locus-tag	class	description
CEJ55_00010	COG2994	toxin metabolic process
CEJ55_00015	COG2831	hemolysin activation secretion protein
CEJ55_00100	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_00125	COG2003	Belongs to the UPF0758 family
CEJ55_00160	COG2200	EAL domain
CEJ55_00160	COG2771	luxR family
CEJ55_00175	COG3710	Transcriptional regulator
CEJ55_00180	COG0531	amino acid
CEJ55_00185	COG1982	Orn Lys Arg decarboxylase major
CEJ55_00190	COG3104	oligopeptide transport
CEJ55_00195	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CEJ55_00215	COG2388	GCN5-related N-acetyl-transferase
CEJ55_00220	COG3592	Divergent 4Fe-4S mono-cluster
CEJ55_00225	COG3290	protein histidine kinase activity
CEJ55_00230	COG4565	transcriptional regulatory protein
CEJ55_00240	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CEJ55_00245	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CEJ55_00245	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CEJ55_00250	COG3647	Membrane
CEJ55_00255	COG2211	Major facilitator Superfamily
CEJ55_00260	COG1486	melibiose metabolic process
CEJ55_00270	COG2169	Transcriptional regulator
CEJ55_00275	COG1982	Orn Lys Arg decarboxylase major
CEJ55_00280	COG2207	Transcriptional regulator
CEJ55_00285	COG0531	amino acid
CEJ55_00290	COG2194	sulfuric ester hydrolase activity
CEJ55_00295	COG0745	RESPONSE REGULATOR receiver
CEJ55_00300	COG0642	Histidine kinase
CEJ55_00310	COG0477	Major facilitator Superfamily
CEJ55_00320	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CEJ55_00330	COG2824	Alkylphosphonate utilization operon protein PhnA
CEJ55_00335	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CEJ55_00345	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
CEJ55_00350	COG3639	organic phosphonate transmembrane transporter activity
CEJ55_00355	COG2188	Transcriptional regulator
CEJ55_00360	COG3624	Phosphonate C-P lyase system protein PhnG
CEJ55_00365	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
CEJ55_00370	COG3626	phosphonate metabolism
CEJ55_00375	COG3627	carbon phosphorus lyase activity
CEJ55_00380	COG4107	phosphonate C-P lyase system protein PhnK
CEJ55_00385	COG4778	phosphonate C-P lyase system protein PhnL
CEJ55_00390	COG3454	Phosphonate metabolism
CEJ55_00395	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
CEJ55_00400	COG0456	acetyltransferase
CEJ55_00405	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CEJ55_00415	COG0698	ribose 5-phosphate isomerase
CEJ55_00420	COG2015	COG2015, Alkyl sulfatase and related hydrolases
CEJ55_00430	COG1566	PFAM secretion protein HlyD family protein
CEJ55_00435	COG1289	transmembrane transporter activity
CEJ55_00450	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEJ55_00455	COG1301	dicarboxylic acid transport
CEJ55_00465	COG4235	cytochrome complex assembly
CEJ55_00470	COG3088	subunit of a heme lyase
CEJ55_00475	COG1138	Cytochrome C-type biogenesis protein
CEJ55_00480	COG3301	Polysulphide reductase, NrfD
CEJ55_00485	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_00490	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CEJ55_00505	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CEJ55_00510	COG3162	membrane
CEJ55_00520	COG1357	PFAM Pentapeptide repeats (8 copies)
CEJ55_00525	COG0025	NhaP-type Na H and K H
CEJ55_00530	COG2252	PERMEase
CEJ55_00550	COG0789	Transcriptional regulator
CEJ55_00555	COG2207	Transcriptional regulator
CEJ55_00560	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CEJ55_00575	COG0629	single-stranded DNA binding
CEJ55_00580	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CEJ55_00585	COG2315	Protein conserved in bacteria
CEJ55_00590	COG0432	Pfam Uncharacterised protein family UPF0047
CEJ55_00595	COG3700	Belongs to the class B bacterial acid phosphatase family
CEJ55_00605	COG1448	Aminotransferase
CEJ55_00610	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CEJ55_00615	COG0305	Participates in initiation and elongation during chromosome replication
CEJ55_00620	COG0604	alcohol dehydrogenase
CEJ55_00630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CEJ55_00645	COG0735	belongs to the Fur family
CEJ55_00650	COG3237	CsbD-like
CEJ55_00655	COG0534	Mate efflux family protein
CEJ55_00665	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CEJ55_00690	COG1357	PFAM Pentapeptide repeats (8 copies)
CEJ55_00710	COG3842	ATPase activity
CEJ55_00720	COG2182	Extracellular solute-binding protein
CEJ55_00725	COG1175	transmembrane transport
CEJ55_00730	COG3833	ABC-type maltose transport systems, permease component
CEJ55_00735	COG0477	Major facilitator Superfamily
CEJ55_00735	COG2814	Major facilitator Superfamily
CEJ55_00750	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEJ55_00785	COG0527	aspartate kinase activity
CEJ55_00790	COG0542	response to heat
CEJ55_00795	COG3541	Predicted nucleotidyltransferase
CEJ55_00810	COG1187	pseudouridine synthase activity
CEJ55_00820	COG1283	sodium-dependent phosphate transmembrane transporter activity
CEJ55_00825	COG1410	methionine synthase
CEJ55_00825	COG0646	methionine synthase
CEJ55_00830	COG1414	Transcriptional regulator
CEJ55_00845	COG2224	Isocitrate lyase
CEJ55_00850	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CEJ55_00860	COG0456	acetyltransferase
CEJ55_00895	COG0151	Belongs to the GarS family
CEJ55_00900	COG2204	response regulator
CEJ55_00905	COG4191	Histidine kinase
CEJ55_00915	COG3678	ATP-independent chaperone mediated protein folding
CEJ55_00925	COG0776	regulation of translation
CEJ55_00930	COG3068	Protein conserved in bacteria
CEJ55_00965	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CEJ55_00970	COG2104	thiamine diphosphate biosynthetic process
CEJ55_00980	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CEJ55_01025	COG0250	Participates in transcription elongation, termination and antitermination
CEJ55_01030	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CEJ55_01075	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CEJ55_01075	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CEJ55_01110	COG4206	TonB-dependent receptor
CEJ55_01140	COG0583	DNA-binding transcription factor activity
CEJ55_01145	COG2271	Major facilitator Superfamily
CEJ55_01150	COG4948	Mandelate Racemase Muconate Lactonizing
CEJ55_01160	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CEJ55_01165	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CEJ55_01180	COG2194	sulfuric ester hydrolase activity
CEJ55_01185	COG2207	Transcriptional regulator
CEJ55_01190	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_01195	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CEJ55_01205	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_01210	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_01215	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CEJ55_01215	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_01215	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_01220	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CEJ55_01225	COG0371	Dehydrogenase
CEJ55_01230	COG3738	Protein conserved in bacteria
CEJ55_01235	COG0697	spore germination
CEJ55_01240	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
CEJ55_01245	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CEJ55_01250	COG0527	aspartate kinase activity
CEJ55_01250	COG0460	homoserine dehydrogenase
CEJ55_01255	COG0626	cystathionine gamma-synthase activity
CEJ55_01300	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CEJ55_01305	COG1609	Transcriptional regulator
CEJ55_01310	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CEJ55_01325	COG1575	Belongs to the MenA family. Type 1 subfamily
CEJ55_01340	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CEJ55_01350	COG1494	fructose-1,6-bisphosphatase
CEJ55_01360	COG0589	response to stress
CEJ55_01365	COG3691	Protein conserved in bacteria
CEJ55_01370	COG3152	Membrane
CEJ55_01395	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CEJ55_01410	COG3678	ATP-independent chaperone mediated protein folding
CEJ55_01415	COG0745	RESPONSE REGULATOR receiver
CEJ55_01420	COG2205	protein histidine kinase activity
CEJ55_01430	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_01440	COG2258	MOSC domain
CEJ55_01455	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CEJ55_01495	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_01500	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_01500	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_01505	COG1363	Peptidase, m42
CEJ55_01510	COG3711	transcriptional antiterminator
CEJ55_01510	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_01530	COG3383	formate dehydrogenase (NAD+) activity
CEJ55_01530	COG0243	molybdopterin cofactor binding
CEJ55_01535	COG3383	formate dehydrogenase (NAD+) activity
CEJ55_01535	COG0243	molybdopterin cofactor binding
CEJ55_01540	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_01545	COG2864	formate dehydrogenase
CEJ55_01555	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CEJ55_01560	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CEJ55_01575	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
CEJ55_01585	COG0456	acetyltransferase
CEJ55_01600	COG1011	Hydrolase
CEJ55_01605	COG1349	DNA-binding transcription factor activity
CEJ55_01610	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_01615	COG2084	Dehydrogenase
CEJ55_01620	COG3684	Belongs to the aldolase LacD family
CEJ55_01625	COG2942	2-epimerase
CEJ55_01630	COG2017	converts alpha-aldose to the beta-anomer
CEJ55_01635	COG1501	Belongs to the glycosyl hydrolase 31 family
CEJ55_01640	COG2211	Major facilitator Superfamily
CEJ55_01645	COG2211	Major facilitator Superfamily
CEJ55_01650	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CEJ55_01655	COG2271	Major facilitator Superfamily
CEJ55_01660	COG1082	Xylose isomerase domain protein TIM barrel
CEJ55_01665	COG2188	Transcriptional regulator
CEJ55_01680	COG0174	glutamine synthetase
CEJ55_01685	COG3852	Histidine kinase
CEJ55_01690	COG2204	response regulator
CEJ55_01700	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CEJ55_01720	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CEJ55_01720	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CEJ55_01730	COG0204	Acyl-transferase
CEJ55_01735	COG5339	Protein conserved in bacteria
CEJ55_01740	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CEJ55_01745	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CEJ55_01750	COG3084	Protein conserved in bacteria
CEJ55_01755	COG0746	molybdenum cofactor guanylyltransferase activity
CEJ55_01760	COG1763	Mo-molybdopterin cofactor biosynthetic process
CEJ55_01790	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
CEJ55_01795	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CEJ55_01800	COG1739	Uncharacterized protein family UPF0029
CEJ55_01815	COG0183	Belongs to the thiolase family
CEJ55_01820	COG0543	2 iron, 2 sulfur cluster binding
CEJ55_01825	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CEJ55_01830	COG0250	Participates in transcription elongation, termination and antitermination
CEJ55_01840	COG0805	protein transport
CEJ55_01845	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CEJ55_01850	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CEJ55_01860	COG3165	ubiquinone biosynthetic process from chorismate
CEJ55_01870	COG1322	Protein conserved in bacteria
CEJ55_01875	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
CEJ55_01880	COG0412	Dienelactone hydrolase
CEJ55_01890	COG0583	DNA-binding transcription factor activity
CEJ55_01900	COG0561	phosphatase activity
CEJ55_01905	COG2267	carboxylic ester hydrolase activity
CEJ55_01910	COG1280	lysine exporter protein (LysE YggA)
CEJ55_01915	COG1280	lysine exporter protein (LysE YggA)
CEJ55_01920	COG0514	ATP-dependent DNA helicase (RecQ)
CEJ55_01925	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
CEJ55_01930	COG2050	protein possibly involved in aromatic compounds catabolism
CEJ55_01935	COG2962	Rard protein
CEJ55_01950	COG0598	Magnesium transport protein CorA
CEJ55_01965	COG0598	Magnesium transport protein CorA
CEJ55_01970	COG3698	Phosphodiester glycosidase
CEJ55_01975	COG0210	DNA helicase
CEJ55_01980	COG1011	Hydrolase
CEJ55_01990	COG3159	Protein conserved in bacteria
CEJ55_02000	COG5567	small periplasmic lipoprotein
CEJ55_02025	COG3072	Adenylate cyclase
CEJ55_02040	COG1587	Uroporphyrinogen-III synthase
CEJ55_02045	COG2959	enzyme of heme biosynthesis
CEJ55_02050	COG3071	HemY protein
CEJ55_02055	COG0641	radical SAM
CEJ55_02080	COG1113	amino acid transport
CEJ55_02100	COG2244	polysaccharide biosynthetic process
CEJ55_02105	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CEJ55_02110	COG0456	acetyltransferase
CEJ55_02115	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CEJ55_02120	COG1088	dTDP-glucose 4,6-dehydratase activity
CEJ55_02125	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CEJ55_02130	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CEJ55_02135	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CEJ55_02140	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CEJ55_02150	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CEJ55_02160	COG3118	belongs to the thioredoxin family
CEJ55_02180	COG0210	DNA helicase
CEJ55_02185	COG3692	DNA binding
CEJ55_02190	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CEJ55_02200	COG0583	DNA-binding transcription factor activity
CEJ55_02205	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CEJ55_02215	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CEJ55_02220	COG3978	acetolactate synthase activity
CEJ55_02235	COG0606	chelatase, subunit chli
CEJ55_02240	COG3085	chromosome segregation
CEJ55_02280	COG2186	Transcriptional regulator
CEJ55_02285	COG0477	Major facilitator Superfamily
CEJ55_02290	COG1609	Transcriptional regulator
CEJ55_02295	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_02300	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_02305	COG1172	Belongs to the binding-protein-dependent transport system permease family
CEJ55_02340	COG1522	sequence-specific DNA binding
CEJ55_02345	COG0716	FMN binding
CEJ55_02360	COG3312	ion transport
CEJ55_02415	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CEJ55_02425	COG3121	Chaperone
CEJ55_02430	COG3188	usher protein
CEJ55_02440	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CEJ55_02445	COG0573	inorganic phosphate transmembrane transporter activity
CEJ55_02450	COG0581	inorganic phosphate transmembrane transporter activity
CEJ55_02455	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CEJ55_02460	COG0704	Plays a role in the regulation of phosphate uptake
CEJ55_02465	COG3711	transcriptional antiterminator
CEJ55_02470	COG1263	PTS System
CEJ55_02470	COG2190	(PTS) system
CEJ55_02470	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_02475	COG2723	6-phospho-beta-galactosidase activity
CEJ55_02485	COG2382	esterase
CEJ55_02490	COG0363	glucosamine-6-phosphate deaminase activity
CEJ55_02495	COG3196	Protein conserved in bacteria
CEJ55_02505	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CEJ55_02510	COG2252	PERMEase
CEJ55_02515	COG0431	NADPH-dependent FMN reductase
CEJ55_02520	COG2091	lysine biosynthetic process via aminoadipic acid
CEJ55_02535	COG0814	amino acid
CEJ55_02585	COG0592	DNA-directed DNA polymerase activity
CEJ55_02595	COG0187	DNA topoisomerase II activity
CEJ55_02600	COG3753	Protein conserved in bacteria
CEJ55_02605	COG0561	phosphatase activity
CEJ55_02615	COG2186	Transcriptional regulator
CEJ55_02620	COG3734	2-keto-3-deoxy-galactonokinase
CEJ55_02625	COG0800	Aldolase
CEJ55_02635	COG2271	Major facilitator Superfamily
CEJ55_02645	COG0823	Involved in the tonB-independent uptake of proteins
CEJ55_02650	COG5645	(Lipo)protein
CEJ55_02670	COG2188	Transcriptional regulator
CEJ55_02690	COG2207	Transcriptional regulator
CEJ55_02695	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CEJ55_02700	COG3119	arylsulfatase activity
CEJ55_02710	COG2149	membrane
CEJ55_02720	COG0641	radical SAM
CEJ55_02725	COG2814	Major facilitator Superfamily
CEJ55_02760	COG0028	Belongs to the TPP enzyme family
CEJ55_02765	COG0440	acetolactate synthase activity
CEJ55_02770	COG2197	response regulator
CEJ55_02775	COG3851	Histidine kinase
CEJ55_02780	COG2271	Major facilitator Superfamily
CEJ55_02785	COG2271	Major facilitator Superfamily
CEJ55_02795	COG2252	PERMEase
CEJ55_02825	COG1464	Belongs to the NlpA lipoprotein family
CEJ55_02830	COG0697	spore germination
CEJ55_02835	COG2814	Major facilitator Superfamily
CEJ55_02850	COG2211	Major facilitator Superfamily
CEJ55_02855	COG1501	Belongs to the glycosyl hydrolase 31 family
CEJ55_02860	COG2982	Protein involved in outer membrane biogenesis
CEJ55_02865	COG2233	PERMEase
CEJ55_02870	COG0786	glutamate:sodium symporter activity
CEJ55_02875	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CEJ55_02880	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CEJ55_02885	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CEJ55_02905	COG2860	membrane
CEJ55_02910	COG3645	SOS response
CEJ55_02915	COG1561	YicC-like family, N-terminal region
CEJ55_02945	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CEJ55_02975	COG1519	Transferase
CEJ55_02980	COG0859	PFAM glycosyl transferase family 9
CEJ55_02985	COG0438	transferase activity, transferring glycosyl groups
CEJ55_02990	COG0515	serine threonine protein kinase
CEJ55_03005	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CEJ55_03010	COG1442	glycosyl transferase family 8
CEJ55_03015	COG1216	Glycosyl transferase, family 2
CEJ55_03020	COG3307	-O-antigen
CEJ55_03025	COG0859	PFAM glycosyl transferase family 9
CEJ55_03030	COG0859	PFAM glycosyl transferase family 9
CEJ55_03040	COG0156	8-amino-7-oxononanoate synthase activity
CEJ55_03050	COG1216	Glycosyl transferase, family 2
CEJ55_03055	COG2861	carbohydrate metabolic process
CEJ55_03060	COG4942	peptidase
CEJ55_03075	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CEJ55_03080	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CEJ55_03095	COG1045	serine acetyltransferase
CEJ55_03100	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CEJ55_03110	COG2186	Transcriptional regulator
CEJ55_03115	COG1620	l-lactate permease
CEJ55_03120	COG5295	Hep Hag repeat protein
CEJ55_03145	COG3722	fumarate hydratase activity
CEJ55_03155	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_03155	COG2213	PTS system mannitol-specific
CEJ55_03165	COG1566	PFAM secretion protein HlyD family protein
CEJ55_03190	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEJ55_03195	COG3209	COG3209 Rhs family protein
CEJ55_03210	COG3209	COG3209 Rhs family protein
CEJ55_03215	COG0625	glutathione transferase activity
