locus-tag class description HLY11_00010 PF05840 Bacteriophage replication gene A protein (GPA) HLY11_00015 PF13166 AAA domain HLY11_00110 PF07484 Phage Tail Collar Domain HLY11_00115 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HLY11_00120 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HLY11_00130 PF02796 Helix-turn-helix domain of resolvase HLY11_00130 PF00239 Resolvase, N terminal domain HLY11_00170 PF04606 Ogr/Delta-like zinc finger HLY11_00185 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HLY11_00190 PF07411 Domain of unknown function (DUF1508) HLY11_00195 PF00072 Response regulator receiver domain HLY11_00195 PF00486 Transcriptional regulatory protein, C terminal HLY11_00200 PF00512 His Kinase A (phospho-acceptor) domain HLY11_00200 PF00672 HAMP domain HLY11_00200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_00205 PF07690 Major Facilitator Superfamily HLY11_00210 PF00873 AcrB/AcrD/AcrF family HLY11_00215 PF00873 AcrB/AcrD/AcrF family HLY11_00220 PF13533 Biotin-lipoyl like HLY11_00240 PF00092 von Willebrand factor type A domain HLY11_00250 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) HLY11_00260 PF00012 Hsp70 protein HLY11_00265 PF06029 AlkA N-terminal domain HLY11_00265 PF00730 HhH-GPD superfamily base excision DNA repair protein HLY11_00270 PF00563 EAL domain HLY11_00270 PF05231 MASE1 HLY11_00270 PF00990 Diguanylate cyclase, GGDEF domain HLY11_00270 PF08447 PAS fold HLY11_00270 PF08448 PAS fold HLY11_00270 PF13426 PAS domain HLY11_00275 PF00485 Phosphoribulokinase / Uridine kinase family HLY11_00280 PF00692 dUTPase HLY11_00285 PF05170 AsmA family HLY11_00290 PF03471 Transporter associated domain HLY11_00290 PF00571 CBS domain HLY11_00290 PF03741 Integral membrane protein TerC family HLY11_00300 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HLY11_00300 PF02563 Polysaccharide biosynthesis/export protein HLY11_00300 PF10531 SLBB domain HLY11_00305 PF01451 Low molecular weight phosphotyrosine protein phosphatase HLY11_00310 PF02706 Chain length determinant protein HLY11_00310 PF13807 G-rich domain on putative tyrosine kinase HLY11_00310 PF13614 AAA domain HLY11_00315 PF00535 Glycosyl transferase family 2 HLY11_00320 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_00325 PF13439 Glycosyltransferase Family 4 HLY11_00325 PF00534 Glycosyl transferases group 1 HLY11_00335 PF00535 Glycosyl transferase family 2 HLY11_00340 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_00345 PF16363 GDP-mannose 4,6 dehydratase HLY11_00350 PF01370 NAD dependent epimerase/dehydratase family HLY11_00355 PF00293 NUDIX domain HLY11_00360 PF13579 Glycosyl transferase 4-like domain HLY11_00360 PF00534 Glycosyl transferases group 1 HLY11_00365 PF00483 Nucleotidyl transferase HLY11_00365 PF01050 Mannose-6-phosphate isomerase HLY11_00370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HLY11_00370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HLY11_00370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HLY11_00370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HLY11_00375 PF02397 Bacterial sugar transferase HLY11_00385 PF04230 Polysaccharide pyruvyl transferase HLY11_00390 PF00534 Glycosyl transferases group 1 HLY11_00390 PF13439 Glycosyltransferase Family 4 HLY11_00400 PF00483 Nucleotidyl transferase HLY11_00410 PF13439 Glycosyltransferase Family 4 HLY11_00410 PF00534 Glycosyl transferases group 1 HLY11_00430 PF02719 Polysaccharide biosynthesis protein HLY11_00430 PF08485 Polysaccharide biosynthesis protein C-terminal HLY11_00435 PF04321 RmlD substrate binding domain HLY11_00450 PF00534 Glycosyl transferases group 1 HLY11_00450 PF13439 Glycosyltransferase Family 4 HLY11_00455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HLY11_00455 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HLY11_00460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HLY11_00460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HLY11_00460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HLY11_00465 PF02706 Chain length determinant protein HLY11_00470 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HLY11_00470 PF01502 Phosphoribosyl-AMP cyclohydrolase HLY11_00475 PF00977 Histidine biosynthesis protein HLY11_00480 PF00977 Histidine biosynthesis protein HLY11_00485 PF00117 Glutamine amidotransferase class-I HLY11_00490 PF00475 Imidazoleglycerol-phosphate dehydratase HLY11_00490 PF08645 Polynucleotide kinase 3 phosphatase HLY11_00495 PF00155 Aminotransferase class I and II HLY11_00500 PF00815 Histidinol dehydrogenase HLY11_00505 PF01634 ATP phosphoribosyltransferase HLY11_00505 PF08029 HisG, C-terminal domain HLY11_00515 PF01370 NAD dependent epimerase/dehydratase family HLY11_00520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_00520 PF03466 LysR substrate binding domain HLY11_00530 PF13520 Amino acid permease HLY11_00535 PF08411 Exonuclease C-terminal HLY11_00535 PF00929 Exonuclease HLY11_00540 PF00768 D-alanyl-D-alanine carboxypeptidase HLY11_00540 PF07943 Penicillin-binding protein 5, C-terminal domain HLY11_00545 PF06445 GyrI-like small molecule binding domain HLY11_00550 PF04632 Fusaric acid resistance protein family HLY11_00555 PF04363 Protein of unknown function (DUF496) HLY11_00560 PF10662 Ethanolamine utilisation - propanediol utilisation HLY11_00565 PF00936 BMC domain HLY11_00575 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HLY11_00575 PF13237 4Fe-4S dicluster domain HLY11_00575 PF13375 RnfC Barrel sandwich hybrid domain HLY11_00575 PF10531 SLBB domain HLY11_00580 PF00171 Aldehyde dehydrogenase family HLY11_00580 PF00465 Iron-containing alcohol dehydrogenase HLY11_00585 PF00171 Aldehyde dehydrogenase family HLY11_00590 PF01923 Cobalamin adenosyltransferase HLY11_00595 PF03319 Ethanolamine utilisation protein EutN/carboxysome HLY11_00605 PF06130 Phosphate propanoyltransferase HLY11_00615 PF00936 BMC domain HLY11_00625 PF18427 DD-reactivating factor swiveling domain HLY11_00625 PF08841 Diol dehydratase reactivase ATPase-like domain HLY11_00630 PF02287 Dehydratase small subunit HLY11_00635 PF02288 Dehydratase medium subunit HLY11_00640 PF02286 Dehydratase large subunit HLY11_00645 PF00936 BMC domain HLY11_00650 PF00936 BMC domain HLY11_00655 PF00230 Major intrinsic protein HLY11_00660 PF10114 Sensory domain found in PocR HLY11_00660 PF12833 Helix-turn-helix domain HLY11_00665 PF11761 Cobalamin biosynthesis central region HLY11_00665 PF01890 Cobalamin synthesis G C-terminus HLY11_00665 PF11760 Cobalamin synthesis G N-terminal HLY11_00670 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HLY11_00675 PF02654 Cobalamin-5-phosphate synthase HLY11_00680 PF02277 Phosphoribosyltransferase HLY11_00685 PF17969 L,D-transpeptidase C-terminal domain HLY11_00685 PF03734 L,D-transpeptidase catalytic domain HLY11_00690 PF04198 Putative sugar-binding domain HLY11_00695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_00700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_00705 PF03611 PTS system sugar-specific permease component HLY11_00710 PF02502 Ribose/Galactose Isomerase HLY11_00715 PF00455 DeoR C terminal sensor domain HLY11_00715 PF08220 DeoR-like helix-turn-helix domain HLY11_00725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_00730 PF03611 PTS system sugar-specific permease component HLY11_00735 PF00834 Ribulose-phosphate 3 epimerase family HLY11_00745 PF01380 SIS domain HLY11_00755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_00755 PF03466 LysR substrate binding domain HLY11_00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_00760 PF03466 LysR substrate binding domain HLY11_00770 PF01554 MatE HLY11_00780 PF01709 Transcriptional regulator HLY11_00785 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus HLY11_00785 PF01048 Phosphorylase superfamily HLY11_00790 PF00083 Sugar (and other) transporter HLY11_00790 PF07690 Major Facilitator Superfamily HLY11_00800 PF09134 Invasin, domain 3 HLY11_00800 PF02369 Bacterial Ig-like domain (group 1) HLY11_00800 PF11924 Inverse autotransporter, beta-domain HLY11_00810 PF06167 Glucose-regulated metallo-peptidase M90 HLY11_00820 PF01292 Prokaryotic cytochrome b561 HLY11_00825 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HLY11_00830 PF01794 Ferric reductase like transmembrane component HLY11_00835 PF00174 Oxidoreductase molybdopterin binding domain HLY11_00840 PF00576 HIUase/Transthyretin family HLY11_00845 PF00072 Response regulator receiver domain HLY11_00845 PF00486 Transcriptional regulatory protein, C terminal HLY11_00850 PF00512 His Kinase A (phospho-acceptor) domain HLY11_00850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_00860 PF00267 Gram-negative porin HLY11_00870 PF01966 HD domain HLY11_00875 PF18284 DNA methylase N-terminal domain HLY11_00875 PF00145 C-5 cytosine-specific DNA methylase HLY11_00880 PF03852 DNA mismatch endonuclease Vsr HLY11_00885 PF00892 EamA-like transporter family HLY11_00890 PF05661 Protein of unknown function (DUF808) HLY11_00895 PF09926 Uncharacterized small protein (DUF2158) HLY11_00900 PF00990 Diguanylate cyclase, GGDEF domain HLY11_00900 PF17151 Periplasmic sensor domain HLY11_00910 PF10733 Protein of unknown function (DUF2525) HLY11_00915 PF10781 Dextransucrase DSRB HLY11_00920 PF00196 Bacterial regulatory proteins, luxR family HLY11_00925 PF01311 Bacterial export proteins, family 1 HLY11_00930 PF01313 Bacterial export proteins, family 3 HLY11_00935 PF00813 FliP family HLY11_00940 PF04347 Flagellar biosynthesis protein, FliO HLY11_00945 PF16973 Flagellar motor switch protein FliN N-terminal HLY11_00945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HLY11_00950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HLY11_00950 PF02154 Flagellar motor switch protein FliM HLY11_00955 PF03748 Flagellar basal body-associated protein FliL HLY11_00960 PF02120 Flagellar hook-length control protein FliK HLY11_00965 PF02050 Flagellar FliJ protein HLY11_00970 PF18269 T3SS EscN ATPase C-terminal domain HLY11_00970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HLY11_00975 PF02108 Flagellar assembly protein FliH HLY11_00980 PF14842 FliG N-terminal domain HLY11_00980 PF14841 FliG middle domain HLY11_00980 PF01706 FliG C-terminal domain HLY11_00985 PF08345 Flagellar M-ring protein C-terminal HLY11_00985 PF01514 Secretory protein of YscJ/FliF family HLY11_00990 PF02049 Flagellar hook-basal body complex protein FliE HLY11_00995 PF02586 SOS response associated peptidase (SRAP) HLY11_01000 PF01206 Sulfurtransferase TusA HLY11_01005 PF04143 Sulphur transport HLY11_01010 PF13987 YedD-like protein HLY11_01015 PF00128 Alpha amylase, catalytic domain HLY11_01015 PF02806 Alpha amylase, C-terminal all-beta domain HLY11_01020 PF05400 Flagellar protein FliT HLY11_01025 PF02561 Flagellar protein FliS HLY11_01030 PF07195 Flagellar hook-associated protein 2 C-terminus HLY11_01030 PF02465 Flagellar hook-associated protein 2 N-terminus HLY11_01035 PF08884 Flagellin D3 domain HLY11_01035 PF00669 Bacterial flagellin N-terminal helical region HLY11_01035 PF00700 Bacterial flagellin C-terminal helical region HLY11_01040 PF04542 Sigma-70 region 2 HLY11_01040 PF04539 Sigma-70 region 3 HLY11_01040 PF04545 Sigma-70, region 4 HLY11_01045 PF02899 Phage integrase, N-terminal SAM-like domain HLY11_01055 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_01070 PF00196 Bacterial regulatory proteins, luxR family HLY11_01070 PF03472 Autoinducer binding domain HLY11_01075 PF10769 Protein of unknown function (DUF2594) HLY11_01085 PF00196 Bacterial regulatory proteins, luxR family HLY11_01085 PF00072 Response regulator receiver domain HLY11_01090 PF08459 UvrC Helix-hairpin-helix N-terminal HLY11_01090 PF02151 UvrB/uvrC motif HLY11_01090 PF01541 GIY-YIG catalytic domain HLY11_01095 PF01066 CDP-alcohol phosphatidyltransferase HLY11_01115 PF02810 SEC-C motif HLY11_01115 PF03695 Uncharacterised protein family (UPF0149) HLY11_01120 PF03222 Tryptophan/tyrosine permease family HLY11_01125 PF10678 Protein of unknown function (DUF2492) HLY11_01130 PF00210 Ferritin-like domain HLY11_01135 PF13992 YecR-like lipoprotein HLY11_01145 PF10964 Protein of unknown function (DUF2766) HLY11_01150 PF00210 Ferritin-like domain HLY11_01155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_01160 PF00005 ABC transporter HLY11_01165 PF02653 Branched-chain amino acid transport system / permease component HLY11_01170 PF02358 Trehalose-phosphatase HLY11_01175 PF00982 Glycosyltransferase family 20 HLY11_01180 PF00582 Universal stress protein family HLY11_01185 PF05247 Flagellar transcriptional activator (FlhD) HLY11_01190 PF05280 Flagellar transcriptional activator (FlhC) HLY11_01195 PF01618 MotA/TolQ/ExbB proton channel family HLY11_01200 PF13677 Membrane MotB of proton-channel complex MotA/MotB HLY11_01200 PF00691 OmpA family HLY11_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_01205 PF02895 Signal transducing histidine kinase, homodimeric domain HLY11_01205 PF09078 CheY binding HLY11_01205 PF01584 CheW-like domain HLY11_01205 PF01627 Hpt domain HLY11_01210 PF01584 CheW-like domain HLY11_01215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HLY11_01215 PF00672 HAMP domain HLY11_01215 PF02203 Tar ligand binding domain homologue HLY11_01220 PF02203 Tar ligand binding domain homologue HLY11_01220 PF00672 HAMP domain HLY11_01220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HLY11_01225 PF01739 CheR methyltransferase, SAM binding domain HLY11_01225 PF03705 CheR methyltransferase, all-alpha domain HLY11_01230 PF01339 CheB methylesterase HLY11_01230 PF00072 Response regulator receiver domain HLY11_01235 PF00072 Response regulator receiver domain HLY11_01240 PF04344 Chemotaxis phosphatase, CheZ HLY11_01250 PF01966 HD domain HLY11_01250 PF13286 Phosphohydrolase-associated domain HLY11_01255 PF01312 FlhB HrpN YscU SpaS Family HLY11_01260 PF00771 FHIPEP family HLY11_01265 PF06366 Flagellar protein FlhE HLY11_01270 PF07007 Lysozyme inhibitor LprI HLY11_01275 PF05746 DALR anticodon binding domain HLY11_01275 PF03485 Arginyl tRNA synthetase N terminal domain HLY11_01275 PF00750 tRNA synthetases class I (R) HLY11_01280 PF06185 YecM protein HLY11_01285 PF03932 CutC family HLY11_01290 PF03264 NapC/NirT cytochrome c family, N-terminal region HLY11_01295 PF01568 Molydopterin dinucleotide binding domain HLY11_01295 PF00384 Molybdopterin oxidoreductase HLY11_01295 PF18364 Molybdopterin oxidoreductase N-terminal domain HLY11_01300 PF08003 Protein of unknown function (DUF1698) HLY11_01305 PF13649 Methyltransferase domain HLY11_01310 PF01124 MAPEG family HLY11_01315 PF01904 Protein of unknown function DUF72 HLY11_01320 PF00857 Isochorismatase family HLY11_01325 PF02938 GAD domain HLY11_01325 PF00152 tRNA synthetases class II (D, K and N) HLY11_01325 PF01336 OB-fold nucleic acid binding domain HLY11_01330 PF00293 NUDIX domain HLY11_01335 PF01709 Transcriptional regulator HLY11_01340 PF02075 Crossover junction endodeoxyribonuclease RuvC HLY11_01345 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family HLY11_01355 PF01330 RuvA N terminal domain HLY11_01355 PF07499 RuvA, C-terminal domain HLY11_01360 PF17864 RuvB AAA lid domain HLY11_01360 PF05491 RuvB C-terminal winged helix domain HLY11_01360 PF05496 Holliday junction DNA helicase RuvB P-loop domain HLY11_01365 PF00950 ABC 3 transport family HLY11_01370 PF00005 ABC transporter HLY11_01375 PF01297 Zinc-uptake complex component A periplasmic HLY11_01380 PF08525 Opacity-associated protein A N-terminal motif HLY11_01380 PF01476 LysM domain HLY11_01380 PF01551 Peptidase family M23 HLY11_01385 PF03279 Bacterial lipid A biosynthesis acyltransferase HLY11_01390 PF02887 Pyruvate kinase, alpha/beta domain HLY11_01390 PF00224 Pyruvate kinase, barrel domain HLY11_01395 PF01380 SIS domain HLY11_01395 PF01418 Helix-turn-helix domain, rpiR family HLY11_01400 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HLY11_01400 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HLY11_01405 PF00920 Dehydratase family HLY11_01410 PF01081 KDPG and KHG aldolase HLY11_01415 PF02222 ATP-grasp domain HLY11_01420 PF07130 YebG protein HLY11_01425 PF13995 YebF-like protein HLY11_01430 PF04391 Protein of unknown function (DUF533) HLY11_01435 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HLY11_01435 PF00326 Prolyl oligopeptidase family HLY11_01440 PF00929 Exonuclease HLY11_01445 PF00795 Carbon-nitrogen hydrolase HLY11_01450 PF06440 DNA polymerase III, theta subunit HLY11_01455 PF04234 CopC domain HLY11_01460 PF05425 Copper resistance protein D HLY11_01465 PF10709 Protein of unknown function (DUF2511) HLY11_01470 PF00149 Calcineurin-like phosphoesterase HLY11_01475 PF07358 Protein of unknown function (DUF1482) HLY11_01480 PF07351 Protein of unknown function (DUF1480) HLY11_01485 PF01189 16S rRNA methyltransferase RsmB/F HLY11_01485 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HLY11_01485 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HLY11_01490 PF02470 MlaD protein HLY11_01495 PF04403 Paraquat-inducible protein A HLY11_01500 PF13185 GAF domain HLY11_01505 PF04352 ProQ/FINO family HLY11_01505 PF17516 ProQ C-terminal domain HLY11_01510 PF00595 PDZ domain HLY11_01510 PF11818 C-terminal domain of tail specific protease (DUF3340) HLY11_01510 PF17804 Tail specific protease N-terminal domain HLY11_01510 PF03572 Peptidase family S41 HLY11_01515 PF01435 Peptidase family M48 HLY11_01520 PF07690 Major Facilitator Superfamily HLY11_01525 PF01614 Bacterial transcriptional regulator HLY11_01525 PF09339 IclR helix-turn-helix domain HLY11_01530 PF13996 YobH-like protein HLY11_01535 PF13998 MgrB protein HLY11_01540 PF13974 YebO-like protein HLY11_01545 PF10736 Protein of unknown function (DUF2627) HLY11_01550 PF00313 'Cold-shock' DNA-binding domain HLY11_01555 PF13847 Methyltransferase domain HLY11_01560 PF02659 Putative manganese efflux pump HLY11_01565 PF06173 Protein of unknown function (DUF986) HLY11_01570 PF03613 PTS system mannose/fructose/sorbose family IID component HLY11_01575 PF03609 PTS system sorbose-specific iic component HLY11_01580 PF03830 PTS system sorbose subfamily IIB component HLY11_01580 PF03610 PTS system fructose IIA component HLY11_01585 PF03741 Integral membrane protein TerC family HLY11_01585 PF03471 Transporter associated domain HLY11_01590 PF00563 EAL domain HLY11_01590 PF12792 CSS motif domain associated with EAL HLY11_01595 PF03313 Serine dehydratase alpha chain HLY11_01595 PF03315 Serine dehydratase beta chain HLY11_01600 PF00293 NUDIX domain HLY11_01605 PF04715 Anthranilate synthase component I, N terminal region HLY11_01605 PF00425 chorismate binding enzyme HLY11_01610 PF03701 Uncharacterised protein family (UPF0181) HLY11_01615 PF08986 Domain of unknown function (DUF1889) HLY11_01620 PF01042 Endoribonuclease L-PSP HLY11_01625 PF13307 Helicase C-terminal domain HLY11_01625 PF04851 Type III restriction enzyme, res subunit HLY11_01630 PF00814 Glycoprotease family HLY11_01635 PF03843 Outer membrane lipoprotein Slp family HLY11_01640 PF13193 AMP-binding enzyme C-terminal domain HLY11_01640 PF00501 AMP-binding enzyme HLY11_01645 PF00570 HRDC domain HLY11_01645 PF01612 3'-5' exonuclease HLY11_01655 PF00180 Isocitrate/isopropylmalate dehydrogenase HLY11_01660 PF03466 LysR substrate binding domain HLY11_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_01665 PF01810 LysE type translocator HLY11_01670 PF09313 Domain of unknown function (DUF1971) HLY11_01675 PF08956 Domain of unknown function (DUF1869) HLY11_01680 PF04226 Transglycosylase associated protein HLY11_01695 PF13185 GAF domain HLY11_01695 PF00990 Diguanylate cyclase, GGDEF domain HLY11_01700 PF03891 Domain of unknown function (DUF333) HLY11_01705 PF04343 Protein of unknown function, DUF488 HLY11_01710 PF07690 Major Facilitator Superfamily HLY11_01715 PF02311 AraC-like ligand binding domain HLY11_01715 PF12833 Helix-turn-helix domain HLY11_01720 PF04284 Protein of unknown function (DUF441) HLY11_01730 PF04073 Aminoacyl-tRNA editing domain HLY11_01735 PF00990 Diguanylate cyclase, GGDEF domain HLY11_01735 PF17155 Gammaproteobacterial periplasmic sensor domain HLY11_01740 PF17158 Membrane-associated sensor, integral membrane domain HLY11_01740 PF00990 Diguanylate cyclase, GGDEF domain HLY11_01745 PF04285 Protein of unknown function (DUF444) HLY11_01750 PF06798 PrkA serine protein kinase C-terminal domain HLY11_01750 PF08298 PrkA AAA domain HLY11_01755 PF06629 MltA-interacting protein MipA HLY11_01760 PF00248 Aldo/keto reductase family HLY11_01765 PF01263 Aldose 1-epimerase HLY11_01770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HLY11_01770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HLY11_01775 PF01641 SelR domain HLY11_01780 PF07023 Protein of unknown function (DUF1315) HLY11_01785 PF00857 Isochorismatase family HLY11_01790 PF00710 Asparaginase, N-terminal HLY11_01790 PF17763 Glutaminase/Asparaginase C-terminal domain HLY11_01800 PF01343 Peptidase family S49 HLY11_01805 PF00881 Nitroreductase family HLY11_01810 PF02769 AIR synthase related protein, C-terminal domain HLY11_01810 PF00586 AIR synthase related protein, N-terminal domain HLY11_01815 PF01751 Toprim domain HLY11_01815 PF01131 DNA topoisomerase HLY11_01820 PF06889 Protein of unknown function (DUF1266) HLY11_01825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HLY11_01825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HLY11_01830 PF07383 Protein of unknown function (DUF1496) HLY11_01835 PF00293 NUDIX domain HLY11_01840 PF01066 CDP-alcohol phosphatidyltransferase HLY11_01845 PF00581 Rhodanese-like domain HLY11_01850 PF00005 ABC transporter HLY11_01855 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_01860 PF13416 Bacterial extracellular solute-binding protein HLY11_01865 PF02627 Carboxymuconolactone decarboxylase family HLY11_01870 PF09335 SNARE associated Golgi protein HLY11_01880 PF09335 SNARE associated Golgi protein HLY11_01885 PF03372 Endonuclease/Exonuclease/phosphatase family HLY11_01890 PF00202 Aminotransferase class-III HLY11_01895 PF04958 Arginine N-succinyltransferase beta subunit HLY11_01900 PF00171 Aldehyde dehydrogenase family HLY11_01905 PF04996 Succinylarginine dihydrolase HLY11_01910 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HLY11_01915 PF07813 LTXXQ motif family protein HLY11_01920 PF05962 HutD HLY11_01930 PF02540 NAD synthase HLY11_01935 PF04355 SmpA / OmlA family HLY11_01940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_01945 PF02378 Phosphotransferase system, EIIC HLY11_01950 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HLY11_01955 PF07883 Cupin domain HLY11_01955 PF12833 Helix-turn-helix domain HLY11_01960 PF11975 Family 4 glycosyl hydrolase C-terminal domain HLY11_01960 PF02056 Family 4 glycosyl hydrolase HLY11_01965 PF04794 YdjC-like protein HLY11_01970 PF18011 C-terminal domain found in long catalases HLY11_01970 PF06628 Catalase-related immune-responsive HLY11_01970 PF00199 Catalase HLY11_01975 PF10729 Cell division activator CedA HLY11_01990 PF04307 LexA-binding, inner membrane-associated putative hydrolase HLY11_01995 PF13419 Haloacid dehalogenase-like hydrolase HLY11_02000 PF14002 YniB-like protein HLY11_02005 PF03881 Fructosamine kinase HLY11_02010 PF11080 Endoribonuclease GhoS HLY11_02015 PF00294 pfkB family carbohydrate kinase HLY11_02020 PF04338 Protein of unknown function, DUF481 HLY11_02035 PF03129 Anticodon binding domain HLY11_02035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HLY11_02035 PF02824 TGS domain HLY11_02035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HLY11_02040 PF00707 Translation initiation factor IF-3, C-terminal domain HLY11_02040 PF05198 Translation initiation factor IF-3, N-terminal domain HLY11_02045 PF01632 Ribosomal protein L35 HLY11_02050 PF00453 Ribosomal protein L20 HLY11_02060 PF01409 tRNA synthetases class II core domain (F) HLY11_02060 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HLY11_02065 PF03483 B3/4 domain HLY11_02065 PF03147 Ferredoxin-fold anticodon binding domain HLY11_02065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HLY11_02065 PF03484 tRNA synthetase B5 domain HLY11_02065 PF01588 Putative tRNA binding domain HLY11_02070 PF00216 Bacterial DNA-binding protein HLY11_02075 PF01032 FecCD transport family HLY11_02080 PF00255 Glutathione peroxidase HLY11_02085 PF00005 ABC transporter HLY11_02090 PF00877 NlpC/P60 family HLY11_02095 PF00563 EAL domain HLY11_02100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HLY11_02105 PF10636 Hemin uptake protein hemP HLY11_02110 PF00793 DAHP synthetase I family HLY11_02115 PF03618 Kinase/pyrophosphorylase HLY11_02120 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HLY11_02120 PF02896 PEP-utilising enzyme, TIM barrel domain HLY11_02120 PF00391 PEP-utilising enzyme, mobile domain HLY11_02125 PF00501 AMP-binding enzyme HLY11_02125 PF13193 AMP-binding enzyme C-terminal domain HLY11_02135 PF01494 FAD binding domain HLY11_02140 PF01012 Electron transfer flavoprotein domain HLY11_02140 PF00766 Electron transfer flavoprotein FAD-binding domain HLY11_02145 PF01012 Electron transfer flavoprotein domain HLY11_02150 PF02311 AraC-like ligand binding domain HLY11_02150 PF12833 Helix-turn-helix domain HLY11_02155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HLY11_02155 PF02770 Acyl-CoA dehydrogenase, middle domain HLY11_02155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HLY11_02160 PF01144 Coenzyme A transferase HLY11_02165 PF01487 Type I 3-dehydroquinase HLY11_02170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HLY11_02170 PF08501 Shikimate dehydrogenase substrate binding domain HLY11_02175 PF07690 Major Facilitator Superfamily HLY11_02180 PF07690 Major Facilitator Superfamily HLY11_02185 PF08965 Domain of unknown function (DUF1870) HLY11_02195 PF01594 AI-2E family transporter HLY11_02200 PF01565 FAD binding domain HLY11_02200 PF02913 FAD linked oxidases, C-terminal domain HLY11_02200 PF13183 4Fe-4S dicluster domain HLY11_02205 PF03061 Thioesterase superfamily HLY11_02210 PF15930 Domain of unknown function HLY11_02215 PF01521 Iron-sulphur cluster biosynthesis HLY11_02220 PF01458 Uncharacterized protein family (UPF0051) HLY11_02225 PF00005 ABC transporter HLY11_02230 PF01458 Uncharacterized protein family (UPF0051) HLY11_02235 PF00266 Aminotransferase class-V HLY11_02240 PF02657 Fe-S metabolism associated domain HLY11_02245 PF01476 LysM domain HLY11_02245 PF03734 L,D-transpeptidase catalytic domain HLY11_02245 PF17969 L,D-transpeptidase C-terminal domain HLY11_02250 PF04728 Lipoprotein leucine-zipper HLY11_02255 PF02887 Pyruvate kinase, alpha/beta domain HLY11_02255 PF00224 Pyruvate kinase, barrel domain HLY11_02260 PF10965 Protein of unknown function (DUF2767) HLY11_02265 PF12800 4Fe-4S binding domain HLY11_02265 PF13247 4Fe-4S dicluster domain HLY11_02270 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain HLY11_02270 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HLY11_02280 PF13247 4Fe-4S dicluster domain HLY11_02285 PF01292 Prokaryotic cytochrome b561 HLY11_02295 PF13454 FAD-NAD(P)-binding HLY11_02300 PF08803 Putative mono-oxygenase ydhR HLY11_02315 PF16168 Adhesin of bacterial autotransporter system, probable stalk HLY11_02315 PF03212 Pertactin HLY11_02320 PF01554 MatE HLY11_02325 PF00677 Lumazine binding domain HLY11_02335 PF07690 Major Facilitator Superfamily HLY11_02340 PF03466 LysR substrate binding domain HLY11_02340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_02345 PF00356 Bacterial regulatory proteins, lacI family HLY11_02355 PF07690 Major Facilitator Superfamily HLY11_02360 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HLY11_02360 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HLY11_02365 PF00877 NlpC/P60 family HLY11_02370 PF00462 Glutaredoxin HLY11_02375 PF00270 DEAD/DEAH box helicase HLY11_02375 PF08494 DEAD/H associated HLY11_02375 PF00271 Helicase conserved C-terminal domain HLY11_02380 PF00929 Exonuclease HLY11_02385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HLY11_02390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HLY11_02395 PF00440 Bacterial regulatory proteins, tetR family HLY11_02395 PF16925 Tetracyclin repressor-like, C-terminal domain HLY11_02400 PF06945 Protein of unknown function (DUF1289) HLY11_02405 PF00248 Aldo/keto reductase family HLY11_02410 PF00080 Copper/zinc superoxide dismutase (SODC) HLY11_02415 PF04632 Fusaric acid resistance protein family HLY11_02420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_02420 PF00529 HlyD membrane-fusion protein of T1SS HLY11_02425 PF07869 Protein of unknown function (DUF1656) HLY11_02430 PF01047 MarR family HLY11_02435 PF05433 Glycine zipper 2TM domain HLY11_02440 PF03702 Anhydro-N-acetylmuramic acid kinase HLY11_02445 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme HLY11_02450 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HLY11_02450 PF01243 Pyridoxamine 5'-phosphate oxidase HLY11_02455 PF00579 tRNA synthetases class I (W and Y) HLY11_02455 PF01479 S4 domain HLY11_02460 PF08543 Phosphomethylpyrimidine kinase HLY11_02465 PF00043 Glutathione S-transferase, C-terminal domain HLY11_02465 PF02798 Glutathione S-transferase, N-terminal domain HLY11_02470 PF00854 POT family HLY11_02475 PF00730 HhH-GPD superfamily base excision DNA repair protein HLY11_02475 PF00633 Helix-hairpin-helix motif HLY11_02475 PF10576 Iron-sulfur binding domain of endonuclease III HLY11_02480 PF02508 Rnf-Nqr subunit, membrane protein HLY11_02485 PF04205 FMN-binding domain HLY11_02490 PF03116 NQR2, RnfD, RnfE family HLY11_02495 PF10531 SLBB domain HLY11_02495 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HLY11_02495 PF12838 4Fe-4S dicluster domain HLY11_02495 PF13375 RnfC Barrel sandwich hybrid domain HLY11_02500 PF04060 Putative Fe-S cluster HLY11_02505 PF02508 Rnf-Nqr subunit, membrane protein HLY11_02510 PF10754 Protein of unknown function (DUF2569) HLY11_02515 PF05321 Haemolysin expression modulating protein HLY11_02525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HLY11_02525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HLY11_02530 PF00962 Adenosine/AMP deaminase HLY11_02535 PF00155 Aminotransferase class I and II HLY11_02540 PF02378 Phosphotransferase system, EIIC HLY11_02540 PF00367 phosphotransferase system, EIIB HLY11_02545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_02545 PF00356 Bacterial regulatory proteins, lacI family HLY11_02555 PF00440 Bacterial regulatory proteins, tetR family HLY11_02560 PF02837 Glycosyl hydrolases family 2, sugar binding domain HLY11_02560 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HLY11_02560 PF00703 Glycosyl hydrolases family 2 HLY11_02570 PF03573 outer membrane porin, OprD family HLY11_02575 PF06097 Bacterial protein of unknown function (DUF945) HLY11_02580 PF01238 Phosphomannose isomerase type I HLY11_02585 PF05683 Fumarase C-terminus HLY11_02585 PF05681 Fumarate hydratase (Fumerase) HLY11_02590 PF00206 Lyase HLY11_02590 PF10415 Fumarase C C-terminus HLY11_02595 PF05472 DNA replication terminus site-binding protein (Ter protein) HLY11_02600 PF00512 His Kinase A (phospho-acceptor) domain HLY11_02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_02600 PF00672 HAMP domain HLY11_02605 PF00072 Response regulator receiver domain HLY11_02605 PF00486 Transcriptional regulatory protein, C terminal HLY11_02610 PF06942 GlpM protein HLY11_02620 PF13520 Amino acid permease HLY11_02625 PF07338 Protein of unknown function (DUF1471) HLY11_02630 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HLY11_02630 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HLY11_02630 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HLY11_02635 PF02233 NAD(P) transhydrogenase beta subunit HLY11_02645 PF00893 Small Multidrug Resistance protein HLY11_02650 PF00893 Small Multidrug Resistance protein HLY11_02655 PF00089 Trypsin HLY11_02670 PF07690 Major Facilitator Superfamily HLY11_02675 PF03466 LysR substrate binding domain HLY11_02675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_02680 PF00480 ROK family HLY11_02690 PF00654 Voltage gated chloride channel HLY11_02695 PF02613 Nitrate reductase delta subunit HLY11_02700 PF04976 DMSO reductase anchor subunit (DmsC) HLY11_02705 PF13247 4Fe-4S dicluster domain HLY11_02705 PF12800 4Fe-4S binding domain HLY11_02710 PF01568 Molydopterin dinucleotide binding domain HLY11_02710 PF00384 Molybdopterin oxidoreductase HLY11_02710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HLY11_02715 PF01568 Molydopterin dinucleotide binding domain HLY11_02715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HLY11_02715 PF00384 Molybdopterin oxidoreductase HLY11_02720 PF06649 Protein of unknown function (DUF1161) HLY11_02725 PF06788 Uncharacterised protein family (UPF0257) HLY11_02730 PF13302 Acetyltransferase (GNAT) domain HLY11_02735 PF06932 Protein of unknown function (DUF1283) HLY11_02740 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HLY11_02745 PF13378 Enolase C-terminal domain-like HLY11_02745 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HLY11_02750 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_02750 PF00107 Zinc-binding dehydrogenase HLY11_02755 PF00083 Sugar (and other) transporter HLY11_02755 PF07690 Major Facilitator Superfamily HLY11_02760 PF08125 Mannitol dehydrogenase C-terminal domain HLY11_02760 PF01232 Mannitol dehydrogenase Rossmann domain HLY11_02765 PF14001 YdfZ protein HLY11_02770 PF00392 Bacterial regulatory proteins, gntR family HLY11_02770 PF07729 FCD domain HLY11_02775 PF00106 short chain dehydrogenase HLY11_02780 PF01432 Peptidase family M3 HLY11_02785 PF02464 Competence-damaged protein HLY11_02790 PF04076 Bacterial OB fold (BOF) protein HLY11_02795 PF00990 Diguanylate cyclase, GGDEF domain HLY11_02805 PF07690 Major Facilitator Superfamily HLY11_02810 PF00892 EamA-like transporter family HLY11_02815 PF13999 MarB protein HLY11_02820 PF12833 Helix-turn-helix domain HLY11_02825 PF01047 MarR family HLY11_02830 PF01914 MarC family integral membrane protein HLY11_02835 PF07690 Major Facilitator Superfamily HLY11_02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_02845 PF03466 LysR substrate binding domain HLY11_02850 PF00171 Aldehyde dehydrogenase family HLY11_02855 PF04960 Glutaminase HLY11_02860 PF13811 Domain of unknown function (DUF4186) HLY11_02865 PF00990 Diguanylate cyclase, GGDEF domain HLY11_02870 PF01232 Mannitol dehydrogenase Rossmann domain HLY11_02870 PF08125 Mannitol dehydrogenase C-terminal domain HLY11_02875 PF01062 Bestrophin, RFP-TM, chloride channel HLY11_02880 PF13649 Methyltransferase domain HLY11_02885 PF07282 Putative transposase DNA-binding domain HLY11_02885 PF01385 Probable transposase HLY11_02885 PF12323 Helix-turn-helix domain