locus-tag class description HVW55_00005 PF00308 Bacterial dnaA protein HVW55_00005 PF11638 DnaA N-terminal domain HVW55_00005 PF08299 Bacterial dnaA protein helix-turn-helix HVW55_00010 PF02767 DNA polymerase III beta subunit, central domain HVW55_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HVW55_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HVW55_00015 PF02463 RecF/RecN/SMC N terminal domain HVW55_00020 PF01751 Toprim domain HVW55_00020 PF00204 DNA gyrase B HVW55_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HVW55_00020 PF18053 DNA gyrase B subunit insert domain HVW55_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_00025 PF06078 Bacterial protein of unknown function (DUF937) HVW55_00040 PF01494 FAD binding domain HVW55_00045 PF12566 Protein of unknown function (DUF3748) HVW55_00045 PF07676 WD40-like Beta Propeller Repeat HVW55_00050 PF07119 Protein of unknown function (DUF1375) HVW55_00055 PF00011 Hsp20/alpha crystallin family HVW55_00060 PF00011 Hsp20/alpha crystallin family HVW55_00065 PF02080 TrkA-C domain HVW55_00065 PF06826 Predicted Permease Membrane Region HVW55_00070 PF07702 UTRA domain HVW55_00070 PF00392 Bacterial regulatory proteins, gntR family HVW55_00075 PF00367 phosphotransferase system, EIIB HVW55_00075 PF02378 Phosphotransferase system, EIIC HVW55_00080 PF11975 Family 4 glycosyl hydrolase C-terminal domain HVW55_00080 PF02056 Family 4 glycosyl hydrolase HVW55_00085 PF12833 Helix-turn-helix domain HVW55_00085 PF02311 AraC-like ligand binding domain HVW55_00090 PF00474 Sodium:solute symporter family HVW55_00095 PF00884 Sulfatase HVW55_00095 PF16347 Domain of unknown function (DUF4976) HVW55_00105 PF02656 Domain of unknown function (DUF202) HVW55_00110 PF02656 Domain of unknown function (DUF202) HVW55_00120 PF07690 Major Facilitator Superfamily HVW55_00125 PF13939 Toxin TisB, type I toxin-antitoxin system HVW55_00130 PF08049 IlvB leader peptide HVW55_00135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_00135 PF00205 Thiamine pyrophosphate enzyme, central domain HVW55_00135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_00140 PF01842 ACT domain HVW55_00155 PF00072 Response regulator receiver domain HVW55_00155 PF00196 Bacterial regulatory proteins, luxR family HVW55_00160 PF07730 Histidine kinase HVW55_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_00160 PF05231 MASE1 HVW55_00165 PF07690 Major Facilitator Superfamily HVW55_00170 PF07690 Major Facilitator Superfamily HVW55_00175 PF06711 Protein of unknown function (DUF1198) HVW55_00185 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HVW55_00190 PF00232 Glycosyl hydrolase family 1 HVW55_00195 PF02378 Phosphotransferase system, EIIC HVW55_00200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_00205 PF00356 Bacterial regulatory proteins, lacI family HVW55_00215 PF01979 Amidohydrolase family HVW55_00215 PF13382 Adenine deaminase C-terminal domain HVW55_00220 PF00860 Permease family HVW55_00225 PF06711 Protein of unknown function (DUF1198) HVW55_00245 PF11924 Inverse autotransporter, beta-domain HVW55_00245 PF02369 Bacterial Ig-like domain (group 1) HVW55_00245 PF09134 Invasin, domain 3 HVW55_00250 PF00486 Transcriptional regulatory protein, C terminal HVW55_00255 PF06511 Type III secretion systems tip complex components HVW55_00275 PF07720 Tetratricopeptide repeat HVW55_00285 PF03180 NLPA lipoprotein HVW55_00290 PF00892 EamA-like transporter family HVW55_00295 PF07690 Major Facilitator Superfamily HVW55_00310 PF17345 Family of unknown function (DUF5375) HVW55_00355 PF13356 Arm DNA-binding domain HVW55_00355 PF00589 Phage integrase family HVW55_00355 PF14659 Phage integrase, N-terminal SAM-like domain HVW55_00370 PF01055 Glycosyl hydrolases family 31 HVW55_00370 PF13802 Galactose mutarotase-like HVW55_00375 PF05170 AsmA family HVW55_00380 PF00860 Permease family HVW55_00385 PF03616 Sodium/glutamate symporter HVW55_00390 PF17191 RecG wedge domain HVW55_00390 PF00270 DEAD/DEAH box helicase HVW55_00390 PF00271 Helicase conserved C-terminal domain HVW55_00395 PF00588 SpoU rRNA Methylase family HVW55_00395 PF12105 SpoU, rRNA methylase, C-terminal HVW55_00400 PF02824 TGS domain HVW55_00400 PF13291 ACT domain HVW55_00400 PF04607 Region found in RelA / SpoT proteins HVW55_00405 PF01192 RNA polymerase Rpb6 HVW55_00410 PF00625 Guanylate kinase HVW55_00415 PF03120 NAD-dependent DNA ligase OB-fold domain HVW55_00415 PF01653 NAD-dependent DNA ligase adenylation domain HVW55_00420 PF03458 UPF0126 domain HVW55_00430 PF08340 Domain of unknown function (DUF1732) HVW55_00430 PF03755 YicC-like family, N-terminal region HVW55_00435 PF01138 3' exoribonuclease family, domain 1 HVW55_00435 PF03725 3' exoribonuclease family, domain 2 HVW55_00440 PF00156 Phosphoribosyl transferase domain HVW55_00445 PF00440 Bacterial regulatory proteins, tetR family HVW55_00450 PF00692 dUTPase HVW55_00455 PF04127 DNA / pantothenate metabolism flavoprotein HVW55_00455 PF02441 Flavoprotein HVW55_00460 PF04002 RadC-like JAB domain HVW55_00465 PF00830 Ribosomal L28 family HVW55_00470 PF00471 Ribosomal protein L33 HVW55_00475 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HVW55_00475 PF06827 Zinc finger found in FPG and IleRS HVW55_00475 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HVW55_00480 PF01467 Cytidylyltransferase-like HVW55_00485 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HVW55_00490 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HVW55_00495 PF00534 Glycosyl transferases group 1 HVW55_00495 PF13439 Glycosyltransferase Family 4 HVW55_00510 PF13439 Glycosyltransferase Family 4 HVW55_00510 PF00534 Glycosyl transferases group 1 HVW55_00515 PF01501 Glycosyl transferase family 8 HVW55_00515 PF08437 Glycosyl transferase family 8 C-terminal HVW55_00520 PF01501 Glycosyl transferase family 8 HVW55_00520 PF08437 Glycosyl transferase family 8 C-terminal HVW55_00525 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) HVW55_00535 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HVW55_00540 PF04932 O-Antigen ligase HVW55_00545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HVW55_00550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HVW55_00555 PF01370 NAD dependent epimerase/dehydratase family HVW55_00560 PF00155 Aminotransferase class I and II HVW55_00565 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_00565 PF00107 Zinc-binding dehydrogenase HVW55_00570 PF00535 Glycosyl transferase family 2 HVW55_00575 PF04748 Divergent polysaccharide deacetylase HVW55_00580 PF01551 Peptidase family M23 HVW55_00585 PF01676 Metalloenzyme superfamily HVW55_00585 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HVW55_00590 PF00581 Rhodanese-like domain HVW55_00595 PF00462 Glutaredoxin HVW55_00600 PF02556 Preprotein translocase subunit SecB HVW55_00605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HVW55_00605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HVW55_00610 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_00610 PF06426 Serine acetyltransferase, N-terminal HVW55_00615 PF00588 SpoU rRNA Methylase family HVW55_00620 PF01070 FMN-dependent dehydrogenase HVW55_00625 PF00392 Bacterial regulatory proteins, gntR family HVW55_00625 PF07729 FCD domain HVW55_00630 PF02652 L-lactate permease HVW55_00635 PF05658 Head domain of trimeric autotransporter adhesin HVW55_00635 PF03895 YadA-like membrane anchor domain HVW55_00635 PF13018 Extended Signal Peptide of Type V secretion system HVW55_00635 PF05662 Coiled stalk of trimeric autotransporter adhesin HVW55_00640 PF11622 Protein of unknown function (DUF3251) HVW55_00645 PF10928 Protein of unknown function (DUF2810) HVW55_00655 PF05068 Mannitol repressor HVW55_00660 PF01232 Mannitol dehydrogenase Rossmann domain HVW55_00660 PF08125 Mannitol dehydrogenase C-terminal domain HVW55_00665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_00665 PF02378 Phosphotransferase system, EIIC HVW55_00665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_00670 PF11742 Protein of unknown function (DUF3302) HVW55_00675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_00675 PF00529 HlyD membrane-fusion protein of T1SS HVW55_00680 PF00043 Glutathione S-transferase, C-terminal domain HVW55_00680 PF13417 Glutathione S-transferase, N-terminal domain HVW55_00685 PF03841 L-seryl-tRNA selenium transferase HVW55_00685 PF12390 Selenocysteine synthase N terminal HVW55_00690 PF09106 Elongation factor SelB, winged helix HVW55_00690 PF03144 Elongation factor Tu domain 2 HVW55_00690 PF00009 Elongation factor Tu GTP binding domain HVW55_00690 PF09107 Elongation factor SelB, winged helix HVW55_00695 PF00465 Iron-containing alcohol dehydrogenase HVW55_00700 PF00171 Aldehyde dehydrogenase family HVW55_00710 PF11742 Protein of unknown function (DUF3302) HVW55_00715 PF00529 HlyD membrane-fusion protein of T1SS HVW55_00715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_00720 PF03466 LysR substrate binding domain HVW55_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_00725 PF06629 MltA-interacting protein MipA HVW55_00730 PF07944 Beta-L-arabinofuranosidase, GH127 HVW55_00745 PF09339 IclR helix-turn-helix domain HVW55_00745 PF01614 Bacterial transcriptional regulator HVW55_00750 PF13247 4Fe-4S dicluster domain HVW55_00755 PF00155 Aminotransferase class I and II HVW55_00760 PF00128 Alpha amylase, catalytic domain HVW55_00765 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HVW55_00770 PF12833 Helix-turn-helix domain HVW55_00775 PF02653 Branched-chain amino acid transport system / permease component HVW55_00780 PF00005 ABC transporter HVW55_00785 PF13407 Periplasmic binding protein domain HVW55_00795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_00795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HVW55_00800 PF05360 yiaA/B two helix domain HVW55_00810 PF01757 Acyltransferase family HVW55_00815 PF13983 YsaB-like lipoprotein HVW55_00820 PF02091 Glycyl-tRNA synthetase alpha subunit HVW55_00825 PF02092 Glycyl-tRNA synthetase beta subunit HVW55_00825 PF05746 DALR anticodon binding domain HVW55_00830 PF01848 Hok/gef family HVW55_00835 PF00313 'Cold-shock' DNA-binding domain HVW55_00840 PF01381 Helix-turn-helix HVW55_00845 PF11254 Protein of unknown function (DUF3053) HVW55_00850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HVW55_00850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HVW55_00855 PF00691 OmpA family HVW55_00855 PF13488 Glycine zipper HVW55_00860 PF01568 Molydopterin dinucleotide binding domain HVW55_00860 PF18364 Molybdopterin oxidoreductase N-terminal domain HVW55_00860 PF00384 Molybdopterin oxidoreductase HVW55_00865 PF00583 Acetyltransferase (GNAT) family HVW55_00870 PF03352 Methyladenine glycosylase HVW55_00875 PF03797 Autotransporter beta-domain HVW55_00880 PF07690 Major Facilitator Superfamily HVW55_00885 PF00419 Fimbrial protein HVW55_00890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_00890 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_00895 PF00577 Outer membrane usher protein HVW55_00895 PF13954 PapC N-terminal domain HVW55_00895 PF13953 PapC C-terminal domain HVW55_00900 PF00419 Fimbrial protein HVW55_00905 PF00419 Fimbrial protein HVW55_00910 PF08019 Phosphoethanolamine transferase EptA/EptB HVW55_00910 PF00884 Sulfatase HVW55_00920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_00925 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_00930 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_00930 PF12911 N-terminal TM domain of oligopeptide transport permease C HVW55_00935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_00935 PF00005 ABC transporter HVW55_00940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_00940 PF00005 ABC transporter HVW55_00945 PF03222 Tryptophan/tyrosine permease family HVW55_00950 PF13940 Toxin Ldr, type I toxin-antitoxin system HVW55_00955 PF13940 Toxin Ldr, type I toxin-antitoxin system HVW55_00960 PF11658 Cellulose biosynthesis protein BcsG HVW55_00965 PF11120 Cellulose biosynthesis protein BcsF HVW55_00970 PF10995 Cellulose biosynthesis GIL HVW55_00975 PF10945 Cellulose biosynthesis protein BcsR HVW55_00980 PF06564 Cellulose biosynthesis protein BcsQ HVW55_00985 PF00535 Glycosyl transferase family 2 HVW55_00985 PF07238 PilZ domain HVW55_00985 PF03552 Cellulose synthase HVW55_00990 PF03170 Bacterial cellulose synthase subunit HVW55_00995 PF01270 Glycosyl hydrolases family 8 HVW55_01000 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HVW55_01005 PF00990 Diguanylate cyclase, GGDEF domain HVW55_01005 PF00563 EAL domain HVW55_01005 PF17154 Gammaproteobacterial periplasmic sensor domain HVW55_01005 PF00672 HAMP domain HVW55_01010 PF00375 Sodium:dicarboxylate symporter family HVW55_01015 PF00675 Insulinase (Peptidase family M16) HVW55_01015 PF05193 Peptidase M16 inactive domain HVW55_01020 PF00294 pfkB family carbohydrate kinase HVW55_01025 PF00563 EAL domain HVW55_01030 PF05170 AsmA family HVW55_01035 PF07690 Major Facilitator Superfamily HVW55_01035 PF00083 Sugar (and other) transporter HVW55_01040 PF03631 Virulence factor BrkB HVW55_01045 PF03466 LysR substrate binding domain HVW55_01045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_01050 PF00196 Bacterial regulatory proteins, luxR family HVW55_01055 PF01204 Trehalase HVW55_01060 PF14376 Haem-binding domain HVW55_01060 PF00034 Cytochrome c HVW55_01060 PF03150 Di-haem cytochrome c peroxidase HVW55_01065 PF00282 Pyridoxal-dependent decarboxylase conserved domain HVW55_01070 PF12833 Helix-turn-helix domain HVW55_01075 PF12833 Helix-turn-helix domain HVW55_01080 PF00873 AcrB/AcrD/AcrF family HVW55_01085 PF00529 HlyD membrane-fusion protein of T1SS HVW55_01085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_01095 PF00196 Bacterial regulatory proteins, luxR family HVW55_01100 PF03729 Short repeat of unknown function (DUF308) HVW55_01105 PF06411 HdeA/HdeB family HVW55_01110 PF06411 HdeA/HdeB family HVW55_01115 PF02308 MgtC family HVW55_01120 PF00005 ABC transporter HVW55_01125 PF01032 FecCD transport family HVW55_01135 PF06228 Haem utilisation ChuX/HutX HVW55_01140 PF04055 Radical SAM superfamily HVW55_01145 PF01497 Periplasmic binding protein HVW55_01155 PF07715 TonB-dependent Receptor Plug Domain HVW55_01155 PF00593 TonB dependent receptor HVW55_01160 PF05171 Haemin-degrading HemS.ChuX domain HVW55_01165 PF00196 Bacterial regulatory proteins, luxR family HVW55_01170 PF03843 Outer membrane lipoprotein Slp family HVW55_01180 PF03960 ArsC family HVW55_01195 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_01195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HVW55_01200 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HVW55_01205 PF01432 Peptidase family M3 HVW55_01210 PF04445 Putative SAM-dependent methyltransferase HVW55_01215 PF00854 POT family HVW55_01220 PF00582 Universal stress protein family HVW55_01225 PF10625 Universal stress protein B (UspB) HVW55_01230 PF01384 Phosphate transporter family HVW55_01240 PF10951 Protein of unknown function (DUF2776) HVW55_01245 PF13258 Domain of unknown function (DUF4049) HVW55_01250 PF13258 Domain of unknown function (DUF4049) HVW55_01255 PF13533 Biotin-lipoyl like HVW55_01260 PF00005 ABC transporter HVW55_01280 PF01116 Fructose-bisphosphate aldolase class-II HVW55_01285 PF00381 PTS HPr component phosphorylation site HVW55_01295 PF03611 PTS system sugar-specific permease component HVW55_01300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_01310 PF00392 Bacterial regulatory proteins, gntR family HVW55_01310 PF07702 UTRA domain HVW55_01315 PF01402 Ribbon-helix-helix protein, copG family HVW55_01315 PF08753 NikR C terminal nickel binding domain HVW55_01320 PF00005 ABC transporter HVW55_01325 PF00005 ABC transporter HVW55_01330 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_01335 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_01340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_01345 PF01648 4'-phosphopantetheinyl transferase superfamily HVW55_01350 PF00109 Beta-ketoacyl synthase, N-terminal domain HVW55_01350 PF02801 Beta-ketoacyl synthase, C-terminal domain HVW55_01365 PF00109 Beta-ketoacyl synthase, N-terminal domain HVW55_01365 PF02801 Beta-ketoacyl synthase, C-terminal domain HVW55_01390 PF00535 Glycosyl transferase family 2 HVW55_01400 PF00668 Condensation domain HVW55_01400 PF00975 Thioesterase domain HVW55_01400 PF00550 Phosphopantetheine attachment site HVW55_01400 PF00501 AMP-binding enzyme HVW55_01400 PF13193 AMP-binding enzyme C-terminal domain HVW55_01410 PF00550 Phosphopantetheine attachment site HVW55_01415 PF00550 Phosphopantetheine attachment site HVW55_01420 PF01553 Acyltransferase HVW55_01430 PF00891 O-methyltransferase domain HVW55_01440 PF01594 AI-2E family transporter HVW55_01445 PF07690 Major Facilitator Superfamily HVW55_01450 PF08786 DcrB HVW55_01455 PF02592 Putative vitamin uptake transporter HVW55_01460 PF01206 Sulfurtransferase TusA HVW55_01470 PF00403 Heavy-metal-associated domain HVW55_01475 PF07947 YhhN family HVW55_01480 PF10694 Protein of unknown function (DUF2500) HVW55_01485 PF06611 Protein of unknown function (DUF1145) HVW55_01495 PF02881 SRP54-type protein, helical bundle domain HVW55_01495 PF00448 SRP54-type protein, GTPase domain HVW55_01500 PF00005 ABC transporter HVW55_01505 PF02687 FtsX-like permease family HVW55_01505 PF18075 FtsX extracellular domain HVW55_01510 PF04545 Sigma-70, region 4 HVW55_01510 PF04542 Sigma-70 region 2 HVW55_01515 PF13458 Periplasmic binding protein HVW55_01530 PF12568 Acetyltransferase (GNAT) domain, PanZ HVW55_01535 PF13458 Periplasmic binding protein HVW55_01540 PF02653 Branched-chain amino acid transport system / permease component HVW55_01545 PF11862 Domain of unknown function (DUF3382) HVW55_01545 PF02653 Branched-chain amino acid transport system / permease component HVW55_01550 PF12399 Branched-chain amino acid ATP-binding cassette transporter HVW55_01550 PF00005 ABC transporter HVW55_01555 PF00005 ABC transporter HVW55_01565 PF13416 Bacterial extracellular solute-binding protein HVW55_01570 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_01575 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_01580 PF00005 ABC transporter HVW55_01580 PF17912 MalK OB fold domain HVW55_01585 PF03009 Glycerophosphoryl diester phosphodiesterase family HVW55_01590 PF10956 Protein of unknown function (DUF2756) HVW55_01600 PF15567 Immunity protein 35 HVW55_01615 PF05638 Type VI secretion system effector, Hcp HVW55_01620 PF00583 Acetyltransferase (GNAT) family HVW55_01625 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HVW55_01625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HVW55_01630 PF17954 Quercetinase C-terminal cupin domain HVW55_01630 PF02678 Pirin HVW55_01635 PF00356 Bacterial regulatory proteins, lacI family HVW55_01635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_01640 PF01202 Shikimate kinase HVW55_01645 PF02447 GntP family permease HVW55_01650 PF00570 HRDC domain HVW55_01650 PF00270 DEAD/DEAH box helicase HVW55_01650 PF09382 RQC domain HVW55_01650 PF16124 RecQ zinc-binding HVW55_01650 PF00271 Helicase conserved C-terminal domain HVW55_01660 PF01914 MarC family integral membrane protein HVW55_01665 PF02774 Semialdehyde dehydrogenase, dimerisation domain HVW55_01665 PF01118 Semialdehyde dehydrogenase, NAD binding domain HVW55_01670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HVW55_01670 PF02806 Alpha amylase, C-terminal all-beta domain HVW55_01670 PF00128 Alpha amylase, catalytic domain HVW55_01675 PF00128 Alpha amylase, catalytic domain HVW55_01675 PF18390 Glycogen debranching enzyme C-terminal domain HVW55_01675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HVW55_01680 PF00483 Nucleotidyl transferase HVW55_01685 PF08323 Starch synthase catalytic domain HVW55_01685 PF00534 Glycosyl transferases group 1 HVW55_01690 PF00343 Carbohydrate phosphorylase HVW55_01705 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HVW55_01705 PF01266 FAD dependent oxidoreductase HVW55_01710 PF00581 Rhodanese-like domain HVW55_01715 PF01694 Rhomboid family HVW55_01715 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HVW55_01720 PF00455 DeoR C terminal sensor domain HVW55_01720 PF08220 DeoR-like helix-turn-helix domain HVW55_01725 PF00158 Sigma-54 interaction domain HVW55_01725 PF06956 Regulator of RNA terminal phosphate cyclase HVW55_01730 PF01139 tRNA-splicing ligase RtcB HVW55_01735 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain HVW55_01735 PF01137 RNA 3'-terminal phosphate cyclase HVW55_01750 PF17874 MalT-like TPR region HVW55_01750 PF00196 Bacterial regulatory proteins, luxR family HVW55_01755 PF00343 Carbohydrate phosphorylase HVW55_01760 PF02446 4-alpha-glucanotransferase HVW55_01765 PF02447 GntP family permease HVW55_01770 PF01106 NifU-like domain HVW55_01770 PF01521 Iron-sulphur cluster biosynthesis HVW55_01775 PF00156 Phosphoribosyl transferase domain HVW55_01780 PF00561 alpha/beta hydrolase fold HVW55_01795 PF04754 Putative transposase, YhgA-like HVW55_01800 PF09012 FeoC like transcriptional regulator HVW55_01805 PF07664 Ferrous iron transport protein B C terminus HVW55_01805 PF17910 FeoB cytosolic helical domain HVW55_01805 PF07670 Nucleoside recognition HVW55_01805 PF02421 Ferrous iron transport protein B HVW55_01810 PF04023 FeoA domain HVW55_01815 PF17674 HHH domain HVW55_01815 PF00575 S1 RNA binding domain HVW55_01815 PF09371 Tex-like protein N-terminal domain HVW55_01815 PF16921 Tex protein YqgF-like domain HVW55_01820 PF01272 Transcription elongation factor, GreA/GreB, C-term HVW55_01820 PF03449 Transcription elongation factor, N-terminal HVW55_01825 PF00486 Transcriptional regulatory protein, C terminal HVW55_01825 PF00072 Response regulator receiver domain HVW55_01830 PF00672 HAMP domain HVW55_01830 PF00512 His Kinase A (phospho-acceptor) domain HVW55_01830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_01835 PF01293 Phosphoenolpyruvate carboxykinase HVW55_01840 PF13687 Domain of unknown function (DUF4153) HVW55_01845 PF01430 Hsp33 protein HVW55_01850 PF01479 S4 domain HVW55_01855 PF13419 Haloacid dehalogenase-like hydrolase HVW55_01860 PF07095 Intracellular growth attenuator protein IgaA HVW55_01865 PF00293 NUDIX domain HVW55_01870 PF17092 Penicillin-binding protein OB-like domain HVW55_01870 PF00905 Penicillin binding protein transpeptidase domain HVW55_01870 PF00912 Transglycosylase HVW55_01880 PF05137 Fimbrial assembly protein (PilN) HVW55_01890 PF10748 DNA utilization proteins HofP HVW55_01895 PF03958 Bacterial type II/III secretion system short domain HVW55_01895 PF00263 Bacterial type II and III secretion system protein HVW55_01900 PF01202 Shikimate kinase HVW55_01905 PF01761 3-dehydroquinate synthase HVW55_01910 PF05036 Sporulation related domain HVW55_01915 PF02086 D12 class N6 adenine-specific DNA methyltransferase HVW55_01920 PF00834 Ribulose-phosphate 3 epimerase family HVW55_01925 PF13419 Haloacid dehalogenase-like hydrolase HVW55_01930 PF00579 tRNA synthetases class I (W and Y) HVW55_01935 PF14502 Helix-turn-helix domain HVW55_01935 PF14503 YhfZ C-terminal domain HVW55_01945 PF01168 Alanine racemase, N-terminal domain HVW55_01950 PF01676 Metalloenzyme superfamily HVW55_01955 PF02126 Phosphotriesterase family HVW55_01960 PF10941 Protein of unknown function DUF2620 HVW55_01965 PF10797 Protein of unknown function HVW55_01970 PF00155 Aminotransferase class I and II HVW55_01975 PF13978 Protein of unknown function (DUF4223) HVW55_01980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HVW55_01980 PF14824 Sirohaem biosynthesis protein central HVW55_01980 PF10414 Sirohaem synthase dimerisation region HVW55_01985 PF01226 Formate/nitrite transporter HVW55_01990 PF13806 Rieske-like [2Fe-2S] domain HVW55_01995 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HVW55_01995 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HVW55_01995 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_01995 PF18267 Rubredoxin NAD+ reductase C-terminal domain HVW55_01995 PF04324 BFD-like [2Fe-2S] binding domain HVW55_02000 PF07690 Major Facilitator Superfamily HVW55_02005 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HVW55_02010 PF10832 Protein of unknown function (DUF2559) HVW55_02015 PF02661 Fic/DOC family HVW55_02020 PF00117 Glutamine amidotransferase class-I HVW55_02025 PF00202 Aminotransferase class-III HVW55_02030 PF12805 FUSC-like inner membrane protein yccS HVW55_02035 PF13545 Crp-like helix-turn-helix domain HVW55_02035 PF00027 Cyclic nucleotide-binding domain HVW55_02040 PF02566 OsmC-like protein HVW55_02045 PF00485 Phosphoribulokinase / Uridine kinase family HVW55_02050 PF06794 Uncharacterised protein family (UPF0270) HVW55_02055 PF00561 alpha/beta hydrolase fold HVW55_02060 PF00005 ABC transporter HVW55_02060 PF12848 ABC transporter HVW55_02065 PF02525 Flavodoxin-like fold HVW55_02070 PF02254 TrkA-N domain HVW55_02070 PF00999 Sodium/hydrogen exchanger family HVW55_02075 PF09526 Probable metal-binding protein (DUF2387) HVW55_02080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HVW55_02085 PF04102 SlyX HVW55_02090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HVW55_02090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HVW55_02095 PF13309 HTH domain HVW55_02095 PF08348 YheO-like PAS domain HVW55_02100 PF02635 DsrE/DsrF-like family HVW55_02105 PF02635 DsrE/DsrF-like family HVW55_02110 PF04077 DsrH like protein HVW55_02115 PF00164 Ribosomal protein S12/S23 HVW55_02120 PF00177 Ribosomal protein S7p/S5e HVW55_02125 PF03144 Elongation factor Tu domain 2 HVW55_02125 PF00679 Elongation factor G C-terminus HVW55_02125 PF14492 Elongation Factor G, domain II HVW55_02125 PF03764 Elongation factor G, domain IV HVW55_02125 PF00009 Elongation factor Tu GTP binding domain HVW55_02130 PF00009 Elongation factor Tu GTP binding domain HVW55_02130 PF03143 Elongation factor Tu C-terminal domain HVW55_02130 PF03144 Elongation factor Tu domain 2 HVW55_02135 PF04324 BFD-like [2Fe-2S] binding domain HVW55_02140 PF00210 Ferritin-like domain HVW55_02145 PF01478 Type IV leader peptidase family HVW55_02150 PF00338 Ribosomal protein S10p/S20e HVW55_02155 PF00297 Ribosomal protein L3 HVW55_02160 PF00573 Ribosomal protein L4/L1 family HVW55_02165 PF00276 Ribosomal protein L23 HVW55_02170 PF00181 Ribosomal Proteins L2, RNA binding domain HVW55_02170 PF03947 Ribosomal Proteins L2, C-terminal domain HVW55_02175 PF00203 Ribosomal protein S19 HVW55_02180 PF00237 Ribosomal protein L22p/L17e HVW55_02185 PF07650 KH domain HVW55_02185 PF00189 Ribosomal protein S3, C-terminal domain HVW55_02190 PF00252 Ribosomal protein L16p/L10e HVW55_02195 PF00831 Ribosomal L29 protein HVW55_02200 PF00366 Ribosomal protein S17 HVW55_02205 PF00238 Ribosomal protein L14p/L23e HVW55_02210 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HVW55_02210 PF00467 KOW motif HVW55_02215 PF00673 ribosomal L5P family C-terminus HVW55_02215 PF00281 Ribosomal protein L5 HVW55_02220 PF00253 Ribosomal protein S14p/S29e HVW55_02225 PF00410 Ribosomal protein S8 HVW55_02230 PF00347 Ribosomal protein L6 HVW55_02235 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HVW55_02240 PF00333 Ribosomal protein S5, N-terminal domain HVW55_02240 PF03719 Ribosomal protein S5, C-terminal domain HVW55_02245 PF00327 Ribosomal protein L30p/L7e HVW55_02250 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HVW55_02255 PF00344 SecY translocase HVW55_02260 PF00444 Ribosomal protein L36 HVW55_02265 PF00416 Ribosomal protein S13/S18 HVW55_02270 PF00411 Ribosomal protein S11 HVW55_02275 PF00163 Ribosomal protein S4/S9 N-terminal domain HVW55_02275 PF01479 S4 domain HVW55_02280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HVW55_02280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HVW55_02280 PF01000 RNA polymerase Rpb3/RpoA insert domain HVW55_02285 PF01196 Ribosomal protein L17 HVW55_02290 PF09350 Domain of unknown function (DUF1992) HVW55_02295 PF13411 MerR HTH family regulatory protein HVW55_02300 PF03889 Alternative ribosome-rescue factor A HVW55_02305 PF01741 Large-conductance mechanosensitive channel, MscL HVW55_02310 PF02254 TrkA-N domain HVW55_02310 PF02080 TrkA-C domain HVW55_02315 PF01029 NusB family HVW55_02315 PF01189 16S rRNA methyltransferase RsmB/F HVW55_02320 PF02911 Formyl transferase, C-terminal domain HVW55_02320 PF00551 Formyl transferase HVW55_02325 PF01327 Polypeptide deformylase HVW55_02330 PF17782 DprA winged helix domain HVW55_02330 PF02481 DNA recombination-mediator protein A HVW55_02335 PF04361 Protein of unknown function (DUF494) HVW55_02340 PF01396 Topoisomerase DNA binding C4 zinc finger HVW55_02345 PF01300 Telomere recombination HVW55_02350 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HVW55_02350 PF01488 Shikimate / quinate 5-dehydrogenase HVW55_02350 PF08501 Shikimate dehydrogenase substrate binding domain HVW55_02355 PF07369 Protein of unknown function (DUF1488) HVW55_02360 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_02400 PF00005 ABC transporter HVW55_02405 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_02410 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_02415 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_02425 PF00873 AcrB/AcrD/AcrF family HVW55_02430 PF00529 HlyD membrane-fusion protein of T1SS HVW55_02430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_02435 PF08361 MAATS-type transcriptional repressor, C-terminal region HVW55_02435 PF00440 Bacterial regulatory proteins, tetR family HVW55_02440 PF10831 Protein of unknown function (DUF2556) HVW55_02445 PF01555 DNA methylase HVW55_02450 PF02954 Bacterial regulatory protein, Fis family HVW55_02455 PF01207 Dihydrouridine synthase (Dus) HVW55_02465 PF00474 Sodium:solute symporter family HVW55_02470 PF06196 Protein of unknown function (DUF997) HVW55_02475 PF02785 Biotin carboxylase C-terminal domain HVW55_02475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HVW55_02475 PF00289 Biotin carboxylase, N-terminal domain HVW55_02480 PF00364 Biotin-requiring enzyme