CEJ55_03225	COG3276	selenocysteine insertion sequence binding
CEJ55_03230	COG1454	alcohol dehydrogenase
CEJ55_03235	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_03250	COG1566	PFAM secretion protein HlyD family protein
CEJ55_03255	COG0583	DNA-binding transcription factor activity
CEJ55_03260	COG3713	MltA-interacting MipA family protein
CEJ55_03270	COG0235	Class ii aldolase
CEJ55_03275	COG3623	hexulose-6-phosphate isomerase
CEJ55_03280	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
CEJ55_03285	COG1070	Carbohydrate kinase
CEJ55_03290	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CEJ55_03295	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CEJ55_03300	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CEJ55_03305	COG2731	YhcH YjgK YiaL family protein
CEJ55_03315	COG1414	Transcriptional regulator
CEJ55_03320	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_03325	COG3977	Valine--pyruvate aminotransferase
CEJ55_03330	COG0366	Alpha amylase catalytic
CEJ55_03335	COG2992	FlgJ-related protein
CEJ55_03340	COG2207	Transcriptional regulator
CEJ55_03340	COG1609	Transcriptional regulator
CEJ55_03345	COG4214	carbohydrate transport
CEJ55_03350	COG1129	ABC transporter
CEJ55_03355	COG4213	ABC transporter substrate-binding protein
CEJ55_03365	COG1070	Carbohydrate kinase
CEJ55_03370	COG4682	membrane
CEJ55_03375	COG4682	membrane
CEJ55_03380	COG3274	enterobacterial common antigen metabolic process
CEJ55_03405	COG1278	Cold shock
CEJ55_03410	COG2944	sequence-specific DNA binding
CEJ55_03425	COG2885	chlorophyll binding
CEJ55_03430	COG0243	molybdopterin cofactor binding
CEJ55_03435	COG0456	acetyltransferase
CEJ55_03440	COG2818	Glycosylase
CEJ55_03445	COG5571	outer membrane autotransporter
CEJ55_03455	COG2223	nitrite transmembrane transporter activity
CEJ55_03485	COG2194	sulfuric ester hydrolase activity
CEJ55_03505	COG0747	negative chemotaxis
CEJ55_03515	COG0601	transmembrane transport
CEJ55_03520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CEJ55_03525	COG0444	Belongs to the ABC transporter superfamily
CEJ55_03530	COG4608	Belongs to the ABC transporter superfamily
CEJ55_03535	COG0814	amino acid
CEJ55_03575	COG2194	sulfuric ester hydrolase activity
CEJ55_03600	COG1215	transferase activity, transferring glycosyl groups
CEJ55_03605	COG1215	transferase activity, transferring glycosyl groups
CEJ55_03610	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
CEJ55_03615	COG0457	Tetratricopeptide repeat
CEJ55_03615	COG3118	belongs to the thioredoxin family
CEJ55_03620	COG2199	diguanylate cyclase activity
CEJ55_03620	COG2200	EAL domain
CEJ55_03640	COG0612	Peptidase, M16
CEJ55_03655	COG2200	EAL domain
CEJ55_03660	COG2982	Protein involved in outer membrane biogenesis
CEJ55_03665	COG0477	Major facilitator Superfamily
CEJ55_03670	COG1295	ribonuclease BN
CEJ55_03675	COG0583	DNA-binding transcription factor activity
CEJ55_03680	COG2197	response regulator
CEJ55_03690	COG1858	cytochrome C peroxidase
CEJ55_03695	COG0076	glutamate decarboxylase activity
CEJ55_03705	COG2207	Transcriptional regulator
CEJ55_03715	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CEJ55_03720	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_03730	COG2771	luxR family
CEJ55_03735	COG3247	response to pH
CEJ55_03750	COG1285	pathogenesis
CEJ55_03755	COG2197	response regulator
CEJ55_03765	COG3065	identical protein binding
CEJ55_03785	COG1393	Belongs to the ArsC family
CEJ55_03790	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CEJ55_03795	COG0640	Transcriptional regulator
CEJ55_03810	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CEJ55_03815	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CEJ55_03820	COG0339	signal peptide processing
CEJ55_03830	COG3104	oligopeptide transport
CEJ55_03840	COG0589	response to stress
CEJ55_03850	COG0306	phosphate transporter
CEJ55_03855	COG2081	HI0933 family
CEJ55_03880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_03885	COG0842	Transport permease protein
CEJ55_03885	COG1129	ABC transporter
CEJ55_03890	COG0842	Transport permease protein
CEJ55_03915	COG0444	Belongs to the ABC transporter superfamily
CEJ55_03920	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CEJ55_03925	COG0601	transmembrane transport
CEJ55_03930	COG0747	negative chemotaxis
CEJ55_03935	COG2091	lysine biosynthetic process via aminoadipic acid
CEJ55_03940	COG0628	permease
CEJ55_03955	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CEJ55_03970	COG3714	YhhN family
CEJ55_03980	COG3776	membrane
CEJ55_03985	COG0742	ribosomal rna small subunit methyltransferase
CEJ55_03990	COG0552	protein localization to endoplasmic reticulum
CEJ55_03995	COG2884	Cell division ATP-binding protein ftsE
CEJ55_04000	COG2177	Part of the ABC transporter FtsEX involved in
CEJ55_04005	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CEJ55_04010	COG0683	leucine binding
CEJ55_04015	COG0456	acetyltransferase
CEJ55_04025	COG0683	leucine binding
CEJ55_04030	COG0559	Belongs to the binding-protein-dependent transport system permease family
CEJ55_04035	COG4177	L-phenylalanine transmembrane transporter activity
CEJ55_04040	COG0411	ABC transporter
CEJ55_04045	COG0410	ABC transporter
CEJ55_04050	COG1653	transport
CEJ55_04055	COG1175	transmembrane transport
CEJ55_04060	COG0395	ABC-type sugar transport system, permease component
CEJ55_04070	COG0584	glycerophosphoryl diester phosphodiesterase
CEJ55_04080	COG0405	Gamma-glutamyltransferase
CEJ55_04100	COG3157	Type VI secretion system effector, Hcp
CEJ55_04105	COG1247	-acetyltransferase
CEJ55_04115	COG0673	inositol 2-dehydrogenase activity
CEJ55_04120	COG1741	Belongs to the pirin family
CEJ55_04125	COG1609	Transcriptional regulator
CEJ55_04130	COG3265	gluconokinase activity
CEJ55_04135	COG2610	gluconate transmembrane transporter activity
CEJ55_04140	COG0514	ATP-dependent DNA helicase (RecQ)
CEJ55_04150	COG2095	MarC family integral membrane protein
CEJ55_04155	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CEJ55_04180	COG0058	SHG alpha-glucan phosphorylase activity
CEJ55_04190	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CEJ55_04210	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CEJ55_04225	COG1349	DNA-binding transcription factor activity
CEJ55_04230	COG4650	regulator
CEJ55_04235	COG1690	Belongs to the RtcB family
CEJ55_04250	COG0058	SHG alpha-glucan phosphorylase activity
CEJ55_04255	COG1640	4-alpha-glucanotransferase
CEJ55_04260	COG2610	gluconate transmembrane transporter activity
CEJ55_04295	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CEJ55_04300	COG1918	ferrous iron import across plasma membrane
CEJ55_04310	COG2183	response to ionizing radiation
CEJ55_04315	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CEJ55_04325	COG0745	RESPONSE REGULATOR receiver
CEJ55_04330	COG2205	protein histidine kinase activity
CEJ55_04355	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CEJ55_04365	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CEJ55_04370	COG1011	Hydrolase
CEJ55_04380	COG0494	nUDIX hydrolase
CEJ55_04385	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CEJ55_04390	COG4972	Pilus assembly protein
CEJ55_04395	COG3166	PFAM Fimbrial assembly family protein
CEJ55_04410	COG4796	Type ii and iii secretion system protein
CEJ55_04430	COG3266	domain, Protein
CEJ55_04435	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CEJ55_04440	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CEJ55_04450	COG0180	Tryptophanyl-tRNA synthetase
CEJ55_04455	COG2188	Transcriptional regulator
CEJ55_04465	COG3457	Alanine racemase
CEJ55_04470	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CEJ55_04475	COG1735	metal-dependent hydrolase with the TIM-barrel fold
CEJ55_04490	COG0626	cystathionine gamma-synthase activity
CEJ55_04495	COG2188	Transcriptional regulator
CEJ55_04505	COG1082	Xylose isomerase domain protein TIM barrel
CEJ55_04515	COG2222	sugar isomerase
CEJ55_04520	COG0531	amino acid
CEJ55_04535	COG2116	formate transmembrane transporter activity
CEJ55_04540	COG2146	nitrite reductase [NAD(P)H] activity
CEJ55_04545	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CEJ55_04555	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CEJ55_04565	COG2184	nucleotidyltransferase activity
CEJ55_04570	COG0512	Glutamine amidotransferase of anthranilate synthase
CEJ55_04575	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CEJ55_04580	COG1289	transmembrane transporter activity
CEJ55_04585	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CEJ55_04595	COG1765	OsmC-like protein
CEJ55_04600	COG3954	Phosphoribulokinase
CEJ55_04610	COG0429	hydrolase of the alpha beta-hydrolase fold
CEJ55_04615	COG0488	(ABC) transporter
CEJ55_04635	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CEJ55_04640	COG1047	Peptidyl-prolyl cis-trans
CEJ55_04650	COG0545	Peptidyl-prolyl cis-trans isomerase
CEJ55_04655	COG2964	Protein conserved in bacteria
CEJ55_04700	COG2906	2 iron, 2 sulfur cluster binding
CEJ55_04735	COG0089	rRNA binding
CEJ55_04825	COG0201	protein transport
CEJ55_04835	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CEJ55_04865	COG0789	Transcriptional regulator
CEJ55_04870	COG3036	rescue of stalled ribosome
CEJ55_04880	COG0569	domain protein
CEJ55_04900	COG0758	DNA mediated transformation
CEJ55_04910	COG0551	DNA topoisomerase type I activity
CEJ55_04930	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CEJ55_04970	COG1126	abc transporter atp-binding protein
CEJ55_04975	COG0765	amino acid transport
CEJ55_04980	COG4597	amino acid ABC transporter
CEJ55_04985	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_05000	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CEJ55_05005	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_05015	COG1309	transcriptional regulator
CEJ55_05025	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CEJ55_05030	COG0582	viral genome integration into host DNA
CEJ55_05090	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CEJ55_05100	COG4145	pantothenate transmembrane transporter activity
CEJ55_05105	COG3924	membrane
CEJ55_05110	COG0439	Biotin carboxylase
CEJ55_05115	COG0511	ligase activity, forming carbon-carbon bonds
CEJ55_05125	COG0604	alcohol dehydrogenase
CEJ55_05130	COG2200	EAL domain
CEJ55_05130	COG2199	diguanylate cyclase activity
CEJ55_05145	COG1077	Cell shape determining protein MreB Mrl
CEJ55_05150	COG1792	Involved in formation and maintenance of cell shape
CEJ55_05155	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CEJ55_05165	COG1530	ribonuclease E activity
CEJ55_05170	COG3164	Protein of unknown function
CEJ55_05175	COG0312	modulator of DNA gyrase
CEJ55_05180	COG0583	DNA-binding transcription factor activity
CEJ55_05200	COG2732	(Barnase) inhibitor
CEJ55_05220	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CEJ55_05225	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CEJ55_05230	COG3105	Protein conserved in bacteria
CEJ55_05235	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CEJ55_05265	COG0625	glutathione transferase activity
CEJ55_05270	COG2969	positive regulation of protein catabolic process
CEJ55_05275	COG3069	C4-dicarboxylate transmembrane transporter activity
CEJ55_05310	COG2731	YhcH YjgK YiaL family protein
CEJ55_05320	COG4804	nuclease activity
CEJ55_05325	COG0493	'glutamate synthase
CEJ55_05330	COG0069	glutamate synthase activity
CEJ55_05330	COG0067	glutamate synthase
CEJ55_05330	COG0070	glutamate synthase
CEJ55_05345	COG1242	4 iron, 4 sulfur cluster binding
CEJ55_05350	COG5002	protein histidine kinase activity
CEJ55_05350	COG0784	Response regulator, receiver
CEJ55_05350	COG2198	Histidine kinase
CEJ55_05355	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CEJ55_05365	COG0515	serine threonine protein kinase
CEJ55_05370	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_05380	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_05385	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CEJ55_05390	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CEJ55_05395	COG1137	ATPase activity
CEJ55_05400	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CEJ55_05405	COG3117	lipopolysaccharide transmembrane transporter activity
CEJ55_05410	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CEJ55_05415	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CEJ55_05415	COG0517	IMP dehydrogenase activity
CEJ55_05420	COG0530	calcium, potassium:sodium antiporter activity
CEJ55_05425	COG1127	ABC transporter
CEJ55_05430	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CEJ55_05435	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CEJ55_05440	COG2854	intermembrane phospholipid transfer
CEJ55_05445	COG3113	response to antibiotic
CEJ55_05450	COG5007	Belongs to the BolA IbaG family
CEJ55_05460	COG3423	Transcriptional regulator
CEJ55_05465	COG0142	geranyltranstransferase activity
CEJ55_05480	COG0697	spore germination
CEJ55_05490	COG2027	D-alanyl-D-alanine carboxypeptidase
CEJ55_05495	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CEJ55_05500	COG1534	Rna-binding protein
CEJ55_05510	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CEJ55_05515	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CEJ55_05525	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CEJ55_05535	COG2194	sulfuric ester hydrolase activity
CEJ55_05555	COG0195	Participates in both transcription termination and antitermination
CEJ55_05585	COG4785	May be involved in cell division
CEJ55_05595	COG0513	Belongs to the DEAD box helicase family
CEJ55_05600	COG0814	amino acid
CEJ55_05605	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CEJ55_05625	COG3153	acetyltransferase
CEJ55_05640	COG0693	protein deglycase activity
CEJ55_05645	COG0702	epimerase
CEJ55_05650	COG0701	Predicted permease
CEJ55_05655	COG2823	Periplasmic or secreted lipoprotein
CEJ55_05660	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CEJ55_05675	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CEJ55_05680	COG3539	Fimbrial protein
CEJ55_05685	COG3188	usher protein
CEJ55_05690	COG3121	Chaperone
CEJ55_05695	COG3539	Fimbrial protein
CEJ55_05700	COG0363	glucosamine-6-phosphate deaminase activity
CEJ55_05705	COG3716	PTS system mannose fructose sorbose family IID component
CEJ55_05710	COG3715	PTS system
CEJ55_05715	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_05725	COG2222	sugar isomerase
CEJ55_05730	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CEJ55_05735	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_05740	COG3716	PTS system mannose fructose sorbose family IID component
CEJ55_05750	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_05765	COG1349	DNA-binding transcription factor activity
CEJ55_05775	COG2002	toxin-antitoxin pair type II binding
CEJ55_05780	COG2721	sulfolactate sulfo-lyase activity
CEJ55_05785	COG2271	Major facilitator Superfamily
CEJ55_05795	COG2084	Dehydrogenase
CEJ55_05800	COG1929	Belongs to the glycerate kinase type-1 family
CEJ55_05825	COG0583	DNA-binding transcription factor activity
CEJ55_05835	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CEJ55_05845	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CEJ55_05850	COG1882	Formate acetyltransferase
CEJ55_05855	COG0251	oxidation-reduction process
CEJ55_05860	COG1760	l-serine dehydratase
CEJ55_05865	COG0814	amino acid
CEJ55_05880	COG1741	Belongs to the pirin family
CEJ55_05885	COG0583	DNA-binding transcription factor activity
CEJ55_05895	COG3152	Membrane
CEJ55_05900	COG3152	Membrane
CEJ55_05905	COG0435	Glutathione S-transferase
CEJ55_05910	COG2259	Doxx family
CEJ55_05920	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CEJ55_05925	COG4575	ribosome binding
CEJ55_05930	COG1422	Protein of unknown function (DUF1090)
CEJ55_05940	COG0586	Pfam SNARE associated Golgi protein
CEJ55_05945	COG2186	Transcriptional regulator
CEJ55_05970	COG2271	Major facilitator Superfamily
CEJ55_05980	COG2721	sulfolactate sulfo-lyase activity
CEJ55_05990	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CEJ55_05995	COG0861	Integral membrane protein TerC family
CEJ55_06000	COG0673	inositol 2-dehydrogenase activity
CEJ55_06005	COG2949	membrane
CEJ55_06010	COG1451	nucleotide metabolic process
CEJ55_06020	COG4680	protein conserved in bacteria
CEJ55_06025	COG5499	transcription regulator containing HTH domain
CEJ55_06030	COG1902	pentaerythritol trinitrate reductase activity
CEJ55_06030	COG0446	pyridine nucleotide-disulphide oxidoreductase
CEJ55_06035	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
CEJ55_06035	COG3408	Glycogen debranching enzyme
CEJ55_06045	COG0531	amino acid
CEJ55_06050	COG2731	YhcH YjgK YiaL family protein
CEJ55_06055	COG3250	beta-galactosidase activity
CEJ55_06060	COG1609	Transcriptional regulator
CEJ55_06070	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CEJ55_06085	COG0840	transmembrane signaling receptor activity
CEJ55_06090	COG1695	Transcriptional regulator
CEJ55_06100	COG2375	cellular response to nickel ion
CEJ55_06115	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CEJ55_06125	COG0358	DNA primase activity
CEJ55_06140	COG0471	metal ion transport
CEJ55_06160	COG0583	DNA-binding transcription factor activity
CEJ55_06170	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CEJ55_06185	COG4991	sh3 domain protein
CEJ55_06195	COG3025	triphosphatase activity
CEJ55_06215	COG2268	Band 7 protein
CEJ55_06220	COG1585	Membrane protein implicated in regulation of membrane protease activity
CEJ55_06230	COG3539	Fimbrial protein
CEJ55_06235	COG3121	Chaperone
CEJ55_06240	COG3188	usher protein
CEJ55_06245	COG3539	Fimbrial protein
CEJ55_06250	COG2960	long-chain fatty acid transporting porin activity
CEJ55_06270	COG3384	dioxygenase
CEJ55_06275	COG0754	glutathionylspermidine amidase activity
CEJ55_06290	COG1538	Outer membrane efflux protein
CEJ55_06295	COG0494	nUDIX hydrolase
CEJ55_06300	COG3151	Protein conserved in bacteria
CEJ55_06305	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CEJ55_06310	COG3150	esterase
CEJ55_06315	COG0187	DNA topoisomerase II activity
CEJ55_06320	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CEJ55_06325	COG2249	NAD(P)H dehydrogenase (quinone) activity
CEJ55_06335	COG0642	Histidine kinase
CEJ55_06340	COG0745	RESPONSE REGULATOR receiver
CEJ55_06345	COG3111	PFAM Bacterial OB fold (BOF) protein
CEJ55_06350	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CEJ55_06360	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CEJ55_06365	COG0204	Acyl-transferase
CEJ55_06370	COG2132	Multicopper oxidase
CEJ55_06375	COG1032	radical SAM domain protein
CEJ55_06380	COG4238	major outer membrane lipoprotein
CEJ55_06390	COG0656	L-ascorbic acid biosynthetic process
CEJ55_06395	COG1979	alcohol dehydrogenase
