17675	COG1960	acyl-CoA dehydrogenase activity
D9E17_17685	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9E17_17690	COG5433	transposase activity
D9E17_17720	COG3157	Type VI secretion system effector, Hcp
D9E17_17725	COG4104	PAAR repeat-containing protein
D9E17_17745	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D9E17_17755	COG2226	methyltransferase
D9E17_17760	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9E17_17765	COG0741	lytic transglycosylase activity
D9E17_17765	COG1388	LysM domain
D9E17_17770	COG2226	methyltransferase
D9E17_17780	COG0583	DNA-binding transcription factor activity
D9E17_17785	COG0656	L-ascorbic acid biosynthetic process
D9E17_17820	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D9E17_17825	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D9E17_17830	COG2011	ABC-type metal ion transport system permease component
D9E17_17835	COG1464	Belongs to the NlpA lipoprotein family
D9E17_17845	COG1720	tRNA m6t6A37 methyltransferase activity
D9E17_17855	COG0791	NLP P60 protein
D9E17_17860	COG3015	lipoprotein NlpE involved in copper resistance
D9E17_17865	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
D9E17_17870	COG4681	YaeQ
D9E17_17880	COG4568	rho-dependent transcription termination
D9E17_17890	COG0346	lactoylglutathione lyase activity
D9E17_17905	COG0587	DNA-directed DNA polymerase activity
D9E17_17930	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
D9E17_17935	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
D9E17_17945	COG0750	zinc metalloprotease
D9E17_17950	COG0575	Belongs to the CDS family
D9E17_17955	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
D9E17_17960	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
D9E17_17985	COG0024	Methionine aminopeptidase
D9E17_18000	COG1408	metallophosphoesterase
D9E17_18015	COG3835	regulator
D9E17_18020	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9E17_18035	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9E17_18040	COG2860	membrane
D9E17_18065	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9E17_18070	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9E17_18075	COG1120	ATPase activity
D9E17_18080	COG4774	siderophore transport
D9E17_18085	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9E17_18090	COG1643	Atp-dependent helicase
D9E17_18095	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D9E17_18105	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9E17_18115	COG0617	tRNA 3'-terminal CCA addition
D9E17_18120	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D9E17_18130	COG3121	Chaperone
D9E17_18135	COG3188	usher protein
D9E17_18140	COG3539	Fimbrial protein
D9E17_18145	COG3539	Fimbrial protein
D9E17_18170	COG5464	transposase or invertase
D9E17_18180	COG0726	polysaccharide deacetylase
D9E17_18185	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_18190	COG0842	Transport permease protein
D9E17_18195	COG1131	(ABC) transporter
D9E17_18200	COG0288	reversible hydration of carbon dioxide
D9E17_18205	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
D9E17_18210	COG4993	Dehydrogenase
D9E17_18215	COG2132	Multicopper oxidase
D9E17_18240	COG1049	propionate catabolic process, 2-methylcitrate cycle
D9E17_18245	COG3064	Membrane
D9E17_18250	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9E17_18255	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9E17_18260	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
D9E17_18265	COG2186	Transcriptional regulator
D9E17_18275	COG3725	Membrane protein required for beta-lactamase induction
D9E17_18280	COG3023	N-Acetylmuramoyl-L-alanine amidase
D9E17_18285	COG0157	Belongs to the NadC ModD family
D9E17_18290	COG4969	Belongs to the N-Me-Phe pilin family
D9E17_18295	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D9E17_18300	COG1459	type II secretion system
D9E17_18310	COG0237	dephospho-CoA kinase activity
D9E17_18325	COG0494	nUDIX hydrolase
D9E17_18345	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D9E17_18350	COG0849	cell division
D9E17_18355	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
D9E17_18360	COG1181	Belongs to the D-alanine--D-alanine ligase family
D9E17_18375	COG0772	Belongs to the SEDS family
D9E17_18380	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