HVW55_02490 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_02490 PF00107 Zinc-binding dehydrogenase HVW55_02495 PF00990 Diguanylate cyclase, GGDEF domain HVW55_02495 PF17157 Gammaproteobacterial periplasmic sensor domain HVW55_02495 PF00563 EAL domain HVW55_02505 PF04085 rod shape-determining protein MreC HVW55_02510 PF04093 rod shape-determining protein MreD HVW55_02515 PF02545 Maf-like protein HVW55_02520 PF00575 S1 RNA binding domain HVW55_02520 PF10150 Ribonuclease E/G family HVW55_02525 PF13116 Protein of unknown function HVW55_02525 PF13502 AsmA-like C-terminal region HVW55_02530 PF01523 Putative modulator of DNA gyrase HVW55_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_02535 PF03466 LysR substrate binding domain HVW55_02540 PF07869 Protein of unknown function (DUF1656) HVW55_02545 PF13533 Biotin-lipoyl like HVW55_02550 PF04632 Fusaric acid resistance protein family HVW55_02555 PF01337 Barstar (barnase inhibitor) HVW55_02560 PF07338 Protein of unknown function (DUF1471) HVW55_02565 PF02863 Arginine repressor, C-terminal domain HVW55_02565 PF01316 Arginine repressor, DNA binding domain HVW55_02570 PF00056 lactate/malate dehydrogenase, NAD binding domain HVW55_02570 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HVW55_02575 PF13180 PDZ domain HVW55_02580 PF13180 PDZ domain HVW55_02580 PF00595 PDZ domain HVW55_02585 PF06295 Protein of unknown function (DUF1043) HVW55_02590 PF03969 AFG1-like ATPase HVW55_02595 PF00572 Ribosomal protein L13 HVW55_02600 PF00380 Ribosomal protein S9/S16 HVW55_02605 PF02798 Glutathione S-transferase, N-terminal domain HVW55_02605 PF00043 Glutathione S-transferase, C-terminal domain HVW55_02610 PF04386 Stringent starvation protein B HVW55_02615 PF03606 C4-dicarboxylate anaerobic carrier HVW55_02620 PF00392 Bacterial regulatory proteins, gntR family HVW55_02620 PF07729 FCD domain HVW55_02625 PF00701 Dihydrodipicolinate synthetase family HVW55_02630 PF07690 Major Facilitator Superfamily HVW55_02635 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HVW55_02640 PF00480 ROK family HVW55_02645 PF04074 YhcH/YjgK/YiaL HVW55_02650 PF06250 YhcG PDDEXK nuclease domain HVW55_02650 PF17761 DUF1016 N-terminal domain HVW55_02655 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HVW55_02655 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_02660 PF01493 GXGXG motif HVW55_02660 PF00310 Glutamine amidotransferases class-II HVW55_02660 PF04898 Glutamate synthase central domain HVW55_02660 PF01645 Conserved region in glutamate synthase HVW55_02665 PF04055 Radical SAM superfamily HVW55_02665 PF16199 Radical_SAM C-terminal domain HVW55_02670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_02670 PF18415 Histidine kinase receptor ArcB trans-membrane domain HVW55_02670 PF00072 Response regulator receiver domain HVW55_02670 PF00512 His Kinase A (phospho-acceptor) domain HVW55_02670 PF00989 PAS fold HVW55_02670 PF01627 Hpt domain HVW55_02680 PF00912 Transglycosylase HVW55_02685 PF10707 PhoP regulatory network protein YrbL HVW55_02690 PF00381 PTS HPr component phosphorylation site HVW55_02695 PF03668 P-loop ATPase protein family HVW55_02700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_02705 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HVW55_02710 PF04963 Sigma-54 factor, core binding domain HVW55_02710 PF04552 Sigma-54, DNA binding domain HVW55_02710 PF00309 Sigma-54 factor, Activator interacting domain (AID) HVW55_02715 PF00005 ABC transporter HVW55_02715 PF12399 Branched-chain amino acid ATP-binding cassette transporter HVW55_02720 PF03968 OstA-like protein HVW55_02725 PF06835 Lipopolysaccharide-assembly, LptC-related HVW55_02735 PF00571 CBS domain HVW55_02735 PF01380 SIS domain HVW55_02740 PF01699 Sodium/calcium exchanger protein HVW55_02745 PF00005 ABC transporter HVW55_02750 PF02405 Permease MlaE HVW55_02755 PF02470 MlaD protein HVW55_02760 PF05494 MlaC protein HVW55_02765 PF13466 STAS domain HVW55_02770 PF01722 BolA-like protein HVW55_02775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HVW55_02780 PF13693 Winged helix-turn-helix DNA-binding HVW55_02785 PF00348 Polyprenyl synthetase HVW55_02790 PF00829 Ribosomal prokaryotic L21 protein HVW55_02795 PF01016 Ribosomal L27 protein HVW55_02800 PF00892 EamA-like transporter family HVW55_02805 PF01018 GTP1/OBG HVW55_02805 PF01926 50S ribosome-binding GTPase HVW55_02810 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HVW55_02815 PF01272 Transcription elongation factor, GreA/GreB, C-term HVW55_02815 PF03449 Transcription elongation factor, N-terminal HVW55_02820 PF01985 CRS1 / YhbY (CRM) domain HVW55_02825 PF01728 FtsJ-like methyltransferase HVW55_02830 PF06480 FtsH Extracellular HVW55_02830 PF01434 Peptidase family M41 HVW55_02830 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_02830 PF17862 AAA+ lid domain HVW55_02835 PF00809 Pterin binding enzyme HVW55_02840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HVW55_02840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HVW55_02840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HVW55_02840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HVW55_02845 PF03840 Preprotein translocase SecG subunit HVW55_02855 PF00884 Sulfatase HVW55_02860 PF00764 Arginosuccinate synthase HVW55_02870 PF17384 RimP C-terminal SH3 domain HVW55_02870 PF02576 RimP N-terminal domain HVW55_02875 PF00575 S1 RNA binding domain HVW55_02875 PF13184 NusA-like KH domain HVW55_02875 PF08529 NusA N-terminal domain HVW55_02880 PF04760 Translation initiation factor IF-2, N-terminal region HVW55_02880 PF00009 Elongation factor Tu GTP binding domain HVW55_02880 PF08364 Bacterial translation initiation factor IF-2 associated region HVW55_02880 PF11987 Translation-initiation factor 2 HVW55_02885 PF02033 Ribosome-binding factor A HVW55_02890 PF09157 Pseudouridine synthase II TruB, C-terminal HVW55_02890 PF16198 tRNA pseudouridylate synthase B C-terminal domain HVW55_02890 PF01509 TruB family pseudouridylate synthase (N terminal domain) HVW55_02895 PF00312 Ribosomal protein S15 HVW55_02900 PF01138 3' exoribonuclease family, domain 1 HVW55_02900 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HVW55_02900 PF03725 3' exoribonuclease family, domain 2 HVW55_02900 PF00575 S1 RNA binding domain HVW55_02900 PF00013 KH domain HVW55_02905 PF07719 Tetratricopeptide repeat HVW55_02905 PF13181 Tetratricopeptide repeat HVW55_02915 PF00271 Helicase conserved C-terminal domain HVW55_02915 PF12343 Cold shock protein DEAD box A HVW55_02915 PF00270 DEAD/DEAH box helicase HVW55_02915 PF03880 DbpA RNA binding domain HVW55_02920 PF03222 Tryptophan/tyrosine permease family HVW55_02925 PF00296 Luciferase-like monooxygenase HVW55_02930 PF01136 Peptidase family U32 HVW55_02935 PF01136 Peptidase family U32 HVW55_02940 PF02036 SCP-2 sterol transfer family HVW55_02945 PF13508 Acetyltransferase (GNAT) domain HVW55_02950 PF01541 GIY-YIG catalytic domain HVW55_02960 PF01965 DJ-1/PfpI family HVW55_02965 PF13460 NAD(P)H-binding HVW55_02970 PF03773 Predicted permease HVW55_02975 PF04972 BON domain HVW55_02980 PF13580 SIS domain HVW55_02985 PF02021 Uncharacterised protein family UPF0102 HVW55_02990 PF04348 LppC putative lipoprotein HVW55_02995 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HVW55_03005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_03005 PF03466 LysR substrate binding domain HVW55_03015 PF00155 Aminotransferase class I and II HVW55_03020 PF00367 phosphotransferase system, EIIB HVW55_03020 PF02378 Phosphotransferase system, EIIC HVW55_03025 PF01116 Fructose-bisphosphate aldolase class-II HVW55_03030 PF01380 SIS domain HVW55_03035 PF01979 Amidohydrolase family HVW55_03040 PF03610 PTS system fructose IIA component HVW55_03055 PF13693 Winged helix-turn-helix DNA-binding HVW55_03060 PF02914 Bacteriophage Mu transposase HVW55_03060 PF02316 Mu DNA-binding domain HVW55_03060 PF09299 Mu transposase, C-terminal HVW55_03060 PF09039 Mu DNA binding, I gamma subdomain HVW55_03065 PF09077 Mu B transposition protein, C terminal HVW55_03065 PF13401 AAA domain HVW55_03090 PF07352 Bacteriophage Mu Gam like protein HVW55_03140 PF08765 Mor transcription activator family HVW55_03165 PF08461 Ribonuclease R winged-helix domain HVW55_03170 PF11985 Protein of unknown function (DUF3486) HVW55_03175 PF03237 Terminase-like family HVW55_03180 PF06074 Protein of unknown function (DUF935) HVW55_03185 PF04233 Phage Mu protein F like protein HVW55_03190 PF05069 Phage virion morphogenesis family HVW55_03195 PF10123 Mu-like prophage I protein HVW55_03200 PF10124 Mu-like prophage major head subunit gpT HVW55_03225 PF04984 Phage tail sheath protein subtilisin-like domain HVW55_03225 PF17482 Phage tail sheath C-terminal domain HVW55_03235 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 HVW55_03245 PF07157 DNA circularisation protein N-terminus HVW55_03255 PF06890 Bacteriophage Mu Gp45 protein HVW55_03260 PF07409 Phage protein GP46 HVW55_03265 PF04865 Baseplate J-like protein HVW55_03280 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_03290 PF00239 Resolvase, N terminal domain HVW55_03290 PF02796 Helix-turn-helix domain of resolvase HVW55_03295 PF10122 Mu-like prophage protein Com HVW55_03310 PF03609 PTS system sorbose-specific iic component HVW55_03315 PF03830 PTS system sorbose subfamily IIB component HVW55_03320 PF08013 Tagatose 6 phosphate kinase HVW55_03325 PF08220 DeoR-like helix-turn-helix domain HVW55_03325 PF00455 DeoR C terminal sensor domain HVW55_03330 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system HVW55_03335 PF15937 prlF antitoxin for toxin YhaV_toxin HVW55_03340 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HVW55_03340 PF08666 SAF domain HVW55_03345 PF07690 Major Facilitator Superfamily HVW55_03350 PF03328 HpcH/HpaI aldolase/citrate lyase family HVW55_03355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HVW55_03355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HVW55_03360 PF02595 Glycerate kinase family HVW55_03385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_03385 PF03466 LysR substrate binding domain HVW55_03390 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_03395 PF03222 Tryptophan/tyrosine permease family HVW55_03400 PF00871 Acetokinase family HVW55_03405 PF01228 Glycine radical HVW55_03405 PF02901 Pyruvate formate lyase-like HVW55_03410 PF01042 Endoribonuclease L-PSP HVW55_03415 PF03315 Serine dehydratase beta chain HVW55_03415 PF03313 Serine dehydratase alpha chain HVW55_03425 PF03313 Serine dehydratase alpha chain HVW55_03435 PF02678 Pirin HVW55_03435 PF17954 Quercetinase C-terminal cupin domain HVW55_03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_03440 PF03466 LysR substrate binding domain HVW55_03445 PF05656 Protein of unknown function (DUF805) HVW55_03450 PF05656 Protein of unknown function (DUF805) HVW55_03455 PF13409 Glutathione S-transferase, N-terminal domain HVW55_03460 PF07681 DoxX HVW55_03465 PF13997 YqjK-like protein HVW55_03470 PF07332 Putative Actinobacterial Holin-X, holin superfamily III HVW55_03475 PF05957 Bacterial protein of unknown function (DUF883) HVW55_03480 PF06476 Protein of unknown function (DUF1090) HVW55_03485 PF13721 SecD export protein N-terminal TM region HVW55_03490 PF09335 SNARE associated Golgi protein HVW55_03495 PF07729 FCD domain HVW55_03495 PF00392 Bacterial regulatory proteins, gntR family HVW55_03500 PF07690 Major Facilitator Superfamily HVW55_03505 PF02614 Glucuronate isomerase HVW55_03510 PF08666 SAF domain HVW55_03510 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HVW55_03515 PF10688 Bacterial inner membrane protein HVW55_03520 PF00375 Sodium:dicarboxylate symporter family HVW55_03525 PF03741 Integral membrane protein TerC family HVW55_03530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HVW55_03535 PF02698 DUF218 domain HVW55_03540 PF01863 Protein of unknown function DUF45 HVW55_03545 PF05175 Methyltransferase small domain HVW55_03550 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system HVW55_03555 PF01381 Helix-turn-helix HVW55_03560 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_03560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HVW55_03565 PF01204 Trehalase HVW55_03575 PF13520 Amino acid permease HVW55_03580 PF04074 YhcH/YjgK/YiaL HVW55_03585 PF00703 Glycosyl hydrolases family 2 HVW55_03585 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HVW55_03585 PF02837 Glycosyl hydrolases family 2, sugar binding domain HVW55_03585 PF02929 Beta galactosidase small chain HVW55_03585 PF16353 Domain of unknown function(DUF4981) HVW55_03590 PF00356 Bacterial regulatory proteins, lacI family HVW55_03595 PF01588 Putative tRNA binding domain HVW55_03600 PF00202 Aminotransferase class-III HVW55_03605 PF08447 PAS fold HVW55_03605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HVW55_03610 PF03551 Transcriptional regulator PadR-like family HVW55_03615 PF08021 Siderophore-interacting FAD-binding domain HVW55_03615 PF04954 Siderophore-interacting protein HVW55_03625 PF03167 Uracil DNA glycosylase superfamily HVW55_03630 PF04546 Sigma-70, non-essential region HVW55_03630 PF00140 Sigma-70 factor, region 1.2 HVW55_03630 PF04542 Sigma-70 region 2 HVW55_03630 PF04539 Sigma-70 region 3 HVW55_03630 PF03979 Sigma-70 factor, region 1.1 HVW55_03630 PF04545 Sigma-70, region 4 HVW55_03635 PF08278 DNA primase DnaG DnaB-binding HVW55_03635 PF08275 DNA primase catalytic core, N-terminal domain HVW55_03635 PF10410 DnaB-helicase binding domain of primase HVW55_03635 PF01807 CHC2 zinc finger HVW55_03640 PF01165 Ribosomal protein S21 HVW55_03645 PF00814 Glycoprotease family HVW55_03650 PF00939 Sodium:sulfate symporter transmembrane region HVW55_03655 PF05683 Fumarase C-terminus HVW55_03660 PF05681 Fumarate hydratase (Fumerase) HVW55_03665 PF03466 LysR substrate binding domain HVW55_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_03670 PF02660 Glycerol-3-phosphate acyltransferase HVW55_03675 PF02152 Dihydroneopterin aldolase HVW55_03680 PF02673 Bacitracin resistance protein BacA HVW55_03685 PF01743 Poly A polymerase head domain HVW55_03685 PF01966 HD domain HVW55_03685 PF12627 Probable RNA and SrmB- binding site of polymerase A HVW55_03690 PF08239 Bacterial SH3 domain HVW55_03695 PF01928 CYTH domain HVW55_03700 PF08335 GlnD PII-uridylyltransferase HVW55_03700 PF03710 Glutamate-ammonia ligase adenylyltransferase HVW55_03705 PF00294 pfkB family carbohydrate kinase HVW55_03705 PF01467 Cytidylyltransferase-like HVW55_03725 PF07290 Protein of unknown function (DUF1449) HVW55_03730 PF08971 Glycogen synthesis protein HVW55_03735 PF04380 Membrane fusogenic activity HVW55_03740 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HVW55_03750 PF02535 ZIP Zinc transporter HVW55_03755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HVW55_03760 PF03738 Glutathionylspermidine synthase preATP-grasp HVW55_03765 PF06693 Protein of unknown function (DUF1190) HVW55_03770 PF02321 Outer membrane efflux protein HVW55_03775 PF00293 NUDIX domain HVW55_03780 PF06853 Protein of unknown function (DUF1249) HVW55_03785 PF00149 Calcineurin-like phosphoesterase HVW55_03790 PF05728 Uncharacterised protein family (UPF0227) HVW55_03795 PF00986 DNA gyrase B subunit, carboxyl terminus HVW55_03795 PF00204 DNA gyrase B HVW55_03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_03795 PF01751 Toprim domain HVW55_03800 PF07715 TonB-dependent Receptor Plug Domain HVW55_03805 PF00005 ABC transporter HVW55_03810 PF01032 FecCD transport family HVW55_03815 PF01032 FecCD transport family HVW55_03825 PF01418 Helix-turn-helix domain, rpiR family HVW55_03825 PF01380 SIS domain HVW55_03830 PF03992 Antibiotic biosynthesis monooxygenase HVW55_03835 PF02525 Flavodoxin-like fold HVW55_03840 PF08521 Two-component sensor kinase N-terminal HVW55_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_03840 PF00512 His Kinase A (phospho-acceptor) domain HVW55_03845 PF00486 Transcriptional regulatory protein, C terminal HVW55_03845 PF00072 Response regulator receiver domain HVW55_03850 PF04076 Bacterial OB fold (BOF) protein HVW55_03855 PF06445 GyrI-like small molecule binding domain HVW55_03860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_03865 PF00521 DNA gyrase/topoisomerase IV, subunit A HVW55_03865 PF03989 DNA gyrase C-terminal domain, beta-propeller HVW55_03870 PF01553 Acyltransferase HVW55_03875 PF07731 Multicopper oxidase HVW55_03875 PF00394 Multicopper oxidase HVW55_03875 PF07732 Multicopper oxidase HVW55_03880 PF11842 Domain of unknown function (DUF3362) HVW55_03880 PF04055 Radical SAM superfamily HVW55_03880 PF08497 Radical SAM N-terminal HVW55_03885 PF04728 Lipoprotein leucine-zipper HVW55_03890 PF12883 Protein of unknown function (DUF3828) HVW55_03895 PF00248 Aldo/keto reductase family HVW55_03900 PF00465 Iron-containing alcohol dehydrogenase HVW55_03905 PF06719 AraC-type transcriptional regulator N-terminus HVW55_03905 PF12833 Helix-turn-helix domain HVW55_03910 PF09335 SNARE associated Golgi protein HVW55_03915 PF01053 Cys/Met metabolism PLP-dependent enzyme HVW55_03920 PF01618 MotA/TolQ/ExbB proton channel family HVW55_03925 PF02472 Biopolymer transport protein ExbD/TolR HVW55_03935 PF03350 Uncharacterized protein family, UPF0114 HVW55_03940 PF00248 Aldo/keto reductase family HVW55_03945 PF01738 Dienelactone hydrolase family HVW55_03950 PF11115 Protein of unknown function (DUF2623) HVW55_03955 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HVW55_03955 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HVW55_03960 PF13247 4Fe-4S dicluster domain HVW55_03965 PF03916 Polysulphide reductase, NrfD HVW55_03970 PF00374 Nickel-dependent hydrogenase HVW55_03975 PF01750 Hydrogenase maturation protease HVW55_03980 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HVW55_03985 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HVW55_03990 PF01455 HupF/HypC family HVW55_03995 PF02798 Glutathione S-transferase, N-terminal domain HVW55_04000 PF05257 CHAP domain HVW55_04000 PF03738 Glutathionylspermidine synthase preATP-grasp HVW55_04005 PF01384 Phosphate transporter family HVW55_04025 PF01943 Polysaccharide biosynthesis protein HVW55_04035 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HVW55_04040 PF03739 Lipopolysaccharide export system permease LptF/LptG HVW55_04050 PF00155 Aminotransferase class I and II HVW55_04055 PF00550 Phosphopantetheine attachment site HVW55_04065 PF00501 AMP-binding enzyme HVW55_04065 PF14535 AMP-binding enzyme C-terminal domain HVW55_04075 PF07729 FCD domain HVW55_04075 PF00392 Bacterial regulatory proteins, gntR family HVW55_04080 PF01565 FAD binding domain HVW55_04080 PF02913 FAD linked oxidases, C-terminal domain HVW55_04085 PF01565 FAD binding domain HVW55_04090 PF02754 Cysteine-rich domain HVW55_04090 PF13183 4Fe-4S dicluster domain HVW55_04095 PF03928 Haem-degrading HVW55_04100 PF01274 Malate synthase HVW55_04105 PF02652 L-lactate permease HVW55_04110 PF13402 Peptidase M60, enhancin and enhancin-like HVW55_04110 PF17291 N-terminal domain of M60-like peptidases HVW55_04110 PF13322 Domain of unknown function (DUF4092) HVW55_04115 PF06750 Bacterial Peptidase A24 N-terminal domain HVW55_04115 PF01478 Type IV leader peptidase family HVW55_04120 PF16549 Type II secretion system (T2SS) pilotin, S protein HVW55_04125 PF11356 Type II secretion system protein C HVW55_04130 PF03958 Bacterial type II/III secretion system short domain HVW55_04130 PF00263 Bacterial type II and III secretion system protein HVW55_04135 PF00437 Type II/IV secretion system protein HVW55_04140 PF00482 Type II secretion system (T2SS), protein F HVW55_04145 PF08334 Type II secretion system (T2SS), protein G HVW55_04145 PF07963 Prokaryotic N-terminal methylation motif HVW55_04150 PF07963 Prokaryotic N-terminal methylation motif HVW55_04155 PF02501 Type II secretion system (T2SS), protein I HVW55_04155 PF07963 Prokaryotic N-terminal methylation motif HVW55_04160 PF11612 Type II secretion system (T2SS), protein J HVW55_04160 PF07963 Prokaryotic N-terminal methylation motif HVW55_04165 PF03934 Type II secretion system (T2SS), protein K HVW55_04170 PF12693 GspL periplasmic domain HVW55_04175 PF04612 Type II secretion system (T2SS), protein M HVW55_04195 PF06755 CbtA_toxin of type IV toxin-antitoxin system HVW55_04200 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A HVW55_04205 PF06174 Protein of unknown function (DUF987) HVW55_04210 PF04002 RadC-like JAB domain HVW55_04215 PF03230 Antirestriction protein HVW55_04225 PF06067 Domain of unknown function (DUF932) HVW55_04230 PF06006 Bacterial protein of unknown function (DUF905) HVW55_04245 PF03797 Autotransporter beta-domain HVW55_04245 PF13018 Extended Signal Peptide of Type V secretion system HVW55_04245 PF16168 Adhesin of bacterial autotransporter system, probable stalk HVW55_04330 PF04754 Putative transposase, YhgA-like HVW55_04345 PF17287 POTRA domain HVW55_04345 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HVW55_04345 PF08479 POTRA domain, ShlB-type HVW55_04350 PF04829 Pre-toxin domain with VENN motif HVW55_04350 PF05860 haemagglutination activity domain HVW55_04350 PF13332 Hemagglutinin repeat HVW55_04350 PF15605 Bacterial toxin 28 HVW55_04375 PF18616 CDI immunity proteins HVW55_04380 PF00665 Integrase core domain HVW55_04385 PF01695 IstB-like ATP binding protein HVW55_04395 PF13005 zinc-finger binding domain of transposase IS66 HVW55_04395 PF13007 Transposase C of IS166 homeodomain HVW55_04395 PF03050 Transposase IS66 family HVW55_04395 PF13817 IS66 C-terminal element HVW55_04400 PF05717 IS66 Orf2 like protein HVW55_04405 PF00665 Integrase core domain HVW55_04405 PF13276 HTH-like domain HVW55_04405 PF01527 Transposase HVW55_04410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HVW55_04425 PF02863 Arginine repressor, C-terminal domain HVW55_04425 PF01316 Arginine repressor, DNA binding domain HVW55_04430 PF03606 C4-dicarboxylate anaerobic carrier HVW55_04435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HVW55_04435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HVW55_04440 PF00696 Amino acid kinase family HVW55_04450 PF13332 Hemagglutinin repeat HVW55_04450 PF05860 haemagglutination activity domain HVW55_04450 PF04829 Pre-toxin domain with VENN motif HVW55_04450 PF05594 Haemagluttinin repeat HVW55_04480 PF00271 Helicase conserved C-terminal domain HVW55_04480 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HVW55_04480 PF04851 Type III restriction enzyme, res subunit HVW55_04480 PF08463 EcoEI R protein C-terminal HVW55_04485 PF02384 N-6 DNA Methylase HVW55_04485 PF12161 HsdM N-terminal domain HVW55_04490 PF01420 Type I restriction modification DNA specificity domain HVW55_04495 PF02463 RecF/RecN/SMC N terminal domain HVW55_04505 PF00589 Phage integrase family HVW55_04505 PF13356 Arm DNA-binding domain HVW55_04520 PF02371 Transposase IS116/IS110/IS902 family HVW55_04520 PF01548 Transposase HVW55_04525 PF00990 Diguanylate cyclase, GGDEF domain HVW55_04525 PF17158 Membrane-associated sensor, integral membrane domain HVW55_04535 PF12833 Helix-turn-helix domain HVW55_04540 PF14659 Phage integrase, N-terminal SAM-like domain HVW55_04540 PF13356 Arm DNA-binding domain HVW55_04540 PF00589 Phage integrase family HVW55_04545 PF13614 AAA domain HVW55_04575 PF03796 DnaB-like helicase C terminal domain HVW55_04575 PF00772 DnaB-like helicase N terminal domain HVW55_04620 PF06629 MltA-interacting protein MipA HVW55_04630 PF01751 Toprim domain HVW55_04630 PF01131 DNA topoisomerase HVW55_04645 PF00436 Single-strand binding protein family HVW55_04650 PF04754 Putative transposase, YhgA-like HVW55_04775 PF00665 Integrase core domain HVW55_04775 PF01527 Transposase HVW55_04775 PF13276 HTH-like domain HVW55_04780 PF05717 IS66 Orf2 like protein HVW55_04785 PF13817 IS66 C-terminal element HVW55_04785 PF13005 zinc-finger binding domain of transposase IS66 HVW55_04785 PF13007 Transposase C of IS166 homeodomain HVW55_04785 PF03050 Transposase IS66 family HVW55_04870 PF06924 Protein of unknown function (DUF1281) HVW55_04910 PF02086 D12 class N6 adenine-specific DNA methyltransferase HVW55_04920 PF02369 Bacterial Ig-like domain (group 1) HVW55_04920 PF07979 Intimin C-type lectin domain HVW55_04920 PF11924 Inverse autotransporter, beta-domain HVW55_04920 PF01476 LysM domain HVW55_04925 PF13361 UvrD-like helicase C-terminal domain HVW55_04925 PF00580 UvrD/REP helicase N-terminal domain HVW55_04925 PF12462 DNA helicase IV / RNA helicase N terminal HVW55_04935 PF00589 Phage integrase family HVW55_04945 PF04474 Protein of unknown function (DUF554) HVW55_04950 PF01276 Orn/Lys/Arg decarboxylase, major domain HVW55_04950 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HVW55_04950 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HVW55_04955 PF03825 Nucleoside H+ symporter HVW55_04960 PF01464 Transglycosylase SLT domain HVW55_04960 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HVW55_04965 PF04362 Bacterial Fe(2+) trafficking HVW55_04970 PF10576 Iron-sulfur binding domain of endonuclease III HVW55_04970 PF00730 HhH-GPD superfamily base excision DNA repair protein HVW55_04970 PF00633 Helix-hairpin-helix motif HVW55_04970 PF14815 NUDIX domain HVW55_04975 PF02390 Putative methyltransferase HVW55_04980 PF04320 Protein with unknown function (DUF469) HVW55_04990 PF11101 Protein of unknown function (DUF2884) HVW55_04995 PF00710 Asparaginase, N-terminal HVW55_04995 PF17763 Glutaminase/Asparaginase C-terminal domain HVW55_05000 PF06717 Protein of unknown function (DUF1202) HVW55_05005 PF06969 HemN C-terminal domain HVW55_05005 PF04055 Radical SAM superfamily HVW55_05010 PF01725 Ham1 family HVW55_05015 PF02594 Uncharacterised ACR, YggU family COG1872 HVW55_05020 PF02325 YGGT family HVW55_05025 PF01168 Alanine racemase, N-terminal domain HVW55_05030 PF00437 Type II/IV secretion system protein HVW55_05035 PF03652 Holliday junction resolvase HVW55_05040 PF02622 Uncharacterized ACR, COG1678 HVW55_05045 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HVW55_05045 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HVW55_05050 PF04452 RNA methyltransferase HVW55_05055 PF04231 Endonuclease I HVW55_05060 PF10263 SprT-like family HVW55_05060 PF17283 SprT-like zinc ribbon domain HVW55_05065 PF00083 Sugar (and other) transporter HVW55_05070 PF00438 S-adenosylmethionine synthetase, N-terminal domain HVW55_05070 PF02772 S-adenosylmethionine synthetase, central domain HVW55_05070 PF02773 S-adenosylmethionine synthetase, C-terminal domain HVW55_05075 PF17430 Uncharacterized YqgC-like HVW55_05080 PF11036 Virulence promoting factor HVW55_05085 PF17944 Arginine decarboxylase C-terminal helical extension HVW55_05085 PF17810 Arginine decarboxylase helical bundle domain HVW55_05085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HVW55_05095 PF00491 Arginase family HVW55_05100 PF01435 Peptidase family M48 HVW55_05105 PF02779 Transketolase, pyrimidine binding domain HVW55_05105 PF02780 Transketolase, C-terminal domain HVW55_05105 PF00456 Transketolase, thiamine diphosphate binding domain HVW55_05110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_05115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_05115 PF02378 Phosphotransferase system, EIIC HVW55_05120 PF00107 Zinc-binding dehydrogenase HVW55_05120 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_05125 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HVW55_05130 PF05068 Mannitol repressor HVW55_05140 PF00005 ABC transporter HVW55_05145 PF00005 ABC transporter HVW55_05165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HVW55_05165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HVW55_05170 PF00162 Phosphoglycerate kinase HVW55_05175 PF01116 Fructose-bisphosphate aldolase class-II HVW55_05180 PF05552 Conserved TM helix HVW55_05180 PF00924 Mechanosensitive ion channel HVW55_05195 PF01810 LysE type translocator HVW55_05200 PF04402 Protein of unknown function (DUF541) HVW55_05205 PF03466 LysR substrate binding domain HVW55_05205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_05210 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HVW55_05210 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HVW55_05215 PF00378 Enoyl-CoA hydratase/isomerase HVW55_05225 PF02310 B12 binding domain HVW55_05225 PF01642 Methylmalonyl-CoA mutase HVW55_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_05230 PF03466 LysR substrate binding domain HVW55_05235 PF00970 Oxidoreductase FAD-binding domain HVW55_05235 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_05235 PF00175 Oxidoreductase NAD-binding domain HVW55_05240 PF07338 Protein of unknown function (DUF1471) HVW55_05245 PF02525 Flavodoxin-like fold HVW55_05250 PF03466 LysR substrate binding domain HVW55_05255 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HVW55_05260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HVW55_05260 PF01842 ACT domain HVW55_05260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HVW55_05270 PF01812 5-formyltetrahydrofolate cyclo-ligase family HVW55_05280 PF05164 Cell division protein ZapA HVW55_05285 PF03695 Uncharacterised protein family (UPF0149) HVW55_05290 PF05195 Aminopeptidase P, N-terminal domain HVW55_05290 PF00557 Metallopeptidase family M24 HVW55_05295 PF01494 FAD binding domain HVW55_05300 PF01494 FAD binding domain HVW55_05310 PF08669 Glycine cleavage T-protein C-terminal barrel domain HVW55_05310 PF01571 Aminomethyltransferase folate-binding domain HVW55_05315 PF01597 Glycine cleavage H-protein HVW55_05320 PF02347 Glycine cleavage system P-protein HVW55_05325 PF00232 Glycosyl hydrolase family 1 HVW55_05335 PF03006 Haemolysin-III related HVW55_05340 PF01571 Aminomethyltransferase folate-binding domain HVW55_05345 PF03937 Flavinator of succinate dehydrogenase HVW55_05350 PF07254 Membrane-bound toxin component of toxin-antitoxin system HVW55_05355 PF00258 Flavodoxin HVW55_05360 PF00589 Phage integrase family HVW55_05360 PF02899 Phage integrase, N-terminal SAM-like domain HVW55_05365 PF13098 Thioredoxin-like domain HVW55_05365 PF10411 