BA058_00085 SM00530 Helix-turn-helix XRE-family like proteins BA058_00110 SM00267 diguanylate cyclase BA058_00145 SM00347 helix_turn_helix multiple antibiotic resistance protein BA058_00150 SM00342 helix_turn_helix, arabinose operon control protein BA058_00170 SM00866 BA058_00170 BA058_00190 SM00267 diguanylate cyclase BA058_00210 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_00210 SM00895 BA058_00210 BA058_00235 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_00330 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BA058_00330 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BA058_00355 SM00448 cheY-homologous receiver domain BA058_00355 SM00862 Transcriptional regulatory protein, C terminal BA058_00360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_00360 SM00387 Histidine kinase-like ATPases BA058_00360 SM00388 His Kinase A (phosphoacceptor) domain BA058_00415 SM00354 helix_turn _helix lactose operon repressor BA058_00475 SM00900 BA058_00475 BA058_00485 SM00478 endonuclease III BA058_00485 SM00525 BA058_00485 BA058_00510 SM00363 S4 RNA-binding domain BA058_00535 SM00347 helix_turn_helix multiple antibiotic resistance protein BA058_00585 SM00479 BA058_00585 BA058_00620 SM00354 helix_turn _helix lactose operon repressor BA058_00695 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain BA058_00720 SM00257 Lysin motif BA058_00740 SM00382 ATPases associated with a variety of cellular activities BA058_00805 SM00882 Coenzyme A transferase BA058_00815 SM00342 helix_turn_helix, arabinose operon control protein BA058_00825 SM00893 Electron transfer flavoprotein domain BA058_00830 SM00893 Electron transfer flavoprotein domain BA058_00890 SM00382 ATPases associated with a variety of cellular activities BA058_00905 SM00411 bacterial (prokaryotic) histone like domain BA058_00910 SM00873 B3/4 domain BA058_00910 SM00874 tRNA synthetase B5 domain BA058_00910 SM00896 Ferredoxin-fold anticodon binding domain BA058_00940 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BA058_01000 SM01060 BA058_01000 BA058_01015 SM00342 helix_turn_helix, arabinose operon control protein BA058_01050 SM00465 GIY-YIG type nucleases (URI domain) BA058_01125 SM00382 ATPases associated with a variety of cellular activities BA058_01130 SM00450 Rhodanese Homology Domain BA058_01150 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BA058_01155 SM00671 Sel1-like repeats. BA058_01160 SM00671 Sel1-like repeats. BA058_01170 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BA058_01170 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BA058_01170 SM00493 BA058_01170 BA058_01200 SM00870 BA058_01200 BA058_01215 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_01215 SM01134 BA058_01215 BA058_01235 SM00829 Enoylreductase BA058_01260 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA058_01280 SM00763 PrkA AAA domain BA058_01290 SM00267 diguanylate cyclase BA058_01295 SM00267 diguanylate cyclase BA058_01315 SM00342 helix_turn_helix, arabinose operon control protein BA058_01335 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BA058_01335 SM00267 diguanylate cyclase BA058_01375 SM00341 Helicase and RNase D C-terminal BA058_01375 SM00474 3'-5' exonuclease BA058_01395 SM00487 DEAD-like helicases superfamily BA058_01395 SM00491 BA058_01395 BA058_01435 SM00052 Putative diguanylate phosphodiesterase BA058_01440 SM01091 Transporter associated domain BA058_01485 SM00357 Cold shock protein domain BA058_01515 SM00346 helix_turn_helix isocitrate lyase regulation BA058_01530 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BA058_01530 SM00245 tail specific protease BA058_01535 SM00945 ProQ/FINO family BA058_01540 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BA058_01605 SM00479 BA058_01605 BA058_01675 SM00257 Lysin motif BA058_01685 SM00382 ATPases associated with a variety of cellular activities BA058_01695 SM00382 ATPases associated with a variety of cellular activities BA058_01700 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BA058_01775 SM00836 DALR anticodon binding domain BA058_01775 SM01016 Arginyl tRNA synthetase N terminal dom BA058_01800 SM00448 cheY-homologous receiver domain BA058_01805 SM00448 cheY-homologous receiver domain BA058_01810 SM00138 Methyltransferase, chemotaxis proteins BA058_01815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BA058_01815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_01815 SM00319 Homologues of the ligand binding domain of Tar BA058_01820 SM00260 Two component signalling adaptor domain BA058_01825 SM00073 Histidine Phosphotransfer domain BA058_01825 SM00260 Two component signalling adaptor domain BA058_01825 SM00387 Histidine kinase-like ATPases BA058_01825 SM01231 BA058_01825 BA058_01870 SM00382 ATPases associated with a variety of cellular activities BA058_01940 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BA058_01940 SM00465 GIY-YIG type nucleases (URI domain) BA058_01945 SM00421 helix_turn_helix, Lux Regulon BA058_01945 SM00448 cheY-homologous receiver domain BA058_01960 SM00421 helix_turn_helix, Lux Regulon BA058_01965 SM00382 ATPases associated with a variety of cellular activities BA058_01980 SM00062 Bacterial periplasmic substrate-binding proteins BA058_01980 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BA058_02015 SM00642 Alpha-amylase domain BA058_02045 SM00342 helix_turn_helix, arabinose operon control protein BA058_02085 SM00382 ATPases associated with a variety of cellular activities BA058_02135 SM00421 helix_turn_helix, Lux Regulon BA058_02155 SM00267 diguanylate cyclase BA058_02185 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BA058_02215 SM00387 Histidine kinase-like ATPases BA058_02215 SM00388 His Kinase A (phosphoacceptor) domain BA058_02220 SM00448 cheY-homologous receiver domain BA058_02220 SM00862 Transcriptional regulatory protein, C terminal BA058_02225 SM00095 Transthyretin BA058_02280 SM00255 Toll - interleukin 1 - resistance BA058_02340 SM00528 Domain in histone-like proteins of HNS family BA058_02400 SM00382 ATPases associated with a variety of cellular activities BA058_02405 SM00382 ATPases associated with a variety of cellular activities BA058_02410 SM00342 helix_turn_helix, arabinose operon control protein BA058_02415 SM00823 Phosphopantetheine attachment site BA058_02420 SM00822 BA058_02420 BA058_02420 SM00823 Phosphopantetheine attachment site BA058_02420 SM00824 Thioesterase BA058_02420 SM00825 Beta-ketoacyl synthase BA058_02420 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BA058_02455 SM00634 Bacterial Ig-like domain (group 1) BA058_02540 SM00825 Beta-ketoacyl synthase BA058_02560 SM00823 Phosphopantetheine attachment site BA058_02560 SM00825 Beta-ketoacyl synthase BA058_02565 SM00823 Phosphopantetheine attachment site BA058_02570 SM00825 Beta-ketoacyl synthase BA058_02570 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BA058_02575 SM00823 Phosphopantetheine attachment site BA058_02580 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BA058_02600 SM00823 Phosphopantetheine attachment site BA058_02600 SM00825 Beta-ketoacyl synthase BA058_02605 SM00822 BA058_02605 BA058_02605 SM00823 Phosphopantetheine attachment site BA058_02605 SM00825 Beta-ketoacyl synthase BA058_02605 SM00826 BA058_02605 BA058_02605 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BA058_02605 SM00829 Enoylreductase BA058_02610 SM00421 helix_turn_helix, Lux Regulon BA058_02665 SM00470 ParB-like nuclease domain BA058_02700 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_02790 SM00382 ATPases associated with a variety of cellular activities BA058_02815 SM00382 ATPases associated with a variety of cellular activities BA058_02925 SM00871 Bacterial