HLY11_02895 PF03992 Antibiotic biosynthesis monooxygenase HLY11_02900 PF01791 DeoC/LacD family aldolase HLY11_02905 PF13407 Periplasmic binding protein domain HLY11_02910 PF02653 Branched-chain amino acid transport system / permease component HLY11_02915 PF02653 Branched-chain amino acid transport system / permease component HLY11_02920 PF00005 ABC transporter HLY11_02925 PF04198 Putative sugar-binding domain HLY11_02930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_02930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_02935 PF13018 Extended Signal Peptide of Type V secretion system HLY11_02940 PF01381 Helix-turn-helix HLY11_02945 PF07804 HipA-like C-terminal domain HLY11_02945 PF13657 HipA N-terminal domain HLY11_02950 PF03797 Autotransporter beta-domain HLY11_02950 PF16168 Adhesin of bacterial autotransporter system, probable stalk HLY11_02950 PF16168 Adhesin of bacterial autotransporter system, probable stalk HLY11_02950 PF03797 Autotransporter beta-domain HLY11_02950 PF13018 Extended Signal Peptide of Type V secretion system HLY11_02950 PF13018 Extended Signal Peptide of Type V secretion system HLY11_02955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HLY11_02975 PF00356 Bacterial regulatory proteins, lacI family HLY11_02980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_02980 PF03466 LysR substrate binding domain HLY11_02985 PF14537 Cytochrome c3 HLY11_02985 PF00890 FAD binding domain HLY11_02995 PF07690 Major Facilitator Superfamily HLY11_03005 PF00419 Fimbrial protein HLY11_03010 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_03010 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_03015 PF00577 Outer membrane usher protein HLY11_03015 PF13954 PapC N-terminal domain HLY11_03015 PF13953 PapC C-terminal domain HLY11_03020 PF00419 Fimbrial protein HLY11_03025 PF00419 Fimbrial protein HLY11_03030 PF09160 FimH, mannose binding HLY11_03035 PF00384 Molybdopterin oxidoreductase HLY11_03040 PF17073 Two-component-system connector protein HLY11_03045 PF12833 Helix-turn-helix domain HLY11_03050 PF00884 Sulfatase HLY11_03055 PF13186 Iron-sulfur cluster-binding domain HLY11_03055 PF04055 Radical SAM superfamily HLY11_03065 PF06472 ABC transporter transmembrane region 2 HLY11_03065 PF00005 ABC transporter HLY11_03070 PF07715 TonB-dependent Receptor Plug Domain HLY11_03075 PF05193 Peptidase M16 inactive domain HLY11_03075 PF00675 Insulinase (Peptidase family M16) HLY11_03080 PF00282 Pyridoxal-dependent decarboxylase conserved domain HLY11_03085 PF13520 Amino acid permease HLY11_03095 PF00990 Diguanylate cyclase, GGDEF domain HLY11_03100 PF00990 Diguanylate cyclase, GGDEF domain HLY11_03100 PF00563 EAL domain HLY11_03100 PF13426 PAS domain HLY11_03105 PF01427 D-ala-D-ala dipeptidase HLY11_03110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_03115 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03120 PF12911 N-terminal TM domain of oligopeptide transport permease C HLY11_03120 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_03125 PF00005 ABC transporter HLY11_03130 PF00005 ABC transporter HLY11_03130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_03135 PF02566 OsmC-like protein HLY11_03140 PF10684 Putative biofilm-dependent modulation protein HLY11_03145 PF08136 30S ribosomal protein subunit S22 family HLY11_03150 PF00390 Malic enzyme, N-terminal domain HLY11_03150 PF03949 Malic enzyme, NAD binding domain HLY11_03155 PF00107 Zinc-binding dehydrogenase HLY11_03155 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_03160 PF01381 Helix-turn-helix HLY11_03165 PF01292 Prokaryotic cytochrome b561 HLY11_03170 PF13247 4Fe-4S dicluster domain HLY11_03170 PF12800 4Fe-4S binding domain HLY11_03170 PF09163 Formate dehydrogenase N, transmembrane HLY11_03180 PF00892 EamA-like transporter family HLY11_03185 PF00267 Gram-negative porin HLY11_03200 PF07690 Major Facilitator Superfamily HLY11_03205 PF01568 Molydopterin dinucleotide binding domain HLY11_03205 PF00384 Molybdopterin oxidoreductase HLY11_03205 PF14710 Respiratory nitrate reductase alpha N-terminal HLY11_03210 PF14711 Respiratory nitrate reductase beta C-terminal HLY11_03210 PF13247 4Fe-4S dicluster domain HLY11_03215 PF02613 Nitrate reductase delta subunit HLY11_03220 PF02665 Nitrate reductase gamma subunit HLY11_03225 PF02567 Phenazine biosynthesis-like protein HLY11_03230 PF00797 N-acetyltransferase HLY11_03235 PF01613 Flavin reductase like domain HLY11_03270 PF13417 Glutathione S-transferase, N-terminal domain HLY11_03275 PF00324 Amino acid permease HLY11_03285 PF07715 TonB-dependent Receptor Plug Domain HLY11_03285 PF00593 TonB dependent receptor HLY11_03290 PF07729 FCD domain HLY11_03290 PF00392 Bacterial regulatory proteins, gntR family HLY11_03295 PF00107 Zinc-binding dehydrogenase HLY11_03295 PF16884 N-terminal domain of oxidoreductase HLY11_03300 PF00583 Acetyltransferase (GNAT) family HLY11_03305 PF04657 Putative inner membrane exporter, YdcZ HLY11_03310 PF10735 Protein of unknown function (DUF2526) HLY11_03315 PF10753 Toxin GhoT_OrtT HLY11_03325 PF00171 Aldehyde dehydrogenase family HLY11_03330 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03335 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03340 PF00005 ABC transporter HLY11_03340 PF08402 TOBE domain HLY11_03345 PF13416 Bacterial extracellular solute-binding protein HLY11_03350 PF00155 Aminotransferase class I and II HLY11_03350 PF00392 Bacterial regulatory proteins, gntR family HLY11_03355 PF01381 Helix-turn-helix HLY11_03355 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system HLY11_03360 PF07927 HicA toxin of bacterial toxin-antitoxin, HLY11_03365 PF10829 Protein of unknown function (DUF2554) HLY11_03370 PF01136 Peptidase family U32 HLY11_03370 PF12392 Collagenase HLY11_03375 PF01381 Helix-turn-helix HLY11_03375 PF07883 Cupin domain HLY11_03380 PF03594 Benzoate membrane transport protein HLY11_03385 PF11769 Protein of unknown function (DUF3313) HLY11_03390 PF03848 Tellurite resistance protein TehB HLY11_03395 PF03595 Voltage-dependent anion channel HLY11_03400 PF18836 Beta solenoid repeat from YDCK HLY11_03405 PF13302 Acetyltransferase (GNAT) domain HLY11_03410 PF04325 Protein of unknown function (DUF465) HLY11_03415 PF04349 Periplasmic glucan biosynthesis protein, MdoG HLY11_03420 PF07063 Domain of unknown function (DUF1338) HLY11_03425 PF03466 LysR substrate binding domain HLY11_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_03430 PF02203 Tar ligand binding domain homologue HLY11_03430 PF00672 HAMP domain HLY11_03430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HLY11_03435 PF01848 Hok/gef family HLY11_03445 PF01292 Prokaryotic cytochrome b561 HLY11_03450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HLY11_03450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HLY11_03455 PF00171 Aldehyde dehydrogenase family HLY11_03460 PF02698 DUF218 domain HLY11_03465 PF00271 Helicase conserved C-terminal domain HLY11_03465 PF00270 DEAD/DEAH box helicase HLY11_03465 PF11898 Domain of unknown function (DUF3418) HLY11_03465 PF04408 Helicase associated domain (HA2) HLY11_03465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HLY11_03470 PF02525 Flavodoxin-like fold HLY11_03475 PF00782 Dual specificity phosphatase, catalytic domain HLY11_03480 PF12147 Putative methyltransferase HLY11_03480 PF12146 Serine aminopeptidase, S33 HLY11_03490 PF01066 CDP-alcohol phosphatidyltransferase HLY11_03495 PF10971 Protein of unknown function (DUF2773) HLY11_03500 PF00248 Aldo/keto reductase family HLY11_03510 PF07027 Protein of unknown function (DUF1318) HLY11_03515 PF13617 YnbE-like lipoprotein HLY11_03520 PF11739 Dicarboxylate transport HLY11_03525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HLY11_03525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HLY11_03530 PF03724 META domain HLY11_03535 PF03891 Domain of unknown function (DUF333) HLY11_03540 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HLY11_03540 PF10371 Domain of unknown function HLY11_03540 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HLY11_03540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_03540 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HLY11_03545 PF00267 Gram-negative porin HLY11_03550 PF00582 Universal stress protein family HLY11_03555 PF01171 PP-loop family HLY11_03560 PF03880 DbpA RNA binding domain HLY11_03560 PF00270 DEAD/DEAH box helicase HLY11_03560 PF00271 Helicase conserved C-terminal domain HLY11_03565 PF01544 CorA-like Mg2+ transporter protein HLY11_03570 PF00990 Diguanylate cyclase, GGDEF domain HLY11_03570 PF08448 PAS fold HLY11_03575 PF01713 Smr domain HLY11_03580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_03580 PF03466 LysR substrate binding domain HLY11_03585 PF07687 Peptidase dimerisation domain HLY11_03585 PF01546 Peptidase family M20/M25/M40 HLY11_03590 PF01546 Peptidase family M20/M25/M40 HLY11_03595 PF03806 AbgT putative transporter family HLY11_03600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HLY11_03600 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HLY11_03605 PF00027 Cyclic nucleotide-binding domain HLY11_03605 PF00325 Bacterial regulatory proteins, crp family HLY11_03610 PF00582 Universal stress protein family HLY11_03615 PF10749 Protein of unknown function (DUF2534) HLY11_03620 PF00924 Mechanosensitive ion channel HLY11_03625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_03630 PF00246 Zinc carboxypeptidase HLY11_03635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HLY11_03635 PF13378 Enolase C-terminal domain-like HLY11_03640 PF08534 Redoxin HLY11_03650 PF18024 Helix-turn-helix domain HLY11_03650 PF13188 PAS domain HLY11_03650 PF00158 Sigma-54 interaction domain HLY11_03655 PF05128 Domain of unknown function (DUF697) HLY11_03660 PF04317 YcjX-like family, DUF463 HLY11_03665 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_03665 PF00356 Bacterial regulatory proteins, lacI family HLY11_03670 PF09381 Outer membrane protein G (OmpG) HLY11_03675 PF03459 TOBE domain HLY11_03675 PF00005 ABC transporter HLY11_03675 PF17912 MalK OB fold domain HLY11_03680 PF13419 Haloacid dehalogenase-like hydrolase HLY11_03685 PF03636 Glycosyl hydrolase family 65, N-terminal domain HLY11_03685 PF03632 Glycosyl hydrolase family 65 central catalytic domain HLY11_03685 PF03633 Glycosyl hydrolase family 65, C-terminal domain HLY11_03690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HLY11_03690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HLY11_03695 PF01261 Xylose isomerase-like TIM barrel HLY11_03700 PF00107 Zinc-binding dehydrogenase HLY11_03705 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03710 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03715 PF01547 Bacterial extracellular solute-binding protein HLY11_03720 PF00128 Alpha amylase, catalytic domain HLY11_03725 PF00581 Rhodanese-like domain HLY11_03730 PF09584 Phage shock protein PspD (Phageshock_PspD) HLY11_03735 PF04024 PspC domain HLY11_03740 PF06667 Phage shock protein B HLY11_03745 PF04012 PspA/IM30 family HLY11_03750 PF00158 Sigma-54 interaction domain HLY11_03750 PF02954 Bacterial regulatory protein, Fis family HLY11_03755 PF00202 Aminotransferase class-III HLY11_03760 PF01266 FAD dependent oxidoreductase HLY11_03765 PF00171 Aldehyde dehydrogenase family HLY11_03770 PF07883 Cupin domain HLY11_03770 PF01381 Helix-turn-helix HLY11_03775 PF07722 Peptidase C26 HLY11_03780 PF00120 Glutamine synthetase, catalytic domain HLY11_03790 PF00324 Amino acid permease HLY11_03795 PF10820 Protein of unknown function (DUF2543) HLY11_03800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_03805 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03810 PF12911 N-terminal TM domain of oligopeptide transport permease C HLY11_03810 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_03815 PF00005 ABC transporter HLY11_03815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_03820 PF00005 ABC transporter HLY11_03825 PF04480 Protein of unknown function (DUF559) HLY11_03840 PF00773 RNB domain HLY11_03840 PF08206 Ribonuclease B OB domain HLY11_03840 PF00575 S1 RNA binding domain HLY11_03840 PF17876 Cold shock domain HLY11_03850 PF00563 EAL domain HLY11_03850 PF13426 PAS domain HLY11_03850 PF00990 Diguanylate cyclase, GGDEF domain HLY11_03860 PF08220 DeoR-like helix-turn-helix domain HLY11_03860 PF00455 DeoR C terminal sensor domain HLY11_03865 PF05433 Glycine zipper 2TM domain HLY11_03870 PF01253 Translation initiation factor SUI1 HLY11_03875 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HLY11_03880 PF18073 Rubredoxin metal binding domain HLY11_03885 PF06305 Lipopolysaccharide assembly protein A domain HLY11_03890 PF01569 PAP2 superfamily HLY11_03895 PF00925 GTP cyclohydrolase II HLY11_03900 PF00694 Aconitase C-terminal domain HLY11_03900 PF00330 Aconitase family (aconitate hydratase) HLY11_03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_03920 PF03466 LysR substrate binding domain HLY11_03925 PF08272 Topoisomerase I zinc-ribbon-like HLY11_03925 PF01131 DNA topoisomerase HLY11_03925 PF01751 Toprim domain HLY11_03925 PF01396 Topoisomerase DNA binding C4 zinc finger HLY11_03930 PF10692 Protein of unknown function (DUF2498) HLY11_03935 PF08496 Peptidase family S49 N-terminal HLY11_03935 PF01343 Peptidase family S49 HLY11_03940 PF00106 short chain dehydrogenase HLY11_03945 PF12557 Cob(I)alamin adenosyltransferase N terminal HLY11_03945 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HLY11_03950 PF01479 S4 domain HLY11_03950 PF00849 RNA pseudouridylate synthase HLY11_03955 PF01300 Telomere recombination HLY11_03960 PF02811 PHP domain HLY11_03965 PF08255 Trp-operon Leader Peptide HLY11_03970 PF00425 chorismate binding enzyme HLY11_03970 PF04715 Anthranilate synthase component I, N terminal region HLY11_03975 PF00117 Glutamine amidotransferase class-I HLY11_03975 PF02885 Glycosyl transferase family, helical bundle domain HLY11_03975 PF00591 Glycosyl transferase family, a/b domain HLY11_03980 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HLY11_03980 PF00218 Indole-3-glycerol phosphate synthase HLY11_03985 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_03990 PF00290 Tryptophan synthase alpha chain HLY11_03995 PF10685 Stress-induced bacterial acidophilic repeat motif HLY11_04000 PF05974 Domain of unknown function (DUF892) HLY11_04005 PF05974 Domain of unknown function (DUF892) HLY11_04010 PF03922 OmpW family HLY11_04025 PF04279 Intracellular septation protein A HLY11_04030 PF03061 Thioesterase superfamily HLY11_04035 PF03544 Gram-negative bacterial TonB protein C-terminal HLY11_04040 PF03795 YCII-related domain HLY11_04045 PF02254 TrkA-N domain HLY11_04045 PF07885 Ion channel HLY11_04055 PF13396 Phospholipase_D-nuclease N-terminal HLY11_04055 PF13091 PLD-like domain HLY11_04060 PF04269 Protein of unknown function, DUF440 HLY11_04065 PF00027 Cyclic nucleotide-binding domain HLY11_04065 PF00520 Ion transport protein HLY11_04070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_04070 PF00005 ABC transporter HLY11_04075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_04075 PF00005 ABC transporter HLY11_04080 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_04080 PF12911 N-terminal TM domain of oligopeptide transport permease C HLY11_04085 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_04090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_04100 PF01914 MarC family integral membrane protein HLY11_04105 PF00171 Aldehyde dehydrogenase family HLY11_04105 PF00465 Iron-containing alcohol dehydrogenase HLY11_04115 PF00265 Thymidine kinase HLY11_04120 PF00816 H-NS histone family HLY11_04125 PF00483 Nucleotidyl transferase HLY11_04130 PF00072 Response regulator receiver domain HLY11_04135 PF01734 Patatin-like phospholipase HLY11_04140 PF02810 SEC-C motif HLY11_04145 PF00551 Formyl transferase HLY11_04145 PF01842 ACT domain HLY11_04160 PF02665 Nitrate reductase gamma subunit HLY11_04165 PF02613 Nitrate reductase delta subunit HLY11_04170 PF13247 4Fe-4S dicluster domain HLY11_04170 PF14711 Respiratory nitrate reductase beta C-terminal HLY11_04175 PF01568 Molydopterin dinucleotide binding domain HLY11_04175 PF00384 Molybdopterin oxidoreductase HLY11_04175 PF14710 Respiratory nitrate reductase alpha N-terminal HLY11_04180 PF07690 Major Facilitator Superfamily HLY11_04185 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HLY11_04185 PF00672 HAMP domain HLY11_04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_04185 PF07730 Histidine kinase HLY11_04190 PF00196 Bacterial regulatory proteins, luxR family HLY11_04190 PF00072 Response regulator receiver domain HLY11_04195 PF11924 Inverse autotransporter, beta-domain HLY11_04200 PF02635 DsrE/DsrF-like family HLY11_04205 PF04752 ChaC-like protein HLY11_04210 PF06150 ChaB HLY11_04215 PF01699 Sodium/calcium exchanger protein HLY11_04220 PF13940 Toxin Ldr, type I toxin-antitoxin system HLY11_04225 PF00793 DAHP synthetase I family HLY11_04230 PF13369 Transglutaminase-like superfamily HLY11_04235 PF04247 Invasion gene expression up-regulator, SirB HLY11_04240 PF17827 PrmC N-terminal domain HLY11_04240 PF13847 Methyltransferase domain HLY11_04245 PF03462 PCRF domain HLY11_04245 PF00472 RF-1 domain HLY11_04250 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HLY11_04250 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HLY11_04250 PF01488 Shikimate / quinate 5-dehydrogenase HLY11_04255 PF03550 Outer membrane lipoprotein LolB HLY11_04260 PF08544 GHMP kinases C terminal HLY11_04260 PF00288 GHMP kinases N terminal domain HLY11_04265 PF14572 Phosphoribosyl synthetase-associated domain HLY11_04265 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HLY11_04270 PF00916 Sulfate permease family HLY11_04270 PF01740 STAS domain HLY11_04275 PF10762 Protein of unknown function (DUF2583) HLY11_04280 PF01195 Peptidyl-tRNA hydrolase HLY11_04285 PF01926 50S ribosome-binding GTPase HLY11_04285 PF06071 Protein of unknown function (DUF933) HLY11_04290 PF03212 Pertactin HLY11_04290 PF03797 Autotransporter beta-domain HLY11_04300 PF02954 Bacterial regulatory protein, Fis family HLY11_04300 PF00989 PAS fold HLY11_04300 PF00158 Sigma-54 interaction domain HLY11_04305 PF02733 Dak1 domain HLY11_04310 PF02734 DAK2 domain HLY11_04315 PF00381 PTS HPr component phosphorylation site HLY11_04315 PF00391 PEP-utilising enzyme, mobile domain HLY11_04315 PF03610 PTS system fructose IIA component HLY11_04315 PF05524 PEP-utilising enzyme, N-terminal HLY11_04320 PF01204 Trehalase HLY11_04330 PF04226 Transglycosylase associated protein HLY11_04335 PF07317 Flagellar regulator YcgR HLY11_04335 PF07238 PilZ domain HLY11_04340 PF01464 Transglycosylase SLT domain HLY11_04345 PF02016 LD-carboxypeptidase N-terminal domain HLY11_04345 PF17676 LD-carboxypeptidase C-terminal domain HLY11_04350 PF00999 Sodium/hydrogen exchanger family HLY11_04350 PF03471 Transporter associated domain HLY11_04350 PF02080 TrkA-C domain HLY11_04365 PF01168 Alanine racemase, N-terminal domain HLY11_04365 PF00842 Alanine racemase, C-terminal domain HLY11_04370 PF01266 FAD dependent oxidoreductase HLY11_04375 PF04293 SpoVR like protein HLY11_04380 PF07840 FadR C-terminal domain HLY11_04380 PF00392 Bacterial regulatory proteins, gntR family HLY11_04385 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HLY11_04390 PF02600 Disulfide bond formation protein DsbB HLY11_04395 PF13438 Domain of unknown function (DUF4113) HLY11_04395 PF00817 impB/mucB/samB family HLY11_04395 PF11799 impB/mucB/samB family C-terminal domain HLY11_04395 PF11798 IMS family HHH motif HLY11_04400 PF00717 Peptidase S24-like HLY11_04405 PF06109 Haemolysin E (HlyE) HLY11_04410 PF03692 Putative zinc- or iron-chelating domain HLY11_04415 PF01557 Fumarylacetoacetate (FAA) hydrolase family HLY11_04420 PF05166 YcgL domain HLY11_04425 PF04151 Bacterial pre-peptidase C-terminal domain HLY11_04430 PF05666 Fels-1 Prophage Protein-like HLY11_04435 PF03775 Septum formation inhibitor MinC, C-terminal domain HLY11_04435 PF05209 Septum formation inhibitor MinC, N-terminal domain HLY11_04440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HLY11_04445 PF03776 Septum formation topological specificity factor MinE HLY11_04465 PF13436 Glycine-zipper domain HLY11_04470 PF16456 YmgD protein HLY11_04485 PF12792 CSS motif domain associated with EAL HLY11_04485 PF00563 EAL domain HLY11_04495 PF10798 Biofilm development protein YmgB/AriR HLY11_04505 PF10798 Biofilm development protein YmgB/AriR HLY11_04510 PF00563 EAL domain HLY11_04510 PF04940 Sensors of blue-light using FAD HLY11_04515 PF13411 MerR HTH family regulatory protein HLY11_04520 PF07166 Protein of unknown function (DUF1398) HLY11_04535 PF00180 Isocitrate/isopropylmalate dehydrogenase HLY11_04550 PF00849 RNA pseudouridylate synthase HLY11_04555 PF00293 NUDIX domain HLY11_04565 PF04356 Protein of unknown function (DUF489) HLY11_04570 PF08328 Adenylosuccinate lyase C-terminal HLY11_04570 PF00206 Lyase HLY11_04575 PF00072 Response regulator receiver domain HLY11_04575 PF00486 Transcriptional regulatory protein, C terminal HLY11_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_04580 PF08918 PhoQ Sensor HLY11_04585 PF08007 Cupin superfamily protein HLY11_04590 PF07687 Peptidase dimerisation domain HLY11_04590 PF01546 Peptidase family M20/M25/M40 HLY11_04595 PF08402 TOBE domain HLY11_04595 PF00005 ABC transporter HLY11_04600 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_04605 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_04610 PF13416 Bacterial extracellular solute-binding protein HLY11_04615 PF02146 Sir2 family HLY11_04620 PF00480 ROK family HLY11_04625 PF02687 FtsX-like permease family HLY11_04625 PF12704 MacB-like periplasmic core domain HLY11_04630 PF00005 ABC transporter HLY11_04635 PF12704 MacB-like periplasmic core domain HLY11_04635 PF02687 FtsX-like permease family HLY11_04640 PF01757 Acyltransferase family HLY11_04645 PF00270 DEAD/DEAH box helicase HLY11_04645 PF03461 TRCF domain HLY11_04645 PF00271 Helicase conserved C-terminal domain HLY11_04645 PF02559 CarD-like/TRCF domain HLY11_04645 PF17757 UvrB interaction domain HLY11_04650 PF03734 L,D-transpeptidase catalytic domain HLY11_04650 PF17969 L,D-transpeptidase C-terminal domain HLY11_04650 PF01476 LysM domain HLY11_04655 PF07338 Protein of unknown function (DUF1471) HLY11_04660 PF00440 Bacterial regulatory proteins, tetR family HLY11_04665 PF05433 Glycine zipper 2TM domain HLY11_04670 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_04675 PF05728 Uncharacterised protein family (UPF0227) HLY11_04680 PF00933 Glycosyl hydrolase family 3 N terminal domain HLY11_04685 PF01636 Phosphotransferase enzyme family HLY11_04690 PF13036 Peptidoglycan-synthase activator LpoB HLY11_04695 PF07233 Protein of unknown function (DUF1425) HLY11_04700 PF01230 HIT domain HLY11_04705 PF07715 TonB-dependent Receptor Plug Domain HLY11_04705 PF00593 TonB dependent receptor HLY11_04710 PF02378 Phosphotransferase system, EIIC HLY11_04710 PF00367 phosphotransferase system, EIIB HLY11_04715 PF01026 TatD related DNase HLY11_04720 PF09115 DNA polymerase III, delta subunit, C terminal HLY11_04725 PF02223 Thymidylate kinase HLY11_04730 PF02618 YceG-like family HLY11_04735 PF01063 Amino-transferase class IV HLY11_04740 PF00109 Beta-ketoacyl synthase, N-terminal domain HLY11_04740 PF02801 Beta-ketoacyl synthase, C-terminal domain HLY11_04745 PF00550 Phosphopantetheine attachment site HLY11_04755 PF00698 Acyl transferase domain HLY11_04760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HLY11_04760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HLY11_04765 PF02504 Fatty acid synthesis protein HLY11_04770 PF01783 Ribosomal L32p protein family HLY11_04775 PF02620 Large ribosomal RNA subunit accumulation protein YceD HLY11_04780 PF02545 Maf-like protein HLY11_04785 PF00849 RNA pseudouridylate synthase HLY11_04785 PF01479 S4 domain HLY11_04790 PF12111 Polyribonucleotide phosphorylase C terminal HLY11_04790 PF10150 Ribonuclease E/G family HLY11_04790 PF00575 S1 RNA binding domain HLY11_04805 PF00669 Bacterial flagellin N-terminal helical region HLY11_04810 PF00460 Flagella basal body rod protein HLY11_04810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HLY11_04815 PF10135 Rod binding protein HLY11_04815 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HLY11_04820 PF02119 Flagellar P-ring protein HLY11_04825 PF02107 Flagellar L-ring protein HLY11_04830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HLY11_04830 PF00460 Flagella basal body rod protein HLY11_04835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HLY11_04835 PF00460 Flagella basal body rod protein HLY11_04840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HLY11_04840 PF00460 Flagella basal body rod protein HLY11_04840 PF07559 Flagellar basal body protein FlaE HLY11_04845 PF13861 FlgD Tudor-like domain HLY11_04845 PF13860 FlgD Ig-like domain HLY11_04845 PF03963 Flagellar hook capping protein - N-terminal region HLY11_04850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HLY11_04850 PF00460 Flagella basal body rod protein HLY11_04855 PF00460 Flagella basal body rod protein HLY11_04860 PF13144 Chaperone for flagella basal body P-ring formation HLY11_04865 PF04316 Anti-sigma-28 factor, FlgM HLY11_04870 PF05130 FlgN protein HLY11_04875 PF03023 Lipid II flippase MurJ HLY11_04880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HLY11_04885 PF04337 Protein of unknown function, DUF480 HLY11_04890 PF13302 Acetyltransferase (GNAT) domain HLY11_04895 PF07690 Major Facilitator Superfamily HLY11_04900 PF13417 Glutathione S-transferase, N-terminal domain HLY11_04900 PF04399 Glutaredoxin 2, C terminal domain HLY11_04905 PF07273 Protein of unknown function (DUF1439) HLY11_04910 PF01979 Amidohydrolase family HLY11_04915 PF06183 DinI-like family HLY11_04920 PF13991 BssS protein family HLY11_04925 PF01266 FAD dependent oxidoreductase HLY11_04930 PF10968 Protein of unknown function (DUF2770) HLY11_04935 PF01292 Prokaryotic cytochrome b561 HLY11_04940 PF04264 YceI-like domain HLY11_04950 PF03279 Bacterial lipid A biosynthesis acyltransferase HLY11_04955 PF07690 Major Facilitator Superfamily HLY11_04960 PF13984 MsyB protein HLY11_04965 PF07119 Protein of unknown function (DUF1375) HLY11_04970 PF00535 Glycosyl transferase family 2 HLY11_04975 PF04349 Periplasmic glucan biosynthesis protein, MdoG HLY11_04980 PF01757 Acyltransferase family HLY11_04985 PF13091 PLD-like domain HLY11_04990 PF01661 Macro domain HLY11_05000 PF10610 Thin aggregative fimbriae synthesis protein HLY11_05005 PF07012 Curlin associated repeat HLY11_05010 PF07012 Curlin associated repeat HLY11_05015 PF00196 Bacterial regulatory proteins, luxR family HLY11_05020 PF10627 Curli assembly protein CsgE HLY11_05025 PF10614 Type VIII secretion system (T8SS), CsgF protein HLY11_05030 PF03783 Curli production assembly/transport component CsgG HLY11_05035 PF06496 Protein of unknown function (DUF1097) HLY11_05040 PF02613 Nitrate reductase delta subunit HLY11_05045 PF02811 PHP domain HLY11_05050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HLY11_05070 PF06755 CbtA_toxin of type IV toxin-antitoxin system HLY11_05075 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A HLY11_05085 PF04002 RadC-like JAB domain HLY11_05090 PF03230 Antirestriction protein HLY11_05100 PF06067 Domain of unknown function (DUF932) HLY11_05125 PF08220 DeoR-like helix-turn-helix domain HLY11_05125 PF13280 WYL domain HLY11_05130 PF01926 50S ribosome-binding GTPase HLY11_05140 PF00486 Transcriptional regulatory protein, C terminal HLY11_05140 PF00072 Response regulator receiver domain HLY11_05165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_05165 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_05170 PF13953 PapC C-terminal domain HLY11_05170 PF00577 Outer membrane usher protein HLY11_05170 PF13954 PapC N-terminal domain HLY11_05215 PF13148 Protein of unknown function (DUF3987) HLY11_05235 PF01797 Transposase IS200 like HLY11_05270 PF00005 ABC transporter HLY11_05285 PF00109 Beta-ketoacyl synthase, N-terminal domain HLY11_05285 PF02801 Beta-ketoacyl synthase, C-terminal domain HLY11_05290 PF08669 Glycine cleavage T-protein C-terminal barrel domain HLY11_05290 PF01571 Aminomethyltransferase folate-binding domain HLY11_05300 PF07977 FabA-like domain HLY11_05305 PF00106 short chain dehydrogenase HLY11_05310 PF01648 4'-phosphopantetheinyl transferase superfamily HLY11_05315 PF08479 POTRA domain, ShlB-type HLY11_05315 PF17287 POTRA domain HLY11_05315 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HLY11_05320 PF04829 Pre-toxin domain with VENN motif HLY11_05320 PF13332 Hemagglutinin repeat HLY11_05320 PF05860 haemagglutination activity domain HLY11_05320 PF13018 Extended Signal Peptide of Type V secretion system HLY11_05330 PF16970 Type-1 fimbrial protein, A HLY11_05335 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_05335 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_05340 PF13953 PapC C-terminal domain HLY11_05340 PF13954 PapC N-terminal domain HLY11_05340 PF00577 Outer membrane usher protein HLY11_05350 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_05350 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_05360 PF00486 Transcriptional regulatory protein, C terminal HLY11_05370 PF00563 EAL domain HLY11_05370 PF12792 CSS motif domain associated with EAL HLY11_05375 PF17158 Membrane-associated sensor, integral membrane domain HLY11_05375 PF00990 Diguanylate cyclase, GGDEF domain HLY11_05385 PF14883 Hypothetical glycosyl hydrolase family 13 HLY11_05385 PF01522 Polysaccharide deacetylase HLY11_05390 PF00535 Glycosyl transferase family 2 HLY11_05395 PF13994 PgaD-like protein HLY11_05400 PF02562 PhoH-like protein HLY11_05405 PF04261 Dyp-type peroxidase family HLY11_05410 PF09375 Imelysin HLY11_05410 PF13473 Cupredoxin-like domain HLY11_05415 PF03239 Iron permease FTR1 family HLY11_05420 PF00474 Sodium:solute symporter family HLY11_05425 PF00171 Aldehyde dehydrogenase family HLY11_05425 PF01619 Proline dehydrogenase HLY11_05425 PF14850 DNA-binding domain of Proline dehydrogenase HLY11_05425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HLY11_05430 PF00440 Bacterial regulatory proteins, tetR family HLY11_05430 PF08362 YcdC-like protein, C-terminal region HLY11_05435 PF00296 Luciferase-like monooxygenase HLY11_05440 PF00857 Isochorismatase family HLY11_05445 PF01042 Endoribonuclease L-PSP HLY11_05450 PF12697 Alpha/beta hydrolase family HLY11_05455 PF00881 Nitroreductase family HLY11_05460 PF01613 Flavin reductase like domain HLY11_05465 PF00860 Permease family HLY11_05470 PF10685 Stress-induced bacterial acidophilic repeat motif HLY11_05475 PF03358 NADPH-dependent FMN reductase HLY11_05480 PF13993 YccJ-like protein HLY11_05485 PF00328 Histidine phosphatase superfamily (branch 2) HLY11_05495 PF01556 DnaJ C terminal domain HLY11_05495 PF00226 DnaJ domain HLY11_05505 PF02613 Nitrate reductase delta subunit HLY11_05510 PF00384 Molybdopterin oxidoreductase HLY11_05510 PF18364 Molybdopterin oxidoreductase N-terminal domain HLY11_05510 PF01568 Molydopterin dinucleotide binding domain HLY11_05515 PF03264 NapC/NirT cytochrome c family, N-terminal region HLY11_05520 PF00486 Transcriptional regulatory protein, C terminal HLY11_05520 PF00072 Response regulator receiver domain HLY11_05525 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_05530 PF00672 HAMP domain HLY11_05530 PF00072 Response regulator receiver domain HLY11_05530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_05530 PF00512 His Kinase A (phospho-acceptor) domain HLY11_05530 PF01627 Hpt domain HLY11_05535 PF12801 4Fe-4S binding domain HLY11_05540 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system HLY11_05545 PF15939 Putative antitoxin of bacterial toxin-antitoxin system HLY11_05555 PF00313 'Cold-shock' DNA-binding domain HLY11_05560 PF00313 'Cold-shock' DNA-binding domain HLY11_05565 PF00328 Histidine phosphatase superfamily (branch 2) HLY11_05570 PF08173 Membrane bound YbgT-like protein HLY11_05575 PF02322 Cytochrome bd terminal oxidase subunit II HLY11_05580 PF01654 Cytochrome bd terminal oxidase subunit I HLY11_05585 PF04809 HupH hydrogenase expression protein, C-terminal conserved region HLY11_05590 PF07449 Hydrogenase-1 expression protein HyaE HLY11_05595 PF01750 Hydrogenase maturation protease HLY11_05600 PF01292 Prokaryotic cytochrome b561 HLY11_05605 PF00374 Nickel-dependent hydrogenase HLY11_05610 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HLY11_05610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HLY11_05620 PF01027 Inhibitor of apoptosis-promoting Bax1 HLY11_05625 PF04358 DsrC like protein HLY11_05630 PF00708 Acylphosphatase HLY11_05635 PF17785 PUA-like domain HLY11_05635 PF10672 S-adenosylmethionine-dependent methyltransferase HLY11_05640 PF08755 Hemimethylated DNA-binding protein YccV like HLY11_05645 PF13380 CoA binding domain HLY11_05650 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HLY11_05655 PF02142 MGS-like domain HLY11_05660 PF13361 UvrD-like helicase C-terminal domain HLY11_05660 PF00580 UvrD/REP helicase N-terminal domain HLY11_05660 PF12462 DNA helicase IV / RNA helicase N terminal HLY11_05665 PF03733 Inner membrane component domain HLY11_05670 PF12805 FUSC-like inner membrane protein yccS HLY11_05675 PF04994 TfoX C-terminal domain HLY11_05675 PF04993 TfoX N-terminal domain HLY11_05680 PF03846 Cell division inhibitor SulA HLY11_05685 PF01389 OmpA-like transmembrane domain HLY11_05685 PF00691 OmpA family HLY11_05690 PF06303 MatP N-terminal domain HLY11_05690 PF17414 MatP C-terminal ribbon-helix-helix domain HLY11_05695 PF05362 Lon protease (S16) C-terminal proteolytic domain HLY11_05695 PF13654 AAA domain HLY11_05700 PF07977 FabA-like domain HLY11_05705 PF04957 Ribosome modulation factor HLY11_05710 PF03886 ABC-type transport auxiliary lipoprotein component HLY11_05715 PF02470 MlaD protein HLY11_05720 PF04403 Paraquat-inducible protein A HLY11_05725 PF00005 ABC transporter HLY11_05725 PF16326 ABC transporter C-terminal domain HLY11_05725 PF12848 ABC transporter HLY11_05730 PF01170 Putative RNA methylase family UPF0020 HLY11_05730 PF02926 THUMP domain HLY11_05730 PF10672 S-adenosylmethionine-dependent methyltransferase HLY11_05735 PF00111 2Fe-2S iron-sulfur cluster binding domain HLY11_05735 PF03476 MOSC N-terminal beta barrel domain HLY11_05735 PF03473 MOSC domain HLY11_05740 PF07126 Cell-division protein ZapC HLY11_05745 PF01180 Dihydroorotate dehydrogenase HLY11_05750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_05750 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_05755 PF00419 Fimbrial protein HLY11_05760 PF00419 Fimbrial protein HLY11_05765 PF00419 