Disulfide bond isomerase protein N-terminus HVW55_05370 PF02272 DHHA1 domain HVW55_05370 PF17768 RecJ OB domain HVW55_05370 PF01368 DHH family HVW55_05380 PF01336 OB-fold nucleic acid binding domain HVW55_05380 PF00152 tRNA synthetases class II (D, K and N) HVW55_05385 PF00293 NUDIX domain HVW55_05400 PF00860 Permease family HVW55_05410 PF13247 4Fe-4S dicluster domain HVW55_05415 PF00860 Permease family HVW55_05420 PF01979 Amidohydrolase family HVW55_05425 PF00860 Permease family HVW55_05430 PF01799 [2Fe-2S] binding domain HVW55_05430 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HVW55_05430 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HVW55_05435 PF00941 FAD binding domain in molybdopterin dehydrogenase HVW55_05440 PF01979 Amidohydrolase family HVW55_05445 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_05445 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HVW55_05450 PF12804 MobA-like NTP transferase domain HVW55_05460 PF13478 XdhC Rossmann domain HVW55_05460 PF02625 XdhC and CoxI family HVW55_05465 PF00696 Amino acid kinase family HVW55_05470 PF01979 Amidohydrolase family HVW55_05475 PF01546 Peptidase family M20/M25/M40 HVW55_05475 PF07687 Peptidase dimerisation domain HVW55_05480 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_05485 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HVW55_05485 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HVW55_05495 PF01799 [2Fe-2S] binding domain HVW55_05495 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_05500 PF03450 CO dehydrogenase flavoprotein C-terminal domain HVW55_05500 PF00941 FAD binding domain in molybdopterin dehydrogenase HVW55_05505 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HVW55_05505 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HVW55_05510 PF01476 LysM domain HVW55_05510 PF01551 Peptidase family M23 HVW55_05530 PF12833 Helix-turn-helix domain HVW55_05535 PF03958 Bacterial type II/III secretion system short domain HVW55_05535 PF00263 Bacterial type II and III secretion system protein HVW55_05540 PF07201 HrpJ-like domain HVW55_05545 PF00771 FHIPEP family HVW55_05550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HVW55_05550 PF18269 T3SS EscN ATPase C-terminal domain HVW55_05550 PF02874 ATP synthase alpha/beta family, beta-barrel domain HVW55_05565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HVW55_05570 PF00813 FliP family HVW55_05575 PF01313 Bacterial export proteins, family 3 HVW55_05590 PF00486 Transcriptional regulatory protein, C terminal HVW55_05595 PF07720 Tetratricopeptide repeat HVW55_05620 PF00486 Transcriptional regulatory protein, C terminal HVW55_05625 PF00196 Bacterial regulatory proteins, luxR family HVW55_05630 PF03222 Tryptophan/tyrosine permease family HVW55_05635 PF00108 Thiolase, N-terminal domain HVW55_05635 PF02803 Thiolase, C-terminal domain HVW55_05640 PF04962 KduI/IolB family HVW55_05650 PF00083 Sugar (and other) transporter HVW55_05655 PF01177 Asp/Glu/Hydantoin racemase HVW55_05660 PF03466 LysR substrate binding domain HVW55_05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_05665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HVW55_05665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HVW55_05670 PF00356 Bacterial regulatory proteins, lacI family HVW55_05675 PF01553 Acyltransferase HVW55_05675 PF00501 AMP-binding enzyme HVW55_05680 PF07690 Major Facilitator Superfamily HVW55_05685 PF00248 Aldo/keto reductase family HVW55_05690 PF06004 Bacterial protein of unknown function (DUF903) HVW55_05695 PF03741 Integral membrane protein TerC family HVW55_05700 PF02976 DNA mismatch repair enzyme MutH HVW55_05705 PF00293 NUDIX domain HVW55_05710 PF00391 PEP-utilising enzyme, mobile domain HVW55_05710 PF05524 PEP-utilising enzyme, N-terminal HVW55_05710 PF02896 PEP-utilising enzyme, TIM barrel domain HVW55_05710 PF01590 GAF domain HVW55_05715 PF01790 Prolipoprotein diacylglyceryl transferase HVW55_05720 PF00303 Thymidylate synthase HVW55_05725 PF07963 Prokaryotic N-terminal methylation motif HVW55_05730 PF07963 Prokaryotic N-terminal methylation motif HVW55_05735 PF10713 Protein of unknown function (DUF2509) HVW55_05740 PF07963 Prokaryotic N-terminal methylation motif HVW55_05740 PF12528 Type II secretion prepilin peptidase dependent protein C HVW55_05745 PF17946 RecC C-terminal domain HVW55_05750 PF16187 Middle or third domain of peptidase_M16 HVW55_05750 PF05193 Peptidase M16 inactive domain HVW55_05750 PF00675 Insulinase (Peptidase family M16) HVW55_05755 PF12705 PD-(D/E)XK nuclease superfamily HVW55_05755 PF13361 UvrD-like helicase C-terminal domain HVW55_05755 PF00580 UvrD/REP helicase N-terminal domain HVW55_05760 PF13538 UvrD-like helicase C-terminal domain HVW55_05765 PF00583 Acetyltransferase (GNAT) family HVW55_05765 PF00696 Amino acid kinase family HVW55_05770 PF01520 N-acetylmuramoyl-L-alanine amidase HVW55_05770 PF11741 AMIN domain HVW55_05790 PF06725 3D domain HVW55_05790 PF03562 MltA specific insert domain HVW55_05795 PF00899 ThiF family HVW55_05800 PF02657 Fe-S metabolism associated domain HVW55_05805 PF00266 Aminotransferase class-V HVW55_05810 PF06004 Bacterial protein of unknown function (DUF903) HVW55_05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_05815 PF03466 LysR substrate binding domain HVW55_05820 PF04241 Protein of unknown function (DUF423) HVW55_05825 PF18125 RlmM ferredoxin-like domain HVW55_05825 PF01728 FtsJ-like methyltransferase HVW55_05830 PF08220 DeoR-like helix-turn-helix domain HVW55_05830 PF00455 DeoR C terminal sensor domain HVW55_05835 PF05025 RbsD / FucU transport protein family HVW55_05840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_05840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HVW55_05845 PF02952 L-fucose isomerase, C-terminal domain HVW55_05845 PF07882 L-fucose isomerase, second N-terminal domain HVW55_05845 PF07881 L-fucose isomerase, first N-terminal domain HVW55_05850 PF07690 Major Facilitator Superfamily HVW55_05855 PF00596 Class II Aldolase and Adducin N-terminal domain HVW55_05860 PF00465 Iron-containing alcohol dehydrogenase HVW55_05865 PF01367 5'-3' exonuclease, C-terminal SAM fold HVW55_05865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HVW55_05870 PF03315 Serine dehydratase beta chain HVW55_05870 PF03313 Serine dehydratase alpha chain HVW55_05880 PF03641 Possible lysine decarboxylase HVW55_05880 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HVW55_05880 PF11892 Domain of unknown function (DUF3412) HVW55_05885 PF14489 QueF-like protein HVW55_05885 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HVW55_05890 PF07348 Syd protein (SUKH-2) HVW55_05895 PF04287 tRNA pseudouridine synthase C HVW55_05900 PF00849 RNA pseudouridylate synthase HVW55_05905 PF00258 Flavodoxin HVW55_05910 PF07690 Major Facilitator Superfamily HVW55_05915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HVW55_05915 PF13378 Enolase C-terminal domain-like HVW55_05920 PF13378 Enolase C-terminal domain-like HVW55_05925 PF00512 His Kinase A (phospho-acceptor) domain HVW55_05925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_05925 PF01627 Hpt domain HVW55_05925 PF00072 Response regulator receiver domain HVW55_05925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HVW55_05925 PF00672 HAMP domain HVW55_05930 PF05958 tRNA (Uracil-5-)-methyltransferase HVW55_05930 PF01938 TRAM domain HVW55_05935 PF02824 TGS domain HVW55_05935 PF04607 Region found in RelA / SpoT proteins HVW55_05935 PF13291 ACT domain HVW55_05940 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HVW55_05945 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HVW55_05950 PF03819 MazG nucleotide pyrophosphohydrolase domain HVW55_05955 PF06418 CTP synthase N-terminus HVW55_05955 PF00117 Glutamine amidotransferase class-I HVW55_05960 PF03952 Enolase, N-terminal domain HVW55_05960 PF00113 Enolase, C-terminal TIM barrel domain HVW55_05965 PF01609 Transposase DDE domain HVW55_05965 PF13006 Insertion element 4 transposase N-terminal HVW55_05980 PF04055 Radical SAM superfamily HVW55_05985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_05985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HVW55_05990 PF07690 Major Facilitator Superfamily HVW55_06000 PF01565 FAD binding domain HVW55_06000 PF02913 FAD linked oxidases, C-terminal domain HVW55_06005 PF00083 Sugar (and other) transporter HVW55_06010 PF01012 Electron transfer flavoprotein domain HVW55_06015 PF01012 Electron transfer flavoprotein domain HVW55_06015 PF00766 Electron transfer flavoprotein FAD-binding domain HVW55_06020 PF04309 Glycerol-3-phosphate responsive antiterminator HVW55_06030 PF01266 FAD dependent oxidoreductase HVW55_06035 PF01242 6-pyruvoyl tetrahydropterin synthase HVW55_06040 PF00175 Oxidoreductase NAD-binding domain HVW55_06040 PF00258 Flavodoxin HVW55_06040 PF00667 FAD binding domain HVW55_06045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HVW55_06045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HVW55_06050 PF01507 Phosphoadenosine phosphosulfate reductase family HVW55_06055 PF00270 DEAD/DEAH box helicase HVW55_06055 PF00271 Helicase conserved C-terminal domain HVW55_06055 PF18019 HD domain HVW55_06060 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) HVW55_06065 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) HVW55_06070 PF09344 CT1975-like protein HVW55_06075 PF09704 CRISPR-associated protein (Cas_Cas5) HVW55_06080 PF08798 CRISPR associated protein HVW55_06085 PF01867 CRISPR associated protein Cas1 HVW55_06090 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) HVW55_06095 PF04389 Peptidase family M28 HVW55_06100 PF01507 Phosphoadenosine phosphosulfate reductase family HVW55_06105 PF00009 Elongation factor Tu GTP binding domain HVW55_06115 PF12084 Protein of unknown function (DUF3561) HVW55_06120 PF04977 Septum formation initiator HVW55_06125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HVW55_06130 PF02542 YgbB family HVW55_06135 PF01142 tRNA pseudouridine synthase D (TruD) HVW55_06140 PF01975 Survival protein SurE HVW55_06150 PF01476 LysM domain HVW55_06150 PF01551 Peptidase family M23 HVW55_06155 PF04545 Sigma-70, region 4 HVW55_06155 PF04539 Sigma-70 region 3 HVW55_06155 PF04542 Sigma-70 region 2 HVW55_06155 PF00140 Sigma-70 factor, region 1.2 HVW55_06160 PF01047 MarR family HVW55_06165 PF02441 Flavoprotein HVW55_06170 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HVW55_06180 PF00149 Calcineurin-like phosphoesterase HVW55_06185 PF01624 MutS domain I HVW55_06185 PF05188 MutS domain II HVW55_06185 PF05192 MutS domain III HVW55_06185 PF05190 MutS family domain IV HVW55_06185 PF00488 MutS domain V HVW55_06195 PF11756 Nitrous oxide-stimulated promoter HVW55_06200 PF00158 Sigma-54 interaction domain HVW55_06200 PF01590 GAF domain HVW55_06205 PF00586 AIR synthase related protein, N-terminal domain HVW55_06205 PF02769 AIR synthase related protein, C-terminal domain HVW55_06210 PF01924 Hydrogenase formation hypA family HVW55_06215 PF01455 HupF/HypC family HVW55_06220 PF02492 CobW/HypB/UreG, nucleotide-binding domain HVW55_06225 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HVW55_06230 PF11046 Transcriptional repressor of hyc and hyp operons HVW55_06235 PF13247 4Fe-4S dicluster domain HVW55_06240 PF00361 Proton-conducting membrane transporter HVW55_06245 PF00146 NADH dehydrogenase HVW55_06250 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HVW55_06250 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HVW55_06250 PF00374 Nickel-dependent hydrogenase HVW55_06255 PF12838 4Fe-4S dicluster domain HVW55_06260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HVW55_06265 PF07450 Formate hydrogenlyase maturation protein HycH HVW55_06270 PF01750 Hydrogenase maturation protease HVW55_06285 PF00232 Glycosyl hydrolase family 1 HVW55_06290 PF02378 Phosphotransferase system, EIIC HVW55_06290 PF00367 phosphotransferase system, EIIB HVW55_06295 PF00356 Bacterial regulatory proteins, lacI family HVW55_06300 PF13247 4Fe-4S dicluster domain HVW55_06300 PF12800 4Fe-4S binding domain HVW55_06305 PF17788 HypF Kae1-like domain HVW55_06305 PF00708 Acylphosphatase HVW55_06305 PF01300 Telomere recombination HVW55_06305 PF07503 HypF finger HVW55_06310 PF18113 Rubredoxin binding C-terminal domain HVW55_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_06315 PF00258 Flavodoxin HVW55_06315 PF00753 Metallo-beta-lactamase superfamily HVW55_06315 PF00301 Rubredoxin HVW55_06320 PF01590 GAF domain HVW55_06320 PF00158 Sigma-54 interaction domain HVW55_06325 PF00571 CBS domain HVW55_06325 PF01380 SIS domain HVW55_06330 PF08220 DeoR-like helix-turn-helix domain HVW55_06330 PF00455 DeoR C terminal sensor domain HVW55_06335 PF06923 Glucitol operon activator protein (GutM) HVW55_06340 PF00106 short chain dehydrogenase HVW55_06345 PF03829 PTS system glucitol/sorbitol-specific IIA component HVW55_06350 PF03612 Sorbitol phosphotransferase enzyme II N-terminus HVW55_06350 PF07663 Sorbitol phosphotransferase enzyme II C-terminus HVW55_06355 PF03608 PTS system enzyme II sorbitol-specific factor HVW55_06360 PF13406 Transglycosylase SLT domain HVW55_06365 PF02464 Competence-damaged protein HVW55_06370 PF00154 recA bacterial DNA recombination protein HVW55_06375 PF02631 RecX family HVW55_06380 PF02272 DHHA1 domain HVW55_06380 PF01411 tRNA synthetases class II (A) HVW55_06380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HVW55_06385 PF02599 Global regulator protein family HVW55_06415 PF13419 Haloacid dehalogenase-like hydrolase HVW55_06420 PF09335 SNARE associated Golgi protein HVW55_06425 PF04262 Glutamate-cysteine ligase HVW55_06430 PF02664 S-Ribosylhomocysteinase (LuxS) HVW55_06445 PF07690 Major Facilitator Superfamily HVW55_06450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_06450 PF00529 HlyD membrane-fusion protein of T1SS HVW55_06455 PF01047 MarR family HVW55_06460 PF05437 Branched-chain amino acid transport protein (AzlD) HVW55_06465 PF03591 AzlC protein HVW55_06470 PF07690 Major Facilitator Superfamily HVW55_06475 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HVW55_06480 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_06485 PF00571 CBS domain HVW55_06485 PF00005 ABC transporter HVW55_06490 PF00268 Ribonucleotide reductase, small chain HVW55_06495 PF00317 Ribonucleotide reductase, all-alpha domain HVW55_06495 PF08343 Ribonucleotide reductase N-terminal HVW55_06495 PF02867 Ribonucleotide reductase, barrel domain HVW55_06500 PF07972 NrdI Flavodoxin like HVW55_06505 PF00462 Glutaredoxin HVW55_06510 PF02627 Carboxymuconolactone decarboxylase family HVW55_06515 PF00392 Bacterial regulatory proteins, gntR family HVW55_06515 PF00155 Aminotransferase class I and II HVW55_06520 PF05957 Bacterial protein of unknown function (DUF883) HVW55_06525 PF09400 Protein of unknown function (DUF2002) HVW55_06530 PF06610 L-alanine exporter HVW55_06535 PF00816 H-NS histone family HVW55_06540 PF11127 Protein of unknown function (DUF2892) HVW55_06540 PF00581 Rhodanese-like domain HVW55_06545 PF01022 Bacterial regulatory protein, arsR family HVW55_06550 PF01679 Proteolipid membrane potential modulator HVW55_06555 PF01476 LysM domain HVW55_06555 PF04972 BON domain HVW55_06560 PF00392 Bacterial regulatory proteins, gntR family HVW55_06560 PF07729 FCD domain HVW55_06565 PF00324 Amino acid permease HVW55_06570 PF00202 Aminotransferase class-III HVW55_06575 PF00171 Aldehyde dehydrogenase family HVW55_06580 PF01266 FAD dependent oxidoreductase HVW55_06585 PF08943 CsiD HVW55_06590 PF00128 Alpha amylase, catalytic domain HVW55_06600 PF17621 Family of unknown function (DUF5508) HVW55_06625 PF17345 Family of unknown function (DUF5375) HVW55_06675 PF00589 Phage integrase family HVW55_06675 PF13356 Arm DNA-binding domain HVW55_06685 PF01668 SmpB protein HVW55_06690 PF03364 Polyketide cyclase / dehydrase and lipid transport HVW55_06695 PF03658 RnfH family Ubiquitin HVW55_06700 PF04355 SmpA / OmlA family HVW55_06705 PF02463 RecF/RecN/SMC N terminal domain HVW55_06710 PF01513 ATP-NAD kinase HVW55_06715 PF01025 GrpE HVW55_06720 PF01595 Cyclin M transmembrane N-terminal domain HVW55_06720 PF00571 CBS domain HVW55_06720 PF03471 Transporter associated domain HVW55_06725 PF01578 Cytochrome C assembly protein HVW55_06730 PF02978 Signal peptide binding domain HVW55_06730 PF02881 SRP54-type protein, helical bundle domain HVW55_06730 PF00448 SRP54-type protein, GTPase domain HVW55_06735 PF00886 Ribosomal protein S16 HVW55_06740 PF01782 RimM N-terminal domain HVW55_06740 PF05239 PRC-barrel domain HVW55_06745 PF01746 tRNA (Guanine-1)-methyltransferase HVW55_06750 PF01245 Ribosomal protein L19 HVW55_06755 PF00691 OmpA family HVW55_06765 PF13689 YfiR/HmsC-like HVW55_06770 PF10973 Protein of unknown function (DUF2799) HVW55_06775 PF00793 DAHP synthetase I family HVW55_06780 PF01817 Chorismate mutase type II HVW55_06780 PF02153 Prephenate dehydrogenase HVW55_06785 PF00800 Prephenate dehydratase HVW55_06785 PF01817 Chorismate mutase type II HVW55_06795 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HVW55_06800 PF01609 Transposase DDE domain HVW55_06800 PF13006 Insertion element 4 transposase N-terminal HVW55_06805 PF13525 Outer membrane lipoprotein HVW55_06810 PF00849 RNA pseudouridylate synthase HVW55_06810 PF01479 S4 domain HVW55_06820 PF17871 AAA lid domain HVW55_06820 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_06820 PF07724 AAA domain (Cdc48 subfamily) HVW55_06820 PF02861 Clp amino terminal domain, pathogenicity island component HVW55_06820 PF10431 C-terminal, D2-small domain, of ClpB protein HVW55_06845 PF00083 Sugar (and other) transporter HVW55_06850 PF10043 Predicted periplasmic lipoprotein (DUF2279) HVW55_06855 PF13091 PLD-like domain HVW55_06860 PF00583 Acetyltransferase (GNAT) family HVW55_06860 PF13380 CoA binding domain HVW55_06860 PF13607 Succinyl-CoA ligase like flavodoxin domain HVW55_06870 PF00085 Thioredoxin HVW55_06875 PF08032 RNA 2'-O ribose methyltransferase substrate binding HVW55_06875 PF00588 SpoU rRNA Methylase family HVW55_06880 PF03167 Uracil DNA glycosylase superfamily HVW55_06885 PF01228 Glycine radical HVW55_06890 PF01810 LysE type translocator HVW55_06895 PF03466 LysR substrate binding domain HVW55_06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_06900 PF00270 DEAD/DEAH box helicase HVW55_06900 PF00271 Helicase conserved C-terminal domain HVW55_06905 PF05175 Methyltransferase small domain HVW55_06910 PF02910 Fumarate reductase flavoprotein C-term HVW55_06910 PF00890 FAD binding domain HVW55_06920 PF08281 Sigma-70, region 4 HVW55_06920 PF04542 Sigma-70 region 2 HVW55_06925 PF03873 Anti sigma-E protein RseA, C-terminal domain HVW55_06925 PF03872 Anti sigma-E protein RseA, N-terminal domain HVW55_06930 PF17188 MucB/RseB C-terminal domain HVW55_06930 PF03888 MucB/RseB N-terminal domain HVW55_06940 PF06421 GTP-binding protein LepA C-terminus HVW55_06940 PF03144 Elongation factor Tu domain 2 HVW55_06940 PF00009 Elongation factor Tu GTP binding domain HVW55_06940 PF00679 Elongation factor G C-terminus HVW55_06945 PF10502 Signal peptidase, peptidase S26 HVW55_06950 PF14622 Ribonuclease-III-like HVW55_06950 PF00035 Double-stranded RNA binding motif HVW55_06955 PF01926 50S ribosome-binding GTPase HVW55_06955 PF07650 KH domain HVW55_06960 PF11967 Recombination protein O N terminal HVW55_06960 PF02565 Recombination protein O C terminal HVW55_06965 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HVW55_06970 PF01648 4'-phosphopantetheinyl transferase superfamily HVW55_06980 PF12838 4Fe-4S dicluster domain HVW55_06985 PF01380 SIS domain HVW55_06985 PF01418 Helix-turn-helix domain, rpiR family HVW55_06995 PF14437 MafB19-like deaminase HVW55_07000 PF01464 Transglycosylase SLT domain HVW55_07000 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_07005 PF02769 AIR synthase related protein, C-terminal domain HVW55_07005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HVW55_07005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HVW55_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_07010 PF00512 His Kinase A (phospho-acceptor) domain HVW55_07015 PF13942 YfhG lipoprotein HVW55_07020 PF00158 Sigma-54 interaction domain HVW55_07020 PF00072 Response regulator receiver domain HVW55_07025 PF00543 Nitrogen regulatory protein P-II HVW55_07030 PF00970 Oxidoreductase FAD-binding domain HVW55_07030 PF00042 Globin HVW55_07030 PF00175 Oxidoreductase NAD-binding domain HVW55_07035 PF00464 Serine hydroxymethyltransferase HVW55_07040 PF00480 ROK family HVW55_07045 PF13181 Tetratricopeptide repeat HVW55_07045 PF17128 Domain of unknown function (DUF5107) HVW55_07050 PF13407 Periplasmic binding protein domain HVW55_07055 PF00005 ABC transporter HVW55_07060 PF02653 Branched-chain amino acid transport system / permease component HVW55_07065 PF00107 Zinc-binding dehydrogenase HVW55_07065 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_07070 PF01263 Aldose 1-epimerase HVW55_07075 PF07681 DoxX HVW55_07080 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_07080 PF14759 Reductase C-terminal HVW55_07085 PF00106 short chain dehydrogenase HVW55_07090 PF00355 Rieske [2Fe-2S] domain HVW55_07095 PF00866 Ring hydroxylating beta subunit HVW55_07100 PF00355 Rieske [2Fe-2S] domain HVW55_07100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HVW55_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_07105 PF03466 LysR substrate binding domain HVW55_07110 PF12832 MFS_1 like family HVW55_07115 PF00874 PRD domain HVW55_07120 PF12146 Serine aminopeptidase, S33 HVW55_07125 PF00459 Inositol monophosphatase family HVW55_07130 PF00588 SpoU rRNA Methylase family HVW55_07135 PF02082 Transcriptional regulator HVW55_07140 PF00266 Aminotransferase class-V HVW55_07145 PF01592 NifU-like N terminal domain HVW55_07150 PF01521 Iron-sulphur cluster biosynthesis HVW55_07155 PF07743 HSCB C-terminal oligomerisation domain HVW55_07160 PF00012 Hsp70 protein HVW55_07165 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_07170 PF04384 Iron-sulphur cluster assembly HVW55_07175 PF00883 Cytosol aminopeptidase family, catalytic domain HVW55_07175 PF12404 Peptidase HVW55_07180 PF07179 SseB protein N-terminal domain HVW55_07180 PF14581 SseB protein C-terminal domain HVW55_07190 PF00581 Rhodanese-like domain HVW55_07195 PF07703 Alpha-2-macroglobulin bait region domain HVW55_07195 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HVW55_07195 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HVW55_07195 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HVW55_07195 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HVW55_07195 PF17962 Bacterial macroglobulin domain 6 HVW55_07195 PF01835 MG2 domain HVW55_07195 PF00207 Alpha-2-macroglobulin family HVW55_07195 PF07678 A-macroglobulin TED domain HVW55_07200 PF00905 Penicillin binding protein transpeptidase domain HVW55_07200 PF06832 Penicillin-Binding Protein C-terminus Family HVW55_07200 PF00912 Transglycosylase HVW55_07205 PF00334 Nucleoside diphosphate kinase HVW55_07210 PF04055 Radical SAM superfamily HVW55_07215 PF13464 Domain of unknown function (DUF4115) HVW55_07220 PF04551 GcpE protein HVW55_07225 PF03129 Anticodon binding domain HVW55_07225 PF13393 Histidyl-tRNA synthetase HVW55_07230 PF09976 Tetratricopeptide repeat-like domain HVW55_07235 PF13360 PQQ-like domain HVW55_07240 PF01926 50S ribosome-binding GTPase HVW55_07240 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HVW55_07245 PF07191 zinc-ribbons HVW55_07250 PF09134 Invasin, domain 3 HVW55_07250 PF07979 Intimin C-type lectin domain HVW55_07250 PF11924 Inverse autotransporter, beta-domain HVW55_07250 PF02369 Bacterial Ig-like domain (group 1) HVW55_07265 PF13742 OB-fold nucleic acid binding domain HVW55_07265 PF02601 Exonuclease VII, large subunit HVW55_07270 PF00478 IMP dehydrogenase / GMP reductase domain HVW55_07270 PF00571 CBS domain HVW55_07275 PF00117 Glutamine amidotransferase class-I HVW55_07275 PF00958 GMP synthase C terminal domain HVW55_07275 PF02540 NAD synthase HVW55_07290 PF17358 Family of unknown function (DUF5384) HVW55_07295 PF05433 Glycine zipper 2TM domain HVW55_07300 PF11119 Protein of unknown function (DUF2633) HVW55_07310 PF05231 MASE1 HVW55_07310 PF00563 EAL domain HVW55_07315 PF02541 Ppx/GppA phosphatase family HVW55_07320 PF13089 Polyphosphate kinase N-terminal domain HVW55_07320 PF17941 Polyphosphate kinase C-terminal domain 1 HVW55_07320 PF13090 Polyphosphate kinase C-terminal domain 2 HVW55_07320 PF02503 Polyphosphate kinase middle domain HVW55_07325 PF00551 Formyl transferase HVW55_07330 PF00586 AIR synthase related protein, N-terminal domain HVW55_07330 PF02769 AIR synthase related protein, C-terminal domain HVW55_07340 PF00860 Permease family HVW55_07345 PF00308 Bacterial dnaA protein HVW55_07350 PF03960 ArsC family HVW55_07355 PF01435 Peptidase family M48 HVW55_07360 PF01594 AI-2E family transporter HVW55_07365 PF01226 Formate/nitrite transporter HVW55_07370 PF00158 Sigma-54 interaction domain HVW55_07370 PF01590 GAF domain HVW55_07375 PF07450 Formate hydrogenlyase maturation protein HycH HVW55_07380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HVW55_07385 PF12838 4Fe-4S dicluster domain HVW55_07390 PF00374 Nickel-dependent hydrogenase HVW55_07390 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HVW55_07390 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HVW55_07395 PF00361 Proton-conducting membrane transporter HVW55_07395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HVW55_07400 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HVW55_07405 PF00361 Proton-conducting membrane transporter HVW55_07405 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HVW55_07410 PF00146 NADH dehydrogenase HVW55_07415 PF00361 Proton-conducting membrane transporter HVW55_07420 PF00037 4Fe-4S binding domain HVW55_07420 PF12798 4Fe-4S binding domain HVW55_07425 PF00578 AhpC/TSA family HVW55_07430 PF01842 ACT domain HVW55_07435 PF00701 Dihydrodipicolinate synthetase family HVW55_07440 PF06804 NlpB/DapX lipoprotein HVW55_07445 PF01259 SAICAR synthetase HVW55_07450 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HVW55_07455 PF01850 PIN domain HVW55_07460 PF04228 Putative neutral zinc metallopeptidase HVW55_07465 PF17176 tRNA-binding domain HVW55_07465 PF05127 Helicase HVW55_07465 PF08351 Domain of unknown function (DUF1726) HVW55_07465 PF13718 GNAT acetyltransferase 2 HVW55_07470 PF02230 Phospholipase/Carboxylesterase HVW55_07475 PF13980 Uncharacterised protein family (UPF0370) HVW55_07480 PF01546 Peptidase family M20/M25/M40 HVW55_07480 PF07687 Peptidase dimerisation domain HVW55_07485 PF03960 ArsC family HVW55_07495 PF00873 AcrB/AcrD/AcrF family HVW55_07500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_07500 PF00672 HAMP domain HVW55_07500 PF07730 Histidine kinase HVW55_07500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HVW55_07505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HVW55_07505 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_07505 PF13247 4Fe-4S dicluster domain HVW55_07510 PF00293 NUDIX domain HVW55_07515 PF06674 Protein of unknown function (DUF1176) HVW55_07520 PF02780 Transketolase, C-terminal domain HVW55_07520 PF00456 Transketolase, thiamine diphosphate binding domain HVW55_07520 PF02779 Transketolase, pyrimidine binding domain HVW55_07525 PF00923 Transaldolase/Fructose-6-phosphate aldolase HVW55_07530 PF01515 Phosphate acetyl/butaryl transferase HVW55_07530 PF03949 Malic enzyme, NAD binding domain HVW55_07530 PF00390 Malic enzyme, N-terminal domain HVW55_07535 PF00936 BMC domain HVW55_07540 PF10662 Ethanolamine utilisation - propanediol utilisation HVW55_07545 PF06249 Ethanolamine utilisation protein EutQ HVW55_07550 PF01923 Cobalamin adenosyltransferase HVW55_07555 PF01515 Phosphate acetyl/butaryl transferase HVW55_07560 PF00936 BMC domain HVW55_07565 PF03319 Ethanolamine utilisation protein EutN/carboxysome HVW55_07570 PF00171 Aldehyde dehydrogenase family HVW55_07580 PF00465 Iron-containing alcohol dehydrogenase HVW55_07585 PF04346 Ethanolamine utilisation protein, EutH HVW55_07590 PF06277 Ethanolamine utilisation protein EutA HVW55_07595 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HVW55_07600 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HVW55_07605 PF00936 BMC domain HVW55_07610 PF00936 BMC domain HVW55_07610 PF16365 Ethanolamine utilization protein EutK C-terminus HVW55_07615 PF12833 Helix-turn-helix domain HVW55_07620 PF01218 Coproporphyrinogen III oxidase HVW55_07625 PF01520 N-acetylmuramoyl-L-alanine amidase HVW55_07630 PF00583 Acetyltransferase (GNAT) family HVW55_07635 PF11143 Protein of unknown function (DUF2919) HVW55_07640 PF06572 Protein of unknown function (DUF1131) HVW55_07645 PF04261 Dyp-type peroxidase family HVW55_07650 PF00144 Beta-lactamase HVW55_07655 PF02378 Phosphotransferase system, EIIC HVW55_07655 PF00367 phosphotransferase system, EIIB HVW55_07660 PF01380 SIS domain HVW55_07665 PF01380 SIS domain HVW55_07665 PF01418 Helix-turn-helix domain, rpiR family HVW55_07680 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_07685 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_07690 PF00005 ABC transporter HVW55_07695 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_07700 PF17263 Family of unknown function (DUF5329) HVW55_07705 PF08543 Phosphomethylpyrimidine kinase HVW55_07710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HVW55_07715 PF05524 PEP-utilising enzyme, N-terminal HVW55_07715 PF00391 PEP-utilising enzyme, mobile domain HVW55_07715 PF02896 PEP-utilising enzyme, TIM barrel domain HVW55_07720 PF00381 PTS HPr component phosphorylation site HVW55_07725 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_07735 PF04354 ZipA, C-terminal FtsZ-binding domain HVW55_07740 PF01653 NAD-dependent DNA ligase adenylation domain HVW55_07740 PF03120 NAD-dependent DNA ligase OB-fold domain HVW55_07740 PF00533 BRCA1 C Terminus (BRCT) domain HVW55_07740 PF12826 Helix-hairpin-helix motif HVW55_07740 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HVW55_07745 