transcription activator, effector binding domain BA058_02930 SM00936 Penicillin-binding protein 5, C-terminal domain BA058_02935 SM00479 BA058_02935 BA058_03010 SM00984 UDP binding domain BA058_03015 SM01350 BA058_03015 BA058_03160 SM00226 Low molecular weight phosphatase family BA058_03170 SM01091 Transporter associated domain BA058_03190 SM00052 Putative diguanylate phosphodiesterase BA058_03190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BA058_03190 SM00091 PAS domain BA058_03190 SM00267 diguanylate cyclase BA058_03195 SM00478 endonuclease III BA058_03195 SM01009 AlkA N-terminal domain BA058_03215 SM00327 von Willebrand factor (vWF) type A domain BA058_03240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_03240 SM00387 Histidine kinase-like ATPases BA058_03240 SM00388 His Kinase A (phosphoacceptor) domain BA058_03245 SM00448 cheY-homologous receiver domain BA058_03245 SM00862 Transcriptional regulatory protein, C terminal BA058_03285 SM00046 Diacylglycerol kinase catalytic domain (presumed) BA058_03290 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_03290 SM01134 BA058_03290 BA058_03295 SM00829 Enoylreductase BA058_03325 SM01133 BA058_03325 BA058_03345 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_03345 SM00866 BA058_03345 BA058_03350 SM00641 Glycosyl hydrolases family 25 BA058_03420 SM00773 Proposed nucleic acid binding domain BA058_03440 SM00382 ATPases associated with a variety of cellular activities BA058_03450 SM00327 von Willebrand factor (vWF) type A domain BA058_03475 SM00448 cheY-homologous receiver domain BA058_03475 SM00850 LytTr DNA-binding domain BA058_03480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BA058_03485 SM00422 helix_turn_helix, mercury resistance BA058_03500 SM00382 ATPases associated with a variety of cellular activities BA058_03515 SM01217 BA058_03515 BA058_03600 SM00382 ATPases associated with a variety of cellular activities BA058_03610 SM00354 helix_turn _helix lactose operon repressor BA058_03665 SM00518 AP endonuclease family 2 BA058_03685 SM00100 Cyclic nucleotide-monophosphate binding domain BA058_03730 SM00841 Elongation factor P, C-terminal BA058_03730 SM01185 BA058_03730 BA058_03740 SM00833 Cobalamin synthesis protein cobW C-terminal domain BA058_03745 SM00014 Acid phosphatase homologues BA058_03755 SM00052 Putative diguanylate phosphodiesterase BA058_03775 SM00382 ATPases associated with a variety of cellular activities BA058_03790 SM00363 S4 RNA-binding domain BA058_03795 SM00487 DEAD-like helicases superfamily BA058_03795 SM00490 helicase superfamily c-terminal domain BA058_03840 SM00421 helix_turn_helix, Lux Regulon BA058_03840 SM00448 cheY-homologous receiver domain BA058_03880 SM00382 ATPases associated with a variety of cellular activities BA058_03905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_03935 SM00382 ATPases associated with a variety of cellular activities BA058_03945 SM00342 helix_turn_helix, arabinose operon control protein BA058_03965 SM00387 Histidine kinase-like ATPases BA058_03970 SM00421 helix_turn_helix, Lux Regulon BA058_03970 SM00448 cheY-homologous receiver domain BA058_03975 SM00387 Histidine kinase-like ATPases BA058_03975 SM00388 His Kinase A (phosphoacceptor) domain BA058_03975 SM00448 cheY-homologous receiver domain BA058_03980 SM00091 PAS domain BA058_03980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_03980 SM00387 Histidine kinase-like ATPases BA058_03980 SM00388 His Kinase A (phosphoacceptor) domain BA058_03985 SM00382 ATPases associated with a variety of cellular activities BA058_03985 SM00448 cheY-homologous receiver domain BA058_03990 SM00882 Coenzyme A transferase BA058_03995 SM00882 Coenzyme A transferase BA058_04020 SM01359 BA058_04020 BA058_04020 SM01360 BA058_04020 BA058_04035 SM00434 DNA Topoisomerase IV BA058_04045 SM00869 Autotransporter beta-domain BA058_04125 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_04130 SM00346 helix_turn_helix isocitrate lyase regulation BA058_04135 SM00852 Probable molybdopterin binding domain BA058_04200 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_04235 SM00849 Metallo-beta-lactamase superfamily BA058_04290 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_04290 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BA058_04295 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BA058_04330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BA058_04395 SM00905 Dihydroneopterin aldolase BA058_04410 SM00382 ATPases associated with a variety of cellular activities BA058_04425 SM00062 Bacterial periplasmic substrate-binding proteins BA058_04430 SM00062 Bacterial periplasmic substrate-binding proteins BA058_04475 SM00859 Semialdehyde dehydrogenase, NAD binding domain BA058_04495 SM00825 Beta-ketoacyl synthase BA058_04535 SM00463 Small MutS-related domain BA058_04635 SM00640 Glycosyl hydrolases family 32 BA058_04640 SM00354 helix_turn _helix lactose operon repressor BA058_04665 SM00421 helix_turn_helix, Lux Regulon BA058_04665 SM00448 cheY-homologous receiver domain BA058_04670 SM00062 Bacterial periplasmic substrate-binding proteins BA058_04670 SM00073 Histidine Phosphotransfer domain BA058_04670 SM00387 Histidine kinase-like ATPases BA058_04670 SM00388 His Kinase A (phosphoacceptor) domain BA058_04670 SM00448 cheY-homologous receiver domain BA058_04805 SM00528 Domain in histone-like proteins of HNS family BA058_04810 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BA058_04810 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BA058_04810 SM00493 BA058_04810 BA058_04815 SM00382 ATPases associated with a variety of cellular activities BA058_04820 SM00318 Staphylococcal nuclease homologues BA058_04925 SM00387 Histidine kinase-like ATPases BA058_04930 SM00448 cheY-homologous receiver domain BA058_04930 SM00850 LytTr DNA-binding domain BA058_04935 SM00342 helix_turn_helix, arabinose operon control protein BA058_04995 SM00052 Putative diguanylate phosphodiesterase BA058_04995 SM00267 diguanylate cyclase BA058_05085 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BA058_05085 SM00292 breast cancer carboxy-terminal domain BA058_05085 SM00532 Ligase N family BA058_05090 SM00771 ZipA, C-terminal domain (FtsZ-binding) BA058_05135 SM00382 ATPases associated with a variety of cellular activities BA058_05155 SM00822 BA058_05155 BA058_05190 SM00646 BA058_05190 BA058_05200 SM00342 helix_turn_helix, arabinose operon control protein BA058_05205 SM00877 BA058_05205 BA058_05210 SM00877 BA058_05210 BA058_05255 SM00877 BA058_05255 BA058_05280 SM00877 BA058_05280 BA058_05285 SM00919 Malic enzyme, NAD binding domain BA058_05285 SM01274 BA058_05285 BA058_05295 SM00861 Transketolase, pyrimidine binding domain BA058_05315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_05315 SM00387 Histidine kinase-like ATPases BA058_05375 SM01130 BA058_05375 BA058_05470 SM00116 Domain in cystathionine beta-synthase and other proteins. BA058_05470 SM01240 BA058_05470 BA058_05505 SM00564 beta-propeller repeat BA058_05525 SM00530 Helix-turn-helix XRE-family like proteins BA058_05535 SM00562 BA058_05535 BA058_05545 SM01359 BA058_05545 BA058_05545 SM01360 BA058_05545 BA058_05550 SM00450 Rhodanese Homology Domain BA058_05580 SM00271 DnaJ molecular chaperone homology domain BA058_05655 SM00829 Enoylreductase BA058_05665 SM00382 ATPases associated with a variety of cellular activities BA058_05675 SM00028 Tetratricopeptide repeats BA058_05695 SM00938 Nitrogen regulatory protein P-II BA058_05700 SM00382 ATPases associated with a variety of cellular activities BA058_05700 SM00448 cheY-homologous receiver domain BA058_05710 SM00387 Histidine kinase-like ATPases BA058_05710 SM00388 His Kinase A (phosphoacceptor) domain