CEJ55_06400	COG2207	Transcriptional regulator
CEJ55_06405	COG0586	Pfam SNARE associated Golgi protein
CEJ55_06410	COG0626	cystathionine gamma-synthase activity
CEJ55_06420	COG0811	peptide transport
CEJ55_06425	COG0848	biopolymer transport protein
CEJ55_06430	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_06440	COG0667	Aldo Keto reductase
CEJ55_06460	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CEJ55_06465	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_06470	COG5557	Pfam Polysulphide reductase, NrfD
CEJ55_06475	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CEJ55_06480	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CEJ55_06485	COG1773	rubredoxin
CEJ55_06490	COG0375	protein maturation
CEJ55_06495	COG0298	carbon dioxide binding
CEJ55_06500	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_06510	COG0625	glutathione transferase activity
CEJ55_06515	COG0754	glutathionylspermidine amidase activity
CEJ55_06525	COG0306	phosphate transporter
CEJ55_06530	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CEJ55_06535	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CEJ55_06540	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CEJ55_06545	COG2244	polysaccharide biosynthetic process
CEJ55_06555	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CEJ55_06560	COG0795	lipopolysaccharide-transporting ATPase activity
CEJ55_06570	COG0156	8-amino-7-oxononanoate synthase activity
CEJ55_06575	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CEJ55_06585	COG0318	PFAM AMP-dependent synthetase and ligase
CEJ55_06595	COG0456	acetyltransferase
CEJ55_06600	COG2186	Transcriptional regulator
CEJ55_06605	COG0277	FAD linked oxidase domain protein
CEJ55_06610	COG0277	FAD linked oxidase domain protein
CEJ55_06615	COG0247	lactate metabolic process
CEJ55_06620	COG3193	protein, possibly involved in utilization of glycolate and propanediol
CEJ55_06625	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CEJ55_06630	COG1620	l-lactate permease
CEJ55_06640	COG3064	Membrane
CEJ55_06665	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CEJ55_06670	COG1459	type II secretion system
CEJ55_06675	COG2165	general secretion pathway protein
CEJ55_06690	COG4795	General secretion pathway protein
CEJ55_06705	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
CEJ55_06710	COG2200	EAL domain
CEJ55_06710	COG2771	luxR family
CEJ55_06745	COG2003	Belongs to the UPF0758 family
CEJ55_06765	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_06775	COG4983	Phage plasmid primase, P4 family domain protein
CEJ55_06830	COG2831	hemolysin activation secretion protein
CEJ55_06835	COG2994	toxin metabolic process
CEJ55_06880	COG3385	transposase activity
CEJ55_06890	COG3436	PFAM IS66 Orf2 family protein
CEJ55_06900	COG2200	EAL domain
CEJ55_06900	COG2771	luxR family
CEJ55_06940	COG4372	Transposase
CEJ55_06945	COG3436	PFAM IS66 Orf2 family protein
CEJ55_06965	COG3436	PFAM IS66 Orf2 family protein
CEJ55_06975	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CEJ55_06975	COG5295	Hep Hag repeat protein
CEJ55_07005	COG2207	Transcriptional regulator
CEJ55_07055	COG0582	viral genome integration into host DNA
CEJ55_07065	COG1309	transcriptional regulator
CEJ55_07080	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CEJ55_07085	COG1027	Aspartate ammonia-lyase
CEJ55_07090	COG3030	protein affecting phage T7 exclusion by the F plasmid
CEJ55_07095	COG0531	amino acid
CEJ55_07120	COG1509	lysine 2,3-aminomutase activity
CEJ55_07130	COG5510	response to toxic substance
CEJ55_07135	COG5510	response to toxic substance
CEJ55_07140	COG2076	Multidrug Resistance protein
CEJ55_07145	COG3040	lipid binding
CEJ55_07150	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CEJ55_07165	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CEJ55_07170	COG1053	succinate dehydrogenase
CEJ55_07180	COG0531	amino acid
CEJ55_07195	COG3264	Mechanosensitive ion channel
CEJ55_07195	COG1511	domain protein
CEJ55_07235	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CEJ55_07240	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CEJ55_07240	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CEJ55_07245	COG0802	atpase or kinase
CEJ55_07250	COG0860	N-Acetylmuramoyl-L-alanine amidase
CEJ55_07270	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CEJ55_07275	COG0330	HflC and HflK could
CEJ55_07280	COG0330	HflC and HflK could
CEJ55_07285	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CEJ55_07300	COG0557	exoribonuclease II activity
CEJ55_07305	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CEJ55_07310	COG3789	protein conserved in bacteria
CEJ55_07315	COG1842	Phage shock protein A
CEJ55_07325	COG3766	membrane
CEJ55_07330	COG5463	Belongs to the UPF0441 family
CEJ55_07335	COG0754	glutathionylspermidine amidase activity
CEJ55_07340	COG1960	acyl-CoA dehydrogenase activity
CEJ55_07355	COG3650	response to hydrogen peroxide
CEJ55_07360	COG1073	alpha beta
CEJ55_07375	COG3037	sugar-specific permease SgaT UlaA
CEJ55_07380	COG3414	Phosphotransferase system galactitol-specific IIB component
CEJ55_07405	COG3477	response to acidic pH
CEJ55_07450	COG1943	Transposase
CEJ55_07455	COG0675	Transposase, IS605 OrfB family
CEJ55_07465	COG3061	Opacity-associated protein A
CEJ55_07475	COG0545	Peptidyl-prolyl cis-trans isomerase
CEJ55_07480	COG1113	amino acid transport
CEJ55_07490	COG0697	spore germination
CEJ55_07495	COG0702	epimerase
CEJ55_07500	COG1733	regulation of RNA biosynthetic process
CEJ55_07505	COG0737	Belongs to the 5'-nucleotidase family
CEJ55_07510	COG1218	3'(2'),5'-bisphosphate nucleotidase
CEJ55_07515	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CEJ55_07525	COG1253	flavin adenine dinucleotide binding
CEJ55_07540	COG0729	surface antigen
CEJ55_07545	COG2911	Protein conserved in bacteria
CEJ55_07550	COG2105	PFAM AIG2 family protein
CEJ55_07555	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CEJ55_07560	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_07565	COG1129	ABC transporter
CEJ55_07570	COG1172	Belongs to the binding-protein-dependent transport system permease family
CEJ55_07575	COG1172	Belongs to the binding-protein-dependent transport system permease family
CEJ55_07585	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CEJ55_07595	COG0312	modulator of DNA gyrase
CEJ55_07600	COG3783	Cytochrome b(562)
CEJ55_07605	COG0602	queuosine metabolic process
CEJ55_07610	COG1328	CTP reductase activity
CEJ55_07615	COG0366	Alpha amylase catalytic
CEJ55_07620	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_07620	COG1263	PTS System
CEJ55_07625	COG1609	Transcriptional regulator
CEJ55_07630	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CEJ55_07640	COG0251	oxidation-reduction process
CEJ55_07665	COG0251	oxidation-reduction process
CEJ55_07670	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_07675	COG1309	transcriptional regulator
CEJ55_07680	COG2731	YhcH YjgK YiaL family protein
CEJ55_07700	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
CEJ55_07705	COG0456	acetyltransferase
CEJ55_07710	COG4269	membrane
CEJ55_07715	COG0525	valine-tRNA ligase activity
CEJ55_07720	COG2927	DNA polymerase III (CHI subunit)
CEJ55_07730	COG0795	lipopolysaccharide-transporting ATPase activity
CEJ55_07735	COG0795	lipopolysaccharide-transporting ATPase activity
CEJ55_07740	COG0433	COG0433 Predicted ATPase
CEJ55_07745	COG1064	alcohol dehydrogenase
CEJ55_07815	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CEJ55_07830	COG0582	viral genome integration into host DNA
CEJ55_07835	COG4974	Belongs to the 'phage' integrase family
CEJ55_07845	COG3539	Fimbrial protein
CEJ55_07850	COG3539	Fimbrial protein
CEJ55_07855	COG3121	Chaperone
CEJ55_07860	COG3188	usher protein
CEJ55_07865	COG3539	Fimbrial protein
CEJ55_07870	COG3539	Fimbrial protein
CEJ55_07875	COG3539	Fimbrial protein
CEJ55_07880	COG2610	gluconate transmembrane transporter activity
CEJ55_07895	COG0246	Mannitol dehydrogenase
CEJ55_07905	COG2186	Transcriptional regulator
CEJ55_07930	COG0583	DNA-binding transcription factor activity
CEJ55_07935	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CEJ55_07940	COG0700	Nucleoside recognition
CEJ55_07945	COG3366	ferrous iron transmembrane transporter activity
CEJ55_07960	COG0477	Major facilitator Superfamily
CEJ55_07975	COG1924	4 iron, 4 sulfur cluster binding
CEJ55_07980	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CEJ55_07985	COG2733	membrane
CEJ55_07990	COG2814	Major facilitator Superfamily
CEJ55_08005	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CEJ55_08010	COG5457	Domain of unknown function (DUF1127)
CEJ55_08020	COG0523	cobalamin synthesis protein
CEJ55_08025	COG2879	small protein
CEJ55_08030	COG1966	Carbon starvation protein
CEJ55_08040	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CEJ55_08045	COG2368	4-hydroxyphenylacetate
CEJ55_08065	COG3971	2-oxopent-4-enoate hydratase activity
CEJ55_08075	COG3384	dioxygenase
CEJ55_08080	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_08085	COG0179	Fumarylacetoacetate (FAA) hydrolase
CEJ55_08090	COG1846	Transcriptional regulator
CEJ55_08095	COG0840	transmembrane signaling receptor activity
CEJ55_08100	COG2271	Major facilitator Superfamily
CEJ55_08105	COG1802	Transcriptional regulator
CEJ55_08110	COG1063	alcohol dehydrogenase
CEJ55_08125	COG1484	DNA-dependent DNA replication
CEJ55_08140	COG2966	Psort location CytoplasmicMembrane, score
CEJ55_08145	COG2197	response regulator
CEJ55_08150	COG2197	response regulator
CEJ55_08155	COG4114	ferric iron reductase
CEJ55_08185	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CEJ55_08190	COG0456	acetyltransferase
CEJ55_08195	COG1011	Hydrolase
CEJ55_08205	COG2823	Periplasmic or secreted lipoprotein
CEJ55_08215	COG4667	esterase of the alpha-beta hydrolase superfamily
CEJ55_08220	COG0084	hydrolase, TatD family'
CEJ55_08225	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CEJ55_08230	COG1328	CTP reductase activity
CEJ55_08265	COG0560	Phosphoserine phosphatase
CEJ55_08270	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CEJ55_08275	COG3172	ATPase kinase involved in NAD metabolism
CEJ55_08275	COG1056	cytidyltransferase-related domain
CEJ55_08280	COG0488	(ABC) transporter
CEJ55_08290	COG0741	lytic transglycosylase activity
CEJ55_08315	COG3045	CreA protein
CEJ55_08320	COG0745	RESPONSE REGULATOR receiver
CEJ55_08325	COG2205	protein histidine kinase activity
CEJ55_08330	COG4452	Inner membrane protein CreD
CEJ55_08335	COG0745	RESPONSE REGULATOR receiver
CEJ55_08345	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CEJ55_08355	COG0527	aspartate kinase activity
CEJ55_08355	COG0460	homoserine dehydrogenase
CEJ55_08365	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CEJ55_08380	COG1115	amino acid carrier protein
CEJ55_08390	COG0521	Mo-molybdopterin cofactor biosynthetic process
CEJ55_08395	COG1584	GPR1 FUN34 yaaH family protein
CEJ55_08400	COG4735	regulation of single-species biofilm formation
CEJ55_08430	COG0583	DNA-binding transcription factor activity
CEJ55_08460	COG0196	riboflavin kinase activity
CEJ55_08475	COG1047	Peptidyl-prolyl cis-trans
CEJ55_08500	COG0505	Belongs to the CarA family
CEJ55_08505	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CEJ55_08560	COG0644	oxidoreductase
CEJ55_08570	COG2271	Major facilitator Superfamily
CEJ55_08585	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CEJ55_08610	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CEJ55_08615	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CEJ55_08620	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CEJ55_08625	COG0564	pseudouridine synthase activity
CEJ55_08635	COG0417	DNA replication proofreading
CEJ55_08640	COG0235	Class ii aldolase
CEJ55_08660	COG4977	sequence-specific DNA binding
CEJ55_08665	COG0586	Pfam SNARE associated Golgi protein
CEJ55_08675	COG1178	ABC-type Fe3 transport system permease component
CEJ55_08680	COG4143	(ABC) transporter
CEJ55_08685	COG4533	DNA binding
CEJ55_08695	COG2814	Major facilitator Superfamily
CEJ55_08710	COG0473	3-isopropylmalate dehydrogenase activity
CEJ55_08725	COG0583	DNA-binding transcription factor activity
CEJ55_08730	COG0028	Belongs to the TPP enzyme family
CEJ55_08735	COG0440	acetolactate synthase activity
CEJ55_08745	COG1609	Transcriptional regulator
CEJ55_08765	COG3116	cell division
CEJ55_08770	COG0768	penicillin binding
CEJ55_08775	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CEJ55_08780	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CEJ55_08795	COG0772	Belongs to the SEDS family
CEJ55_08810	COG1181	Belongs to the D-alanine--D-alanine ligase family
CEJ55_08815	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CEJ55_08820	COG0849	cell division
CEJ55_08825	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CEJ55_08845	COG0494	nUDIX hydrolase
CEJ55_08860	COG0237	dephospho-CoA kinase activity
CEJ55_08870	COG1459	type II secretion system
CEJ55_08875	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CEJ55_08880	COG4969	Belongs to the N-Me-Phe pilin family
CEJ55_08890	COG0157	Belongs to the NadC ModD family
CEJ55_08895	COG3023	N-Acetylmuramoyl-L-alanine amidase
CEJ55_08900	COG3725	Membrane protein required for beta-lactamase induction
CEJ55_08905	COG1113	amino acid transport
CEJ55_08910	COG2186	Transcriptional regulator
CEJ55_08920	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CEJ55_08925	COG0508	dehydrogenase complex catalyzes the overall conversion of
CEJ55_08930	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CEJ55_08935	COG3064	Membrane
CEJ55_08945	COG1049	propionate catabolic process, 2-methylcitrate cycle
CEJ55_08970	COG2132	Multicopper oxidase
CEJ55_08975	COG4993	Dehydrogenase
CEJ55_08980	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CEJ55_08985	COG0288	reversible hydration of carbon dioxide
CEJ55_08990	COG1131	(ABC) transporter
CEJ55_08995	COG0842	Transport permease protein
CEJ55_09000	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_09005	COG0726	polysaccharide deacetylase
CEJ55_09020	COG5464	transposase or invertase
CEJ55_09035	COG3539	Fimbrial protein
CEJ55_09040	COG3539	Fimbrial protein
CEJ55_09045	COG3539	Fimbrial protein
CEJ55_09050	COG3539	Fimbrial protein
CEJ55_09055	COG3188	usher protein
CEJ55_09060	COG3121	Chaperone
CEJ55_09065	COG3539	Fimbrial protein
CEJ55_09070	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CEJ55_09075	COG0617	tRNA 3'-terminal CCA addition
CEJ55_09080	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CEJ55_09085	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CEJ55_09095	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CEJ55_09100	COG1643	Atp-dependent helicase
CEJ55_09110	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CEJ55_09115	COG4774	siderophore transport
CEJ55_09120	COG1120	ATPase activity
CEJ55_09125	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CEJ55_09130	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CEJ55_09150	COG2860	membrane
CEJ55_09155	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CEJ55_09175	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CEJ55_09180	COG3835	regulator
CEJ55_09200	COG0024	Methionine aminopeptidase
CEJ55_09235	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CEJ55_09240	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CEJ55_09245	COG0575	Belongs to the CDS family
CEJ55_09250	COG0750	zinc metalloprotease
CEJ55_09260	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
CEJ55_09265	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CEJ55_09290	COG0587	DNA-directed DNA polymerase activity
CEJ55_09305	COG0346	lactoylglutathione lyase activity
CEJ55_09315	COG4568	rho-dependent transcription termination
CEJ55_09325	COG4681	YaeQ
CEJ55_09330	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CEJ55_09335	COG3015	lipoprotein NlpE involved in copper resistance
CEJ55_09350	COG1720	tRNA m6t6A37 methyltransferase activity
CEJ55_09360	COG1464	Belongs to the NlpA lipoprotein family
CEJ55_09365	COG2011	ABC-type metal ion transport system permease component
CEJ55_09370	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CEJ55_09375	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CEJ55_09410	COG0656	L-ascorbic acid biosynthetic process
CEJ55_09415	COG0583	DNA-binding transcription factor activity
CEJ55_09425	COG2226	methyltransferase
CEJ55_09430	COG0741	lytic transglycosylase activity
CEJ55_09430	COG1388	LysM domain
CEJ55_09440	COG2226	methyltransferase
CEJ55_09450	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CEJ55_09470	COG4104	PAAR repeat-containing protein
CEJ55_09475	COG3157	Type VI secretion system effector, Hcp
CEJ55_09565	COG3501	Rhs element vgr protein
CEJ55_09575	COG5433	transposase activity
CEJ55_09615	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CEJ55_09625	COG1960	acyl-CoA dehydrogenase activity
CEJ55_09635	COG0121	glutamine amidotransferase
CEJ55_09640	COG3034	peptidoglycan biosynthetic process
CEJ55_09645	COG3041	Addiction module toxin RelE StbE family
CEJ55_09650	COG3077	Addiction module antitoxin, RelB DinJ family
CEJ55_09655	COG0791	NLP P60 protein
CEJ55_09685	COG1987	bacterial-type flagellum assembly
CEJ55_09705	COG2204	response regulator
CEJ55_09710	COG1677	Flagellar hook-basal body complex protein FliE
CEJ55_09720	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEJ55_09740	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CEJ55_09745	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_09780	COG1815	bacterial-type flagellum-dependent cell motility
CEJ55_09785	COG1558	bacterial-type flagellum-dependent cell motility
CEJ55_09795	COG1749	Flagellar hook protein flgE
CEJ55_09800	COG4787	bacterial-type flagellum-dependent cell motility
CEJ55_09805	COG4786	Flagellar basal body rod
CEJ55_09830	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CEJ55_09845	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CEJ55_09855	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CEJ55_09880	COG1191	sigma factor activity
CEJ55_09885	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CEJ55_09900	COG0454	-acetyltransferase
CEJ55_09910	COG1690	Belongs to the RtcB family
CEJ55_09915	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CEJ55_09920	COG2195	Cleaves the N-terminal amino acid of tripeptides
CEJ55_09940	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CEJ55_09960	COG0583	DNA-binding transcription factor activity
CEJ55_09965	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CEJ55_09970	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CEJ55_09975	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CEJ55_09980	COG2080	2 iron, 2 sulfur cluster binding
CEJ55_09990	COG3477	response to acidic pH