PF12843 Putative quorum-sensing-regulated virulence factor HVW55_07750 PF13593 SBF-like CPA transporter family (DUF4137) HVW55_07755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_07755 PF03466 LysR substrate binding domain HVW55_07785 PF00749 tRNA synthetases class I (E and Q), catalytic domain HVW55_07790 PF07037 Putative transcription regulator (DUF1323) HVW55_07795 PF07037 Putative transcription regulator (DUF1323) HVW55_07810 PF05231 MASE1 HVW55_07810 PF00563 EAL domain HVW55_07815 PF07662 Na+ dependent nucleoside transporter C-terminus HVW55_07815 PF01773 Na+ dependent nucleoside transporter N-terminus HVW55_07815 PF07670 Nucleoside recognition HVW55_07820 PF01566 Natural resistance-associated macrophage protein HVW55_07825 PF10697 Protein of unknown function (DUF2502) HVW55_07830 PF00654 Voltage gated chloride channel HVW55_07835 PF02685 Glucokinase HVW55_07840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_07845 PF02378 Phosphotransferase system, EIIC HVW55_07850 PF00557 Metallopeptidase family M24 HVW55_07850 PF01321 Creatinase/Prolidase N-terminal domain HVW55_07855 PF05343 M42 glutamyl aminopeptidase HVW55_07860 PF05524 PEP-utilising enzyme, N-terminal HVW55_07860 PF00391 PEP-utilising enzyme, mobile domain HVW55_07860 PF02896 PEP-utilising enzyme, TIM barrel domain HVW55_07860 PF00381 PTS HPr component phosphorylation site HVW55_07860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_07865 PF12833 Helix-turn-helix domain HVW55_07870 PF00072 Response regulator receiver domain HVW55_07870 PF04397 LytTr DNA-binding domain HVW55_07875 PF06580 Histidine kinase HVW55_07875 PF07694 5TMR of 5TMR-LYT HVW55_07875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_07880 PF00155 Aminotransferase class I and II HVW55_07890 PF03279 Bacterial lipid A biosynthesis acyltransferase HVW55_07895 PF10810 Protein of unknown function (DUF2545) HVW55_07905 PF10938 YfdX protein HVW55_07910 PF02515 CoA-transferase family III HVW55_07915 PF00205 Thiamine pyrophosphate enzyme, central domain HVW55_07915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_07915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_07920 PF03547 Membrane transport protein HVW55_07925 PF02515 CoA-transferase family III HVW55_07930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_07930 PF00072 Response regulator receiver domain HVW55_07930 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_07930 PF00512 His Kinase A (phospho-acceptor) domain HVW55_07935 PF00196 Bacterial regulatory proteins, luxR family HVW55_07935 PF00072 Response regulator receiver domain HVW55_07940 PF00529 HlyD membrane-fusion protein of T1SS HVW55_07940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_07945 PF07690 Major Facilitator Superfamily HVW55_07950 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_07960 PF00356 Bacterial regulatory proteins, lacI family HVW55_07960 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_07965 PF08244 Glycosyl hydrolases family 32 C terminal HVW55_07965 PF00251 Glycosyl hydrolases family 32 N-terminal domain HVW55_07970 PF00294 pfkB family carbohydrate kinase HVW55_07975 PF01306 LacY proton/sugar symporter HVW55_07990 PF01226 Formate/nitrite transporter HVW55_07995 PF04333 MlaA lipoprotein HVW55_08005 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HVW55_08010 PF04175 Protein of unknown function (DUF406) HVW55_08015 PF00108 Thiolase, N-terminal domain HVW55_08015 PF02803 Thiolase, C-terminal domain HVW55_08020 PF00378 Enoyl-CoA hydratase/isomerase HVW55_08020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HVW55_08020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HVW55_08025 PF00300 Histidine phosphatase superfamily (branch 1) HVW55_08030 PF00419 Fimbrial protein HVW55_08040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_08040 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_08045 PF00419 Fimbrial protein HVW55_08050 PF00419 Fimbrial protein HVW55_08055 PF00419 Fimbrial protein HVW55_08060 PF11245 Protein of unknown function (DUF2544) HVW55_08065 PF01713 Smr domain HVW55_08070 PF05175 Methyltransferase small domain HVW55_08075 PF01264 Chorismate synthase HVW55_08080 PF03411 Penicillin-insensitive murein endopeptidase HVW55_08085 PF01925 Sulfite exporter TauE/SafE HVW55_08090 PF04315 Elongation factor P hydroxylase HVW55_08095 PF08891 YfcL protein HVW55_08100 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HVW55_08100 PF01266 FAD dependent oxidoreductase HVW55_08105 PF02801 Beta-ketoacyl synthase, C-terminal domain HVW55_08105 PF00109 Beta-ketoacyl synthase, N-terminal domain HVW55_08110 PF07690 Major Facilitator Superfamily HVW55_08150 PF04984 Phage tail sheath protein subtilisin-like domain HVW55_08150 PF17482 Phage tail sheath C-terminal domain HVW55_08185 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_08190 PF03335 Phage tail fibre repeat HVW55_08190 PF08400 Prophage tail fibre N-terminal HVW55_08190 PF07484 Phage Tail Collar Domain HVW55_08285 PF10784 Plasmid stability protein HVW55_08290 PF06406 StbA protein HVW55_08295 PF05840 Bacteriophage replication gene A protein (GPA) HVW55_08360 PF02899 Phage integrase, N-terminal SAM-like domain HVW55_08360 PF00589 Phage integrase family HVW55_08365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HVW55_08365 PF11890 Domain of unknown function (DUF3410) HVW55_08365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HVW55_08370 PF01118 Semialdehyde dehydrogenase, NAD binding domain HVW55_08370 PF02774 Semialdehyde dehydrogenase, dimerisation domain HVW55_08375 PF01416 tRNA pseudouridine synthase HVW55_08380 PF09335 SNARE associated Golgi protein HVW55_08385 PF17848 Acetyl-coA carboxylase zinc finger domain HVW55_08385 PF01039 Carboxyl transferase domain HVW55_08390 PF08245 Mur ligase middle domain HVW55_08390 PF02875 Mur ligase family, glutamate ligase domain HVW55_08395 PF05036 Sporulation related domain HVW55_08400 PF02674 Colicin V production protein HVW55_08405 PF00156 Phosphoribosyl transferase domain HVW55_08410 PF02441 Flavoprotein HVW55_08415 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_08420 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_08425 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_08430 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_08435 PF00005 ABC transporter HVW55_08440 PF04754 Putative transposase, YhgA-like HVW55_08445 PF01370 NAD dependent epimerase/dehydratase family HVW55_08445 PF08338 Domain of unknown function (DUF1731) HVW55_08450 PF02152 Dihydroneopterin aldolase HVW55_08455 PF00043 Glutathione S-transferase, C-terminal domain HVW55_08455 PF02798 Glutathione S-transferase, N-terminal domain HVW55_08460 PF14834 Glutathione S-transferase, C-terminal domain HVW55_08460 PF02798 Glutathione S-transferase, N-terminal domain HVW55_08465 PF12850 Calcineurin-like phosphoesterase superfamily domain HVW55_08470 PF00293 NUDIX domain HVW55_08475 PF03606 C4-dicarboxylate anaerobic carrier HVW55_08480 PF07085 DRTGG domain HVW55_08480 PF01515 Phosphate acetyl/butaryl transferase HVW55_08485 PF00871 Acetokinase family HVW55_08490 PF04217 Protein of unknown function, DUF412 HVW55_08495 PF03887 YfbU domain HVW55_08500 PF13419 Haloacid dehalogenase-like hydrolase HVW55_08505 PF02080 TrkA-C domain HVW55_08505 PF03600 Citrate transporter HVW55_08515 PF00155 Aminotransferase class I and II HVW55_08520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_08520 PF03466 LysR substrate binding domain HVW55_08525 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HVW55_08530 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HVW55_08535 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HVW55_08535 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HVW55_08545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HVW55_08545 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HVW55_08545 PF10531 SLBB domain HVW55_08550 PF00384 Molybdopterin oxidoreductase HVW55_08550 PF01568 Molydopterin dinucleotide binding domain HVW55_08550 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HVW55_08550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HVW55_08555 PF00146 NADH dehydrogenase HVW55_08560 PF12838 4Fe-4S dicluster domain HVW55_08565 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HVW55_08570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HVW55_08575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HVW55_08575 PF00361 Proton-conducting membrane transporter HVW55_08580 PF00361 Proton-conducting membrane transporter HVW55_08585 PF00361 Proton-conducting membrane transporter HVW55_08590 PF08974 Domain of unknown function (DUF1877) HVW55_08600 PF02902 Ulp1 protease family, C-terminal catalytic domain HVW55_08605 PF12706 Beta-lactamase superfamily domain HVW55_08610 PF13673 Acetyltransferase (GNAT) domain HVW55_08615 PF05957 Bacterial protein of unknown function (DUF883) HVW55_08620 PF00425 chorismate binding enzyme HVW55_08625 PF16582 Middle domain of thiamine pyrophosphate HVW55_08625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_08625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_08630 PF12697 Alpha/beta hydrolase family HVW55_08635 PF00378 Enoyl-CoA hydratase/isomerase HVW55_08640 PF13378 Enolase C-terminal domain-like HVW55_08645 PF00501 AMP-binding enzyme HVW55_08645 PF13193 AMP-binding enzyme C-terminal domain HVW55_08660 PF00892 EamA-like transporter family HVW55_08665 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HVW55_08670 PF01522 Polysaccharide deacetylase HVW55_08675 PF00551 Formyl transferase HVW55_08675 PF01370 NAD dependent epimerase/dehydratase family HVW55_08675 PF02911 Formyl transferase, C-terminal domain HVW55_08680 PF00535 Glycosyl transferase family 2 HVW55_08685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HVW55_08690 PF00300 Histidine phosphatase superfamily (branch 1) HVW55_08695 PF00293 NUDIX domain HVW55_08700 PF07437 YfaZ precursor HVW55_08705 PF00994 Probable molybdopterin binding domain HVW55_08710 PF01614 Bacterial transcriptional regulator HVW55_08710 PF09339 IclR helix-turn-helix domain HVW55_08715 PF13378 Enolase C-terminal domain-like HVW55_08715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HVW55_08720 PF07690 Major Facilitator Superfamily HVW55_08725 PF03328 HpcH/HpaI aldolase/citrate lyase family HVW55_08735 PF04754 Putative transposase, YhgA-like HVW55_08740 PF02754 Cysteine-rich domain HVW55_08740 PF13183 4Fe-4S dicluster domain HVW55_08745 PF00890 FAD binding domain HVW55_08750 PF04324 BFD-like [2Fe-2S] binding domain HVW55_08750 PF01266 FAD dependent oxidoreductase HVW55_08755 PF07690 Major Facilitator Superfamily HVW55_08760 PF03009 Glycerophosphoryl diester phosphodiesterase family HVW55_08780 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_08785 PF00268 Ribonucleotide reductase, small chain HVW55_08790 PF03477 ATP cone domain HVW55_08790 PF00317 Ribonucleotide reductase, all-alpha domain HVW55_08790 PF02867 Ribonucleotide reductase, barrel domain HVW55_08795 PF12951 Passenger-associated-transport-repeat HVW55_08795 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat HVW55_08795 PF03797 Autotransporter beta-domain HVW55_08805 PF00521 DNA gyrase/topoisomerase IV, subunit A HVW55_08805 PF03989 DNA gyrase C-terminal domain, beta-propeller HVW55_08810 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) HVW55_08815 PF06672 Protein of unknown function (DUF1175) HVW55_08820 PF00207 Alpha-2-macroglobulin family HVW55_08820 PF01835 MG2 domain HVW55_08820 PF07703 Alpha-2-macroglobulin bait region domain HVW55_08830 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) HVW55_08835 PF00072 Response regulator receiver domain HVW55_08835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_08835 PF00512 His Kinase A (phospho-acceptor) domain HVW55_08835 PF09456 RcsC Alpha-Beta-Loop (ABL) HVW55_08840 PF00072 Response regulator receiver domain HVW55_08840 PF00196 Bacterial regulatory proteins, luxR family HVW55_08845 PF16359 RcsD-ABL domain HVW55_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_08845 PF01627 Hpt domain HVW55_08850 PF00267 Gram-negative porin HVW55_08855 PF02424 ApbE family HVW55_08860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HVW55_08860 PF12833 Helix-turn-helix domain HVW55_08860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HVW55_08860 PF02805 Metal binding domain of Ada HVW55_08865 PF13532 2OG-Fe(II) oxygenase superfamily HVW55_08870 PF00005 ABC transporter HVW55_08875 PF06039 Malate:quinone oxidoreductase (Mqo) HVW55_08880 PF03974 Ecotin HVW55_08890 PF00037 4Fe-4S binding domain HVW55_08890 PF13187 4Fe-4S dicluster domain HVW55_08890 PF12800 4Fe-4S binding domain HVW55_08895 PF03927 NapD protein HVW55_08900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HVW55_08900 PF00384 Molybdopterin oxidoreductase HVW55_08900 PF01568 Molydopterin dinucleotide binding domain HVW55_08905 PF12800 4Fe-4S binding domain HVW55_08905 PF12838 4Fe-4S dicluster domain HVW55_08910 PF12801 4Fe-4S binding domain HVW55_08910 PF13237 4Fe-4S dicluster domain HVW55_08915 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HVW55_08920 PF03264 NapC/NirT cytochrome c family, N-terminal region HVW55_08925 PF00005 ABC transporter HVW55_08930 PF03379 CcmB protein HVW55_08935 PF01578 Cytochrome C assembly protein HVW55_08940 PF04995 Heme exporter protein D (CcmD) HVW55_08945 PF03100 CcmE HVW55_08950 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HVW55_08950 PF01578 Cytochrome C assembly protein HVW55_08955 PF08534 Redoxin HVW55_08960 PF03918 Cytochrome C biogenesis protein HVW55_08965 PF00072 Response regulator receiver domain HVW55_08965 PF00196 Bacterial regulatory proteins, luxR family HVW55_08970 PF03797 Autotransporter beta-domain HVW55_08970 PF03212 Pertactin HVW55_08970 PF16168 Adhesin of bacterial autotransporter system, probable stalk HVW55_08980 PF11893 Domain of unknown function (DUF3413) HVW55_08980 PF00884 Sulfatase HVW55_08985 PF07208 Protein of unknown function (DUF1414) HVW55_08990 PF04245 37-kD nucleoid-associated bacterial protein HVW55_08995 PF01386 Ribosomal L25p family HVW55_09000 PF04851 Type III restriction enzyme, res subunit HVW55_09000 PF00271 Helicase conserved C-terminal domain HVW55_09005 PF01479 S4 domain HVW55_09005 PF00849 RNA pseudouridylate synthase HVW55_09010 PF07690 Major Facilitator Superfamily HVW55_09015 PF13989 YejG-like protein HVW55_09020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_09020 PF00005 ABC transporter HVW55_09025 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_09025 PF12911 N-terminal TM domain of oligopeptide transport permease C HVW55_09030 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_09035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_09040 PF12792 CSS motif domain associated with EAL HVW55_09040 PF00563 EAL domain HVW55_09045 PF00877 NlpC/P60 family HVW55_09050 PF01569 PAP2 superfamily HVW55_09055 PF02492 CobW/HypB/UreG, nucleotide-binding domain HVW55_09055 PF07683 Cobalamin synthesis protein cobW C-terminal domain HVW55_09060 PF08125 Mannitol dehydrogenase C-terminal domain HVW55_09060 PF01232 Mannitol dehydrogenase Rossmann domain HVW55_09065 PF09285 Elongation factor P, C-terminal HVW55_09065 PF08207 Elongation factor P (EF-P) KOW-like domain HVW55_09065 PF01132 Elongation factor P (EF-P) OB domain HVW55_09070 PF03692 Putative zinc- or iron-chelating domain HVW55_09075 PF07690 Major Facilitator Superfamily HVW55_09080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_09080 PF00381 PTS HPr component phosphorylation site HVW55_09085 PF00294 pfkB family carbohydrate kinase HVW55_09090 PF02378 Phosphotransferase system, EIIC HVW55_09090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_09095 PF00294 pfkB family carbohydrate kinase HVW55_09100 PF04227 Indigoidine synthase A like protein HVW55_09105 PF01773 Na+ dependent nucleoside transporter N-terminus HVW55_09105 PF07662 Na+ dependent nucleoside transporter C-terminus HVW55_09110 PF00027 Cyclic nucleotide-binding domain HVW55_09115 PF01156 Inosine-uridine preferring nucleoside hydrolase HVW55_09120 PF07662 Na+ dependent nucleoside transporter C-terminus HVW55_09120 PF01773 Na+ dependent nucleoside transporter N-terminus HVW55_09125 PF00294 pfkB family carbohydrate kinase HVW55_09130 PF01261 Xylose isomerase-like TIM barrel HVW55_09135 PF03601 Conserved hypothetical protein 698 HVW55_09140 PF03466 LysR substrate binding domain HVW55_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_09145 PF00324 Amino acid permease HVW55_09150 PF07715 TonB-dependent Receptor Plug Domain HVW55_09150 PF00593 TonB dependent receptor HVW55_09155 PF00756 Putative esterase HVW55_09160 PF01227 GTP cyclohydrolase I HVW55_09165 PF04235 Protein of unknown function (DUF418) HVW55_09170 PF00356 Bacterial regulatory proteins, lacI family HVW55_09175 PF13407 Periplasmic binding protein domain HVW55_09180 PF00005 ABC transporter HVW55_09185 PF02653 Branched-chain amino acid transport system / permease component HVW55_09190 PF01180 Dihydroorotate dehydrogenase HVW55_09195 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HVW55_09195 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_09200 PF10808 Protein of unknown function (DUF2542) HVW55_09205 PF02698 DUF218 domain HVW55_09210 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HVW55_09210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HVW55_09215 PF04172 LrgB-like family HVW55_09220 PF03788 LrgA family HVW55_09225 PF01207 Dihydrouridine synthase (Dus) HVW55_09235 PF02321 Outer membrane efflux protein HVW55_09245 PF09335 SNARE associated Golgi protein HVW55_09250 PF04893 Yip1 domain HVW55_09255 PF00768 D-alanyl-D-alanine carboxypeptidase HVW55_09260 PF01565 FAD binding domain HVW55_09260 PF09330 D-lactate dehydrogenase, membrane binding HVW55_09265 PF14310 Fibronectin type III-like domain HVW55_09265 PF00933 Glycosyl hydrolase family 3 N terminal domain HVW55_09265 PF01915 Glycosyl hydrolase family 3 C-terminal domain HVW55_09270 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HVW55_09275 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_09280 PF00005 ABC transporter HVW55_09285 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_09295 PF13411 MerR HTH family regulatory protein HVW55_09300 PF06580 Histidine kinase HVW55_09300 PF07694 5TMR of 5TMR-LYT HVW55_09305 PF04397 LytTr DNA-binding domain HVW55_09305 PF00072 Response regulator receiver domain HVW55_09310 PF07308 Protein of unknown function (DUF1456) HVW55_09315 PF06998 Protein of unknown function (DUF1307) HVW55_09320 PF04434 SWIM zinc finger HVW55_09325 PF05762 VWA domain containing CoxE-like protein HVW55_09335 PF07728 AAA domain (dynein-related subfamily) HVW55_09345 PF13569 Domain of unknown function (DUF4132) HVW55_09350 PF13569 Domain of unknown function (DUF4132) HVW55_09355 PF09334 tRNA synthetases class I (M) HVW55_09355 PF01588 Putative tRNA binding domain HVW55_09360 PF10609 NUBPL iron-transfer P-loop NTPase HVW55_09365 PF10836 Protein of unknown function (DUF2574) HVW55_09370 PF00419 Fimbrial protein HVW55_09375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_09375 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_09380 PF00577 Outer membrane usher protein HVW55_09380 PF13954 PapC N-terminal domain HVW55_09380 PF13953 PapC C-terminal domain HVW55_09385 PF00419 Fimbrial protein HVW55_09390 PF11776 Nickel/cobalt transporter regulator HVW55_09395 PF03824 High-affinity nickel-transport protein HVW55_09400 PF02583 Metal-sensitive transcriptional repressor HVW55_09405 PF02110 Hydroxyethylthiazole kinase family HVW55_09410 PF08543 Phosphomethylpyrimidine kinase HVW55_09415 PF01183 Glycosyl hydrolases family 25 HVW55_09420 PF07702 UTRA domain HVW55_09420 PF00392 Bacterial regulatory proteins, gntR family HVW55_09425 PF00294 pfkB family carbohydrate kinase HVW55_09430 PF03747 ADP-ribosylglycohydrolase HVW55_09435 PF03825 Nucleoside H+ symporter HVW55_09440 PF01791 DeoC/LacD family aldolase HVW55_09450 PF08013 Tagatose 6 phosphate kinase HVW55_09455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_09460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_09465 PF03611 PTS system sugar-specific permease component HVW55_09470 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_09470 PF00107 Zinc-binding dehydrogenase HVW55_09475 PF08220 DeoR-like helix-turn-helix domain HVW55_09480 PF00781 Diacylglycerol kinase catalytic domain HVW55_09500 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HVW55_09505 PF07411 Domain of unknown function (DUF1508) HVW55_09510 PF00072 Response regulator receiver domain HVW55_09510 PF00486 Transcriptional regulatory protein, C terminal HVW55_09515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_09515 PF00672 HAMP domain HVW55_09515 PF00512 His Kinase A (phospho-acceptor) domain HVW55_09520 PF07690 Major Facilitator Superfamily HVW55_09525 PF00873 AcrB/AcrD/AcrF family HVW55_09530 PF00873 AcrB/AcrD/AcrF family HVW55_09535 PF13533 Biotin-lipoyl like HVW55_09555 PF00092 von Willebrand factor type A domain HVW55_09570 PF00012 Hsp70 protein HVW55_09575 PF06029 AlkA N-terminal domain HVW55_09575 PF00730 HhH-GPD superfamily base excision DNA repair protein HVW55_09580 PF00563 EAL domain HVW55_09580 PF00990 Diguanylate cyclase, GGDEF domain HVW55_09580 PF13426 PAS domain HVW55_09580 PF08448 PAS fold HVW55_09580 PF08447 PAS fold HVW55_09580 PF05231 MASE1 HVW55_09585 PF00485 Phosphoribulokinase / Uridine kinase family HVW55_09590 PF00692 dUTPase HVW55_09595 PF05170 AsmA family HVW55_09610 PF03741 Integral membrane protein TerC family HVW55_09610 PF03471 Transporter associated domain HVW55_09610 PF00571 CBS domain HVW55_09620 PF10531 SLBB domain HVW55_09620 PF02563 Polysaccharide biosynthesis/export protein HVW55_09620 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HVW55_09625 PF01451 Low molecular weight phosphotyrosine protein phosphatase HVW55_09630 PF13614 AAA domain HVW55_09630 PF13807 G-rich domain on putative tyrosine kinase HVW55_09630 PF02706 Chain length determinant protein HVW55_09635 PF00535 Glycosyl transferase family 2 HVW55_09640 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_09645 PF13439 Glycosyltransferase Family 4 HVW55_09645 PF00534 Glycosyl transferases group 1 HVW55_09655 PF00535 Glycosyl transferase family 2 HVW55_09660 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_09665 PF16363 GDP-mannose 4,6 dehydratase HVW55_09670 PF01370 NAD dependent epimerase/dehydratase family HVW55_09675 PF00293 NUDIX domain HVW55_09680 PF13579 Glycosyl transferase 4-like domain HVW55_09680 PF00534 Glycosyl transferases group 1 HVW55_09685 PF00483 Nucleotidyl transferase HVW55_09685 PF01050 Mannose-6-phosphate isomerase HVW55_09690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HVW55_09690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HVW55_09690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HVW55_09690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HVW55_09695 PF02397 Bacterial sugar transferase HVW55_09705 PF04230 Polysaccharide pyruvyl transferase HVW55_09710 PF13439 Glycosyltransferase Family 4 HVW55_09710 PF00534 Glycosyl transferases group 1 HVW55_09720 PF00483 Nucleotidyl transferase HVW55_09730 PF00535 Glycosyl transferase family 2 HVW55_09740 PF13439 Glycosyltransferase Family 4 HVW55_09740 PF00534 Glycosyl transferases group 1 HVW55_09750 PF00534 Glycosyl transferases group 1 HVW55_09750 PF13439 Glycosyltransferase Family 4 HVW55_09755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HVW55_09755 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HVW55_09760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HVW55_09760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HVW55_09760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HVW55_09765 PF01370 NAD dependent epimerase/dehydratase family HVW55_09775 PF02706 Chain length determinant protein HVW55_09780 PF01502 Phosphoribosyl-AMP cyclohydrolase HVW55_09780 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HVW55_09785 PF00977 Histidine biosynthesis protein HVW55_09790 PF00977 Histidine biosynthesis protein HVW55_09795 PF00117 Glutamine amidotransferase class-I HVW55_09800 PF00475 Imidazoleglycerol-phosphate dehydratase HVW55_09800 PF08645 Polynucleotide kinase 3 phosphatase HVW55_09805 PF00155 Aminotransferase class I and II HVW55_09810 PF00815 Histidinol dehydrogenase HVW55_09815 PF08029 HisG, C-terminal domain HVW55_09815 PF01634 ATP phosphoribosyltransferase HVW55_09825 PF01370 NAD dependent epimerase/dehydratase family HVW55_09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_09830 PF03466 LysR substrate binding domain HVW55_09840 PF13520 Amino acid permease HVW55_09845 PF04143 Sulphur transport HVW55_09850 PF01206 Sulfurtransferase TusA HVW55_09855 PF08411 Exonuclease C-terminal HVW55_09855 PF00929 Exonuclease HVW55_09860 PF00768 D-alanyl-D-alanine carboxypeptidase HVW55_09860 PF07943 Penicillin-binding protein 5, C-terminal domain HVW55_09865 PF06445 GyrI-like small molecule binding domain HVW55_09870 PF04632 Fusaric acid resistance protein family HVW55_09875 PF04363 Protein of unknown function (DUF496) HVW55_09880 PF10662 Ethanolamine utilisation - propanediol utilisation HVW55_09885 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HVW55_09890 PF02654 Cobalamin-5-phosphate synthase HVW55_09895 PF02277 Phosphoribosyltransferase HVW55_09900 PF17969 L,D-transpeptidase C-terminal domain HVW55_09900 PF03734 L,D-transpeptidase catalytic domain HVW55_09910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_09910 PF03466 LysR substrate binding domain HVW55_09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_09915 PF03466 LysR substrate binding domain HVW55_09925 PF01554 MatE HVW55_09935 PF01709 Transcriptional regulator HVW55_09940 PF01048 Phosphorylase superfamily HVW55_09940 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus HVW55_09945 PF07690 Major Facilitator Superfamily HVW55_09945 PF00083 Sugar (and other) transporter HVW55_09955 PF09134 Invasin, domain 3 HVW55_09955 PF02369 Bacterial Ig-like domain (group 1) HVW55_09955 PF11924 Inverse autotransporter, beta-domain HVW55_09965 PF06167 Glucose-regulated metallo-peptidase M90 HVW55_09975 PF01292 Prokaryotic cytochrome b561 HVW55_09980 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HVW55_09985 PF01794 Ferric reductase like transmembrane component HVW55_09990 PF00174 Oxidoreductase molybdopterin binding domain HVW55_09995 PF00576 HIUase/Transthyretin family HVW55_10000 PF00072 Response regulator receiver domain HVW55_10000 PF00486 Transcriptional regulatory protein, C terminal HVW55_10005 PF00512 His Kinase A (phospho-acceptor) domain HVW55_10005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_10020 PF00267 Gram-negative porin HVW55_10030 PF01966 HD domain HVW55_10035 PF00145 C-5 cytosine-specific DNA methylase HVW55_10035 PF18284 DNA methylase N-terminal domain HVW55_10040 PF03852 DNA mismatch endonuclease Vsr HVW55_10045 PF00892 EamA-like transporter family HVW55_10050 PF05661 Protein of unknown function (DUF808) HVW55_10055 PF09926 Uncharacterized small protein (DUF2158) HVW55_10060 PF00990 Diguanylate cyclase, GGDEF domain HVW55_10060 PF17151 Periplasmic sensor domain HVW55_10070 PF10733 Protein of unknown function (DUF2525) HVW55_10075 PF10781 Dextransucrase DSRB HVW55_10080 PF00196 Bacterial regulatory proteins, luxR family HVW55_10085 PF01311 Bacterial export proteins, family 1 HVW55_10090 PF01313 Bacterial export proteins, family 3 HVW55_10095 PF00813 FliP family HVW55_10100 PF04347 Flagellar biosynthesis protein, FliO HVW55_10105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HVW55_10105 PF16973 Flagellar motor switch protein FliN N-terminal HVW55_10110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HVW55_10110 PF02154 Flagellar motor switch protein FliM HVW55_10115 PF03748 Flagellar basal body-associated protein FliL HVW55_10120 PF02120 Flagellar hook-length control protein FliK HVW55_10125 PF02050 Flagellar FliJ protein HVW55_10130 PF18269 T3SS EscN ATPase C-terminal domain HVW55_10130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HVW55_10135 PF02108 Flagellar assembly protein FliH HVW55_10140 PF14841 FliG middle domain HVW55_10140 PF14842 FliG N-terminal domain HVW55_10140 PF01706 FliG C-terminal domain HVW55_10145 PF08345 Flagellar M-ring protein C-terminal HVW55_10145 PF01514 Secretory protein of YscJ/FliF family HVW55_10150 PF02049 Flagellar hook-basal body complex protein FliE HVW55_10155 PF17607 Family of unknown function (DUF5503) HVW55_10160 PF00583 Acetyltransferase (GNAT) family HVW55_10165 PF02586 SOS response associated peptidase (SRAP) HVW55_10170 PF01206 Sulfurtransferase TusA HVW55_10175 PF04143 Sulphur transport HVW55_10180 PF13987 YedD-like protein HVW55_10185 PF00128 Alpha amylase, catalytic domain HVW55_10185 PF02806 Alpha amylase, C-terminal all-beta domain HVW55_10190 PF05400 Flagellar protein FliT HVW55_10195 PF02561 Flagellar protein FliS HVW55_10200 PF07195 Flagellar hook-associated protein 2 C-terminus HVW55_10200 PF02465 Flagellar hook-associated protein 2 N-terminus HVW55_10205 PF00700 Bacterial flagellin C-terminal helical region HVW55_10205 PF00669 Bacterial flagellin N-terminal helical region HVW55_10205 PF12445 Flagellin protein HVW55_10210 PF04545 Sigma-70, region 4 HVW55_10210 PF04539 Sigma-70 region 3 HVW55_10210 PF04542 Sigma-70 region 2 HVW55_10215 PF02899 Phage integrase, N-terminal SAM-like domain HVW55_10225 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_10240 PF00196 Bacterial regulatory proteins, luxR family HVW55_10240 PF03472 Autoinducer binding domain HVW55_10245 PF10769 Protein of unknown function (DUF2594) HVW55_10255 PF00196 Bacterial regulatory proteins, luxR family HVW55_10255 PF00072 Response regulator receiver domain HVW55_10260 PF02151 UvrB/uvrC motif HVW55_10260 PF01541 GIY-YIG catalytic domain HVW55_10260 