BA058_05715 SM01211 BA058_05715 BA058_05720 SM00062 Bacterial periplasmic substrate-binding proteins BA058_05775 SM00358 Double-stranded RNA binding motif BA058_05775 SM00535 Ribonuclease III family BA058_05825 SM00487 DEAD-like helicases superfamily BA058_05825 SM00490 helicase superfamily c-terminal domain BA058_05845 SM00986 Uracil DNA glycosylase superfamily BA058_05845 SM00987 UreE urease accessory protein, C-terminal domain BA058_05850 SM00967 RNA 2'-O ribose methyltransferase substrate binding BA058_05865 SM01144 BA058_05865 BA058_05870 SM00881 CoA binding domain BA058_05875 SM00155 Phospholipase D. Active site motifs. BA058_05940 SM00382 ATPases associated with a variety of cellular activities BA058_05940 SM01086 C-terminal, D2-small domain, of ClpB protein BA058_05950 SM00363 S4 RNA-binding domain BA058_05970 SM00830 Chorismate mutase type II BA058_05975 SM00830 Chorismate mutase type II BA058_05995 SM00267 diguanylate cyclase BA058_06025 SM00382 ATPases associated with a variety of cellular activities BA058_06025 SM00962 SRP54-type protein, GTPase domain BA058_06025 SM00963 SRP54-type protein, helical bundle domain BA058_06035 SM01091 Transporter associated domain BA058_06145 SM00528 Domain in histone-like proteins of HNS family BA058_06250 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_06250 SM00895 BA058_06250 BA058_06255 SM00257 Lysin motif BA058_06255 SM00749 bacterial OsmY and nodulation domain BA058_06265 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BA058_06270 SM00450 Rhodanese Homology Domain BA058_06275 SM00528 Domain in histone-like proteins of HNS family BA058_06295 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_06325 SM00382 ATPases associated with a variety of cellular activities BA058_06355 SM00347 helix_turn_helix multiple antibiotic resistance protein BA058_06420 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BA058_06435 SM00382 ATPases associated with a variety of cellular activities BA058_06475 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_06475 SM01134 BA058_06475 BA058_06485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BA058_06485 SM00382 ATPases associated with a variety of cellular activities BA058_06490 SM00849 Metallo-beta-lactamase superfamily BA058_06510 SM00354 helix_turn _helix lactose operon repressor BA058_06525 SM00530 Helix-turn-helix XRE-family like proteins BA058_06605 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BA058_06605 SM00382 ATPases associated with a variety of cellular activities BA058_06645 SM00382 ATPases associated with a variety of cellular activities BA058_06665 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BA058_06665 SM00534 ATPase domain of DNA mismatch repair MUTS family BA058_06675 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_06675 SM01134 BA058_06675 BA058_06690 SM01007 Class II Aldolase and Adducin N-terminal domain BA058_06705 SM00849 Metallo-beta-lactamase superfamily BA058_06720 SM00257 Lysin motif BA058_06825 SM00893 Electron transfer flavoprotein domain BA058_06870 SM00640 Glycosyl hydrolases family 32 BA058_06875 SM00354 helix_turn _helix lactose operon repressor BA058_06905 SM01192 BA058_06905 BA058_06905 SM01193 BA058_06905 BA058_06925 SM00966 SpoVT / AbrB like domain BA058_06930 SM00954 Region found in RelA / SpoT proteins BA058_06940 SM00073 Histidine Phosphotransfer domain BA058_06940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_06940 SM00387 Histidine kinase-like ATPases BA058_06940 SM00388 His Kinase A (phosphoacceptor) domain BA058_06940 SM00448 cheY-homologous receiver domain BA058_06945 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_06950 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_07005 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BA058_07005 SM00475 5'-3' exonuclease BA058_07015 SM01007 Class II Aldolase and Adducin N-terminal domain BA058_07040 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_07040 SM01134 BA058_07040 BA058_07080 SM00925 MltA specific insert domain BA058_07130 SM00382 ATPases associated with a variety of cellular activities BA058_07130 SM01086 C-terminal, D2-small domain, of ClpB protein BA058_07155 SM01351 BA058_07155 BA058_07230 SM01061 CAT RNA binding domain BA058_07235 SM00646 BA058_07235 BA058_07245 SM00382 ATPases associated with a variety of cellular activities BA058_07295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BA058_07315 SM00927 DNA mismatch repair enzyme MutH BA058_07340 SM00563 Phosphate acyltransferases BA058_07345 SM00354 helix_turn _helix lactose operon repressor BA058_07395 SM00257 Lysin motif BA058_07400 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BA058_07405 SM01092 CO dehydrogenase flavoprotein C-terminal domain BA058_07415 SM00091 PAS domain BA058_07415 SM00382 ATPases associated with a variety of cellular activities BA058_07470 SM01092 CO dehydrogenase flavoprotein C-terminal domain BA058_07475 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BA058_07530 SM00937 BA058_07530 BA058_07575 SM01022 BA058_07575 BA058_07610 SM01011 Aminopeptidase P, N-terminal domain BA058_07695 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA058_07715 SM00382 ATPases associated with a variety of cellular activities BA058_07755 SM00244 prohibitin homologues BA058_07760 SM00861 Transketolase, pyrimidine binding domain BA058_07810 SM00731 SprT homologues. BA058_07835 SM00732 Likely ribonuclease with RNase H fold. BA058_07840 SM00382 ATPases associated with a variety of cellular activities BA058_07855 SM01152 BA058_07855 BA058_07865 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_07875 SM00870 BA058_07875 BA058_07900 SM00478 endonuclease III BA058_07900 SM00525 BA058_07900 BA058_07940 SM00028 Tetratricopeptide repeats BA058_08000 SM00347 helix_turn_helix multiple antibiotic resistance protein BA058_08075 SM00448 cheY-homologous receiver domain BA058_08080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_08080 SM00387 Histidine kinase-like ATPases BA058_08080 SM00388 His Kinase A (phosphoacceptor) domain BA058_08105 SM01040 BRO family, N-terminal domain BA058_08195 SM00563 Phosphate acyltransferases BA058_08250 SM00825 Beta-ketoacyl synthase BA058_08265 SM00825 Beta-ketoacyl synthase BA058_08270 SM00354 helix_turn _helix lactose operon repressor BA058_08310 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_08310 SM01134 BA058_08310 BA058_08380 SM00869 Autotransporter beta-domain BA058_08490 SM00984 UDP binding domain BA058_08520 SM00382 ATPases associated with a variety of cellular activities BA058_08570 SM00382 ATPases associated with a variety of cellular activities BA058_08595 SM01276 BA058_08595 BA058_08635 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_08635 SM00895 BA058_08635 BA058_08815 SM00342 helix_turn_helix, arabinose operon control protein BA058_08845 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_08850 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_08850 SM00895 BA058_08850 BA058_08890 SM00563 Phosphate acyltransferases BA058_08895 SM00434 DNA Topoisomerase IV BA058_08905 SM00871 Bacterial transcription activator, effector binding domain BA058_08915 SM00448 cheY-homologous receiver domain BA058_08915 SM00862 Transcriptional regulatory protein, C terminal BA058_08920 SM00387 Histidine kinase-like ATPases BA058_08920 SM00388 His Kinase A (phosphoacceptor) domain BA058_08970 SM00382 ATPases associated with a variety of cellular activities BA058_08985 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_08985 SM00866 BA058_08985 BA058_09020 SM00387 Histidine kinase-like ATPases BA058_09020 SM00433 TopoisomeraseII BA058_09115 SM00244 prohibitin homologues BA058_09135 SM01118 