Fimbrial protein HLY11_05770 PF00577 Outer membrane usher protein HLY11_05770 PF13954 PapC N-terminal domain HLY11_05770 PF13953 PapC C-terminal domain HLY11_05775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_05775 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_05780 PF00419 Fimbrial protein HLY11_05785 PF03358 NADPH-dependent FMN reductase HLY11_05790 PF09084 NMT1/THI5 like HLY11_05795 PF00296 Luciferase-like monooxygenase HLY11_05800 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_05805 PF00005 ABC transporter HLY11_05810 PF01433 Peptidase family M1 domain HLY11_05810 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HLY11_05810 PF11940 Domain of unknown function (DUF3458) Ig-like fold HLY11_05815 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HLY11_05815 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HLY11_05820 PF01336 OB-fold nucleic acid binding domain HLY11_05820 PF00152 tRNA synthetases class II (D, K and N) HLY11_05825 PF00267 Gram-negative porin HLY11_05830 PF00155 Aminotransferase class I and II HLY11_05835 PF00753 Metallo-beta-lactamase superfamily HLY11_05840 PF05951 Bacterial protein of unknown function (DUF882) HLY11_05845 PF03734 L,D-transpeptidase catalytic domain HLY11_05845 PF01471 Putative peptidoglycan binding domain HLY11_05850 PF04310 MukB N-terminal HLY11_05850 PF16330 MukB hinge domain HLY11_05855 PF04288 MukE-like family HLY11_05860 PF17193 MukF C-terminal domain HLY11_05860 PF17192 MukF middle domain HLY11_05860 PF03882 MukF winged-helix domain HLY11_05865 PF13847 Methyltransferase domain HLY11_05870 PF02698 DUF218 domain HLY11_05875 PF01636 Phosphotransferase enzyme family HLY11_05880 PF02348 Cytidylyltransferase HLY11_05885 PF03966 Trm112p-like protein HLY11_05890 PF06224 Winged helix DNA-binding domain HLY11_05895 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HLY11_05900 PF00664 ABC transporter transmembrane region HLY11_05900 PF00005 ABC transporter HLY11_05905 PF00753 Metallo-beta-lactamase superfamily HLY11_05905 PF03772 Competence protein HLY11_05910 PF00216 Bacterial DNA-binding protein HLY11_05915 PF00575 S1 RNA binding domain HLY11_05920 PF02224 Cytidylate kinase HLY11_05925 PF01435 Peptidase family M48 HLY11_05930 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HLY11_05935 PF00266 Aminotransferase class-V HLY11_05940 PF04239 Protein of unknown function (DUF421) HLY11_05945 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HLY11_05945 PF18381 YcaO cyclodehydratase C-terminal domain HLY11_05950 PF01226 Formate/nitrite transporter HLY11_05955 PF01228 Glycine radical HLY11_05955 PF02901 Pyruvate formate lyase-like HLY11_05960 PF04055 Radical SAM superfamily HLY11_05965 PF02525 Flavodoxin-like fold HLY11_05970 PF03466 LysR substrate binding domain HLY11_05970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_05975 PF13520 Amino acid permease HLY11_05980 PF07690 Major Facilitator Superfamily HLY11_05985 PF00857 Isochorismatase family HLY11_05990 PF04976 DMSO reductase anchor subunit (DmsC) HLY11_05995 PF13247 4Fe-4S dicluster domain HLY11_05995 PF12800 4Fe-4S binding domain HLY11_06000 PF00384 Molybdopterin oxidoreductase HLY11_06000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HLY11_06000 PF01568 Molydopterin dinucleotide binding domain HLY11_06005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HLY11_06005 PF02403 Seryl-tRNA synthetase N-terminal domain HLY11_06010 PF12002 MgsA AAA+ ATPase C terminal HLY11_06010 PF16193 AAA C-terminal domain HLY11_06010 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_06015 PF03548 Outer membrane lipoprotein carrier protein LolA HLY11_06020 PF17854 FtsK alpha domain HLY11_06020 PF09397 Ftsk gamma domain HLY11_06020 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HLY11_06020 PF01580 FtsK/SpoIIIE family HLY11_06025 PF01037 Lrp/AsnC ligand binding domain HLY11_06030 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_06035 PF00664 ABC transporter transmembrane region HLY11_06035 PF00005 ABC transporter HLY11_06040 PF00005 ABC transporter HLY11_06040 PF00664 ABC transporter transmembrane region HLY11_06045 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HLY11_06050 PF01176 Translation initiation factor 1A / IF-1 HLY11_06060 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_06060 PF07724 AAA domain (Cdc48 subfamily) HLY11_06060 PF17871 AAA lid domain HLY11_06060 PF02861 Clp amino terminal domain, pathogenicity island component HLY11_06060 PF10431 C-terminal, D2-small domain, of ClpB protein HLY11_06065 PF02617 ATP-dependent Clp protease adaptor protein ClpS HLY11_06070 PF00313 'Cold-shock' DNA-binding domain HLY11_06075 PF02687 FtsX-like permease family HLY11_06075 PF12704 MacB-like periplasmic core domain HLY11_06075 PF00005 ABC transporter HLY11_06080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_06085 PF04393 Protein of unknown function (DUF535) HLY11_06090 PF11398 Protein of unknown function (DUF2813) HLY11_06095 PF00230 Major intrinsic protein HLY11_06100 PF03956 Lysine exporter LysO HLY11_06105 PF03063 Prismane/CO dehydrogenase family HLY11_06110 PF00175 Oxidoreductase NAD-binding domain HLY11_06110 PF00111 2Fe-2S iron-sulfur cluster binding domain HLY11_06110 PF00970 Oxidoreductase FAD-binding domain HLY11_06115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_06115 PF00205 Thiamine pyrophosphate enzyme, central domain HLY11_06115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_06120 PF01212 Beta-eliminating lyase HLY11_06125 PF13460 NAD(P)H-binding HLY11_06125 PF11066 Protein of unknown function (DUF2867) HLY11_06130 PF01370 NAD dependent epimerase/dehydratase family HLY11_06135 PF01510 N-acetylmuramoyl-L-alanine amidase HLY11_06140 PF01906 Putative heavy-metal-binding HLY11_06150 PF12883 Protein of unknown function (DUF3828) HLY11_06155 PF00005 ABC transporter HLY11_06160 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_06165 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06170 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06175 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_06190 PF03611 PTS system sugar-specific permease component HLY11_06195 PF05958 tRNA (Uracil-5-)-methyltransferase HLY11_06200 PF10767 Protein of unknown function (DUF2593) HLY11_06205 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06210 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06215 PF08402 TOBE domain HLY11_06215 PF00005 ABC transporter HLY11_06220 PF13416 Bacterial extracellular solute-binding protein HLY11_06225 PF10722 Putative bacterial sensory transduction regulator HLY11_06230 PF18030 RimK PreATP-grasp domain HLY11_06230 PF08443 RimK-like ATP-grasp domain HLY11_06235 PF00881 Nitroreductase family HLY11_06240 PF07214 Protein of unknown function (DUF1418) HLY11_06245 PF00462 Glutaredoxin HLY11_06250 PF11045 Putative inner membrane protein of Enterobacteriaceae HLY11_06255 PF02080 TrkA-C domain HLY11_06255 PF06826 Predicted Permease Membrane Region HLY11_06260 PF04606 Ogr/Delta-like zinc finger HLY11_06295 PF04984 Phage tail sheath protein subtilisin-like domain HLY11_06295 PF17482 Phage tail sheath C-terminal domain HLY11_06305 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HLY11_06310 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HLY11_06315 PF07484 Phage Tail Collar Domain HLY11_06405 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HLY11_06415 PF06183 DinI-like family HLY11_06425 PF05840 Bacteriophage replication gene A protein (GPA) HLY11_06430 PF02086 D12 class N6 adenine-specific DNA methyltransferase HLY11_06435 PF01258 Prokaryotic dksA/traR C4-type zinc finger HLY11_06445 PF17282 Family of unknown function (DUF5347) HLY11_06455 PF06892 Phage regulatory protein CII (CP76) HLY11_06465 PF07022 Bacteriophage CI repressor helix-turn-helix domain HLY11_06465 PF16452 Bacteriophage CI repressor C-terminal domain HLY11_06475 PF00589 Phage integrase family HLY11_06475 PF02899 Phage integrase, N-terminal SAM-like domain HLY11_06480 PF00440 Bacterial regulatory proteins, tetR family HLY11_06485 PF07690 Major Facilitator Superfamily HLY11_06500 PF07690 Major Facilitator Superfamily HLY11_06505 PF01569 PAP2 superfamily HLY11_06510 PF08220 DeoR-like helix-turn-helix domain HLY11_06510 PF00455 DeoR C terminal sensor domain HLY11_06515 PF07943 Penicillin-binding protein 5, C-terminal domain HLY11_06515 PF00768 D-alanyl-D-alanine carboxypeptidase HLY11_06520 PF13417 Glutathione S-transferase, N-terminal domain HLY11_06520 PF00043 Glutathione S-transferase, C-terminal domain HLY11_06525 PF07995 Glucose / Sorbosone dehydrogenase HLY11_06530 PF10799 Biofilm formation protein (YliH/bssR) HLY11_06535 PF04055 Radical SAM superfamily HLY11_06535 PF18693 TRAM domain HLY11_06535 PF00919 Uncharacterized protein family UPF0004 HLY11_06550 PF17156 Gammaproteobacterial periplasmic sensor domain HLY11_06550 PF00990 Diguanylate cyclase, GGDEF domain HLY11_06555 PF00563 EAL domain HLY11_06555 PF17153 Periplasmic sensor domain, extracellular HLY11_06560 PF12911 N-terminal TM domain of oligopeptide transport permease C HLY11_06560 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06565 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_06575 PF00005 ABC transporter HLY11_06575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_06580 PF01112 Asparaginase HLY11_06585 PF03454 MoeA C-terminal region (domain IV) HLY11_06585 PF00994 Probable molybdopterin binding domain HLY11_06585 PF03453 MoeA N-terminal region (domain I and II) HLY11_06590 PF00899 ThiF family HLY11_06595 PF00923 Transaldolase/Fructose-6-phosphate aldolase HLY11_06600 PF04055 Radical SAM superfamily HLY11_06605 PF02901 Pyruvate formate lyase-like HLY11_06605 PF01228 Glycine radical HLY11_06615 PF00005 ABC transporter HLY11_06615 PF12848 ABC transporter HLY11_06620 PF03734 L,D-transpeptidase catalytic domain HLY11_06620 PF17969 L,D-transpeptidase C-terminal domain HLY11_06625 PF03600 Citrate transporter HLY11_06630 PF02742 Iron dependent repressor, metal binding and dimerisation domain HLY11_06630 PF01325 Iron dependent repressor, N-terminal DNA binding domain HLY11_06640 PF00884 Sulfatase HLY11_06645 PF13505 Outer membrane protein beta-barrel domain HLY11_06655 PF00892 EamA-like transporter family HLY11_06660 PF00210 Ferritin-like domain HLY11_06665 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_06670 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06675 PF00005 ABC transporter HLY11_06680 PF00924 Mechanosensitive ion channel HLY11_06685 PF05971 RNA methyltransferase HLY11_06690 PF07338 Protein of unknown function (DUF1471) HLY11_06695 PF00593 TonB dependent receptor HLY11_06695 PF07715 TonB-dependent Receptor Plug Domain HLY11_06700 PF18331 PKHD-type hydroxylase C-terminal domain HLY11_06700 PF13640 2OG-Fe(II) oxygenase superfamily HLY11_06705 PF01258 Prokaryotic dksA/traR C4-type zinc finger HLY11_06710 PF07338 Protein of unknown function (DUF1471) HLY11_06715 PF02615 Malate/L-lactate dehydrogenase HLY11_06720 PF02885 Glycosyl transferase family, helical bundle domain HLY11_06725 PF13307 Helicase C-terminal domain HLY11_06725 PF06733 DEAD_2 HLY11_06725 PF00270 DEAD/DEAH box helicase HLY11_06740 PF00271 Helicase conserved C-terminal domain HLY11_06740 PF00270 DEAD/DEAH box helicase HLY11_06745 PF09209 Tetracyclin repressor-like, C-terminal domain HLY11_06745 PF00440 Bacterial regulatory proteins, tetR family HLY11_06750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_06755 PF00005 ABC transporter HLY11_06770 PF11076 Putative inner membrane protein YbhQ HLY11_06775 PF03372 Endonuclease/Exonuclease/phosphatase family HLY11_06780 PF13091 PLD-like domain HLY11_06785 PF03706 Lysylphosphatidylglycerol synthase TM region HLY11_06805 PF01027 Inhibitor of apoptosis-promoting Bax1 HLY11_06810 PF01027 Inhibitor of apoptosis-promoting Bax1 HLY11_06820 PF01027 Inhibitor of apoptosis-promoting Bax1 HLY11_06825 PF02391 MoaE protein HLY11_06830 PF02597 ThiS family HLY11_06835 PF01967 MoaC family HLY11_06840 PF00994 Probable molybdopterin binding domain HLY11_06845 PF04055 Radical SAM superfamily HLY11_06845 PF06463 Molybdenum Cofactor Synthesis C HLY11_06850 PF01933 Uncharacterised protein family UPF0052 HLY11_06855 PF00271 Helicase conserved C-terminal domain HLY11_06855 PF04851 Type III restriction enzyme, res subunit HLY11_06855 PF02151 UvrB/uvrC motif HLY11_06855 PF12344 Ultra-violet resistance protein B HLY11_06855 PF17757 UvrB interaction domain HLY11_06865 PF08241 Methyltransferase domain HLY11_06870 PF00155 Aminotransferase class I and II HLY11_06875 PF04055 Radical SAM superfamily HLY11_06875 PF06968 Biotin and Thiamin Synthesis associated domain HLY11_06880 PF00202 Aminotransferase class-III HLY11_06885 PF01161 Phosphatidylethanolamine-binding protein HLY11_06890 PF01095 Pectinesterase HLY11_06895 PF00694 Aconitase C-terminal domain HLY11_06895 PF00330 Aconitase family (aconitate hydratase) HLY11_06900 PF00939 Sodium:sulfate symporter transmembrane region HLY11_06905 PF04303 PrpF protein HLY11_06910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_06910 PF03466 LysR substrate binding domain HLY11_06915 PF10282 Lactonase, 7-bladed beta-propeller HLY11_06925 PF03459 TOBE domain HLY11_06925 PF00005 ABC transporter HLY11_06930 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_06940 PF10766 Multidrug efflux pump-associated protein AcrZ HLY11_06945 PF03459 TOBE domain HLY11_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_06950 PF00005 ABC transporter HLY11_06955 PF16363 GDP-mannose 4,6 dehydratase HLY11_06960 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HLY11_06960 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HLY11_06965 PF10509 Galactokinase galactose-binding signature HLY11_06965 PF08544 GHMP kinases C terminal HLY11_06965 PF00288 GHMP kinases N terminal domain HLY11_06970 PF01263 Aldose 1-epimerase HLY11_06975 PF00300 Histidine phosphatase superfamily (branch 1) HLY11_06980 PF00793 DAHP synthetase I family HLY11_06985 PF13985 YbgS-like protein HLY11_06990 PF01545 Cation efflux family HLY11_06995 PF04973 Nicotinamide mononucleotide transporter HLY11_07000 PF02445 Quinolinate synthetase A protein HLY11_07040 PF16331 TolA binding protein trimerisation HLY11_07040 PF13174 Tetratricopeptide repeat HLY11_07045 PF00691 OmpA family HLY11_07050 PF04052 TolB amino-terminal domain HLY11_07050 PF07676 WD40-like Beta Propeller Repeat HLY11_07055 PF06519 TolA C-terminal HLY11_07060 PF02472 Biopolymer transport protein ExbD/TolR HLY11_07065 PF01618 MotA/TolQ/ExbB proton channel family HLY11_07070 PF03061 Thioesterase superfamily HLY11_07075 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HLY11_07080 PF08173 Membrane bound YbgT-like protein HLY11_07085 PF02322 Cytochrome bd terminal oxidase subunit II HLY11_07090 PF01654 Cytochrome bd terminal oxidase subunit I HLY11_07105 PF02310 B12 binding domain HLY11_07110 PF13941 MutL protein HLY11_07115 PF06368 Methylaspartate mutase E chain (MutE) HLY11_07120 PF07476 Methylaspartate ammonia-lyase C-terminus HLY11_07120 PF05034 Methylaspartate ammonia-lyase N-terminus HLY11_07135 PF00375 Sodium:dicarboxylate symporter family HLY11_07140 PF05681 Fumarate hydratase (Fumerase) HLY11_07140 PF05683 Fumarase C-terminus HLY11_07145 PF12557 Cob(I)alamin adenosyltransferase N terminal HLY11_07145 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HLY11_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_07150 PF03466 LysR substrate binding domain HLY11_07160 PF02629 CoA binding domain HLY11_07160 PF00549 CoA-ligase HLY11_07165 PF00549 CoA-ligase HLY11_07165 PF08442 ATP-grasp domain HLY11_07170 PF02817 e3 binding domain HLY11_07170 PF00364 Biotin-requiring enzyme HLY11_07170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HLY11_07175 PF16078 2-oxoglutarate dehydrogenase N-terminus HLY11_07175 PF16870 2-oxoglutarate dehydrogenase C-terminal HLY11_07175 PF02779 Transketolase, pyrimidine binding domain HLY11_07175 PF00676 Dehydrogenase E1 component HLY11_07180 PF13085 2Fe-2S iron-sulfur cluster binding domain HLY11_07185 PF00890 FAD binding domain HLY11_07185 PF02910 Fumarate reductase flavoprotein C-term HLY11_07190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HLY11_07195 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HLY11_07205 PF00285 Citrate synthase, C-terminal domain HLY11_07210 PF00419 Fimbrial protein HLY11_07215 PF13953 PapC C-terminal domain HLY11_07215 PF13954 PapC N-terminal domain HLY11_07215 PF00577 Outer membrane usher protein HLY11_07220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_07220 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_07225 PF00419 Fimbrial protein HLY11_07230 PF05145 Transition state regulatory protein AbrB HLY11_07235 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HLY11_07235 PF06827 Zinc finger found in FPG and IleRS HLY11_07235 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HLY11_07240 PF03746 LamB/YcsF family HLY11_07245 PF02626 Carboxyltransferase domain, subdomain A and B HLY11_07250 PF02682 Carboxyltransferase domain, subdomain C and D HLY11_07255 PF01784 NIF3 (NGG1p interacting factor 3) HLY11_07260 PF00854 POT family HLY11_07265 PF00875 DNA photolyase HLY11_07265 PF03441 FAD binding domain of DNA photolyase HLY11_07270 PF08349 Protein of unknown function (DUF1722) HLY11_07275 PF10725 Protein of unknown function (DUF2517) HLY11_07280 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) HLY11_07285 PF03814 Potassium-transporting ATPase A subunit HLY11_07295 PF02669 K+-transporting ATPase, c chain HLY11_07300 PF00512 His Kinase A (phospho-acceptor) domain HLY11_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_07300 PF13493 Domain of unknown function (DUF4118) HLY11_07300 PF13492 GAF domain HLY11_07300 PF02702 Osmosensitive K+ channel His kinase sensor domain HLY11_07305 PF00486 Transcriptional regulatory protein, C terminal HLY11_07305 PF00072 Response regulator receiver domain HLY11_07310 PF10946 Protein of unknown function DUF2625 HLY11_07320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HLY11_07320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HLY11_07320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HLY11_07320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HLY11_07325 PF03925 SeqA protein C-terminal domain HLY11_07325 PF17206 SeqA protein N-terminal domain HLY11_07330 PF12697 Alpha/beta hydrolase family HLY11_07335 PF01402 Ribbon-helix-helix protein, copG family HLY11_07340 PF00258 Flavodoxin HLY11_07350 PF01475 Ferric uptake regulator family HLY11_07355 PF13982 YbfN-like lipoprotein HLY11_07360 PF03573 outer membrane porin, OprD family HLY11_07365 PF00749 tRNA synthetases class I (E and Q), catalytic domain HLY11_07365 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HLY11_07370 PF02378 Phosphotransferase system, EIIC HLY11_07370 PF00367 phosphotransferase system, EIIB HLY11_07370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HLY11_07375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HLY11_07380 PF01979 Amidohydrolase family HLY11_07385 PF01047 MarR family HLY11_07385 PF00480 ROK family HLY11_07390 PF13344 Haloacid dehalogenase-like hydrolase HLY11_07395 PF13537 Glutamine amidotransferase domain HLY11_07395 PF00733 Asparagine synthase HLY11_07435 PF02371 Transposase IS116/IS110/IS902 family HLY11_07435 PF01548 Transposase HLY11_07440 PF01494 FAD binding domain HLY11_07445 PF04055 Radical SAM superfamily HLY11_07445 PF01938 TRAM domain HLY11_07445 PF00919 Uncharacterized protein family UPF0004 HLY11_07450 PF02562 PhoH-like protein HLY11_07455 PF02130 Uncharacterized protein family UPF0054 HLY11_07460 PF00571 CBS domain HLY11_07460 PF03471 Transporter associated domain HLY11_07465 PF00795 Carbon-nitrogen hydrolase HLY11_07470 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_07475 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_07480 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_07485 PF00005 ABC transporter HLY11_07490 PF01156 Inosine-uridine preferring nucleoside hydrolase HLY11_07495 PF00012 Hsp70 protein HLY11_07505 PF06889 Protein of unknown function (DUF1266) HLY11_07510 PF08238 Sel1 repeat HLY11_07520 PF06889 Protein of unknown function (DUF1266) HLY11_07525 PF08238 Sel1 repeat HLY11_07530 PF07295 Zinc-ribbon containing domain HLY11_07535 PF13603 Leucyl-tRNA synthetase, Domain 2 HLY11_07535 PF08264 Anticodon-binding domain of tRNA HLY11_07535 PF00133 tRNA synthetases class I (I, L, M and V) HLY11_07540 PF04390 Lipopolysaccharide-assembly HLY11_07545 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HLY11_07545 PF06144 DNA polymerase III, delta subunit HLY11_07550 PF01467 Cytidylyltransferase-like HLY11_07555 PF00300 Histidine phosphatase superfamily (branch 1) HLY11_07565 PF02590 Predicted SPOUT methyltransferase HLY11_07570 PF03717 Penicillin-binding Protein dimerisation domain HLY11_07570 PF00905 Penicillin binding protein transpeptidase domain HLY11_07575 PF01098 Cell cycle protein HLY11_07580 PF03330 Lytic transglycolase HLY11_07580 PF05036 Sporulation related domain HLY11_07585 PF07943 Penicillin-binding protein 5, C-terminal domain HLY11_07585 PF00768 D-alanyl-D-alanine carboxypeptidase HLY11_07590 PF04359 Protein of unknown function (DUF493) HLY11_07595 PF03099 Biotin/lipoate A/B protein ligase family HLY11_07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_07600 PF03466 LysR substrate binding domain HLY11_07605 PF04055 Radical SAM superfamily HLY11_07605 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HLY11_07610 PF02416 mttA/Hcf106 family HLY11_07615 PF00795 Carbon-nitrogen hydrolase HLY11_07620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HLY11_07625 PF00313 'Cold-shock' DNA-binding domain HLY11_07630 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP HLY11_07635 PF03606 C4-dicarboxylate anaerobic carrier HLY11_07640 PF00072 Response regulator receiver domain HLY11_07640 PF12431 Transcriptional regulator HLY11_07645 PF00989 PAS fold HLY11_07645 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HLY11_07645 PF17203 Single cache domain 3 HLY11_07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_07650 PF08218 Citrate lyase ligase C-terminal domain HLY11_07655 PF06857 Malonate decarboxylase delta subunit (MdcD) HLY11_07660 PF03328 HpcH/HpaI aldolase/citrate lyase family HLY11_07665 PF04223 Citrate lyase, alpha subunit (CitF) HLY11_07670 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HLY11_07675 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HLY11_07680 PF00939 Sodium:sulfate symporter transmembrane region HLY11_07685 PF00445 Ribonuclease T2 family HLY11_07690 PF01272 Transcription elongation factor, GreA/GreB, C-term HLY11_07690 PF14760 Rnk N-terminus HLY11_07695 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_07695 PF13823 Alcohol dehydrogenase GroES-associated HLY11_07695 PF00107 Zinc-binding dehydrogenase HLY11_07700 PF00582 Universal stress protein family HLY11_07705 PF13192 Thioredoxin domain HLY11_07705 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_07710 PF00578 AhpC/TSA family HLY11_07710 PF10417 C-terminal domain of 1-Cys peroxiredoxin HLY11_07715 PF13098 Thioredoxin-like domain HLY11_07720 PF03466 LysR substrate binding domain HLY11_07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_07725 PF01507 Phosphoadenosine phosphosulfate reductase family HLY11_07725 PF11922 Domain of unknown function (DUF3440) HLY11_07730 PF02195 ParB-like nuclease domain HLY11_07735 PF00155 Aminotransferase class I and II HLY11_07740 PF00465 Iron-containing alcohol dehydrogenase HLY11_07745 PF04328 Selenoprotein, putative HLY11_07750 PF02554 Carbon starvation protein CstA HLY11_07750 PF13722 5TM C-terminal transporter carbon starvation CstA HLY11_07755 PF03061 Thioesterase superfamily HLY11_07765 PF00550 Phosphopantetheine attachment site HLY11_07765 PF00857 Isochorismatase family HLY11_07770 PF13193 AMP-binding enzyme C-terminal domain HLY11_07770 PF00501 AMP-binding enzyme HLY11_07775 PF00425 chorismate binding enzyme HLY11_07780 PF01497 Periplasmic binding protein HLY11_07785 PF05977 Transmembrane secretion effector HLY11_07790 PF01032 FecCD transport family HLY11_07795 PF01032 FecCD transport family HLY11_07800 PF00005 ABC transporter HLY11_07805 PF02706 Chain length determinant protein HLY11_07810 PF00550 Phosphopantetheine attachment site HLY11_07810 PF13193 AMP-binding enzyme C-terminal domain HLY11_07810 PF00668 Condensation domain HLY11_07810 PF00975 Thioesterase domain HLY11_07810 PF00501 AMP-binding enzyme HLY11_07815 PF03621 MbtH-like protein HLY11_07820 PF11806 Domain of unknown function (DUF3327) HLY11_07820 PF00756 Putative esterase HLY11_07825 PF00593 TonB dependent receptor HLY11_07825 PF07715 TonB-dependent Receptor Plug Domain HLY11_07830 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HLY11_07830 PF01648 4'-phosphopantetheinyl transferase superfamily HLY11_07835 PF01848 Hok/gef family HLY11_07850 PF04107 Glutamate-cysteine ligase family 2(GCS2) HLY11_07855 PF06643 Protein of unknown function (DUF1158) HLY11_07860 PF04237 YjbR HLY11_07865 PF00881 Nitroreductase family HLY11_07870 PF00924 Mechanosensitive ion channel HLY11_07875 PF00324 Amino acid permease HLY11_07880 PF00873 AcrB/AcrD/AcrF family HLY11_07885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_07885 PF00529 HlyD membrane-fusion protein of T1SS HLY11_07890 PF11604 Copper binding periplasmic protein CusF HLY11_07895 PF02321 Outer membrane efflux protein HLY11_07900 PF00072 Response regulator receiver domain HLY11_07900 PF00486 Transcriptional regulatory protein, C terminal HLY11_07905 PF00512 His Kinase A (phospho-acceptor) domain HLY11_07905 PF00672 HAMP domain HLY11_07905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_07910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HLY11_07910 PF13632 Glycosyl transferase family group 2 HLY11_07915 PF13283 Bacteriophage N adsorption protein A C-term HLY11_07920 PF14488 Domain of unknown function (DUF4434) HLY11_07925 PF12833 Helix-turn-helix domain HLY11_07935 PF00196 Bacterial regulatory proteins, luxR family HLY11_07935 PF00072 Response regulator receiver domain HLY11_07940 PF00419 Fimbrial protein HLY11_07945 PF00419 Fimbrial protein HLY11_07950 PF13953 PapC C-terminal domain HLY11_07950 PF13954 PapC N-terminal domain HLY11_07950 PF00577 Outer membrane usher protein HLY11_07955 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_07955 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_07960 PF00419 Fimbrial protein HLY11_07965 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HLY11_07965 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HLY11_07975 PF04307 LexA-binding, inner membrane-associated putative hydrolase HLY11_07980 PF01406 tRNA synthetases class I (C) catalytic domain HLY11_07980 PF09190 DALR domain HLY11_07985 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HLY11_07990 PF12850 Calcineurin-like phosphoesterase superfamily domain HLY11_07995 PF00731 AIR carboxylase HLY11_08000 PF02222 ATP-grasp domain HLY11_08000 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HLY11_08005 PF00696 Amino acid kinase family HLY11_08010 PF11392 Protein of unknown function (DUF2877) HLY11_08015 PF06545 Protein of unknown function (DUF1116) HLY11_08020 PF00549 CoA-ligase HLY11_08020 PF02629 CoA binding domain HLY11_08025 PF02615 Malate/L-lactate dehydrogenase HLY11_08030 PF01546 Peptidase family M20/M25/M40 HLY11_08035 PF05899 Protein of unknown function (DUF861) HLY11_08035 PF07883 Cupin domain HLY11_08040 PF02595 Glycerate kinase family HLY11_08045 PF00860 Permease family HLY11_08050 PF01979 Amidohydrolase family HLY11_08055 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HLY11_08060 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HLY11_08060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HLY11_08065 PF01261 Xylose isomerase-like TIM barrel HLY11_08070 PF00205 Thiamine pyrophosphate enzyme, central domain HLY11_08070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_08070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_08075 PF01614 Bacterial transcriptional regulator HLY11_08075 PF09339 IclR helix-turn-helix domain HLY11_08080 PF04115 Ureidoglycolate lyase HLY11_08085 PF03466 LysR substrate binding domain HLY11_08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_08100 PF00005 ABC transporter HLY11_08105 PF13472 GDSL-like Lipase/Acylhydrolase family HLY11_08110 PF00106 short chain dehydrogenase HLY11_08115 PF00085 Thioredoxin HLY11_08120 PF03649 Uncharacterised protein family (UPF0014) HLY11_08125 PF00005 ABC transporter HLY11_08130 PF01145 SPFH domain / Band 7 family HLY11_08130 PF16200 C-terminal region of band_7 HLY11_08135 PF01957 NfeD-like C-terminal, partner-binding HLY11_08160 PF13411 MerR HTH family regulatory protein HLY11_08165 PF00529 HlyD membrane-fusion protein of T1SS HLY11_08170 PF00664 ABC transporter transmembrane region HLY11_08170 PF00005 ABC transporter HLY11_08170 PF03412 Peptidase C39 family HLY11_08185 PF13520 Amino acid permease HLY11_08190 PF04960 Glutaminase HLY11_08195 PF00403 Heavy-metal-associated domain HLY11_08200 PF01963 TraB family HLY11_08205 PF04073 Aminoacyl-tRNA editing domain HLY11_08210 PF02872 5'-nucleotidase, C-terminal domain HLY11_08210 PF00149 Calcineurin-like phosphoesterase HLY11_08215 PF07690 Major Facilitator Superfamily HLY11_08220 PF02254 TrkA-N domain HLY11_08220 PF00999 Sodium/hydrogen exchanger family HLY11_08225 PF00294 pfkB family carbohydrate kinase HLY11_08230 PF07859 alpha/beta hydrolase fold HLY11_08235 PF00762 Ferrochelatase HLY11_08240 PF05191 Adenylate kinase, active site lid HLY11_08245 PF00183 Hsp90 protein HLY11_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_08250 PF13662 Toprim domain HLY11_08250 PF02132 RecR protein HLY11_08255 PF02575 YbaB/EbfC DNA-binding family HLY11_08260 PF12169 DNA polymerase III subunits gamma and tau domain III HLY11_08260 PF12170 DNA polymerase III tau subunit V interacting with alpha HLY11_08260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HLY11_08265 PF00156 Phosphoribosyl transferase domain HLY11_08270 PF04304 Protein of unknown function (DUF454) HLY11_08275 PF07445 Primosomal replication protein priC HLY11_08280 PF10689 Protein of unknown function (DUF2496) HLY11_08285 PF12795 Mechanosensitive ion channel porin domain HLY11_08285 PF12794 Mechanosensitive ion channel inner membrane domain 1 HLY11_08285 PF00924 Mechanosensitive ion channel HLY11_08290 PF08361 MAATS-type transcriptional repressor, C-terminal region HLY11_08290 PF00440 Bacterial regulatory proteins, tetR family HLY11_08295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_08295 PF00529 HlyD membrane-fusion protein of T1SS HLY11_08300 PF00873 AcrB/AcrD/AcrF family HLY11_08305 PF10757 Biofilm formation regulator YbaJ HLY11_08310 PF05321 Haemolysin expression modulating protein HLY11_08315 PF14602 Hexapeptide repeat of succinyl-transferase HLY11_08315 PF12464 Maltose acetyltransferase HLY11_08320 PF10777 Inner membrane protein YlaC HLY11_08325 PF12792 CSS motif domain associated with EAL HLY11_08325 PF00563 EAL domain HLY11_08330 PF07237 Protein of unknown function (DUF1428) HLY11_08340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HLY11_08345 PF09619 Type III secretion system lipoprotein chaperone (YscW) HLY11_08355 PF00909 Ammonium Transporter Family HLY11_08360 PF00543 Nitrogen regulatory protein P-II HLY11_08365 PF00005 ABC transporter HLY11_08365 PF00664 ABC transporter transmembrane region HLY11_08370 PF00664 ABC transporter transmembrane region HLY11_08370 PF00005 ABC transporter HLY11_08375 PF13404 AsnC-type helix-turn-helix domain HLY11_08375 PF01037 Lrp/AsnC ligand binding domain HLY11_08385 PF12793 Sugar transport-related sRNA regulator N-term HLY11_08385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_08390 PF06508 Queuosine biosynthesis protein QueC HLY11_08405 PF13145 PPIC-type PPIASE domain HLY11_08410 PF00216 Bacterial DNA-binding protein HLY11_08415 PF05362 Lon protease (S16) C-terminal proteolytic domain HLY11_08415 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_08415 PF02190 ATP-dependent protease La (LON) substrate-binding domain HLY11_08420 PF06689 ClpX C4-type zinc finger HLY11_08420 PF10431 C-terminal, D2-small domain, of ClpB protein HLY11_08420 PF07724 AAA domain (Cdc48 subfamily) HLY11_08425 PF00574 Clp protease HLY11_08430 PF05697 Bacterial trigger factor protein (TF) HLY11_08430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HLY11_08430 PF05698 Bacterial trigger factor protein (TF) C-terminus HLY11_08435 PF01722 BolA-like protein HLY11_08440 PF03923 Uncharacterized lipoprotein HLY11_08440 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HLY11_08445 PF07690 Major Facilitator Superfamily HLY11_08450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HLY11_08450 PF06481 COX Aromatic Rich Motif HLY11_08455 PF00115 Cytochrome C and Quinol oxidase polypeptide I HLY11_08460 PF00510 Cytochrome c oxidase subunit III HLY11_08465 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HLY11_08470 PF01040 UbiA prenyltransferase family HLY11_08490 PF07690 Major Facilitator Superfamily HLY11_08495 PF04461 Protein of unknown function (DUF520) HLY11_08500 PF08546 Ketopantoate reductase PanE/ApbA C terminal HLY11_08500 PF02558 Ketopantoate reductase PanE/ApbA HLY11_08505 PF01965 DJ-1/PfpI family HLY11_08510 PF02926 THUMP domain HLY11_08510 PF02568 Thiamine biosynthesis protein (ThiI) HLY11_08515 PF02609 Exonuclease VII small subunit HLY11_08520 PF00348 Polyprenyl synthetase HLY11_08525 PF02780 Transketolase, C-terminal domain HLY11_08525 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HLY11_08525 PF02779 Transketolase, pyrimidine binding domain HLY11_08530 PF00248 Aldo/keto reductase family HLY11_08540 PF04608 Phosphatidylglycerophosphatase A HLY11_08545 PF00586 AIR synthase related protein, N-terminal domain HLY11_08545 PF02769 AIR synthase related protein, C-terminal domain HLY11_08550 PF01029 NusB family HLY11_08555 PF00885 6,7-dimethyl-8-ribityllumazine synthase HLY11_08560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HLY11_08560 PF01872 RibD C-terminal domain HLY11_08565 PF03477 ATP cone domain HLY11_08570 PF11622 Protein of unknown function (DUF3251) HLY11_08575 PF03502 Nucleoside-specific channel-forming protein, Tsx HLY11_08580 PF01844 HNH endonuclease HLY11_08590 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HLY11_08595 PF07549 SecD/SecF GG Motif HLY11_08595 PF02355 Protein export membrane protein HLY11_08600 PF13721 SecD export protein N-terminal TM region HLY11_08600 PF02355 Protein export membrane protein HLY11_08600 PF07549 SecD/SecF GG Motif