PF08459 UvrC Helix-hairpin-helix N-terminal HVW55_10265 PF01066 CDP-alcohol phosphatidyltransferase HVW55_10285 PF03695 Uncharacterised protein family (UPF0149) HVW55_10285 PF02810 SEC-C motif HVW55_10290 PF03222 Tryptophan/tyrosine permease family HVW55_10295 PF10678 Protein of unknown function (DUF2492) HVW55_10300 PF00210 Ferritin-like domain HVW55_10305 PF13992 YecR-like lipoprotein HVW55_10315 PF10964 Protein of unknown function (DUF2766) HVW55_10320 PF00210 Ferritin-like domain HVW55_10325 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_10330 PF00005 ABC transporter HVW55_10335 PF02653 Branched-chain amino acid transport system / permease component HVW55_10340 PF02358 Trehalose-phosphatase HVW55_10345 PF00982 Glycosyltransferase family 20 HVW55_10350 PF00582 Universal stress protein family HVW55_10355 PF05247 Flagellar transcriptional activator (FlhD) HVW55_10360 PF05280 Flagellar transcriptional activator (FlhC) HVW55_10365 PF01618 MotA/TolQ/ExbB proton channel family HVW55_10370 PF00691 OmpA family HVW55_10370 PF13677 Membrane MotB of proton-channel complex MotA/MotB HVW55_10375 PF01584 CheW-like domain HVW55_10375 PF02895 Signal transducing histidine kinase, homodimeric domain HVW55_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_10375 PF01627 Hpt domain HVW55_10375 PF09078 CheY binding HVW55_10380 PF01584 CheW-like domain HVW55_10385 PF00672 HAMP domain HVW55_10385 PF02203 Tar ligand binding domain homologue HVW55_10385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HVW55_10390 PF02203 Tar ligand binding domain homologue HVW55_10390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HVW55_10390 PF00672 HAMP domain HVW55_10395 PF03705 CheR methyltransferase, all-alpha domain HVW55_10395 PF01739 CheR methyltransferase, SAM binding domain HVW55_10400 PF00072 Response regulator receiver domain HVW55_10400 PF01339 CheB methylesterase HVW55_10405 PF00072 Response regulator receiver domain HVW55_10410 PF04344 Chemotaxis phosphatase, CheZ HVW55_10420 PF01966 HD domain HVW55_10420 PF13286 Phosphohydrolase-associated domain HVW55_10425 PF01312 FlhB HrpN YscU SpaS Family HVW55_10430 PF00771 FHIPEP family HVW55_10435 PF06366 Flagellar protein FlhE HVW55_10440 PF07007 Lysozyme inhibitor LprI HVW55_10445 PF03485 Arginyl tRNA synthetase N terminal domain HVW55_10445 PF00750 tRNA synthetases class I (R) HVW55_10445 PF05746 DALR anticodon binding domain HVW55_10450 PF06185 YecM protein HVW55_10455 PF03932 CutC family HVW55_10460 PF03264 NapC/NirT cytochrome c family, N-terminal region HVW55_10465 PF01568 Molydopterin dinucleotide binding domain HVW55_10465 PF18364 Molybdopterin oxidoreductase N-terminal domain HVW55_10465 PF00384 Molybdopterin oxidoreductase HVW55_10470 PF08003 Protein of unknown function (DUF1698) HVW55_10475 PF13649 Methyltransferase domain HVW55_10480 PF01124 MAPEG family HVW55_10485 PF01904 Protein of unknown function DUF72 HVW55_10490 PF00857 Isochorismatase family HVW55_10495 PF02938 GAD domain HVW55_10495 PF00152 tRNA synthetases class II (D, K and N) HVW55_10495 PF01336 OB-fold nucleic acid binding domain HVW55_10500 PF00293 NUDIX domain HVW55_10505 PF01709 Transcriptional regulator HVW55_10510 PF02075 Crossover junction endodeoxyribonuclease RuvC HVW55_10515 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family HVW55_10525 PF07499 RuvA, C-terminal domain HVW55_10525 PF01330 RuvA N terminal domain HVW55_10530 PF17864 RuvB AAA lid domain HVW55_10530 PF05496 Holliday junction DNA helicase RuvB P-loop domain HVW55_10530 PF05491 RuvB C-terminal winged helix domain HVW55_10535 PF00950 ABC 3 transport family HVW55_10540 PF00005 ABC transporter HVW55_10545 PF01297 Zinc-uptake complex component A periplasmic HVW55_10550 PF01551 Peptidase family M23 HVW55_10550 PF08525 Opacity-associated protein A N-terminal motif HVW55_10550 PF01476 LysM domain HVW55_10555 PF03279 Bacterial lipid A biosynthesis acyltransferase HVW55_10560 PF00224 Pyruvate kinase, barrel domain HVW55_10560 PF02887 Pyruvate kinase, alpha/beta domain HVW55_10565 PF01418 Helix-turn-helix domain, rpiR family HVW55_10565 PF01380 SIS domain HVW55_10570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HVW55_10570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HVW55_10575 PF00920 Dehydratase family HVW55_10580 PF01081 KDPG and KHG aldolase HVW55_10585 PF02222 ATP-grasp domain HVW55_10590 PF07130 YebG protein HVW55_10595 PF13995 YebF-like protein HVW55_10600 PF04391 Protein of unknown function (DUF533) HVW55_10605 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HVW55_10605 PF00326 Prolyl oligopeptidase family HVW55_10610 PF00929 Exonuclease HVW55_10615 PF00795 Carbon-nitrogen hydrolase HVW55_10620 PF06440 DNA polymerase III, theta subunit HVW55_10625 PF04234 CopC domain HVW55_10630 PF05425 Copper resistance protein D HVW55_10635 PF10709 Protein of unknown function (DUF2511) HVW55_10640 PF00149 Calcineurin-like phosphoesterase HVW55_10645 PF07358 Protein of unknown function (DUF1482) HVW55_10650 PF07351 Protein of unknown function (DUF1480) HVW55_10655 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HVW55_10655 PF01189 16S rRNA methyltransferase RsmB/F HVW55_10655 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HVW55_10660 PF02470 MlaD protein HVW55_10665 PF04403 Paraquat-inducible protein A HVW55_10670 PF13185 GAF domain HVW55_10675 PF17516 ProQ C-terminal domain HVW55_10675 PF04352 ProQ/FINO family HVW55_10680 PF00595 PDZ domain HVW55_10680 PF17804 Tail specific protease N-terminal domain HVW55_10680 PF03572 Peptidase family S41 HVW55_10680 PF11818 C-terminal domain of tail specific protease (DUF3340) HVW55_10685 PF01435 Peptidase family M48 HVW55_10690 PF07690 Major Facilitator Superfamily HVW55_10695 PF01614 Bacterial transcriptional regulator HVW55_10695 PF09339 IclR helix-turn-helix domain HVW55_10700 PF13996 YobH-like protein HVW55_10705 PF13998 MgrB protein HVW55_10710 PF13974 YebO-like protein HVW55_10715 PF10736 Protein of unknown function (DUF2627) HVW55_10720 PF00313 'Cold-shock' DNA-binding domain HVW55_10725 PF13847 Methyltransferase domain HVW55_10730 PF02659 Putative manganese efflux pump HVW55_10735 PF06173 Protein of unknown function (DUF986) HVW55_10740 PF03613 PTS system mannose/fructose/sorbose family IID component HVW55_10745 PF03609 PTS system sorbose-specific iic component HVW55_10750 PF03830 PTS system sorbose subfamily IIB component HVW55_10750 PF03610 PTS system fructose IIA component HVW55_10755 PF03471 Transporter associated domain HVW55_10755 PF03741 Integral membrane protein TerC family HVW55_10760 PF00563 EAL domain HVW55_10760 PF12792 CSS motif domain associated with EAL HVW55_10765 PF03315 Serine dehydratase beta chain HVW55_10765 PF03313 Serine dehydratase alpha chain HVW55_10770 PF00293 NUDIX domain HVW55_10775 PF04715 Anthranilate synthase component I, N terminal region HVW55_10775 PF00425 chorismate binding enzyme HVW55_10780 PF03701 Uncharacterised protein family (UPF0181) HVW55_10785 PF08986 Domain of unknown function (DUF1889) HVW55_10790 PF01042 Endoribonuclease L-PSP HVW55_10795 PF13307 Helicase C-terminal domain HVW55_10795 PF04851 Type III restriction enzyme, res subunit HVW55_10800 PF00814 Glycoprotease family HVW55_10805 PF03843 Outer membrane lipoprotein Slp family HVW55_10810 PF00501 AMP-binding enzyme HVW55_10810 PF13193 AMP-binding enzyme C-terminal domain HVW55_10815 PF01612 3'-5' exonuclease HVW55_10815 PF00570 HRDC domain HVW55_10820 PF00970 Oxidoreductase FAD-binding domain HVW55_10820 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_10820 PF00175 Oxidoreductase NAD-binding domain HVW55_10825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HVW55_10825 PF00355 Rieske [2Fe-2S] domain HVW55_10830 PF02028 BCCT, betaine/carnitine/choline family transporter HVW55_10835 PF00180 Isocitrate/isopropylmalate dehydrogenase HVW55_10840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_10840 PF03466 LysR substrate binding domain HVW55_10845 PF01810 LysE type translocator HVW55_10850 PF09313 Domain of unknown function (DUF1971) HVW55_10855 PF08956 Domain of unknown function (DUF1869) HVW55_10860 PF04226 Transglycosylase associated protein HVW55_10875 PF13185 GAF domain HVW55_10875 PF00990 Diguanylate cyclase, GGDEF domain HVW55_10880 PF03891 Domain of unknown function (DUF333) HVW55_10885 PF04343 Protein of unknown function, DUF488 HVW55_10890 PF07690 Major Facilitator Superfamily HVW55_10895 PF12833 Helix-turn-helix domain HVW55_10895 PF02311 AraC-like ligand binding domain HVW55_10900 PF04284 Protein of unknown function (DUF441) HVW55_10910 PF04073 Aminoacyl-tRNA editing domain HVW55_10915 PF17155 Gammaproteobacterial periplasmic sensor domain HVW55_10915 PF00990 Diguanylate cyclase, GGDEF domain HVW55_10920 PF17158 Membrane-associated sensor, integral membrane domain HVW55_10920 PF00990 Diguanylate cyclase, GGDEF domain HVW55_10925 PF04285 Protein of unknown function (DUF444) HVW55_10930 PF06798 PrkA serine protein kinase C-terminal domain HVW55_10930 PF08298 PrkA AAA domain HVW55_10935 PF06629 MltA-interacting protein MipA HVW55_10940 PF00248 Aldo/keto reductase family HVW55_10945 PF01263 Aldose 1-epimerase HVW55_10950 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HVW55_10950 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HVW55_10955 PF01641 SelR domain HVW55_10960 PF07023 Protein of unknown function (DUF1315) HVW55_10965 PF00107 Zinc-binding dehydrogenase HVW55_10965 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_10970 PF00083 Sugar (and other) transporter HVW55_10975 PF00107 Zinc-binding dehydrogenase HVW55_10975 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_10980 PF01116 Fructose-bisphosphate aldolase class-II HVW55_10985 PF00294 pfkB family carbohydrate kinase HVW55_10990 PF00248 Aldo/keto reductase family HVW55_10995 PF08220 DeoR-like helix-turn-helix domain HVW55_10995 PF00455 DeoR C terminal sensor domain HVW55_11005 PF00857 Isochorismatase family HVW55_11010 PF17763 Glutaminase/Asparaginase C-terminal domain HVW55_11010 PF00710 Asparaginase, N-terminal HVW55_11020 PF01343 Peptidase family S49 HVW55_11025 PF00881 Nitroreductase family HVW55_11030 PF00586 AIR synthase related protein, N-terminal domain HVW55_11030 PF02769 AIR synthase related protein, C-terminal domain HVW55_11035 PF01131 DNA topoisomerase HVW55_11035 PF01751 Toprim domain HVW55_11040 PF06889 Protein of unknown function (DUF1266) HVW55_11045 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HVW55_11045 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HVW55_11050 PF07383 Protein of unknown function (DUF1496) HVW55_11055 PF00293 NUDIX domain HVW55_11060 PF01066 CDP-alcohol phosphatidyltransferase HVW55_11065 PF00581 Rhodanese-like domain HVW55_11070 PF00005 ABC transporter HVW55_11075 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_11080 PF13416 Bacterial extracellular solute-binding protein HVW55_11085 PF02627 Carboxymuconolactone decarboxylase family HVW55_11090 PF09335 SNARE associated Golgi protein HVW55_11100 PF09335 SNARE associated Golgi protein HVW55_11105 PF03372 Endonuclease/Exonuclease/phosphatase family HVW55_11110 PF00202 Aminotransferase class-III HVW55_11115 PF04958 Arginine N-succinyltransferase beta subunit HVW55_11120 PF00171 Aldehyde dehydrogenase family HVW55_11125 PF04996 Succinylarginine dihydrolase HVW55_11130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HVW55_11135 PF07813 LTXXQ motif family protein HVW55_11140 PF05962 HutD HVW55_11150 PF02540 NAD synthase HVW55_11155 PF04355 SmpA / OmlA family HVW55_11160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_11165 PF02378 Phosphotransferase system, EIIC HVW55_11170 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HVW55_11175 PF12833 Helix-turn-helix domain HVW55_11175 PF07883 Cupin domain HVW55_11180 PF02056 Family 4 glycosyl hydrolase HVW55_11180 PF11975 Family 4 glycosyl hydrolase C-terminal domain HVW55_11185 PF04794 YdjC-like protein HVW55_11190 PF18011 C-terminal domain found in long catalases HVW55_11190 PF06628 Catalase-related immune-responsive HVW55_11190 PF00199 Catalase HVW55_11195 PF10729 Cell division activator CedA HVW55_11210 PF04307 LexA-binding, inner membrane-associated putative hydrolase HVW55_11215 PF13419 Haloacid dehalogenase-like hydrolase HVW55_11220 PF14002 YniB-like protein HVW55_11225 PF03881 Fructosamine kinase HVW55_11230 PF11080 Endoribonuclease GhoS HVW55_11235 PF00294 pfkB family carbohydrate kinase HVW55_11240 PF04338 Protein of unknown function, DUF481 HVW55_11255 PF03129 Anticodon binding domain HVW55_11255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HVW55_11255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HVW55_11255 PF02824 TGS domain HVW55_11260 PF00707 Translation initiation factor IF-3, C-terminal domain HVW55_11260 PF05198 Translation initiation factor IF-3, N-terminal domain HVW55_11265 PF01632 Ribosomal protein L35 HVW55_11270 PF00453 Ribosomal protein L20 HVW55_11280 PF01409 tRNA synthetases class II core domain (F) HVW55_11280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HVW55_11285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HVW55_11285 PF03484 tRNA synthetase B5 domain HVW55_11285 PF01588 Putative tRNA binding domain HVW55_11285 PF03483 B3/4 domain HVW55_11285 PF03147 Ferredoxin-fold anticodon binding domain HVW55_11290 PF00216 Bacterial DNA-binding protein HVW55_11295 PF01032 FecCD transport family HVW55_11300 PF00255 Glutathione peroxidase HVW55_11305 PF00005 ABC transporter HVW55_11310 PF00877 NlpC/P60 family HVW55_11315 PF00563 EAL domain HVW55_11320 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HVW55_11325 PF10636 Hemin uptake protein hemP HVW55_11330 PF00793 DAHP synthetase I family HVW55_11335 PF03618 Kinase/pyrophosphorylase HVW55_11340 PF00391 PEP-utilising enzyme, mobile domain HVW55_11340 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HVW55_11340 PF02896 PEP-utilising enzyme, TIM barrel domain HVW55_11345 PF00939 Sodium:sulfate symporter transmembrane region HVW55_11350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HVW55_11350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HVW55_11365 PF13193 AMP-binding enzyme C-terminal domain HVW55_11365 PF00501 AMP-binding enzyme HVW55_11375 PF01494 FAD binding domain HVW55_11380 PF01012 Electron transfer flavoprotein domain HVW55_11380 PF00766 Electron transfer flavoprotein FAD-binding domain HVW55_11385 PF01012 Electron transfer flavoprotein domain HVW55_11390 PF12833 Helix-turn-helix domain HVW55_11390 PF02311 AraC-like ligand binding domain HVW55_11395 PF02770 Acyl-CoA dehydrogenase, middle domain HVW55_11395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HVW55_11395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HVW55_11400 PF01144 Coenzyme A transferase HVW55_11405 PF01487 Type I 3-dehydroquinase HVW55_11410 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HVW55_11410 PF08501 Shikimate dehydrogenase substrate binding domain HVW55_11415 PF07690 Major Facilitator Superfamily HVW55_11420 PF07690 Major Facilitator Superfamily HVW55_11425 PF08965 Domain of unknown function (DUF1870) HVW55_11435 PF01594 AI-2E family transporter HVW55_11440 PF13183 4Fe-4S dicluster domain HVW55_11440 PF01565 FAD binding domain HVW55_11440 PF02913 FAD linked oxidases, C-terminal domain HVW55_11445 PF03061 Thioesterase superfamily HVW55_11450 PF15930 Domain of unknown function HVW55_11455 PF01521 Iron-sulphur cluster biosynthesis HVW55_11460 PF01458 Uncharacterized protein family (UPF0051) HVW55_11465 PF00005 ABC transporter HVW55_11470 PF01458 Uncharacterized protein family (UPF0051) HVW55_11475 PF00266 Aminotransferase class-V HVW55_11480 PF02657 Fe-S metabolism associated domain HVW55_11485 PF17969 L,D-transpeptidase C-terminal domain HVW55_11485 PF03734 L,D-transpeptidase catalytic domain HVW55_11485 PF01476 LysM domain HVW55_11490 PF04728 Lipoprotein leucine-zipper HVW55_11495 PF02887 Pyruvate kinase, alpha/beta domain HVW55_11495 PF00224 Pyruvate kinase, barrel domain HVW55_11500 PF10965 Protein of unknown function (DUF2767) HVW55_11505 PF12800 4Fe-4S binding domain HVW55_11505 PF13247 4Fe-4S dicluster domain HVW55_11510 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HVW55_11510 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain HVW55_11520 PF13247 4Fe-4S dicluster domain HVW55_11525 PF01292 Prokaryotic cytochrome b561 HVW55_11535 PF13454 FAD-NAD(P)-binding HVW55_11540 PF08803 Putative mono-oxygenase ydhR HVW55_11555 PF03212 Pertactin HVW55_11555 PF16168 Adhesin of bacterial autotransporter system, probable stalk HVW55_11560 PF01554 MatE HVW55_11565 PF00677 Lumazine binding domain HVW55_11575 PF07690 Major Facilitator Superfamily HVW55_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_11580 PF03466 LysR substrate binding domain HVW55_11585 PF00356 Bacterial regulatory proteins, lacI family HVW55_11595 PF07690 Major Facilitator Superfamily HVW55_11600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HVW55_11600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HVW55_11605 PF00877 NlpC/P60 family HVW55_11610 PF00462 Glutaredoxin HVW55_11615 PF00270 DEAD/DEAH box helicase HVW55_11615 PF08494 DEAD/H associated HVW55_11615 PF00271 Helicase conserved C-terminal domain HVW55_11620 PF00929 Exonuclease HVW55_11625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HVW55_11630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HVW55_11635 PF00440 Bacterial regulatory proteins, tetR family HVW55_11635 PF16925 Tetracyclin repressor-like, C-terminal domain HVW55_11640 PF06945 Protein of unknown function (DUF1289) HVW55_11645 PF00248 Aldo/keto reductase family HVW55_11650 PF00080 Copper/zinc superoxide dismutase (SODC) HVW55_11655 PF04632 Fusaric acid resistance protein family HVW55_11660 PF00529 HlyD membrane-fusion protein of T1SS HVW55_11660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_11665 PF07869 Protein of unknown function (DUF1656) HVW55_11670 PF01047 MarR family HVW55_11675 PF05433 Glycine zipper 2TM domain HVW55_11680 PF03702 Anhydro-N-acetylmuramic acid kinase HVW55_11685 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme HVW55_11690 PF01243 Pyridoxamine 5'-phosphate oxidase HVW55_11690 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HVW55_11695 PF00579 tRNA synthetases class I (W and Y) HVW55_11695 PF01479 S4 domain HVW55_11700 PF08543 Phosphomethylpyrimidine kinase HVW55_11705 PF00043 Glutathione S-transferase, C-terminal domain HVW55_11705 PF02798 Glutathione S-transferase, N-terminal domain HVW55_11710 PF00854 POT family HVW55_11715 PF00633 Helix-hairpin-helix motif HVW55_11715 PF10576 Iron-sulfur binding domain of endonuclease III HVW55_11715 PF00730 HhH-GPD superfamily base excision DNA repair protein HVW55_11720 PF02508 Rnf-Nqr subunit, membrane protein HVW55_11725 PF04205 FMN-binding domain HVW55_11730 PF03116 NQR2, RnfD, RnfE family HVW55_11735 PF10531 SLBB domain HVW55_11735 PF12838 4Fe-4S dicluster domain HVW55_11735 PF13375 RnfC Barrel sandwich hybrid domain HVW55_11735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HVW55_11740 PF04060 Putative Fe-S cluster HVW55_11745 PF02508 Rnf-Nqr subunit, membrane protein HVW55_11750 PF10754 Protein of unknown function (DUF2569) HVW55_11755 PF05321 Haemolysin expression modulating protein HVW55_11770 PF00962 Adenosine/AMP deaminase HVW55_11775 PF00155 Aminotransferase class I and II HVW55_11780 PF02378 Phosphotransferase system, EIIC HVW55_11780 PF00367 phosphotransferase system, EIIB HVW55_11785 PF00356 Bacterial regulatory proteins, lacI family HVW55_11785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_11795 PF00440 Bacterial regulatory proteins, tetR family HVW55_11800 PF02837 Glycosyl hydrolases family 2, sugar binding domain HVW55_11800 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HVW55_11800 PF00703 Glycosyl hydrolases family 2 HVW55_11810 PF03573 outer membrane porin, OprD family HVW55_11815 PF06097 Bacterial protein of unknown function (DUF945) HVW55_11820 PF01238 Phosphomannose isomerase type I HVW55_11825 PF05683 Fumarase C-terminus HVW55_11825 PF05681 Fumarate hydratase (Fumerase) HVW55_11830 PF10415 Fumarase C C-terminus HVW55_11830 PF00206 Lyase HVW55_11835 PF05472 DNA replication terminus site-binding protein (Ter protein) HVW55_11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_11840 PF00512 His Kinase A (phospho-acceptor) domain HVW55_11840 PF00672 HAMP domain HVW55_11845 PF00486 Transcriptional regulatory protein, C terminal HVW55_11845 PF00072 Response regulator receiver domain HVW55_11850 PF06942 GlpM protein HVW55_11860 PF13520 Amino acid permease HVW55_11865 PF07338 Protein of unknown function (DUF1471) HVW55_11870 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HVW55_11870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HVW55_11870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HVW55_11875 PF02233 NAD(P) transhydrogenase beta subunit HVW55_11880 PF01594 AI-2E family transporter HVW55_11885 PF00893 Small Multidrug Resistance protein HVW55_11890 PF00893 Small Multidrug Resistance protein HVW55_11895 PF00089 Trypsin HVW55_11910 PF07690 Major Facilitator Superfamily HVW55_11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_11915 PF03466 LysR substrate binding domain HVW55_11920 PF00480 ROK family HVW55_11930 PF00654 Voltage gated chloride channel HVW55_11935 PF02613 Nitrate reductase delta subunit HVW55_11940 PF04976 DMSO reductase anchor subunit (DmsC) HVW55_11945 PF12800 4Fe-4S binding domain HVW55_11945 PF13247 4Fe-4S dicluster domain HVW55_11950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HVW55_11950 PF01568 Molydopterin dinucleotide binding domain HVW55_11950 PF00384 Molybdopterin oxidoreductase HVW55_11955 PF00384 Molybdopterin oxidoreductase HVW55_11955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HVW55_11955 PF01568 Molydopterin dinucleotide binding domain HVW55_11960 PF06649 Protein of unknown function (DUF1161) HVW55_11965 PF06788 Uncharacterised protein family (UPF0257) HVW55_11970 PF13302 Acetyltransferase (GNAT) domain HVW55_11975 PF06932 Protein of unknown function (DUF1283) HVW55_11980 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HVW55_11985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HVW55_11985 PF13378 Enolase C-terminal domain-like HVW55_11990 PF00107 Zinc-binding dehydrogenase HVW55_11990 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_12000 PF12167 Arm DNA-binding domain HVW55_12000 PF00589 Phage integrase family HVW55_12010 PF00665 Integrase core domain HVW55_12010 PF01527 Transposase HVW55_12010 PF13276 HTH-like domain HVW55_12015 PF05717 IS66 Orf2 like protein HVW55_12020 PF13817 IS66 C-terminal element HVW55_12020 PF03050 Transposase IS66 family HVW55_12020 PF13007 Transposase C of IS166 homeodomain HVW55_12020 PF13005 zinc-finger binding domain of transposase IS66 HVW55_12035 PF07358 Protein of unknown function (DUF1482) HVW55_12040 PF05358 DicB protein HVW55_12050 PF07151 Protein of unknown function (DUF1391) HVW55_12055 PF01381 Helix-turn-helix HVW55_12095 PF14282 FlxA-like protein HVW55_12105 PF04221 RelB antitoxin HVW55_12110 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HVW55_12115 PF01848 Hok/gef family HVW55_12130 PF06147 Protein of unknown function (DUF968) HVW55_12135 PF03589 Antitermination protein HVW55_12145 PF00313 'Cold-shock' DNA-binding domain HVW55_12150 PF00313 'Cold-shock' DNA-binding domain HVW55_12155 PF04971 Bacteriophage P21 holin S HVW55_12160 PF07041 Protein of unknown function (DUF1327) HVW55_12165 PF00959 Phage lysozyme HVW55_12170 PF10721 Protein of unknown function (DUF2514) HVW55_12175 PF00313 'Cold-shock' DNA-binding domain HVW55_12195 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system HVW55_12200 PF07166 Protein of unknown function (DUF1398) HVW55_12205 PF13132 Domain of unknown function (DUF3950) HVW55_12210 PF07471 Phage DNA packaging protein Nu1 HVW55_12215 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_12220 PF02831 gpW HVW55_12230 PF01972 Serine dehydrogenase proteinase HVW55_12230 PF01957 NfeD-like C-terminal, partner-binding HVW55_12240 PF03864 Phage major capsid protein E HVW55_12280 PF06791 Prophage tail length tape measure protein HVW55_12315 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_12320 PF02796 Helix-turn-helix domain of resolvase HVW55_12320 PF00239 Resolvase, N terminal domain HVW55_12340 PF01232 Mannitol dehydrogenase Rossmann domain HVW55_12340 PF08125 Mannitol dehydrogenase C-terminal domain HVW55_12345 PF14001 YdfZ protein HVW55_12350 PF00392 Bacterial regulatory proteins, gntR family HVW55_12350 PF07729 FCD domain HVW55_12355 PF00106 short chain dehydrogenase HVW55_12360 PF01432 Peptidase family M3 HVW55_12365 PF02464 Competence-damaged protein HVW55_12370 PF04076 Bacterial OB fold (BOF) protein HVW55_12385 PF07690 Major Facilitator Superfamily HVW55_12390 PF00892 EamA-like transporter family HVW55_12395 PF07702 UTRA domain HVW55_12395 PF00392 Bacterial regulatory proteins, gntR family HVW55_12400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_12405 PF02378 Phosphotransferase system, EIIC HVW55_12410 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HVW55_12415 PF11471 Maltoporin periplasmic N-terminal extension HVW55_12415 PF02264 LamB porin HVW55_12420 PF00232 Glycosyl hydrolase family 1 HVW55_12425 PF13999 MarB protein HVW55_12430 PF12833 Helix-turn-helix domain HVW55_12435 PF01047 MarR family HVW55_12455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_12455 PF03466 LysR substrate binding domain HVW55_12460 PF00171 Aldehyde dehydrogenase family HVW55_12465 PF04960 Glutaminase HVW55_12470 PF13811 Domain of unknown function (DUF4186) HVW55_12475 PF00990 Diguanylate cyclase, GGDEF domain HVW55_12480 PF08125 Mannitol dehydrogenase C-terminal domain HVW55_12480 PF01232 Mannitol dehydrogenase Rossmann domain HVW55_12485 PF01062 Bestrophin, RFP-TM, chloride channel HVW55_12490 PF13649 Methyltransferase domain HVW55_12495 PF03992 Antibiotic biosynthesis monooxygenase HVW55_12500 PF01791 DeoC/LacD family aldolase HVW55_12505 PF13407 Periplasmic binding protein domain HVW55_12510 PF02653 Branched-chain amino acid transport system / permease component HVW55_12515 PF02653 Branched-chain amino acid transport system / permease component HVW55_12520 PF00005 ABC transporter HVW55_12525 PF04198 Putative sugar-binding domain HVW55_12530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HVW55_12530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_12540 PF13018 Extended Signal Peptide of Type V secretion system HVW55_12545 PF01381 Helix-turn-helix HVW55_12550 PF07804 HipA-like C-terminal domain HVW55_12550 PF13657 HipA N-terminal domain HVW55_12560 PF00419 Fimbrial protein HVW55_12565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_12565 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_12570 PF00577 Outer membrane usher protein HVW55_12570 PF13954 PapC N-terminal domain HVW55_12570 PF13953 PapC C-terminal domain HVW55_12575 PF00419 Fimbrial protein HVW55_12580 PF00419 Fimbrial protein HVW55_12585 PF09160 FimH, mannose binding HVW55_12590 PF00384 Molybdopterin oxidoreductase HVW55_12595 PF17073 Two-component-system connector protein HVW55_12600 PF12833 Helix-turn-helix domain HVW55_12605 PF00884 Sulfatase HVW55_12610 PF04055 Radical SAM superfamily HVW55_12610 PF13186 Iron-sulfur cluster-binding domain HVW55_12620 PF00005 ABC transporter HVW55_12620 PF06472 ABC transporter transmembrane region 2 HVW55_12625 PF07715 TonB-dependent Receptor Plug Domain HVW55_12630 PF00675 Insulinase (Peptidase family M16) HVW55_12630 PF05193 Peptidase M16 inactive domain HVW55_12635 PF00282 Pyridoxal-dependent decarboxylase conserved domain HVW55_12640 PF13520 Amino acid permease HVW55_12655 PF00990 Diguanylate cyclase, GGDEF domain HVW55_12660 PF13426 PAS domain HVW55_12660 PF00990 Diguanylate cyclase, GGDEF domain HVW55_12660 PF00563 EAL domain HVW55_12665 PF01427 D-ala-D-ala dipeptidase HVW55_12670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_12675 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_12680 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_12680 PF12911 N-terminal TM domain of oligopeptide transport permease C HVW55_12685 PF00005 ABC transporter HVW55_12685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_12690 PF00005 ABC transporter HVW55_12690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_12695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_12695 PF03466 LysR substrate binding domain HVW55_12700 PF01144 Coenzyme A transferase HVW55_12705 PF01144 Coenzyme A transferase HVW55_12710 PF00108 Thiolase, N-terminal domain HVW55_12710 PF02803 Thiolase, C-terminal domain HVW55_12715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HVW55_12715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HVW55_12725 PF00106 short chain dehydrogenase HVW55_12730 PF02566 OsmC-like protein HVW55_12735 PF10684 Putative biofilm-dependent modulation protein HVW55_12740 PF08136 30S ribosomal protein subunit S22 family HVW55_12745 PF00390 Malic enzyme, N-terminal domain HVW55_12745 PF03949 Malic enzyme, NAD binding domain HVW55_12750 PF00107 Zinc-binding dehydrogenase HVW55_12750 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_12755 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HVW55_12760 PF01381 Helix-turn-helix HVW55_12765 PF01292 Prokaryotic cytochrome b561 HVW55_12770 PF12800 4Fe-4S binding domain HVW55_12770 PF13247 4Fe-4S dicluster domain HVW55_12770 PF09163 Formate dehydrogenase N, transmembrane HVW55_12780 PF00892 EamA-like transporter family HVW55_12785 PF00267 Gram-negative porin HVW55_12800 PF07690 Major Facilitator Superfamily HVW55_12805 PF00384 Molybdopterin oxidoreductase HVW55_12805 PF01568 Molydopterin dinucleotide binding domain HVW55_12805 PF14710 Respiratory nitrate reductase alpha N-terminal HVW55_12810 PF13247 4Fe-4S dicluster domain HVW55_12810 PF14711 Respiratory nitrate reductase