CEJ55_10005	COG3121	Chaperone
CEJ55_10015	COG3188	usher protein
CEJ55_10065	COG1388	LysM domain
CEJ55_10070	COG2207	Transcriptional regulator
CEJ55_10070	COG3708	Transcriptional regulator
CEJ55_10075	COG3059	membrane
CEJ55_10085	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CEJ55_10090	COG2207	Transcriptional regulator
CEJ55_10095	COG0247	lactate metabolic process
CEJ55_10100	COG1139	Iron-sulfur cluster binding protein
CEJ55_10105	COG1556	Lactate utilization protein
CEJ55_10145	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CEJ55_10155	COG2771	luxR family
CEJ55_10155	COG2200	EAL domain
CEJ55_10160	COG0583	DNA-binding transcription factor activity
CEJ55_10175	COG0666	response to abiotic stimulus
CEJ55_10185	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CEJ55_10190	COG1304	FMN binding
CEJ55_10195	COG0549	Belongs to the carbamate kinase family
CEJ55_10200	COG0402	S-adenosylhomocysteine deaminase activity
CEJ55_10210	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_10215	COG1129	ABC transporter
CEJ55_10220	COG1172	Belongs to the binding-protein-dependent transport system permease family
CEJ55_10230	COG1064	alcohol dehydrogenase
CEJ55_10245	COG1280	lysine exporter protein (LysE YggA)
CEJ55_10255	COG3829	transcription factor binding
CEJ55_10260	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CEJ55_10265	COG0372	Belongs to the citrate synthase family
CEJ55_10270	COG2079	MmgE PrpD family protein
CEJ55_10275	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CEJ55_10280	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CEJ55_10285	COG0402	S-adenosylhomocysteine deaminase activity
CEJ55_10290	COG0583	DNA-binding transcription factor activity
CEJ55_10295	COG0288	reversible hydration of carbon dioxide
CEJ55_10305	COG2807	transmembrane transport
CEJ55_10310	COG2223	nitrite transmembrane transporter activity
CEJ55_10325	COG1609	Transcriptional regulator
CEJ55_10330	COG1414	Transcriptional regulator
CEJ55_10365	COG2814	Major facilitator Superfamily
CEJ55_10370	COG3122	Protein conserved in bacteria
CEJ55_10400	COG1215	transferase activity, transferring glycosyl groups
CEJ55_10405	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CEJ55_10415	COG4521	taurine ABC transporter
CEJ55_10420	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CEJ55_10425	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CEJ55_10430	COG2175	clavaminate synthase activity
CEJ55_10435	COG0113	porphobilinogen synthase activity
CEJ55_10445	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_10450	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CEJ55_10455	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CEJ55_10465	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CEJ55_10485	COG1181	Belongs to the D-alanine--D-alanine ligase family
CEJ55_10500	COG1785	Belongs to the alkaline phosphatase family
CEJ55_10510	COG3706	GGDEF domain
CEJ55_10515	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CEJ55_10540	COG4126	flavin adenine dinucleotide binding
CEJ55_10565	COG1940	carbohydrate kinase activity
CEJ55_10570	COG2814	Major facilitator Superfamily
CEJ55_10575	COG0419	ATPase involved in DNA repair
CEJ55_10580	COG0420	3'-5' exonuclease activity
CEJ55_10585	COG0745	RESPONSE REGULATOR receiver
CEJ55_10590	COG5002	protein histidine kinase activity
CEJ55_10595	COG1114	Component of the transport system for branched-chain amino acids
CEJ55_10600	COG1113	amino acid transport
CEJ55_10605	COG0366	Alpha amylase catalytic
CEJ55_10625	COG1862	Preprotein translocase
CEJ55_10630	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CEJ55_10635	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CEJ55_10640	COG1403	HNH endonuclease
CEJ55_10645	COG3248	Nucleoside-binding outer membrane protein
CEJ55_10650	COG4238	major outer membrane lipoprotein
CEJ55_10660	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CEJ55_10660	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CEJ55_10675	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CEJ55_10680	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CEJ55_10685	COG0667	Aldo Keto reductase
CEJ55_10695	COG0142	geranyltranstransferase activity
CEJ55_10710	COG0693	protein deglycase activity
CEJ55_10715	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CEJ55_10725	COG2814	Major facilitator Superfamily
CEJ55_10750	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CEJ55_10755	COG1845	cytochrome c oxidase, subunit III
CEJ55_10760	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CEJ55_10765	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CEJ55_10770	COG2223	nitrite transmembrane transporter activity
CEJ55_10775	COG3056	Lipoprotein
CEJ55_10780	COG0271	Belongs to the BolA IbaG family
CEJ55_10805	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CEJ55_10810	COG0776	regulation of translation
CEJ55_10815	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CEJ55_10820	COG1555	photosystem II stabilization
CEJ55_10825	COG0824	Thioesterase
CEJ55_10835	COG4533	DNA binding
CEJ55_10845	COG1522	sequence-specific DNA binding
CEJ55_10850	COG1132	(ABC) transporter
CEJ55_10855	COG1132	(ABC) transporter
CEJ55_10860	COG0347	Belongs to the P(II) protein family
CEJ55_10865	COG0004	ammonium transporteR
CEJ55_10870	COG1946	Acyl-CoA thioesterase
CEJ55_10875	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CEJ55_10880	COG3695	enzyme binding
CEJ55_10890	COG5507	3-demethylubiquinone-9 3-methyltransferase
CEJ55_10895	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CEJ55_10905	COG0110	maltose O-acetyltransferase activity
CEJ55_10920	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CEJ55_10925	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_10930	COG1309	transcriptional regulator
CEJ55_10940	COG3264	Mechanosensitive ion channel
CEJ55_10940	COG1196	nuclear chromosome segregation
CEJ55_10950	COG3923	Primosomal replication protein n
CEJ55_10955	COG2832	Protein of unknown function (DUF454)
CEJ55_10970	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CEJ55_11010	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_11015	COG4651	solute:proton antiporter activity
CEJ55_11015	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CEJ55_11020	COG2223	nitrite transmembrane transporter activity
CEJ55_11030	COG0737	Belongs to the 5'-nucleotidase family
CEJ55_11035	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CEJ55_11045	COG3735	TraB family
CEJ55_11050	COG3093	addiction module antidote protein HigA
CEJ55_11055	COG2217	Heavy metal translocating P-type atpase
CEJ55_11060	COG2066	Belongs to the glutaminase family
CEJ55_11065	COG0531	amino acid
CEJ55_11075	COG0789	Transcriptional regulator
CEJ55_11080	COG1585	Membrane protein implicated in regulation of membrane protease activity
CEJ55_11085	COG0330	HflC and HflK could
CEJ55_11090	COG4619	ABC transporter
CEJ55_11095	COG0390	transport system, permease component
CEJ55_11100	COG3118	belongs to the thioredoxin family
CEJ55_11105	COG0300	oxidoreductase activity
CEJ55_11110	COG2755	lipolytic protein G-D-S-L family
CEJ55_11115	COG4181	ATPase activity
CEJ55_11120	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CEJ55_11125	COG3209	COG3209 Rhs family protein
CEJ55_11135	COG3209	COG3209 Rhs family protein
CEJ55_11155	COG0583	DNA-binding transcription factor activity
CEJ55_11160	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
CEJ55_11165	COG1414	Transcriptional regulator
CEJ55_11170	COG3960	tartronate-semialdehyde synthase activity
CEJ55_11175	COG3622	Belongs to the hyi family
CEJ55_11180	COG2084	Dehydrogenase
CEJ55_11185	COG1953	Uracil, thiamine, allantoin
CEJ55_11195	COG2233	PERMEase
CEJ55_11200	COG1929	Belongs to the glycerate kinase type-1 family
CEJ55_11205	COG3257	ureidoglycine aminohydrolase activity
CEJ55_11210	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CEJ55_11215	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CEJ55_11220	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CEJ55_11225	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CEJ55_11235	COG0549	Belongs to the carbamate kinase family
CEJ55_11240	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CEJ55_11245	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CEJ55_11260	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CEJ55_11270	COG1988	membrane-bound metal-dependent
CEJ55_11275	COG2501	S4 domain
CEJ55_11290	COG3121	Chaperone
CEJ55_11295	COG3188	usher protein
CEJ55_11305	COG3539	Fimbrial protein
CEJ55_11310	COG2197	response regulator
CEJ55_11325	COG2207	Transcriptional regulator
CEJ55_11340	COG4783	chaperone-mediated protein folding
CEJ55_11345	COG1215	transferase activity, transferring glycosyl groups
CEJ55_11350	COG5433	transposase activity
CEJ55_11375	COG3209	COG3209 Rhs family protein
CEJ55_11375	COG4104	PAAR repeat-containing protein
CEJ55_11385	COG3501	Rhs element vgr protein
CEJ55_11395	COG5002	protein histidine kinase activity
CEJ55_11400	COG0745	RESPONSE REGULATOR receiver
CEJ55_11410	COG1538	Outer membrane efflux protein
CEJ55_11415	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_11420	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_11425	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CEJ55_11430	COG1113	amino acid transport
CEJ55_11435	COG0668	transmembrane transport
CEJ55_11440	COG0778	Nitroreductase
CEJ55_11445	COG2315	Protein conserved in bacteria
CEJ55_11480	COG2977	Belongs to the P-Pant transferase superfamily
CEJ55_11485	COG4771	TonB-dependent receptor
CEJ55_11495	COG2382	esterase
CEJ55_11500	COG3251	PFAM MbtH domain protein
CEJ55_11505	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CEJ55_11505	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CEJ55_11510	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CEJ55_11515	COG1120	ATPase activity
CEJ55_11520	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CEJ55_11525	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CEJ55_11535	COG4592	Periplasmic binding protein
CEJ55_11540	COG1169	isochorismate synthase
CEJ55_11545	COG1021	2,3-dihydroxybenzoate-AMP ligase
CEJ55_11550	COG1535	isochorismatase
CEJ55_11550	COG3433	isochorismatase activity
CEJ55_11555	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_11560	COG2050	protein possibly involved in aromatic compounds catabolism
CEJ55_11565	COG1966	Carbon starvation protein
CEJ55_11570	COG2879	small protein
CEJ55_11575	COG0371	Dehydrogenase
CEJ55_11580	COG0436	Aminotransferase
CEJ55_11585	COG1475	DNA binding
CEJ55_11590	COG3969	phosphoadenosine phosphosulfate
CEJ55_11595	COG0583	DNA-binding transcription factor activity
CEJ55_11600	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CEJ55_11605	COG0450	alkyl hydroperoxide reductase
CEJ55_11610	COG3634	alkyl hydroperoxide reductase activity
CEJ55_11615	COG0589	response to stress
CEJ55_11620	COG1063	alcohol dehydrogenase
CEJ55_11630	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CEJ55_11640	COG3719	Belongs to the RNase T2 family
CEJ55_11645	COG0471	metal ion transport
CEJ55_11660	COG3051	citrate lyase alpha subunit
CEJ55_11665	COG2301	Belongs to the HpcH HpaI aldolase family
CEJ55_11675	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CEJ55_11680	COG3290	protein histidine kinase activity
CEJ55_11685	COG4565	transcriptional regulatory protein
CEJ55_11690	COG3069	C4-dicarboxylate transmembrane transporter activity
CEJ55_11705	COG1278	Cold shock
CEJ55_11715	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CEJ55_11720	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CEJ55_11735	COG0583	DNA-binding transcription factor activity
CEJ55_11755	COG1686	Belongs to the peptidase S11 family
CEJ55_11760	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CEJ55_11765	COG0772	Belongs to the SEDS family
CEJ55_11770	COG0768	penicillin binding
CEJ55_11780	COG0799	negative regulation of ribosome biogenesis
CEJ55_11785	COG0406	alpha-ribazole phosphatase activity
CEJ55_11795	COG1466	dna polymerase III delta subunit
CEJ55_11810	COG2888	peptidyl-tyrosine sulfation
CEJ55_11815	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEJ55_11825	COG2214	Heat shock protein DnaJ domain protein
CEJ55_11830	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEJ55_11840	COG2214	Heat shock protein DnaJ domain protein
CEJ55_11845	COG0443	Heat shock 70 kDa protein
CEJ55_11855	COG1126	abc transporter atp-binding protein
CEJ55_11860	COG0765	amino acid transport
CEJ55_11865	COG0765	amino acid transport
CEJ55_11870	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_11885	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CEJ55_11890	COG4535	Mg2 and Co2 transporter CorC
CEJ55_11900	COG1702	phosphate starvation-inducible protein PhoH
CEJ55_11910	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CEJ55_11955	COG0367	asparagine synthase
CEJ55_11965	COG0647	UMP catabolic process
CEJ55_11970	COG1846	Transcriptional regulator
CEJ55_11970	COG1940	carbohydrate kinase activity
CEJ55_11975	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CEJ55_11985	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_11985	COG2190	(PTS) system
CEJ55_11985	COG1263	PTS System
CEJ55_12010	COG0735	belongs to the Fur family
CEJ55_12020	COG0716	FMN binding
CEJ55_12030	COG0596	Alpha beta hydrolase
CEJ55_12035	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
CEJ55_12040	COG0033	Phosphoglucomutase
CEJ55_12045	COG0531	amino acid
CEJ55_12050	COG1982	Orn Lys Arg decarboxylase major
CEJ55_12060	COG0745	RESPONSE REGULATOR receiver
CEJ55_12065	COG2205	protein histidine kinase activity
CEJ55_12095	COG3209	COG3209 Rhs family protein
CEJ55_12125	COG3272	Protein of unknown function (DUF1722)
CEJ55_12130	COG0415	Belongs to the DNA photolyase family
CEJ55_12140	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CEJ55_12145	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CEJ55_12150	COG1984	allophanate hydrolase subunit 2
CEJ55_12165	COG3180	Ammonia monooxygenase
CEJ55_12170	COG3539	Fimbrial protein
CEJ55_12175	COG3121	Chaperone
CEJ55_12180	COG3188	usher protein
CEJ55_12185	COG3539	Fimbrial protein
CEJ55_12190	COG0372	Belongs to the citrate synthase family
CEJ55_12205	COG2009	succinate dehydrogenase
CEJ55_12210	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CEJ55_12215	COG1053	succinate dehydrogenase
CEJ55_12220	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CEJ55_12225	COG0567	Dehydrogenase, E1 component
CEJ55_12230	COG0508	dehydrogenase complex catalyzes the overall conversion of
CEJ55_12240	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CEJ55_12245	COG2188	Transcriptional regulator
CEJ55_12250	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_12250	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_12250	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_12255	COG0383	alpha-mannosidase activity
CEJ55_12265	COG1271	oxidase subunit
CEJ55_12270	COG1294	oxidase, subunit
CEJ55_12275	COG4890	Cyd operon protein YbgT
CEJ55_12280	COG3790	cyd operon protein YbgE
CEJ55_12285	COG0824	Thioesterase
CEJ55_12290	COG0811	peptide transport
CEJ55_12295	COG0848	biopolymer transport protein
CEJ55_12300	COG3064	Membrane
CEJ55_12310	COG2885	chlorophyll binding
CEJ55_12315	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CEJ55_12365	COG3201	nicotinamide mononucleotide transporter
CEJ55_12370	COG1230	cation diffusion facilitator family transporter
CEJ55_12385	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CEJ55_12395	COG2017	converts alpha-aldose to the beta-anomer
CEJ55_12405	COG1085	galactose-1-phosphate uridylyltransferase
CEJ55_12410	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CEJ55_12415	COG1119	ATPase activity
CEJ55_12420	COG2005	Transcriptional regulator
CEJ55_12420	COG3585	molybdate ion transport
CEJ55_12435	COG0725	ABC transporter, periplasmic molybdate-binding protein
CEJ55_12440	COG4149	molybdate abc transporter
CEJ55_12450	COG0561	phosphatase activity
CEJ55_12460	COG0583	DNA-binding transcription factor activity
CEJ55_12465	COG2828	Protein conserved in bacteria
CEJ55_12470	COG0471	metal ion transport
CEJ55_12475	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CEJ55_12480	COG4677	pectinesterase activity
CEJ55_12490	COG1881	PFAM PEBP family protein
CEJ55_12495	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CEJ55_12510	COG2226	methyltransferase
CEJ55_12515	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CEJ55_12525	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CEJ55_12535	COG0521	Mo-molybdopterin cofactor biosynthetic process
CEJ55_12545	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CEJ55_12550	COG0314	molybdopterin synthase activity
CEJ55_12555	COG0670	Belongs to the BI1 family
CEJ55_12565	COG0670	Belongs to the BI1 family
CEJ55_12570	COG0392	lysyltransferase activity
CEJ55_12575	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CEJ55_12580	COG3568	Endonuclease Exonuclease Phosphatase
CEJ55_12590	COG0842	Transport permease protein
CEJ55_12595	COG0842	Transport permease protein
CEJ55_12600	COG1131	(ABC) transporter
CEJ55_12610	COG1309	transcriptional regulator
CEJ55_12615	COG0513	Belongs to the DEAD box helicase family
CEJ55_12625	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_12630	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
CEJ55_12640	COG1199	ATP-dependent helicase activity
CEJ55_12645	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CEJ55_12650	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CEJ55_12660	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CEJ55_12670	COG4774	siderophore transport
CEJ55_12685	COG0668	transmembrane transport
CEJ55_12690	COG1126	abc transporter atp-binding protein
CEJ55_12695	COG0765	amino acid transport
CEJ55_12700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_12725	COG5006	permease, DMT superfamily
CEJ55_12730	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CEJ55_12735	COG2194	sulfuric ester hydrolase activity
CEJ55_12745	COG1321	iron dependent repressor
CEJ55_12750	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CEJ55_12755	COG1376	ErfK ybiS ycfS ynhG family protein
CEJ55_12760	COG0488	(ABC) transporter
CEJ55_12770	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_12780	COG0561	phosphatase activity
CEJ55_12795	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CEJ55_12800	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CEJ55_12805	COG0303	'Molybdopterin
CEJ55_12810	COG1446	asparaginase
CEJ55_12830	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CEJ55_12835	COG2200	EAL domain
CEJ55_12840	COG2199	diguanylate cyclase activity
CEJ55_12855	COG2133	pyrroloquinoline quinone binding