BA058_09135 BA058_09145 SM00287 Bacterial SH3 domain homologues BA058_09160 SM00905 Dihydroneopterin aldolase BA058_09165 SM01207 BA058_09165 BA058_09200 SM00400 zinc finger BA058_09200 SM00493 BA058_09200 BA058_09200 SM00766 DNA primase DnaG DnaB-binding BA058_09230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BA058_09230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BA058_09245 SM00354 helix_turn _helix lactose operon repressor BA058_09250 SM01038 Beta galactosidase small chain BA058_09280 SM00530 Helix-turn-helix XRE-family like proteins BA058_09325 SM00858 BA058_09325 BA058_09360 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_09360 SM00895 BA058_09360 BA058_09500 SM00858 BA058_09500 BA058_09515 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_09515 SM01134 BA058_09515 BA058_09600 SM00749 bacterial OsmY and nodulation domain BA058_09610 SM00859 Semialdehyde dehydrogenase, NAD binding domain BA058_09625 SM00465 GIY-YIG type nucleases (URI domain) BA058_09665 SM00487 DEAD-like helicases superfamily BA058_09665 SM00490 helicase superfamily c-terminal domain BA058_09670 SM00028 Tetratricopeptide repeats BA058_09675 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_09675 SM00322 K homology RNA-binding domain BA058_09680 SM01387 BA058_09680 BA058_09700 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_09750 SM00382 ATPases associated with a variety of cellular activities BA058_09760 SM01103 BA058_09760 BA058_09835 SM00382 ATPases associated with a variety of cellular activities BA058_09865 SM00382 ATPases associated with a variety of cellular activities BA058_09910 SM00073 Histidine Phosphotransfer domain BA058_09910 SM00091 PAS domain BA058_09910 SM00387 Histidine kinase-like ATPases BA058_09910 SM00388 His Kinase A (phosphoacceptor) domain BA058_09910 SM00448 cheY-homologous receiver domain BA058_09915 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_09955 SM01130 BA058_09955 BA058_09960 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_09960 SM00895 BA058_09960 BA058_09995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BA058_10000 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BA058_10055 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_10085 SM00052 Putative diguanylate phosphodiesterase BA058_10085 SM00267 diguanylate cyclase BA058_10090 SM00829 Enoylreductase BA058_10110 SM00878 Biotin carboxylase C-terminal domain BA058_10130 SM00382 ATPases associated with a variety of cellular activities BA058_10145 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_10145 SM01134 BA058_10145 BA058_10220 SM00062 Bacterial periplasmic substrate-binding proteins BA058_10235 SM00382 ATPases associated with a variety of cellular activities BA058_10340 SM00422 helix_turn_helix, mercury resistance BA058_10355 SM00662 RNA polymerases D BA058_10360 SM00363 S4 RNA-binding domain BA058_10360 SM01390 BA058_10360 BA058_10425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BA058_10430 SM01374 BA058_10430 BA058_10450 SM00322 K homology RNA-binding domain BA058_10465 SM01382 BA058_10465 BA058_10465 SM01383 BA058_10465 BA058_10485 SM01403 BA058_10485 BA058_10510 SM00382 ATPases associated with a variety of cellular activities BA058_10570 SM00495 Chitin-binding domain type 3 BA058_10580 SM00838 Elongation factor G C-terminus BA058_10580 SM00889 Elongation factor G, domain IV BA058_10645 SM00382 ATPases associated with a variety of cellular activities BA058_10675 SM00100 Cyclic nucleotide-monophosphate binding domain BA058_10675 SM00419 helix_turn_helix, cAMP Regulatory protein BA058_10815 SM00965 Secretin and TonB N terminus short domain BA058_10860 SM00363 S4 RNA-binding domain BA058_10885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_10885 SM00387 Histidine kinase-like ATPases BA058_10885 SM00388 His Kinase A (phosphoacceptor) domain BA058_10890 SM00448 cheY-homologous receiver domain BA058_10890 SM00862 Transcriptional regulatory protein, C terminal BA058_10900 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_10900 SM00732 Likely ribonuclease with RNase H fold. BA058_10905 SM00899 BA058_10905 BA058_10955 SM00421 helix_turn_helix, Lux Regulon BA058_10970 SM00382 ATPases associated with a variety of cellular activities BA058_10975 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_10975 SM01134 BA058_10975 BA058_10985 SM00450 Rhodanese Homology Domain BA058_11060 SM00642 Alpha-amylase domain BA058_11065 SM00642 Alpha-amylase domain BA058_11070 SM00859 Semialdehyde dehydrogenase, NAD binding domain BA058_11085 SM00487 DEAD-like helicases superfamily BA058_11085 SM00490 helicase superfamily c-terminal domain BA058_11100 SM00354 helix_turn _helix lactose operon repressor BA058_11155 SM00382 ATPases associated with a variety of cellular activities BA058_11180 SM00382 ATPases associated with a variety of cellular activities BA058_11185 SM00382 ATPases associated with a variety of cellular activities BA058_11230 SM00382 ATPases associated with a variety of cellular activities BA058_11235 SM00382 ATPases associated with a variety of cellular activities BA058_11235 SM00962 SRP54-type protein, GTPase domain BA058_11235 SM00963 SRP54-type protein, helical bundle domain BA058_11310 SM00382 ATPases associated with a variety of cellular activities BA058_11315 SM00382 ATPases associated with a variety of cellular activities BA058_11330 SM00382 ATPases associated with a variety of cellular activities BA058_11410 SM00421 helix_turn_helix, Lux Regulon BA058_11435 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_11455 SM00382 ATPases associated with a variety of cellular activities BA058_11500 SM00342 helix_turn_helix, arabinose operon control protein BA058_11505 SM00342 helix_turn_helix, arabinose operon control protein BA058_11515 SM01235 BA058_11515 BA058_11525 SM00421 helix_turn_helix, Lux Regulon BA058_11550 SM00052 Putative diguanylate phosphodiesterase BA058_11575 SM00052 Putative diguanylate phosphodiesterase BA058_11575 SM00267 diguanylate cyclase BA058_11580 SM00028 Tetratricopeptide repeats BA058_11640 SM00382 ATPases associated with a variety of cellular activities BA058_11645 SM00382 ATPases associated with a variety of cellular activities BA058_11725 SM00530 Helix-turn-helix XRE-family like proteins BA058_11730 SM00357 Cold shock protein domain BA058_11785 SM00382 ATPases associated with a variety of cellular activities BA058_11795 SM00342 helix_turn_helix, arabinose operon control protein BA058_11800 SM00047 Lysozyme subfamily 2 BA058_11805 SM00642 Alpha-amylase domain BA058_11825 SM00346 helix_turn_helix isocitrate lyase regulation BA058_11865 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BA058_11875 SM01007 Class II Aldolase and Adducin N-terminal domain BA058_11955 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_11955 SM00895 BA058_11955 BA058_11970 SM00971 Serine acetyltransferase, N-terminal BA058_11990 SM00450 Rhodanese Homology Domain BA058_12015 SM00829 Enoylreductase BA058_12095 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BA058_12095 SM01232 BA058_12095 BA058_12155 SM00532 Ligase N family BA058_12160 SM00072 Guanylate kinase homologues. BA058_12165 SM01409 BA058_12165 BA058_12170 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BA058_12170 SM00954 Region found in RelA / SpoT proteins BA058_12180 SM00487 DEAD-like helicases superfamily BA058_12180 SM00490 helicase superfamily c-terminal domain BA058_12310 SM00493 BA058_12310 BA058_12310 SM00778 Zinc-binding domain of primase-helicase BA058_12310 SM00885 D5 N terminal like BA058_12385 SM00387 Histidine kinase-like ATPases BA058_12390 SM00421 helix_turn_helix, Lux Regulon BA058_12390 SM00448 cheY-homologous receiver