D9E17_18390	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D9E17_18395	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D9E17_18400	COG0768	penicillin binding
D9E17_18405	COG3116	cell division
D9E17_18420	COG1609	Transcriptional regulator
D9E17_18430	COG0440	acetolactate synthase activity
D9E17_18435	COG0028	Belongs to the TPP enzyme family
D9E17_18445	COG0583	DNA-binding transcription factor activity
D9E17_18460	COG0473	3-isopropylmalate dehydrogenase activity
D9E17_18475	COG2814	Major facilitator Superfamily
D9E17_18485	COG4533	DNA binding
D9E17_18490	COG4143	(ABC) transporter
D9E17_18495	COG1178	ABC-type Fe3 transport system permease component
D9E17_18505	COG0586	Pfam SNARE associated Golgi protein
D9E17_18510	COG4977	sequence-specific DNA binding
D9E17_18525	COG0235	Class ii aldolase
D9E17_18530	COG0417	DNA replication proofreading
D9E17_18540	COG0564	pseudouridine synthase activity
D9E17_18545	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
D9E17_18550	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D9E17_18555	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9E17_18580	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
D9E17_18595	COG2271	Major facilitator Superfamily
D9E17_18600	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
D9E17_18605	COG0644	oxidoreductase
D9E17_18640	COG0318	PFAM AMP-dependent synthetase and ligase
D9E17_18660	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
D9E17_18665	COG0505	Belongs to the CarA family
D9E17_18685	COG1047	Peptidyl-prolyl cis-trans
D9E17_18700	COG0196	riboflavin kinase activity
D9E17_18730	COG0583	DNA-binding transcription factor activity
D9E17_18750	COG3385	transposase activity
D9E17_18770	COG4735	regulation of single-species biofilm formation
D9E17_18775	COG1584	GPR1 FUN34 yaaH family protein
D9E17_18780	COG0521	Mo-molybdopterin cofactor biosynthetic process
D9E17_18790	COG1115	amino acid carrier protein
D9E17_18795	COG3022	response to hydroperoxide
D9E17_18805	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D9E17_18815	COG0527	aspartate kinase activity
D9E17_18815	COG0460	homoserine dehydrogenase
D9E17_18825	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
D9E17_18835	COG0745	RESPONSE REGULATOR receiver
D9E17_18845	COG2205	protein histidine kinase activity
D9E17_18850	COG0745	RESPONSE REGULATOR receiver
D9E17_18855	COG3045	CreA protein
D9E17_18860	COG3708	Transcriptional regulator
D9E17_18860	COG2207	Transcriptional regulator
D9E17_18880	COG0741	lytic transglycosylase activity
D9E17_18885	COG0488	(ABC) transporter
D9E17_18890	COG3172	ATPase kinase involved in NAD metabolism
D9E17_18890	COG1056	cytidyltransferase-related domain
D9E17_18895	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D9E17_18900	COG0560	Phosphoserine phosphatase
D9E17_18940	COG1328	CTP reductase activity
D9E17_18945	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D9E17_18950	COG0084	hydrolase, TatD family'
D9E17_18955	COG4667	esterase of the alpha-beta hydrolase superfamily
D9E17_18965	COG2823	Periplasmic or secreted lipoprotein
D9E17_18995	COG4220	transposase activity
D9E17_19015	COG3772	lysozyme
D9E17_19035	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
D9E17_19060	COG1011	Hydrolase
D9E17_19065	COG0456	acetyltransferase
D9E17_19070	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
D9E17_19100	COG4114	ferric iron reductase
D9E17_19105	COG2197	response regulator
D9E17_19110	COG2197	response regulator
D9E17_19115	COG2966	Psort location CytoplasmicMembrane, score
D9E17_19130	COG1484	DNA-dependent DNA replication
D9E17_19140	COG1368	sulfuric ester hydrolase activity
D9E17_19145	COG1063	alcohol dehydrogenase
D9E17_19150	COG1802	Transcriptional regulator
D9E17_19155	COG2271	Major facilitator Superfamily
D9E17_19160	COG0840	transmembrane signaling receptor activity
D9E17_19165	COG1846	Transcriptional regulator
D9E17_19170	COG0179	Fumarylacetoacetate (FAA) hydrolase
D9E17_19175	COG1012	belongs to the aldehyde dehydrogenase family
D9E17_19180	COG3384	dioxygenase
D9E17_19190	COG3971	2-oxopent-4-enoate hydratase activity
D9E17_19210	COG2368	4-hydroxyphenylacetate
D9E17_19215	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D9E17_19220	COG1966	Carbon starvation protein