CEJ55_12860	COG0625	glutathione transferase activity
CEJ55_12865	COG1686	Belongs to the peptidase S11 family
CEJ55_12870	COG1349	DNA-binding transcription factor activity
CEJ55_12875	COG0671	phosphoesterase, PA-phosphatase related
CEJ55_12880	COG2814	Major facilitator Superfamily
CEJ55_12890	COG0561	phosphatase activity
CEJ55_12895	COG0738	Major facilitator superfamily
CEJ55_12900	COG3226	Transcriptional regulator
CEJ55_12915	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CEJ55_12925	COG0778	Nitroreductase
CEJ55_12945	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CEJ55_12950	COG3842	ATPase activity
CEJ55_12955	COG1176	ABC-type spermidine putrescine transport system, permease component I
CEJ55_12960	COG1177	transmembrane transport
CEJ55_12975	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_12980	COG4160	amino acid transport
CEJ55_12985	COG4215	(ABC) transporter
CEJ55_12990	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_12995	COG1126	abc transporter atp-binding protein
CEJ55_13010	COG3023	N-Acetylmuramoyl-L-alanine amidase
CEJ55_13015	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CEJ55_13020	COG0702	epimerase
CEJ55_13025	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CEJ55_13030	COG0028	Belongs to the TPP enzyme family
CEJ55_13035	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CEJ55_13045	COG2431	L-lysine efflux transmembrane transporter activity
CEJ55_13055	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CEJ55_13060	COG3593	DNA synthesis involved in DNA repair
CEJ55_13065	COG2990	Protein conserved in bacteria
CEJ55_13070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEJ55_13075	COG0577	efflux transmembrane transporter activity
CEJ55_13075	COG1136	(ABC) transporter
CEJ55_13080	COG1278	Cold shock
CEJ55_13090	COG0542	response to heat
CEJ55_13115	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CEJ55_13120	COG4988	ABC transporter
CEJ55_13125	COG0492	ferredoxin-NADP+ reductase activity
CEJ55_13135	COG1522	sequence-specific DNA binding
CEJ55_13150	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CEJ55_13160	COG0243	molybdopterin cofactor binding
CEJ55_13165	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_13170	COG3302	dmso reductase anchor subunit
CEJ55_13175	COG1335	isochorismatase
CEJ55_13185	COG0531	amino acid
CEJ55_13190	COG0583	DNA-binding transcription factor activity
CEJ55_13195	COG2249	NAD(P)H dehydrogenase (quinone) activity
CEJ55_13200	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CEJ55_13205	COG1882	Formate acetyltransferase
CEJ55_13210	COG2116	formate transmembrane transporter activity
CEJ55_13215	COG1944	ATP diphosphatase activity
CEJ55_13220	COG2323	membrane
CEJ55_13235	COG0501	Belongs to the peptidase M48B family
CEJ55_13245	COG0539	negative regulation of cytoplasmic translation
CEJ55_13255	COG0658	competence protein
CEJ55_13255	COG2333	competence protein COMEC
CEJ55_13260	COG1132	(ABC) transporter
CEJ55_13270	COG3214	Protein conserved in bacteria
CEJ55_13285	COG3173	Aminoglycoside phosphotransferase
CEJ55_13290	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CEJ55_13300	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CEJ55_13310	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CEJ55_13320	COG2989	Protein conserved in bacteria
CEJ55_13330	COG3108	Peptidase M15
CEJ55_13335	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CEJ55_13340	COG1448	Aminotransferase
CEJ55_13345	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CEJ55_13360	COG0308	aminopeptidase N
CEJ55_13370	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CEJ55_13380	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CEJ55_13385	COG0431	NADPH-dependent FMN reductase
CEJ55_13395	COG3539	Fimbrial protein
CEJ55_13400	COG3121	Chaperone
CEJ55_13405	COG3188	usher protein
CEJ55_13410	COG3539	Fimbrial protein
CEJ55_13415	COG3539	Fimbrial protein
CEJ55_13420	COG3539	Fimbrial protein
CEJ55_13425	COG3121	Chaperone
CEJ55_13440	COG3217	Mosc domain protein beta barrel domain protein
CEJ55_13440	COG0633	Ferredoxin
CEJ55_13450	COG0488	(ABC) transporter
CEJ55_13455	COG2995	paraquat-inducible protein a
CEJ55_13460	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CEJ55_13460	COG3008	intermembrane lipid transfer
CEJ55_13465	COG3009	Protein conserved in bacteria
CEJ55_13470	COG3130	regulation of translation
CEJ55_13480	COG1067	ATP-dependent peptidase activity
CEJ55_13505	COG3070	regulator of competence-specific genes
CEJ55_13510	COG1289	transmembrane transporter activity
CEJ55_13515	COG3304	Inner membrane component domain
CEJ55_13520	COG0210	DNA helicase
CEJ55_13535	COG1832	CoA-binding protein
CEJ55_13550	COG1254	Belongs to the acylphosphatase family
CEJ55_13555	COG2920	part of a sulfur-relay system
CEJ55_13560	COG0670	Belongs to the BI1 family
CEJ55_13570	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CEJ55_13575	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CEJ55_13580	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CEJ55_13585	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CEJ55_13590	COG1999	signal sequence binding
CEJ55_13595	COG1773	rubredoxin
CEJ55_13600	COG1271	oxidase subunit
CEJ55_13605	COG1294	oxidase, subunit
CEJ55_13620	COG3206	protein involved in exopolysaccharide biosynthesis
CEJ55_13620	COG0489	protein tyrosine kinase activity
CEJ55_13625	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CEJ55_13630	COG1596	polysaccharide export
CEJ55_13635	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEJ55_13655	COG1278	Cold shock
CEJ55_13660	COG1278	Cold shock
CEJ55_13680	COG0348	domain, Protein
CEJ55_13685	COG2205	protein histidine kinase activity
CEJ55_13685	COG0784	Response regulator, receiver
CEJ55_13685	COG2198	Histidine kinase
CEJ55_13690	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_13695	COG0745	RESPONSE REGULATOR receiver
CEJ55_13700	COG3005	denitrification pathway
CEJ55_13750	COG3729	General stress protein
CEJ55_13755	COG2233	PERMEase
CEJ55_13790	COG1309	transcriptional regulator
CEJ55_13795	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CEJ55_13795	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CEJ55_13795	COG0506	proline dehydrogenase activity
CEJ55_13810	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CEJ55_13825	COG0672	)-iron permease
CEJ55_13830	COG2822	iron ion transport
CEJ55_13835	COG2837	iron assimilation
CEJ55_13845	COG1702	phosphate starvation-inducible protein PhoH
CEJ55_13850	COG3658	cytochrome
CEJ55_13855	COG1215	transferase activity, transferring glycosyl groups
CEJ55_13860	COG1649	PFAM Uncharacterised BCR, COG1649
CEJ55_13860	COG0726	polysaccharide deacetylase
CEJ55_13865	COG0457	Tetratricopeptide repeat
CEJ55_13870	COG3706	GGDEF domain
CEJ55_13905	COG3381	protein complex oligomerization
CEJ55_13915	COG1462	curli production assembly transport component CsgG
CEJ55_13930	COG2197	response regulator
CEJ55_13965	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CEJ55_13970	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CEJ55_13995	COG2943	transferase activity, transferring hexosyl groups
CEJ55_14000	COG5645	(Lipo)protein
CEJ55_14015	COG1560	Kdo2-lipid A biosynthetic process
CEJ55_14025	COG2353	YceI-like domain
CEJ55_14030	COG3038	cytochrome b561
CEJ55_14065	COG2999	glutathione oxidoreductase activity
CEJ55_14075	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CEJ55_14085	COG0673	inositol 2-dehydrogenase activity
CEJ55_14090	COG0728	peptidoglycan biosynthetic process
CEJ55_14095	COG3418	PFAM FlgN family protein
CEJ55_14100	COG2747	anti-sigma28 factor FlgM
CEJ55_14105	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
CEJ55_14110	COG1815	bacterial-type flagellum-dependent cell motility
CEJ55_14115	COG1558	bacterial-type flagellum-dependent cell motility
CEJ55_14120	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CEJ55_14125	COG1749	Flagellar hook protein flgE
CEJ55_14130	COG4787	bacterial-type flagellum-dependent cell motility
CEJ55_14135	COG4786	Flagellar basal body rod
CEJ55_14150	COG1705	Flagellar rod assembly protein muramidase FlgJ
CEJ55_14150	COG3951	Flagellar rod assembly protein muramidase FlgJ
CEJ55_14155	COG1256	bacterial-type flagellum assembly
CEJ55_14160	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CEJ55_14165	COG1530	ribonuclease E activity
CEJ55_14175	COG0564	pseudouridine synthase activity
CEJ55_14185	COG1399	metal-binding, possibly nucleic acid-binding protein
CEJ55_14205	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CEJ55_14210	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_14220	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CEJ55_14225	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CEJ55_14230	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CEJ55_14240	COG0470	DNA polymerase III
CEJ55_14245	COG0084	hydrolase, TatD family'
CEJ55_14250	COG1263	PTS System
CEJ55_14250	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_14255	COG4773	Receptor
CEJ55_14260	COG0537	adenosine 5'-monophosphoramidase activity
CEJ55_14265	COG5633	Lipoprotein
CEJ55_14270	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
CEJ55_14290	COG1252	NADH dehydrogenase
CEJ55_14300	COG3134	Outer membrane lipoprotein
CEJ55_14305	COG1309	transcriptional regulator
CEJ55_14315	COG1388	LysM domain
CEJ55_14315	COG1376	ErfK ybiS ycfS ynhG family protein
CEJ55_14320	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CEJ55_14325	COG4763	Acyl-transferase
CEJ55_14330	COG4591	ABC-type transport system involved in lipoprotein release permease component
CEJ55_14335	COG1136	(ABC) transporter
CEJ55_14340	COG4591	ABC-type transport system involved in lipoprotein release permease component
CEJ55_14350	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CEJ55_14355	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CEJ55_14365	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CEJ55_14370	COG1177	transmembrane transport
CEJ55_14375	COG1176	ABC-type spermidine putrescine transport system, permease component I
CEJ55_14380	COG3842	ATPase activity
CEJ55_14395	COG2850	peptidyl-arginine hydroxylation
CEJ55_14400	COG2205	protein histidine kinase activity
CEJ55_14405	COG0745	RESPONSE REGULATOR receiver
CEJ55_14410	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CEJ55_14430	COG1187	pseudouridine synthase activity
CEJ55_14435	COG0538	isocitrate dehydrogenase activity
CEJ55_14445	COG5562	phage envelope protein
CEJ55_14450	COG0789	Transcriptional regulator
CEJ55_14455	COG2200	EAL domain
CEJ55_14480	COG2200	EAL domain
CEJ55_14540	COG2894	cell division
CEJ55_14575	COG0179	Fumarylacetoacetate (FAA) hydrolase
CEJ55_14590	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CEJ55_14595	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CEJ55_14600	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CEJ55_14615	COG2719	SpoVR family
CEJ55_14625	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CEJ55_14635	COG1619	proteins homologs of microcin C7 resistance protein MccF
CEJ55_14650	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
CEJ55_14675	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CEJ55_14675	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
CEJ55_14675	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_14680	COG1461	Dihydroxyacetone kinase
CEJ55_14685	COG2376	Dihydroxyacetone kinase
CEJ55_14690	COG3284	Transcriptional regulator
CEJ55_14695	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_14710	COG0012	GTP binding
CEJ55_14725	COG0659	secondary active sulfate transmembrane transporter activity
CEJ55_14730	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CEJ55_14755	COG2890	protein-(glutamine-N5) methyltransferase activity
CEJ55_14760	COG3094	Invasion gene expression up-regulator, SirB
CEJ55_14765	COG2912	Transglutaminase-like superfamily
CEJ55_14800	COG0387	Pfam Sodium calcium exchanger
CEJ55_14805	COG4572	Cation transport regulator
CEJ55_14810	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CEJ55_14815	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CEJ55_14820	COG4932	domain protein
CEJ55_14825	COG2197	response regulator
CEJ55_14830	COG3850	Histidine kinase
CEJ55_14840	COG2223	nitrite transmembrane transporter activity
CEJ55_14845	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CEJ55_14850	COG1140	nitrate reductase beta subunit
CEJ55_14855	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CEJ55_14860	COG2181	nitrate reductase activity
CEJ55_14880	COG0788	formyltetrahydrofolate deformylase activity
CEJ55_14890	COG1752	Esterase of the alpha-beta hydrolase superfamily
CEJ55_14895	COG0745	RESPONSE REGULATOR receiver
CEJ55_14900	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CEJ55_14905	COG2916	Histone family protein nucleoid-structuring protein H-NS
CEJ55_14910	COG1435	thymidine kinase activity
CEJ55_14915	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_14915	COG1454	alcohol dehydrogenase
CEJ55_14920	COG2095	MarC family integral membrane protein
CEJ55_14930	COG4166	transmembrane transport
CEJ55_14935	COG0601	transmembrane transport
CEJ55_14940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CEJ55_14945	COG0444	Belongs to the ABC transporter superfamily
CEJ55_14950	COG4608	Belongs to the ABC transporter superfamily
CEJ55_14970	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CEJ55_14975	COG2350	Protein conserved in bacteria
CEJ55_14980	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CEJ55_14985	COG1607	acyl-coa hydrolase
CEJ55_15010	COG3685	Protein conserved in bacteria
CEJ55_15015	COG3685	Protein conserved in bacteria
CEJ55_15020	COG3729	General stress protein
CEJ55_15035	COG0134	indole-3-glycerol-phosphate synthase activity
CEJ55_15035	COG0135	phosphoribosylanthranilate isomerase activity
CEJ55_15040	COG0512	Glutamine amidotransferase of anthranilate synthase
CEJ55_15040	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CEJ55_15045	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CEJ55_15055	COG0613	PHP domain protein
CEJ55_15060	COG0009	L-threonylcarbamoyladenylate synthase
CEJ55_15065	COG1187	pseudouridine synthase activity
CEJ55_15070	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
CEJ55_15075	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_15080	COG0616	signal peptide processing
CEJ55_15095	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CEJ55_15105	COG0583	DNA-binding transcription factor activity
CEJ55_15125	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CEJ55_15135	COG0671	phosphoesterase, PA-phosphatase related
CEJ55_15140	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CEJ55_15145	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CEJ55_15155	COG0023	Translation Initiation Factor
CEJ55_15165	COG1349	DNA-binding transcription factor activity
CEJ55_15175	COG5001	Diguanylate cyclase
CEJ55_15190	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CEJ55_15190	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CEJ55_15195	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CEJ55_15200	COG2852	Protein conserved in bacteria
CEJ55_15205	COG4172	Belongs to the ABC transporter superfamily
CEJ55_15210	COG4172	Belongs to the ABC transporter superfamily
CEJ55_15215	COG4171	peptide transport system, permease
CEJ55_15220	COG4168	peptide transport system, permease
CEJ55_15225	COG4166	transmembrane transport
CEJ55_15240	COG0531	amino acid
CEJ55_15245	COG0174	glutamine synthetase
CEJ55_15250	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CEJ55_15255	COG1917	Cupin 2, conserved barrel domain protein
CEJ55_15255	COG1396	sequence-specific DNA binding
CEJ55_15260	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_15265	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CEJ55_15270	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CEJ55_15275	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CEJ55_15280	COG1842	Phage shock protein A
CEJ55_15290	COG1983	PspC domain protein
CEJ55_15300	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CEJ55_15305	COG0366	Alpha amylase catalytic
CEJ55_15310	COG1653	transport
CEJ55_15315	COG1175	transmembrane transport
CEJ55_15320	COG0395	ABC-type sugar transport system, permease component
CEJ55_15325	COG1063	alcohol dehydrogenase
CEJ55_15330	COG1082	Xylose isomerase domain protein TIM barrel
CEJ55_15335	COG0673	inositol 2-dehydrogenase activity
CEJ55_15345	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CEJ55_15350	COG3842	ATPase activity
CEJ55_15360	COG1609	Transcriptional regulator
CEJ55_15365	COG3106	COG3106 Predicted ATPase
CEJ55_15375	COG3283	Transcriptional regulator of aromatic amino acids metabolism
CEJ55_15380	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CEJ55_15385	COG4948	Mandelate Racemase Muconate Lactonizing
CEJ55_15390	COG2866	Carboxypeptidase
CEJ55_15395	COG0702	epimerase
CEJ55_15400	COG1073	alpha beta
CEJ55_15405	COG0583	DNA-binding transcription factor activity
CEJ55_15410	COG4166	transmembrane transport
CEJ55_15415	COG0668	transmembrane transport
CEJ55_15420	COG3182	Iron-regulated membrane protein
CEJ55_15425	COG0589	response to stress
CEJ55_15430	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CEJ55_15435	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CEJ55_15440	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CEJ55_15450	COG1473	amidohydrolase
CEJ55_15455	COG1473	amidohydrolase
CEJ55_15460	COG0583	DNA-binding transcription factor activity
CEJ55_15465	COG2840	Smr protein MutS2
CEJ55_15470	COG3706	GGDEF domain
CEJ55_15485	COG0513	Belongs to the DEAD box helicase family
CEJ55_15490	COG0037	tRNA processing
CEJ55_15495	COG0582	viral genome integration into host DNA
CEJ55_15515	COG3723	Recombinational DNA repair protein, rece pathway
CEJ55_15520	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CEJ55_15565	COG4197	protein conserved in bacteria, prophage-related
CEJ55_15575	COG3756	Protein conserved in bacteria
CEJ55_15580	COG1484	DNA-dependent DNA replication
CEJ55_15640	COG3064	Membrane
CEJ55_15655	COG3772	lysozyme
CEJ55_15670	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CEJ55_15680	COG1475	DNA binding
CEJ55_15765	COG1196	nuclear chromosome segregation
CEJ55_15800	COG5301	cellulose 1,4-beta-cellobiosidase activity
CEJ55_15805	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CEJ55_15810	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CEJ55_15820	COG0589	response to stress
CEJ55_15825	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CEJ55_15835	COG0674	pyruvate-flavodoxin oxidoreductase activity
CEJ55_15835	COG1013	pyruvate-flavodoxin oxidoreductase activity