domain BA058_12450 SM00342 helix_turn_helix, arabinose operon control protein BA058_12490 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_12505 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_12505 SM00895 BA058_12505 BA058_12530 SM00387 Histidine kinase-like ATPases BA058_12530 SM00433 TopoisomeraseII BA058_12540 SM00480 DNA polymerase III beta subunit BA058_12545 SM00382 ATPases associated with a variety of cellular activities BA058_12545 SM00760 Bacterial dnaA protein helix-turn-helix domain BA058_12560 SM01234 BA058_12560 BA058_12650 SM01061 CAT RNA binding domain BA058_12660 SM00382 ATPases associated with a variety of cellular activities BA058_12695 SM00382 ATPases associated with a variety of cellular activities BA058_12740 SM01228 BA058_12740 BA058_12750 SM00344 helix_turn_helix ASNC type BA058_12760 SM00327 von Willebrand factor (vWF) type A domain BA058_12765 SM00382 ATPases associated with a variety of cellular activities BA058_12780 SM00382 ATPases associated with a variety of cellular activities BA058_12800 SM00354 helix_turn _helix lactose operon repressor BA058_12810 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_12810 SM00895 BA058_12810 BA058_12855 SM00382 ATPases associated with a variety of cellular activities BA058_12915 SM00487 DEAD-like helicases superfamily BA058_12915 SM00490 helicase superfamily c-terminal domain BA058_12930 SM00357 Cold shock protein domain BA058_12930 SM00382 ATPases associated with a variety of cellular activities BA058_12930 SM00959 Rho termination factor, N-terminal domain BA058_12955 SM00984 UDP binding domain BA058_13060 SM01219 BA058_13060 BA058_13140 SM00341 Helicase and RNase D C-terminal BA058_13140 SM00487 DEAD-like helicases superfamily BA058_13140 SM00490 helicase superfamily c-terminal domain BA058_13140 SM00956 BA058_13140 BA058_13205 SM00861 Transketolase, pyrimidine binding domain BA058_13295 SM00346 helix_turn_helix isocitrate lyase regulation BA058_13340 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BA058_13440 SM00563 Phosphate acyltransferases BA058_13450 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BA058_13450 SM00474 3'-5' exonuclease BA058_13450 SM00475 5'-3' exonuclease BA058_13450 SM00482 DNA polymerase A domain BA058_13465 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_13475 SM00382 ATPases associated with a variety of cellular activities BA058_13475 SM00448 cheY-homologous receiver domain BA058_13480 SM00091 PAS domain BA058_13480 SM00387 Histidine kinase-like ATPases BA058_13480 SM00388 His Kinase A (phosphoacceptor) domain BA058_13485 SM01230 BA058_13485 BA058_13500 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_13500 SM00866 BA058_13500 BA058_13515 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_13515 SM01134 BA058_13515 BA058_13530 SM01133 BA058_13530 BA058_13535 SM00829 Enoylreductase BA058_13585 SM00530 Helix-turn-helix XRE-family like proteins BA058_13620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_13645 SM01007 Class II Aldolase and Adducin N-terminal domain BA058_13665 SM00342 helix_turn_helix, arabinose operon control protein BA058_13670 SM00342 helix_turn_helix, arabinose operon control protein BA058_13700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_13700 SM00387 Histidine kinase-like ATPases BA058_13700 SM00388 His Kinase A (phosphoacceptor) domain BA058_13705 SM00448 cheY-homologous receiver domain BA058_13705 SM00862 Transcriptional regulatory protein, C terminal BA058_13795 SM00382 ATPases associated with a variety of cellular activities BA058_13795 SM01086 C-terminal, D2-small domain, of ClpB protein BA058_13810 SM00354 helix_turn _helix lactose operon repressor BA058_13815 SM00487 DEAD-like helicases superfamily BA058_13815 SM00490 helicase superfamily c-terminal domain BA058_13935 SM00342 helix_turn_helix, arabinose operon control protein BA058_13955 SM00859 Semialdehyde dehydrogenase, NAD binding domain BA058_13970 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_14095 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BA058_14095 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BA058_14100 SM00649 Ribosomal protein L11/L12 BA058_14125 SM00663 RNA polymerase I subunit A N-terminus BA058_14130 SM00876 Biotin and Thiamin Synthesis associated domain BA058_14185 SM00411 bacterial (prokaryotic) histone like domain BA058_14200 SM00387 Histidine kinase-like ATPases BA058_14200 SM00388 His Kinase A (phosphoacceptor) domain BA058_14205 SM00382 ATPases associated with a variety of cellular activities BA058_14205 SM00448 cheY-homologous receiver domain BA058_14210 SM01209 BA058_14210 BA058_14210 SM01210 BA058_14210 BA058_14215 SM00798 AICARFT/IMPCHase bienzyme BA058_14215 SM00851 MGS-like domain BA058_14270 SM00346 helix_turn_helix isocitrate lyase regulation BA058_14275 SM01018 B12 binding domain BA058_14330 SM00822 BA058_14330 BA058_14340 SM00363 S4 RNA-binding domain BA058_14415 SM00382 ATPases associated with a variety of cellular activities BA058_14440 SM00563 Phosphate acyltransferases BA058_14545 SM00994 ClpX C4-type zinc finger BA058_14550 SM00530 Helix-turn-helix XRE-family like proteins BA058_14590 SM01252 BA058_14590 BA058_14595 SM00507 HNH nucleases BA058_14630 SM00507 HNH nucleases BA058_14770 SM00829 Enoylreductase BA058_14775 SM00382 ATPases associated with a variety of cellular activities BA058_14785 SM01005 Alanine racemase, C-terminal domain BA058_14805 SM00861 Transketolase, pyrimidine binding domain BA058_14825 SM00881 CoA binding domain BA058_14840 SM00382 ATPases associated with a variety of cellular activities BA058_14840 SM00448 cheY-homologous receiver domain BA058_14845 SM00387 Histidine kinase-like ATPases BA058_14880 SM00052 Putative diguanylate phosphodiesterase BA058_14885 SM00342 helix_turn_helix, arabinose operon control protein BA058_14890 SM00422 helix_turn_helix, mercury resistance BA058_14965 SM00028 Tetratricopeptide repeats BA058_14985 SM00671 Sel1-like repeats. BA058_14990 SM00382 ATPases associated with a variety of cellular activities BA058_14995 SM00382 ATPases associated with a variety of cellular activities BA058_15020 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_15045 SM00849 Metallo-beta-lactamase superfamily BA058_15065 SM00382 ATPases associated with a variety of cellular activities BA058_15100 SM00072 Guanylate kinase homologues. BA058_15110 SM00382 ATPases associated with a variety of cellular activities BA058_15115 SM00382 ATPases associated with a variety of cellular activities BA058_15140 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_15140 SM00866 BA058_15140 BA058_15155 SM00382 ATPases associated with a variety of cellular activities BA058_15190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_15190 SM00387 Histidine kinase-like ATPases BA058_15190 SM00388 His Kinase A (phosphoacceptor) domain BA058_15195 SM00448 cheY-homologous receiver domain BA058_15195 SM00862 Transcriptional regulatory protein, C terminal BA058_15210 SM00342 helix_turn_helix, arabinose operon control protein BA058_15220 SM00342 helix_turn_helix, arabinose operon control protein BA058_15255 SM00448 cheY-homologous receiver domain BA058_15260 SM00091 PAS domain BA058_15260 SM00387 Histidine kinase-like ATPases BA058_15305 SM00862 Transcriptional regulatory protein, C terminal BA058_15355 SM00883 Chaperonin 10 Kd subunit BA058_15380 SM00841 Elongation factor P, C-terminal BA058_15380 SM01185 BA058_15380 BA058_15455 SM00479 BA058_15455 BA058_15490 SM00646 BA058_15490 BA058_15495 SM00853 MutL C terminal dimerisation domain BA058_15495 SM01340 BA058_15495 BA058_15515 SM00244 prohibitin homologues BA058_15520 SM00244 prohibitin homologues BA058_15530 SM00788 