HLY11_08605 PF02699 Preprotein translocase subunit HLY11_08610 PF01702 Queuine tRNA-ribosyltransferase HLY11_08615 PF02547 Queuosine biosynthesis protein HLY11_08620 PF04336 Acyl carrier protein phosphodiesterase HLY11_08630 PF02903 Alpha amylase, N-terminal ig-like domain HLY11_08630 PF00128 Alpha amylase, catalytic domain HLY11_08635 PF00324 Amino acid permease HLY11_08640 PF05525 Branched-chain amino acid transport protein HLY11_08645 PF00512 His Kinase A (phospho-acceptor) domain HLY11_08645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_08645 PF00989 PAS fold HLY11_08645 PF11808 Phosphate regulon sensor protein PhoR HLY11_08650 PF00486 Transcriptional regulatory protein, C terminal HLY11_08650 PF00072 Response regulator receiver domain HLY11_08655 PF00149 Calcineurin-like phosphoesterase HLY11_08655 PF12320 Type 5 capsule protein repressor C-terminal domain HLY11_08660 PF13476 AAA domain HLY11_08665 PF07690 Major Facilitator Superfamily HLY11_08670 PF00480 ROK family HLY11_08675 PF04381 Putative exonuclease, RdgC HLY11_08685 PF10971 Protein of unknown function (DUF2773) HLY11_08690 PF06865 Pyrimidine/purine nucleoside phosphorylase HLY11_08695 PF07302 AroM protein HLY11_08700 PF16362 YaiA protein HLY11_08705 PF01202 Shikimate kinase HLY11_08710 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HLY11_08715 PF03807 NADP oxidoreductase coenzyme F420-dependent HLY11_08715 PF14748 Pyrroline-5-carboxylate reductase dimerisation HLY11_08720 PF00990 Diguanylate cyclase, GGDEF domain HLY11_08720 PF05230 MASE2 domain HLY11_08725 PF07769 psiF repeat HLY11_08730 PF00245 Alkaline phosphatase HLY11_08735 PF10796 Sigma-S stabilisation anti-adaptor protein HLY11_08745 PF01820 D-ala D-ala ligase N-terminus HLY11_08745 PF07478 D-ala D-ala ligase C-terminus HLY11_08750 PF10953 Protein of unknown function (DUF2754) HLY11_08755 PF10954 Protein of unknown function (DUF2755) HLY11_08760 PF07759 Protein of unknown function (DUF1615) HLY11_08765 PF05992 SbmA/BacA-like family HLY11_08770 PF00144 Beta-lactamase HLY11_08775 PF15977 Winged helix-turn-helix DNA binding HLY11_08780 PF03797 Autotransporter beta-domain HLY11_08780 PF03212 Pertactin HLY11_08785 PF00490 Delta-aminolevulinic acid dehydratase HLY11_08790 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HLY11_08795 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_08800 PF00005 ABC transporter HLY11_08805 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HLY11_08810 PF00196 Bacterial regulatory proteins, luxR family HLY11_08810 PF00072 Response regulator receiver domain HLY11_08815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_08815 PF05231 MASE1 HLY11_08815 PF07730 Histidine kinase HLY11_08820 PF07690 Major Facilitator Superfamily HLY11_08830 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_08835 PF00005 ABC transporter HLY11_08835 PF08402 TOBE domain HLY11_08840 PF02583 Metal-sensitive transcriptional repressor HLY11_08845 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_08845 PF00107 Zinc-binding dehydrogenase HLY11_08850 PF00756 Putative esterase HLY11_08855 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HLY11_08860 PF07690 Major Facilitator Superfamily HLY11_08865 PF07836 DmpG-like communication domain HLY11_08865 PF00682 HMGL-like HLY11_08870 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation HLY11_08870 PF01118 Semialdehyde dehydrogenase, NAD binding domain HLY11_08875 PF01557 Fumarylacetoacetate (FAA) hydrolase family HLY11_08880 PF12697 Alpha/beta hydrolase family HLY11_08885 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HLY11_08890 PF01494 FAD binding domain HLY11_08895 PF09339 IclR helix-turn-helix domain HLY11_08895 PF01614 Bacterial transcriptional regulator HLY11_08900 PF12706 Beta-lactamase superfamily domain HLY11_08910 PF00501 AMP-binding enzyme HLY11_08910 PF13193 AMP-binding enzyme C-terminal domain HLY11_08915 PF01144 Coenzyme A transferase HLY11_08925 PF02803 Thiolase, C-terminal domain HLY11_08925 PF00108 Thiolase, N-terminal domain HLY11_08930 PF07690 Major Facilitator Superfamily HLY11_08935 PF08450 SMP-30/Gluconolactonase/LRE-like region HLY11_08945 PF17853 GGDEF-like domain HLY11_08945 PF13556 PucR C-terminal helix-turn-helix domain HLY11_08945 PF05651 Putative sugar diacid recognition HLY11_08950 PF07690 Major Facilitator Superfamily HLY11_08955 PF02560 Cyanate lyase C-terminal domain HLY11_08960 PF00484 Carbonic anhydrase HLY11_08965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_08965 PF03466 LysR substrate binding domain HLY11_08970 PF07969 Amidohydrolase family HLY11_08975 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HLY11_08980 PF13193 AMP-binding enzyme C-terminal domain HLY11_08980 PF00501 AMP-binding enzyme HLY11_08980 PF16177 Acetyl-coenzyme A synthetase N-terminus HLY11_08985 PF03972 MmgE/PrpD family HLY11_08990 PF00285 Citrate synthase, C-terminal domain HLY11_09000 PF00158 Sigma-54 interaction domain HLY11_09000 PF06506 Propionate catabolism activator HLY11_09000 PF02954 Bacterial regulatory protein, Fis family HLY11_09005 PF07338 Protein of unknown function (DUF1471) HLY11_09010 PF01810 LysE type translocator HLY11_09025 PF00107 Zinc-binding dehydrogenase HLY11_09025 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_09035 PF07969 Amidohydrolase family HLY11_09040 PF00696 Amino acid kinase family HLY11_09045 PF06545 Protein of unknown function (DUF1116) HLY11_09050 PF02629 CoA binding domain HLY11_09050 PF00549 CoA-ligase HLY11_09055 PF11392 Protein of unknown function (DUF2877) HLY11_09060 PF12796 Ankyrin repeats (3 copies) HLY11_09065 PF06496 Protein of unknown function (DUF1097) HLY11_09070 PF03466 LysR substrate binding domain HLY11_09070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_09075 PF00563 EAL domain HLY11_09075 PF00196 Bacterial regulatory proteins, luxR family HLY11_09085 PF02028 BCCT, betaine/carnitine/choline family transporter HLY11_09090 PF13977 BetI-type transcriptional repressor, C-terminal HLY11_09090 PF00440 Bacterial regulatory proteins, tetR family HLY11_09095 PF00171 Aldehyde dehydrogenase family HLY11_09100 PF05199 GMC oxidoreductase HLY11_09100 PF00732 GMC oxidoreductase HLY11_09110 PF12833 Helix-turn-helix domain HLY11_09115 PF11924 Inverse autotransporter, beta-domain HLY11_09140 PF00106 short chain dehydrogenase HLY11_09145 PF03466 LysR substrate binding domain HLY11_09150 PF10685 Stress-induced bacterial acidophilic repeat motif HLY11_09155 PF05974 Domain of unknown function (DUF892) HLY11_09160 PF05974 Domain of unknown function (DUF892) HLY11_09165 PF05067 Manganese containing catalase HLY11_09170 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HLY11_09185 PF00171 Aldehyde dehydrogenase family HLY11_09190 PF01472 PUA domain HLY11_09190 PF00696 Amino acid kinase family HLY11_09195 PF00267 Gram-negative porin HLY11_09200 PF07417 Sigma factor-binding transcriptional regulator Crl HLY11_09205 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HLY11_09210 PF00156 Phosphoribosyl transferase domain HLY11_09215 PF07687 Peptidase dimerisation domain HLY11_09215 PF01546 Peptidase family M20/M25/M40 HLY11_09220 PF00472 RF-1 domain HLY11_09230 PF13673 Acetyltransferase (GNAT) domain HLY11_09235 PF11799 impB/mucB/samB family C-terminal domain HLY11_09235 PF00817 impB/mucB/samB family HLY11_09235 PF11798 IMS family HHH motif HLY11_09240 PF00691 OmpA family HLY11_09240 PF13677 Membrane MotB of proton-channel complex MotA/MotB HLY11_09245 PF00771 FHIPEP family HLY11_09255 PF00877 NlpC/P60 family HLY11_09260 PF04221 RelB antitoxin HLY11_09265 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HLY11_09270 PF03734 L,D-transpeptidase catalytic domain HLY11_09275 PF13230 Glutamine amidotransferases class-II HLY11_09280 PF13580 SIS domain HLY11_09285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HLY11_09285 PF02770 Acyl-CoA dehydrogenase, middle domain HLY11_09285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HLY11_09285 PF09317 Domain of unknown function (DUF1974) HLY11_09295 PF00795 Carbon-nitrogen hydrolase HLY11_09310 PF14220 Domain of unknown function (DUF4329) HLY11_09310 PF03527 RHS protein HLY11_09310 PF05593 RHS Repeat HLY11_09340 PF09346 SMI1 / KNR4 family (SUKH-1) HLY11_09365 PF04717 Type VI secretion system, phage-baseplate injector HLY11_09365 PF16671 Actin cross-linking domain HLY11_09425 PF00691 OmpA family HLY11_09475 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_09475 PF10431 C-terminal, D2-small domain, of ClpB protein HLY11_09475 PF07724 AAA domain (Cdc48 subfamily) HLY11_09475 PF17871 AAA lid domain HLY11_09515 PF00929 Exonuclease HLY11_09520 PF00075 RNase H HLY11_09525 PF08241 Methyltransferase domain HLY11_09530 PF16123 Hydroxyacylglutathione hydrolase C-terminus HLY11_09530 PF00753 Metallo-beta-lactamase superfamily HLY11_09535 PF01476 LysM domain HLY11_09535 PF01464 Transglycosylase SLT domain HLY11_09540 PF08241 Methyltransferase domain HLY11_09545 PF03372 Endonuclease/Exonuclease/phosphatase family HLY11_09550 PF03466 LysR substrate binding domain HLY11_09550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_09555 PF00248 Aldo/keto reductase family HLY11_09595 PF00005 ABC transporter HLY11_09595 PF09383 NIL domain HLY11_09600 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_09605 PF03180 NLPA lipoprotein HLY11_09610 PF16358 RcsF lipoprotein HLY11_09615 PF01980 tRNA-methyltransferase O HLY11_09615 PF18389 TrmO C-terminal domain HLY11_09620 PF03129 Anticodon binding domain HLY11_09620 PF04073 Aminoacyl-tRNA editing domain HLY11_09620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HLY11_09625 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family HLY11_09630 PF17185 NlpE C-terminal OB domain HLY11_09630 PF04170 NlpE N-terminal domain HLY11_09635 PF00472 RF-1 domain HLY11_09640 PF07152 YaeQ protein HLY11_09645 PF06786 Uncharacterised protein family (UPF0253) HLY11_09650 PF07073 Modulator of Rho-dependent transcription termination (ROF) HLY11_09655 PF09179 TilS substrate binding domain HLY11_09655 PF01171 PP-loop family HLY11_09655 PF11734 TilS substrate C-terminal domain HLY11_09660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HLY11_09670 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HLY11_09675 PF14579 Helix-hairpin-helix motif HLY11_09675 PF02811 PHP domain HLY11_09675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HLY11_09675 PF07733 Bacterial DNA polymerase III alpha NTPase domain HLY11_09675 PF01336 OB-fold nucleic acid binding domain HLY11_09680 PF01351 Ribonuclease HII HLY11_09685 PF02684 Lipid-A-disaccharide synthetase HLY11_09690 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HLY11_09690 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_09695 PF07977 FabA-like domain HLY11_09700 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HLY11_09700 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_09705 PF03938 Outer membrane protein (OmpH-like) HLY11_09710 PF01103 Surface antigen HLY11_09710 PF07244 Surface antigen variable number repeat HLY11_09715 PF17820 PDZ domain HLY11_09715 PF02163 Peptidase family M50 HLY11_09725 PF01255 Putative undecaprenyl diphosphate synthase HLY11_09730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HLY11_09730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HLY11_09730 PF13288 DXP reductoisomerase C-terminal domain HLY11_09735 PF01765 Ribosome recycling factor HLY11_09740 PF00696 Amino acid kinase family HLY11_09745 PF00889 Elongation factor TS HLY11_09750 PF00318 Ribosomal protein S2 HLY11_09755 PF00557 Metallopeptidase family M24 HLY11_09760 PF08335 GlnD PII-uridylyltransferase HLY11_09760 PF01842 ACT domain HLY11_09760 PF01966 HD domain HLY11_09760 PF01909 Nucleotidyltransferase domain HLY11_09765 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HLY11_09765 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_09765 PF14602 Hexapeptide repeat of succinyl-transferase HLY11_09770 PF11944 Protein of unknown function (DUF3461) HLY11_09775 PF13556 PucR C-terminal helix-turn-helix domain HLY11_09775 PF05651 Putative sugar diacid recognition HLY11_09775 PF17853 GGDEF-like domain HLY11_09780 PF00595 PDZ domain HLY11_09785 PF13286 Phosphohydrolase-associated domain HLY11_09785 PF01966 HD domain HLY11_09790 PF01048 Phosphorylase superfamily HLY11_09795 PF01497 Periplasmic binding protein HLY11_09800 PF03458 UPF0126 domain HLY11_09805 PF01521 Iron-sulphur cluster biosynthesis HLY11_09815 PF00654 Voltage gated chloride channel HLY11_09820 PF00202 Aminotransferase class-III HLY11_09825 PF01032 FecCD transport family HLY11_09830 PF01497 Periplasmic binding protein HLY11_09835 PF00005 ABC transporter HLY11_09840 PF07715 TonB-dependent Receptor Plug Domain HLY11_09840 PF00593 TonB dependent receptor HLY11_09845 PF14814 Bifunctional transglycosylase second domain HLY11_09845 PF00912 Transglycosylase HLY11_09845 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal HLY11_09845 PF00905 Penicillin binding protein transpeptidase domain HLY11_09850 PF00271 Helicase conserved C-terminal domain HLY11_09850 PF00270 DEAD/DEAH box helicase HLY11_09850 PF08482 ATP-dependent helicase C-terminal HLY11_09850 PF04408 Helicase associated domain (HA2) HLY11_09855 PF02834 LigT like Phosphoesterase HLY11_09860 PF17746 SfsA N-terminal OB domain HLY11_09860 PF03749 Sugar fermentation stimulation protein RE domain HLY11_09865 PF01258 Prokaryotic dksA/traR C4-type zinc finger HLY11_09870 PF00749 tRNA synthetases class I (E and Q), catalytic domain HLY11_09875 PF01743 Poly A polymerase head domain HLY11_09875 PF12627 Probable RNA and SrmB- binding site of polymerase A HLY11_09875 PF12626 Polymerase A arginine-rich C-terminus HLY11_09880 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HLY11_09885 PF00419 Fimbrial protein HLY11_09890 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_09890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_09895 PF00577 Outer membrane usher protein HLY11_09895 PF13954 PapC N-terminal domain HLY11_09895 PF13953 PapC C-terminal domain HLY11_09900 PF00419 Fimbrial protein HLY11_09920 PF02548 Ketopantoate hydroxymethyltransferase HLY11_09925 PF02569 Pantoate-beta-alanine ligase HLY11_09930 PF04754 Putative transposase, YhgA-like HLY11_09935 PF02261 Aspartate decarboxylase HLY11_09940 PF01522 Polysaccharide deacetylase HLY11_09945 PF03610 PTS system fructose IIA component HLY11_09950 PF01061 ABC-2 type transporter HLY11_09955 PF00005 ABC transporter HLY11_09960 PF00484 Carbonic anhydrase HLY11_09965 PF00156 Phosphoribosyl transferase domain HLY11_09970 PF01011 PQQ enzyme repeat HLY11_09975 PF00394 Multicopper oxidase HLY11_09975 PF07731 Multicopper oxidase HLY11_09975 PF07732 Multicopper oxidase HLY11_09980 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) HLY11_09985 PF17284 Spermidine synthase tetramerisation domain HLY11_09990 PF02675 S-adenosylmethionine decarboxylase HLY11_09995 PF06062 Uncharacterised protein family (UPF0231) HLY11_10000 PF06434 Aconitate hydratase 2 N-terminus HLY11_10000 PF00330 Aconitase family (aconitate hydratase) HLY11_10000 PF11791 Aconitate B N-terminal domain HLY11_10005 PF11737 Protein of unknown function (DUF3300) HLY11_10010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HLY11_10010 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_10015 PF00364 Biotin-requiring enzyme HLY11_10015 PF02817 e3 binding domain HLY11_10015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HLY11_10020 PF00456 Transketolase, thiamine diphosphate binding domain HLY11_10020 PF17831 Pyruvate dehydrogenase E1 component middle domain HLY11_10025 PF00392 Bacterial regulatory proteins, gntR family HLY11_10025 PF07729 FCD domain HLY11_10030 PF00324 Amino acid permease HLY11_10035 PF17113 Regulatory signalling modulator protein AmpE HLY11_10040 PF01510 N-acetylmuramoyl-L-alanine amidase HLY11_10045 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HLY11_10045 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HLY11_10050 PF07963 Prokaryotic N-terminal methylation motif HLY11_10055 PF00437 Type II/IV secretion system protein HLY11_10055 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HLY11_10060 PF00482 Type II secretion system (T2SS), protein F HLY11_10065 PF00478 IMP dehydrogenase / GMP reductase domain HLY11_10070 PF01121 Dephospho-CoA kinase HLY11_10075 PF07072 Cell division protein HLY11_10080 PF03884 DNA gyrase inhibitor YacG HLY11_10085 PF00293 NUDIX domain HLY11_10090 PF01043 SecA preprotein cross-linking domain HLY11_10090 PF07516 SecA Wing and Scaffold domain HLY11_10090 PF07517 SecA DEAD-like domain HLY11_10090 PF02810 SEC-C motif HLY11_10095 PF06558 Secretion monitor precursor protein (SecM) HLY11_10100 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HLY11_10105 PF12327 FtsZ family, C-terminal domain HLY11_10105 PF00091 Tubulin/FtsZ family, GTPase domain HLY11_10110 PF02491 SHS2 domain inserted in FTSA HLY11_10115 PF03799 Cell division protein FtsQ HLY11_10115 PF08478 POTRA domain, FtsQ-type HLY11_10120 PF01820 D-ala D-ala ligase N-terminus HLY11_10120 PF07478 D-ala D-ala ligase C-terminus HLY11_10125 PF08245 Mur ligase middle domain HLY11_10125 PF01225 Mur ligase family, catalytic domain HLY11_10125 PF02875 Mur ligase family, glutamate ligase domain HLY11_10130 PF03033 Glycosyltransferase family 28 N-terminal domain HLY11_10130 PF04101 Glycosyltransferase family 28 C-terminal domain HLY11_10135 PF01098 Cell cycle protein HLY11_10140 PF08245 Mur ligase middle domain HLY11_10140 PF02875 Mur ligase family, glutamate ligase domain HLY11_10145 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HLY11_10145 PF00953 Glycosyl transferase family 4 HLY11_10150 PF02875 Mur ligase family, glutamate ligase domain HLY11_10150 PF01225 Mur ligase family, catalytic domain HLY11_10150 PF08245 Mur ligase middle domain HLY11_10155 PF01225 Mur ligase family, catalytic domain HLY11_10155 PF02875 Mur ligase family, glutamate ligase domain HLY11_10155 PF08245 Mur ligase middle domain HLY11_10160 PF03717 Penicillin-binding Protein dimerisation domain HLY11_10160 PF00905 Penicillin binding protein transpeptidase domain HLY11_10165 PF04999 Cell division protein FtsL HLY11_10170 PF01795 MraW methylase family HLY11_10175 PF02381 MraZ protein, putative antitoxin-like HLY11_10180 PF00356 Bacterial regulatory proteins, lacI family HLY11_10180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_10190 PF10369 Small subunit of acetolactate synthase HLY11_10195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_10195 PF00205 Thiamine pyrophosphate enzyme, central domain HLY11_10195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_10200 PF03466 LysR substrate binding domain HLY11_10200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_10205 PF08054 Leucine operon leader peptide HLY11_10210 PF00682 HMGL-like HLY11_10210 PF08502 LeuA allosteric (dimerisation) domain HLY11_10215 PF00180 Isocitrate/isopropylmalate dehydrogenase HLY11_10220 PF00330 Aconitase family (aconitate hydratase) HLY11_10225 PF00694 Aconitase C-terminal domain HLY11_10230 PF07690 Major Facilitator Superfamily HLY11_10240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_10240 PF12793 Sugar transport-related sRNA regulator N-term HLY11_10255 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_10260 PF00005 ABC transporter HLY11_10265 PF02371 Transposase IS116/IS110/IS902 family HLY11_10265 PF01548 Transposase HLY11_10270 PF09335 SNARE associated Golgi protein HLY11_10275 PF02311 AraC-like ligand binding domain HLY11_10275 PF12833 Helix-turn-helix domain HLY11_10280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_10285 PF11762 L-arabinose isomerase C-terminal domain HLY11_10285 PF02610 L-arabinose isomerase HLY11_10290 PF00596 Class II Aldolase and Adducin N-terminal domain HLY11_10295 PF00136 DNA polymerase family B HLY11_10295 PF03104 DNA polymerase family B, exonuclease domain HLY11_10300 PF18337 RapA N-terminal Tudor like domain HLY11_10300 PF18339 RapA N-terminal Tudor like domain 1 HLY11_10300 PF00271 Helicase conserved C-terminal domain HLY11_10300 PF12137 RNA polymerase recycling family C-terminal HLY11_10300 PF00176 SNF2 family N-terminal domain HLY11_10305 PF00849 RNA pseudouridylate synthase HLY11_10320 PF00226 DnaJ domain HLY11_10320 PF05099 Tellurite resistance protein TerB HLY11_10325 PF04453 LPS transport system D HLY11_10325 PF03968 OstA-like protein HLY11_10330 PF00639 PPIC-type PPIASE domain HLY11_10330 PF09312 SurA N-terminal domain HLY11_10335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HLY11_10340 PF00398 Ribosomal RNA adenine dimethylase HLY11_10345 PF04379 ApaG domain HLY11_10350 PF00149 Calcineurin-like phosphoesterase HLY11_10370 PF00186 Dihydrofolate reductase HLY11_10375 PF00999 Sodium/hydrogen exchanger family HLY11_10375 PF02254 TrkA-N domain HLY11_10380 PF02525 Flavodoxin-like fold HLY11_10385 PF06004 Bacterial protein of unknown function (DUF903) HLY11_10390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HLY11_10390 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HLY11_10390 PF02142 MGS-like domain HLY11_10395 PF00117 Glutamine amidotransferase class-I HLY11_10395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HLY11_10400 PF05173 Dihydrodipicolinate reductase, C-terminus HLY11_10400 PF01113 Dihydrodipicolinate reductase, N-terminus HLY11_10405 PF01156 Inosine-uridine preferring nucleoside hydrolase HLY11_10410 PF02401 LytB protein HLY11_10415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HLY11_10420 PF01252 Signal peptidase (SPase) II HLY11_10425 PF06827 Zinc finger found in FPG and IleRS HLY11_10425 PF08264 Anticodon-binding domain of tRNA HLY11_10425 PF00133 tRNA synthetases class I (I, L, M and V) HLY11_10430 PF01687 Riboflavin kinase HLY11_10430 PF06574 FAD synthetase HLY11_10435 PF10837 Protein of unknown function (DUF2575) HLY11_10440 PF01649 Ribosomal protein S20 HLY11_10455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_10455 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_10460 PF13953 PapC C-terminal domain HLY11_10460 PF13954 PapC N-terminal domain HLY11_10460 PF00577 Outer membrane usher protein HLY11_10470 PF03466 LysR substrate binding domain HLY11_10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_10475 PF06965 Na+/H+ antiporter 1 HLY11_10485 PF16385 Domain of unknown function HLY11_10485 PF00884 Sulfatase HLY11_10495 PF01848 Hok/gef family HLY11_10500 PF00684 DnaJ central domain HLY11_10500 PF00226 DnaJ domain HLY11_10500 PF01556 DnaJ C terminal domain HLY11_10505 PF00012 Hsp70 protein HLY11_10510 PF10807 Protein of unknown function (DUF2541) HLY11_10515 PF03981 Ubiquinol-cytochrome C chaperone HLY11_10515 PF13099 Domain of unknown function (DUF3944) HLY11_10520 PF01184 GPR1/FUN34/yaaH family HLY11_10525 PF00994 Probable molybdopterin binding domain HLY11_10530 PF00923 Transaldolase/Fructose-6-phosphate aldolase HLY11_10535 PF01235 Sodium:alanine symporter family HLY11_10540 PF03883 Peroxide stress protein YaaA HLY11_10545 PF10697 Protein of unknown function (DUF2502) HLY11_10550 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_10550 PF14821 Threonine synthase N terminus HLY11_10555 PF08544 GHMP kinases C terminal HLY11_10555 PF00288 GHMP kinases N terminal domain HLY11_10560 PF03447 Homoserine dehydrogenase, NAD binding domain HLY11_10560 PF00696 Amino acid kinase family HLY11_10560 PF01842 ACT domain HLY11_10560 PF00742 Homoserine dehydrogenase HLY11_10560 PF13840 ACT domain HLY11_10565 PF08254 Threonine leader peptide HLY11_10570 PF00588 SpoU rRNA Methylase family HLY11_10580 PF00486 Transcriptional regulatory protein, C terminal HLY11_10580 PF00072 Response regulator receiver domain HLY11_10585 PF06123 Inner membrane protein CreD HLY11_10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_10590 PF00512 His Kinase A (phospho-acceptor) domain HLY11_10590 PF00672 HAMP domain HLY11_10595 PF00072 Response regulator receiver domain HLY11_10595 PF00486 Transcriptional regulatory protein, C terminal HLY11_10600 PF05981 CreA protein HLY11_10605 PF12833 Helix-turn-helix domain HLY11_10605 PF06445 GyrI-like small molecule binding domain HLY11_10610 PF00300 Histidine phosphatase superfamily (branch 1) HLY11_10615 PF01931 Protein of unknown function DUF84 HLY11_10620 PF01371 Trp repressor protein HLY11_10625 PF14718 Soluble lytic murein transglycosylase L domain HLY11_10625 PF01464 Transglycosylase SLT domain HLY11_10630 PF12848 ABC transporter HLY11_10630 PF00005 ABC transporter HLY11_10640 PF13521 AAA domain HLY11_10640 PF01381 Helix-turn-helix HLY11_10645 PF18073 Rubredoxin metal binding domain HLY11_10650 PF18429 Domain of unknown function (DUF5609) HLY11_10655 PF10144 Bacterial virulence factor haemolysin HLY11_10660 PF03099 Biotin/lipoate A/B protein ligase family HLY11_10660 PF10437 Bacterial lipoate protein ligase C-terminus HLY11_10670 PF01048 Phosphorylase superfamily HLY11_10675 PF01676 Metalloenzyme superfamily HLY11_10680 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HLY11_10680 PF00591 Glycosyl transferase family, a/b domain HLY11_10680 PF02885 Glycosyl transferase family, helical bundle domain HLY11_10685 PF01791 DeoC/LacD family aldolase HLY11_10690 PF11230 Protein of unknown function (DUF3029) HLY11_10695 PF04055 Radical SAM superfamily HLY11_10700 PF01026 TatD related DNase HLY11_10705 PF01734 Patatin-like phospholipase HLY11_10710 PF07043 Protein of unknown function (DUF1328) HLY11_10715 PF04972 BON domain HLY11_10720 PF16658 Class II release factor RF3, C-terminal domain HLY11_10720 PF03144 Elongation factor Tu domain 2 HLY11_10720 PF00009 Elongation factor Tu GTP binding domain HLY11_10725 PF13419 Haloacid dehalogenase-like hydrolase HLY11_10730 PF00583 Acetyltransferase (GNAT) family HLY11_10735 PF03603 DNA polymerase III psi subunit HLY11_10740 PF05175 Methyltransferase small domain HLY11_10740 PF08468 Methyltransferase small domain N-terminal HLY11_10750 PF07256 Protein of unknown function (DUF1435) HLY11_10755 PF06276 Ferric iron reductase FhuF-like transporter HLY11_10755 PF11575 FhuF 2Fe-2S C-terminal domain HLY11_10760 PF00196 Bacterial regulatory proteins, luxR family HLY11_10765 PF00196 Bacterial regulatory proteins, luxR family HLY11_10770 PF06738 Putative threonine/serine exporter HLY11_10775 PF12821 Threonine/Serine exporter, ThrE HLY11_10780 PF17948 DnaT DNA-binding domain HLY11_10785 PF01695 IstB-like ATP binding protein HLY11_10790 PF10696 Protein of unknown function (DUF2501) HLY11_10795 PF00884 Sulfatase HLY11_10800 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_10800 PF00107 Zinc-binding dehydrogenase HLY11_10805 PF07729 FCD domain HLY11_10805 PF00392 Bacterial regulatory proteins, gntR family HLY11_10810 PF07690 Major Facilitator Superfamily HLY11_10815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HLY11_10815 PF00672 HAMP domain HLY11_10815 PF02203 Tar ligand binding domain homologue HLY11_10825 PF02554 Carbon starvation protein CstA HLY11_10825 PF13722 5TM C-terminal transporter carbon starvation CstA HLY11_10830 PF04328 Selenoprotein, putative HLY11_10835 PF02492 CobW/HypB/UreG, nucleotide-binding domain HLY11_10835 PF07683 Cobalamin synthesis protein cobW C-terminal domain HLY11_10860 PF02384 N-6 DNA Methylase HLY11_10865 PF01420 Type I restriction modification DNA specificity domain HLY11_10880 PF06568 Domain of unknown function (DUF1127) HLY11_10885 PF00155 Aminotransferase class I and II HLY11_10885 PF00392 Bacterial regulatory proteins, gntR family HLY11_10890 PF04754 Putative transposase, YhgA-like HLY11_10900 PF07690 Major Facilitator Superfamily HLY11_10905 PF04286 Protein of unknown function (DUF445) HLY11_10910 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HLY11_10915 PF01869 BadF/BadG/BcrA/BcrD ATPase family HLY11_10920 PF11823 Protein of unknown function (DUF3343) HLY11_10930 PF06977 SdiA-regulated HLY11_10935 PF06779 Uncharacterised MFS-type transporter YbfB HLY11_10940 PF02369 Bacterial Ig-like domain (group 1) HLY11_10940 PF11924 Inverse autotransporter, beta-domain HLY11_10940 PF09134 Invasin, domain 3 HLY11_10945 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family HLY11_10950 PF07670 Nucleoside recognition HLY11_10955 PF07670 Nucleoside recognition HLY11_10960 PF01979 Amidohydrolase family HLY11_10965 PF03466 LysR substrate binding domain HLY11_10965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_10970 PF04965 Gene 25-like lysozyme HLY11_10980 PF10887 Protein of unknown function (DUF2686) HLY11_10985 PF07729 FCD domain HLY11_10985 PF00392 Bacterial regulatory proteins, gntR family HLY11_10990 PF01232 Mannitol dehydrogenase Rossmann domain HLY11_10990 PF08125 Mannitol dehydrogenase C-terminal domain HLY11_10995 PF03786 D-mannonate dehydratase (UxuA) HLY11_11000 PF13361 UvrD-like helicase C-terminal domain HLY11_11000 PF00580 UvrD/REP helicase N-terminal domain HLY11_11005 PF00271 Helicase conserved C-terminal domain HLY11_11005 PF09369 Domain of unknown function (DUF1998) HLY11_11005 PF00270 DEAD/DEAH box helicase HLY11_11015 PF00176 SNF2 family N-terminal domain HLY11_11015 PF18339 RapA N-terminal Tudor like domain 1 HLY11_11015 PF00271 Helicase conserved C-terminal domain HLY11_11015 PF12137 RNA polymerase recycling family C-terminal HLY11_11015 PF18337 RapA N-terminal Tudor like domain HLY11_11045 PF01344 Kelch motif HLY11_11050 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase HLY11_11080 PF06755 CbtA_toxin of type IV toxin-antitoxin system HLY11_11085 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A HLY11_11090 PF04002 RadC-like JAB domain HLY11_11095 PF06067 Domain of unknown function (DUF932) HLY11_11120 PF01926 50S ribosome-binding GTPase HLY11_11125 PF08220 DeoR-like helix-turn-helix domain HLY11_11125 PF13280 WYL domain HLY11_11130 PF08463 EcoEI R protein C-terminal HLY11_11130 PF00271 Helicase conserved C-terminal domain HLY11_11130 PF04851 Type III restriction enzyme, res subunit HLY11_11130 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HLY11_11135 PF02384 N-6 DNA Methylase HLY11_11135 PF12161 HsdM N-terminal domain HLY11_11160 PF00589 Phage integrase family HLY11_11160 PF13356 Arm DNA-binding domain HLY11_11170 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_11170 PF00107 Zinc-binding dehydrogenase HLY11_11175 PF05872 Bacterial protein of unknown function (DUF853) HLY11_11180 PF03739 Lipopolysaccharide export system permease LptF/LptG HLY11_11185 PF03739 Lipopolysaccharide export system permease LptF/LptG HLY11_11190 PF00883 Cytosol aminopeptidase family, catalytic domain HLY11_11190 PF02789 Cytosol aminopeptidase family, N-terminal domain HLY11_11195 PF04364 DNA polymerase III chi subunit, HolC HLY11_11200 PF08264 Anticodon-binding domain of tRNA HLY11_11200 PF00133 tRNA synthetases class I (I, L, M and V) HLY11_11200 PF10458 Valyl tRNA synthetase tRNA binding arm HLY11_11205 PF05987 Bacterial protein of unknown function (DUF898) HLY11_11210 PF00583 Acetyltransferase (GNAT) family HLY11_11215 PF06877 Regulator of ribonuclease activity B HLY11_11220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HLY11_11220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HLY11_11230 PF04074 YhcH/YjgK/YiaL HLY11_11235 PF00440 Bacterial regulatory proteins, tetR family HLY11_11245 PF01042 Endoribonuclease L-PSP HLY11_11250 PF08052 PyrBI operon leader peptide HLY11_11255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HLY11_11255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HLY11_11260 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HLY11_11260 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HLY11_11265 PF01042 Endoribonuclease L-PSP HLY11_11270 PF00690 Cation transporter/ATPase, N-terminus HLY11_11270 PF00689 Cation transporting ATPase, C-terminus HLY11_11275 PF17059 MgtA leader peptide HLY11_11280 PF00356 Bacterial regulatory proteins, lacI family HLY11_11285 PF02378 Phosphotransferase system, EIIC HLY11_11285 PF00367 phosphotransferase system, EIIB HLY11_11290 PF11941 Domain of unknown function (DUF3459) HLY11_11290 PF00128 Alpha amylase, catalytic domain HLY11_11295 PF13597 Anaerobic ribonucleoside-triphosphate reductase HLY11_11295 PF03477 ATP cone domain HLY11_11305 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HLY11_11310 PF04221 RelB antitoxin HLY11_11315 PF07361 Cytochrome b562 HLY11_11320 PF01523 Putative modulator of DNA gyrase HLY11_11325 PF04751 Protein of unknown function (DUF615) HLY11_11330 PF08245 Mur ligase middle domain HLY11_11330 PF02875 Mur ligase family, glutamate ligase domain HLY11_11330 PF01225 Mur ligase family, catalytic domain HLY11_11335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HLY11_11340 PF02653 Branched-chain amino acid transport system / permease component HLY11_11345 PF02653 Branched-chain amino acid transport system / permease component HLY11_11350 PF00005 ABC transporter HLY11_11355 PF13407 Periplasmic binding protein domain HLY11_11360 PF00719 Inorganic pyrophosphatase HLY11_11365 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HLY11_11370 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HLY11_11375 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HLY11_11380 PF04357 TamB, inner membrane protein subunit of TAM complex HLY11_11385 PF01103 Surface antigen HLY11_11385 PF07244 Surface antigen variable number repeat HLY11_11385 PF17243 POTRA domain TamA domain 1 HLY11_11390 PF01625 Peptide methionine sulfoxide reductase HLY11_11395 PF03471 Transporter associated domain HLY11_11395 PF00571 CBS domain HLY11_11395 PF01595 Cyclin M transmembrane N-terminal domain HLY11_11400 PF06526 Protein of unknown function (DUF1107) HLY11_11405 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HLY11_11415 PF00459 Inositol monophosphatase family HLY11_11420 PF02872 5'-nucleotidase, C-terminal domain HLY11_11420 PF00149 Calcineurin-like phosphoesterase HLY11_11430 PF00892 EamA-like transporter family HLY11_11435 PF01814 Hemerythrin HHE cation binding domain HLY11_11435 PF04405 Domain of Unknown function (DUF542) HLY11_11450 PF00324 Amino acid permease HLY11_11455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HLY11_11455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HLY11_11460 PF04225 Opacity-associated protein A LysM-like domain HLY11_11460 PF08525 Opacity-associated protein A N-terminal motif HLY11_11465 PF17938 Tetracyclin repressor-like, C-terminal domain HLY11_11480 PF01144 Coenzyme A transferase HLY11_11485 PF00890 FAD binding domain HLY11_11485 PF02910 Fumarate reductase flavoprotein C-term HLY11_11490 PF07690 Major Facilitator Superfamily HLY11_11495 PF01575 MaoC like domain HLY11_11510 PF03948 Ribosomal protein L9, C-terminal domain HLY11_11510 PF01281 