D9E17_19225	COG2879	small protein
D9E17_19230	COG0523	cobalamin synthesis protein
D9E17_19250	COG0477	Major facilitator Superfamily
D9E17_19260	COG3366	ferrous iron transmembrane transporter activity
D9E17_19265	COG0700	Nucleoside recognition
D9E17_19270	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D9E17_19275	COG0583	DNA-binding transcription factor activity
D9E17_19295	COG2186	Transcriptional regulator
D9E17_19300	COG0246	Mannitol dehydrogenase
D9E17_19310	COG2610	gluconate transmembrane transporter activity
D9E17_19315	COG3539	Fimbrial protein
D9E17_19350	COG1595	DNA-templated transcription, initiation
D9E17_19355	COG3712	iron ion homeostasis
D9E17_19360	COG4772	TonB-dependent receptor
D9E17_19365	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
D9E17_19370	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9E17_19375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9E17_19380	COG1120	ATPase activity
D9E17_19385	COG2085	NADP oxidoreductase coenzyme F420-dependent
D9E17_19395	COG2963	transposase activity
D9E17_19415	COG1064	alcohol dehydrogenase
D9E17_19420	COG0433	COG0433 Predicted ATPase
D9E17_19425	COG0795	lipopolysaccharide-transporting ATPase activity
D9E17_19430	COG0795	lipopolysaccharide-transporting ATPase activity
D9E17_19440	COG2927	DNA polymerase III (CHI subunit)
D9E17_19445	COG0525	valine-tRNA ligase activity
D9E17_19450	COG4269	membrane
D9E17_19455	COG0456	acetyltransferase
D9E17_19460	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
D9E17_19480	COG2731	YhcH YjgK YiaL family protein
D9E17_19485	COG1309	transcriptional regulator
D9E17_19490	COG1028	Short-chain dehydrogenase reductase Sdr
D9E17_19495	COG0251	oxidation-reduction process
D9E17_19515	COG0251	oxidation-reduction process
D9E17_19520	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
D9E17_19530	COG1609	Transcriptional regulator
D9E17_19535	COG1263	PTS System
D9E17_19535	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_19540	COG0366	Alpha amylase catalytic
D9E17_19545	COG1328	CTP reductase activity
D9E17_19550	COG0602	queuosine metabolic process
D9E17_19555	COG3783	Cytochrome b(562)
D9E17_19560	COG0312	modulator of DNA gyrase
D9E17_19570	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
D9E17_19580	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9E17_19585	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9E17_19590	COG1129	ABC transporter
D9E17_19595	COG1879	ABC-type sugar transport system periplasmic component
D9E17_19600	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
D9E17_19605	COG2105	PFAM AIG2 family protein
D9E17_19610	COG2911	Protein conserved in bacteria
D9E17_19615	COG0729	surface antigen
D9E17_19625	COG1253	flavin adenine dinucleotide binding
D9E17_19635	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
D9E17_19640	COG1218	3'(2'),5'-bisphosphate nucleotidase
D9E17_19645	COG0737	Belongs to the 5'-nucleotidase family
D9E17_19650	COG1733	regulation of RNA biosynthetic process
D9E17_19655	COG0702	epimerase
D9E17_19660	COG0697	spore germination
D9E17_19670	COG1113	amino acid transport
D9E17_19675	COG0545	Peptidyl-prolyl cis-trans isomerase
D9E17_19685	COG3061	Opacity-associated protein A
D9E17_19690	COG1309	transcriptional regulator
D9E17_19705	COG1024	Enoyl-CoA hydratase
D9E17_19710	COG4670	ketone body catabolic process
D9E17_19715	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D9E17_19720	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
D9E17_19730	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
D9E17_19780	COG3414	Phosphotransferase system galactitol-specific IIB component
D9E17_19785	COG3037	sugar-specific permease SgaT UlaA
D9E17_19800	COG1073	alpha beta
D9E17_19805	COG3650	response to hydrogen peroxide
D9E17_19815	COG1960	acyl-CoA dehydrogenase activity
D9E17_19820	COG0754	glutathionylspermidine amidase activity
D9E17_19825	COG5463	Belongs to the UPF0441 family
D9E17_19830	COG3766	membrane
D9E17_19840	COG1842	Phage shock protein A
D9E17_19845	COG3789	protein conserved in bacteria
D9E17_19850	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9E17_19855	COG0557	exoribonuclease II activity
D9E17_19870	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