Adenylosuccinate synthetase BA058_15540 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_15540 SM00357 Cold shock protein domain BA058_15540 SM00955 BA058_15540 BA058_15545 SM00967 RNA 2'-O ribose methyltransferase substrate binding BA058_15600 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_15600 SM01134 BA058_15600 BA058_15625 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BA058_15635 SM01007 Class II Aldolase and Adducin N-terminal domain BA058_15670 SM00530 Helix-turn-helix XRE-family like proteins BA058_15690 SM00882 Coenzyme A transferase BA058_15770 SM01091 Transporter associated domain BA058_15810 SM00382 ATPases associated with a variety of cellular activities BA058_15865 SM00642 Alpha-amylase domain BA058_15875 SM00354 helix_turn _helix lactose operon repressor BA058_15880 SM00831 Cation transporter/ATPase, N-terminus BA058_15985 SM00354 helix_turn _helix lactose operon repressor BA058_16010 SM00829 Enoylreductase BA058_16050 SM00347 helix_turn_helix multiple antibiotic resistance protein BA058_16115 SM00850 LytTr DNA-binding domain BA058_16160 SM01240 BA058_16160 BA058_16230 SM00382 ATPases associated with a variety of cellular activities BA058_16260 SM00448 cheY-homologous receiver domain BA058_16260 SM00862 Transcriptional regulatory protein, C terminal BA058_16265 SM00387 Histidine kinase-like ATPases BA058_16265 SM00388 His Kinase A (phosphoacceptor) domain BA058_16290 SM00387 Histidine kinase-like ATPases BA058_16330 SM00710 Parallel beta-helix repeats BA058_16330 SM00912 haemagglutination activity domain BA058_16410 SM00877 BA058_16410 BA058_16440 SM00877 BA058_16440 BA058_16445 SM00877 BA058_16445 BA058_16450 SM00877 BA058_16450 BA058_16465 SM00862 Transcriptional regulatory protein, C terminal BA058_16500 SM00382 ATPases associated with a variety of cellular activities BA058_16715 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_16715 SM00895 BA058_16715 BA058_16815 SM00487 DEAD-like helicases superfamily BA058_16825 SM00833 Cobalamin synthesis protein cobW C-terminal domain BA058_16845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BA058_16845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_16845 SM00319 Homologues of the ligand binding domain of Tar BA058_16870 SM00895 BA058_16870 BA058_16875 SM00829 Enoylreductase BA058_16890 SM00382 ATPases associated with a variety of cellular activities BA058_16910 SM00421 helix_turn_helix, Lux Regulon BA058_16915 SM00421 helix_turn_helix, Lux Regulon BA058_17020 SM00530 Helix-turn-helix XRE-family like proteins BA058_17025 SM00530 Helix-turn-helix XRE-family like proteins BA058_17070 SM01252 BA058_17070 BA058_17075 SM00507 HNH nucleases BA058_17180 SM00635 Bacterial Ig-like domain 2 BA058_17210 SM00232 JAB/MPN domain BA058_17220 SM00060 Fibronectin type 3 domain BA058_17240 SM00382 ATPases associated with a variety of cellular activities BA058_17260 SM00749 bacterial OsmY and nodulation domain BA058_17295 SM01133 BA058_17295 BA058_17300 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BA058_17315 SM00530 Helix-turn-helix XRE-family like proteins BA058_17335 SM00382 ATPases associated with a variety of cellular activities BA058_17340 SM00530 Helix-turn-helix XRE-family like proteins BA058_17350 SM00530 Helix-turn-helix XRE-family like proteins BA058_17355 SM00382 ATPases associated with a variety of cellular activities BA058_17375 SM00855 Phosphoglycerate mutase family BA058_17380 SM00342 helix_turn_helix, arabinose operon control protein BA058_17380 SM00871 Bacterial transcription activator, effector binding domain BA058_17390 SM00448 cheY-homologous receiver domain BA058_17390 SM00862 Transcriptional regulatory protein, C terminal BA058_17395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_17395 SM00387 Histidine kinase-like ATPases BA058_17395 SM00388 His Kinase A (phosphoacceptor) domain BA058_17405 SM00448 cheY-homologous receiver domain BA058_17405 SM00862 Transcriptional regulatory protein, C terminal BA058_17465 SM00852 Probable molybdopterin binding domain BA058_17495 SM00271 DnaJ molecular chaperone homology domain BA058_17540 SM00904 Riboflavin kinase BA058_17585 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BA058_17590 SM00851 MGS-like domain BA058_17590 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BA058_17635 SM00893 Electron transfer flavoprotein domain BA058_17640 SM00893 Electron transfer flavoprotein domain BA058_17695 SM00650 Ribosomal RNA adenine dimethylases BA058_17715 SM00271 DnaJ molecular chaperone homology domain BA058_17725 SM00487 DEAD-like helicases superfamily BA058_17725 SM00490 helicase superfamily c-terminal domain BA058_17730 SM00486 DNA polymerase type-B family BA058_17735 SM01007 Class II Aldolase and Adducin N-terminal domain BA058_17750 SM00342 helix_turn_helix, arabinose operon control protein BA058_17770 SM00382 ATPases associated with a variety of cellular activities BA058_17805 SM01329 BA058_17805 BA058_17810 SM00917 LeuA allosteric (dimerisation) domain BA058_17840 SM00354 helix_turn _helix lactose operon repressor BA058_17910 SM00842 Cell division protein FtsA BA058_17915 SM00864 Tubulin/FtsZ family, GTPase domain BA058_17915 SM00865 Tubulin/FtsZ family, C-terminal domain BA058_17930 SM00957 SecA DEAD-like domain BA058_17930 SM00958 SecA preprotein cross-linking domain BA058_17955 SM01240 BA058_17955 BA058_17985 SM00644 BA058_17985 BA058_18025 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_18025 SM00895 BA058_18025 BA058_18085 SM00564 beta-propeller repeat BA058_18095 SM00947 Carbonic anhydrase BA058_18100 SM00382 ATPases associated with a variety of cellular activities BA058_18210 SM00487 DEAD-like helicases superfamily BA058_18210 SM00490 helicase superfamily c-terminal domain BA058_18210 SM00847 Helicase associated domain (HA2) Add an annotation BA058_18225 SM00382 ATPases associated with a variety of cellular activities BA058_18270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BA058_18275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BA058_18295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BA058_18340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BA058_18350 SM00935 Outer membrane protein (OmpH-like) BA058_18380 SM00481 DNA polymerase alpha chain like domain BA058_18400 SM00977 TilS substrate C-terminal domain BA058_18415 SM01322 BA058_18415 BA058_18460 SM00382 ATPases associated with a variety of cellular activities BA058_18460 SM00930 BA058_18460 BA058_18520 SM00257 Lysin motif BA058_18525 SM00849 Metallo-beta-lactamase superfamily BA058_18540 SM00479 BA058_18540 BA058_18580 SM00382 ATPases associated with a variety of cellular activities BA058_18580 SM01086 C-terminal, D2-small domain, of ClpB protein BA058_18715 SM01321 BA058_18715 BA058_18785 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BA058_18850 SM00382 ATPases associated with a variety of cellular activities BA058_18955 SM00052 Putative diguanylate phosphodiesterase BA058_18960 SM00347 helix_turn_helix multiple antibiotic resistance protein BA058_18980 SM00382 ATPases associated with a variety of cellular activities BA058_19025 SM00833 Cobalamin synthesis protein cobW C-terminal domain BA058_19040 SM00382 ATPases associated with a variety of cellular activities BA058_19070 SM00342 helix_turn_helix, arabinose operon control protein BA058_19100 SM00869 Autotransporter beta-domain BA058_19155 SM00382 ATPases associated with a variety of cellular activities BA058_19170 SM00869 Autotransporter beta-domain BA058_19230 SM00421 helix_turn_helix, Lux Regulon BA058_19280 SM00634 Bacterial Ig-like domain (group 1) BA058_19285 SM00342 helix_turn_helix, arabinose operon control protein BA058_19285 SM00871 