Ribosomal protein L9, N-terminal domain HLY11_11515 PF01084 Ribosomal protein S18 HLY11_11520 PF00436 Single-strand binding protein family HLY11_11525 PF01250 Ribosomal protein S6 HLY11_11530 PF07338 Protein of unknown function (DUF1471) HLY11_11535 PF00596 Class II Aldolase and Adducin N-terminal domain HLY11_11540 PF01261 Xylose isomerase-like TIM barrel HLY11_11545 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HLY11_11550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_11555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_11560 PF03611 PTS system sugar-specific permease component HLY11_11570 PF08220 DeoR-like helix-turn-helix domain HLY11_11570 PF00455 DeoR C terminal sensor domain HLY11_11575 PF00326 Prolyl oligopeptidase family HLY11_11580 PF07338 Protein of unknown function (DUF1471) HLY11_11585 PF07338 Protein of unknown function (DUF1471) HLY11_11590 PF02770 Acyl-CoA dehydrogenase, middle domain HLY11_11590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HLY11_11590 PF18158 Adaptive response protein AidB N-terminal domain HLY11_11595 PF03738 Glutathionylspermidine synthase preATP-grasp HLY11_11600 PF06693 Protein of unknown function (DUF1190) HLY11_11605 PF03994 Domain of Unknown Function (DUF350) HLY11_11610 PF10679 Protein of unknown function (DUF2491) HLY11_11615 PF04012 PspA/IM30 family HLY11_11620 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) HLY11_11625 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HLY11_11625 PF08666 SAF domain HLY11_11630 PF07690 Major Facilitator Superfamily HLY11_11635 PF00701 Dihydrodipicolinate synthetase family HLY11_11640 PF01614 Bacterial transcriptional regulator HLY11_11640 PF09339 IclR helix-turn-helix domain HLY11_11645 PF08032 RNA 2'-O ribose methyltransferase substrate binding HLY11_11645 PF00588 SpoU rRNA Methylase family HLY11_11650 PF00773 RNB domain HLY11_11650 PF00575 S1 RNA binding domain HLY11_11650 PF17876 Cold shock domain HLY11_11650 PF08461 Ribonuclease R winged-helix domain HLY11_11650 PF08206 Ribonuclease B OB domain HLY11_11655 PF02082 Transcriptional regulator HLY11_11660 PF00709 Adenylosuccinate synthetase HLY11_11665 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HLY11_11670 PF01145 SPFH domain / Band 7 family HLY11_11675 PF12221 Bacterial membrane protein N terminal HLY11_11675 PF01145 SPFH domain / Band 7 family HLY11_11680 PF01926 50S ribosome-binding GTPase HLY11_11680 PF13167 GTP-binding GTPase N-terminal HLY11_11680 PF16360 GTP-binding GTPase Middle Region HLY11_11685 PF17209 Hfq protein HLY11_11695 PF01119 DNA mismatch repair protein, C-terminal domain HLY11_11695 PF08676 MutL C terminal dimerisation domain HLY11_11700 PF01520 N-acetylmuramoyl-L-alanine amidase HLY11_11705 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HLY11_11710 PF03853 YjeF-related protein N-terminus HLY11_11710 PF01256 Carbohydrate kinase HLY11_11715 PF08331 Domain of unknown function (DUF1730) HLY11_11740 PF00929 Exonuclease HLY11_11745 PF03193 RsgA GTPase HLY11_11750 PF02666 Phosphatidylserine decarboxylase HLY11_11755 PF12794 Mechanosensitive ion channel inner membrane domain 1 HLY11_11755 PF12795 Mechanosensitive ion channel porin domain HLY11_11755 PF00924 Mechanosensitive ion channel HLY11_11760 PF13520 Amino acid permease HLY11_11765 PF00152 tRNA synthetases class II (D, K and N) HLY11_11770 PF00890 FAD binding domain HLY11_11770 PF02910 Fumarate reductase flavoprotein C-term HLY11_11775 PF13085 2Fe-2S iron-sulfur cluster binding domain HLY11_11775 PF13183 4Fe-4S dicluster domain HLY11_11780 PF02300 Fumarate reductase subunit C HLY11_11785 PF02313 Fumarate reductase subunit D HLY11_11790 PF08212 Lipocalin-like domain HLY11_11795 PF00893 Small Multidrug Resistance protein HLY11_11800 PF08085 Entericidin EcnA/B family HLY11_11805 PF08085 Entericidin EcnA/B family HLY11_11810 PF01132 Elongation factor P (EF-P) OB domain HLY11_11810 PF08207 Elongation factor P (EF-P) KOW-like domain HLY11_11810 PF09285 Elongation factor P, C-terminal HLY11_11815 PF04055 Radical SAM superfamily HLY11_11820 PF15922 YjeJ-like HLY11_11825 PF13698 Domain of unknown function (DUF4156) HLY11_11830 PF00118 TCP-1/cpn60 chaperonin family HLY11_11835 PF00166 Chaperonin 10 Kd subunit HLY11_11840 PF13520 Amino acid permease HLY11_11845 PF04186 FxsA cytoplasmic membrane protein HLY11_11850 PF10415 Fumarase C C-terminus HLY11_11850 PF00206 Lyase HLY11_11855 PF03605 Anaerobic c4-dicarboxylate membrane transporter HLY11_11860 PF03091 CutA1 divalent ion tolerance protein HLY11_11865 PF11412 Disulphide bond corrector protein DsbC HLY11_11865 PF02683 Cytochrome C biogenesis protein transmembrane region HLY11_11880 PF18500 CadC C-terminal domain 1 HLY11_11880 PF00486 Transcriptional regulatory protein, C terminal HLY11_11885 PF13520 Amino acid permease HLY11_11890 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HLY11_11890 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HLY11_11890 PF01276 Orn/Lys/Arg decarboxylase, major domain HLY11_11895 PF00854 POT family HLY11_11900 PF00152 tRNA synthetases class II (D, K and N) HLY11_11900 PF01336 OB-fold nucleic acid binding domain HLY11_11905 PF10753 Toxin GhoT_OrtT HLY11_11910 PF11080 Endoribonuclease GhoS HLY11_11915 PF14542 GCN5-related N-acetyl-transferase HLY11_11920 PF06902 Divergent 4Fe-4S mono-cluster HLY11_11925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_11925 PF00989 PAS fold HLY11_11925 PF17203 Single cache domain 3 HLY11_11925 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HLY11_11930 PF00072 Response regulator receiver domain HLY11_11935 PF03605 Anaerobic c4-dicarboxylate membrane transporter HLY11_11940 PF05681 Fumarate hydratase (Fumerase) HLY11_11940 PF05683 Fumarase C-terminus HLY11_11945 PF09997 Predicted membrane protein (DUF2238) HLY11_11950 PF02056 Family 4 glycosyl hydrolase HLY11_11950 PF11975 Family 4 glycosyl hydrolase C-terminal domain HLY11_11955 PF12833 Helix-turn-helix domain HLY11_11960 PF01276 Orn/Lys/Arg decarboxylase, major domain HLY11_11960 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HLY11_11960 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HLY11_11965 PF12833 Helix-turn-helix domain HLY11_11970 PF13520 Amino acid permease HLY11_11975 PF00884 Sulfatase HLY11_11975 PF08019 Phosphoethanolamine transferase EptA/EptB HLY11_11980 PF00072 Response regulator receiver domain HLY11_11980 PF00486 Transcriptional regulatory protein, C terminal HLY11_11985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_11985 PF00512 His Kinase A (phospho-acceptor) domain HLY11_11995 PF00083 Sugar (and other) transporter HLY11_11995 PF08946 Osmosensory transporter coiled coil HLY11_12000 PF13990 YjcZ-like protein HLY11_12005 PF00350 Dynamin family HLY11_12010 PF08274 PhnA Zinc-Ribbon HLY11_12010 PF03831 PhnA domain HLY11_12015 PF06983 3-demethylubiquinone-9 3-methyltransferase HLY11_12020 PF00583 Acetyltransferase (GNAT) family HLY11_12030 PF13188 PAS domain HLY11_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_12030 PF00072 Response regulator receiver domain HLY11_12030 PF08448 PAS fold HLY11_12030 PF00512 His Kinase A (phospho-acceptor) domain HLY11_12035 PF00005 ABC transporter HLY11_12040 PF02653 Branched-chain amino acid transport system / permease component HLY11_12045 PF13407 Periplasmic binding protein domain HLY11_12055 PF01116 Fructose-bisphosphate aldolase class-II HLY11_12065 PF00072 Response regulator receiver domain HLY11_12065 PF00486 Transcriptional regulatory protein, C terminal HLY11_12070 PF00753 Metallo-beta-lactamase superfamily HLY11_12070 PF14864 Alkyl sulfatase C-terminal HLY11_12070 PF14863 Alkyl sulfatase dimerisation HLY11_12075 PF17090 Uncharacterised protein family HLY11_12080 PF00529 HlyD membrane-fusion protein of T1SS HLY11_12080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_12085 PF04632 Fusaric acid resistance protein family HLY11_12090 PF02321 Outer membrane efflux protein HLY11_12100 PF08238 Sel1 repeat HLY11_12110 PF00375 Sodium:dicarboxylate symporter family HLY11_12120 PF03918 Cytochrome C biogenesis protein HLY11_12125 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HLY11_12125 PF01578 Cytochrome C assembly protein HLY11_12130 PF03916 Polysulphide reductase, NrfD HLY11_12135 PF00037 4Fe-4S binding domain HLY11_12135 PF13247 4Fe-4S dicluster domain HLY11_12140 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HLY11_12140 PF13435 Cytochrome c554 and c-prime HLY11_12145 PF02335 Cytochrome c552 HLY11_12150 PF13193 AMP-binding enzyme C-terminal domain HLY11_12150 PF00501 AMP-binding enzyme HLY11_12150 PF16177 Acetyl-coenzyme A synthetase N-terminus HLY11_12155 PF04341 Protein of unknown function, DUF485 HLY11_12160 PF00474 Sodium:solute symporter family HLY11_12165 PF00805 Pentapeptide repeats (8 copies) HLY11_12170 PF00999 Sodium/hydrogen exchanger family HLY11_12175 PF00860 Permease family HLY11_12180 PF00376 MerR family regulatory protein HLY11_12180 PF09278 MerR, DNA binding HLY11_12185 PF12833 Helix-turn-helix domain HLY11_12190 PF12792 CSS motif domain associated with EAL HLY11_12190 PF00563 EAL domain HLY11_12195 PF15940 Family of unknown function HLY11_12205 PF00436 Single-strand binding protein family HLY11_12210 PF00005 ABC transporter HLY11_12210 PF17755 UvrA DNA-binding domain HLY11_12210 PF17760 UvrA interaction domain HLY11_12215 PF04237 YjbR HLY11_12220 PF01894 Uncharacterised protein family UPF0047 HLY11_12225 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HLY11_12235 PF00155 Aminotransferase class I and II HLY11_12240 PF01381 Helix-turn-helix HLY11_12240 PF13521 AAA domain HLY11_12245 PF04973 Nicotinamide mononucleotide transporter HLY11_12250 PF00842 Alanine racemase, C-terminal domain HLY11_12250 PF01168 Alanine racemase, N-terminal domain HLY11_12255 PF03796 DnaB-like helicase C terminal domain HLY11_12255 PF00772 DnaB-like helicase N terminal domain HLY11_12260 PF00107 Zinc-binding dehydrogenase HLY11_12260 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_12265 PF09583 Phage shock protein G (Phageshock_PspG) HLY11_12270 PF01207 Dihydrouridine synthase (Dus) HLY11_12275 PF10897 Protein of unknown function (DUF2713) HLY11_12280 PF01475 Ferric uptake regulator family HLY11_12285 PF05532 CsbD-like HLY11_12290 PF01554 MatE HLY11_12295 PF00717 Peptidase S24-like HLY11_12295 PF01726 LexA DNA binding domain HLY11_12300 PF01219 Prokaryotic diacylglycerol kinase HLY11_12305 PF01553 Acyltransferase HLY11_12310 PF01040 UbiA prenyltransferase family HLY11_12315 PF04345 Chorismate lyase HLY11_12320 PF13981 SopA-like central domain HLY11_12320 PF13599 Pentapeptide repeats (9 copies) HLY11_12325 PF07148 Maltose operon periplasmic protein precursor (MalM) HLY11_12330 PF02264 LamB porin HLY11_12335 PF17912 MalK OB fold domain HLY11_12335 PF00005 ABC transporter HLY11_12340 PF01547 Bacterial extracellular solute-binding protein HLY11_12345 PF14785 Maltose transport system permease protein MalF P2 domain HLY11_12345 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_12350 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_12355 PF06146 Phosphate-starvation-inducible E HLY11_12360 PF17089 Uncharacterised protein family HLY11_12365 PF06082 Exopolysaccharide biosynthesis protein YbjH HLY11_12370 PF06251 Capsule biosynthesis GfcC HLY11_12375 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HLY11_12380 PF11106 Exopolysaccharide production protein YjbE HLY11_12385 PF00342 Phosphoglucose isomerase HLY11_12390 PF00696 Amino acid kinase family HLY11_12390 PF01842 ACT domain HLY11_12395 PF11656 YjbD family (DUF3811) HLY11_12400 PF01479 S4 domain HLY11_12400 PF00849 RNA pseudouridylate synthase HLY11_12405 PF13936 Helix-turn-helix domain HLY11_12405 PF04198 Putative sugar-binding domain HLY11_12410 PF00106 short chain dehydrogenase HLY11_12415 PF03610 PTS system fructose IIA component HLY11_12420 PF03830 PTS system sorbose subfamily IIB component HLY11_12425 PF03609 PTS system sorbose-specific iic component HLY11_12430 PF03613 PTS system mannose/fructose/sorbose family IID component HLY11_12435 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_12435 PF00107 Zinc-binding dehydrogenase HLY11_12440 PF03575 Peptidase family S51 HLY11_12445 PF02690 Na+/Pi-cotransporter HLY11_12450 PF02965 Vitamin B12 dependent methionine synthase, activation domain HLY11_12450 PF00809 Pterin binding enzyme HLY11_12450 PF02574 Homocysteine S-methyltransferase HLY11_12450 PF02310 B12 binding domain HLY11_12450 PF02607 B12 binding domain HLY11_12455 PF01614 Bacterial transcriptional regulator HLY11_12455 PF09339 IclR helix-turn-helix domain HLY11_12460 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HLY11_12465 PF00463 Isocitrate lyase family HLY11_12470 PF01274 Malate synthase HLY11_12475 PF04204 Homoserine O-succinyltransferase HLY11_12480 PF13673 Acetyltransferase (GNAT) domain HLY11_12505 PF01808 AICARFT/IMPCHase bienzyme HLY11_12505 PF02142 MGS-like domain HLY11_12510 PF02843 Phosphoribosylglycinamide synthetase, C domain HLY11_12510 PF02844 Phosphoribosylglycinamide synthetase, N domain HLY11_12510 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HLY11_12515 PF00072 Response regulator receiver domain HLY11_12515 PF00158 Sigma-54 interaction domain HLY11_12515 PF02954 Bacterial regulatory protein, Fis family HLY11_12520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_12520 PF00512 His Kinase A (phospho-acceptor) domain HLY11_12525 PF13801 Heavy-metal resistance HLY11_12530 PF07356 Protein of unknown function (DUF1481) HLY11_12535 PF00216 Bacterial DNA-binding protein HLY11_12540 PF04222 Protein of unknown function (DUF416) HLY11_12545 PF04493 Endonuclease V HLY11_12550 PF01208 Uroporphyrinogen decarboxylase (URO-D) HLY11_12555 PF09297 NADH pyrophosphatase zinc ribbon domain HLY11_12555 PF00293 NUDIX domain HLY11_12560 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HLY11_12565 PF13667 ThiC-associated domain HLY11_12565 PF01964 Radical SAM ThiC family HLY11_12570 PF02581 Thiamine monophosphate synthase HLY11_12575 PF00899 ThiF family HLY11_12580 PF02597 ThiS family HLY11_12585 PF05690 Thiazole biosynthesis protein ThiG HLY11_12590 PF06968 Biotin and Thiamin Synthesis associated domain HLY11_12590 PF04055 Radical SAM superfamily HLY11_12600 PF04998 RNA polymerase Rpb1, domain 5 HLY11_12600 PF05000 RNA polymerase Rpb1, domain 4 HLY11_12600 PF04983 RNA polymerase Rpb1, domain 3 HLY11_12600 PF00623 RNA polymerase Rpb1, domain 2 HLY11_12600 PF04997 RNA polymerase Rpb1, domain 1 HLY11_12605 PF04560 RNA polymerase Rpb2, domain 7 HLY11_12605 PF04561 RNA polymerase Rpb2, domain 2 HLY11_12605 PF04563 RNA polymerase beta subunit HLY11_12605 PF04565 RNA polymerase Rpb2, domain 3 HLY11_12605 PF10385 RNA polymerase beta subunit external 1 domain HLY11_12605 PF00562 RNA polymerase Rpb2, domain 6 HLY11_12610 PF16320 Ribosomal protein L7/L12 dimerisation domain HLY11_12610 PF00542 Ribosomal protein L7/L12 C-terminal domain HLY11_12615 PF00466 Ribosomal protein L10 HLY11_12620 PF00687 Ribosomal protein L1p/L10e family HLY11_12625 PF03946 Ribosomal protein L11, N-terminal domain HLY11_12625 PF00298 Ribosomal protein L11, RNA binding domain HLY11_12630 PF02357 Transcription termination factor nusG HLY11_12630 PF00467 KOW motif HLY11_12635 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HLY11_12640 PF03144 Elongation factor Tu domain 2 HLY11_12640 PF00009 Elongation factor Tu GTP binding domain HLY11_12640 PF03143 Elongation factor Tu C-terminal domain HLY11_12665 PF00485 Phosphoribulokinase / Uridine kinase family HLY11_12670 PF03099 Biotin/lipoate A/B protein ligase family HLY11_12670 PF02237 Biotin protein ligase C terminal domain HLY11_12670 PF08279 HTH domain HLY11_12675 PF01565 FAD binding domain HLY11_12675 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HLY11_12700 PF01177 Asp/Glu/Hydantoin racemase HLY11_12705 PF07715 TonB-dependent Receptor Plug Domain HLY11_12705 PF00593 TonB dependent receptor HLY11_12710 PF05958 tRNA (Uracil-5-)-methyltransferase HLY11_12715 PF07226 Protein of unknown function (DUF1422) HLY11_12720 PF00440 Bacterial regulatory proteins, tetR family HLY11_12725 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_12725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HLY11_12730 PF03466 LysR substrate binding domain HLY11_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_12735 PF07690 Major Facilitator Superfamily HLY11_12740 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HLY11_12740 PF13378 Enolase C-terminal domain-like HLY11_12745 PF14698 Argininosuccinate lyase C-terminal HLY11_12745 PF00206 Lyase HLY11_12750 PF00696 Amino acid kinase family HLY11_12755 PF02774 Semialdehyde dehydrogenase, dimerisation domain HLY11_12755 PF01118 Semialdehyde dehydrogenase, NAD binding domain HLY11_12760 PF07687 Peptidase dimerisation domain HLY11_12760 PF01546 Peptidase family M20/M25/M40 HLY11_12765 PF00311 Phosphoenolpyruvate carboxylase HLY11_12770 PF00884 Sulfatase HLY11_12775 PF12833 Helix-turn-helix domain HLY11_12780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_12785 PF04055 Radical SAM superfamily HLY11_12795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_12805 PF02896 PEP-utilising enzyme, TIM barrel domain HLY11_12805 PF05524 PEP-utilising enzyme, N-terminal HLY11_12805 PF00391 PEP-utilising enzyme, mobile domain HLY11_12805 PF00381 PTS HPr component phosphorylation site HLY11_12805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_12810 PF00923 Transaldolase/Fructose-6-phosphate aldolase HLY11_12815 PF00465 Iron-containing alcohol dehydrogenase HLY11_12820 PF06940 Domain of unknown function (DUF1287) HLY11_12825 PF00892 EamA-like transporter family HLY11_12830 PF00141 Peroxidase HLY11_12835 PF02219 Methylenetetrahydrofolate reductase HLY11_12840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HLY11_12840 PF00367 phosphotransferase system, EIIB HLY11_12840 PF02378 Phosphotransferase system, EIIC HLY11_12845 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_12845 PF00356 Bacterial regulatory proteins, lacI family HLY11_12850 PF00155 Aminotransferase class I and II HLY11_12850 PF00392 Bacterial regulatory proteins, gntR family HLY11_12855 PF00842 Alanine racemase, C-terminal domain HLY11_12855 PF01168 Alanine racemase, N-terminal domain HLY11_12865 PF00149 Calcineurin-like phosphoesterase HLY11_12865 PF02872 5'-nucleotidase, C-terminal domain HLY11_12875 PF00696 Amino acid kinase family HLY11_12875 PF00742 Homoserine dehydrogenase HLY11_12875 PF03447 Homoserine dehydrogenase, NAD binding domain HLY11_12880 PF01053 Cys/Met metabolism PLP-dependent enzyme HLY11_12885 PF01340 Met Apo-repressor, MetJ HLY11_12890 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family HLY11_12895 PF01197 Ribosomal protein L31 HLY11_12900 PF18074 Primosomal protein N C-terminal domain HLY11_12900 PF17764 3′ DNA-binding domain (3′BD) HLY11_12900 PF00271 Helicase conserved C-terminal domain HLY11_12900 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HLY11_12900 PF00270 DEAD/DEAH box helicase HLY11_12905 PF00356 Bacterial regulatory proteins, lacI family HLY11_12910 PF05036 Sporulation related domain HLY11_12915 PF00227 Proteasome subunit HLY11_12920 PF07724 AAA domain (Cdc48 subfamily) HLY11_12920 PF10431 C-terminal, D2-small domain, of ClpB protein HLY11_12920 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_12925 PF01040 UbiA prenyltransferase family HLY11_12930 PF03737 Aldolase/RraA HLY11_12945 PF06005 Cell division protein ZapB HLY11_12950 PF00230 Major intrinsic protein HLY11_12955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_12955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_12960 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HLY11_12965 PF00175 Oxidoreductase NAD-binding domain HLY11_12965 PF00970 Oxidoreductase FAD-binding domain HLY11_12970 PF00582 Universal stress protein family HLY11_12975 PF04175 Protein of unknown function (DUF406) HLY11_12980 PF05656 Protein of unknown function (DUF805) HLY11_12985 PF07305 Protein of unknown function (DUF1454) HLY11_12990 PF00121 Triosephosphate isomerase HLY11_12995 PF02611 CDP-diacylglycerol pyrophosphatase HLY11_13005 PF00365 Phosphofructokinase HLY11_13010 PF01545 Cation efflux family HLY11_13010 PF16916 Dimerisation domain of Zinc Transporter HLY11_13015 PF07813 LTXXQ motif family protein HLY11_13020 PF00072 Response regulator receiver domain HLY11_13020 PF00486 Transcriptional regulatory protein, C terminal HLY11_13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_13025 PF00672 HAMP domain HLY11_13025 PF00512 His Kinase A (phospho-acceptor) domain HLY11_13025 PF16527 Two-component sensor protein CpxA, periplasmic domain HLY11_13030 PF03475 3-alpha domain HLY11_13030 PF03473 MOSC domain HLY11_13035 PF03812 2-keto-3-deoxygluconate permease HLY11_13040 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HLY11_13040 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HLY11_13045 PF06379 L-rhamnose-proton symport protein (RhaT) HLY11_13050 PF02311 AraC-like ligand binding domain HLY11_13050 PF12833 Helix-turn-helix domain HLY11_13055 PF12833 Helix-turn-helix domain HLY11_13055 PF02311 AraC-like ligand binding domain HLY11_13060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_13060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_13065 PF06134 L-rhamnose isomerase (RhaA) HLY11_13070 PF00596 Class II Aldolase and Adducin N-terminal domain HLY11_13075 PF05336 L-rhamnose mutarotase HLY11_13085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_13090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_13090 PF02378 Phosphotransferase system, EIIC HLY11_13095 PF05343 M42 glutamyl aminopeptidase HLY11_13100 PF08279 HTH domain HLY11_13100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_13105 PF12889 Protein of unknown function (DUF3829) HLY11_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_13115 PF00183 Hsp90 protein HLY11_13120 PF02634 FdhD/NarQ family HLY11_13130 PF13247 4Fe-4S dicluster domain HLY11_13130 PF09163 Formate dehydrogenase N, transmembrane HLY11_13135 PF01292 Prokaryotic cytochrome b561 HLY11_13140 PF04216 Protein involved in formate dehydrogenase formation HLY11_13150 PF01402 Ribbon-helix-helix protein, copG family HLY11_13160 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system HLY11_13165 PF07859 alpha/beta hydrolase fold HLY11_13175 PF00583 Acetyltransferase (GNAT) family HLY11_13175 PF09500 Putative thioesterase (yiiD_Cterm) HLY11_13180 PF02580 D-Tyr-tRNA(Tyr) deacylase HLY11_13185 PF03631 Virulence factor BrkB HLY11_13190 PF13419 Haloacid dehalogenase-like hydrolase HLY11_13195 PF08220 DeoR-like helix-turn-helix domain HLY11_13195 PF00455 DeoR C terminal sensor domain HLY11_13200 PF00294 pfkB family carbohydrate kinase HLY11_13205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HLY11_13205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HLY11_13210 PF01791 DeoC/LacD family aldolase HLY11_13220 PF01263 Aldose 1-epimerase HLY11_13230 PF01055 Glycosyl hydrolases family 31 HLY11_13245 PF06178 Oligogalacturonate-specific porin protein (KdgM) HLY11_13265 PF06969 HemN C-terminal domain HLY11_13265 PF04055 Radical SAM superfamily HLY11_13285 PF00120 Glutamine synthetase, catalytic domain HLY11_13285 PF03951 Glutamine synthetase, beta-Grasp domain HLY11_13290 PF00989 PAS fold HLY11_13290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_13290 PF00512 His Kinase A (phospho-acceptor) domain HLY11_13295 PF02954 Bacterial regulatory protein, Fis family HLY11_13295 PF00072 Response regulator receiver domain HLY11_13295 PF00158 Sigma-54 interaction domain HLY11_13305 PF06969 HemN C-terminal domain HLY11_13305 PF04055 Radical SAM superfamily HLY11_13310 PF04220 Der GTPase activator (YihI) HLY11_13315 PF01926 50S ribosome-binding GTPase HLY11_13320 PF01612 3'-5' exonuclease HLY11_13320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HLY11_13320 PF01367 5'-3' exonuclease, C-terminal SAM fold HLY11_13320 PF00476 DNA polymerase family A HLY11_13325 PF01553 Acyltransferase HLY11_13330 PF06097 Bacterial protein of unknown function (DUF945) HLY11_13335 PF01323 DSBA-like thioredoxin domain HLY11_13340 PF01636 Phosphotransferase enzyme family HLY11_13345 PF06288 Protein of unknown function (DUF1040) HLY11_13350 PF12804 MobA-like NTP transferase domain HLY11_13355 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HLY11_13385 PF12724 Flavodoxin domain HLY11_13390 PF02386 Cation transport protein HLY11_13395 PF01205 Uncharacterized protein family UPF0029 HLY11_13395 PF09186 Domain of unknown function (DUF1949) HLY11_13400 PF00557 Metallopeptidase family M24 HLY11_13405 PF00378 Enoyl-CoA hydratase/isomerase HLY11_13405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HLY11_13405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HLY11_13410 PF00108 Thiolase, N-terminal domain HLY11_13410 PF02803 Thiolase, C-terminal domain HLY11_13415 PF00970 Oxidoreductase FAD-binding domain HLY11_13415 PF00175 Oxidoreductase NAD-binding domain HLY11_13420 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HLY11_13425 PF02357 Transcription termination factor nusG HLY11_13430 PF01026 TatD related DNase HLY11_13435 PF00902 Sec-independent protein translocase protein (TatC) HLY11_13445 PF02416 mttA/Hcf106 family HLY11_13450 PF03109 ABC1 family HLY11_13455 PF02036 SCP-2 sterol transfer family HLY11_13460 PF01209 ubiE/COQ5 methyltransferase family HLY11_13465 PF02646 RmuC family HLY11_13470 PF01048 Phosphorylase superfamily HLY11_13475 PF01738 Dienelactone hydrolase family HLY11_13480 PF08267 Cobalamin-independent synthase, N-terminal domain HLY11_13480 PF01717 Cobalamin-independent synthase, Catalytic domain HLY11_13485 PF03466 LysR substrate binding domain HLY11_13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_13490 PF00892 EamA-like transporter family HLY11_13500 PF12146 Serine aminopeptidase, S33 HLY11_13505 PF01810 LysE type translocator HLY11_13510 PF01810 LysE type translocator HLY11_13515 PF00270 DEAD/DEAH box helicase HLY11_13515 PF00271 Helicase conserved C-terminal domain HLY11_13515 PF00570 HRDC domain HLY11_13515 PF09382 RQC domain HLY11_13515 PF16124 RecQ zinc-binding HLY11_13525 PF02253 Phospholipase A1 HLY11_13530 PF03061 Thioesterase superfamily HLY11_13535 PF00892 EamA-like transporter family HLY11_13545 PF01544 CorA-like Mg2+ transporter protein HLY11_13550 PF09992 Phosphodiester glycosidase HLY11_13555 PF00580 UvrD/REP helicase N-terminal domain HLY11_13555 PF13361 UvrD-like helicase C-terminal domain HLY11_13560 PF13419 Haloacid dehalogenase-like hydrolase HLY11_13565 PF02899 Phage integrase, N-terminal SAM-like domain HLY11_13565 PF00589 Phage integrase family HLY11_13570 PF04340 Protein of unknown function, DUF484 HLY11_13575 PF01678 Diaminopimelate epimerase HLY11_13580 PF13627 Prokaryotic lipoprotein-attachment site HLY11_13595 PF01491 Frataxin-like domain HLY11_13600 PF12633 Adenylate cyclase NT domain HLY11_13600 PF01295 Adenylate cyclase, class-I HLY11_13605 PF03900 Porphobilinogen deaminase, C-terminal domain HLY11_13605 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HLY11_13610 PF02602 Uroporphyrinogen-III synthase HemD HLY11_13615 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HLY11_13620 PF07219 HemY protein N-terminus HLY11_13620 PF07719 Tetratricopeptide repeat HLY11_13630 PF00884 Sulfatase HLY11_13635 PF04055 Radical SAM superfamily HLY11_13635 PF13186 Iron-sulfur cluster-binding domain HLY11_13660 PF00324 Amino acid permease HLY11_13665 PF03808 Glycosyl transferase WecB/TagA/CpsF family HLY11_13670 PF06899 WzyE protein, O-antigen assembly polymerase HLY11_13675 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 HLY11_13680 PF01943 Polysaccharide biosynthesis protein HLY11_13685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HLY11_13695 PF00483 Nucleotidyl transferase HLY11_13700 PF16363 GDP-mannose 4,6 dehydratase HLY11_13705 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HLY11_13705 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HLY11_13705 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HLY11_13710 PF02350 UDP-N-acetylglucosamine 2-epimerase HLY11_13715 PF02706 Chain length determinant protein HLY11_13720 PF00953 Glycosyl transferase family 4 HLY11_13725 PF07498 Rho termination factor, N-terminal domain HLY11_13725 PF07497 Rho termination factor, RNA-binding domain HLY11_13725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HLY11_13735 PF00085 Thioredoxin HLY11_13740 PF00270 DEAD/DEAH box helicase HLY11_13740 PF00271 Helicase conserved C-terminal domain HLY11_13745 PF02541 Ppx/GppA phosphatase family HLY11_13750 PF00580 UvrD/REP helicase N-terminal domain HLY11_13750 PF13361 UvrD-like helicase C-terminal domain HLY11_13755 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HLY11_13765 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HLY11_13765 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HLY11_13770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_13770 PF03466 LysR substrate binding domain HLY11_13775 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_13775 PF00585 C-terminal regulatory domain of Threonine dehydratase HLY11_13780 PF00920 Dehydratase family HLY11_13785 PF01063 Amino-transferase class IV HLY11_13795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_13795 PF00205 Thiamine pyrophosphate enzyme, central domain HLY11_13795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_13805 PF08046 IlvGEDA operon leader peptide HLY11_13810 PF13335 Magnesium chelatase, subunit ChlI C-terminal HLY11_13810 PF01078 Magnesium chelatase, subunit ChlI HLY11_13815 PF04219 Protein of unknown function, DUF HLY11_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_13820 PF03466 LysR substrate binding domain HLY11_13855 PF00392 Bacterial regulatory proteins, gntR family HLY11_13855 PF07729 FCD domain HLY11_13860 PF07690 Major Facilitator Superfamily HLY11_13865 PF00356 Bacterial regulatory proteins, lacI family HLY11_13870 PF00294 pfkB family carbohydrate kinase HLY11_13875 PF13407 Periplasmic binding protein domain HLY11_13880 PF02653 Branched-chain amino acid transport system / permease component HLY11_13885 PF00005 ABC transporter HLY11_13890 PF05025 RbsD / FucU transport protein family HLY11_13895 PF02705 K+ potassium transporter HLY11_13900 PF07728 AAA domain (dynein-related subfamily) HLY11_13900 PF12592 Protein of unknown function (DUF3763) HLY11_13900 PF17868 AAA lid domain HLY11_13905 PF05762 VWA domain containing CoxE-like protein HLY11_13910 PF03590 Aspartate-ammonia ligase HLY11_13915 PF01037 Lrp/AsnC ligand binding domain HLY11_13920 PF00258 Flavodoxin HLY11_13925 PF01134 Glucose inhibited division protein A HLY11_13925 PF13932 GidA associated domain HLY11_13930 PF02527 rRNA small subunit methyltransferase G HLY11_13935 PF03899 ATP synthase I chain HLY11_13940 PF00119 ATP synthase A chain HLY11_13945 PF00137 ATP synthase subunit C HLY11_13950 PF00430 ATP synthase B/B' CF(0) HLY11_13955 PF00213 ATP synthase delta (OSCP) subunit HLY11_13960 PF02874 ATP synthase alpha/beta family, beta-barrel domain HLY11_13960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HLY11_13960 PF00306 ATP synthase alpha/beta chain, C terminal domain HLY11_13965 PF00231 ATP synthase HLY11_13970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HLY11_13970 PF02874 ATP synthase alpha/beta family, beta-barrel domain HLY11_13975 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HLY11_13975 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HLY11_13980 PF12804 MobA-like NTP transferase domain HLY11_13980 PF14602 Hexapeptide repeat of succinyl-transferase HLY11_13980 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_13985 PF01380 SIS domain HLY11_13990 PF12849 PBP superfamily domain HLY11_13995 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_14000 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_14005 PF00005 ABC transporter HLY11_14010 PF01895 PhoU domain HLY11_14020 PF06551 Protein of unknown function (DUF1120) HLY11_14025 PF06551 Protein of unknown function (DUF1120) HLY11_14030 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_14035 PF13954 PapC N-terminal domain HLY11_14035 PF13953 PapC C-terminal domain HLY11_14035 PF00577 Outer membrane usher protein HLY11_14065 PF13419 Haloacid dehalogenase-like hydrolase HLY11_14070 PF00860 Permease family HLY11_14075 PF03358 NADPH-dependent FMN reductase HLY11_14085 PF03466 LysR substrate binding domain HLY11_14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_14090 PF07690 Major Facilitator Superfamily HLY11_14095 PF03222 Tryptophan/tyrosine permease family HLY11_14100 PF01212 Beta-eliminating lyase HLY11_14105 PF08053 Tryptophanase operon leader peptide HLY11_14115 PF12631 MnmE helical domain HLY11_14115 PF01926 50S ribosome-binding GTPase HLY11_14115 PF10396 GTP-binding protein TrmE N-terminus HLY11_14120 PF02096 60Kd inner membrane protein HLY11_14120 PF14849 YidC periplasmic domain HLY11_14125 PF01809 Putative membrane protein insertion efficiency factor HLY11_14130 PF00825 Ribonuclease P HLY11_14135 PF00468 Ribosomal protein L34 HLY11_14145 PF00308 Bacterial dnaA protein HLY11_14145 PF08299 Bacterial dnaA protein helix-turn-helix HLY11_14145 PF11638 DnaA N-terminal domain HLY11_14150 PF02767 DNA polymerase III beta subunit, central domain HLY11_14150 PF02768 DNA polymerase III beta subunit, C-terminal domain HLY11_14150 PF00712 DNA polymerase III beta subunit, N-terminal domain HLY11_14155 PF02463 RecF/RecN/SMC N terminal domain HLY11_14160 PF00986 DNA gyrase B subunit, carboxyl terminus HLY11_14160 PF01751 Toprim domain HLY11_14160 PF00204 DNA gyrase B HLY11_14160 PF18053 DNA gyrase B subunit insert domain HLY11_14160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_14165 PF06078 Bacterial protein of unknown function (DUF937) HLY11_14180 PF07729 FCD domain HLY11_14180 PF00392 Bacterial regulatory proteins, gntR family HLY11_14185 PF05035 2-keto-3-deoxy-galactonokinase HLY11_14190 PF01081 KDPG and KHG aldolase HLY11_14195 PF13378 Enolase C-terminal domain-like HLY11_14195 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HLY11_14200 PF07690 Major Facilitator Superfamily HLY11_14210 PF12566 Protein of unknown function (DUF3748) HLY11_14210 PF07676 WD40-like Beta Propeller Repeat HLY11_14215 PF07119 Protein of unknown function (DUF1375) HLY11_14220 PF00011 Hsp20/alpha crystallin family HLY11_14225 PF00011 Hsp20/alpha crystallin family HLY11_14230 PF02080 TrkA-C domain HLY11_14230 PF06826 Predicted Permease Membrane Region HLY11_14235 PF00392 Bacterial regulatory proteins, gntR family HLY11_14235 PF07702 UTRA domain HLY11_14240 PF00367 phosphotransferase system, EIIB