D9E17_19875	COG0330	HflC and HflK could
D9E17_19880	COG0330	HflC and HflK could
D9E17_19885	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D9E17_19905	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9E17_19910	COG0802	atpase or kinase
D9E17_19915	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
D9E17_19915	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
D9E17_19920	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D9E17_19960	COG3264	Mechanosensitive ion channel
D9E17_19960	COG1511	domain protein
D9E17_19975	COG0531	amino acid
D9E17_19985	COG1053	succinate dehydrogenase
D9E17_19990	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D9E17_20005	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9E17_20010	COG3040	lipid binding
D9E17_20015	COG2076	Multidrug Resistance protein
D9E17_20020	COG5510	response to toxic substance
D9E17_20025	COG5510	response to toxic substance
D9E17_20035	COG1509	lysine 2,3-aminomutase activity
D9E17_20060	COG0531	amino acid
D9E17_20065	COG3030	protein affecting phage T7 exclusion by the F plasmid
D9E17_20070	COG1027	Aspartate ammonia-lyase
D9E17_20075	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D9E17_20085	COG4232	protein-disulfide reductase activity
D9E17_20090	COG1309	transcriptional regulator
D9E17_20100	COG3710	Transcriptional regulator
D9E17_20105	COG0531	amino acid
D9E17_20110	COG1982	Orn Lys Arg decarboxylase major
D9E17_20115	COG3104	oligopeptide transport
D9E17_20120	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
D9E17_20135	COG2388	GCN5-related N-acetyl-transferase
D9E17_20140	COG3592	Divergent 4Fe-4S mono-cluster
D9E17_20145	COG3290	protein histidine kinase activity
D9E17_20150	COG4565	transcriptional regulatory protein
D9E17_20155	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D9E17_20160	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
D9E17_20160	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
D9E17_20165	COG3647	Membrane
D9E17_20175	COG1486	melibiose metabolic process
D9E17_20180	COG2169	Transcriptional regulator
D9E17_20185	COG1982	Orn Lys Arg decarboxylase major
D9E17_20190	COG2207	Transcriptional regulator
D9E17_20200	COG0531	amino acid
D9E17_20205	COG2194	sulfuric ester hydrolase activity
D9E17_20210	COG0745	RESPONSE REGULATOR receiver
D9E17_20215	COG0642	Histidine kinase
D9E17_20225	COG0477	Major facilitator Superfamily
D9E17_20240	COG2824	Alkylphosphonate utilization operon protein PhnA
D9E17_20245	COG2764	glyoxalase bleomycin resistance protein dioxygenase
D9E17_20255	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
D9E17_20260	COG3639	organic phosphonate transmembrane transporter activity
D9E17_20265	COG2188	Transcriptional regulator
D9E17_20270	COG3624	Phosphonate C-P lyase system protein PhnG
D9E17_20275	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
D9E17_20280	COG3626	phosphonate metabolism
D9E17_20285	COG3627	carbon phosphorus lyase activity
D9E17_20290	COG4107	phosphonate C-P lyase system protein PhnK
D9E17_20295	COG4778	phosphonate C-P lyase system protein PhnL
D9E17_20300	COG3454	Phosphonate metabolism
D9E17_20305	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
D9E17_20310	COG0456	acetyltransferase
D9E17_20315	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
D9E17_20325	COG0698	ribose 5-phosphate isomerase
D9E17_20330	COG1737	Transcriptional regulator
D9E17_20335	COG1879	ABC-type sugar transport system periplasmic component
D9E17_20340	COG1129	ABC transporter
D9E17_20345	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9E17_20350	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D9E17_20355	COG1940	carbohydrate kinase activity
D9E17_20360	COG2015	COG2015, Alkyl sulfatase and related hydrolases
D9E17_20370	COG1566	PFAM secretion protein HlyD family protein
D9E17_20375	COG1289	transmembrane transporter activity
D9E17_20380	COG1538	Outer membrane efflux protein
D9E17_20390	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D9E17_20395	COG1301	dicarboxylic acid transport
D9E17_20400	COG4235	cytochrome complex assembly
D9E17_20405	COG3088	subunit of a heme lyase
D9E17_20410	COG1138	Cytochrome C-type biogenesis protein
D9E17_20415	COG3301	Polysulphide reductase, NrfD
D9E17_20420	COG0437	4 iron, 4 sulfur cluster binding