Bacterial transcription activator, effector binding domain BA058_19310 SM00342 helix_turn_helix, arabinose operon control protein BA058_19340 SM00869 Autotransporter beta-domain BA058_19350 SM00421 helix_turn_helix, Lux Regulon BA058_19390 SM00052 Putative diguanylate phosphodiesterase BA058_19390 SM00421 helix_turn_helix, Lux Regulon BA058_19405 SM00248 ankyrin repeats BA058_19440 SM00829 Enoylreductase BA058_19460 SM00382 ATPases associated with a variety of cellular activities BA058_19505 SM01266 BA058_19505 BA058_19515 SM01038 Beta galactosidase small chain BA058_19535 SM00829 Enoylreductase BA058_19565 SM00062 Bacterial periplasmic substrate-binding proteins BA058_19570 SM00382 ATPases associated with a variety of cellular activities BA058_19585 SM01004 Delta-aminolevulinic acid dehydratase BA058_19590 SM00869 Autotransporter beta-domain BA058_19640 SM00098 Alkaline phosphatase homologues BA058_19650 SM00267 diguanylate cyclase BA058_19720 SM00448 cheY-homologous receiver domain BA058_19720 SM00862 Transcriptional regulatory protein, C terminal BA058_19725 SM00091 PAS domain BA058_19725 SM00387 Histidine kinase-like ATPases BA058_19725 SM00388 His Kinase A (phosphoacceptor) domain BA058_19740 SM00642 Alpha-amylase domain BA058_19760 SM01323 BA058_19760 BA058_19775 SM00507 HNH nucleases BA058_19825 SM00861 Transketolase, pyrimidine binding domain BA058_19840 SM00981 BA058_19840 BA058_19920 SM00382 ATPases associated with a variety of cellular activities BA058_19920 SM00994 ClpX C4-type zinc finger BA058_19920 SM01086 C-terminal, D2-small domain, of ClpB protein BA058_19925 SM00382 ATPases associated with a variety of cellular activities BA058_19925 SM00464 Found in ATP-dependent protease La (LON) BA058_19930 SM00411 bacterial (prokaryotic) histone like domain BA058_19940 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BA058_19965 SM00344 helix_turn_helix ASNC type BA058_19970 SM00382 ATPases associated with a variety of cellular activities BA058_19975 SM00382 ATPases associated with a variety of cellular activities BA058_19980 SM00938 Nitrogen regulatory protein P-II BA058_20015 SM00052 Putative diguanylate phosphodiesterase BA058_20025 SM01266 BA058_20025 BA058_20085 SM00382 ATPases associated with a variety of cellular activities BA058_20095 SM00493 BA058_20095 BA058_20100 SM00387 Histidine kinase-like ATPases BA058_20165 SM00530 Helix-turn-helix XRE-family like proteins BA058_20185 SM00422 helix_turn_helix, mercury resistance BA058_20200 SM00244 prohibitin homologues BA058_20205 SM00382 ATPases associated with a variety of cellular activities BA058_20220 SM00822 BA058_20220 BA058_20230 SM00382 ATPases associated with a variety of cellular activities BA058_20240 SM00450 Rhodanese Homology Domain BA058_20255 SM00346 helix_turn_helix isocitrate lyase regulation BA058_20335 SM01001 AIR carboxylase BA058_20355 SM00840 BA058_20355 BA058_20415 SM00028 Tetratricopeptide repeats BA058_20425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_20425 SM00387 Histidine kinase-like ATPases BA058_20425 SM00388 His Kinase A (phosphoacceptor) domain BA058_20430 SM00448 cheY-homologous receiver domain BA058_20430 SM00862 Transcriptional regulatory protein, C terminal BA058_20510 SM00923 MbtH-like protein BA058_20515 SM00823 Phosphopantetheine attachment site BA058_20515 SM00824 Thioesterase BA058_20525 SM00382 ATPases associated with a variety of cellular activities BA058_20565 SM00822 BA058_20565 BA058_20595 SM00470 ParB-like nuclease domain BA058_20670 SM00764 Citrate lyase ligase C-terminal domain BA058_20675 SM00091 PAS domain BA058_20675 SM00387 Histidine kinase-like ATPases BA058_20680 SM00448 cheY-homologous receiver domain BA058_20695 SM00357 Cold shock protein domain BA058_20715 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_20740 SM00936 Penicillin-binding protein 5, C-terminal domain BA058_20770 SM00855 Phosphoglycerate mutase family BA058_20805 SM00382 ATPases associated with a variety of cellular activities BA058_20820 SM00062 Bacterial periplasmic substrate-binding proteins BA058_20835 SM00116 Domain in cystathionine beta-synthase and other proteins. BA058_20835 SM01091 Transporter associated domain BA058_20850 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_20945 SM01130 BA058_20945 BA058_20965 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_20965 SM01134 BA058_20965 BA058_21040 SM00448 cheY-homologous receiver domain BA058_21040 SM00862 Transcriptional regulatory protein, C terminal BA058_21045 SM00387 Histidine kinase-like ATPases BA058_21045 SM00388 His Kinase A (phosphoacceptor) domain BA058_21095 SM00796 Allophanate hydrolase subunit 1 BA058_21100 SM00797 Allophanate hydrolase subunit 2 BA058_21110 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BA058_21110 SM01232 BA058_21110 BA058_21160 SM00861 Transketolase, pyrimidine binding domain BA058_21175 SM00881 CoA binding domain BA058_21180 SM00028 Tetratricopeptide repeats BA058_21310 SM00855 Phosphoglycerate mutase family BA058_21335 SM00382 ATPases associated with a variety of cellular activities BA058_21365 SM00382 ATPases associated with a variety of cellular activities BA058_21420 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_21420 SM00876 Biotin and Thiamin Synthesis associated domain BA058_21440 SM00487 DEAD-like helicases superfamily BA058_21440 SM00490 helicase superfamily c-terminal domain BA058_21450 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_21455 SM00852 Probable molybdopterin binding domain BA058_21490 SM00155 Phospholipase D. Active site motifs. BA058_21515 SM00382 ATPases associated with a variety of cellular activities BA058_21530 SM00487 DEAD-like helicases superfamily BA058_21530 SM00490 helicase superfamily c-terminal domain BA058_21540 SM00487 DEAD-like helicases superfamily BA058_21540 SM00488 BA058_21540 BA058_21540 SM00491 BA058_21540 BA058_21565 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BA058_21590 SM00382 ATPases associated with a variety of cellular activities BA058_21600 SM00062 Bacterial periplasmic substrate-binding proteins BA058_21600 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BA058_21635 SM00529 Helix-turn-helix diphteria tox regulatory element BA058_21650 SM00382 ATPases associated with a variety of cellular activities BA058_21680 SM00852 Probable molybdopterin binding domain BA058_21690 SM00382 ATPases associated with a variety of cellular activities BA058_21710 SM00052 Putative diguanylate phosphodiesterase BA058_21715 SM00267 diguanylate cyclase BA058_21720 SM00729 Elongator protein 3, MiaB family, Radical SAM BA058_21740 SM00936 Penicillin-binding protein 5, C-terminal domain BA058_21745 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_21745 SM01134 BA058_21745 BA058_21750 SM00014 Acid phosphatase homologues BA058_21825 SM00382 ATPases associated with a variety of cellular activities BA058_21850 SM00062 Bacterial periplasmic substrate-binding proteins BA058_21850 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BA058_21865 SM00062 Bacterial periplasmic substrate-binding proteins BA058_21865 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BA058_21870 SM00382 ATPases associated with a variety of cellular activities BA058_21885 SM00644 BA058_21885 BA058_21950 SM00382 ATPases associated with a variety of cellular activities BA058_21955 SM00357 Cold shock protein domain BA058_21995 SM00885 D5 N terminal like BA058_22035 SM00382 ATPases associated with a variety of cellular activities BA058_22035 SM01086 C-terminal, D2-small domain, of ClpB protein BA058_22045 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_22055 SM00382 ATPases associated with a variety of cellular activities