HLY11_14240 PF02378 Phosphotransferase system, EIIC HLY11_14245 PF11975 Family 4 glycosyl hydrolase C-terminal domain HLY11_14245 PF02056 Family 4 glycosyl hydrolase HLY11_14250 PF02311 AraC-like ligand binding domain HLY11_14250 PF12833 Helix-turn-helix domain HLY11_14255 PF00474 Sodium:solute symporter family HLY11_14260 PF16347 Domain of unknown function (DUF4976) HLY11_14260 PF00884 Sulfatase HLY11_14270 PF02656 Domain of unknown function (DUF202) HLY11_14275 PF02656 Domain of unknown function (DUF202) HLY11_14285 PF07690 Major Facilitator Superfamily HLY11_14290 PF13939 Toxin TisB, type I toxin-antitoxin system HLY11_14295 PF08049 IlvB leader peptide HLY11_14300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_14300 PF00205 Thiamine pyrophosphate enzyme, central domain HLY11_14300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_14305 PF01842 ACT domain HLY11_14320 PF00196 Bacterial regulatory proteins, luxR family HLY11_14320 PF00072 Response regulator receiver domain HLY11_14325 PF07730 Histidine kinase HLY11_14325 PF05231 MASE1 HLY11_14325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_14330 PF07690 Major Facilitator Superfamily HLY11_14335 PF07690 Major Facilitator Superfamily HLY11_14340 PF01979 Amidohydrolase family HLY11_14340 PF13382 Adenine deaminase C-terminal domain HLY11_14345 PF00860 Permease family HLY11_14350 PF06711 Protein of unknown function (DUF1198) HLY11_14365 PF07690 Major Facilitator Superfamily HLY11_14370 PF09134 Invasin, domain 3 HLY11_14370 PF11924 Inverse autotransporter, beta-domain HLY11_14370 PF02369 Bacterial Ig-like domain (group 1) HLY11_14375 PF00486 Transcriptional regulatory protein, C terminal HLY11_14380 PF06511 Type III secretion systems tip complex components HLY11_14400 PF07720 Tetratricopeptide repeat HLY11_14410 PF03180 NLPA lipoprotein HLY11_14415 PF00892 EamA-like transporter family HLY11_14420 PF07690 Major Facilitator Superfamily HLY11_14440 PF01055 Glycosyl hydrolases family 31 HLY11_14440 PF13802 Galactose mutarotase-like HLY11_14445 PF05170 AsmA family HLY11_14450 PF00860 Permease family HLY11_14455 PF03616 Sodium/glutamate symporter HLY11_14460 PF00270 DEAD/DEAH box helicase HLY11_14460 PF00271 Helicase conserved C-terminal domain HLY11_14460 PF17191 RecG wedge domain HLY11_14465 PF00588 SpoU rRNA Methylase family HLY11_14465 PF12105 SpoU, rRNA methylase, C-terminal HLY11_14470 PF13291 ACT domain HLY11_14470 PF04607 Region found in RelA / SpoT proteins HLY11_14470 PF02824 TGS domain HLY11_14475 PF01192 RNA polymerase Rpb6 HLY11_14480 PF00625 Guanylate kinase HLY11_14485 PF03120 NAD-dependent DNA ligase OB-fold domain HLY11_14485 PF01653 NAD-dependent DNA ligase adenylation domain HLY11_14490 PF03458 UPF0126 domain HLY11_14500 PF03755 YicC-like family, N-terminal region HLY11_14500 PF08340 Domain of unknown function (DUF1732) HLY11_14505 PF03725 3' exoribonuclease family, domain 2 HLY11_14505 PF01138 3' exoribonuclease family, domain 1 HLY11_14510 PF00156 Phosphoribosyl transferase domain HLY11_14515 PF00440 Bacterial regulatory proteins, tetR family HLY11_14520 PF00692 dUTPase HLY11_14525 PF02441 Flavoprotein HLY11_14525 PF04127 DNA / pantothenate metabolism flavoprotein HLY11_14530 PF04002 RadC-like JAB domain HLY11_14535 PF00830 Ribosomal L28 family HLY11_14540 PF00471 Ribosomal protein L33 HLY11_14545 PF06827 Zinc finger found in FPG and IleRS HLY11_14545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HLY11_14545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HLY11_14550 PF01467 Cytidylyltransferase-like HLY11_14555 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HLY11_14560 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HLY11_14565 PF13439 Glycosyltransferase Family 4 HLY11_14565 PF00534 Glycosyl transferases group 1 HLY11_14575 PF01501 Glycosyl transferase family 8 HLY11_14575 PF08437 Glycosyl transferase family 8 C-terminal HLY11_14580 PF00534 Glycosyl transferases group 1 HLY11_14580 PF13439 Glycosyltransferase Family 4 HLY11_14585 PF08437 Glycosyl transferase family 8 C-terminal HLY11_14585 PF01501 Glycosyl transferase family 8 HLY11_14590 PF01501 Glycosyl transferase family 8 HLY11_14590 PF08437 Glycosyl transferase family 8 C-terminal HLY11_14595 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) HLY11_14605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HLY11_14610 PF04932 O-Antigen ligase HLY11_14615 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HLY11_14620 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HLY11_14625 PF01370 NAD dependent epimerase/dehydratase family HLY11_14630 PF00155 Aminotransferase class I and II HLY11_14635 PF00107 Zinc-binding dehydrogenase HLY11_14635 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_14640 PF00535 Glycosyl transferase family 2 HLY11_14645 PF04748 Divergent polysaccharide deacetylase HLY11_14650 PF01551 Peptidase family M23 HLY11_14655 PF01676 Metalloenzyme superfamily HLY11_14655 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HLY11_14660 PF00581 Rhodanese-like domain HLY11_14665 PF00462 Glutaredoxin HLY11_14670 PF02556 Preprotein translocase subunit SecB HLY11_14675 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HLY11_14675 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HLY11_14680 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_14680 PF06426 Serine acetyltransferase, N-terminal HLY11_14685 PF00588 SpoU rRNA Methylase family HLY11_14690 PF01070 FMN-dependent dehydrogenase HLY11_14695 PF07729 FCD domain HLY11_14695 PF00392 Bacterial regulatory proteins, gntR family HLY11_14700 PF02652 L-lactate permease HLY11_14705 PF13018 Extended Signal Peptide of Type V secretion system HLY11_14705 PF03895 YadA-like membrane anchor domain HLY11_14705 PF05658 Head domain of trimeric autotransporter adhesin HLY11_14705 PF05662 Coiled stalk of trimeric autotransporter adhesin HLY11_14710 PF11622 Protein of unknown function (DUF3251) HLY11_14715 PF10928 Protein of unknown function (DUF2810) HLY11_14725 PF05068 Mannitol repressor HLY11_14730 PF01232 Mannitol dehydrogenase Rossmann domain HLY11_14730 PF08125 Mannitol dehydrogenase C-terminal domain HLY11_14735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_14735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_14735 PF02378 Phosphotransferase system, EIIC HLY11_14740 PF11742 Protein of unknown function (DUF3302) HLY11_14745 PF00529 HlyD membrane-fusion protein of T1SS HLY11_14745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_14750 PF13417 Glutathione S-transferase, N-terminal domain HLY11_14750 PF00043 Glutathione S-transferase, C-terminal domain HLY11_14755 PF12390 Selenocysteine synthase N terminal HLY11_14755 PF03841 L-seryl-tRNA selenium transferase HLY11_14760 PF09106 Elongation factor SelB, winged helix HLY11_14760 PF03144 Elongation factor Tu domain 2 HLY11_14760 PF09107 Elongation factor SelB, winged helix HLY11_14760 PF00009 Elongation factor Tu GTP binding domain HLY11_14770 PF00171 Aldehyde dehydrogenase family HLY11_14780 PF11742 Protein of unknown function (DUF3302) HLY11_14785 PF00529 HlyD membrane-fusion protein of T1SS HLY11_14785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_14790 PF03466 LysR substrate binding domain HLY11_14795 PF06629 MltA-interacting protein MipA HLY11_14800 PF07944 Beta-L-arabinofuranosidase, GH127 HLY11_14815 PF00596 Class II Aldolase and Adducin N-terminal domain HLY11_14820 PF01261 Xylose isomerase-like TIM barrel HLY11_14825 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HLY11_14830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_14830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_14835 PF03480 Bacterial extracellular solute-binding protein, family 7 HLY11_14840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HLY11_14845 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HLY11_14850 PF04074 YhcH/YjgK/YiaL HLY11_14855 PF02615 Malate/L-lactate dehydrogenase HLY11_14860 PF09339 IclR helix-turn-helix domain HLY11_14860 PF01614 Bacterial transcriptional regulator HLY11_14865 PF13247 4Fe-4S dicluster domain HLY11_14870 PF00155 Aminotransferase class I and II HLY11_14875 PF00128 Alpha amylase, catalytic domain HLY11_14880 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HLY11_14885 PF12833 Helix-turn-helix domain HLY11_14890 PF02653 Branched-chain amino acid transport system / permease component HLY11_14895 PF00005 ABC transporter HLY11_14900 PF13407 Periplasmic binding protein domain HLY11_14910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_14910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_14915 PF05360 yiaA/B two helix domain HLY11_14920 PF05360 yiaA/B two helix domain HLY11_14925 PF01757 Acyltransferase family HLY11_14930 PF13983 YsaB-like lipoprotein HLY11_14935 PF02091 Glycyl-tRNA synthetase alpha subunit HLY11_14940 PF02092 Glycyl-tRNA synthetase beta subunit HLY11_14940 PF05746 DALR anticodon binding domain HLY11_14965 PF00313 'Cold-shock' DNA-binding domain HLY11_14970 PF01381 Helix-turn-helix HLY11_14975 PF11254 Protein of unknown function (DUF3053) HLY11_14980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HLY11_14980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HLY11_14985 PF00691 OmpA family HLY11_14985 PF13488 Glycine zipper HLY11_14990 PF18364 Molybdopterin oxidoreductase N-terminal domain HLY11_14990 PF01568 Molydopterin dinucleotide binding domain HLY11_14990 PF00384 Molybdopterin oxidoreductase HLY11_14995 PF00583 Acetyltransferase (GNAT) family HLY11_15000 PF03352 Methyladenine glycosylase HLY11_15005 PF03797 Autotransporter beta-domain HLY11_15010 PF07690 Major Facilitator Superfamily HLY11_15015 PF00419 Fimbrial protein HLY11_15020 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_15020 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_15025 PF00577 Outer membrane usher protein HLY11_15025 PF13953 PapC C-terminal domain HLY11_15025 PF13954 PapC N-terminal domain HLY11_15030 PF00419 Fimbrial protein HLY11_15035 PF00419 Fimbrial protein HLY11_15040 PF00884 Sulfatase HLY11_15040 PF08019 Phosphoethanolamine transferase EptA/EptB HLY11_15050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_15055 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_15060 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_15060 PF12911 N-terminal TM domain of oligopeptide transport permease C HLY11_15065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_15065 PF00005 ABC transporter HLY11_15070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_15070 PF00005 ABC transporter HLY11_15075 PF03222 Tryptophan/tyrosine permease family HLY11_15080 PF13940 Toxin Ldr, type I toxin-antitoxin system HLY11_15085 PF13940 Toxin Ldr, type I toxin-antitoxin system HLY11_15090 PF13940 Toxin Ldr, type I toxin-antitoxin system HLY11_15095 PF11658 Cellulose biosynthesis protein BcsG HLY11_15100 PF11120 Cellulose biosynthesis protein BcsF HLY11_15105 PF10995 Cellulose biosynthesis GIL HLY11_15110 PF10945 Cellulose biosynthesis protein BcsR HLY11_15115 PF06564 Cellulose biosynthesis protein BcsQ HLY11_15120 PF00535 Glycosyl transferase family 2 HLY11_15120 PF03552 Cellulose synthase HLY11_15120 PF07238 PilZ domain HLY11_15125 PF03170 Bacterial cellulose synthase subunit HLY11_15130 PF01270 Glycosyl hydrolases family 8 HLY11_15135 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HLY11_15140 PF17154 Gammaproteobacterial periplasmic sensor domain HLY11_15140 PF00563 EAL domain HLY11_15140 PF00672 HAMP domain HLY11_15140 PF00990 Diguanylate cyclase, GGDEF domain HLY11_15145 PF00375 Sodium:dicarboxylate symporter family HLY11_15150 PF05193 Peptidase M16 inactive domain HLY11_15150 PF00675 Insulinase (Peptidase family M16) HLY11_15180 PF00294 pfkB family carbohydrate kinase HLY11_15185 PF00563 EAL domain HLY11_15190 PF05170 AsmA family HLY11_15195 PF00083 Sugar (and other) transporter HLY11_15195 PF07690 Major Facilitator Superfamily HLY11_15200 PF03631 Virulence factor BrkB HLY11_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_15205 PF03466 LysR substrate binding domain HLY11_15210 PF00196 Bacterial regulatory proteins, luxR family HLY11_15215 PF01204 Trehalase HLY11_15220 PF00034 Cytochrome c HLY11_15220 PF14376 Haem-binding domain HLY11_15220 PF03150 Di-haem cytochrome c peroxidase HLY11_15225 PF00282 Pyridoxal-dependent decarboxylase conserved domain HLY11_15230 PF12833 Helix-turn-helix domain HLY11_15235 PF12833 Helix-turn-helix domain HLY11_15240 PF00873 AcrB/AcrD/AcrF family HLY11_15245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_15245 PF00529 HlyD membrane-fusion protein of T1SS HLY11_15255 PF00196 Bacterial regulatory proteins, luxR family HLY11_15260 PF03729 Short repeat of unknown function (DUF308) HLY11_15265 PF06411 HdeA/HdeB family HLY11_15270 PF06411 HdeA/HdeB family HLY11_15275 PF02308 MgtC family HLY11_15280 PF00196 Bacterial regulatory proteins, luxR family HLY11_15285 PF03843 Outer membrane lipoprotein Slp family HLY11_15295 PF03960 ArsC family HLY11_15300 PF02040 Arsenical pump membrane protein HLY11_15305 PF01022 Bacterial regulatory protein, arsR family HLY11_15310 PF12323 Helix-turn-helix domain HLY11_15310 PF01385 Probable transposase HLY11_15310 PF07282 Putative transposase DNA-binding domain HLY11_15315 PF01797 Transposase IS200 like HLY11_15325 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_15325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HLY11_15330 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HLY11_15335 PF01432 Peptidase family M3 HLY11_15340 PF04445 Putative SAM-dependent methyltransferase HLY11_15345 PF00854 POT family HLY11_15350 PF00582 Universal stress protein family HLY11_15355 PF10625 Universal stress protein B (UspB) HLY11_15360 PF01384 Phosphate transporter family HLY11_15370 PF10951 Protein of unknown function (DUF2776) HLY11_15375 PF13258 Domain of unknown function (DUF4049) HLY11_15380 PF13258 Domain of unknown function (DUF4049) HLY11_15385 PF13533 Biotin-lipoyl like HLY11_15390 PF00005 ABC transporter HLY11_15410 PF08753 NikR C terminal nickel binding domain HLY11_15410 PF01402 Ribbon-helix-helix protein, copG family HLY11_15415 PF00005 ABC transporter HLY11_15420 PF00005 ABC transporter HLY11_15425 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_15430 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_15435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_15440 PF01648 4'-phosphopantetheinyl transferase superfamily HLY11_15445 PF01594 AI-2E family transporter HLY11_15450 PF07690 Major Facilitator Superfamily HLY11_15455 PF08786 DcrB HLY11_15460 PF02592 Putative vitamin uptake transporter HLY11_15465 PF01206 Sulfurtransferase TusA HLY11_15480 PF00403 Heavy-metal-associated domain HLY11_15485 PF07947 YhhN family HLY11_15490 PF10694 Protein of unknown function (DUF2500) HLY11_15495 PF06611 Protein of unknown function (DUF1145) HLY11_15505 PF02881 SRP54-type protein, helical bundle domain HLY11_15505 PF00448 SRP54-type protein, GTPase domain HLY11_15510 PF00005 ABC transporter HLY11_15515 PF18075 FtsX extracellular domain HLY11_15515 PF02687 FtsX-like permease family HLY11_15520 PF04545 Sigma-70, region 4 HLY11_15520 PF04542 Sigma-70 region 2 HLY11_15525 PF13458 Periplasmic binding protein HLY11_15540 PF12568 Acetyltransferase (GNAT) domain, PanZ HLY11_15545 PF13458 Periplasmic binding protein HLY11_15550 PF02653 Branched-chain amino acid transport system / permease component HLY11_15555 PF11862 Domain of unknown function (DUF3382) HLY11_15555 PF02653 Branched-chain amino acid transport system / permease component HLY11_15560 PF12399 Branched-chain amino acid ATP-binding cassette transporter HLY11_15560 PF00005 ABC transporter HLY11_15565 PF00005 ABC transporter HLY11_15575 PF13416 Bacterial extracellular solute-binding protein HLY11_15580 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_15585 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_15590 PF00005 ABC transporter HLY11_15590 PF17912 MalK OB fold domain HLY11_15595 PF03009 Glycerophosphoryl diester phosphodiesterase family HLY11_15600 PF10956 Protein of unknown function (DUF2756) HLY11_15610 PF00583 Acetyltransferase (GNAT) family HLY11_15615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HLY11_15615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HLY11_15620 PF17954 Quercetinase C-terminal cupin domain HLY11_15620 PF02678 Pirin HLY11_15625 PF00356 Bacterial regulatory proteins, lacI family HLY11_15625 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HLY11_15630 PF01202 Shikimate kinase HLY11_15635 PF02447 GntP family permease HLY11_15640 PF00270 DEAD/DEAH box helicase HLY11_15640 PF16124 RecQ zinc-binding HLY11_15640 PF09382 RQC domain HLY11_15640 PF00570 HRDC domain HLY11_15640 PF00271 Helicase conserved C-terminal domain HLY11_15650 PF01914 MarC family integral membrane protein HLY11_15655 PF02774 Semialdehyde dehydrogenase, dimerisation domain HLY11_15655 PF01118 Semialdehyde dehydrogenase, NAD binding domain HLY11_15660 PF02806 Alpha amylase, C-terminal all-beta domain HLY11_15660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HLY11_15660 PF00128 Alpha amylase, catalytic domain HLY11_15665 PF00128 Alpha amylase, catalytic domain HLY11_15665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HLY11_15665 PF18390 Glycogen debranching enzyme C-terminal domain HLY11_15670 PF00483 Nucleotidyl transferase HLY11_15675 PF00534 Glycosyl transferases group 1 HLY11_15675 PF08323 Starch synthase catalytic domain HLY11_15680 PF00343 Carbohydrate phosphorylase HLY11_15725 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HLY11_15725 PF01266 FAD dependent oxidoreductase HLY11_15730 PF00581 Rhodanese-like domain HLY11_15735 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HLY11_15735 PF01694 Rhomboid family HLY11_15740 PF00455 DeoR C terminal sensor domain HLY11_15740 PF08220 DeoR-like helix-turn-helix domain HLY11_15745 PF06956 Regulator of RNA terminal phosphate cyclase HLY11_15745 PF00158 Sigma-54 interaction domain HLY11_15750 PF01139 tRNA-splicing ligase RtcB HLY11_15755 PF01137 RNA 3'-terminal phosphate cyclase HLY11_15755 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain HLY11_15770 PF00196 Bacterial regulatory proteins, luxR family HLY11_15770 PF17874 MalT-like TPR region HLY11_15775 PF00343 Carbohydrate phosphorylase HLY11_15780 PF02446 4-alpha-glucanotransferase HLY11_15785 PF02447 GntP family permease HLY11_15790 PF01521 Iron-sulphur cluster biosynthesis HLY11_15790 PF01106 NifU-like domain HLY11_15795 PF00156 Phosphoribosyl transferase domain HLY11_15800 PF00561 alpha/beta hydrolase fold HLY11_15810 PF09012 FeoC like transcriptional regulator HLY11_15815 PF17910 FeoB cytosolic helical domain HLY11_15815 PF07664 Ferrous iron transport protein B C terminus HLY11_15815 PF07670 Nucleoside recognition HLY11_15815 PF02421 Ferrous iron transport protein B HLY11_15820 PF04023 FeoA domain HLY11_15825 PF09371 Tex-like protein N-terminal domain HLY11_15825 PF17674 HHH domain HLY11_15825 PF16921 Tex protein YqgF-like domain HLY11_15825 PF00575 S1 RNA binding domain HLY11_15830 PF03449 Transcription elongation factor, N-terminal HLY11_15830 PF01272 Transcription elongation factor, GreA/GreB, C-term HLY11_15835 PF00486 Transcriptional regulatory protein, C terminal HLY11_15835 PF00072 Response regulator receiver domain HLY11_15840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_15840 PF00672 HAMP domain HLY11_15840 PF00512 His Kinase A (phospho-acceptor) domain HLY11_15855 PF01293 Phosphoenolpyruvate carboxykinase HLY11_15860 PF13687 Domain of unknown function (DUF4153) HLY11_15865 PF01430 Hsp33 protein HLY11_15870 PF01479 S4 domain HLY11_15875 PF13419 Haloacid dehalogenase-like hydrolase HLY11_15880 PF07095 Intracellular growth attenuator protein IgaA HLY11_15885 PF00293 NUDIX domain HLY11_15890 PF17092 Penicillin-binding protein OB-like domain HLY11_15890 PF00912 Transglycosylase HLY11_15890 PF00905 Penicillin binding protein transpeptidase domain HLY11_15900 PF05137 Fimbrial assembly protein (PilN) HLY11_15910 PF10748 DNA utilization proteins HofP HLY11_15915 PF00263 Bacterial type II and III secretion system protein HLY11_15915 PF03958 Bacterial type II/III secretion system short domain HLY11_15920 PF01202 Shikimate kinase HLY11_15925 PF01761 3-dehydroquinate synthase HLY11_15930 PF05036 Sporulation related domain HLY11_15935 PF02086 D12 class N6 adenine-specific DNA methyltransferase HLY11_15940 PF00834 Ribulose-phosphate 3 epimerase family HLY11_15945 PF13419 Haloacid dehalogenase-like hydrolase HLY11_15950 PF00579 tRNA synthetases class I (W and Y) HLY11_15955 PF14502 Helix-turn-helix domain HLY11_15955 PF14503 YhfZ C-terminal domain HLY11_15965 PF01168 Alanine racemase, N-terminal domain HLY11_15970 PF01676 Metalloenzyme superfamily HLY11_15975 PF02126 Phosphotriesterase family HLY11_15980 PF10941 Protein of unknown function DUF2620 HLY11_15985 PF10797 Protein of unknown function HLY11_15990 PF00155 Aminotransferase class I and II HLY11_15995 PF07702 UTRA domain HLY11_15995 PF00392 Bacterial regulatory proteins, gntR family HLY11_16000 PF00294 pfkB family carbohydrate kinase HLY11_16005 PF01261 Xylose isomerase-like TIM barrel HLY11_16010 PF01380 SIS domain HLY11_16015 PF13520 Amino acid permease HLY11_16020 PF13978 Protein of unknown function (DUF4223) HLY11_16025 PF10414 Sirohaem synthase dimerisation region HLY11_16025 PF14824 Sirohaem biosynthesis protein central HLY11_16025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HLY11_16030 PF01226 Formate/nitrite transporter HLY11_16035 PF13806 Rieske-like [2Fe-2S] domain HLY11_16040 PF18267 Rubredoxin NAD+ reductase C-terminal domain HLY11_16040 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_16040 PF04324 BFD-like [2Fe-2S] binding domain HLY11_16040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HLY11_16040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HLY11_16045 PF07690 Major Facilitator Superfamily HLY11_16050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HLY11_16055 PF10832 Protein of unknown function (DUF2559) HLY11_16060 PF02661 Fic/DOC family HLY11_16065 PF00117 Glutamine amidotransferase class-I HLY11_16070 PF00202 Aminotransferase class-III HLY11_16075 PF12805 FUSC-like inner membrane protein yccS HLY11_16080 PF13545 Crp-like helix-turn-helix domain HLY11_16080 PF00027 Cyclic nucleotide-binding domain HLY11_16085 PF02566 OsmC-like protein HLY11_16090 PF00485 Phosphoribulokinase / Uridine kinase family HLY11_16095 PF06794 Uncharacterised protein family (UPF0270) HLY11_16100 PF00561 alpha/beta hydrolase fold HLY11_16105 PF00005 ABC transporter HLY11_16105 PF12848 ABC transporter HLY11_16110 PF02525 Flavodoxin-like fold HLY11_16115 PF00999 Sodium/hydrogen exchanger family HLY11_16115 PF02254 TrkA-N domain HLY11_16120 PF09526 Probable metal-binding protein (DUF2387) HLY11_16125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HLY11_16130 PF04102 SlyX HLY11_16135 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HLY11_16135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HLY11_16140 PF13309 HTH domain HLY11_16140 PF08348 YheO-like PAS domain HLY11_16145 PF02635 DsrE/DsrF-like family HLY11_16150 PF02635 DsrE/DsrF-like family HLY11_16155 PF04077 DsrH like protein HLY11_16160 PF00164 Ribosomal protein S12/S23 HLY11_16165 PF00177 Ribosomal protein S7p/S5e HLY11_16170 PF00679 Elongation factor G C-terminus HLY11_16170 PF14492 Elongation Factor G, domain II HLY11_16170 PF03764 Elongation factor G, domain IV HLY11_16170 PF00009 Elongation factor Tu GTP binding domain HLY11_16170 PF03144 Elongation factor Tu domain 2 HLY11_16175 PF03144 Elongation factor Tu domain 2 HLY11_16175 PF03143 Elongation factor Tu C-terminal domain HLY11_16175 PF00009 Elongation factor Tu GTP binding domain HLY11_16180 PF02839 Carbohydrate binding domain HLY11_16185 PF04324 BFD-like [2Fe-2S] binding domain HLY11_16190 PF00210 Ferritin-like domain HLY11_16195 PF01478 Type IV leader peptidase family HLY11_16200 PF04612 Type II secretion system (T2SS), protein M HLY11_16205 PF12693 GspL periplasmic domain HLY11_16205 PF05134 Type II secretion system (T2SS), protein L HLY11_16210 PF03934 Type II secretion system (T2SS), protein K HLY11_16215 PF11612 Type II secretion system (T2SS), protein J HLY11_16215 PF07963 Prokaryotic N-terminal methylation motif HLY11_16220 PF02501 Type II secretion system (T2SS), protein I HLY11_16220 PF07963 Prokaryotic N-terminal methylation motif HLY11_16225 PF12019 Type II transport protein GspH HLY11_16225 PF07963 Prokaryotic N-terminal methylation motif HLY11_16230 PF08334 Type II secretion system (T2SS), protein G HLY11_16230 PF07963 Prokaryotic N-terminal methylation motif HLY11_16235 PF00482 Type II secretion system (T2SS), protein F HLY11_16240 PF00437 Type II/IV secretion system protein HLY11_16245 PF00263 Bacterial type II and III secretion system protein HLY11_16245 PF03958 Bacterial type II/III secretion system short domain HLY11_16250 PF11356 Type II secretion system protein C HLY11_16255 PF01471 Putative peptidoglycan binding domain HLY11_16255 PF13401 AAA domain HLY11_16265 PF00338 Ribosomal protein S10p/S20e HLY11_16270 PF00297 Ribosomal protein L3 HLY11_16275 PF00573 Ribosomal protein L4/L1 family HLY11_16280 PF00276 Ribosomal protein L23 HLY11_16285 PF00181 Ribosomal Proteins L2, RNA binding domain HLY11_16285 PF03947 Ribosomal Proteins L2, C-terminal domain HLY11_16290 PF00203 Ribosomal protein S19 HLY11_16295 PF00237 Ribosomal protein L22p/L17e HLY11_16300 PF00189 Ribosomal protein S3, C-terminal domain HLY11_16300 PF07650 KH domain HLY11_16305 PF00252 Ribosomal protein L16p/L10e HLY11_16310 PF00831 Ribosomal L29 protein HLY11_16315 PF00366 Ribosomal protein S17 HLY11_16320 PF00238 Ribosomal protein L14p/L23e HLY11_16325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HLY11_16325 PF00467 KOW motif HLY11_16330 PF00673 ribosomal L5P family C-terminus HLY11_16330 PF00281 Ribosomal protein L5 HLY11_16335 PF00253 Ribosomal protein S14p/S29e HLY11_16340 PF00410 Ribosomal protein S8 HLY11_16345 PF00347 Ribosomal protein L6 HLY11_16350 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HLY11_16355 PF03719 Ribosomal protein S5, C-terminal domain HLY11_16355 PF00333 Ribosomal protein S5, N-terminal domain HLY11_16360 PF00327 Ribosomal protein L30p/L7e HLY11_16365 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HLY11_16370 PF00344 SecY translocase HLY11_16375 PF00444 Ribosomal protein L36 HLY11_16380 PF00416 Ribosomal protein S13/S18 HLY11_16385 PF00411 Ribosomal protein S11 HLY11_16390 PF01479 S4 domain HLY11_16390 PF00163 Ribosomal protein S4/S9 N-terminal domain HLY11_16395 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HLY11_16395 PF01000 RNA polymerase Rpb3/RpoA insert domain HLY11_16395 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HLY11_16400 PF01196 Ribosomal protein L17 HLY11_16405 PF09350 Domain of unknown function (DUF1992) HLY11_16410 PF13411 MerR HTH family regulatory protein HLY11_16415 PF03889 Alternative ribosome-rescue factor A HLY11_16420 PF01741 Large-conductance mechanosensitive channel, MscL HLY11_16425 PF02254 TrkA-N domain HLY11_16425 PF02080 TrkA-C domain HLY11_16430 PF01029 NusB family HLY11_16430 PF01189 16S rRNA methyltransferase RsmB/F HLY11_16435 PF02911 Formyl transferase, C-terminal domain HLY11_16435 PF00551 Formyl transferase HLY11_16440 PF01327 Polypeptide deformylase HLY11_16445 PF17782 DprA winged helix domain HLY11_16445 PF02481 DNA recombination-mediator protein A HLY11_16450 PF04361 Protein of unknown function (DUF494) HLY11_16455 PF01396 Topoisomerase DNA binding C4 zinc finger HLY11_16460 PF01300 Telomere recombination HLY11_16465 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HLY11_16465 PF08501 Shikimate dehydrogenase substrate binding domain HLY11_16465 PF01488 Shikimate / quinate 5-dehydrogenase HLY11_16470 PF07369 Protein of unknown function (DUF1488) HLY11_16475 PF00132 Bacterial transferase hexapeptide (six repeats) HLY11_16515 PF00005 ABC transporter HLY11_16520 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_16525 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_16530 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_16540 PF00873 AcrB/AcrD/AcrF family HLY11_16545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_16545 PF00529 HlyD membrane-fusion protein of T1SS HLY11_16550 PF08361 MAATS-type transcriptional repressor, C-terminal region HLY11_16550 PF00440 Bacterial regulatory proteins, tetR family HLY11_16555 PF10831 Protein of unknown function (DUF2556) HLY11_16560 PF01555 DNA methylase HLY11_16565 PF02954 Bacterial regulatory protein, Fis family HLY11_16570 PF01207 Dihydrouridine synthase (Dus) HLY11_16580 PF00474 Sodium:solute symporter family HLY11_16585 PF06196 Protein of unknown function (DUF997) HLY11_16590 PF00294 pfkB family carbohydrate kinase HLY11_16595 PF08220 DeoR-like helix-turn-helix domain HLY11_16595 PF00455 DeoR C terminal sensor domain HLY11_16600 PF01116 Fructose-bisphosphate aldolase class-II HLY11_16605 PF13407 Periplasmic binding protein domain HLY11_16610 PF00005 ABC transporter HLY11_16615 PF02653 Branched-chain amino acid transport system / permease component HLY11_16620 PF00294 pfkB family carbohydrate kinase HLY11_16630 PF02785 Biotin carboxylase C-terminal domain HLY11_16630 PF00289 Biotin carboxylase, N-terminal domain HLY11_16630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HLY11_16635 PF00364 Biotin-requiring enzyme HLY11_16645 PF00107 Zinc-binding dehydrogenase HLY11_16645 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_16650 PF17157 Gammaproteobacterial periplasmic sensor domain HLY11_16650 PF00563 EAL domain HLY11_16650 PF00990 Diguanylate cyclase, GGDEF domain HLY11_16660 PF04085 rod shape-determining protein MreC HLY11_16665 PF04093 rod shape-determining protein MreD HLY11_16670 PF02545 Maf-like protein HLY11_16675 PF10150 Ribonuclease E/G family HLY11_16675 PF00575 S1 RNA binding domain HLY11_16680 PF13116 Protein of unknown function HLY11_16680 PF13502 AsmA-like C-terminal region HLY11_16685 PF01523 Putative modulator of DNA gyrase HLY11_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_16690 PF03466 LysR substrate binding domain HLY11_16695 PF07869 Protein of unknown function (DUF1656) HLY11_16700 PF13533 Biotin-lipoyl like HLY11_16705 PF04632 Fusaric acid resistance protein family HLY11_16710 PF01337 Barstar (barnase inhibitor) HLY11_16715 PF07338 Protein of unknown function (DUF1471) HLY11_16720 PF02863 Arginine repressor, C-terminal domain HLY11_16720 PF01316 Arginine repressor, DNA binding domain HLY11_16725 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HLY11_16725 PF00056 lactate/malate dehydrogenase, NAD binding domain HLY11_16730 PF13180 PDZ domain HLY11_16735 PF00595 PDZ domain HLY11_16735 PF13180 PDZ domain HLY11_16740 PF06295 Protein of unknown function (DUF1043) HLY11_16745 PF03969 AFG1-like ATPase HLY11_16750 PF00572 Ribosomal protein L13 HLY11_16755 PF00380 Ribosomal protein S9/S16 HLY11_16760 PF00043 Glutathione S-transferase, C-terminal domain HLY11_16760 PF02798 Glutathione S-transferase, N-terminal domain HLY11_16765 PF04386 Stringent starvation protein B HLY11_16770 PF03606 C4-dicarboxylate anaerobic carrier HLY11_16775 PF00392 Bacterial regulatory proteins, gntR family HLY11_16775 PF07729 FCD domain HLY11_16780 PF00701 Dihydrodipicolinate synthetase family HLY11_16785 PF07690 Major Facilitator Superfamily HLY11_16790 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HLY11_16795 PF00480 ROK family HLY11_16800 PF04074 YhcH/YjgK/YiaL HLY11_16805 PF06250 YhcG PDDEXK nuclease domain HLY11_16805 PF17761 DUF1016 N-terminal domain HLY11_16810 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_16810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HLY11_16815 PF00310 Glutamine amidotransferases class-II HLY11_16815 PF04898 Glutamate synthase central domain HLY11_16815 PF01645 Conserved region in glutamate synthase HLY11_16815 PF01493 GXGXG motif HLY11_16820 PF04055 Radical SAM superfamily HLY11_16820 PF16199 Radical_SAM C-terminal domain HLY11_16825 PF01627 Hpt domain HLY11_16825 PF00072 Response regulator receiver domain HLY11_16825 PF00512 His Kinase A (phospho-acceptor) domain HLY11_16825 PF18415 Histidine kinase receptor ArcB trans-membrane domain HLY11_16825 PF00989 PAS fold HLY11_16825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_16835 PF00912 Transglycosylase HLY11_16840 PF10707 PhoP regulatory network protein YrbL HLY11_16845 PF00381 PTS HPr component phosphorylation site HLY11_16850 PF03668 P-loop ATPase protein family HLY11_16855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_16860 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HLY11_16865 PF04963 Sigma-54 factor, core binding domain HLY11_16865 PF04552 Sigma-54, DNA binding domain HLY11_16865 PF00309 Sigma-54 factor, Activator interacting domain (AID) HLY11_16870 PF12399 Branched-chain amino acid ATP-binding cassette transporter HLY11_16870 PF00005 ABC transporter HLY11_16875 PF03968 OstA-like protein HLY11_16880 PF06835 Lipopolysaccharide-assembly, LptC-related HLY11_16890 PF00571 CBS domain HLY11_16890 PF01380 SIS domain HLY11_16895 PF01699 Sodium/calcium exchanger protein HLY11_16900 PF00005 ABC transporter HLY11_16905 PF02405 Permease MlaE HLY11_16910 PF02470 MlaD protein HLY11_16915 PF05494 MlaC protein HLY11_16920 PF13466 STAS domain HLY11_16925 PF01722 BolA-like protein HLY11_16930 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HLY11_16935 PF13693 Winged helix-turn-helix DNA-binding HLY11_16940 PF00348 Polyprenyl synthetase HLY11_16945 PF00829 Ribosomal prokaryotic L21 protein HLY11_16950 PF01016 Ribosomal L27 protein HLY11_16955 PF00892 EamA-like transporter family HLY11_16960 PF01926 50S ribosome-binding GTPase HLY11_16960 PF01018 GTP1/OBG HLY11_16965 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HLY11_16970 PF03449 Transcription elongation factor, N-terminal HLY11_16970 PF01272 Transcription elongation factor, GreA/GreB, C-term HLY11_16975 PF01985 CRS1 / YhbY (CRM) domain HLY11_16980 PF01728 FtsJ-like methyltransferase HLY11_16985 PF01434 Peptidase family M41 HLY11_16985 PF06480 FtsH Extracellular HLY11_16985 PF17862 AAA+ lid domain HLY11_16985 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_16990 PF00809 Pterin binding enzyme HLY11_16995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HLY11_16995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HLY11_16995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HLY11_16995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HLY11_17000 PF03840 Preprotein translocase SecG subunit HLY11_17010 PF00884 Sulfatase HLY11_17015 