beta C-terminal HVW55_12815 PF02613 Nitrate reductase delta subunit HVW55_12820 PF02665 Nitrate reductase gamma subunit HVW55_12825 PF02567 Phenazine biosynthesis-like protein HVW55_12830 PF00797 N-acetyltransferase HVW55_12835 PF01613 Flavin reductase like domain HVW55_12840 PF01361 Tautomerase enzyme HVW55_12845 PF13808 DDE_Tnp_1-associated HVW55_12845 PF01609 Transposase DDE domain HVW55_12850 PF01348 Type II intron maturase HVW55_12850 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HVW55_12870 PF04717 Type VI secretion system, phage-baseplate injector HVW55_12875 PF17520 Family of unknown function (DUF5445) HVW55_12880 PF13417 Glutathione S-transferase, N-terminal domain HVW55_12885 PF00324 Amino acid permease HVW55_12895 PF00593 TonB dependent receptor HVW55_12895 PF07715 TonB-dependent Receptor Plug Domain HVW55_12900 PF07729 FCD domain HVW55_12900 PF00392 Bacterial regulatory proteins, gntR family HVW55_12905 PF00107 Zinc-binding dehydrogenase HVW55_12905 PF16884 N-terminal domain of oxidoreductase HVW55_12910 PF00583 Acetyltransferase (GNAT) family HVW55_12915 PF04657 Putative inner membrane exporter, YdcZ HVW55_12920 PF10735 Protein of unknown function (DUF2526) HVW55_12925 PF10753 Toxin GhoT_OrtT HVW55_12935 PF00171 Aldehyde dehydrogenase family HVW55_12940 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_12945 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_12950 PF00005 ABC transporter HVW55_12950 PF08402 TOBE domain HVW55_12955 PF13416 Bacterial extracellular solute-binding protein HVW55_12960 PF00392 Bacterial regulatory proteins, gntR family HVW55_12960 PF00155 Aminotransferase class I and II HVW55_12965 PF01381 Helix-turn-helix HVW55_12965 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system HVW55_12970 PF07927 HicA toxin of bacterial toxin-antitoxin, HVW55_12975 PF10829 Protein of unknown function (DUF2554) HVW55_12980 PF01136 Peptidase family U32 HVW55_12980 PF12392 Collagenase HVW55_12985 PF07883 Cupin domain HVW55_12985 PF01381 Helix-turn-helix HVW55_12990 PF03594 Benzoate membrane transport protein HVW55_12995 PF11769 Protein of unknown function (DUF3313) HVW55_13000 PF03848 Tellurite resistance protein TehB HVW55_13005 PF03595 Voltage-dependent anion channel HVW55_13010 PF18836 Beta solenoid repeat from YDCK HVW55_13015 PF13302 Acetyltransferase (GNAT) domain HVW55_13020 PF04325 Protein of unknown function (DUF465) HVW55_13025 PF04349 Periplasmic glucan biosynthesis protein, MdoG HVW55_13030 PF07063 Domain of unknown function (DUF1338) HVW55_13035 PF03466 LysR substrate binding domain HVW55_13035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_13040 PF02203 Tar ligand binding domain homologue HVW55_13040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HVW55_13040 PF00672 HAMP domain HVW55_13045 PF01848 Hok/gef family HVW55_13055 PF01292 Prokaryotic cytochrome b561 HVW55_13060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HVW55_13060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HVW55_13065 PF00171 Aldehyde dehydrogenase family HVW55_13070 PF02698 DUF218 domain HVW55_13075 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HVW55_13075 PF11898 Domain of unknown function (DUF3418) HVW55_13075 PF04408 Helicase associated domain (HA2) HVW55_13075 PF00270 DEAD/DEAH box helicase HVW55_13075 PF00271 Helicase conserved C-terminal domain HVW55_13080 PF02525 Flavodoxin-like fold HVW55_13085 PF00782 Dual specificity phosphatase, catalytic domain HVW55_13090 PF12147 Putative methyltransferase HVW55_13090 PF12146 Serine aminopeptidase, S33 HVW55_13105 PF10971 Protein of unknown function (DUF2773) HVW55_13110 PF00248 Aldo/keto reductase family HVW55_13115 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_13120 PF07848 PaaX-like protein HVW55_13120 PF08223 PaaX-like protein C-terminal domain HVW55_13125 PF00501 AMP-binding enzyme HVW55_13125 PF14535 AMP-binding enzyme C-terminal domain HVW55_13130 PF00108 Thiolase, N-terminal domain HVW55_13130 PF02803 Thiolase, C-terminal domain HVW55_13135 PF03061 Thioesterase superfamily HVW55_13140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HVW55_13140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HVW55_13140 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain HVW55_13145 PF00378 Enoyl-CoA hydratase/isomerase HVW55_13150 PF00378 Enoyl-CoA hydratase/isomerase HVW55_13155 PF00175 Oxidoreductase NAD-binding domain HVW55_13155 PF00970 Oxidoreductase FAD-binding domain HVW55_13155 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_13160 PF01883 Iron-sulfur cluster assembly protein HVW55_13165 PF05138 Phenylacetic acid catabolic protein HVW55_13170 PF06243 Phenylacetic acid degradation B HVW55_13175 PF05138 Phenylacetic acid catabolic protein HVW55_13180 PF01575 MaoC like domain HVW55_13180 PF00171 Aldehyde dehydrogenase family HVW55_13185 PF02728 Copper amine oxidase, N3 domain HVW55_13185 PF02727 Copper amine oxidase, N2 domain HVW55_13185 PF01179 Copper amine oxidase, enzyme domain HVW55_13185 PF07833 Copper amine oxidase N-terminal domain HVW55_13190 PF00171 Aldehyde dehydrogenase family HVW55_13195 PF14525 AraC-binding-like domain HVW55_13195 PF12833 Helix-turn-helix domain HVW55_13200 PF07027 Protein of unknown function (DUF1318) HVW55_13205 PF13617 YnbE-like lipoprotein HVW55_13210 PF11739 Dicarboxylate transport HVW55_13215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HVW55_13215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HVW55_13220 PF03724 META domain HVW55_13225 PF03891 Domain of unknown function (DUF333) HVW55_13230 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HVW55_13230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_13230 PF10371 Domain of unknown function HVW55_13230 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HVW55_13230 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HVW55_13235 PF00267 Gram-negative porin HVW55_13240 PF00582 Universal stress protein family HVW55_13260 PF02796 Helix-turn-helix domain of resolvase HVW55_13260 PF00239 Resolvase, N terminal domain HVW55_13265 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_13270 PF03335 Phage tail fibre repeat HVW55_13270 PF07484 Phage Tail Collar Domain HVW55_13270 PF08400 Prophage tail fibre N-terminal HVW55_13275 PF06316 Enterobacterial Ail/Lom protein HVW55_13305 PF06791 Prophage tail length tape measure protein HVW55_13385 PF02195 ParB-like nuclease domain HVW55_13390 PF02386 Cation transport protein HVW55_13395 PF06085 Lipoprotein Rz1 precursor HVW55_13400 PF00959 Phage lysozyme HVW55_13405 PF04971 Bacteriophage P21 holin S HVW55_13415 PF06519 TolA C-terminal HVW55_13425 PF07102 Protein of unknown function (DUF1364) HVW55_13435 PF01848 Hok/gef family HVW55_13455 PF07789 Protein of unknown function (DUF1627) HVW55_13460 PF01695 IstB-like ATP binding protein HVW55_13465 PF07120 Protein of unknown function (DUF1376) HVW55_13470 PF06254 Putative bacterial toxin ydaT HVW55_13475 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HVW55_13485 PF07151 Protein of unknown function (DUF1391) HVW55_13490 PF14163 Super-infection exclusion protein B HVW55_13500 PF04181 Rtr1/RPAP2 family HVW55_13510 PF06630 Enterobacterial exodeoxyribonuclease VIII HVW55_13510 PF12684 PDDEXK-like domain of unknown function (DUF3799) HVW55_13515 PF03837 RecT family HVW55_13525 PF06688 Protein of unknown function (DUF1187) HVW55_13530 PF06806 Putative excisionase (DUF1233) HVW55_13535 PF00589 Phage integrase family HVW55_13535 PF12167 Arm DNA-binding domain HVW55_13540 PF01171 PP-loop family HVW55_13545 PF00270 DEAD/DEAH box helicase HVW55_13545 PF03880 DbpA RNA binding domain HVW55_13545 PF00271 Helicase conserved C-terminal domain HVW55_13550 PF01544 CorA-like Mg2+ transporter protein HVW55_13555 PF00990 Diguanylate cyclase, GGDEF domain HVW55_13555 PF08448 PAS fold HVW55_13560 PF01713 Smr domain HVW55_13565 PF03466 LysR substrate binding domain HVW55_13565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_13570 PF01546 Peptidase family M20/M25/M40 HVW55_13570 PF07687 Peptidase dimerisation domain HVW55_13575 PF01546 Peptidase family M20/M25/M40 HVW55_13580 PF03806 AbgT putative transporter family HVW55_13585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HVW55_13585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HVW55_13590 PF00027 Cyclic nucleotide-binding domain HVW55_13590 PF00325 Bacterial regulatory proteins, crp family HVW55_13595 PF00582 Universal stress protein family HVW55_13600 PF10749 Protein of unknown function (DUF2534) HVW55_13605 PF00924 Mechanosensitive ion channel HVW55_13610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_13615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_13615 PF03466 LysR substrate binding domain HVW55_13620 PF12146 Serine aminopeptidase, S33 HVW55_13635 PF00246 Zinc carboxypeptidase HVW55_13640 PF13378 Enolase C-terminal domain-like HVW55_13640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HVW55_13645 PF08534 Redoxin HVW55_13650 PF18024 Helix-turn-helix domain HVW55_13650 PF00158 Sigma-54 interaction domain HVW55_13650 PF13188 PAS domain HVW55_13655 PF05128 Domain of unknown function (DUF697) HVW55_13660 PF04317 YcjX-like family, DUF463 HVW55_13665 PF00356 Bacterial regulatory proteins, lacI family HVW55_13665 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_13670 PF09381 Outer membrane protein G (OmpG) HVW55_13675 PF03459 TOBE domain HVW55_13675 PF00005 ABC transporter HVW55_13675 PF17912 MalK OB fold domain HVW55_13680 PF13419 Haloacid dehalogenase-like hydrolase HVW55_13685 PF03632 Glycosyl hydrolase family 65 central catalytic domain HVW55_13685 PF03636 Glycosyl hydrolase family 65, N-terminal domain HVW55_13685 PF03633 Glycosyl hydrolase family 65, C-terminal domain HVW55_13690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HVW55_13690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HVW55_13695 PF01261 Xylose isomerase-like TIM barrel HVW55_13700 PF00107 Zinc-binding dehydrogenase HVW55_13705 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_13710 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_13715 PF01547 Bacterial extracellular solute-binding protein HVW55_13720 PF00128 Alpha amylase, catalytic domain HVW55_13725 PF00581 Rhodanese-like domain HVW55_13730 PF09584 Phage shock protein PspD (Phageshock_PspD) HVW55_13735 PF04024 PspC domain HVW55_13740 PF06667 Phage shock protein B HVW55_13745 PF04012 PspA/IM30 family HVW55_13750 PF02954 Bacterial regulatory protein, Fis family HVW55_13750 PF00158 Sigma-54 interaction domain HVW55_13755 PF00202 Aminotransferase class-III HVW55_13760 PF01266 FAD dependent oxidoreductase HVW55_13765 PF00171 Aldehyde dehydrogenase family HVW55_13770 PF07883 Cupin domain HVW55_13770 PF01381 Helix-turn-helix HVW55_13775 PF07722 Peptidase C26 HVW55_13780 PF00120 Glutamine synthetase, catalytic domain HVW55_13790 PF00324 Amino acid permease HVW55_13795 PF10820 Protein of unknown function (DUF2543) HVW55_13800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_13805 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_13810 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_13810 PF12911 N-terminal TM domain of oligopeptide transport permease C HVW55_13815 PF00005 ABC transporter HVW55_13815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_13820 PF00005 ABC transporter HVW55_13825 PF07690 Major Facilitator Superfamily HVW55_13835 PF00873 AcrB/AcrD/AcrF family HVW55_13840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_13840 PF00529 HlyD membrane-fusion protein of T1SS HVW55_13845 PF16295 Tetracyclin repressor-like, C-terminal domain HVW55_13845 PF00440 Bacterial regulatory proteins, tetR family HVW55_13860 PF00575 S1 RNA binding domain HVW55_13860 PF00773 RNB domain HVW55_13860 PF08206 Ribonuclease B OB domain HVW55_13860 PF17876 Cold shock domain HVW55_13870 PF00990 Diguanylate cyclase, GGDEF domain HVW55_13870 PF13426 PAS domain HVW55_13870 PF00563 EAL domain HVW55_13880 PF00455 DeoR C terminal sensor domain HVW55_13880 PF08220 DeoR-like helix-turn-helix domain HVW55_13885 PF05433 Glycine zipper 2TM domain HVW55_13890 PF01253 Translation initiation factor SUI1 HVW55_13895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HVW55_13900 PF18073 Rubredoxin metal binding domain HVW55_13905 PF06305 Lipopolysaccharide assembly protein A domain HVW55_13910 PF01569 PAP2 superfamily HVW55_13915 PF00925 GTP cyclohydrolase II HVW55_13920 PF00330 Aconitase family (aconitate hydratase) HVW55_13920 PF00694 Aconitase C-terminal domain HVW55_13940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_13940 PF03466 LysR substrate binding domain HVW55_13945 PF01751 Toprim domain HVW55_13945 PF01131 DNA topoisomerase HVW55_13945 PF08272 Topoisomerase I zinc-ribbon-like HVW55_13945 PF01396 Topoisomerase DNA binding C4 zinc finger HVW55_13950 PF10692 Protein of unknown function (DUF2498) HVW55_13955 PF08496 Peptidase family S49 N-terminal HVW55_13955 PF01343 Peptidase family S49 HVW55_13960 PF00106 short chain dehydrogenase HVW55_13965 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HVW55_13965 PF12557 Cob(I)alamin adenosyltransferase N terminal HVW55_13970 PF01479 S4 domain HVW55_13970 PF00849 RNA pseudouridylate synthase HVW55_13975 PF09972 Predicted membrane protein (DUF2207) HVW55_13980 PF01300 Telomere recombination HVW55_13985 PF02811 PHP domain HVW55_13990 PF08255 Trp-operon Leader Peptide HVW55_13995 PF04715 Anthranilate synthase component I, N terminal region HVW55_13995 PF00425 chorismate binding enzyme HVW55_14000 PF00591 Glycosyl transferase family, a/b domain HVW55_14000 PF02885 Glycosyl transferase family, helical bundle domain HVW55_14000 PF00117 Glutamine amidotransferase class-I HVW55_14005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HVW55_14005 PF00218 Indole-3-glycerol phosphate synthase HVW55_14010 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_14015 PF00290 Tryptophan synthase alpha chain HVW55_14020 PF10685 Stress-induced bacterial acidophilic repeat motif HVW55_14025 PF05974 Domain of unknown function (DUF892) HVW55_14030 PF05974 Domain of unknown function (DUF892) HVW55_14035 PF03922 OmpW family HVW55_14050 PF04279 Intracellular septation protein A HVW55_14055 PF03061 Thioesterase superfamily HVW55_14060 PF03544 Gram-negative bacterial TonB protein C-terminal HVW55_14065 PF03795 YCII-related domain HVW55_14070 PF02254 TrkA-N domain HVW55_14070 PF07885 Ion channel HVW55_14080 PF13396 Phospholipase_D-nuclease N-terminal HVW55_14080 PF13091 PLD-like domain HVW55_14085 PF04269 Protein of unknown function, DUF440 HVW55_14090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_14090 PF00005 ABC transporter HVW55_14095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_14095 PF00005 ABC transporter HVW55_14100 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_14100 PF12911 N-terminal TM domain of oligopeptide transport permease C HVW55_14105 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_14110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_14115 PF01914 MarC family integral membrane protein HVW55_14120 PF00465 Iron-containing alcohol dehydrogenase HVW55_14120 PF00171 Aldehyde dehydrogenase family HVW55_14125 PF13006 Insertion element 4 transposase N-terminal HVW55_14125 PF01609 Transposase DDE domain HVW55_14130 PF00265 Thymidine kinase HVW55_14135 PF00816 H-NS histone family HVW55_14140 PF00483 Nucleotidyl transferase HVW55_14145 PF00072 Response regulator receiver domain HVW55_14150 PF01734 Patatin-like phospholipase HVW55_14155 PF02810 SEC-C motif HVW55_14160 PF00551 Formyl transferase HVW55_14160 PF01842 ACT domain HVW55_14190 PF02665 Nitrate reductase gamma subunit HVW55_14195 PF02613 Nitrate reductase delta subunit HVW55_14200 PF14711 Respiratory nitrate reductase beta C-terminal HVW55_14200 PF13247 4Fe-4S dicluster domain HVW55_14205 PF00384 Molybdopterin oxidoreductase HVW55_14205 PF14710 Respiratory nitrate reductase alpha N-terminal HVW55_14205 PF01568 Molydopterin dinucleotide binding domain HVW55_14210 PF07690 Major Facilitator Superfamily HVW55_14215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HVW55_14215 PF07730 Histidine kinase HVW55_14215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_14215 PF00672 HAMP domain HVW55_14220 PF00072 Response regulator receiver domain HVW55_14220 PF00196 Bacterial regulatory proteins, luxR family HVW55_14225 PF11924 Inverse autotransporter, beta-domain HVW55_14230 PF02635 DsrE/DsrF-like family HVW55_14235 PF04752 ChaC-like protein HVW55_14240 PF06150 ChaB HVW55_14245 PF01699 Sodium/calcium exchanger protein HVW55_14250 PF13940 Toxin Ldr, type I toxin-antitoxin system HVW55_14255 PF13940 Toxin Ldr, type I toxin-antitoxin system HVW55_14260 PF00793 DAHP synthetase I family HVW55_14265 PF13369 Transglutaminase-like superfamily HVW55_14270 PF04247 Invasion gene expression up-regulator, SirB HVW55_14275 PF13847 Methyltransferase domain HVW55_14275 PF17827 PrmC N-terminal domain HVW55_14280 PF00472 RF-1 domain HVW55_14280 PF03462 PCRF domain HVW55_14285 PF01488 Shikimate / quinate 5-dehydrogenase HVW55_14285 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HVW55_14285 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HVW55_14290 PF03550 Outer membrane lipoprotein LolB HVW55_14295 PF00288 GHMP kinases N terminal domain HVW55_14295 PF08544 GHMP kinases C terminal HVW55_14300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HVW55_14300 PF14572 Phosphoribosyl synthetase-associated domain HVW55_14305 PF01740 STAS domain HVW55_14305 PF00916 Sulfate permease family HVW55_14310 PF10762 Protein of unknown function (DUF2583) HVW55_14315 PF01195 Peptidyl-tRNA hydrolase HVW55_14320 PF06071 Protein of unknown function (DUF933) HVW55_14320 PF01926 50S ribosome-binding GTPase HVW55_14325 PF03797 Autotransporter beta-domain HVW55_14325 PF03212 Pertactin HVW55_14330 PF02954 Bacterial regulatory protein, Fis family HVW55_14330 PF00989 PAS fold HVW55_14330 PF00158 Sigma-54 interaction domain HVW55_14335 PF02733 Dak1 domain HVW55_14340 PF02734 DAK2 domain HVW55_14345 PF03610 PTS system fructose IIA component HVW55_14345 PF00381 PTS HPr component phosphorylation site HVW55_14345 PF00391 PEP-utilising enzyme, mobile domain HVW55_14345 PF05524 PEP-utilising enzyme, N-terminal HVW55_14350 PF01204 Trehalase HVW55_14365 PF00005 ABC transporter HVW55_14370 PF13649 Methyltransferase domain HVW55_14375 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HVW55_14375 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HVW55_14385 PF04226 Transglycosylase associated protein HVW55_14390 PF07317 Flagellar regulator YcgR HVW55_14390 PF07238 PilZ domain HVW55_14395 PF01464 Transglycosylase SLT domain HVW55_14400 PF17676 LD-carboxypeptidase C-terminal domain HVW55_14400 PF02016 LD-carboxypeptidase N-terminal domain HVW55_14405 PF02080 TrkA-C domain HVW55_14405 PF00999 Sodium/hydrogen exchanger family HVW55_14405 PF03471 Transporter associated domain HVW55_14420 PF00842 Alanine racemase, C-terminal domain HVW55_14420 PF01168 Alanine racemase, N-terminal domain HVW55_14425 PF01266 FAD dependent oxidoreductase HVW55_14430 PF04293 SpoVR like protein HVW55_14435 PF00392 Bacterial regulatory proteins, gntR family HVW55_14435 PF07840 FadR C-terminal domain HVW55_14440 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HVW55_14445 PF02600 Disulfide bond formation protein DsbB HVW55_14450 PF00817 impB/mucB/samB family HVW55_14450 PF11799 impB/mucB/samB family C-terminal domain HVW55_14450 PF11798 IMS family HHH motif HVW55_14450 PF13438 Domain of unknown function (DUF4113) HVW55_14455 PF00717 Peptidase S24-like HVW55_14460 PF06109 Haemolysin E (HlyE) HVW55_14465 PF03692 Putative zinc- or iron-chelating domain HVW55_14470 PF01557 Fumarylacetoacetate (FAA) hydrolase family HVW55_14475 PF05166 YcgL domain HVW55_14480 PF04151 Bacterial pre-peptidase C-terminal domain HVW55_14485 PF05666 Fels-1 Prophage Protein-like HVW55_14490 PF05209 Septum formation inhibitor MinC, N-terminal domain HVW55_14490 PF03775 Septum formation inhibitor MinC, C-terminal domain HVW55_14495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HVW55_14500 PF03776 Septum formation topological specificity factor MinE HVW55_14525 PF13436 Glycine-zipper domain HVW55_14530 PF16456 YmgD protein HVW55_14535 PF03797 Autotransporter beta-domain HVW55_14545 PF00563 EAL domain HVW55_14545 PF12792 CSS motif domain associated with EAL HVW55_14550 PF10798 Biofilm development protein YmgB/AriR HVW55_14560 PF10798 Biofilm development protein YmgB/AriR HVW55_14565 PF04940 Sensors of blue-light using FAD HVW55_14565 PF00563 EAL domain HVW55_14570 PF13411 MerR HTH family regulatory protein HVW55_14575 PF07166 Protein of unknown function (DUF1398) HVW55_14595 PF00180 Isocitrate/isopropylmalate dehydrogenase HVW55_14600 PF00849 RNA pseudouridylate synthase HVW55_14605 PF00293 NUDIX domain HVW55_14615 PF04356 Protein of unknown function (DUF489) HVW55_14620 PF08328 Adenylosuccinate lyase C-terminal HVW55_14620 PF00206 Lyase HVW55_14625 PF00486 Transcriptional regulatory protein, C terminal HVW55_14625 PF00072 Response regulator receiver domain HVW55_14630 PF08918 PhoQ Sensor HVW55_14630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_14635 PF08007 Cupin superfamily protein HVW55_14640 PF07687 Peptidase dimerisation domain HVW55_14640 PF01546 Peptidase family M20/M25/M40 HVW55_14645 PF00005 ABC transporter HVW55_14645 PF08402 TOBE domain HVW55_14650 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_14655 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_14660 PF08400 Prophage tail fibre N-terminal HVW55_14660 PF03335 Phage tail fibre repeat HVW55_14660 PF07484 Phage Tail Collar Domain HVW55_14735 PF03864 Phage major capsid protein E HVW55_14745 PF01343 Peptidase family S49 HVW55_14775 PF03864 Phage major capsid protein E HVW55_14850 PF02831 gpW HVW55_14855 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_14860 PF07471 Phage DNA packaging protein Nu1 HVW55_14870 PF07166 Protein of unknown function (DUF1398) HVW55_14875 PF06291 Bor protein HVW55_14895 PF12833 Helix-turn-helix domain HVW55_14905 PF06530 Phage antitermination protein Q HVW55_14910 PF05866 Endodeoxyribonuclease RusA HVW55_14915 PF06147 Protein of unknown function (DUF968) HVW55_14930 PF01848 Hok/gef family HVW55_14955 PF17948 DnaT DNA-binding domain HVW55_14975 PF07151 Protein of unknown function (DUF1391) HVW55_14990 PF05358 DicB protein HVW55_14995 PF07358 Protein of unknown function (DUF1482) HVW55_15010 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain HVW55_15010 PF00589 Phage integrase family HVW55_15025 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_15030 PF13416 Bacterial extracellular solute-binding protein HVW55_15035 PF02146 Sir2 family HVW55_15040 PF00480 ROK family HVW55_15045 PF02687 FtsX-like permease family HVW55_15045 PF12704 MacB-like periplasmic core domain HVW55_15050 PF00005 ABC transporter HVW55_15055 PF02687 FtsX-like permease family HVW55_15055 PF12704 MacB-like periplasmic core domain HVW55_15060 PF01757 Acyltransferase family HVW55_15065 PF02559 CarD-like/TRCF domain HVW55_15065 PF03461 TRCF domain HVW55_15065 PF00271 Helicase conserved C-terminal domain HVW55_15065 PF17757 UvrB interaction domain HVW55_15065 PF00270 DEAD/DEAH box helicase HVW55_15070 PF03734 L,D-transpeptidase catalytic domain HVW55_15070 PF01476 LysM domain HVW55_15070 PF17969 L,D-transpeptidase C-terminal domain HVW55_15075 PF07338 Protein of unknown function (DUF1471) HVW55_15080 PF00440 Bacterial regulatory proteins, tetR family HVW55_15085 PF05433 Glycine zipper 2TM domain HVW55_15090 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_15095 PF05728 Uncharacterised protein family (UPF0227) HVW55_15100 PF00933 Glycosyl hydrolase family 3 N terminal domain HVW55_15105 PF01636 Phosphotransferase enzyme family HVW55_15110 PF13036 Peptidoglycan-synthase activator LpoB HVW55_15115 PF07233 Protein of unknown function (DUF1425) HVW55_15120 PF01230 HIT domain HVW55_15125 PF07715 TonB-dependent Receptor Plug Domain HVW55_15125 PF00593 TonB dependent receptor HVW55_15130 PF00367 phosphotransferase system, EIIB HVW55_15130 PF02378 Phosphotransferase system, EIIC HVW55_15135 PF01026 TatD related DNase HVW55_15140 PF09115 DNA polymerase III, delta subunit, C terminal HVW55_15145 PF02223 Thymidylate kinase HVW55_15150 PF02618 YceG-like family HVW55_15155 PF01063 Amino-transferase class IV HVW55_15160 PF00109 Beta-ketoacyl synthase, N-terminal domain HVW55_15160 PF02801 Beta-ketoacyl synthase, C-terminal domain HVW55_15165 PF00550 Phosphopantetheine attachment site HVW55_15175 PF00698 Acyl transferase domain HVW55_15180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HVW55_15180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HVW55_15185 PF02504 Fatty acid synthesis protein HVW55_15190 PF01783 Ribosomal L32p protein family HVW55_15195 PF02620 Large ribosomal RNA subunit accumulation protein YceD HVW55_15200 PF02545 Maf-like protein HVW55_15205 PF00849 RNA pseudouridylate synthase HVW55_15205 PF01479 S4 domain HVW55_15210 PF10150 Ribonuclease E/G family HVW55_15210 PF00575 S1 RNA binding domain HVW55_15210 PF12111 Polyribonucleotide phosphorylase C terminal HVW55_15215 PF00669 Bacterial flagellin N-terminal helical region HVW55_15220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HVW55_15220 PF00460 Flagella basal body rod protein HVW55_15225 PF10135 Rod binding protein HVW55_15225 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HVW55_15230 PF02119 Flagellar P-ring protein HVW55_15235 PF02107 Flagellar L-ring protein HVW55_15240 PF00460 Flagella basal body rod protein HVW55_15240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HVW55_15245 PF00460 Flagella basal body rod protein HVW55_15245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HVW55_15250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HVW55_15250 PF00460 Flagella basal body rod protein HVW55_15250 PF07559 Flagellar basal body protein FlaE HVW55_15255 PF13860 FlgD Ig-like domain HVW55_15255 PF03963 Flagellar hook capping protein - N-terminal region HVW55_15255 PF13861 FlgD Tudor-like domain HVW55_15260 PF00460 Flagella basal body rod protein HVW55_15260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HVW55_15265 PF00460 Flagella basal body rod protein HVW55_15270 PF13144 Chaperone for flagella basal body P-ring formation HVW55_15275 PF04316 Anti-sigma-28 factor, FlgM HVW55_15280 PF05130 FlgN protein HVW55_15285 PF03023 Lipid II flippase MurJ HVW55_15290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HVW55_15295 PF04337 Protein of unknown function, DUF480 HVW55_15300 PF13302 Acetyltransferase (GNAT) domain HVW55_15305 PF07690 Major Facilitator Superfamily HVW55_15310 PF04399 Glutaredoxin 2, C terminal domain HVW55_15310 PF13417 Glutathione S-transferase, N-terminal domain HVW55_15315 PF07273 Protein of unknown function (DUF1439) HVW55_15320 PF01979 Amidohydrolase family HVW55_15325 PF06183 DinI-like family HVW55_15330 PF13991 BssS protein family HVW55_15335 PF01266 FAD dependent oxidoreductase HVW55_15340 PF10968 Protein of unknown function (DUF2770) HVW55_15345 PF01292 Prokaryotic cytochrome b561 HVW55_15350 PF04264 YceI-like domain HVW55_15360 PF03279 Bacterial lipid A biosynthesis acyltransferase HVW55_15365 PF07690 Major Facilitator Superfamily HVW55_15370 PF13984 MsyB protein HVW55_15375 PF07119 Protein of unknown function (DUF1375) HVW55_15380 PF00535 Glycosyl transferase family 2 HVW55_15385 PF04349 Periplasmic glucan biosynthesis protein, MdoG HVW55_15390 PF01757 Acyltransferase family HVW55_15395 PF13091 PLD-like domain HVW55_15400 PF01661 Macro domain HVW55_15410 PF10610 Thin aggregative fimbriae synthesis protein HVW55_15415 PF07012 Curlin associated repeat HVW55_15420 PF07012 Curlin associated repeat HVW55_15425 PF00196 Bacterial regulatory proteins, luxR family HVW55_15430 PF10627 Curli assembly protein CsgE HVW55_15435 PF10614 Type VIII secretion system (T8SS), CsgF protein HVW55_15440 PF03783 Curli production assembly/transport component CsgG HVW55_15445 PF06496 Protein of unknown function (DUF1097) HVW55_15450 PF02613 Nitrate reductase delta subunit HVW55_15455 PF02811 PHP domain HVW55_15460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HVW55_15500 PF00005 ABC transporter HVW55_15515 PF00109 Beta-ketoacyl synthase, N-terminal domain HVW55_15515 PF02801 Beta-ketoacyl synthase, C-terminal domain HVW55_15520 PF01571 Aminomethyltransferase folate-binding domain HVW55_15520 PF08669 Glycine cleavage T-protein C-terminal barrel domain HVW55_15530 PF07977 FabA-like domain HVW55_15535 PF00106 short chain dehydrogenase HVW55_15540 PF01648 4'-phosphopantetheinyl transferase superfamily HVW55_15545 PF17287 POTRA domain HVW55_15545 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HVW55_15545 PF08479 POTRA domain, ShlB-type HVW55_15550 PF04829 Pre-toxin domain with VENN motif HVW55_15550 PF05860 haemagglutination activity domain HVW55_15550 PF13332 Hemagglutinin repeat HVW55_15550 PF13018 Extended Signal Peptide of Type V secretion system HVW55_15560 PF16970 Type-1 fimbrial protein, A HVW55_15565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_15565 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_15570 PF13954 PapC N-terminal domain HVW55_15570 PF13953 PapC C-terminal domain HVW55_15570 PF00577 Outer membrane usher protein HVW55_15580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_15580 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_15590 PF00486 Transcriptional regulatory protein, C terminal HVW55_15600 PF12792 CSS motif domain associated with EAL HVW55_15600 PF00563 EAL domain HVW55_15605 PF17158 Membrane-associated sensor, integral membrane domain HVW55_15605 PF00990 Diguanylate cyclase, GGDEF domain HVW55_15615 PF14883 Hypothetical glycosyl hydrolase family 13 HVW55_15615 PF01522 Polysaccharide deacetylase HVW55_15620 PF00535 Glycosyl transferase family 2 HVW55_15625 PF13994 