BA058_22060 SM00382 ATPases associated with a variety of cellular activities BA058_22070 SM00344 helix_turn_helix ASNC type BA058_22075 SM00843 BA058_22075 BA058_22085 SM00382 ATPases associated with a variety of cellular activities BA058_22095 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_22165 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_22170 SM00411 bacterial (prokaryotic) histone like domain BA058_22175 SM00849 Metallo-beta-lactamase superfamily BA058_22180 SM00382 ATPases associated with a variety of cellular activities BA058_22245 SM00849 Metallo-beta-lactamase superfamily BA058_22280 SM00382 ATPases associated with a variety of cellular activities BA058_22295 SM00062 Bacterial periplasmic substrate-binding proteins BA058_22320 SM00981 BA058_22320 BA058_22325 SM00382 ATPases associated with a variety of cellular activities BA058_22400 SM00851 MGS-like domain BA058_22415 SM00881 CoA binding domain BA058_22420 SM00992 Hemimethylated DNA-binding protein YccV like BA058_22425 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BA058_22500 SM00357 Cold shock protein domain BA058_22505 SM00357 Cold shock protein domain BA058_22525 SM00073 Histidine Phosphotransfer domain BA058_22525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_22525 SM00387 Histidine kinase-like ATPases BA058_22525 SM00388 His Kinase A (phosphoacceptor) domain BA058_22525 SM00448 cheY-homologous receiver domain BA058_22535 SM00448 cheY-homologous receiver domain BA058_22535 SM00862 Transcriptional regulatory protein, C terminal BA058_22560 SM00271 DnaJ molecular chaperone homology domain BA058_22595 SM00903 Flavin reductase like domain BA058_22680 SM00028 Tetratricopeptide repeats BA058_22685 SM00267 diguanylate cyclase BA058_22705 SM00481 DNA polymerase alpha chain like domain BA058_22735 SM00421 helix_turn_helix, Lux Regulon BA058_22765 SM00506 Appr-1"-p processing enzyme BA058_22770 SM00155 Phospholipase D. Active site motifs. BA058_22825 SM00450 Rhodanese Homology Domain BA058_22830 SM00867 YceI-like domain BA058_22910 SM00858 BA058_22910 BA058_22955 SM00047 Lysozyme subfamily 2 BA058_22970 SM00316 Ribosomal protein S1-like RNA-binding domain BA058_22980 SM00363 S4 RNA-binding domain BA058_23010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BA058_23015 SM00822 BA058_23015 BA058_23025 SM00825 Beta-ketoacyl synthase BA058_23115 SM00257 Lysin motif BA058_23120 SM00487 DEAD-like helicases superfamily BA058_23120 SM00490 helicase superfamily c-terminal domain BA058_23120 SM00982 BA058_23120 BA058_23120 SM01058 CarD-like/TRCF domain BA058_23135 SM00382 ATPases associated with a variety of cellular activities BA058_23180 SM00382 ATPases associated with a variety of cellular activities BA058_23195 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BA058_23200 SM00387 Histidine kinase-like ATPases BA058_23205 SM00448 cheY-homologous receiver domain BA058_23205 SM00862 Transcriptional regulatory protein, C terminal BA058_23235 SM01329 BA058_23235 BA058_23300 SM01022 BA058_23300 BA058_23310 SM00530 Helix-turn-helix XRE-family like proteins BA058_23475 SM00635 Bacterial Ig-like domain 2 BA058_23505 SM00232 JAB/MPN domain BA058_23555 SM00382 ATPases associated with a variety of cellular activities BA058_23575 SM00422 helix_turn_helix, mercury resistance BA058_23580 SM00052 Putative diguanylate phosphodiesterase BA058_23580 SM01034 Sensors of blue-light using FAD BA058_23605 SM00052 Putative diguanylate phosphodiesterase BA058_23715 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_23730 SM01005 Alanine racemase, C-terminal domain BA058_23735 SM01091 Transporter associated domain BA058_23775 SM00382 ATPases associated with a variety of cellular activities BA058_23800 SM01120 BA058_23800 BA058_23810 SM00091 PAS domain BA058_23810 SM00382 ATPases associated with a variety of cellular activities BA058_23840 SM01400 BA058_23840 BA058_23860 SM00937 BA058_23860 BA058_23915 SM00421 helix_turn_helix, Lux Regulon BA058_23915 SM00448 cheY-homologous receiver domain BA058_23920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_23920 SM00387 Histidine kinase-like ATPases BA058_23935 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_23990 SM00448 cheY-homologous receiver domain BA058_24000 SM00528 Domain in histone-like proteins of HNS family BA058_24045 SM00382 ATPases associated with a variety of cellular activities BA058_24050 SM00382 ATPases associated with a variety of cellular activities BA058_24060 SM00155 Phospholipase D. Active site motifs. BA058_24145 SM00481 DNA polymerase alpha chain like domain BA058_24160 SM00363 S4 RNA-binding domain BA058_24180 SM00822 BA058_24180 BA058_24205 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BA058_24205 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BA058_24205 SM00493 BA058_24205 BA058_24240 SM00014 Acid phosphatase homologues BA058_24250 SM00028 Tetratricopeptide repeats BA058_24255 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BA058_24270 SM00420 helix_turn_helix, Deoxyribose operon repressor BA058_24270 SM01134 BA058_24270 BA058_24280 SM00052 Putative diguanylate phosphodiesterase BA058_24280 SM00091 PAS domain BA058_24280 SM00267 diguanylate cyclase BA058_24290 SM00357 Cold shock protein domain BA058_24290 SM00955 BA058_24290 BA058_24330 SM00382 ATPases associated with a variety of cellular activities BA058_24335 SM00382 ATPases associated with a variety of cellular activities BA058_24365 SM00382 ATPases associated with a variety of cellular activities BA058_24390 SM00450 Rhodanese Homology Domain BA058_24395 SM00642 Alpha-amylase domain BA058_24450 SM00354 helix_turn _helix lactose operon repressor BA058_24465 SM00091 PAS domain BA058_24465 SM00382 ATPases associated with a variety of cellular activities BA058_24475 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BA058_24525 SM00100 Cyclic nucleotide-monophosphate binding domain BA058_24525 SM00419 helix_turn_helix, cAMP Regulatory protein BA058_24545 SM00342 helix_turn_helix, arabinose operon control protein BA058_24560 SM00463 Small MutS-related domain BA058_24565 SM00091 PAS domain BA058_24565 SM00267 diguanylate cyclase BA058_24580 SM00487 DEAD-like helicases superfamily BA058_24580 SM00490 helicase superfamily c-terminal domain BA058_24615 SM00890 Domain of unknown function BA058_24685 SM00382 ATPases associated with a variety of cellular activities BA058_24685 SM00487 DEAD-like helicases superfamily BA058_24685 SM00490 helicase superfamily c-terminal domain BA058_24685 SM00847 Helicase associated domain (HA2) Add an annotation BA058_24700 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BA058_24725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BA058_24725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BA058_24725 SM00319 Homologues of the ligand binding domain of Tar BA058_24785 SM00530 Helix-turn-helix XRE-family like proteins BA058_24805 SM00345 helix_turn_helix gluconate operon transcriptional repressor BA058_24815 SM00382 ATPases associated with a variety of cellular activities BA058_24900 SM01351 BA058_24900 BA058_24925 SM00903 Flavin reductase like domain BA058_24955 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_24970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BA058_24990 SM00530 Helix-turn-helix XRE-family like proteins BA058_25000 SM00829 Enoylreductase BA058_25005 SM00919 Malic enzyme, NAD binding domain BA058_25005 SM01274 BA058_25005 BA058_25025 SM00052 Putative diguanylate phosphodiesterase BA058_25025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BA058_25025 SM00091 PAS domain BA058_25025 SM00267 diguanylate cyclase BA058_25080 SM00342 helix_turn_helix, arabinose operon control protein