D9E17_20425	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
D9E17_20435	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9E17_20440	COG3162	membrane
D9E17_20450	COG1357	PFAM Pentapeptide repeats (8 copies)
D9E17_20455	COG0025	NhaP-type Na H and K H
D9E17_20460	COG2252	PERMEase
D9E17_20465	COG0789	Transcriptional regulator
D9E17_20470	COG2207	Transcriptional regulator
D9E17_20475	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D9E17_20485	COG0629	single-stranded DNA binding
D9E17_20490	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
D9E17_20495	COG2315	Protein conserved in bacteria
D9E17_20505	COG3700	Belongs to the class B bacterial acid phosphatase family
D9E17_20515	COG1448	Aminotransferase
D9E17_20520	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D9E17_20525	COG0305	Participates in initiation and elongation during chromosome replication
D9E17_20530	COG0604	alcohol dehydrogenase
D9E17_20540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D9E17_20555	COG0735	belongs to the Fur family
D9E17_20560	COG3237	CsbD-like
D9E17_20565	COG0534	Mate efflux family protein
D9E17_20575	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D9E17_20610	COG3842	ATPase activity
D9E17_20615	COG2182	Extracellular solute-binding protein
D9E17_20620	COG1175	transmembrane transport
D9E17_20625	COG3833	ABC-type maltose transport systems, permease component
D9E17_20630	COG0477	Major facilitator Superfamily
D9E17_20630	COG2814	Major facilitator Superfamily
D9E17_20645	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D9E17_20670	COG0527	aspartate kinase activity
D9E17_20680	COG1187	pseudouridine synthase activity
D9E17_20690	COG1283	sodium-dependent phosphate transmembrane transporter activity
D9E17_20695	COG1410	methionine synthase
D9E17_20695	COG0646	methionine synthase
D9E17_20700	COG1414	Transcriptional regulator
D9E17_20715	COG2224	Isocitrate lyase
D9E17_20720	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
D9E17_20730	COG0456	acetyltransferase
D9E17_20765	COG0151	Belongs to the GarS family
D9E17_20770	COG2204	response regulator
D9E17_20775	COG4191	Histidine kinase
D9E17_20780	COG3678	ATP-independent chaperone mediated protein folding
D9E17_20790	COG0776	regulation of translation
D9E17_20795	COG3068	Protein conserved in bacteria
D9E17_20830	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9E17_20835	COG2104	thiamine diphosphate biosynthetic process
D9E17_20845	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
D9E17_20885	COG0250	Participates in transcription elongation, termination and antitermination
D9E17_20890	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D9E17_20925	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
D9E17_20925	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
D9E17_20960	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
D9E17_20965	COG4206	TonB-dependent receptor
D9E17_20980	COG1309	transcriptional regulator
D9E17_20990	COG0583	DNA-binding transcription factor activity
D9E17_21000	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
D9E17_21005	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D9E17_21020	COG2194	sulfuric ester hydrolase activity
D9E17_21025	COG2207	Transcriptional regulator
D9E17_21030	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_21035	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D9E17_21045	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_21050	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_21055	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_21055	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_21055	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9E17_21060	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D9E17_21065	COG0371	Dehydrogenase
D9E17_21075	COG0697	spore germination
D9E17_21080	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
D9E17_21085	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
D9E17_21090	COG0460	homoserine dehydrogenase
D9E17_21090	COG0527	aspartate kinase activity
D9E17_21095	COG0626	cystathionine gamma-synthase activity
D9E17_21105	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
D9E17_21120	COG3209	COG3209 Rhs family protein