PgaD-like protein HVW55_15630 PF02562 PhoH-like protein HVW55_15635 PF04261 Dyp-type peroxidase family HVW55_15640 PF13473 Cupredoxin-like domain HVW55_15640 PF09375 Imelysin HVW55_15645 PF03239 Iron permease FTR1 family HVW55_15655 PF00474 Sodium:solute symporter family HVW55_15665 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HVW55_15665 PF14850 DNA-binding domain of Proline dehydrogenase HVW55_15665 PF01619 Proline dehydrogenase HVW55_15665 PF00171 Aldehyde dehydrogenase family HVW55_15670 PF00440 Bacterial regulatory proteins, tetR family HVW55_15670 PF08362 YcdC-like protein, C-terminal region HVW55_15675 PF00296 Luciferase-like monooxygenase HVW55_15680 PF00857 Isochorismatase family HVW55_15685 PF01042 Endoribonuclease L-PSP HVW55_15690 PF00561 alpha/beta hydrolase fold HVW55_15695 PF00881 Nitroreductase family HVW55_15700 PF01613 Flavin reductase like domain HVW55_15705 PF00860 Permease family HVW55_15710 PF10685 Stress-induced bacterial acidophilic repeat motif HVW55_15715 PF03358 NADPH-dependent FMN reductase HVW55_15720 PF13993 YccJ-like protein HVW55_15725 PF00328 Histidine phosphatase superfamily (branch 2) HVW55_15735 PF01556 DnaJ C terminal domain HVW55_15735 PF00226 DnaJ domain HVW55_15745 PF02613 Nitrate reductase delta subunit HVW55_15750 PF00384 Molybdopterin oxidoreductase HVW55_15750 PF01568 Molydopterin dinucleotide binding domain HVW55_15750 PF18364 Molybdopterin oxidoreductase N-terminal domain HVW55_15755 PF03264 NapC/NirT cytochrome c family, N-terminal region HVW55_15760 PF00486 Transcriptional regulatory protein, C terminal HVW55_15760 PF00072 Response regulator receiver domain HVW55_15765 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_15770 PF00512 His Kinase A (phospho-acceptor) domain HVW55_15770 PF00072 Response regulator receiver domain HVW55_15770 PF01627 Hpt domain HVW55_15770 PF00672 HAMP domain HVW55_15775 PF12801 4Fe-4S binding domain HVW55_15780 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system HVW55_15785 PF15939 Putative antitoxin of bacterial toxin-antitoxin system HVW55_15795 PF00313 'Cold-shock' DNA-binding domain HVW55_15800 PF00313 'Cold-shock' DNA-binding domain HVW55_15810 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HVW55_15815 PF06251 Capsule biosynthesis GfcC HVW55_15820 PF06082 Exopolysaccharide biosynthesis protein YbjH HVW55_15830 PF13006 Insertion element 4 transposase N-terminal HVW55_15830 PF01609 Transposase DDE domain HVW55_15840 PF01451 Low molecular weight phosphotyrosine protein phosphatase HVW55_15845 PF13614 AAA domain HVW55_15845 PF13807 G-rich domain on putative tyrosine kinase HVW55_15845 PF02706 Chain length determinant protein HVW55_15850 PF00328 Histidine phosphatase superfamily (branch 2) HVW55_15855 PF08173 Membrane bound YbgT-like protein HVW55_15860 PF02322 Cytochrome bd terminal oxidase subunit II HVW55_15865 PF01654 Cytochrome bd terminal oxidase subunit I HVW55_15870 PF04809 HupH hydrogenase expression protein, C-terminal conserved region HVW55_15875 PF07449 Hydrogenase-1 expression protein HyaE HVW55_15880 PF01750 Hydrogenase maturation protease HVW55_15885 PF01292 Prokaryotic cytochrome b561 HVW55_15890 PF00374 Nickel-dependent hydrogenase HVW55_15895 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HVW55_15895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HVW55_15905 PF01027 Inhibitor of apoptosis-promoting Bax1 HVW55_15910 PF04358 DsrC like protein HVW55_15915 PF00708 Acylphosphatase HVW55_15920 PF17785 PUA-like domain HVW55_15920 PF10672 S-adenosylmethionine-dependent methyltransferase HVW55_15925 PF08755 Hemimethylated DNA-binding protein YccV like HVW55_15930 PF13380 CoA binding domain HVW55_15935 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HVW55_15940 PF02142 MGS-like domain HVW55_15945 PF00580 UvrD/REP helicase N-terminal domain HVW55_15945 PF13361 UvrD-like helicase C-terminal domain HVW55_15945 PF12462 DNA helicase IV / RNA helicase N terminal HVW55_15950 PF03733 Inner membrane component domain HVW55_15955 PF12805 FUSC-like inner membrane protein yccS HVW55_15960 PF04993 TfoX N-terminal domain HVW55_15960 PF04994 TfoX C-terminal domain HVW55_15965 PF03846 Cell division inhibitor SulA HVW55_15970 PF01389 OmpA-like transmembrane domain HVW55_15970 PF00691 OmpA family HVW55_15975 PF06303 MatP N-terminal domain HVW55_15975 PF17414 MatP C-terminal ribbon-helix-helix domain HVW55_15980 PF05362 Lon protease (S16) C-terminal proteolytic domain HVW55_15980 PF13654 AAA domain HVW55_15985 PF07977 FabA-like domain HVW55_15990 PF04957 Ribosome modulation factor HVW55_15995 PF03886 ABC-type transport auxiliary lipoprotein component HVW55_16000 PF02470 MlaD protein HVW55_16005 PF04403 Paraquat-inducible protein A HVW55_16010 PF12848 ABC transporter HVW55_16010 PF16326 ABC transporter C-terminal domain HVW55_16010 PF00005 ABC transporter HVW55_16015 PF02926 THUMP domain HVW55_16015 PF10672 S-adenosylmethionine-dependent methyltransferase HVW55_16015 PF01170 Putative RNA methylase family UPF0020 HVW55_16020 PF03473 MOSC domain HVW55_16020 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_16020 PF03476 MOSC N-terminal beta barrel domain HVW55_16025 PF07126 Cell-division protein ZapC HVW55_16030 PF01180 Dihydroorotate dehydrogenase HVW55_16035 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_16035 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_16040 PF00419 Fimbrial protein HVW55_16045 PF00419 Fimbrial protein HVW55_16050 PF00419 Fimbrial protein HVW55_16055 PF13953 PapC C-terminal domain HVW55_16055 PF00577 Outer membrane usher protein HVW55_16055 PF13954 PapC N-terminal domain HVW55_16060 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_16060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_16065 PF00419 Fimbrial protein HVW55_16070 PF03358 NADPH-dependent FMN reductase HVW55_16075 PF09084 NMT1/THI5 like HVW55_16080 PF00296 Luciferase-like monooxygenase HVW55_16085 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16090 PF00005 ABC transporter HVW55_16095 PF01433 Peptidase family M1 domain HVW55_16095 PF11940 Domain of unknown function (DUF3458) Ig-like fold HVW55_16095 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HVW55_16100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HVW55_16100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HVW55_16105 PF00152 tRNA synthetases class II (D, K and N) HVW55_16105 PF01336 OB-fold nucleic acid binding domain HVW55_16115 PF00155 Aminotransferase class I and II HVW55_16120 PF00753 Metallo-beta-lactamase superfamily HVW55_16125 PF05951 Bacterial protein of unknown function (DUF882) HVW55_16130 PF03734 L,D-transpeptidase catalytic domain HVW55_16130 PF01471 Putative peptidoglycan binding domain HVW55_16135 PF16330 MukB hinge domain HVW55_16135 PF04310 MukB N-terminal HVW55_16140 PF04288 MukE-like family HVW55_16145 PF17193 MukF C-terminal domain HVW55_16145 PF17192 MukF middle domain HVW55_16145 PF03882 MukF winged-helix domain HVW55_16150 PF13847 Methyltransferase domain HVW55_16155 PF02698 DUF218 domain HVW55_16160 PF01636 Phosphotransferase enzyme family HVW55_16165 PF02348 Cytidylyltransferase HVW55_16170 PF03966 Trm112p-like protein HVW55_16175 PF06224 Winged helix DNA-binding domain HVW55_16180 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HVW55_16185 PF00664 ABC transporter transmembrane region HVW55_16185 PF00005 ABC transporter HVW55_16190 PF00753 Metallo-beta-lactamase superfamily HVW55_16190 PF03772 Competence protein HVW55_16195 PF00216 Bacterial DNA-binding protein HVW55_16200 PF00575 S1 RNA binding domain HVW55_16205 PF02224 Cytidylate kinase HVW55_16210 PF01435 Peptidase family M48 HVW55_16215 PF13006 Insertion element 4 transposase N-terminal HVW55_16215 PF01609 Transposase DDE domain HVW55_16220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HVW55_16225 PF00266 Aminotransferase class-V HVW55_16230 PF04239 Protein of unknown function (DUF421) HVW55_16235 PF18381 YcaO cyclodehydratase C-terminal domain HVW55_16235 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HVW55_16240 PF01226 Formate/nitrite transporter HVW55_16245 PF01228 Glycine radical HVW55_16245 PF02901 Pyruvate formate lyase-like HVW55_16250 PF04606 Ogr/Delta-like zinc finger HVW55_16295 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HVW55_16300 PF08400 Prophage tail fibre N-terminal HVW55_16300 PF07484 Phage Tail Collar Domain HVW55_16300 PF03335 Phage tail fibre repeat HVW55_16430 PF05840 Bacteriophage replication gene A protein (GPA) HVW55_16475 PF00589 Phage integrase family HVW55_16475 PF02899 Phage integrase, N-terminal SAM-like domain HVW55_16480 PF04055 Radical SAM superfamily HVW55_16490 PF13520 Amino acid permease HVW55_16495 PF07690 Major Facilitator Superfamily HVW55_16500 PF00857 Isochorismatase family HVW55_16505 PF04976 DMSO reductase anchor subunit (DmsC) HVW55_16510 PF13247 4Fe-4S dicluster domain HVW55_16510 PF12800 4Fe-4S binding domain HVW55_16515 PF01568 Molydopterin dinucleotide binding domain HVW55_16515 PF00384 Molybdopterin oxidoreductase HVW55_16515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HVW55_16520 PF02403 Seryl-tRNA synthetase N-terminal domain HVW55_16520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HVW55_16525 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_16525 PF16193 AAA C-terminal domain HVW55_16525 PF12002 MgsA AAA+ ATPase C terminal HVW55_16530 PF03548 Outer membrane lipoprotein carrier protein LolA HVW55_16535 PF01580 FtsK/SpoIIIE family HVW55_16535 PF17854 FtsK alpha domain HVW55_16535 PF09397 Ftsk gamma domain HVW55_16535 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HVW55_16540 PF01037 Lrp/AsnC ligand binding domain HVW55_16545 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_16550 PF00005 ABC transporter HVW55_16550 PF00664 ABC transporter transmembrane region HVW55_16555 PF00005 ABC transporter HVW55_16555 PF00664 ABC transporter transmembrane region HVW55_16560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HVW55_16565 PF01176 Translation initiation factor 1A / IF-1 HVW55_16575 PF02861 Clp amino terminal domain, pathogenicity island component HVW55_16575 PF07724 AAA domain (Cdc48 subfamily) HVW55_16575 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_16575 PF17871 AAA lid domain HVW55_16575 PF10431 C-terminal, D2-small domain, of ClpB protein HVW55_16580 PF02617 ATP-dependent Clp protease adaptor protein ClpS HVW55_16585 PF00313 'Cold-shock' DNA-binding domain HVW55_16590 PF00005 ABC transporter HVW55_16590 PF02687 FtsX-like permease family HVW55_16590 PF12704 MacB-like periplasmic core domain HVW55_16595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_16600 PF04393 Protein of unknown function (DUF535) HVW55_16605 PF11398 Protein of unknown function (DUF2813) HVW55_16610 PF00230 Major intrinsic protein HVW55_16615 PF03956 Lysine exporter LysO HVW55_16620 PF03063 Prismane/CO dehydrogenase family HVW55_16625 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_16625 PF00970 Oxidoreductase FAD-binding domain HVW55_16625 PF00175 Oxidoreductase NAD-binding domain HVW55_16630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_16630 PF00205 Thiamine pyrophosphate enzyme, central domain HVW55_16630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_16635 PF01212 Beta-eliminating lyase HVW55_16640 PF11066 Protein of unknown function (DUF2867) HVW55_16640 PF13460 NAD(P)H-binding HVW55_16645 PF01370 NAD dependent epimerase/dehydratase family HVW55_16650 PF01510 N-acetylmuramoyl-L-alanine amidase HVW55_16655 PF01906 Putative heavy-metal-binding HVW55_16665 PF12883 Protein of unknown function (DUF3828) HVW55_16670 PF00005 ABC transporter HVW55_16675 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_16680 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16685 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16690 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_16705 PF03611 PTS system sugar-specific permease component HVW55_16710 PF05958 tRNA (Uracil-5-)-methyltransferase HVW55_16715 PF10767 Protein of unknown function (DUF2593) HVW55_16720 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16725 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16730 PF00005 ABC transporter HVW55_16730 PF08402 TOBE domain HVW55_16735 PF13416 Bacterial extracellular solute-binding protein HVW55_16740 PF10722 Putative bacterial sensory transduction regulator HVW55_16745 PF08443 RimK-like ATP-grasp domain HVW55_16745 PF18030 RimK PreATP-grasp domain HVW55_16750 PF00881 Nitroreductase family HVW55_16755 PF07214 Protein of unknown function (DUF1418) HVW55_16760 PF00462 Glutaredoxin HVW55_16765 PF11045 Putative inner membrane protein of Enterobacteriaceae HVW55_16770 PF06826 Predicted Permease Membrane Region HVW55_16770 PF02080 TrkA-C domain HVW55_16780 PF00440 Bacterial regulatory proteins, tetR family HVW55_16785 PF07690 Major Facilitator Superfamily HVW55_16800 PF07690 Major Facilitator Superfamily HVW55_16805 PF01569 PAP2 superfamily HVW55_16810 PF00455 DeoR C terminal sensor domain HVW55_16810 PF08220 DeoR-like helix-turn-helix domain HVW55_16815 PF07943 Penicillin-binding protein 5, C-terminal domain HVW55_16815 PF00768 D-alanyl-D-alanine carboxypeptidase HVW55_16820 PF13417 Glutathione S-transferase, N-terminal domain HVW55_16820 PF00043 Glutathione S-transferase, C-terminal domain HVW55_16825 PF07995 Glucose / Sorbosone dehydrogenase HVW55_16830 PF10799 Biofilm formation protein (YliH/bssR) HVW55_16835 PF04055 Radical SAM superfamily HVW55_16835 PF18693 TRAM domain HVW55_16835 PF00919 Uncharacterized protein family UPF0004 HVW55_16850 PF00990 Diguanylate cyclase, GGDEF domain HVW55_16850 PF17156 Gammaproteobacterial periplasmic sensor domain HVW55_16855 PF00563 EAL domain HVW55_16855 PF17153 Periplasmic sensor domain, extracellular HVW55_16860 PF12911 N-terminal TM domain of oligopeptide transport permease C HVW55_16860 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16865 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_16875 PF00005 ABC transporter HVW55_16875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HVW55_16880 PF01112 Asparaginase HVW55_16885 PF03454 MoeA C-terminal region (domain IV) HVW55_16885 PF03453 MoeA N-terminal region (domain I and II) HVW55_16885 PF00994 Probable molybdopterin binding domain HVW55_16890 PF00899 ThiF family HVW55_16895 PF00923 Transaldolase/Fructose-6-phosphate aldolase HVW55_16900 PF04055 Radical SAM superfamily HVW55_16905 PF01228 Glycine radical HVW55_16905 PF02901 Pyruvate formate lyase-like HVW55_16915 PF07350 Protein of unknown function (DUF1479) HVW55_16920 PF12848 ABC transporter HVW55_16920 PF00005 ABC transporter HVW55_16925 PF03734 L,D-transpeptidase catalytic domain HVW55_16925 PF17969 L,D-transpeptidase C-terminal domain HVW55_16930 PF03600 Citrate transporter HVW55_16935 PF02742 Iron dependent repressor, metal binding and dimerisation domain HVW55_16935 PF01325 Iron dependent repressor, N-terminal DNA binding domain HVW55_16945 PF00884 Sulfatase HVW55_16950 PF13505 Outer membrane protein beta-barrel domain HVW55_16960 PF00892 EamA-like transporter family HVW55_16965 PF00210 Ferritin-like domain HVW55_16970 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_16975 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_16980 PF00005 ABC transporter HVW55_16985 PF00924 Mechanosensitive ion channel HVW55_16990 PF05971 RNA methyltransferase HVW55_16995 PF07338 Protein of unknown function (DUF1471) HVW55_17000 PF00593 TonB dependent receptor HVW55_17000 PF07715 TonB-dependent Receptor Plug Domain HVW55_17005 PF18331 PKHD-type hydroxylase C-terminal domain HVW55_17005 PF13640 2OG-Fe(II) oxygenase superfamily HVW55_17010 PF01258 Prokaryotic dksA/traR C4-type zinc finger HVW55_17015 PF07338 Protein of unknown function (DUF1471) HVW55_17020 PF02615 Malate/L-lactate dehydrogenase HVW55_17025 PF02885 Glycosyl transferase family, helical bundle domain HVW55_17030 PF00270 DEAD/DEAH box helicase HVW55_17030 PF13307 Helicase C-terminal domain HVW55_17030 PF06733 DEAD_2 HVW55_17045 PF00270 DEAD/DEAH box helicase HVW55_17045 PF00271 Helicase conserved C-terminal domain HVW55_17050 PF09209 Tetracyclin repressor-like, C-terminal domain HVW55_17050 PF00440 Bacterial regulatory proteins, tetR family HVW55_17055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_17060 PF00005 ABC transporter HVW55_17075 PF11076 Putative inner membrane protein YbhQ HVW55_17080 PF03372 Endonuclease/Exonuclease/phosphatase family HVW55_17085 PF13091 PLD-like domain HVW55_17090 PF03706 Lysylphosphatidylglycerol synthase TM region HVW55_17095 PF01027 Inhibitor of apoptosis-promoting Bax1 HVW55_17100 PF01027 Inhibitor of apoptosis-promoting Bax1 HVW55_17105 PF02391 MoaE protein HVW55_17110 PF02597 ThiS family HVW55_17115 PF01967 MoaC family HVW55_17120 PF00994 Probable molybdopterin binding domain HVW55_17125 PF06463 Molybdenum Cofactor Synthesis C HVW55_17125 PF04055 Radical SAM superfamily HVW55_17130 PF01933 Uncharacterised protein family UPF0052 HVW55_17135 PF02151 UvrB/uvrC motif HVW55_17135 PF00271 Helicase conserved C-terminal domain HVW55_17135 PF12344 Ultra-violet resistance protein B HVW55_17135 PF04851 Type III restriction enzyme, res subunit HVW55_17135 PF17757 UvrB interaction domain HVW55_17145 PF08241 Methyltransferase domain HVW55_17150 PF00155 Aminotransferase class I and II HVW55_17155 PF04055 Radical SAM superfamily HVW55_17155 PF06968 Biotin and Thiamin Synthesis associated domain HVW55_17160 PF00202 Aminotransferase class-III HVW55_17165 PF01161 Phosphatidylethanolamine-binding protein HVW55_17170 PF01095 Pectinesterase HVW55_17175 PF00330 Aconitase family (aconitate hydratase) HVW55_17175 PF00694 Aconitase C-terminal domain HVW55_17180 PF00939 Sodium:sulfate symporter transmembrane region HVW55_17185 PF04303 PrpF protein HVW55_17190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_17190 PF03466 LysR substrate binding domain HVW55_17195 PF10282 Lactonase, 7-bladed beta-propeller HVW55_17205 PF03459 TOBE domain HVW55_17205 PF00005 ABC transporter HVW55_17210 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_17220 PF10766 Multidrug efflux pump-associated protein AcrZ HVW55_17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_17225 PF03459 TOBE domain HVW55_17230 PF00005 ABC transporter HVW55_17235 PF16363 GDP-mannose 4,6 dehydratase HVW55_17240 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HVW55_17240 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HVW55_17245 PF08544 GHMP kinases C terminal HVW55_17245 PF00288 GHMP kinases N terminal domain HVW55_17245 PF10509 Galactokinase galactose-binding signature HVW55_17250 PF01263 Aldose 1-epimerase HVW55_17255 PF00300 Histidine phosphatase superfamily (branch 1) HVW55_17260 PF00793 DAHP synthetase I family HVW55_17265 PF13985 YbgS-like protein HVW55_17270 PF01545 Cation efflux family HVW55_17275 PF04973 Nicotinamide mononucleotide transporter HVW55_17280 PF02445 Quinolinate synthetase A protein HVW55_17320 PF16331 TolA binding protein trimerisation HVW55_17320 PF13174 Tetratricopeptide repeat HVW55_17325 PF00691 OmpA family HVW55_17330 PF07676 WD40-like Beta Propeller Repeat HVW55_17330 PF04052 TolB amino-terminal domain HVW55_17335 PF06519 TolA C-terminal HVW55_17340 PF02472 Biopolymer transport protein ExbD/TolR HVW55_17345 PF01618 MotA/TolQ/ExbB proton channel family HVW55_17350 PF03061 Thioesterase superfamily HVW55_17355 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HVW55_17360 PF08173 Membrane bound YbgT-like protein HVW55_17365 PF02322 Cytochrome bd terminal oxidase subunit II HVW55_17370 PF01654 Cytochrome bd terminal oxidase subunit I HVW55_17385 PF02310 B12 binding domain HVW55_17390 PF13941 MutL protein HVW55_17395 PF06368 Methylaspartate mutase E chain (MutE) HVW55_17400 PF05034 Methylaspartate ammonia-lyase N-terminus HVW55_17400 PF07476 Methylaspartate ammonia-lyase C-terminus HVW55_17415 PF00375 Sodium:dicarboxylate symporter family HVW55_17420 PF05683 Fumarase C-terminus HVW55_17420 PF05681 Fumarate hydratase (Fumerase) HVW55_17425 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HVW55_17425 PF12557 Cob(I)alamin adenosyltransferase N terminal HVW55_17430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_17430 PF03466 LysR substrate binding domain HVW55_17435 PF00549 CoA-ligase HVW55_17435 PF02629 CoA binding domain HVW55_17440 PF08442 ATP-grasp domain HVW55_17440 PF00549 CoA-ligase HVW55_17445 PF02817 e3 binding domain HVW55_17445 PF00364 Biotin-requiring enzyme HVW55_17445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HVW55_17450 PF02779 Transketolase, pyrimidine binding domain HVW55_17450 PF16870 2-oxoglutarate dehydrogenase C-terminal HVW55_17450 PF16078 2-oxoglutarate dehydrogenase N-terminus HVW55_17450 PF00676 Dehydrogenase E1 component HVW55_17455 PF13085 2Fe-2S iron-sulfur cluster binding domain HVW55_17460 PF00890 FAD binding domain HVW55_17460 PF02910 Fumarate reductase flavoprotein C-term HVW55_17465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HVW55_17470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HVW55_17480 PF00285 Citrate synthase, C-terminal domain HVW55_17485 PF00419 Fimbrial protein HVW55_17490 PF13953 PapC C-terminal domain HVW55_17490 PF13954 PapC N-terminal domain HVW55_17490 PF00577 Outer membrane usher protein HVW55_17495 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_17495 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_17500 PF00419 Fimbrial protein HVW55_17505 PF05145 Transition state regulatory protein AbrB HVW55_17510 PF06827 Zinc finger found in FPG and IleRS HVW55_17510 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HVW55_17510 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HVW55_17515 PF03746 LamB/YcsF family HVW55_17520 PF02626 Carboxyltransferase domain, subdomain A and B HVW55_17525 PF02682 Carboxyltransferase domain, subdomain C and D HVW55_17530 PF01784 NIF3 (NGG1p interacting factor 3) HVW55_17535 PF00854 POT family HVW55_17540 PF03441 FAD binding domain of DNA photolyase HVW55_17540 PF00875 DNA photolyase HVW55_17545 PF08349 Protein of unknown function (DUF1722) HVW55_17550 PF10725 Protein of unknown function (DUF2517) HVW55_17555 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) HVW55_17560 PF03814 Potassium-transporting ATPase A subunit HVW55_17570 PF02669 K+-transporting ATPase, c chain HVW55_17575 PF13492 GAF domain HVW55_17575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_17575 PF00512 His Kinase A (phospho-acceptor) domain HVW55_17575 PF02702 Osmosensitive K+ channel His kinase sensor domain HVW55_17575 PF13493 Domain of unknown function (DUF4118) HVW55_17580 PF00072 Response regulator receiver domain HVW55_17580 PF00486 Transcriptional regulatory protein, C terminal HVW55_17590 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HVW55_17590 PF01276 Orn/Lys/Arg decarboxylase, major domain HVW55_17590 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HVW55_17595 PF13520 Amino acid permease HVW55_17600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HVW55_17600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HVW55_17600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HVW55_17600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HVW55_17605 PF03925 SeqA protein C-terminal domain HVW55_17605 PF17206 SeqA protein N-terminal domain HVW55_17610 PF12697 Alpha/beta hydrolase family HVW55_17615 PF01402 Ribbon-helix-helix protein, copG family HVW55_17620 PF00258 Flavodoxin HVW55_17630 PF01475 Ferric uptake regulator family HVW55_17635 PF13982 YbfN-like lipoprotein HVW55_17640 PF03573 outer membrane porin, OprD family HVW55_17645 PF00749 tRNA synthetases class I (E and Q), catalytic domain HVW55_17645 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HVW55_17650 PF02378 Phosphotransferase system, EIIC HVW55_17650 PF00367 phosphotransferase system, EIIB HVW55_17650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HVW55_17655 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HVW55_17660 PF01979 Amidohydrolase family HVW55_17665 PF01047 MarR family HVW55_17665 PF00480 ROK family HVW55_17670 PF13344 Haloacid dehalogenase-like hydrolase HVW55_17675 PF13537 Glutamine amidotransferase domain HVW55_17675 PF00733 Asparagine synthase HVW55_17715 PF01494 FAD binding domain HVW55_17720 PF00919 Uncharacterized protein family UPF0004 HVW55_17720 PF04055 Radical SAM superfamily HVW55_17720 PF01938 TRAM domain HVW55_17725 PF02562 PhoH-like protein HVW55_17730 PF02130 Uncharacterized protein family UPF0054 HVW55_17735 PF00571 CBS domain HVW55_17735 PF03471 Transporter associated domain HVW55_17740 PF00795 Carbon-nitrogen hydrolase HVW55_17745 PF00497 Bacterial extracellular solute-binding proteins, family 3 HVW55_17750 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_17755 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_17760 PF00005 ABC transporter HVW55_17765 PF01156 Inosine-uridine preferring nucleoside hydrolase HVW55_17770 PF00012 Hsp70 protein HVW55_17780 PF06889 Protein of unknown function (DUF1266) HVW55_17785 PF08238 Sel1 repeat HVW55_17795 PF06889 Protein of unknown function (DUF1266) HVW55_17800 PF08238 Sel1 repeat HVW55_17805 PF07295 Zinc-ribbon containing domain HVW55_17810 PF00133 tRNA synthetases class I (I, L, M and V) HVW55_17810 PF08264 Anticodon-binding domain of tRNA HVW55_17810 PF13603 Leucyl-tRNA synthetase, Domain 2 HVW55_17815 PF04390 Lipopolysaccharide-assembly HVW55_17820 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HVW55_17820 PF06144 DNA polymerase III, delta subunit HVW55_17825 PF01467 Cytidylyltransferase-like HVW55_17830 PF00300 Histidine phosphatase superfamily (branch 1) HVW55_17840 PF02590 Predicted SPOUT methyltransferase HVW55_17845 PF00905 Penicillin binding protein transpeptidase domain HVW55_17845 PF03717 Penicillin-binding Protein dimerisation domain HVW55_17850 PF01098 Cell cycle protein HVW55_17855 PF03330 Lytic transglycolase HVW55_17855 PF05036 Sporulation related domain HVW55_17860 PF00768 D-alanyl-D-alanine carboxypeptidase HVW55_17860 PF07943 Penicillin-binding protein 5, C-terminal domain HVW55_17865 PF04359 Protein of unknown function (DUF493) HVW55_17870 PF03099 Biotin/lipoate A/B protein ligase family HVW55_17875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_17875 PF03466 LysR substrate binding domain HVW55_17880 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HVW55_17880 PF04055 Radical SAM superfamily HVW55_17885 PF02416 mttA/Hcf106 family HVW55_17890 PF00795 Carbon-nitrogen hydrolase HVW55_17895 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HVW55_17900 PF00313 'Cold-shock' DNA-binding domain HVW55_17905 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP HVW55_17910 PF03606 C4-dicarboxylate anaerobic carrier HVW55_17915 PF00072 Response regulator receiver domain HVW55_17915 PF12431 Transcriptional regulator HVW55_17920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_17920 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HVW55_17920 PF17203 Single cache domain 3 HVW55_17920 PF00989 PAS fold HVW55_17925 PF08218 Citrate lyase ligase C-terminal domain HVW55_17930 PF06857 Malonate decarboxylase delta subunit (MdcD) HVW55_17935 PF03328 HpcH/HpaI aldolase/citrate lyase family HVW55_17940 PF04223 Citrate lyase, alpha subunit (CitF) HVW55_17945 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HVW55_17950 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HVW55_17955 PF00939 Sodium:sulfate symporter transmembrane region HVW55_17960 PF00445 Ribonuclease T2 family HVW55_17965 PF14760 Rnk N-terminus HVW55_17965 PF01272 Transcription elongation factor, GreA/GreB, C-term HVW55_17970 PF13823 Alcohol dehydrogenase GroES-associated HVW55_17970 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_17970 PF00107 Zinc-binding dehydrogenase HVW55_17975 PF00582 Universal stress protein family HVW55_17980 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_17980 PF13192 Thioredoxin domain HVW55_17985 PF00578 AhpC/TSA family HVW55_17985 PF10417 C-terminal domain of 1-Cys peroxiredoxin HVW55_17990 PF13098 Thioredoxin-like domain HVW55_17995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_17995 PF03466 LysR substrate binding domain HVW55_18000 PF11922 Domain of unknown function (DUF3440) HVW55_18000 PF01507 Phosphoadenosine phosphosulfate reductase family HVW55_18005 PF02195 ParB-like nuclease domain HVW55_18010 PF00155 Aminotransferase class I and II HVW55_18015 PF00465 Iron-containing alcohol dehydrogenase HVW55_18020 PF04328 Selenoprotein, putative HVW55_18095 PF03864 Phage major capsid protein E HVW55_18120 PF03061 Thioesterase superfamily HVW55_18130 PF00550 Phosphopantetheine attachment site HVW55_18130 PF00857 Isochorismatase family HVW55_18135 PF13193 AMP-binding enzyme C-terminal domain HVW55_18135 PF00501 AMP-binding enzyme HVW55_18140 PF00425 chorismate binding enzyme HVW55_18145 PF01497 Periplasmic binding protein HVW55_18150 PF05977 Transmembrane secretion effector HVW55_18155 PF01032 FecCD transport family HVW55_18160 PF01032 FecCD transport family HVW55_18165 PF00005 ABC transporter HVW55_18170 PF02706 Chain length determinant protein HVW55_18175 PF00668 Condensation domain HVW55_18175 PF00975 Thioesterase domain HVW55_18175 PF00501 AMP-binding enzyme HVW55_18175 PF00550 Phosphopantetheine attachment site HVW55_18180 PF03621 MbtH-like protein HVW55_18185 PF00756 Putative esterase HVW55_18185 PF11806 Domain of unknown function (DUF3327) HVW55_18190 PF07715 TonB-dependent Receptor Plug Domain HVW55_18190 PF00593 TonB dependent receptor HVW55_18195 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HVW55_18195 PF01648 4'-phosphopantetheinyl transferase superfamily HVW55_18200 PF01848 Hok/gef family HVW55_18205 PF01848 Hok/gef family HVW55_18215 PF04107 Glutamate-cysteine ligase family 2(GCS2) HVW55_18220 PF06643 Protein of unknown function (DUF1158) HVW55_18225 PF04237 YjbR HVW55_18230 PF00881 Nitroreductase family