PF00764 Arginosuccinate synthase HLY11_17025 PF17384 RimP C-terminal SH3 domain HLY11_17025 PF02576 RimP N-terminal domain HLY11_17030 PF08529 NusA N-terminal domain HLY11_17030 PF13184 NusA-like KH domain HLY11_17030 PF00575 S1 RNA binding domain HLY11_17035 PF11987 Translation-initiation factor 2 HLY11_17035 PF08364 Bacterial translation initiation factor IF-2 associated region HLY11_17035 PF00009 Elongation factor Tu GTP binding domain HLY11_17035 PF04760 Translation initiation factor IF-2, N-terminal region HLY11_17040 PF02033 Ribosome-binding factor A HLY11_17045 PF01509 TruB family pseudouridylate synthase (N terminal domain) HLY11_17045 PF09157 Pseudouridine synthase II TruB, C-terminal HLY11_17045 PF16198 tRNA pseudouridylate synthase B C-terminal domain HLY11_17050 PF00312 Ribosomal protein S15 HLY11_17055 PF00575 S1 RNA binding domain HLY11_17055 PF03725 3' exoribonuclease family, domain 2 HLY11_17055 PF01138 3' exoribonuclease family, domain 1 HLY11_17055 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HLY11_17055 PF00013 KH domain HLY11_17060 PF07719 Tetratricopeptide repeat HLY11_17060 PF13181 Tetratricopeptide repeat HLY11_17070 PF00271 Helicase conserved C-terminal domain HLY11_17070 PF12343 Cold shock protein DEAD box A HLY11_17070 PF00270 DEAD/DEAH box helicase HLY11_17070 PF03880 DbpA RNA binding domain HLY11_17075 PF03222 Tryptophan/tyrosine permease family HLY11_17080 PF00296 Luciferase-like monooxygenase HLY11_17085 PF01136 Peptidase family U32 HLY11_17090 PF01136 Peptidase family U32 HLY11_17095 PF02036 SCP-2 sterol transfer family HLY11_17100 PF13508 Acetyltransferase (GNAT) domain HLY11_17105 PF01541 GIY-YIG catalytic domain HLY11_17115 PF01965 DJ-1/PfpI family HLY11_17120 PF13460 NAD(P)H-binding HLY11_17125 PF03773 Predicted permease HLY11_17130 PF04972 BON domain HLY11_17135 PF13580 SIS domain HLY11_17140 PF02021 Uncharacterised protein family UPF0102 HLY11_17145 PF04348 LppC putative lipoprotein HLY11_17150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HLY11_17160 PF03466 LysR substrate binding domain HLY11_17160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_17165 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HLY11_17170 PF03613 PTS system mannose/fructose/sorbose family IID component HLY11_17175 PF03609 PTS system sorbose-specific iic component HLY11_17180 PF03830 PTS system sorbose subfamily IIB component HLY11_17185 PF01116 Fructose-bisphosphate aldolase class-II HLY11_17190 PF01380 SIS domain HLY11_17195 PF01979 Amidohydrolase family HLY11_17200 PF03610 PTS system fructose IIA component HLY11_17205 PF03613 PTS system mannose/fructose/sorbose family IID component HLY11_17210 PF03609 PTS system sorbose-specific iic component HLY11_17215 PF03830 PTS system sorbose subfamily IIB component HLY11_17220 PF08013 Tagatose 6 phosphate kinase HLY11_17225 PF08220 DeoR-like helix-turn-helix domain HLY11_17225 PF00455 DeoR C terminal sensor domain HLY11_17235 PF15937 prlF antitoxin for toxin YhaV_toxin HLY11_17240 PF08220 DeoR-like helix-turn-helix domain HLY11_17240 PF00455 DeoR C terminal sensor domain HLY11_17245 PF00480 ROK family HLY11_17250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HLY11_17250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HLY11_17255 PF04794 YdjC-like protein HLY11_17260 PF11975 Family 4 glycosyl hydrolase C-terminal domain HLY11_17260 PF02056 Family 4 glycosyl hydrolase HLY11_17265 PF02378 Phosphotransferase system, EIIC HLY11_17270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_17275 PF08666 SAF domain HLY11_17275 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HLY11_17280 PF07690 Major Facilitator Superfamily HLY11_17285 PF03328 HpcH/HpaI aldolase/citrate lyase family HLY11_17290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HLY11_17290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HLY11_17295 PF02595 Glycerate kinase family HLY11_17320 PF03466 LysR substrate binding domain HLY11_17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_17325 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_17330 PF03222 Tryptophan/tyrosine permease family HLY11_17335 PF00871 Acetokinase family HLY11_17340 PF01228 Glycine radical HLY11_17340 PF02901 Pyruvate formate lyase-like HLY11_17345 PF01042 Endoribonuclease L-PSP HLY11_17350 PF03313 Serine dehydratase alpha chain HLY11_17350 PF03315 Serine dehydratase beta chain HLY11_17360 PF03313 Serine dehydratase alpha chain HLY11_17370 PF02678 Pirin HLY11_17370 PF17954 Quercetinase C-terminal cupin domain HLY11_17375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_17375 PF03466 LysR substrate binding domain HLY11_17380 PF05656 Protein of unknown function (DUF805) HLY11_17385 PF13409 Glutathione S-transferase, N-terminal domain HLY11_17390 PF07681 DoxX HLY11_17395 PF13997 YqjK-like protein HLY11_17400 PF07332 Putative Actinobacterial Holin-X, holin superfamily III HLY11_17405 PF05957 Bacterial protein of unknown function (DUF883) HLY11_17410 PF06476 Protein of unknown function (DUF1090) HLY11_17415 PF13721 SecD export protein N-terminal TM region HLY11_17420 PF09335 SNARE associated Golgi protein HLY11_17425 PF07729 FCD domain HLY11_17425 PF00392 Bacterial regulatory proteins, gntR family HLY11_17435 PF04449 CS1 type fimbrial major subunit HLY11_17440 PF16967 E-set like domain HLY11_17440 PF15976 CS1-pili formation C-terminal HLY11_17440 PF17271 TcfC Usher-like barrel domain HLY11_17450 PF07690 Major Facilitator Superfamily HLY11_17455 PF02614 Glucuronate isomerase HLY11_17460 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HLY11_17460 PF08666 SAF domain HLY11_17465 PF10688 Bacterial inner membrane protein HLY11_17470 PF00375 Sodium:dicarboxylate symporter family HLY11_17475 PF03741 Integral membrane protein TerC family HLY11_17480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HLY11_17485 PF02698 DUF218 domain HLY11_17490 PF01863 Protein of unknown function DUF45 HLY11_17495 PF05175 Methyltransferase small domain HLY11_17505 PF01381 Helix-turn-helix HLY11_17510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HLY11_17510 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_17515 PF01204 Trehalase HLY11_17525 PF13520 Amino acid permease HLY11_17530 PF04074 YhcH/YjgK/YiaL HLY11_17535 PF02929 Beta galactosidase small chain HLY11_17535 PF02837 Glycosyl hydrolases family 2, sugar binding domain HLY11_17535 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HLY11_17535 PF16353 Domain of unknown function(DUF4981) HLY11_17535 PF00703 Glycosyl hydrolases family 2 HLY11_17540 PF00356 Bacterial regulatory proteins, lacI family HLY11_17545 PF01588 Putative tRNA binding domain HLY11_17550 PF00202 Aminotransferase class-III HLY11_17555 PF08447 PAS fold HLY11_17555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HLY11_17560 PF03551 Transcriptional regulator PadR-like family HLY11_17565 PF08021 Siderophore-interacting FAD-binding domain HLY11_17565 PF04954 Siderophore-interacting protein HLY11_17575 PF03167 Uracil DNA glycosylase superfamily HLY11_17580 PF04539 Sigma-70 region 3 HLY11_17580 PF00140 Sigma-70 factor, region 1.2 HLY11_17580 PF03979 Sigma-70 factor, region 1.1 HLY11_17580 PF04545 Sigma-70, region 4 HLY11_17580 PF04542 Sigma-70 region 2 HLY11_17580 PF04546 Sigma-70, non-essential region HLY11_17585 PF10410 DnaB-helicase binding domain of primase HLY11_17585 PF08278 DNA primase DnaG DnaB-binding HLY11_17585 PF08275 DNA primase catalytic core, N-terminal domain HLY11_17585 PF01807 CHC2 zinc finger HLY11_17590 PF01165 Ribosomal protein S21 HLY11_17595 PF00814 Glycoprotease family HLY11_17600 PF00939 Sodium:sulfate symporter transmembrane region HLY11_17605 PF05683 Fumarase C-terminus HLY11_17610 PF05681 Fumarate hydratase (Fumerase) HLY11_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_17615 PF03466 LysR substrate binding domain HLY11_17620 PF02660 Glycerol-3-phosphate acyltransferase HLY11_17625 PF02152 Dihydroneopterin aldolase HLY11_17630 PF02673 Bacitracin resistance protein BacA HLY11_17635 PF01743 Poly A polymerase head domain HLY11_17635 PF01966 HD domain HLY11_17635 PF12627 Probable RNA and SrmB- binding site of polymerase A HLY11_17640 PF08239 Bacterial SH3 domain HLY11_17645 PF01928 CYTH domain HLY11_17650 PF08335 GlnD PII-uridylyltransferase HLY11_17650 PF03710 Glutamate-ammonia ligase adenylyltransferase HLY11_17655 PF01467 Cytidylyltransferase-like HLY11_17655 PF00294 pfkB family carbohydrate kinase HLY11_17670 PF15975 Flotillin HLY11_17670 PF01145 SPFH domain / Band 7 family HLY11_17675 PF07290 Protein of unknown function (DUF1449) HLY11_17680 PF08971 Glycogen synthesis protein HLY11_17685 PF04380 Membrane fusogenic activity HLY11_17690 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HLY11_17700 PF02535 ZIP Zinc transporter HLY11_17705 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HLY11_17710 PF03738 Glutathionylspermidine synthase preATP-grasp HLY11_17715 PF06693 Protein of unknown function (DUF1190) HLY11_17720 PF02321 Outer membrane efflux protein HLY11_17725 PF00293 NUDIX domain HLY11_17730 PF06853 Protein of unknown function (DUF1249) HLY11_17735 PF00149 Calcineurin-like phosphoesterase HLY11_17740 PF05728 Uncharacterised protein family (UPF0227) HLY11_17745 PF00204 DNA gyrase B HLY11_17745 PF00986 DNA gyrase B subunit, carboxyl terminus HLY11_17745 PF01751 Toprim domain HLY11_17745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_17765 PF00294 pfkB family carbohydrate kinase HLY11_17790 PF03992 Antibiotic biosynthesis monooxygenase HLY11_17795 PF02525 Flavodoxin-like fold HLY11_17800 PF00512 His Kinase A (phospho-acceptor) domain HLY11_17800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_17800 PF08521 Two-component sensor kinase N-terminal HLY11_17805 PF00486 Transcriptional regulatory protein, C terminal HLY11_17805 PF00072 Response regulator receiver domain HLY11_17810 PF04076 Bacterial OB fold (BOF) protein HLY11_17815 PF06445 GyrI-like small molecule binding domain HLY11_17820 PF15723 Motility quorum-sensing regulator, toxin of MqsA HLY11_17825 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA HLY11_17830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_17835 PF00521 DNA gyrase/topoisomerase IV, subunit A HLY11_17835 PF03989 DNA gyrase C-terminal domain, beta-propeller HLY11_17840 PF01553 Acyltransferase HLY11_17845 PF00394 Multicopper oxidase HLY11_17845 PF07732 Multicopper oxidase HLY11_17845 PF07731 Multicopper oxidase HLY11_17860 PF11842 Domain of unknown function (DUF3362) HLY11_17860 PF04055 Radical SAM superfamily HLY11_17860 PF08497 Radical SAM N-terminal HLY11_17875 PF04728 Lipoprotein leucine-zipper HLY11_17880 PF12883 Protein of unknown function (DUF3828) HLY11_17885 PF00248 Aldo/keto reductase family HLY11_17890 PF00465 Iron-containing alcohol dehydrogenase HLY11_17895 PF12833 Helix-turn-helix domain HLY11_17895 PF06719 AraC-type transcriptional regulator N-terminus HLY11_17900 PF09335 SNARE associated Golgi protein HLY11_17905 PF01053 Cys/Met metabolism PLP-dependent enzyme HLY11_17910 PF01618 MotA/TolQ/ExbB proton channel family HLY11_17915 PF02472 Biopolymer transport protein ExbD/TolR HLY11_17925 PF03350 Uncharacterized protein family, UPF0114 HLY11_17930 PF00248 Aldo/keto reductase family HLY11_17935 PF01738 Dienelactone hydrolase family HLY11_17940 PF11115 Protein of unknown function (DUF2623) HLY11_17945 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HLY11_17945 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HLY11_17950 PF13247 4Fe-4S dicluster domain HLY11_17955 PF03916 Polysulphide reductase, NrfD HLY11_17960 PF00374 Nickel-dependent hydrogenase HLY11_17965 PF01750 Hydrogenase maturation protease HLY11_17970 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HLY11_17975 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HLY11_17980 PF01455 HupF/HypC family HLY11_17985 PF02798 Glutathione S-transferase, N-terminal domain HLY11_17990 PF03738 Glutathionylspermidine synthase preATP-grasp HLY11_17990 PF05257 CHAP domain HLY11_17995 PF01384 Phosphate transporter family HLY11_18015 PF01943 Polysaccharide biosynthesis protein HLY11_18025 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HLY11_18030 PF03739 Lipopolysaccharide export system permease LptF/LptG HLY11_18040 PF00155 Aminotransferase class I and II HLY11_18045 PF00550 Phosphopantetheine attachment site HLY11_18055 PF14535 AMP-binding enzyme C-terminal domain HLY11_18055 PF00501 AMP-binding enzyme HLY11_18065 PF00392 Bacterial regulatory proteins, gntR family HLY11_18065 PF07729 FCD domain HLY11_18070 PF02913 FAD linked oxidases, C-terminal domain HLY11_18070 PF01565 FAD binding domain HLY11_18075 PF01565 FAD binding domain HLY11_18080 PF13183 4Fe-4S dicluster domain HLY11_18080 PF02754 Cysteine-rich domain HLY11_18085 PF03928 Haem-degrading HLY11_18090 PF01274 Malate synthase HLY11_18095 PF02652 L-lactate permease HLY11_18125 PF04474 Protein of unknown function (DUF554) HLY11_18130 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HLY11_18130 PF01276 Orn/Lys/Arg decarboxylase, major domain HLY11_18130 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HLY11_18135 PF03825 Nucleoside H+ symporter HLY11_18140 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HLY11_18140 PF01464 Transglycosylase SLT domain HLY11_18145 PF04362 Bacterial Fe(2+) trafficking HLY11_18150 PF00730 HhH-GPD superfamily base excision DNA repair protein HLY11_18150 PF10576 Iron-sulfur binding domain of endonuclease III HLY11_18150 PF00633 Helix-hairpin-helix motif HLY11_18150 PF14815 NUDIX domain HLY11_18155 PF02390 Putative methyltransferase HLY11_18160 PF04320 Protein with unknown function (DUF469) HLY11_18165 PF11101 Protein of unknown function (DUF2884) HLY11_18170 PF17763 Glutaminase/Asparaginase C-terminal domain HLY11_18170 PF00710 Asparaginase, N-terminal HLY11_18175 PF06717 Protein of unknown function (DUF1202) HLY11_18180 PF04055 Radical SAM superfamily HLY11_18180 PF06969 HemN C-terminal domain HLY11_18185 PF01725 Ham1 family HLY11_18190 PF02594 Uncharacterised ACR, YggU family COG1872 HLY11_18195 PF02325 YGGT family HLY11_18200 PF01168 Alanine racemase, N-terminal domain HLY11_18205 PF00437 Type II/IV secretion system protein HLY11_18210 PF03652 Holliday junction resolvase HLY11_18215 PF02622 Uncharacterized ACR, COG1678 HLY11_18220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HLY11_18220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HLY11_18225 PF04452 RNA methyltransferase HLY11_18230 PF04231 Endonuclease I HLY11_18235 PF10263 SprT-like family HLY11_18235 PF17283 SprT-like zinc ribbon domain HLY11_18240 PF00083 Sugar (and other) transporter HLY11_18245 PF00438 S-adenosylmethionine synthetase, N-terminal domain HLY11_18245 PF02773 S-adenosylmethionine synthetase, C-terminal domain HLY11_18245 PF02772 S-adenosylmethionine synthetase, central domain HLY11_18250 PF17430 Uncharacterized YqgC-like HLY11_18255 PF11036 Virulence promoting factor HLY11_18260 PF17810 Arginine decarboxylase helical bundle domain HLY11_18260 PF17944 Arginine decarboxylase C-terminal helical extension HLY11_18260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HLY11_18270 PF00491 Arginase family HLY11_18280 PF01435 Peptidase family M48 HLY11_18285 PF02779 Transketolase, pyrimidine binding domain HLY11_18285 PF02780 Transketolase, C-terminal domain HLY11_18285 PF00456 Transketolase, thiamine diphosphate binding domain HLY11_18290 PF01145 SPFH domain / Band 7 family HLY11_18295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_18300 PF02378 Phosphotransferase system, EIIC HLY11_18300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_18305 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_18305 PF00107 Zinc-binding dehydrogenase HLY11_18310 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HLY11_18315 PF05068 Mannitol repressor HLY11_18325 PF00005 ABC transporter HLY11_18330 PF00005 ABC transporter HLY11_18350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HLY11_18350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HLY11_18355 PF00162 Phosphoglycerate kinase HLY11_18360 PF01116 Fructose-bisphosphate aldolase class-II HLY11_18365 PF00924 Mechanosensitive ion channel HLY11_18365 PF05552 Conserved TM helix HLY11_18370 PF01810 LysE type translocator HLY11_18375 PF04402 Protein of unknown function (DUF541) HLY11_18380 PF03466 LysR substrate binding domain HLY11_18380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_18385 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HLY11_18385 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HLY11_18390 PF00378 Enoyl-CoA hydratase/isomerase HLY11_18400 PF02310 B12 binding domain HLY11_18400 PF01642 Methylmalonyl-CoA mutase HLY11_18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_18405 PF03466 LysR substrate binding domain HLY11_18410 PF00970 Oxidoreductase FAD-binding domain HLY11_18410 PF00111 2Fe-2S iron-sulfur cluster binding domain HLY11_18410 PF00175 Oxidoreductase NAD-binding domain HLY11_18415 PF07338 Protein of unknown function (DUF1471) HLY11_18420 PF02525 Flavodoxin-like fold HLY11_18425 PF03466 LysR substrate binding domain HLY11_18430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HLY11_18435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HLY11_18435 PF01842 ACT domain HLY11_18435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HLY11_18450 PF01812 5-formyltetrahydrofolate cyclo-ligase family HLY11_18460 PF05164 Cell division protein ZapA HLY11_18465 PF03695 Uncharacterised protein family (UPF0149) HLY11_18470 PF00557 Metallopeptidase family M24 HLY11_18470 PF05195 Aminopeptidase P, N-terminal domain HLY11_18475 PF01494 FAD binding domain HLY11_18480 PF01494 FAD binding domain HLY11_18490 PF08669 Glycine cleavage T-protein C-terminal barrel domain HLY11_18490 PF01571 Aminomethyltransferase folate-binding domain HLY11_18495 PF01597 Glycine cleavage H-protein HLY11_18500 PF02347 Glycine cleavage system P-protein HLY11_18505 PF00232 Glycosyl hydrolase family 1 HLY11_18515 PF03006 Haemolysin-III related HLY11_18520 PF01571 Aminomethyltransferase folate-binding domain HLY11_18525 PF03937 Flavinator of succinate dehydrogenase HLY11_18530 PF07254 Membrane-bound toxin component of toxin-antitoxin system HLY11_18535 PF00258 Flavodoxin HLY11_18540 PF00589 Phage integrase family HLY11_18540 PF02899 Phage integrase, N-terminal SAM-like domain HLY11_18545 PF13098 Thioredoxin-like domain HLY11_18545 PF10411 Disulfide bond isomerase protein N-terminus HLY11_18550 PF02272 DHHA1 domain HLY11_18550 PF17768 RecJ OB domain HLY11_18550 PF01368 DHH family HLY11_18560 PF01336 OB-fold nucleic acid binding domain HLY11_18560 PF00152 tRNA synthetases class II (D, K and N) HLY11_18565 PF00293 NUDIX domain HLY11_18580 PF00860 Permease family HLY11_18590 PF13247 4Fe-4S dicluster domain HLY11_18595 PF00860 Permease family HLY11_18600 PF01979 Amidohydrolase family HLY11_18605 PF00860 Permease family HLY11_18610 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HLY11_18610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HLY11_18610 PF01799 [2Fe-2S] binding domain HLY11_18615 PF00941 FAD binding domain in molybdopterin dehydrogenase HLY11_18620 PF01979 Amidohydrolase family HLY11_18625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HLY11_18625 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_18630 PF12804 MobA-like NTP transferase domain HLY11_18640 PF02625 XdhC and CoxI family HLY11_18640 PF13478 XdhC Rossmann domain HLY11_18645 PF00696 Amino acid kinase family HLY11_18650 PF01979 Amidohydrolase family HLY11_18655 PF01546 Peptidase family M20/M25/M40 HLY11_18655 PF07687 Peptidase dimerisation domain HLY11_18660 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_18665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HLY11_18665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HLY11_18675 PF01799 [2Fe-2S] binding domain HLY11_18675 PF00111 2Fe-2S iron-sulfur cluster binding domain HLY11_18680 PF03450 CO dehydrogenase flavoprotein C-terminal domain HLY11_18680 PF00941 FAD binding domain in molybdopterin dehydrogenase HLY11_18685 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HLY11_18685 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HLY11_18690 PF01476 LysM domain HLY11_18690 PF01551 Peptidase family M23 HLY11_18710 PF12833 Helix-turn-helix domain HLY11_18715 PF00263 Bacterial type II and III secretion system protein HLY11_18715 PF03958 Bacterial type II/III secretion system short domain HLY11_18720 PF07201 HrpJ-like domain HLY11_18725 PF00771 FHIPEP family HLY11_18730 PF18269 T3SS EscN ATPase C-terminal domain HLY11_18730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HLY11_18730 PF02874 ATP synthase alpha/beta family, beta-barrel domain HLY11_18745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HLY11_18750 PF00813 FliP family HLY11_18755 PF01313 Bacterial export proteins, family 3 HLY11_18760 PF01311 Bacterial export proteins, family 1 HLY11_18765 PF01312 FlhB HrpN YscU SpaS Family HLY11_18780 PF09480 Type III secretion system protein PrgH-EprH (PrgH) HLY11_18785 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HLY11_18795 PF01514 Secretory protein of YscJ/FliF family HLY11_18800 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) HLY11_18815 PF00072 Response regulator receiver domain HLY11_18815 PF00196 Bacterial regulatory proteins, luxR family HLY11_18820 PF01464 Transglycosylase SLT domain HLY11_18830 PF00486 Transcriptional regulatory protein, C terminal HLY11_18835 PF07720 Tetratricopeptide repeat HLY11_18860 PF00486 Transcriptional regulatory protein, C terminal HLY11_18865 PF00196 Bacterial regulatory proteins, luxR family HLY11_18870 PF03222 Tryptophan/tyrosine permease family HLY11_18875 PF00108 Thiolase, N-terminal domain HLY11_18875 PF02803 Thiolase, C-terminal domain HLY11_18880 PF04962 KduI/IolB family HLY11_18890 PF00083 Sugar (and other) transporter HLY11_18895 PF01177 Asp/Glu/Hydantoin racemase HLY11_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_18900 PF03466 LysR substrate binding domain HLY11_18905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HLY11_18905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HLY11_18910 PF00356 Bacterial regulatory proteins, lacI family HLY11_18915 PF00501 AMP-binding enzyme HLY11_18915 PF01553 Acyltransferase HLY11_18920 PF07690 Major Facilitator Superfamily HLY11_18925 PF00248 Aldo/keto reductase family HLY11_18930 PF06004 Bacterial protein of unknown function (DUF903) HLY11_18935 PF03741 Integral membrane protein TerC family HLY11_18940 PF02976 DNA mismatch repair enzyme MutH HLY11_18945 PF00293 NUDIX domain HLY11_18950 PF01590 GAF domain HLY11_18950 PF05524 PEP-utilising enzyme, N-terminal HLY11_18950 PF00391 PEP-utilising enzyme, mobile domain HLY11_18950 PF02896 PEP-utilising enzyme, TIM barrel domain HLY11_18955 PF01790 Prolipoprotein diacylglyceryl transferase HLY11_18960 PF00303 Thymidylate synthase HLY11_18965 PF07963 Prokaryotic N-terminal methylation motif HLY11_18970 PF07963 Prokaryotic N-terminal methylation motif HLY11_18975 PF10713 Protein of unknown function (DUF2509) HLY11_18980 PF07963 Prokaryotic N-terminal methylation motif HLY11_18980 PF12528 Type II secretion prepilin peptidase dependent protein C HLY11_18985 PF17946 RecC C-terminal domain HLY11_18990 PF05193 Peptidase M16 inactive domain HLY11_18990 PF16187 Middle or third domain of peptidase_M16 HLY11_18990 PF00675 Insulinase (Peptidase family M16) HLY11_18995 PF12705 PD-(D/E)XK nuclease superfamily HLY11_18995 PF00580 UvrD/REP helicase N-terminal domain HLY11_18995 PF13361 UvrD-like helicase C-terminal domain HLY11_19000 PF13538 UvrD-like helicase C-terminal domain HLY11_19005 PF00583 Acetyltransferase (GNAT) family HLY11_19005 PF00696 Amino acid kinase family HLY11_19010 PF01520 N-acetylmuramoyl-L-alanine amidase HLY11_19010 PF11741 AMIN domain HLY11_19015 PF03123 CAT RNA binding domain HLY11_19015 PF00874 PRD domain HLY11_19020 PF02378 Phosphotransferase system, EIIC HLY11_19020 PF00367 phosphotransferase system, EIIB HLY11_19025 PF00155 Aminotransferase class I and II HLY11_19030 PF01380 SIS domain HLY11_19030 PF00571 CBS domain HLY11_19035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HLY11_19035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HLY11_19035 PF01842 ACT domain HLY11_19045 PF03562 MltA specific insert domain HLY11_19045 PF06725 3D domain HLY11_19050 PF00899 ThiF family HLY11_19055 PF02657 Fe-S metabolism associated domain HLY11_19060 PF00266 Aminotransferase class-V HLY11_19065 PF06004 Bacterial protein of unknown function (DUF903) HLY11_19070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_19070 PF03466 LysR substrate binding domain HLY11_19075 PF04241 Protein of unknown function (DUF423) HLY11_19080 PF18125 RlmM ferredoxin-like domain HLY11_19080 PF01728 FtsJ-like methyltransferase HLY11_19085 PF08220 DeoR-like helix-turn-helix domain HLY11_19085 PF00455 DeoR C terminal sensor domain HLY11_19090 PF05025 RbsD / FucU transport protein family HLY11_19095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_19095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_19100 PF07881 L-fucose isomerase, first N-terminal domain HLY11_19100 PF02952 L-fucose isomerase, C-terminal domain HLY11_19100 PF07882 L-fucose isomerase, second N-terminal domain HLY11_19105 PF07690 Major Facilitator Superfamily HLY11_19110 PF00596 Class II Aldolase and Adducin N-terminal domain HLY11_19115 PF00465 Iron-containing alcohol dehydrogenase HLY11_19120 PF01367 5'-3' exonuclease, C-terminal SAM fold HLY11_19120 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HLY11_19125 PF03313 Serine dehydratase alpha chain HLY11_19125 PF03315 Serine dehydratase beta chain HLY11_19135 PF03641 Possible lysine decarboxylase HLY11_19135 PF11892 Domain of unknown function (DUF3412) HLY11_19135 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HLY11_19140 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HLY11_19140 PF14489 QueF-like protein HLY11_19145 PF07348 Syd protein (SUKH-2) HLY11_19150 PF04287 tRNA pseudouridine synthase C HLY11_19155 PF00849 RNA pseudouridylate synthase HLY11_19160 PF00258 Flavodoxin HLY11_19165 PF07690 Major Facilitator Superfamily HLY11_19170 PF13378 Enolase C-terminal domain-like HLY11_19170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HLY11_19175 PF13378 Enolase C-terminal domain-like HLY11_19180 PF00072 Response regulator receiver domain HLY11_19180 PF01627 Hpt domain HLY11_19180 PF00512 His Kinase A (phospho-acceptor) domain HLY11_19180 PF00672 HAMP domain HLY11_19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_19180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HLY11_19185 PF05958 tRNA (Uracil-5-)-methyltransferase HLY11_19185 PF01938 TRAM domain HLY11_19190 PF04607 Region found in RelA / SpoT proteins HLY11_19190 PF02824 TGS domain HLY11_19190 PF13291 ACT domain HLY11_19195 PF03819 MazG nucleotide pyrophosphohydrolase domain HLY11_19200 PF06418 CTP synthase N-terminus HLY11_19200 PF00117 Glutamine amidotransferase class-I HLY11_19205 PF00113 Enolase, C-terminal TIM barrel domain HLY11_19205 PF03952 Enolase, N-terminal domain HLY11_19210 PF04536 TPM domain HLY11_19220 PF04055 Radical SAM superfamily HLY11_19230 PF01242 6-pyruvoyl tetrahydropterin synthase HLY11_19235 PF00667 FAD binding domain HLY11_19235 PF00175 Oxidoreductase NAD-binding domain HLY11_19235 PF00258 Flavodoxin HLY11_19240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HLY11_19240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HLY11_19245 PF01507 Phosphoadenosine phosphosulfate reductase family HLY11_19250 PF01848 Hok/gef family HLY11_19260 PF04389 Peptidase family M28 HLY11_19265 PF01507 Phosphoadenosine phosphosulfate reductase family HLY11_19270 PF00009 Elongation factor Tu GTP binding domain HLY11_19280 PF12084 Protein of unknown function (DUF3561) HLY11_19285 PF04977 Septum formation initiator HLY11_19290 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HLY11_19295 PF02542 YgbB family HLY11_19300 PF01142 tRNA pseudouridine synthase D (TruD) HLY11_19305 PF01975 Survival protein SurE HLY11_19315 PF01476 LysM domain HLY11_19315 PF01551 Peptidase family M23 HLY11_19320 PF00140 Sigma-70 factor, region 1.2 HLY11_19320 PF04542 Sigma-70 region 2 HLY11_19320 PF04539 Sigma-70 region 3 HLY11_19320 PF04545 Sigma-70, region 4 HLY11_19325 PF01047 MarR family HLY11_19330 PF02441 Flavoprotein HLY11_19335 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HLY11_19345 PF00149 Calcineurin-like phosphoesterase HLY11_19350 PF01624 MutS domain I HLY11_19350 PF05188 MutS domain II HLY11_19350 PF05192 MutS domain III HLY11_19350 PF05190 MutS family domain IV HLY11_19350 PF00488 MutS domain V HLY11_19360 PF11756 Nitrous oxide-stimulated promoter HLY11_19365 PF00158 Sigma-54 interaction domain HLY11_19365 PF01590 GAF domain HLY11_19370 PF02769 AIR synthase related protein, C-terminal domain HLY11_19370 PF00586 AIR synthase related protein, N-terminal domain HLY11_19375 PF01924 Hydrogenase formation hypA family HLY11_19380 PF01455 HupF/HypC family HLY11_19385 PF02492 CobW/HypB/UreG, nucleotide-binding domain HLY11_19390 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HLY11_19395 PF11046 Transcriptional repressor of hyc and hyp operons HLY11_19400 PF13247 4Fe-4S dicluster domain HLY11_19405 PF00361 Proton-conducting membrane transporter HLY11_19410 PF00146 NADH dehydrogenase HLY11_19415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HLY11_19415 PF00374 Nickel-dependent hydrogenase HLY11_19415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HLY11_19420 PF12838 4Fe-4S dicluster domain HLY11_19425 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HLY11_19430 PF07450 Formate hydrogenlyase maturation protein HycH HLY11_19435 PF01750 Hydrogenase maturation protease HLY11_19440 PF00232 Glycosyl hydrolase family 1 HLY11_19445 PF02378 Phosphotransferase system, EIIC HLY11_19445 PF00367 phosphotransferase system, EIIB HLY11_19450 PF00356 Bacterial regulatory proteins, lacI family HLY11_19455 PF12800 4Fe-4S binding domain HLY11_19455 PF13247 4Fe-4S dicluster domain HLY11_19460 PF17788 HypF Kae1-like domain HLY11_19460 PF00708 Acylphosphatase HLY11_19460 PF01300 Telomere recombination HLY11_19460 PF07503 HypF finger HLY11_19465 PF18113 Rubredoxin binding C-terminal domain HLY11_19465 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_19470 PF00753 Metallo-beta-lactamase superfamily HLY11_19470 PF00258 Flavodoxin HLY11_19470 PF00301 Rubredoxin HLY11_19475 PF00158 Sigma-54 interaction domain HLY11_19475 PF01590 GAF domain HLY11_19480 PF01380 SIS domain HLY11_19480 PF00571 CBS domain HLY11_19485 PF08220 DeoR-like helix-turn-helix domain HLY11_19485 PF00455 DeoR C terminal sensor domain HLY11_19490 PF06923 Glucitol operon activator protein (GutM) HLY11_19495 PF00106 short chain dehydrogenase HLY11_19500 PF03829 PTS system glucitol/sorbitol-specific IIA component HLY11_19505 PF07663 Sorbitol phosphotransferase enzyme II C-terminus HLY11_19505 PF03612 Sorbitol phosphotransferase enzyme II N-terminus HLY11_19510 PF03608 PTS system enzyme II sorbitol-specific factor HLY11_19515 PF13406 Transglycosylase SLT domain HLY11_19525 PF02464 Competence-damaged protein HLY11_19530 PF00154 recA bacterial DNA recombination protein HLY11_19535 PF02631 RecX family HLY11_19540 PF01411 tRNA synthetases class II (A) HLY11_19540 PF02272 DHHA1 domain HLY11_19540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HLY11_19545 PF02599 Global regulator protein family HLY11_19575 PF13419 Haloacid dehalogenase-like hydrolase HLY11_19580 PF09335 SNARE associated Golgi protein HLY11_19585 PF04262 Glutamate-cysteine ligase HLY11_19590 PF02664 S-Ribosylhomocysteinase (LuxS) HLY11_19605 PF07690 Major Facilitator Superfamily HLY11_19610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_19610 PF00529 HlyD membrane-fusion protein of T1SS HLY11_19615 PF01047 MarR family HLY11_19625 PF05437 Branched-chain amino acid transport protein (AzlD) HLY11_19630 PF03591 AzlC protein HLY11_19635 PF07690 Major Facilitator Superfamily HLY11_19640 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HLY11_19645 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_19650 PF00005 ABC transporter HLY11_19650 PF00571 CBS domain HLY11_19655 PF00268 Ribonucleotide reductase, small chain HLY11_19660 PF00317 Ribonucleotide reductase, all-alpha domain HLY11_19660 PF02867 Ribonucleotide reductase, barrel domain HLY11_19660 PF08343 Ribonucleotide reductase N-terminal HLY11_19665 PF07972 NrdI Flavodoxin like HLY11_19670 PF00462 Glutaredoxin HLY11_19675 PF05957 Bacterial protein of unknown function (DUF883) HLY11_19680 PF09400 Protein of unknown function (DUF2002) HLY11_19685 PF06610 L-alanine exporter HLY11_19690 PF00816 H-NS histone family HLY11_19695 PF11127 Protein of unknown function (DUF2892) HLY11_19695 PF00581 Rhodanese-like domain HLY11_19700 PF01022 Bacterial regulatory protein, arsR family HLY11_19705 PF01679 Proteolipid membrane potential modulator HLY11_19710 PF01476 LysM domain HLY11_19710 PF04972 BON domain HLY11_19715 PF00392 Bacterial regulatory proteins, gntR family HLY11_19715 PF07729 FCD domain HLY11_19720 PF00324 Amino acid permease HLY11_19725 PF00202 Aminotransferase class-III HLY11_19730 PF00171 Aldehyde dehydrogenase family HLY11_19735 PF01266 FAD dependent oxidoreductase HLY11_19740 PF08943 CsiD HLY11_19745 PF00128 Alpha amylase, catalytic domain HLY11_19755 PF17621 Family of unknown function (DUF5508) HLY11_19770 PF03797 Autotransporter beta-domain HLY11_19770 PF03212 Pertactin HLY11_19770 PF16168 Adhesin of bacterial autotransporter system, probable stalk HLY11_19780 PF01668 SmpB protein HLY11_19785 PF03364 Polyketide cyclase / dehydrase and lipid transport HLY11_19790 PF03658 RnfH family Ubiquitin HLY11_19795 PF04355 SmpA / OmlA family HLY11_19800 PF02463 RecF/RecN/SMC N terminal domain HLY11_19805 PF01513 ATP-NAD kinase HLY11_19810 PF01025 GrpE HLY11_19815 PF00571 CBS domain HLY11_19815 PF03471 Transporter associated domain HLY11_19815 PF01595 Cyclin M transmembrane N-terminal domain HLY11_19820 PF01578 Cytochrome C assembly protein HLY11_19825 PF00448 SRP54-type protein, GTPase domain HLY11_19825 PF02978 Signal peptide binding domain HLY11_19825 PF02881 SRP54-type protein, helical bundle domain HLY11_19830 PF00886 Ribosomal protein S16 HLY11_19835 PF05239 PRC-barrel domain HLY11_19835 PF01782 RimM N-terminal domain HLY11_19840 PF01746 tRNA (Guanine-1)-methyltransferase HLY11_19845 PF01245 Ribosomal protein L19 HLY11_19850 PF00691 OmpA family HLY11_19855 PF00990 Diguanylate cyclase, GGDEF domain HLY11_19855 PF17152 Periplasmic sensor domain HLY11_19860 