CEJ55_15835	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEJ55_15835	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CEJ55_15840	COG3042	response to heat
CEJ55_15845	COG3187	Heat shock protein
CEJ55_15850	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CEJ55_15855	COG2911	Protein conserved in bacteria
CEJ55_15865	COG3784	Protein of unknown function (DUF1318)
CEJ55_15870	COG2207	Transcriptional regulator
CEJ55_15875	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_15880	COG3733	amine oxidase
CEJ55_15885	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_15885	COG2030	dehydratase
CEJ55_15890	COG3396	Phenylacetate-CoA oxygenase
CEJ55_15895	COG3460	Phenylacetate-CoA oxygenase
CEJ55_15900	COG3396	Phenylacetate-CoA oxygenase
CEJ55_15905	COG2151	metal-sulfur cluster biosynthetic enzyme
CEJ55_15910	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CEJ55_15915	COG1024	Enoyl-CoA hydratase
CEJ55_15920	COG1024	Enoyl-CoA hydratase
CEJ55_15925	COG1250	3-hydroxyacyl-CoA dehydrogenase
CEJ55_15930	COG2050	protein possibly involved in aromatic compounds catabolism
CEJ55_15935	COG0183	Belongs to the thiolase family
CEJ55_15940	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
CEJ55_15945	COG3327	negative regulation of DNA-templated transcription, initiation
CEJ55_15950	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CEJ55_15955	COG0667	Aldo Keto reductase
CEJ55_15965	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CEJ55_15970	COG4589	Belongs to the CDS family
CEJ55_15975	COG2267	carboxylic ester hydrolase activity
CEJ55_15980	COG2453	phosphatase
CEJ55_15980	COG0671	phosphoesterase, PA-phosphatase related
CEJ55_15990	COG1643	Atp-dependent helicase
CEJ55_15995	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CEJ55_16000	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_16005	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CEJ55_16010	COG3038	cytochrome b561
CEJ55_16025	COG0840	transmembrane signaling receptor activity
CEJ55_16030	COG0583	DNA-binding transcription factor activity
CEJ55_16035	COG5383	Protein conserved in bacteria
CEJ55_16055	COG2841	Protein conserved in bacteria
CEJ55_16060	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CEJ55_16065	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CEJ55_16070	COG1275	C4-dicarboxylate transporter malic acid transport protein
CEJ55_16075	COG0500	methyltransferase
CEJ55_16090	COG0675	Transposase, IS605 OrfB family
CEJ55_16095	COG3135	benzoate transporter
CEJ55_16100	COG1396	sequence-specific DNA binding
CEJ55_16105	COG0826	peptidase U32
CEJ55_16115	COG1724	mRNA binding
CEJ55_16120	COG1598	PFAM Uncharacterised protein family UPF0150
CEJ55_16125	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CEJ55_16130	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CEJ55_16135	COG3842	ATPase activity
CEJ55_16140	COG1176	ABC-type spermidine putrescine transport system, permease component I
CEJ55_16145	COG1177	transmembrane transport
CEJ55_16175	COG3238	Protein conserved in bacteria
CEJ55_16180	COG1247	-acetyltransferase
CEJ55_16190	COG2130	NADP-dependent
CEJ55_16195	COG1802	Transcriptional regulator
CEJ55_16200	COG4772	TonB-dependent receptor
CEJ55_16215	COG3391	amine dehydrogenase activity
CEJ55_16220	COG1113	amino acid transport
CEJ55_16225	COG0625	glutathione transferase activity
CEJ55_16250	COG3209	COG3209 Rhs family protein
CEJ55_16285	COG3209	COG3209 Rhs family protein
CEJ55_16290	COG3209	COG3209 Rhs family protein
CEJ55_16310	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CEJ55_16315	COG2162	N-hydroxyarylamine O-acetyltransferase activity
CEJ55_16320	COG0384	phenazine biosynthesis protein PhzF
CEJ55_16325	COG2181	nitrate reductase activity
CEJ55_16330	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CEJ55_16335	COG1140	nitrate reductase beta subunit
CEJ55_16340	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CEJ55_16345	COG2223	nitrite transmembrane transporter activity
CEJ55_16350	COG4886	Leucine-rich repeat (LRR) protein
CEJ55_16355	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CEJ55_16360	COG0697	spore germination
CEJ55_16365	COG3383	formate dehydrogenase (NAD+) activity
CEJ55_16365	COG0243	molybdopterin cofactor binding
CEJ55_16370	COG0243	molybdopterin cofactor binding
CEJ55_16370	COG3383	formate dehydrogenase (NAD+) activity
CEJ55_16375	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_16380	COG2864	formate dehydrogenase
CEJ55_16385	COG3093	addiction module antidote protein HigA
CEJ55_16390	COG1064	alcohol dehydrogenase
CEJ55_16415	COG1764	response to oxidative stress
CEJ55_16420	COG4608	Belongs to the ABC transporter superfamily
CEJ55_16425	COG0444	Belongs to the ABC transporter superfamily
CEJ55_16430	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CEJ55_16435	COG0601	transmembrane transport
CEJ55_16440	COG0747	negative chemotaxis
CEJ55_16445	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
CEJ55_16450	COG2202	Pas domain
CEJ55_16450	COG2200	EAL domain
CEJ55_16450	COG2199	diguanylate cyclase activity
CEJ55_16465	COG0531	amino acid
CEJ55_16470	COG0076	glutamate decarboxylase activity
CEJ55_16475	COG0612	Peptidase, M16
CEJ55_16480	COG4771	TonB-dependent receptor
CEJ55_16485	COG4178	(ABC) transporter
CEJ55_16490	COG0641	radical SAM
CEJ55_16495	COG3119	arylsulfatase activity
CEJ55_16500	COG2207	Transcriptional regulator
CEJ55_16510	COG0243	molybdopterin cofactor binding
CEJ55_16515	COG3539	Fimbrial protein
CEJ55_16520	COG3539	Fimbrial protein
CEJ55_16525	COG3539	Fimbrial protein
CEJ55_16530	COG3188	usher protein
CEJ55_16535	COG3121	Chaperone
CEJ55_16540	COG3539	Fimbrial protein
CEJ55_16560	COG3550	peptidyl-serine autophosphorylation
CEJ55_16565	COG1396	sequence-specific DNA binding
CEJ55_16570	COG2911	Protein conserved in bacteria
CEJ55_16570	COG3210	domain, Protein
CEJ55_16580	COG2390	Transcriptional regulator
CEJ55_16600	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_16610	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CEJ55_16620	COG3781	membrane
CEJ55_16640	COG2199	diguanylate cyclase activity
CEJ55_16655	COG2066	Belongs to the glutaminase family
CEJ55_16660	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_16665	COG0583	DNA-binding transcription factor activity
CEJ55_16685	COG1846	Transcriptional regulator
CEJ55_16690	COG4977	sequence-specific DNA binding
CEJ55_16700	COG2723	6-phospho-beta-galactosidase activity
CEJ55_16710	COG1447	Phosphotransferase system cellobiose-specific component IIA
CEJ55_16715	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CEJ55_16725	COG2188	Transcriptional regulator
CEJ55_16730	COG0697	spore germination
CEJ55_16735	COG2814	Major facilitator Superfamily
CEJ55_16745	COG3706	GGDEF domain
CEJ55_16750	COG3111	PFAM Bacterial OB fold (BOF) protein
CEJ55_16755	COG1546	Belongs to the CinA family
CEJ55_16765	COG0339	signal peptide processing
CEJ55_16775	COG4221	oxidoreductase activity
CEJ55_16780	COG1802	Transcriptional regulator
CEJ55_16790	COG0246	Mannitol dehydrogenase
CEJ55_16795	COG0477	Major facilitator Superfamily
CEJ55_16800	COG1063	alcohol dehydrogenase
CEJ55_16805	COG4948	Mandelate Racemase Muconate Lactonizing
CEJ55_16825	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CEJ55_16840	COG0243	molybdopterin cofactor binding
CEJ55_16845	COG0243	molybdopterin cofactor binding
CEJ55_16850	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_16855	COG3302	dmso reductase anchor subunit
CEJ55_16860	COG3381	protein complex oligomerization
CEJ55_16865	COG0038	chloride channel
CEJ55_16870	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CEJ55_16875	COG1940	carbohydrate kinase activity
CEJ55_16880	COG0583	DNA-binding transcription factor activity
CEJ55_16885	COG2814	Major facilitator Superfamily
CEJ55_16905	COG3591	Belongs to the peptidase S1B family
CEJ55_16925	COG0628	permease
CEJ55_16930	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CEJ55_16935	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CEJ55_16950	COG0531	amino acid
CEJ55_16960	COG3136	membrane protein required for alginate biosynthesis
CEJ55_16965	COG0745	RESPONSE REGULATOR receiver
CEJ55_16970	COG2205	protein histidine kinase activity
CEJ55_16980	COG0114	fumarate hydratase activity
CEJ55_16985	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CEJ55_16985	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CEJ55_16990	COG1482	cell wall glycoprotein biosynthetic process
CEJ55_16995	COG5339	Protein conserved in bacteria
CEJ55_17010	COG3250	beta-galactosidase activity
CEJ55_17015	COG1309	transcriptional regulator
CEJ55_17020	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_17025	COG1609	Transcriptional regulator
CEJ55_17030	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_17030	COG1263	PTS System
CEJ55_17035	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CEJ55_17045	COG0673	inositol 2-dehydrogenase activity
CEJ55_17090	COG4659	FMN binding
CEJ55_17100	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CEJ55_17110	COG3104	oligopeptide transport
CEJ55_17115	COG0625	glutathione transferase activity
CEJ55_17120	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CEJ55_17135	COG3895	Periplasmic Protein
CEJ55_17145	COG3133	Outer membrane lipoprotein
CEJ55_17160	COG1566	PFAM secretion protein HlyD family protein
CEJ55_17165	COG1289	transmembrane transporter activity
CEJ55_17170	COG2032	superoxide dismutase activity
CEJ55_17175	COG4989	oxidoreductase activity
CEJ55_17180	COG3313	Fe-S protein
CEJ55_17185	COG1309	transcriptional regulator
CEJ55_17190	COG1902	pentaerythritol trinitrate reductase activity
CEJ55_17195	COG0346	lactoylglutathione lyase activity
CEJ55_17205	COG1201	RNA secondary structure unwinding
CEJ55_17210	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CEJ55_17215	COG0791	NLP P60 protein
CEJ55_17220	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CEJ55_17225	COG2814	Major facilitator Superfamily
CEJ55_17245	COG0583	DNA-binding transcription factor activity
CEJ55_17250	COG2814	Major facilitator Superfamily
CEJ55_17255	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CEJ55_17260	COG0307	riboflavin synthase, alpha
CEJ55_17270	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_17290	COG4529	Protein conserved in bacteria
CEJ55_17300	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
CEJ55_17305	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_17315	COG2414	aldehyde ferredoxin oxidoreductase
CEJ55_17320	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_17330	COG0469	pyruvate kinase activity
CEJ55_17335	COG4238	major outer membrane lipoprotein
CEJ55_17340	COG1376	ErfK ybiS ycfS ynhG family protein
CEJ55_17355	COG0719	Fe-S assembly protein
CEJ55_17360	COG0396	ATPase activity
CEJ55_17365	COG0719	Fe-S assembly protein
CEJ55_17370	COG0316	Belongs to the HesB IscA family
CEJ55_17380	COG2050	protein possibly involved in aromatic compounds catabolism
CEJ55_17385	COG0277	FAD linked oxidase domain protein
CEJ55_17385	COG0247	lactate metabolic process
CEJ55_17395	COG0628	permease
CEJ55_17410	COG0738	Major facilitator superfamily
CEJ55_17415	COG2271	Major facilitator Superfamily
CEJ55_17430	COG4670	ketone body catabolic process
CEJ55_17435	COG1960	acyl-CoA dehydrogenase activity
CEJ55_17440	COG1917	Cupin 2, conserved barrel domain protein
CEJ55_17440	COG2207	Transcriptional regulator
CEJ55_17450	COG2086	electron transfer activity
CEJ55_17455	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CEJ55_17460	COG0644	oxidoreductase
CEJ55_17465	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CEJ55_17470	COG0318	PFAM AMP-dependent synthetase and ligase
CEJ55_17475	COG0574	Belongs to the PEP-utilizing enzyme family
CEJ55_17475	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CEJ55_17490	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CEJ55_17495	COG4256	Hemin uptake protein
CEJ55_17505	COG2200	EAL domain
CEJ55_17510	COG0791	NLP P60 protein
CEJ55_17520	COG0386	Belongs to the glutathione peroxidase family
CEJ55_17580	COG3137	Salt-induced outer membrane protein
CEJ55_17585	COG1105	Belongs to the carbohydrate kinase PfkB family
CEJ55_17605	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CEJ55_17610	COG1988	membrane-bound metal-dependent
CEJ55_17635	COG0753	catalase activity
CEJ55_17645	COG1486	melibiose metabolic process
CEJ55_17650	COG1917	Cupin 2, conserved barrel domain protein
CEJ55_17650	COG2169	Transcriptional regulator
CEJ55_17655	COG1447	Phosphotransferase system cellobiose-specific component IIA
CEJ55_17660	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CEJ55_17665	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CEJ55_17675	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEJ55_17685	COG0322	excinuclease ABC activity
CEJ55_17695	COG3678	ATP-independent chaperone mediated protein folding
CEJ55_17730	COG0708	Exodeoxyribonuclease III
CEJ55_17735	COG0398	Pfam SNARE associated Golgi protein
CEJ55_17745	COG0398	Pfam SNARE associated Golgi protein
CEJ55_17750	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CEJ55_17755	COG4134	Bacterial extracellular solute-binding protein
CEJ55_17760	COG4135	transport system, permease component
CEJ55_17765	COG4136	ATPase activity
CEJ55_17770	COG2897	thiosulfate sulfurtransferase activity
CEJ55_17775	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CEJ55_17780	COG0494	nUDIX hydrolase
CEJ55_17790	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CEJ55_17800	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CEJ55_17815	COG0778	Nitroreductase
CEJ55_17825	COG0616	signal peptide processing
CEJ55_17830	COG0252	asparaginase activity
CEJ55_17835	COG1335	isochorismatase
CEJ55_17840	COG2814	Major facilitator Superfamily
CEJ55_17845	COG1349	DNA-binding transcription factor activity
CEJ55_17850	COG0667	Aldo Keto reductase
CEJ55_17855	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_17860	COG0191	fructose-bisphosphate aldolase activity
CEJ55_17865	COG1063	alcohol dehydrogenase
CEJ55_17870	COG2271	Major facilitator Superfamily
CEJ55_17875	COG1063	alcohol dehydrogenase
CEJ55_17880	COG3139	Protein of unknown function (DUF1315)
CEJ55_17890	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CEJ55_17895	COG0676	glucose-6-phosphate 1-epimerase activity
CEJ55_17900	COG0656	L-ascorbic acid biosynthetic process
CEJ55_17905	COG3713	MltA-interacting MipA family protein
CEJ55_17910	COG2766	serine protein kinase
CEJ55_17920	COG2199	diguanylate cyclase activity
CEJ55_17925	COG2199	diguanylate cyclase activity
CEJ55_17930	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CEJ55_17945	COG2207	Transcriptional regulator
CEJ55_17950	COG2807	transmembrane transport
CEJ55_17955	COG3189	MarR family transcriptional regulator
CEJ55_17960	COG3042	response to heat
CEJ55_17965	COG2203	Gaf domain
CEJ55_17965	COG2199	diguanylate cyclase activity
CEJ55_17980	COG2261	transglycosylase associated protein
CEJ55_17985	COG0675	Transposase, IS605 OrfB family
CEJ55_17990	COG1943	Transposase
CEJ55_18000	COG3615	Tellurite resistance protein tehB
CEJ55_18010	COG0583	DNA-binding transcription factor activity
CEJ55_18015	COG0473	3-isopropylmalate dehydrogenase activity
CEJ55_18020	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CEJ55_18025	COG4638	Rieske (2fe-2S)
CEJ55_18030	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CEJ55_18035	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CEJ55_18040	COG0318	PFAM AMP-dependent synthetase and ligase
CEJ55_18045	COG3065	identical protein binding
CEJ55_18050	COG1214	PFAM Peptidase M22, glycoprotease
CEJ55_18055	COG1199	ATP-dependent helicase activity
CEJ55_18060	COG0251	oxidation-reduction process
CEJ55_18075	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CEJ55_18085	COG1760	l-serine dehydratase
CEJ55_18090	COG2200	EAL domain
CEJ55_18095	COG1253	flavin adenine dinucleotide binding
CEJ55_18110	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_18110	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_18115	COG3715	PTS system
CEJ55_18120	COG3716	PTS system mannose fructose sorbose family IID component
CEJ55_18140	COG2226	methyltransferase
CEJ55_18145	COG1278	Cold shock
CEJ55_18175	COG1414	Transcriptional regulator
CEJ55_18180	COG2814	Major facilitator Superfamily
CEJ55_18190	COG0793	Belongs to the peptidase S41A family
CEJ55_18200	COG1956	GAF domain-containing protein
CEJ55_18205	COG2995	paraquat-inducible protein a
CEJ55_18210	COG3008	intermembrane lipid transfer
CEJ55_18230	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CEJ55_18240	COG1276	copper resistance
CEJ55_18245	COG2372	response to copper ion
CEJ55_18255	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CEJ55_18260	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CEJ55_18265	COG1770	oligopeptidase
CEJ55_18275	COG2979	Protein of unknown function (DUF533)
CEJ55_18285	COG3141	response to X-ray
CEJ55_18295	COG0800	Aldolase
CEJ55_18300	COG0129	dihydroxy-acid dehydratase activity
CEJ55_18305	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CEJ55_18310	COG1737	Transcriptional regulator
CEJ55_18315	COG0469	pyruvate kinase activity
CEJ55_18320	COG1560	Kdo2-lipid A biosynthetic process
CEJ55_18325	COG0739	heme binding
CEJ55_18330	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CEJ55_18335	COG1121	(ABC) transporter
CEJ55_18340	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CEJ55_18370	COG0217	transcriptional regulatory protein
CEJ55_18375	COG0494	nUDIX hydrolase
CEJ55_18385	COG1335	isochorismatase
CEJ55_18390	COG1801	Protein of unknown function DUF72
CEJ55_18395	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CEJ55_18410	COG0243	molybdopterin cofactor binding
CEJ55_18415	COG3005	denitrification pathway
CEJ55_18425	COG3102	Protein conserved in bacteria
CEJ55_18440	COG3755	Protein conserved in bacteria
CEJ55_18450	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CEJ55_18455	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CEJ55_18460	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CEJ55_18465	COG0745	RESPONSE REGULATOR receiver
CEJ55_18470	COG2201	protein-glutamate methylesterase activity
CEJ55_18475	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CEJ55_18480	COG0840	transmembrane signaling receptor activity
CEJ55_18485	COG0840	transmembrane signaling receptor activity
CEJ55_18490	COG0835	chemotaxis
CEJ55_18495	COG2198	Histidine kinase
CEJ55_18495	COG0643	Histidine kinase
CEJ55_18500	COG1360	Flagellar Motor Protein
CEJ55_18505	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CEJ55_18520	COG0589	response to stress
CEJ55_18530	COG1877	trehalose-phosphatase activity
CEJ55_18535	COG1172	Belongs to the binding-protein-dependent transport system permease family