D9E17_21120	COG3209	COG3209 Rhs family protein
D9E17_21130	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D9E17_21135	COG1609	Transcriptional regulator
D9E17_21140	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D9E17_21150	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
D9E17_21155	COG1575	Belongs to the MenA family. Type 1 subfamily
D9E17_21170	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D9E17_21180	COG1494	fructose-1,6-bisphosphatase
D9E17_21185	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9E17_21190	COG0589	response to stress
D9E17_21195	COG3691	Protein conserved in bacteria
D9E17_21200	COG3152	Membrane
D9E17_21220	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
D9E17_21235	COG3678	ATP-independent chaperone mediated protein folding
D9E17_21240	COG0745	RESPONSE REGULATOR receiver
D9E17_21245	COG2205	protein histidine kinase activity
D9E17_21250	COG2258	MOSC domain
D9E17_21260	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D9E17_21305	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_21310	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_21310	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9E17_21315	COG1363	Peptidase, m42
D9E17_21320	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9E17_21320	COG3711	transcriptional antiterminator
D9E17_21340	COG0437	4 iron, 4 sulfur cluster binding
D9E17_21345	COG2864	formate dehydrogenase
D9E17_21355	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
D9E17_21360	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
D9E17_21365	COG0456	acetyltransferase
D9E17_21380	COG1011	Hydrolase
D9E17_21385	COG1349	DNA-binding transcription factor activity
D9E17_21390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_21395	COG2084	Dehydrogenase
D9E17_21400	COG3684	Belongs to the aldolase LacD family
D9E17_21405	COG2942	2-epimerase
D9E17_21410	COG2017	converts alpha-aldose to the beta-anomer
D9E17_21415	COG1501	Belongs to the glycosyl hydrolase 31 family
D9E17_21420	COG2211	Major facilitator Superfamily
D9E17_21425	COG2211	Major facilitator Superfamily
D9E17_21430	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D9E17_21435	COG2271	Major facilitator Superfamily
D9E17_21440	COG1082	Xylose isomerase domain protein TIM barrel
D9E17_21445	COG2188	Transcriptional regulator
D9E17_21455	COG0174	glutamine synthetase
D9E17_21460	COG3852	Histidine kinase
D9E17_21465	COG2204	response regulator
D9E17_21475	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D9E17_21490	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9E17_21490	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9E17_21500	COG0204	Acyl-transferase
D9E17_21505	COG5339	Protein conserved in bacteria
D9E17_21510	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D9E17_21515	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9E17_21520	COG3084	Protein conserved in bacteria
D9E17_21525	COG0746	molybdenum cofactor guanylyltransferase activity
D9E17_21530	COG1763	Mo-molybdopterin cofactor biosynthetic process
D9E17_21560	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
D9E17_21565	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D9E17_21570	COG1739	Uncharacterized protein family UPF0029
D9E17_21585	COG0183	Belongs to the thiolase family
D9E17_21590	COG0543	2 iron, 2 sulfur cluster binding
D9E17_21595	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D9E17_21600	COG0250	Participates in transcription elongation, termination and antitermination
D9E17_21605	COG0084	hydrolase, TatD family'
D9E17_21610	COG0805	protein transport
D9E17_21615	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9E17_21620	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9E17_21630	COG3165	ubiquinone biosynthetic process from chorismate
D9E17_21640	COG1322	Protein conserved in bacteria
D9E17_21645	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
D9E17_21650	COG0412	Dienelactone hydrolase
D9E17_21660	COG0583	DNA-binding transcription factor activity
D9E17_21670	COG0561	phosphatase activity
D9E17_21675	COG2267	carboxylic ester hydrolase activity
D9E17_21680	COG1280	lysine exporter protein (LysE YggA)
D9E17_21685	COG1280	lysine exporter protein (LysE YggA)
D9E17_21690	COG0514	ATP-dependent DNA helicase (RecQ)