PF13689 YfiR/HmsC-like HLY11_19865 PF10973 Protein of unknown function (DUF2799) HLY11_19870 PF00793 DAHP synthetase I family HLY11_19875 PF01817 Chorismate mutase type II HLY11_19875 PF02153 Prephenate dehydrogenase HLY11_19880 PF00800 Prephenate dehydratase HLY11_19880 PF01817 Chorismate mutase type II HLY11_19890 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HLY11_19895 PF13525 Outer membrane lipoprotein HLY11_19900 PF01479 S4 domain HLY11_19900 PF00849 RNA pseudouridylate synthase HLY11_19910 PF00004 ATPase family associated with various cellular activities (AAA) HLY11_19910 PF07724 AAA domain (Cdc48 subfamily) HLY11_19910 PF02861 Clp amino terminal domain, pathogenicity island component HLY11_19910 PF10431 C-terminal, D2-small domain, of ClpB protein HLY11_19910 PF17871 AAA lid domain HLY11_19935 PF00083 Sugar (and other) transporter HLY11_19940 PF10043 Predicted periplasmic lipoprotein (DUF2279) HLY11_19945 PF13091 PLD-like domain HLY11_19950 PF13607 Succinyl-CoA ligase like flavodoxin domain HLY11_19950 PF13380 CoA binding domain HLY11_19950 PF00583 Acetyltransferase (GNAT) family HLY11_19960 PF00085 Thioredoxin HLY11_19965 PF00588 SpoU rRNA Methylase family HLY11_19965 PF08032 RNA 2'-O ribose methyltransferase substrate binding HLY11_19970 PF03167 Uracil DNA glycosylase superfamily HLY11_19975 PF01228 Glycine radical HLY11_19980 PF01810 LysE type translocator HLY11_19985 PF03466 LysR substrate binding domain HLY11_19985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_19990 PF00270 DEAD/DEAH box helicase HLY11_19990 PF00271 Helicase conserved C-terminal domain HLY11_19995 PF05175 Methyltransferase small domain HLY11_20000 PF02910 Fumarate reductase flavoprotein C-term HLY11_20000 PF00890 FAD binding domain HLY11_20010 PF08281 Sigma-70, region 4 HLY11_20010 PF04542 Sigma-70 region 2 HLY11_20015 PF03873 Anti sigma-E protein RseA, C-terminal domain HLY11_20015 PF03872 Anti sigma-E protein RseA, N-terminal domain HLY11_20020 PF17188 MucB/RseB C-terminal domain HLY11_20020 PF03888 MucB/RseB N-terminal domain HLY11_20030 PF00009 Elongation factor Tu GTP binding domain HLY11_20030 PF00679 Elongation factor G C-terminus HLY11_20030 PF06421 GTP-binding protein LepA C-terminus HLY11_20030 PF03144 Elongation factor Tu domain 2 HLY11_20035 PF10502 Signal peptidase, peptidase S26 HLY11_20040 PF00035 Double-stranded RNA binding motif HLY11_20040 PF14622 Ribonuclease-III-like HLY11_20045 PF01926 50S ribosome-binding GTPase HLY11_20045 PF07650 KH domain HLY11_20050 PF11967 Recombination protein O N terminal HLY11_20050 PF02565 Recombination protein O C terminal HLY11_20055 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HLY11_20060 PF01648 4'-phosphopantetheinyl transferase superfamily HLY11_20070 PF12838 4Fe-4S dicluster domain HLY11_20075 PF01380 SIS domain HLY11_20075 PF01418 Helix-turn-helix domain, rpiR family HLY11_20085 PF14437 MafB19-like deaminase HLY11_20090 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_20090 PF01464 Transglycosylase SLT domain HLY11_20095 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HLY11_20095 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HLY11_20095 PF02769 AIR synthase related protein, C-terminal domain HLY11_20100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_20100 PF00512 His Kinase A (phospho-acceptor) domain HLY11_20105 PF13942 YfhG lipoprotein HLY11_20110 PF00158 Sigma-54 interaction domain HLY11_20110 PF00072 Response regulator receiver domain HLY11_20115 PF00543 Nitrogen regulatory protein P-II HLY11_20120 PF00970 Oxidoreductase FAD-binding domain HLY11_20120 PF00042 Globin HLY11_20120 PF00175 Oxidoreductase NAD-binding domain HLY11_20125 PF00464 Serine hydroxymethyltransferase HLY11_20130 PF00480 ROK family HLY11_20135 PF17128 Domain of unknown function (DUF5107) HLY11_20135 PF13181 Tetratricopeptide repeat HLY11_20140 PF13407 Periplasmic binding protein domain HLY11_20145 PF00005 ABC transporter HLY11_20150 PF02653 Branched-chain amino acid transport system / permease component HLY11_20155 PF00107 Zinc-binding dehydrogenase HLY11_20155 PF08240 Alcohol dehydrogenase GroES-like domain HLY11_20160 PF01263 Aldose 1-epimerase HLY11_20165 PF07681 DoxX HLY11_20170 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_20170 PF14759 Reductase C-terminal HLY11_20175 PF00106 short chain dehydrogenase HLY11_20180 PF00355 Rieske [2Fe-2S] domain HLY11_20185 PF00866 Ring hydroxylating beta subunit HLY11_20190 PF00355 Rieske [2Fe-2S] domain HLY11_20190 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HLY11_20195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_20195 PF03466 LysR substrate binding domain HLY11_20200 PF12832 MFS_1 like family HLY11_20205 PF00874 PRD domain HLY11_20210 PF12146 Serine aminopeptidase, S33 HLY11_20215 PF00459 Inositol monophosphatase family HLY11_20220 PF00588 SpoU rRNA Methylase family HLY11_20225 PF02082 Transcriptional regulator HLY11_20230 PF00266 Aminotransferase class-V HLY11_20235 PF01592 NifU-like N terminal domain HLY11_20240 PF01521 Iron-sulphur cluster biosynthesis HLY11_20245 PF07743 HSCB C-terminal oligomerisation domain HLY11_20250 PF00012 Hsp70 protein HLY11_20255 PF00111 2Fe-2S iron-sulfur cluster binding domain HLY11_20260 PF04384 Iron-sulphur cluster assembly HLY11_20265 PF12404 Peptidase HLY11_20265 PF00883 Cytosol aminopeptidase family, catalytic domain HLY11_20270 PF07179 SseB protein N-terminal domain HLY11_20270 PF14581 SseB protein C-terminal domain HLY11_20285 PF00581 Rhodanese-like domain HLY11_20290 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HLY11_20290 PF00207 Alpha-2-macroglobulin family HLY11_20290 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HLY11_20290 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HLY11_20290 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HLY11_20290 PF17962 Bacterial macroglobulin domain 6 HLY11_20290 PF07678 A-macroglobulin TED domain HLY11_20290 PF01835 MG2 domain HLY11_20290 PF07703 Alpha-2-macroglobulin bait region domain HLY11_20295 PF06832 Penicillin-Binding Protein C-terminus Family HLY11_20295 PF00912 Transglycosylase HLY11_20295 PF00905 Penicillin binding protein transpeptidase domain HLY11_20300 PF00334 Nucleoside diphosphate kinase HLY11_20305 PF04055 Radical SAM superfamily HLY11_20310 PF13464 Domain of unknown function (DUF4115) HLY11_20315 PF04551 GcpE protein HLY11_20320 PF13393 Histidyl-tRNA synthetase HLY11_20320 PF03129 Anticodon binding domain HLY11_20325 PF09976 Tetratricopeptide repeat-like domain HLY11_20330 PF13360 PQQ-like domain HLY11_20335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HLY11_20335 PF01926 50S ribosome-binding GTPase HLY11_20340 PF07191 zinc-ribbons HLY11_20345 PF11924 Inverse autotransporter, beta-domain HLY11_20345 PF02369 Bacterial Ig-like domain (group 1) HLY11_20345 PF07979 Intimin C-type lectin domain HLY11_20345 PF09134 Invasin, domain 3 HLY11_20360 PF13742 OB-fold nucleic acid binding domain HLY11_20360 PF02601 Exonuclease VII, large subunit HLY11_20365 PF00478 IMP dehydrogenase / GMP reductase domain HLY11_20365 PF00571 CBS domain HLY11_20370 PF02540 NAD synthase HLY11_20370 PF00958 GMP synthase C terminal domain HLY11_20370 PF00117 Glutamine amidotransferase class-I HLY11_20375 PF17358 Family of unknown function (DUF5384) HLY11_20380 PF05433 Glycine zipper 2TM domain HLY11_20385 PF11119 Protein of unknown function (DUF2633) HLY11_20395 PF05231 MASE1 HLY11_20395 PF00563 EAL domain HLY11_20400 PF02541 Ppx/GppA phosphatase family HLY11_20405 PF17941 Polyphosphate kinase C-terminal domain 1 HLY11_20405 PF13090 Polyphosphate kinase C-terminal domain 2 HLY11_20405 PF13089 Polyphosphate kinase N-terminal domain HLY11_20405 PF02503 Polyphosphate kinase middle domain HLY11_20410 PF00551 Formyl transferase HLY11_20415 PF00586 AIR synthase related protein, N-terminal domain HLY11_20415 PF02769 AIR synthase related protein, C-terminal domain HLY11_20425 PF00860 Permease family HLY11_20430 PF00308 Bacterial dnaA protein HLY11_20435 PF03960 ArsC family HLY11_20440 PF01435 Peptidase family M48 HLY11_20445 PF01594 AI-2E family transporter HLY11_20450 PF01226 Formate/nitrite transporter HLY11_20455 PF00158 Sigma-54 interaction domain HLY11_20455 PF01590 GAF domain HLY11_20460 PF07450 Formate hydrogenlyase maturation protein HycH HLY11_20465 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HLY11_20470 PF12838 4Fe-4S dicluster domain HLY11_20475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HLY11_20475 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HLY11_20475 PF00374 Nickel-dependent hydrogenase HLY11_20480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HLY11_20480 PF00361 Proton-conducting membrane transporter HLY11_20485 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HLY11_20490 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HLY11_20490 PF00361 Proton-conducting membrane transporter HLY11_20495 PF00146 NADH dehydrogenase HLY11_20500 PF00361 Proton-conducting membrane transporter HLY11_20505 PF00037 4Fe-4S binding domain HLY11_20505 PF12798 4Fe-4S binding domain HLY11_20510 PF00578 AhpC/TSA family HLY11_20515 PF01842 ACT domain HLY11_20520 PF00701 Dihydrodipicolinate synthetase family HLY11_20525 PF06804 NlpB/DapX lipoprotein HLY11_20530 PF01259 SAICAR synthetase HLY11_20535 PF04228 Putative neutral zinc metallopeptidase HLY11_20540 PF13718 GNAT acetyltransferase 2 HLY11_20540 PF05127 Helicase HLY11_20540 PF17176 tRNA-binding domain HLY11_20540 PF08351 Domain of unknown function (DUF1726) HLY11_20545 PF02230 Phospholipase/Carboxylesterase HLY11_20550 PF13980 Uncharacterised protein family (UPF0370) HLY11_20555 PF01546 Peptidase family M20/M25/M40 HLY11_20555 PF07687 Peptidase dimerisation domain HLY11_20560 PF03960 ArsC family HLY11_20570 PF00873 AcrB/AcrD/AcrF family HLY11_20575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HLY11_20575 PF07730 Histidine kinase HLY11_20575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_20575 PF00672 HAMP domain HLY11_20580 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HLY11_20580 PF13247 4Fe-4S dicluster domain HLY11_20580 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_20585 PF00293 NUDIX domain HLY11_20590 PF06674 Protein of unknown function (DUF1176) HLY11_20595 PF02779 Transketolase, pyrimidine binding domain HLY11_20595 PF00456 Transketolase, thiamine diphosphate binding domain HLY11_20595 PF02780 Transketolase, C-terminal domain HLY11_20600 PF00923 Transaldolase/Fructose-6-phosphate aldolase HLY11_20605 PF00390 Malic enzyme, N-terminal domain HLY11_20605 PF01515 Phosphate acetyl/butaryl transferase HLY11_20605 PF03949 Malic enzyme, NAD binding domain HLY11_20610 PF00936 BMC domain HLY11_20615 PF10662 Ethanolamine utilisation - propanediol utilisation HLY11_20620 PF06249 Ethanolamine utilisation protein EutQ HLY11_20625 PF01923 Cobalamin adenosyltransferase HLY11_20630 PF01515 Phosphate acetyl/butaryl transferase HLY11_20635 PF00936 BMC domain HLY11_20640 PF03319 Ethanolamine utilisation protein EutN/carboxysome HLY11_20645 PF00171 Aldehyde dehydrogenase family HLY11_20655 PF00465 Iron-containing alcohol dehydrogenase HLY11_20660 PF04346 Ethanolamine utilisation protein, EutH HLY11_20665 PF06277 Ethanolamine utilisation protein EutA HLY11_20670 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HLY11_20675 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HLY11_20680 PF00936 BMC domain HLY11_20685 PF16365 Ethanolamine utilization protein EutK C-terminus HLY11_20685 PF00936 BMC domain HLY11_20690 PF12833 Helix-turn-helix domain HLY11_20695 PF01218 Coproporphyrinogen III oxidase HLY11_20700 PF01520 N-acetylmuramoyl-L-alanine amidase HLY11_20705 PF00583 Acetyltransferase (GNAT) family HLY11_20710 PF11143 Protein of unknown function (DUF2919) HLY11_20715 PF06572 Protein of unknown function (DUF1131) HLY11_20720 PF04261 Dyp-type peroxidase family HLY11_20725 PF00144 Beta-lactamase HLY11_20730 PF00367 phosphotransferase system, EIIB HLY11_20730 PF02378 Phosphotransferase system, EIIC HLY11_20735 PF01380 SIS domain HLY11_20740 PF01380 SIS domain HLY11_20740 PF01418 Helix-turn-helix domain, rpiR family HLY11_20755 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_20760 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_20765 PF00005 ABC transporter HLY11_20770 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_20780 PF05406 WGR domain HLY11_20785 PF17263 Family of unknown function (DUF5329) HLY11_20790 PF08543 Phosphomethylpyrimidine kinase HLY11_20795 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HLY11_20800 PF05524 PEP-utilising enzyme, N-terminal HLY11_20800 PF00391 PEP-utilising enzyme, mobile domain HLY11_20800 PF02896 PEP-utilising enzyme, TIM barrel domain HLY11_20805 PF00381 PTS HPr component phosphorylation site HLY11_20810 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_20820 PF04354 ZipA, C-terminal FtsZ-binding domain HLY11_20825 PF03120 NAD-dependent DNA ligase OB-fold domain HLY11_20825 PF00533 BRCA1 C Terminus (BRCT) domain HLY11_20825 PF12826 Helix-hairpin-helix motif HLY11_20825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HLY11_20825 PF01653 NAD-dependent DNA ligase adenylation domain HLY11_20830 PF12843 Putative quorum-sensing-regulated virulence factor HLY11_20835 PF13593 SBF-like CPA transporter family (DUF4137) HLY11_20840 PF03825 Nucleoside H+ symporter HLY11_20850 PF01048 Phosphorylase superfamily HLY11_20855 PF03825 Nucleoside H+ symporter HLY11_20860 PF03466 LysR substrate binding domain HLY11_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_20885 PF00749 tRNA synthetases class I (E and Q), catalytic domain HLY11_20890 PF07037 Putative transcription regulator (DUF1323) HLY11_20895 PF07037 Putative transcription regulator (DUF1323) HLY11_20910 PF00563 EAL domain HLY11_20910 PF05231 MASE1 HLY11_20915 PF07662 Na+ dependent nucleoside transporter C-terminus HLY11_20915 PF07670 Nucleoside recognition HLY11_20915 PF01773 Na+ dependent nucleoside transporter N-terminus HLY11_20920 PF01566 Natural resistance-associated macrophage protein HLY11_20925 PF10697 Protein of unknown function (DUF2502) HLY11_20930 PF00654 Voltage gated chloride channel HLY11_20935 PF02685 Glucokinase HLY11_20940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_20945 PF02378 Phosphotransferase system, EIIC HLY11_20950 PF01321 Creatinase/Prolidase N-terminal domain HLY11_20950 PF00557 Metallopeptidase family M24 HLY11_20955 PF05343 M42 glutamyl aminopeptidase HLY11_20960 PF05524 PEP-utilising enzyme, N-terminal HLY11_20960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_20960 PF02896 PEP-utilising enzyme, TIM barrel domain HLY11_20960 PF00391 PEP-utilising enzyme, mobile domain HLY11_20960 PF00381 PTS HPr component phosphorylation site HLY11_20965 PF12833 Helix-turn-helix domain HLY11_20970 PF04397 LytTr DNA-binding domain HLY11_20970 PF00072 Response regulator receiver domain HLY11_20975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_20975 PF06580 Histidine kinase HLY11_20975 PF07694 5TMR of 5TMR-LYT HLY11_20980 PF00155 Aminotransferase class I and II HLY11_20990 PF03279 Bacterial lipid A biosynthesis acyltransferase HLY11_20995 PF10810 Protein of unknown function (DUF2545) HLY11_21005 PF10938 YfdX protein HLY11_21010 PF02515 CoA-transferase family III HLY11_21015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_21015 PF00205 Thiamine pyrophosphate enzyme, central domain HLY11_21015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_21020 PF03547 Membrane transport protein HLY11_21025 PF02515 CoA-transferase family III HLY11_21030 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_21030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_21030 PF00072 Response regulator receiver domain HLY11_21030 PF00512 His Kinase A (phospho-acceptor) domain HLY11_21035 PF00072 Response regulator receiver domain HLY11_21035 PF00196 Bacterial regulatory proteins, luxR family HLY11_21040 PF00529 HlyD membrane-fusion protein of T1SS HLY11_21040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HLY11_21045 PF07690 Major Facilitator Superfamily HLY11_21050 PF00291 Pyridoxal-phosphate dependent enzyme HLY11_21055 PF02447 GntP family permease HLY11_21060 PF03466 LysR substrate binding domain HLY11_21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_21070 PF01226 Formate/nitrite transporter HLY11_21075 PF04333 MlaA lipoprotein HLY11_21085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HLY11_21090 PF04175 Protein of unknown function (DUF406) HLY11_21095 PF00108 Thiolase, N-terminal domain HLY11_21095 PF02803 Thiolase, C-terminal domain HLY11_21100 PF00378 Enoyl-CoA hydratase/isomerase HLY11_21100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HLY11_21100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HLY11_21105 PF00300 Histidine phosphatase superfamily (branch 1) HLY11_21110 PF00419 Fimbrial protein HLY11_21115 PF13954 PapC N-terminal domain HLY11_21115 PF00577 Outer membrane usher protein HLY11_21115 PF13953 PapC C-terminal domain HLY11_21120 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_21120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_21125 PF00419 Fimbrial protein HLY11_21130 PF00419 Fimbrial protein HLY11_21135 PF00419 Fimbrial protein HLY11_21140 PF11245 Protein of unknown function (DUF2544) HLY11_21145 PF01713 Smr domain HLY11_21150 PF05175 Methyltransferase small domain HLY11_21155 PF01264 Chorismate synthase HLY11_21160 PF03411 Penicillin-insensitive murein endopeptidase HLY11_21165 PF01925 Sulfite exporter TauE/SafE HLY11_21170 PF04315 Elongation factor P hydroxylase HLY11_21175 PF08891 YfcL protein HLY11_21185 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HLY11_21185 PF01266 FAD dependent oxidoreductase HLY11_21190 PF02801 Beta-ketoacyl synthase, C-terminal domain HLY11_21190 PF00109 Beta-ketoacyl synthase, N-terminal domain HLY11_21195 PF07690 Major Facilitator Superfamily HLY11_21205 PF11890 Domain of unknown function (DUF3410) HLY11_21205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HLY11_21205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HLY11_21210 PF02774 Semialdehyde dehydrogenase, dimerisation domain HLY11_21210 PF01118 Semialdehyde dehydrogenase, NAD binding domain HLY11_21215 PF01416 tRNA pseudouridine synthase HLY11_21220 PF09335 SNARE associated Golgi protein HLY11_21225 PF17848 Acetyl-coA carboxylase zinc finger domain HLY11_21225 PF01039 Carboxyl transferase domain HLY11_21230 PF02875 Mur ligase family, glutamate ligase domain HLY11_21230 PF08245 Mur ligase middle domain HLY11_21235 PF05036 Sporulation related domain HLY11_21240 PF02674 Colicin V production protein HLY11_21245 PF00156 Phosphoribosyl transferase domain HLY11_21250 PF02441 Flavoprotein HLY11_21255 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_21260 PF00497 Bacterial extracellular solute-binding proteins, family 3 HLY11_21265 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_21270 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_21275 PF00005 ABC transporter HLY11_21280 PF04754 Putative transposase, YhgA-like HLY11_21285 PF01370 NAD dependent epimerase/dehydratase family HLY11_21285 PF08338 Domain of unknown function (DUF1731) HLY11_21290 PF02152 Dihydroneopterin aldolase HLY11_21295 PF02798 Glutathione S-transferase, N-terminal domain HLY11_21295 PF00043 Glutathione S-transferase, C-terminal domain HLY11_21300 PF14834 Glutathione S-transferase, C-terminal domain HLY11_21300 PF02798 Glutathione S-transferase, N-terminal domain HLY11_21305 PF12850 Calcineurin-like phosphoesterase superfamily domain HLY11_21310 PF00293 NUDIX domain HLY11_21315 PF03606 C4-dicarboxylate anaerobic carrier HLY11_21320 PF01515 Phosphate acetyl/butaryl transferase HLY11_21320 PF07085 DRTGG domain HLY11_21325 PF00871 Acetokinase family HLY11_21330 PF04217 Protein of unknown function, DUF412 HLY11_21335 PF03887 YfbU domain HLY11_21340 PF13419 Haloacid dehalogenase-like hydrolase HLY11_21345 PF02080 TrkA-C domain HLY11_21345 PF03600 Citrate transporter HLY11_21355 PF00155 Aminotransferase class I and II HLY11_21360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_21360 PF03466 LysR substrate binding domain HLY11_21365 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HLY11_21370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HLY11_21375 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HLY11_21375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HLY11_21385 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HLY11_21385 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HLY11_21385 PF10531 SLBB domain HLY11_21390 PF00384 Molybdopterin oxidoreductase HLY11_21390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HLY11_21390 PF01568 Molydopterin dinucleotide binding domain HLY11_21390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HLY11_21395 PF00146 NADH dehydrogenase HLY11_21400 PF12838 4Fe-4S dicluster domain HLY11_21405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HLY11_21410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HLY11_21415 PF00361 Proton-conducting membrane transporter HLY11_21415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HLY11_21420 PF00361 Proton-conducting membrane transporter HLY11_21425 PF00361 Proton-conducting membrane transporter HLY11_21430 PF08974 Domain of unknown function (DUF1877) HLY11_21435 PF04389 Peptidase family M28 HLY11_21440 PF12450 von Willebrand factor HLY11_21440 PF12034 Domain of unknown function (DUF3520) HLY11_21440 PF00092 von Willebrand factor type A domain HLY11_21445 PF02902 Ulp1 protease family, C-terminal catalytic domain HLY11_21450 PF12706 Beta-lactamase superfamily domain HLY11_21455 PF13673 Acetyltransferase (GNAT) domain HLY11_21460 PF05957 Bacterial protein of unknown function (DUF883) HLY11_21465 PF00425 chorismate binding enzyme HLY11_21470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HLY11_21470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HLY11_21470 PF16582 Middle domain of thiamine pyrophosphate HLY11_21475 PF12697 Alpha/beta hydrolase family HLY11_21480 PF00378 Enoyl-CoA hydratase/isomerase HLY11_21485 PF13378 Enolase C-terminal domain-like HLY11_21490 PF00501 AMP-binding enzyme HLY11_21490 PF13193 AMP-binding enzyme C-terminal domain HLY11_21505 PF00892 EamA-like transporter family HLY11_21510 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HLY11_21515 PF01522 Polysaccharide deacetylase HLY11_21520 PF01370 NAD dependent epimerase/dehydratase family HLY11_21520 PF02911 Formyl transferase, C-terminal domain HLY11_21520 PF00551 Formyl transferase HLY11_21525 PF00535 Glycosyl transferase family 2 HLY11_21530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HLY11_21535 PF00300 Histidine phosphatase superfamily (branch 1) HLY11_21540 PF00293 NUDIX domain HLY11_21545 PF07437 YfaZ precursor HLY11_21550 PF00994 Probable molybdopterin binding domain HLY11_21555 PF01614 Bacterial transcriptional regulator HLY11_21555 PF09339 IclR helix-turn-helix domain HLY11_21560 PF13378 Enolase C-terminal domain-like HLY11_21560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HLY11_21565 PF07690 Major Facilitator Superfamily HLY11_21570 PF03328 HpcH/HpaI aldolase/citrate lyase family HLY11_21580 PF04754 Putative transposase, YhgA-like HLY11_21585 PF02754 Cysteine-rich domain HLY11_21585 PF13183 4Fe-4S dicluster domain HLY11_21590 PF00890 FAD binding domain HLY11_21595 PF01266 FAD dependent oxidoreductase HLY11_21595 PF04324 BFD-like [2Fe-2S] binding domain HLY11_21600 PF07690 Major Facilitator Superfamily HLY11_21605 PF03009 Glycerophosphoryl diester phosphodiesterase family HLY11_21610 PF03466 LysR substrate binding domain HLY11_21610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_21615 PF07690 Major Facilitator Superfamily HLY11_21625 PF00111 2Fe-2S iron-sulfur cluster binding domain HLY11_21630 PF00268 Ribonucleotide reductase, small chain HLY11_21635 PF00317 Ribonucleotide reductase, all-alpha domain HLY11_21635 PF02867 Ribonucleotide reductase, barrel domain HLY11_21635 PF03477 ATP cone domain HLY11_21640 PF12951 Passenger-associated-transport-repeat HLY11_21640 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat HLY11_21640 PF03797 Autotransporter beta-domain HLY11_21650 PF03989 DNA gyrase C-terminal domain, beta-propeller HLY11_21650 PF00521 DNA gyrase/topoisomerase IV, subunit A HLY11_21655 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) HLY11_21660 PF06672 Protein of unknown function (DUF1175) HLY11_21665 PF01835 MG2 domain HLY11_21665 PF00207 Alpha-2-macroglobulin family HLY11_21665 PF07703 Alpha-2-macroglobulin bait region domain HLY11_21670 PF10062 Predicted secreted protein (DUF2300) HLY11_21670 PF08486 Stage II sporulation protein HLY11_21675 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) HLY11_21680 PF09456 RcsC Alpha-Beta-Loop (ABL) HLY11_21680 PF00072 Response regulator receiver domain HLY11_21680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_21680 PF00512 His Kinase A (phospho-acceptor) domain HLY11_21685 PF00196 Bacterial regulatory proteins, luxR family HLY11_21685 PF00072 Response regulator receiver domain HLY11_21690 PF16359 RcsD-ABL domain HLY11_21690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HLY11_21690 PF01627 Hpt domain HLY11_21695 PF00267 Gram-negative porin HLY11_21700 PF02424 ApbE family HLY11_21705 PF02805 Metal binding domain of Ada HLY11_21705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HLY11_21705 PF12833 Helix-turn-helix domain HLY11_21705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HLY11_21710 PF13532 2OG-Fe(II) oxygenase superfamily HLY11_21715 PF00005 ABC transporter HLY11_21720 PF06039 Malate:quinone oxidoreductase (Mqo) HLY11_21725 PF03974 Ecotin HLY11_21730 PF00037 4Fe-4S binding domain HLY11_21730 PF12800 4Fe-4S binding domain HLY11_21730 PF13187 4Fe-4S dicluster domain HLY11_21735 PF03927 NapD protein HLY11_21740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HLY11_21740 PF00384 Molybdopterin oxidoreductase HLY11_21740 PF01568 Molydopterin dinucleotide binding domain HLY11_21745 PF12800 4Fe-4S binding domain HLY11_21745 PF12838 4Fe-4S dicluster domain HLY11_21750 PF12801 4Fe-4S binding domain HLY11_21750 PF13237 4Fe-4S dicluster domain HLY11_21755 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HLY11_21760 PF03264 NapC/NirT cytochrome c family, N-terminal region HLY11_21765 PF00005 ABC transporter HLY11_21770 PF03379 CcmB protein HLY11_21775 PF01578 Cytochrome C assembly protein HLY11_21780 PF04995 Heme exporter protein D (CcmD) HLY11_21785 PF03100 CcmE HLY11_21790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HLY11_21790 PF01578 Cytochrome C assembly protein HLY11_21795 PF08534 Redoxin HLY11_21800 PF03918 Cytochrome C biogenesis protein HLY11_21805 PF00196 Bacterial regulatory proteins, luxR family HLY11_21805 PF00072 Response regulator receiver domain HLY11_21810 PF16168 Adhesin of bacterial autotransporter system, probable stalk HLY11_21810 PF03212 Pertactin HLY11_21810 PF03797 Autotransporter beta-domain HLY11_21820 PF00884 Sulfatase HLY11_21820 PF11893 Domain of unknown function (DUF3413) HLY11_21825 PF07208 Protein of unknown function (DUF1414) HLY11_21830 PF04245 37-kD nucleoid-associated bacterial protein HLY11_21835 PF03264 NapC/NirT cytochrome c family, N-terminal region HLY11_21840 PF00890 FAD binding domain HLY11_21840 PF04205 FMN-binding domain HLY11_21840 PF03358 NADPH-dependent FMN reductase HLY11_21850 PF01386 Ribosomal L25p family HLY11_21855 PF04851 Type III restriction enzyme, res subunit HLY11_21855 PF00271 Helicase conserved C-terminal domain HLY11_21860 PF01479 S4 domain HLY11_21860 PF00849 RNA pseudouridylate synthase HLY11_21865 PF07690 Major Facilitator Superfamily HLY11_21870 PF13989 YejG-like protein HLY11_21875 PF00005 ABC transporter HLY11_21875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HLY11_21880 PF12911 N-terminal TM domain of oligopeptide transport permease C HLY11_21880 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_21885 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_21890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HLY11_21895 PF12792 CSS motif domain associated with EAL HLY11_21895 PF00563 EAL domain HLY11_21900 PF00877 NlpC/P60 family HLY11_21905 PF01569 PAP2 superfamily HLY11_21910 PF02492 CobW/HypB/UreG, nucleotide-binding domain HLY11_21910 PF07683 Cobalamin synthesis protein cobW C-terminal domain HLY11_21915 PF01232 Mannitol dehydrogenase Rossmann domain HLY11_21915 PF08125 Mannitol dehydrogenase C-terminal domain HLY11_21920 PF01132 Elongation factor P (EF-P) OB domain HLY11_21920 PF08207 Elongation factor P (EF-P) KOW-like domain HLY11_21920 PF09285 Elongation factor P, C-terminal HLY11_21925 PF03692 Putative zinc- or iron-chelating domain HLY11_21930 PF07690 Major Facilitator Superfamily HLY11_21935 PF00381 PTS HPr component phosphorylation site HLY11_21935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HLY11_21940 PF00294 pfkB family carbohydrate kinase HLY11_21945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HLY11_21945 PF02378 Phosphotransferase system, EIIC HLY11_21950 PF00294 pfkB family carbohydrate kinase HLY11_21955 PF04227 Indigoidine synthase A like protein HLY11_21960 PF07662 Na+ dependent nucleoside transporter C-terminus HLY11_21960 PF01773 Na+ dependent nucleoside transporter N-terminus HLY11_21965 PF00027 Cyclic nucleotide-binding domain HLY11_21970 PF01156 Inosine-uridine preferring nucleoside hydrolase HLY11_21975 PF01773 Na+ dependent nucleoside transporter N-terminus HLY11_21975 PF07662 Na+ dependent nucleoside transporter C-terminus HLY11_21980 PF00294 pfkB family carbohydrate kinase HLY11_21985 PF01261 Xylose isomerase-like TIM barrel HLY11_21990 PF03601 Conserved hypothetical protein 698 HLY11_21995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HLY11_21995 PF03466 LysR substrate binding domain HLY11_22000 PF00324 Amino acid permease HLY11_22005 PF00593 TonB dependent receptor HLY11_22005 PF07715 TonB-dependent Receptor Plug Domain HLY11_22010 PF07690 Major Facilitator Superfamily HLY11_22015 PF18429 Domain of unknown function (DUF5609) HLY11_22020 PF03313 Serine dehydratase alpha chain HLY11_22020 PF03315 Serine dehydratase beta chain HLY11_22030 PF00756 Putative esterase HLY11_22035 PF01227 GTP cyclohydrolase I HLY11_22040 PF04235 Protein of unknown function (DUF418) HLY11_22045 PF00356 Bacterial regulatory proteins, lacI family HLY11_22050 PF13407 Periplasmic binding protein domain HLY11_22055 PF00005 ABC transporter HLY11_22060 PF02653 Branched-chain amino acid transport system / permease component HLY11_22065 PF01180 Dihydroorotate dehydrogenase HLY11_22070 PF07992 Pyridine nucleotide-disulphide oxidoreductase HLY11_22070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HLY11_22075 PF10808 Protein of unknown function (DUF2542) HLY11_22080 PF02698 DUF218 domain HLY11_22085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HLY11_22085 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HLY11_22090 PF04172 LrgB-like family HLY11_22095 PF03788 LrgA family HLY11_22100 PF01207 Dihydrouridine synthase (Dus) HLY11_22110 PF02321 Outer membrane efflux protein HLY11_22120 PF09335 SNARE associated Golgi protein HLY11_22125 PF04893 Yip1 domain HLY11_22130 PF00768 D-alanyl-D-alanine carboxypeptidase HLY11_22135 PF09330 D-lactate dehydrogenase, membrane binding HLY11_22135 PF01565 FAD binding domain HLY11_22140 PF01915 Glycosyl hydrolase family 3 C-terminal domain HLY11_22140 PF00933 Glycosyl hydrolase family 3 N terminal domain HLY11_22140 PF14310 Fibronectin type III-like domain HLY11_22145 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HLY11_22150 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_22155 PF00005 ABC transporter HLY11_22160 PF00528 Binding-protein-dependent transport system inner membrane component HLY11_22170 PF13411 MerR HTH family regulatory protein HLY11_22175 PF07694 5TMR of 5TMR-LYT HLY11_22175 PF06580 Histidine kinase HLY11_22180 PF00072 Response regulator receiver domain HLY11_22180 PF04397 LytTr DNA-binding domain HLY11_22185 PF07308 Protein of unknown function (DUF1456) HLY11_22190 PF06998 Protein of unknown function (DUF1307) HLY11_22195 PF04434 SWIM zinc finger HLY11_22200 PF05762 VWA domain containing CoxE-like protein HLY11_22210 PF07728 AAA domain (dynein-related subfamily) HLY11_22220 PF13569 Domain of unknown function (DUF4132) HLY11_22225 PF13569 Domain of unknown function (DUF4132) HLY11_22230 PF13569 Domain of unknown function (DUF4132) HLY11_22235 PF13569 Domain of unknown function (DUF4132) HLY11_22240 PF13569 Domain of unknown function (DUF4132) HLY11_22245 PF01588 Putative tRNA binding domain HLY11_22245 PF09334 tRNA synthetases class I (M) HLY11_22250 PF10609 NUBPL iron-transfer P-loop NTPase HLY11_22255 PF10836 Protein of unknown function (DUF2574) HLY11_22260 PF00419 Fimbrial protein HLY11_22265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HLY11_22265 PF02753 Pili assembly chaperone PapD, C-terminal domain HLY11_22270 PF13953 PapC C-terminal domain HLY11_22270 PF13954 PapC N-terminal domain HLY11_22270 PF00577 Outer membrane usher protein HLY11_22275 PF00419 Fimbrial protein HLY11_22280 PF11776 Nickel/cobalt transporter regulator HLY11_22285 PF03824 High-affinity nickel-transport protein HLY11_22290 PF02583 Metal-sensitive transcriptional repressor HLY11_22295 PF02110 Hydroxyethylthiazole kinase family HLY11_22300 PF08543 Phosphomethylpyrimidine kinase HLY11_22305 PF01183 Glycosyl hydrolases family 25 HLY11_22310 PF00392 Bacterial regulatory proteins, gntR family HLY11_22310 PF07702 UTRA domain HLY11_22315 PF00294 pfkB family carbohydrate kinase HLY11_22320 PF03747 ADP-ribosylglycohydrolase HLY11_22325 PF03825 Nucleoside H+ symporter HLY11_22330 PF01791 DeoC/LacD family aldolase HLY11_22335 PF07690 Major Facilitator Superfamily HLY11_22340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_22340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_22345 PF00106 short chain dehydrogenase HLY11_22350 PF00356 Bacterial regulatory proteins, lacI family HLY11_22355 PF04198 Putative sugar-binding domain HLY11_22360 PF08125 Mannitol dehydrogenase C-terminal domain HLY11_22360 PF01232 Mannitol dehydrogenase Rossmann domain HLY11_22365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HLY11_22365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HLY11_22370 PF07690 Major Facilitator Superfamily HLY11_22375 PF13419 Haloacid dehalogenase-like hydrolase HLY11_22380 PF00781 Diacylglycerol kinase catalytic domain HLY11_22390 PF00589 Phage integrase family HLY11_22390 PF02899 Phage integrase, N-terminal SAM-like domain