CEJ55_18540	COG1129	ABC transporter
CEJ55_18545	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_18555	COG1528	Iron-storage protein
CEJ55_18575	COG1528	Iron-storage protein
CEJ55_18585	COG0814	amino acid
CEJ55_18590	COG3318	Belongs to the UPF0149 family
CEJ55_18590	COG3012	SEC-C Motif Domain Protein
CEJ55_18610	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CEJ55_18620	COG2197	response regulator
CEJ55_18630	COG2197	response regulator
CEJ55_18660	COG1191	sigma factor activity
CEJ55_18670	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CEJ55_18675	COG1516	flagellar protein fliS
CEJ55_18685	COG0366	Alpha amylase catalytic
CEJ55_18700	COG2391	methyltransferase activity
CEJ55_18705	COG0425	Belongs to the sulfur carrier protein TusA family
CEJ55_18710	COG2135	peptidase activity
CEJ55_18725	COG1766	The M ring may be actively involved in energy transduction
CEJ55_18730	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEJ55_18735	COG1317	bacterial-type flagellum organization
CEJ55_18740	COG1157	protein secretion by the type III secretion system
CEJ55_18745	COG2882	bacterial-type flagellum organization
CEJ55_18750	COG3144	bacterial-type flagellum assembly
CEJ55_18755	COG1580	Controls the rotational direction of flagella during chemotaxis
CEJ55_18760	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEJ55_18765	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEJ55_18770	COG3190	flagellar
CEJ55_18775	COG1338	Plays a role in the flagellum-specific transport system
CEJ55_18780	COG1987	bacterial-type flagellum assembly
CEJ55_18785	COG1684	flagellar biosynthetic protein fliR
CEJ55_18790	COG2197	response regulator
CEJ55_18825	COG5475	Uncharacterized small protein (DUF2158)
CEJ55_18830	COG2354	Protein conserved in bacteria
CEJ55_18835	COG0697	spore germination
CEJ55_18840	COG3727	T/G mismatch-specific endonuclease activity
CEJ55_18845	COG0270	DNA (cytosine-5-)-methyltransferase activity
CEJ55_18850	COG1418	mRNA catabolic process
CEJ55_18860	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CEJ55_18875	COG2205	protein histidine kinase activity
CEJ55_18880	COG0745	RESPONSE REGULATOR receiver
CEJ55_18885	COG2351	hydroxyisourate hydrolase activity
CEJ55_18900	COG3443	Belongs to the bacterial solute-binding protein 9 family
CEJ55_18905	COG3038	cytochrome b561
CEJ55_19015	COG0616	signal peptide processing
CEJ55_19155	COG0305	Participates in initiation and elongation during chromosome replication
CEJ55_19250	COG0477	Major facilitator Superfamily
CEJ55_19255	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CEJ55_19275	COG0534	Mate efflux family protein
CEJ55_19285	COG0583	DNA-binding transcription factor activity
CEJ55_19290	COG0583	DNA-binding transcription factor activity
CEJ55_19300	COG1376	ErfK ybiS ycfS ynhG family protein
CEJ55_19315	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
CEJ55_19335	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CEJ55_19370	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CEJ55_19405	COG1454	alcohol dehydrogenase
CEJ55_19405	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_19410	COG4656	Part of a membrane complex involved in electron transport
CEJ55_19420	COG4810	utilization protein
CEJ55_19435	COG1289	transmembrane transporter activity
CEJ55_19440	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CEJ55_19445	COG1686	Belongs to the peptidase S11 family
CEJ55_19450	COG2925	Exonuclease
CEJ55_19455	COG0425	Belongs to the sulfur carrier protein TusA family
CEJ55_19460	COG2391	methyltransferase activity
CEJ55_19465	COG0531	amino acid
CEJ55_19470	COG0583	DNA-binding transcription factor activity
CEJ55_19475	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CEJ55_19480	COG4115	mRNA cleavage
CEJ55_19485	COG2161	toxin-antitoxin pair type II binding
CEJ55_19505	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CEJ55_19515	COG0131	Imidazoleglycerol-phosphate dehydratase
CEJ55_19515	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CEJ55_19520	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CEJ55_19535	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CEJ55_19535	COG0140	phosphoribosyl-ATP diphosphatase activity
CEJ55_19555	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CEJ55_19565	COG0438	transferase activity, transferring glycosyl groups
CEJ55_19580	COG0297	glycogen (starch) synthase activity
CEJ55_19600	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CEJ55_19605	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CEJ55_19615	COG0438	transferase activity, transferring glycosyl groups
CEJ55_19620	COG2327	Polysaccharide pyruvyl transferase
CEJ55_19625	COG2244	polysaccharide biosynthetic process
CEJ55_19630	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CEJ55_19635	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CEJ55_19640	COG0662	Cupin 2, conserved barrel domain protein
CEJ55_19640	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CEJ55_19645	COG0297	glycogen (starch) synthase activity
CEJ55_19650	COG1051	belongs to the nudix hydrolase family
CEJ55_19655	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CEJ55_19660	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CEJ55_19665	COG0110	maltose O-acetyltransferase activity
CEJ55_19670	COG1216	Glycosyl transferase, family 2
CEJ55_19680	COG0438	transferase activity, transferring glycosyl groups
CEJ55_19685	COG1045	serine acetyltransferase
CEJ55_19690	COG0463	Glycosyl transferase, family 2
CEJ55_19695	COG0489	protein tyrosine kinase activity
CEJ55_19695	COG3206	protein involved in exopolysaccharide biosynthesis
CEJ55_19700	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CEJ55_19705	COG1596	polysaccharide export
CEJ55_19710	COG1253	flavin adenine dinucleotide binding
CEJ55_19715	COG2982	Protein involved in outer membrane biogenesis
CEJ55_19725	COG0572	uridine kinase
CEJ55_19730	COG3447	MASE1 domain protein
CEJ55_19730	COG5002	protein histidine kinase activity
CEJ55_19730	COG5001	Diguanylate cyclase
CEJ55_19735	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CEJ55_19740	COG0443	Heat shock 70 kDa protein
CEJ55_19745	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
CEJ55_19750	COG0631	protein serine/threonine phosphatase activity
CEJ55_19755	COG4245	von Willebrand factor, type A
CEJ55_19785	COG2205	protein histidine kinase activity
CEJ55_19790	COG0745	RESPONSE REGULATOR receiver
CEJ55_19800	COG3609	addiction module antidote protein, CC2985 family
CEJ55_19835	COG1063	alcohol dehydrogenase
CEJ55_19840	COG3775	system Galactitol-specific IIC component
CEJ55_19845	COG3414	Phosphotransferase system galactitol-specific IIB component
CEJ55_19850	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_19870	COG1830	Aldolase
CEJ55_19875	COG2211	Major facilitator Superfamily
CEJ55_19880	COG1397	ADP-ribosylglycohydrolase
CEJ55_19885	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_19890	COG2188	Transcriptional regulator
CEJ55_19895	COG3757	hydrolase, family 25
CEJ55_19900	COG0351	phosphomethylpyrimidine kinase
CEJ55_19920	COG5455	response to cobalt ion
CEJ55_19925	COG3539	Fimbrial protein
CEJ55_19930	COG3188	usher protein
CEJ55_19935	COG3121	Chaperone
CEJ55_19940	COG3539	Fimbrial protein
CEJ55_19955	COG0489	protein tyrosine kinase activity
CEJ55_19965	COG3831	ATPase activity
CEJ55_19970	COG3831	ATPase activity
CEJ55_19980	COG0714	Associated with various cellular activities
CEJ55_19985	COG2425	protein containing a von Willebrand factor type A (vWA) domain
CEJ55_19990	COG3552	Protein containing von Willebrand factor type A (VWA) domain
CEJ55_19995	COG4715	Zinc finger, swim domain protein
CEJ55_20000	COG4808	Protein conserved in bacteria
CEJ55_20005	COG4807	Protein conserved in bacteria
CEJ55_20010	COG3279	Response regulator of the LytR AlgR family
CEJ55_20015	COG3275	phosphorelay sensor kinase activity
CEJ55_20020	COG0789	Transcriptional regulator
CEJ55_20030	COG1174	glycine betaine transport
CEJ55_20035	COG1125	glycine betaine transport
CEJ55_20040	COG1174	glycine betaine transport
CEJ55_20045	COG1732	Glycine betaine
CEJ55_20050	COG1472	Belongs to the glycosyl hydrolase 3 family
CEJ55_20055	COG0277	FAD linked oxidase domain protein
CEJ55_20060	COG1686	Belongs to the peptidase S11 family
CEJ55_20070	COG0586	Pfam SNARE associated Golgi protein
CEJ55_20075	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_20100	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CEJ55_20110	COG1346	cytolysis
CEJ55_20120	COG2949	membrane
CEJ55_20130	COG0493	'glutamate synthase
CEJ55_20135	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CEJ55_20135	COG0167	dihydroorotate dehydrogenase activity
CEJ55_20140	COG4211	Belongs to the binding-protein-dependent transport system permease family
CEJ55_20145	COG1129	ABC transporter
CEJ55_20150	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_20155	COG1609	Transcriptional regulator
CEJ55_20165	COG2311	Membrane
CEJ55_20190	COG4771	TonB-dependent receptor
CEJ55_20200	COG0833	amino acid
CEJ55_20210	COG0583	DNA-binding transcription factor activity
CEJ55_20215	COG2855	membrane
CEJ55_20225	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_20225	COG1522	sequence-specific DNA binding
CEJ55_20230	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CEJ55_20240	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CEJ55_20245	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CEJ55_20250	COG2313	pseudouridylate synthase activity
CEJ55_20255	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CEJ55_20260	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_20260	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CEJ55_20260	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_20265	COG1105	Belongs to the carbohydrate kinase PfkB family
CEJ55_20270	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_20270	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_20275	COG2814	Major facilitator Superfamily
CEJ55_20290	COG0246	Mannitol dehydrogenase
CEJ55_20295	COG0523	cobalamin synthesis protein
CEJ55_20300	COG0671	phosphoesterase, PA-phosphatase related
CEJ55_20305	COG0791	NLP P60 protein
CEJ55_20310	COG2200	EAL domain
CEJ55_20315	COG4166	transmembrane transport
CEJ55_20320	COG4174	ABC transporter (Permease)
CEJ55_20325	COG4239	(ABC) transporter, permease
CEJ55_20330	COG4172	Belongs to the ABC transporter superfamily
CEJ55_20345	COG2814	Major facilitator Superfamily
CEJ55_20350	COG1187	pseudouridine synthase activity
CEJ55_20360	COG1061	Type III restriction enzyme res subunit
CEJ55_20380	COG3083	sulfuric ester hydrolase activity
CEJ55_20400	COG2197	response regulator
CEJ55_20405	COG3088	subunit of a heme lyase
CEJ55_20405	COG4235	cytochrome complex assembly
CEJ55_20410	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CEJ55_20415	COG1138	Cytochrome C-type biogenesis protein
CEJ55_20425	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CEJ55_20430	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CEJ55_20435	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CEJ55_20445	COG3005	denitrification pathway
CEJ55_20450	COG3043	anaerobic respiration
CEJ55_20455	COG0348	domain, Protein
CEJ55_20460	COG0437	4 iron, 4 sulfur cluster binding
CEJ55_20470	COG3062	negative regulation of establishment of protein localization
CEJ55_20475	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_20475	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_20495	COG4615	Cyclic peptide transporter
CEJ55_20500	COG3145	DNA-N1-methyladenine dioxygenase activity
CEJ55_20505	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CEJ55_20505	COG2169	Transcriptional regulator
CEJ55_20510	COG1477	protein flavinylation
CEJ55_20515	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CEJ55_20530	COG2198	Histidine kinase
CEJ55_20530	COG0642	Histidine kinase
CEJ55_20535	COG2197	response regulator
CEJ55_20540	COG2205	protein histidine kinase activity
CEJ55_20540	COG0784	Response regulator, receiver
CEJ55_20545	COG4676	Protein conserved in bacteria
CEJ55_20550	COG5445	Predicted secreted protein (DUF2300)
CEJ55_20555	COG2373	Large extracellular alpha-helical protein
CEJ55_20560	COG3234	Protein of unknown function (DUF1175)
CEJ55_20565	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
CEJ55_20570	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CEJ55_20580	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_20590	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CEJ55_20595	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CEJ55_20600	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CEJ55_20605	COG3642	lipopolysaccharide core region biosynthetic process
CEJ55_20615	COG0583	DNA-binding transcription factor activity
CEJ55_20620	COG0584	glycerophosphoryl diester phosphodiesterase
CEJ55_20625	COG2271	Major facilitator Superfamily
CEJ55_20630	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CEJ55_20640	COG0247	lactate metabolic process
CEJ55_20645	COG5464	transposase or invertase
CEJ55_20650	COG3836	Belongs to the HpcH HpaI aldolase family
CEJ55_20715	COG0318	PFAM AMP-dependent synthetase and ligase
CEJ55_20725	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CEJ55_20740	COG1169	isochorismate synthase
CEJ55_20745	COG4575	ribosome binding
CEJ55_20750	COG2153	protein acetylation
CEJ55_20785	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEJ55_20790	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CEJ55_20800	COG0839	Belongs to the complex I subunit 6 family
CEJ55_20805	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEJ55_20815	COG1034	ATP synthesis coupled electron transport
CEJ55_20820	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CEJ55_20825	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CEJ55_20845	COG0583	DNA-binding transcription factor activity
CEJ55_20855	COG0436	Aminotransferase
CEJ55_20865	COG0490	domain, Protein
CEJ55_20865	COG0471	metal ion transport
CEJ55_20870	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CEJ55_20885	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CEJ55_20890	COG0280	phosphate acetyltransferase
CEJ55_20890	COG0857	belongs to the CobB CobQ family
CEJ55_20895	COG1288	antiporter activity
CEJ55_20900	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
CEJ55_20905	COG0622	Phosphoesterase
CEJ55_20910	COG0625	glutathione transferase activity
CEJ55_20915	COG0625	glutathione transferase activity
CEJ55_20920	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CEJ55_20925	COG1090	epimerase
CEJ55_20930	COG5464	transposase or invertase
CEJ55_20935	COG4598	ABC transporter
CEJ55_20940	COG4160	amino acid transport
CEJ55_20945	COG4215	(ABC) transporter
CEJ55_20950	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_20955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_20960	COG0163	prenyltransferase activity
CEJ55_20965	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CEJ55_20970	COG1286	toxin biosynthetic process
CEJ55_20975	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CEJ55_20980	COG0285	dihydrofolate synthase activity
CEJ55_20990	COG0586	Pfam SNARE associated Golgi protein
CEJ55_21000	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CEJ55_21015	COG2814	Major facilitator Superfamily
CEJ55_21025	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CEJ55_21040	COG3101	peptidyl-lysine hydroxylation
CEJ55_21045	COG0730	response to heat
CEJ55_21075	COG3539	Fimbrial protein
CEJ55_21080	COG3539	Fimbrial protein
CEJ55_21085	COG3539	Fimbrial protein
CEJ55_21090	COG3121	Chaperone
CEJ55_21095	COG3188	usher protein
CEJ55_21100	COG3539	Fimbrial protein
CEJ55_21105	COG2062	phosphohistidine phosphatase, SixA
CEJ55_21120	COG3691	Protein conserved in bacteria
CEJ55_21130	COG2067	long-chain fatty acid transport protein
CEJ55_21145	COG2853	Lipoprotein
CEJ55_21155	COG2116	formate transmembrane transporter activity
CEJ55_21165	COG0582	viral genome integration into host DNA
CEJ55_21295	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CEJ55_21345	COG0305	Participates in initiation and elongation during chromosome replication
CEJ55_21470	COG3311	Transcriptional regulator
CEJ55_21475	COG0582	viral genome integration into host DNA
CEJ55_21560	COG2610	gluconate transmembrane transporter activity
CEJ55_21570	COG0477	Major facilitator Superfamily
CEJ55_21575	COG1566	PFAM secretion protein HlyD family protein
CEJ55_21580	COG2197	response regulator
CEJ55_21585	COG2205	protein histidine kinase activity
CEJ55_21585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEJ55_21585	COG0784	Response regulator, receiver
CEJ55_21585	COG2198	Histidine kinase
CEJ55_21590	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CEJ55_21595	COG0679	Auxin Efflux Carrier
CEJ55_21600	COG0028	Belongs to the TPP enzyme family
CEJ55_21625	COG1560	Kdo2-lipid A biosynthetic process
CEJ55_21635	COG0436	Aminotransferase
CEJ55_21640	COG3275	phosphorelay sensor kinase activity
CEJ55_21645	COG3279	Response regulator of the LytR AlgR family
CEJ55_21650	COG2207	Transcriptional regulator
CEJ55_21660	COG1363	Peptidase, m42
CEJ55_21665	COG0006	proline dipeptidase activity
CEJ55_21670	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_21675	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CEJ55_21700	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CEJ55_21705	COG2199	diguanylate cyclase activity
CEJ55_21705	COG2200	EAL domain
CEJ55_21720	COG3415	Transposase
CEJ55_21725	COG3415	Transposase
CEJ55_21755	COG0583	DNA-binding transcription factor activity
CEJ55_21765	COG2211	Major facilitator Superfamily
CEJ55_21770	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CEJ55_21780	COG0583	DNA-binding transcription factor activity
CEJ55_21785	COG0385	Bile acid
CEJ55_21790	COG3530	Putative quorum-sensing-regulated virulence factor
CEJ55_21810	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CEJ55_21815	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_21820	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CEJ55_21825	COG2190	(PTS) system
CEJ55_21840	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CEJ55_21845	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CEJ55_21850	COG4208	sulfate ABC transporter
CEJ55_21855	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CEJ55_21860	COG4150	thiosulfate binding
CEJ55_21865	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_21880	COG1263	PTS System
CEJ55_21880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_21885	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CEJ55_21890	COG2837	iron assimilation
CEJ55_21905	COG0456	acetyltransferase