D9E17_21695	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
D9E17_21700	COG2050	protein possibly involved in aromatic compounds catabolism
D9E17_21705	COG2962	Rard protein
D9E17_21720	COG0598	Magnesium transport protein CorA
D9E17_21725	COG3698	Phosphodiester glycosidase
D9E17_21730	COG0210	DNA helicase
D9E17_21735	COG1011	Hydrolase
D9E17_21745	COG3159	Protein conserved in bacteria
D9E17_21755	COG5567	small periplasmic lipoprotein
D9E17_21770	COG3072	Adenylate cyclase
D9E17_21780	COG1587	Uroporphyrinogen-III synthase
D9E17_21785	COG2959	enzyme of heme biosynthesis
D9E17_21790	COG3071	HemY protein
D9E17_21795	COG0641	radical SAM
D9E17_21820	COG1113	amino acid transport
D9E17_21840	COG2244	polysaccharide biosynthetic process
D9E17_21845	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D9E17_21850	COG0456	acetyltransferase
D9E17_21855	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
D9E17_21860	COG1088	dTDP-glucose 4,6-dehydratase activity
D9E17_21865	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
D9E17_21870	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
D9E17_21875	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
D9E17_21880	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D9E17_21885	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D9E17_21895	COG3118	belongs to the thioredoxin family
D9E17_21910	COG0210	DNA helicase
D9E17_21920	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9E17_21930	COG0583	DNA-binding transcription factor activity
D9E17_21935	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D9E17_21945	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9E17_21950	COG3978	acetolactate synthase activity
D9E17_21970	COG0606	chelatase, subunit chli
D9E17_21975	COG3085	chromosome segregation
D9E17_22015	COG2186	Transcriptional regulator
D9E17_22020	COG0477	Major facilitator Superfamily
D9E17_22025	COG1609	Transcriptional regulator
D9E17_22030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9E17_22035	COG1879	ABC-type sugar transport system periplasmic component
D9E17_22040	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9E17_22065	COG2425	protein containing a von Willebrand factor type A (vWA) domain
D9E17_22075	COG1522	sequence-specific DNA binding
D9E17_22080	COG0716	FMN binding
D9E17_22095	COG3312	ion transport
D9E17_22155	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D9E17_22160	COG0573	inorganic phosphate transmembrane transporter activity
D9E17_22165	COG0581	inorganic phosphate transmembrane transporter activity
D9E17_22170	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D9E17_22175	COG0704	Plays a role in the regulation of phosphate uptake
D9E17_22195	COG2190	(PTS) system
D9E17_22195	COG1263	PTS System
D9E17_22195	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9E17_22200	COG2723	6-phospho-beta-galactosidase activity
D9E17_22210	COG2382	esterase
D9E17_22215	COG0363	glucosamine-6-phosphate deaminase activity
D9E17_22230	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9E17_22235	COG2252	PERMEase
D9E17_22240	COG0431	NADPH-dependent FMN reductase
D9E17_22245	COG2091	lysine biosynthetic process via aminoadipic acid
D9E17_22260	COG0814	amino acid
D9E17_22330	COG3316	Transposase and inactivated derivatives
D9E17_22345	COG3300	MHYT domain
D9E17_22345	COG5001	Diguanylate cyclase
D9E17_22410	COG0697	spore germination
D9E17_22430	COG4644	lycopene metabolic process
D9E17_22475	COG1196	nuclear chromosome segregation
D9E17_22485	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
D9E17_22500	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
D9E17_22555	COG1475	DNA binding
D9E17_22650	COG4571	Outer membrane protease
D9E17_22720	COG1121	(ABC) transporter
D9E17_22725	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9E17_22730	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9E17_22775	COG1192	Involved in chromosome partitioning
D9E17_22780	COG1475	DNA binding
D9E17_22880	COG2382	esterase
D9E17_22885	COG2819	hydrolase of the alpha beta superfamily
D9E17_23005	COG3316	Transposase and inactivated derivatives
D9E17_23045	COG3316	Transposase and inactivated derivatives
D9E17_23055	COG4221	oxidoreductase activity
D9E17_23105	COG1357	PFAM Pentapeptide repeats (8 copies)