CEJ55_21910	COG0860	N-Acetylmuramoyl-L-alanine amidase
CEJ55_21920	COG2207	Transcriptional regulator
CEJ55_21925	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CEJ55_21930	COG4816	utilization protein
CEJ55_21940	COG4303	Ethanolamine ammonia lyase large subunit
CEJ55_21945	COG4819	ethanolamine utilization protein
CEJ55_21950	COG3192	ethanolamine utilization protein
CEJ55_21955	COG1454	alcohol dehydrogenase
CEJ55_21960	COG4820	ethanolamine utilization protein (EutJ)
CEJ55_21965	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_21970	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CEJ55_21975	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CEJ55_21980	COG0280	phosphate acetyltransferase
CEJ55_21985	COG4812	Cobalamin adenosyltransferase
CEJ55_21990	COG4766	ethanolamine catabolic process
CEJ55_21995	COG4917	ethanolamine utilization protein
CEJ55_22000	COG4810	utilization protein
CEJ55_22005	COG0280	phosphate acetyltransferase
CEJ55_22005	COG0281	malic enzyme
CEJ55_22015	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CEJ55_22020	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CEJ55_22025	COG5342	invasion associated locus B
CEJ55_22035	COG0493	'glutamate synthase
CEJ55_22035	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_22040	COG3850	Histidine kinase
CEJ55_22045	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CEJ55_22055	COG1393	Belongs to the ArsC family
CEJ55_22070	COG0400	carboxylic ester hydrolase activity
CEJ55_22075	COG1444	tRNA N-acetyltransferase activity
CEJ55_22080	COG2321	neutral zinc metallopeptidase
CEJ55_22100	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CEJ55_22110	COG2716	regulation of RNA biosynthetic process
CEJ55_22115	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CEJ55_22120	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_22125	COG0651	ATP synthesis coupled electron transport
CEJ55_22130	COG0650	Formate hydrogenlyase subunit 4
CEJ55_22140	COG4237	Hydrogenase 4 membrane
CEJ55_22145	COG0651	ATP synthesis coupled electron transport
CEJ55_22150	COG3261	NADH dehydrogenase
CEJ55_22150	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CEJ55_22155	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEJ55_22160	COG3260	NADH ubiquinone oxidoreductase 20
CEJ55_22170	COG3604	Transcriptional regulator
CEJ55_22175	COG2116	formate transmembrane transporter activity
CEJ55_22180	COG2116	formate transmembrane transporter activity
CEJ55_22190	COG0628	permease
CEJ55_22195	COG4783	chaperone-mediated protein folding
CEJ55_22200	COG1393	Belongs to the ArsC family
CEJ55_22210	COG2233	PERMEase
CEJ55_22230	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CEJ55_22235	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CEJ55_22240	COG0248	Ppx GppA phosphatase
CEJ55_22245	COG2200	EAL domain
CEJ55_22265	COG3133	Outer membrane lipoprotein
CEJ55_22280	COG0517	IMP dehydrogenase activity
CEJ55_22280	COG0516	GMP reductase activity
CEJ55_22290	COG1645	bacterial-type flagellum-dependent swarming motility
CEJ55_22305	COG2976	Protein conserved in bacteria
CEJ55_22335	COG4953	penicillin-binding protein 1C
CEJ55_22340	COG2373	Large extracellular alpha-helical protein
CEJ55_22345	COG2897	thiosulfate sulfurtransferase activity
CEJ55_22360	COG2975	iron-sulfur cluster assembly
CEJ55_22365	COG0633	Ferredoxin
CEJ55_22385	COG0822	iron-sulfur transferase activity
CEJ55_22405	COG0483	inositol monophosphate 1-phosphatase activity
CEJ55_22410	COG1073	alpha beta
CEJ55_22415	COG3711	transcriptional antiterminator
CEJ55_22420	COG2814	Major facilitator Superfamily
CEJ55_22425	COG0583	DNA-binding transcription factor activity
CEJ55_22430	COG4638	Rieske (2fe-2S)
CEJ55_22455	COG2259	Doxx family
CEJ55_22460	COG2017	converts alpha-aldose to the beta-anomer
CEJ55_22465	COG1063	alcohol dehydrogenase
CEJ55_22470	COG1172	Belongs to the binding-protein-dependent transport system permease family
CEJ55_22475	COG1129	ABC transporter
CEJ55_22480	COG1879	ABC-type sugar transport system periplasmic component
CEJ55_22485	COG0457	Tetratricopeptide repeat
CEJ55_22490	COG1940	carbohydrate kinase activity
CEJ55_22500	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CEJ55_22500	COG1017	nitric oxide dioxygenase activity
CEJ55_22505	COG0347	Belongs to the P(II) protein family
CEJ55_22510	COG2204	response regulator
CEJ55_22515	COG3170	Tfp pilus assembly protein FimV
CEJ55_22520	COG2205	protein histidine kinase activity
CEJ55_22525	COG0047	phosphoribosylformylglycinamidine synthase activity
CEJ55_22525	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CEJ55_22540	COG0590	tRNA wobble adenosine to inosine editing
CEJ55_22545	COG0560	Phosphoserine phosphatase
CEJ55_22550	COG1737	Transcriptional regulator
CEJ55_22580	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CEJ55_22590	COG5301	cellulose 1,4-beta-cellobiosidase activity
CEJ55_22715	COG1783	phage Terminase large subunit
CEJ55_22840	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_22865	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CEJ55_22890	COG0681	Belongs to the peptidase S26 family
CEJ55_22900	COG3086	response to oxidative stress
CEJ55_22905	COG3026	antisigma factor binding
CEJ55_22910	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
CEJ55_22915	COG1595	DNA-templated transcription, initiation
CEJ55_22920	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CEJ55_22930	COG0513	Belongs to the DEAD box helicase family
CEJ55_22940	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_22945	COG0583	DNA-binding transcription factor activity
CEJ55_22965	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CEJ55_22975	COG3118	belongs to the thioredoxin family
CEJ55_22985	COG1042	CoA-binding domain protein
CEJ55_22985	COG0045	succinate-CoA ligase (ADP-forming) activity
CEJ55_22985	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CEJ55_22990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CEJ55_22995	COG5544	Lipoprotein
CEJ55_23000	COG0477	Major facilitator Superfamily
CEJ55_23030	COG0542	response to heat
CEJ55_23040	COG0564	pseudouridine synthase activity
CEJ55_23045	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEJ55_23055	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CEJ55_23060	COG1605	Chorismate mutase
CEJ55_23060	COG0077	Prephenate dehydratase
CEJ55_23065	COG0287	Prephenate dehydrogenase
CEJ55_23065	COG1605	Chorismate mutase
CEJ55_23070	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CEJ55_23085	COG2199	diguanylate cyclase activity
CEJ55_23090	COG2885	chlorophyll binding
CEJ55_23115	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CEJ55_23120	COG4137	Cytochrome C assembly protein
CEJ55_23125	COG4536	flavin adenine dinucleotide binding
CEJ55_23145	COG0497	DNA recombination
CEJ55_23150	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEJ55_23155	COG2914	Belongs to the UPF0125 (RnfH) family
CEJ55_23160	COG2867	negative regulation of translational initiation
CEJ55_23180	COG3468	outer membrane autotransporter barrel domain protein
CEJ55_23220	COG0366	Alpha amylase catalytic
CEJ55_23230	COG0579	oxidoreductase
CEJ55_23235	COG1012	belongs to the aldehyde dehydrogenase family
CEJ55_23240	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CEJ55_23245	COG1113	amino acid transport
CEJ55_23250	COG1802	Transcriptional regulator
CEJ55_23255	COG1652	LysM domain
CEJ55_23260	COG0401	homolog of Blt101
CEJ55_23265	COG0640	Transcriptional regulator
CEJ55_23270	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CEJ55_23275	COG2916	Histone family protein nucleoid-structuring protein H-NS
CEJ55_23290	COG4575	ribosome binding
CEJ55_23295	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CEJ55_23300	COG1780	Probably involved in ribonucleotide reductase function
CEJ55_23305	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CEJ55_23310	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CEJ55_23315	COG4175	Glycine betaine
CEJ55_23320	COG4176	ABC-type proline glycine betaine transport system permease component
CEJ55_23325	COG2113	Glycine betaine
CEJ55_23330	COG2814	Major facilitator Superfamily
CEJ55_23335	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CEJ55_23345	COG1846	Transcriptional regulator
CEJ55_23350	COG1566	PFAM secretion protein HlyD family protein
CEJ55_23355	COG2814	Major facilitator Superfamily
CEJ55_23370	COG1238	metal cluster binding
CEJ55_23375	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CEJ55_23420	COG1546	Belongs to the CinA family
CEJ55_23425	COG2951	lytic endotransglycosylase activity
CEJ55_23430	COG3730	PTS system glucitol sorbitol-specific
CEJ55_23435	COG3732	PTS system glucitol sorbitol-specific
CEJ55_23445	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_23450	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_23455	COG1349	DNA-binding transcription factor activity
CEJ55_23460	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CEJ55_23460	COG0517	IMP dehydrogenase activity
CEJ55_23480	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CEJ55_23485	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_23490	COG1609	Transcriptional regulator
CEJ55_23495	COG1263	PTS System
CEJ55_23495	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CEJ55_23500	COG2723	6-phospho-beta-galactosidase activity
CEJ55_23505	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CEJ55_23515	COG3260	NADH ubiquinone oxidoreductase 20
CEJ55_23520	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEJ55_23525	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CEJ55_23525	COG3261	NADH dehydrogenase
CEJ55_23530	COG0650	Formate hydrogenlyase subunit 4
CEJ55_23535	COG0651	ATP synthesis coupled electron transport
CEJ55_23540	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_23555	COG0375	protein maturation
CEJ55_23560	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CEJ55_23565	COG0298	carbon dioxide binding
CEJ55_23570	COG0409	Hydrogenase expression formation protein
CEJ55_23575	COG0309	Hydrogenase expression formation protein (HypE)
CEJ55_23580	COG3604	Transcriptional regulator
CEJ55_23595	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CEJ55_23600	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CEJ55_23605	COG1349	DNA-binding transcription factor activity
CEJ55_23615	COG3395	kinase activity
CEJ55_23620	COG0235	Class ii aldolase
CEJ55_23625	COG3622	Belongs to the hyi family
CEJ55_23630	COG2610	gluconate transmembrane transporter activity
CEJ55_23640	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CEJ55_23655	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CEJ55_23660	COG4942	peptidase
CEJ55_23660	COG1388	LysM domain
CEJ55_23715	COG2234	aminopeptidase activity
CEJ55_23720	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CEJ55_23725	COG1518	maintenance of DNA repeat elements
CEJ55_23740	COG1857	crispr-associated protein
CEJ55_23755	COG1203	CRISPR-associated helicase, Cas3
CEJ55_23780	COG0720	synthase
CEJ55_23785	COG0644	oxidoreductase
CEJ55_23790	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CEJ55_23795	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CEJ55_23800	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CEJ55_23805	COG2086	electron transfer activity
CEJ55_23810	COG0477	Major facilitator Superfamily
CEJ55_23815	COG0277	FAD linked oxidase domain protein
CEJ55_23820	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_23825	COG2223	nitrite transmembrane transporter activity
CEJ55_23830	COG1070	Carbohydrate kinase
CEJ55_23835	COG0602	queuosine metabolic process
CEJ55_23860	COG3956	TIGRFAM MazG family protein
CEJ55_23865	COG2337	Toxic component of a toxin-antitoxin (TA) module
CEJ55_23870	COG2336	PFAM SpoVT AbrB
CEJ55_23875	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CEJ55_23885	COG2205	protein histidine kinase activity
CEJ55_23885	COG3437	response regulator, receiver
CEJ55_23885	COG3850	Histidine kinase
CEJ55_23885	COG4999	Histidine kinase
CEJ55_23890	COG4948	Mandelate Racemase Muconate Lactonizing
CEJ55_23895	COG4948	Mandelate Racemase Muconate Lactonizing
CEJ55_23900	COG2271	Major facilitator Superfamily
CEJ55_23905	COG0716	FMN binding
CEJ55_23910	COG0564	pseudouridine synthase activity
CEJ55_23915	COG3098	single-species biofilm formation
CEJ55_23930	COG1611	Belongs to the LOG family
CEJ55_23935	COG0814	amino acid
CEJ55_23940	COG1760	l-serine dehydratase
CEJ55_23950	COG1454	alcohol dehydrogenase
CEJ55_23955	COG0235	Class ii aldolase
CEJ55_23960	COG0738	Major facilitator superfamily
CEJ55_23970	COG1070	Carbohydrate kinase
CEJ55_23980	COG1349	DNA-binding transcription factor activity
CEJ55_23990	COG2363	Small membrane protein
CEJ55_23995	COG0583	DNA-binding transcription factor activity
CEJ55_24005	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CEJ55_24010	COG2166	iron-sulfur cluster assembly
CEJ55_24015	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CEJ55_24020	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CEJ55_24045	COG0860	N-Acetylmuramoyl-L-alanine amidase
CEJ55_24050	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CEJ55_24050	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CEJ55_24055	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CEJ55_24060	COG1074	ATP-dependent DNA helicase activity
CEJ55_24065	COG1025	Belongs to the peptidase M16 family
CEJ55_24070	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CEJ55_24075	COG4967	type IV pilus modification protein PilV
CEJ55_24085	COG4795	General secretion pathway protein
CEJ55_24090	COG2165	general secretion pathway protein
CEJ55_24105	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
CEJ55_24120	COG0861	Integral membrane protein TerC family
CEJ55_24130	COG0667	Aldo Keto reductase
CEJ55_24145	COG1609	Transcriptional regulator
CEJ55_24150	COG0019	diaminopimelate decarboxylase activity
CEJ55_24155	COG0583	DNA-binding transcription factor activity
CEJ55_24160	COG1794	racemase activity, acting on amino acids and derivatives
CEJ55_24165	COG2814	Major facilitator Superfamily
CEJ55_24170	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_24180	COG0183	Belongs to the thiolase family
CEJ55_24185	COG0814	amino acid
CEJ55_24190	COG2771	luxR family
CEJ55_24195	COG3710	Transcriptional regulator
CEJ55_24225	COG0457	Tetratricopeptide repeat
CEJ55_24230	COG0457	Tetratricopeptide repeat
CEJ55_24230	COG3710	Transcriptional regulator
CEJ55_24250	COG2197	response regulator
CEJ55_24255	COG2197	response regulator
CEJ55_24345	COG3387	PFAM Glycoside hydrolase 15-related
CEJ55_24355	COG4942	peptidase
CEJ55_24365	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CEJ55_24370	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CEJ55_24375	COG2080	2 iron, 2 sulfur cluster binding
CEJ55_24385	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CEJ55_24390	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CEJ55_24395	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CEJ55_24405	COG0549	Belongs to the carbamate kinase family
CEJ55_24410	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CEJ55_24410	COG3608	succinylglutamate desuccinylase aspartoacylase
CEJ55_24415	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CEJ55_24420	COG2068	MobA-Related Protein
CEJ55_24425	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_24425	COG0493	'glutamate synthase
CEJ55_24430	COG0402	S-adenosylhomocysteine deaminase activity
CEJ55_24435	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CEJ55_24440	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CEJ55_24440	COG2080	2 iron, 2 sulfur cluster binding
CEJ55_24445	COG2233	PERMEase
CEJ55_24450	COG0402	S-adenosylhomocysteine deaminase activity
CEJ55_24455	COG2252	PERMEase
CEJ55_24460	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CEJ55_24475	COG2233	PERMEase
CEJ55_24500	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CEJ55_24505	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CEJ55_24510	COG4974	Belongs to the 'phage' integrase family
CEJ55_24515	COG0716	FMN binding
CEJ55_24525	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CEJ55_24540	COG3547	Transposase (IS116 IS110 IS902 family)
CEJ55_24545	COG1272	protein, Hemolysin III
CEJ55_24555	COG2723	6-phospho-beta-galactosidase activity
CEJ55_24560	COG1028	Short-chain dehydrogenase reductase Sdr
CEJ55_24580	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CEJ55_24585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CEJ55_24590	COG0006	proline dipeptidase activity
CEJ55_24615	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CEJ55_24630	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CEJ55_24655	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CEJ55_24655	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CEJ55_24660	COG1703	isobutyryl-CoA mutase activity
CEJ55_24665	COG1024	Enoyl-CoA hydratase
CEJ55_24670	COG0427	acetyl-CoA hydrolase
CEJ55_24675	COG0583	DNA-binding transcription factor activity
CEJ55_24680	COG2968	Membrane
CEJ55_24685	COG1279	arginine transmembrane transporter activity
CEJ55_24690	COG0668	transmembrane transport
CEJ55_24695	COG0191	fructose-bisphosphate aldolase activity
CEJ55_24730	COG1122	ATPase activity
CEJ55_24735	COG1122	ATPase activity
CEJ55_24740	COG1072	(Pantothenic acid kinase))
CEJ55_24750	COG1494	fructose-1,6-bisphosphatase
CEJ55_24755	COG1063	alcohol dehydrogenase
CEJ55_24760	COG2213	PTS system mannitol-specific
CEJ55_24765	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CEJ55_24770	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CEJ55_24775	COG0501	Belongs to the peptidase M48B family
CEJ55_24790	COG1166	arginine decarboxylase activity
CEJ55_24815	COG2814	Major facilitator Superfamily
CEJ55_24825	COG2356	endonuclease I
CEJ55_24830	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CEJ55_24835	COG0189	ligase activity
CEJ55_24850	COG2805	Type II/IV secretion system protein
CEJ55_24855	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CEJ55_24860	COG0762	integral membrane protein
CEJ55_24870	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CEJ55_24875	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CEJ55_24885	COG0252	asparaginase activity
CEJ55_24895	COG3171	Protein conserved in bacteria
CEJ55_24910	COG1194	a g-specific adenine glycosylase
CEJ55_24925	COG2211	Major facilitator Superfamily
CEJ55_24930	COG1982	Orn Lys Arg decarboxylase major
CEJ55_24940	COG1811	Na channel or pump
CEJ55_24950	COG0582	viral genome integration into host DNA
CEJ55_24955	COG2194	sulfuric ester hydrolase activity
CEJ55_24965	COG0582	viral genome integration into host DNA
CEJ55_25100	COG3210	domain, Protein
CEJ55_25105	COG3210	domain, Protein
CEJ55_25115	COG3210	domain, Protein