HVW55_18235 PF00924 Mechanosensitive ion channel HVW55_18240 PF00324 Amino acid permease HVW55_18245 PF00873 AcrB/AcrD/AcrF family HVW55_18250 PF00529 HlyD membrane-fusion protein of T1SS HVW55_18250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_18255 PF11604 Copper binding periplasmic protein CusF HVW55_18260 PF02321 Outer membrane efflux protein HVW55_18265 PF00486 Transcriptional regulatory protein, C terminal HVW55_18265 PF00072 Response regulator receiver domain HVW55_18270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_18270 PF00512 His Kinase A (phospho-acceptor) domain HVW55_18270 PF00672 HAMP domain HVW55_18275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HVW55_18275 PF13632 Glycosyl transferase family group 2 HVW55_18280 PF13283 Bacteriophage N adsorption protein A C-term HVW55_18285 PF14488 Domain of unknown function (DUF4434) HVW55_18300 PF00072 Response regulator receiver domain HVW55_18300 PF00196 Bacterial regulatory proteins, luxR family HVW55_18305 PF00419 Fimbrial protein HVW55_18310 PF00419 Fimbrial protein HVW55_18315 PF13953 PapC C-terminal domain HVW55_18315 PF13954 PapC N-terminal domain HVW55_18315 PF00577 Outer membrane usher protein HVW55_18320 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_18320 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_18325 PF00419 Fimbrial protein HVW55_18330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HVW55_18330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HVW55_18340 PF04307 LexA-binding, inner membrane-associated putative hydrolase HVW55_18345 PF09190 DALR domain HVW55_18345 PF01406 tRNA synthetases class I (C) catalytic domain HVW55_18350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HVW55_18355 PF12850 Calcineurin-like phosphoesterase superfamily domain HVW55_18360 PF00731 AIR carboxylase HVW55_18365 PF02222 ATP-grasp domain HVW55_18365 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HVW55_18370 PF00696 Amino acid kinase family HVW55_18375 PF11392 Protein of unknown function (DUF2877) HVW55_18380 PF06545 Protein of unknown function (DUF1116) HVW55_18385 PF02629 CoA binding domain HVW55_18385 PF00549 CoA-ligase HVW55_18390 PF02615 Malate/L-lactate dehydrogenase HVW55_18395 PF01546 Peptidase family M20/M25/M40 HVW55_18400 PF07883 Cupin domain HVW55_18400 PF05899 Protein of unknown function (DUF861) HVW55_18405 PF02595 Glycerate kinase family HVW55_18410 PF00860 Permease family HVW55_18415 PF01979 Amidohydrolase family HVW55_18420 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HVW55_18425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HVW55_18425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HVW55_18430 PF01261 Xylose isomerase-like TIM barrel HVW55_18435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_18435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_18435 PF00205 Thiamine pyrophosphate enzyme, central domain HVW55_18440 PF01614 Bacterial transcriptional regulator HVW55_18440 PF09339 IclR helix-turn-helix domain HVW55_18445 PF04115 Ureidoglycolate lyase HVW55_18450 PF03466 LysR substrate binding domain HVW55_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_18480 PF00005 ABC transporter HVW55_18485 PF13472 GDSL-like Lipase/Acylhydrolase family HVW55_18490 PF00106 short chain dehydrogenase HVW55_18495 PF00085 Thioredoxin HVW55_18500 PF03649 Uncharacterised protein family (UPF0014) HVW55_18505 PF00005 ABC transporter HVW55_18510 PF16200 C-terminal region of band_7 HVW55_18510 PF01145 SPFH domain / Band 7 family HVW55_18515 PF01957 NfeD-like C-terminal, partner-binding HVW55_18535 PF13411 MerR HTH family regulatory protein HVW55_18540 PF00529 HlyD membrane-fusion protein of T1SS HVW55_18545 PF03412 Peptidase C39 family HVW55_18545 PF00005 ABC transporter HVW55_18545 PF00664 ABC transporter transmembrane region HVW55_18560 PF13520 Amino acid permease HVW55_18565 PF04960 Glutaminase HVW55_18570 PF00403 Heavy-metal-associated domain HVW55_18575 PF01381 Helix-turn-helix HVW55_18580 PF01963 TraB family HVW55_18585 PF04073 Aminoacyl-tRNA editing domain HVW55_18590 PF02872 5'-nucleotidase, C-terminal domain HVW55_18590 PF00149 Calcineurin-like phosphoesterase HVW55_18595 PF07690 Major Facilitator Superfamily HVW55_18600 PF00999 Sodium/hydrogen exchanger family HVW55_18600 PF02254 TrkA-N domain HVW55_18610 PF00294 pfkB family carbohydrate kinase HVW55_18615 PF07859 alpha/beta hydrolase fold HVW55_18620 PF00762 Ferrochelatase HVW55_18625 PF05191 Adenylate kinase, active site lid HVW55_18630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_18630 PF00183 Hsp90 protein HVW55_18635 PF13662 Toprim domain HVW55_18635 PF02132 RecR protein HVW55_18640 PF02575 YbaB/EbfC DNA-binding family HVW55_18645 PF12169 DNA polymerase III subunits gamma and tau domain III HVW55_18645 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HVW55_18645 PF12170 DNA polymerase III tau subunit V interacting with alpha HVW55_18650 PF00156 Phosphoribosyl transferase domain HVW55_18655 PF04304 Protein of unknown function (DUF454) HVW55_18660 PF07445 Primosomal replication protein priC HVW55_18665 PF10689 Protein of unknown function (DUF2496) HVW55_18670 PF00924 Mechanosensitive ion channel HVW55_18670 PF12794 Mechanosensitive ion channel inner membrane domain 1 HVW55_18670 PF12795 Mechanosensitive ion channel porin domain HVW55_18675 PF00440 Bacterial regulatory proteins, tetR family HVW55_18675 PF08361 MAATS-type transcriptional repressor, C-terminal region HVW55_18680 PF00529 HlyD membrane-fusion protein of T1SS HVW55_18680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_18685 PF00873 AcrB/AcrD/AcrF family HVW55_18690 PF10757 Biofilm formation regulator YbaJ HVW55_18695 PF05321 Haemolysin expression modulating protein HVW55_18700 PF12464 Maltose acetyltransferase HVW55_18700 PF14602 Hexapeptide repeat of succinyl-transferase HVW55_18705 PF10777 Inner membrane protein YlaC HVW55_18710 PF00563 EAL domain HVW55_18710 PF12792 CSS motif domain associated with EAL HVW55_18715 PF07237 Protein of unknown function (DUF1428) HVW55_18725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HVW55_18730 PF09619 Type III secretion system lipoprotein chaperone (YscW) HVW55_18740 PF00909 Ammonium Transporter Family HVW55_18745 PF00543 Nitrogen regulatory protein P-II HVW55_18750 PF00005 ABC transporter HVW55_18750 PF00664 ABC transporter transmembrane region HVW55_18755 PF00664 ABC transporter transmembrane region HVW55_18755 PF00005 ABC transporter HVW55_18760 PF01037 Lrp/AsnC ligand binding domain HVW55_18760 PF13404 AsnC-type helix-turn-helix domain HVW55_18770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_18770 PF12793 Sugar transport-related sRNA regulator N-term HVW55_18775 PF06508 Queuosine biosynthesis protein QueC HVW55_18790 PF13145 PPIC-type PPIASE domain HVW55_18795 PF00216 Bacterial DNA-binding protein HVW55_18800 PF05362 Lon protease (S16) C-terminal proteolytic domain HVW55_18800 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_18800 PF02190 ATP-dependent protease La (LON) substrate-binding domain HVW55_18805 PF06689 ClpX C4-type zinc finger HVW55_18805 PF10431 C-terminal, D2-small domain, of ClpB protein HVW55_18805 PF07724 AAA domain (Cdc48 subfamily) HVW55_18810 PF00574 Clp protease HVW55_18815 PF05697 Bacterial trigger factor protein (TF) HVW55_18815 PF05698 Bacterial trigger factor protein (TF) C-terminus HVW55_18815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HVW55_18820 PF01722 BolA-like protein HVW55_18825 PF03923 Uncharacterized lipoprotein HVW55_18825 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HVW55_18830 PF07690 Major Facilitator Superfamily HVW55_18835 PF06481 COX Aromatic Rich Motif HVW55_18835 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HVW55_18840 PF00115 Cytochrome C and Quinol oxidase polypeptide I HVW55_18845 PF00510 Cytochrome c oxidase subunit III HVW55_18850 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HVW55_18855 PF01040 UbiA prenyltransferase family HVW55_18860 PF07690 Major Facilitator Superfamily HVW55_18865 PF04461 Protein of unknown function (DUF520) HVW55_18870 PF08546 Ketopantoate reductase PanE/ApbA C terminal HVW55_18870 PF02558 Ketopantoate reductase PanE/ApbA HVW55_18875 PF01965 DJ-1/PfpI family HVW55_18880 PF02568 Thiamine biosynthesis protein (ThiI) HVW55_18880 PF02926 THUMP domain HVW55_18885 PF02609 Exonuclease VII small subunit HVW55_18890 PF00348 Polyprenyl synthetase HVW55_18895 PF02780 Transketolase, C-terminal domain HVW55_18895 PF02779 Transketolase, pyrimidine binding domain HVW55_18895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HVW55_18900 PF00248 Aldo/keto reductase family HVW55_18910 PF04608 Phosphatidylglycerophosphatase A HVW55_18915 PF00586 AIR synthase related protein, N-terminal domain HVW55_18915 PF02769 AIR synthase related protein, C-terminal domain HVW55_18920 PF01029 NusB family HVW55_18925 PF00885 6,7-dimethyl-8-ribityllumazine synthase HVW55_18930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HVW55_18930 PF01872 RibD C-terminal domain HVW55_18935 PF03477 ATP cone domain HVW55_18940 PF11622 Protein of unknown function (DUF3251) HVW55_18945 PF03502 Nucleoside-specific channel-forming protein, Tsx HVW55_18950 PF01844 HNH endonuclease HVW55_18960 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HVW55_18965 PF02355 Protein export membrane protein HVW55_18965 PF07549 SecD/SecF GG Motif HVW55_18970 PF02355 Protein export membrane protein HVW55_18970 PF07549 SecD/SecF GG Motif HVW55_18970 PF13721 SecD export protein N-terminal TM region HVW55_18975 PF02699 Preprotein translocase subunit HVW55_18980 PF01702 Queuine tRNA-ribosyltransferase HVW55_18985 PF02547 Queuosine biosynthesis protein HVW55_18990 PF04336 Acyl carrier protein phosphodiesterase HVW55_19000 PF02903 Alpha amylase, N-terminal ig-like domain HVW55_19000 PF00128 Alpha amylase, catalytic domain HVW55_19005 PF00324 Amino acid permease HVW55_19010 PF05525 Branched-chain amino acid transport protein HVW55_19015 PF11808 Phosphate regulon sensor protein PhoR HVW55_19015 PF00512 His Kinase A (phospho-acceptor) domain HVW55_19015 PF00989 PAS fold HVW55_19015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_19020 PF00072 Response regulator receiver domain HVW55_19020 PF00486 Transcriptional regulatory protein, C terminal HVW55_19025 PF12320 Type 5 capsule protein repressor C-terminal domain HVW55_19025 PF00149 Calcineurin-like phosphoesterase HVW55_19030 PF13476 AAA domain HVW55_19035 PF07690 Major Facilitator Superfamily HVW55_19040 PF00480 ROK family HVW55_19045 PF04381 Putative exonuclease, RdgC HVW55_19055 PF10971 Protein of unknown function (DUF2773) HVW55_19060 PF06865 Pyrimidine/purine nucleoside phosphorylase HVW55_19065 PF07302 AroM protein HVW55_19070 PF16362 YaiA protein HVW55_19075 PF01202 Shikimate kinase HVW55_19080 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HVW55_19085 PF03807 NADP oxidoreductase coenzyme F420-dependent HVW55_19085 PF14748 Pyrroline-5-carboxylate reductase dimerisation HVW55_19090 PF05230 MASE2 domain HVW55_19090 PF00990 Diguanylate cyclase, GGDEF domain HVW55_19095 PF07769 psiF repeat HVW55_19100 PF00245 Alkaline phosphatase HVW55_19105 PF10796 Sigma-S stabilisation anti-adaptor protein HVW55_19115 PF01820 D-ala D-ala ligase N-terminus HVW55_19115 PF07478 D-ala D-ala ligase C-terminus HVW55_19120 PF10953 Protein of unknown function (DUF2754) HVW55_19125 PF10954 Protein of unknown function (DUF2755) HVW55_19130 PF07759 Protein of unknown function (DUF1615) HVW55_19135 PF05992 SbmA/BacA-like family HVW55_19140 PF00144 Beta-lactamase HVW55_19145 PF15977 Winged helix-turn-helix DNA binding HVW55_19150 PF03212 Pertactin HVW55_19150 PF03797 Autotransporter beta-domain HVW55_19155 PF00490 Delta-aminolevulinic acid dehydratase HVW55_19160 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HVW55_19165 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_19170 PF00005 ABC transporter HVW55_19175 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HVW55_19180 PF00072 Response regulator receiver domain HVW55_19180 PF00196 Bacterial regulatory proteins, luxR family HVW55_19185 PF05231 MASE1 HVW55_19185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_19185 PF07730 Histidine kinase HVW55_19190 PF07690 Major Facilitator Superfamily HVW55_19200 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_19205 PF08402 TOBE domain HVW55_19205 PF00005 ABC transporter HVW55_19210 PF02583 Metal-sensitive transcriptional repressor HVW55_19215 PF00107 Zinc-binding dehydrogenase HVW55_19215 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_19220 PF00756 Putative esterase HVW55_19225 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HVW55_19230 PF07690 Major Facilitator Superfamily HVW55_19235 PF00682 HMGL-like HVW55_19235 PF07836 DmpG-like communication domain HVW55_19240 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation HVW55_19240 PF01118 Semialdehyde dehydrogenase, NAD binding domain HVW55_19245 PF01557 Fumarylacetoacetate (FAA) hydrolase family HVW55_19250 PF12697 Alpha/beta hydrolase family HVW55_19255 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HVW55_19260 PF01494 FAD binding domain HVW55_19265 PF01614 Bacterial transcriptional regulator HVW55_19265 PF09339 IclR helix-turn-helix domain HVW55_19270 PF12706 Beta-lactamase superfamily domain HVW55_19280 PF00356 Bacterial regulatory proteins, lacI family HVW55_19285 PF02837 Glycosyl hydrolases family 2, sugar binding domain HVW55_19285 PF16353 Domain of unknown function(DUF4981) HVW55_19285 PF00703 Glycosyl hydrolases family 2 HVW55_19285 PF02929 Beta galactosidase small chain HVW55_19285 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HVW55_19290 PF01306 LacY proton/sugar symporter HVW55_19295 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_19295 PF12464 Maltose acetyltransferase HVW55_19300 PF07690 Major Facilitator Superfamily HVW55_19305 PF02560 Cyanate lyase C-terminal domain HVW55_19310 PF00484 Carbonic anhydrase HVW55_19315 PF03466 LysR substrate binding domain HVW55_19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_19320 PF07969 Amidohydrolase family HVW55_19325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HVW55_19330 PF16177 Acetyl-coenzyme A synthetase N-terminus HVW55_19330 PF00501 AMP-binding enzyme HVW55_19330 PF13193 AMP-binding enzyme C-terminal domain HVW55_19335 PF03972 MmgE/PrpD family HVW55_19340 PF00285 Citrate synthase, C-terminal domain HVW55_19350 PF00158 Sigma-54 interaction domain HVW55_19350 PF02954 Bacterial regulatory protein, Fis family HVW55_19350 PF06506 Propionate catabolism activator HVW55_19355 PF07338 Protein of unknown function (DUF1471) HVW55_19360 PF01810 LysE type translocator HVW55_19375 PF00107 Zinc-binding dehydrogenase HVW55_19375 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_19380 PF02653 Branched-chain amino acid transport system / permease component HVW55_19385 PF02653 Branched-chain amino acid transport system / permease component HVW55_19390 PF00005 ABC transporter HVW55_19395 PF13407 Periplasmic binding protein domain HVW55_19405 PF07969 Amidohydrolase family HVW55_19410 PF00696 Amino acid kinase family HVW55_19420 PF06545 Protein of unknown function (DUF1116) HVW55_19425 PF00549 CoA-ligase HVW55_19425 PF02629 CoA binding domain HVW55_19430 PF11392 Protein of unknown function (DUF2877) HVW55_19435 PF12796 Ankyrin repeats (3 copies) HVW55_19440 PF06496 Protein of unknown function (DUF1097) HVW55_19445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_19445 PF03466 LysR substrate binding domain HVW55_19450 PF00196 Bacterial regulatory proteins, luxR family HVW55_19450 PF00563 EAL domain HVW55_19455 PF03797 Autotransporter beta-domain HVW55_19460 PF02028 BCCT, betaine/carnitine/choline family transporter HVW55_19465 PF00440 Bacterial regulatory proteins, tetR family HVW55_19465 PF13977 BetI-type transcriptional repressor, C-terminal HVW55_19470 PF00171 Aldehyde dehydrogenase family HVW55_19475 PF00732 GMC oxidoreductase HVW55_19475 PF05199 GMC oxidoreductase HVW55_19480 PF00589 Phage integrase family HVW55_19485 PF00563 EAL domain HVW55_19485 PF00196 Bacterial regulatory proteins, luxR family HVW55_19500 PF03212 Pertactin HVW55_19500 PF03797 Autotransporter beta-domain HVW55_19510 PF02589 LUD domain HVW55_19515 PF13183 4Fe-4S dicluster domain HVW55_19515 PF11870 Domain of unknown function (DUF3390) HVW55_19515 PF02589 LUD domain HVW55_19520 PF02754 Cysteine-rich domain HVW55_19525 PF12852 Cupin HVW55_19525 PF12833 Helix-turn-helix domain HVW55_19530 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_19530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HVW55_19535 PF07338 Protein of unknown function (DUF1471) HVW55_19540 PF04224 Protein of unknown function, DUF417 HVW55_19545 PF00248 Aldo/keto reductase family HVW55_19550 PF12833 Helix-turn-helix domain HVW55_19555 PF11924 Inverse autotransporter, beta-domain HVW55_19560 PF00248 Aldo/keto reductase family HVW55_19565 PF00248 Aldo/keto reductase family HVW55_19570 PF03466 LysR substrate binding domain HVW55_19570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_19575 PF03466 LysR substrate binding domain HVW55_19580 PF12146 Serine aminopeptidase, S33 HVW55_19585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HVW55_19595 PF01197 Ribosomal protein L31 HVW55_19600 PF00444 Ribosomal protein L36 HVW55_19610 PF00196 Bacterial regulatory proteins, luxR family HVW55_19615 PF16449 Fimbrillin MatB HVW55_19620 PF18649 EcpB C-terminal domain HVW55_19625 PF15976 CS1-pili formation C-terminal HVW55_19625 PF16967 E-set like domain HVW55_19640 PF03692 Putative zinc- or iron-chelating domain HVW55_19645 PF07274 Protein of unknown function (DUF1440) HVW55_19650 PF01799 [2Fe-2S] binding domain HVW55_19650 PF00111 2Fe-2S iron-sulfur cluster binding domain HVW55_19650 PF10518 TAT (twin-arginine translocation) pathway signal sequence HVW55_19655 PF00941 FAD binding domain in molybdopterin dehydrogenase HVW55_19655 PF03450 CO dehydrogenase flavoprotein C-terminal domain HVW55_19660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HVW55_19660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HVW55_19665 PF02625 XdhC and CoxI family HVW55_19665 PF13478 XdhC Rossmann domain HVW55_19670 PF07690 Major Facilitator Superfamily HVW55_19675 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HVW55_19680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_19680 PF03466 LysR substrate binding domain HVW55_19690 PF00106 short chain dehydrogenase HVW55_19695 PF03466 LysR substrate binding domain HVW55_19710 PF13693 Winged helix-turn-helix DNA-binding HVW55_19785 PF17345 Family of unknown function (DUF5375) HVW55_19830 PF13356 Arm DNA-binding domain HVW55_19830 PF00589 Phage integrase family HVW55_19830 PF14659 Phage integrase, N-terminal SAM-like domain HVW55_19840 PF00171 Aldehyde dehydrogenase family HVW55_19845 PF00696 Amino acid kinase family HVW55_19845 PF01472 PUA domain HVW55_19850 PF00267 Gram-negative porin HVW55_19855 PF07417 Sigma factor-binding transcriptional regulator Crl HVW55_19860 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HVW55_19865 PF00156 Phosphoribosyl transferase domain HVW55_19870 PF01546 Peptidase family M20/M25/M40 HVW55_19870 PF07687 Peptidase dimerisation domain HVW55_19875 PF00472 RF-1 domain HVW55_19885 PF13673 Acetyltransferase (GNAT) domain HVW55_19890 PF00817 impB/mucB/samB family HVW55_19890 PF11798 IMS family HHH motif HVW55_19890 PF11799 impB/mucB/samB family C-terminal domain HVW55_19895 PF00691 OmpA family HVW55_19895 PF13677 Membrane MotB of proton-channel complex MotA/MotB HVW55_19900 PF00771 FHIPEP family HVW55_19910 PF00877 NlpC/P60 family HVW55_19915 PF04221 RelB antitoxin HVW55_19920 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HVW55_19925 PF03734 L,D-transpeptidase catalytic domain HVW55_19930 PF13230 Glutamine amidotransferases class-II HVW55_19935 PF13580 SIS domain HVW55_19940 PF09317 Domain of unknown function (DUF1974) HVW55_19940 PF02770 Acyl-CoA dehydrogenase, middle domain HVW55_19940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HVW55_19940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HVW55_19950 PF00795 Carbon-nitrogen hydrolase HVW55_19960 PF01609 Transposase DDE domain HVW55_19960 PF13808 DDE_Tnp_1-associated HVW55_19980 PF01527 Transposase HVW55_19980 PF00665 Integrase core domain HVW55_19980 PF13276 HTH-like domain HVW55_19985 PF05717 IS66 Orf2 like protein HVW55_19990 PF13007 Transposase C of IS166 homeodomain HVW55_19990 PF13817 IS66 C-terminal element HVW55_19990 PF03050 Transposase IS66 family HVW55_19990 PF13005 zinc-finger binding domain of transposase IS66 HVW55_20000 PF04717 Type VI secretion system, phage-baseplate injector HVW55_20005 PF05638 Type VI secretion system effector, Hcp HVW55_20060 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_20060 PF07724 AAA domain (Cdc48 subfamily) HVW55_20060 PF17871 AAA lid domain HVW55_20060 PF10431 C-terminal, D2-small domain, of ClpB protein HVW55_20115 PF00929 Exonuclease HVW55_20120 PF00075 RNase H HVW55_20125 PF08241 Methyltransferase domain HVW55_20130 PF16123 Hydroxyacylglutathione hydrolase C-terminus HVW55_20130 PF00753 Metallo-beta-lactamase superfamily HVW55_20135 PF01464 Transglycosylase SLT domain HVW55_20135 PF01476 LysM domain HVW55_20140 PF08241 Methyltransferase domain HVW55_20145 PF03372 Endonuclease/Exonuclease/phosphatase family HVW55_20150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_20150 PF03466 LysR substrate binding domain HVW55_20155 PF00248 Aldo/keto reductase family HVW55_20195 PF09383 NIL domain HVW55_20195 PF00005 ABC transporter HVW55_20200 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_20205 PF03180 NLPA lipoprotein HVW55_20210 PF16358 RcsF lipoprotein HVW55_20215 PF18389 TrmO C-terminal domain HVW55_20215 PF01980 tRNA-methyltransferase O HVW55_20220 PF03129 Anticodon binding domain HVW55_20220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HVW55_20220 PF04073 Aminoacyl-tRNA editing domain HVW55_20225 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family HVW55_20230 PF17185 NlpE C-terminal OB domain HVW55_20230 PF04170 NlpE N-terminal domain HVW55_20235 PF00472 RF-1 domain HVW55_20240 PF07152 YaeQ protein HVW55_20245 PF06786 Uncharacterised protein family (UPF0253) HVW55_20250 PF07073 Modulator of Rho-dependent transcription termination (ROF) HVW55_20255 PF01171 PP-loop family HVW55_20255 PF09179 TilS substrate binding domain HVW55_20255 PF11734 TilS substrate C-terminal domain HVW55_20260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HVW55_20270 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HVW55_20275 PF14579 Helix-hairpin-helix motif HVW55_20275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HVW55_20275 PF01336 OB-fold nucleic acid binding domain HVW55_20275 PF07733 Bacterial DNA polymerase III alpha NTPase domain HVW55_20275 PF02811 PHP domain HVW55_20280 PF01351 Ribonuclease HII HVW55_20285 PF02684 Lipid-A-disaccharide synthetase HVW55_20290 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_20290 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HVW55_20295 PF07977 FabA-like domain HVW55_20300 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_20300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HVW55_20305 PF03938 Outer membrane protein (OmpH-like) HVW55_20310 PF07244 Surface antigen variable number repeat HVW55_20310 PF01103 Surface antigen HVW55_20315 PF02163 Peptidase family M50 HVW55_20315 PF17820 PDZ domain HVW55_20325 PF01255 Putative undecaprenyl diphosphate synthase HVW55_20330 PF13288 DXP reductoisomerase C-terminal domain HVW55_20330 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HVW55_20330 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HVW55_20335 PF01765 Ribosome recycling factor HVW55_20340 PF00696 Amino acid kinase family HVW55_20345 PF00889 Elongation factor TS HVW55_20350 PF00318 Ribosomal protein S2 HVW55_20355 PF00557 Metallopeptidase family M24 HVW55_20360 PF01909 Nucleotidyltransferase domain HVW55_20360 PF01966 HD domain HVW55_20360 PF08335 GlnD PII-uridylyltransferase HVW55_20360 PF01842 ACT domain HVW55_20365 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HVW55_20365 PF14602 Hexapeptide repeat of succinyl-transferase HVW55_20365 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_20370 PF11944 Protein of unknown function (DUF3461) HVW55_20375 PF17853 GGDEF-like domain HVW55_20375 PF13556 PucR C-terminal helix-turn-helix domain HVW55_20375 PF05651 Putative sugar diacid recognition HVW55_20380 PF00595 PDZ domain HVW55_20385 PF13286 Phosphohydrolase-associated domain HVW55_20385 PF01966 HD domain HVW55_20390 PF01048 Phosphorylase superfamily HVW55_20395 PF01497 Periplasmic binding protein HVW55_20400 PF03458 UPF0126 domain HVW55_20405 PF01521 Iron-sulphur cluster biosynthesis HVW55_20415 PF00654 Voltage gated chloride channel HVW55_20420 PF00202 Aminotransferase class-III HVW55_20425 PF01032 FecCD transport family HVW55_20430 PF01497 Periplasmic binding protein HVW55_20435 PF00005 ABC transporter HVW55_20440 PF07715 TonB-dependent Receptor Plug Domain HVW55_20440 PF00593 TonB dependent receptor HVW55_20445 PF14814 Bifunctional transglycosylase second domain HVW55_20445 PF00905 Penicillin binding protein transpeptidase domain HVW55_20445 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal HVW55_20445 PF00912 Transglycosylase HVW55_20450 PF08482 ATP-dependent helicase C-terminal HVW55_20450 PF04408 Helicase associated domain (HA2) HVW55_20450 PF00270 DEAD/DEAH box helicase HVW55_20450 PF00271 Helicase conserved C-terminal domain HVW55_20455 PF02834 LigT like Phosphoesterase HVW55_20460 PF03749 Sugar fermentation stimulation protein RE domain HVW55_20460 PF17746 SfsA N-terminal OB domain HVW55_20465 PF01258 Prokaryotic dksA/traR C4-type zinc finger HVW55_20470 PF00749 tRNA synthetases class I (E and Q), catalytic domain HVW55_20475 PF01743 Poly A polymerase head domain HVW55_20475 PF12627 Probable RNA and SrmB- binding site of polymerase A HVW55_20475 PF12626 Polymerase A arginine-rich C-terminus HVW55_20480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HVW55_20490 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_20490 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_20495 PF13953 PapC C-terminal domain HVW55_20495 PF13954 PapC N-terminal domain HVW55_20495 PF00577 Outer membrane usher protein HVW55_20500 PF00419 Fimbrial protein HVW55_20505 PF00419 Fimbrial protein HVW55_20520 PF02548 Ketopantoate hydroxymethyltransferase HVW55_20525 PF02569 Pantoate-beta-alanine ligase HVW55_20535 PF04754 Putative transposase, YhgA-like HVW55_20540 PF02261 Aspartate decarboxylase HVW55_20545 PF01522 Polysaccharide deacetylase HVW55_20550 PF03610 PTS system fructose IIA component HVW55_20555 PF01061 ABC-2 type transporter HVW55_20560 PF00005 ABC transporter HVW55_20565 PF00484 Carbonic anhydrase HVW55_20570 PF00156 Phosphoribosyl transferase domain HVW55_20575 PF01011 PQQ enzyme repeat HVW55_20580 PF00394 Multicopper oxidase HVW55_20580 PF07731 Multicopper oxidase HVW55_20580 PF07732 Multicopper oxidase HVW55_20585 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) HVW55_20590 PF17284 Spermidine synthase tetramerisation domain HVW55_20595 PF02675 S-adenosylmethionine decarboxylase HVW55_20600 PF06062 Uncharacterised protein family (UPF0231) HVW55_20605 PF11791 Aconitate B N-terminal domain HVW55_20605 PF06434 Aconitate hydratase 2 N-terminus HVW55_20605 PF00330 Aconitase family (aconitate hydratase) HVW55_20610 PF11737 Protein of unknown function (DUF3300) HVW55_20615 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_20615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HVW55_20620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HVW55_20620 PF00364 Biotin-requiring enzyme HVW55_20620 PF02817 e3 binding domain HVW55_20625 PF00456 Transketolase, thiamine diphosphate binding domain HVW55_20625 PF17831 Pyruvate dehydrogenase E1 component middle domain HVW55_20630 PF00392 Bacterial regulatory proteins, gntR family HVW55_20630 PF07729 FCD domain HVW55_20635 PF00324 Amino acid permease HVW55_20640 PF17113 Regulatory signalling modulator protein AmpE HVW55_20645 PF01510 N-acetylmuramoyl-L-alanine amidase HVW55_20650 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HVW55_20650 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HVW55_20655 PF07963 Prokaryotic N-terminal methylation motif HVW55_20660 PF00437 Type II/IV secretion system protein HVW55_20660 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HVW55_20665 PF00482 Type II secretion system (T2SS), protein F HVW55_20670 PF00478 IMP dehydrogenase / GMP reductase domain HVW55_20680 PF01121 Dephospho-CoA kinase HVW55_20685 PF07072 Cell division protein HVW55_20690 PF03884 DNA gyrase inhibitor YacG HVW55_20695 PF00293 NUDIX domain HVW55_20700 PF02810 SEC-C motif HVW55_20700 PF01043 SecA preprotein cross-linking domain HVW55_20700 PF07516 SecA Wing and Scaffold domain HVW55_20700 PF07517 SecA DEAD-like domain HVW55_20705 PF06558 Secretion monitor precursor protein (SecM) HVW55_20710 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HVW55_20715 PF00091 Tubulin/FtsZ family, GTPase domain HVW55_20715 PF12327 FtsZ family, C-terminal domain HVW55_20720 PF02491 SHS2 domain inserted in FTSA HVW55_20725 PF08478 POTRA domain, FtsQ-type HVW55_20725 PF03799 Cell division protein FtsQ HVW55_20730 PF01820 D-ala D-ala ligase N-terminus HVW55_20730 PF07478 D-ala D-ala ligase C-terminus HVW55_20735 PF08245 Mur ligase middle domain HVW55_20735 PF02875 Mur ligase family, glutamate ligase domain HVW55_20735 PF01225 Mur ligase family, catalytic domain HVW55_20740 PF04101 Glycosyltransferase family 28 C-terminal domain HVW55_20740 PF03033 Glycosyltransferase family 28 N-terminal domain HVW55_20745 PF01098 Cell cycle protein HVW55_20750 PF02875 Mur ligase family, glutamate ligase domain HVW55_20750 PF08245 Mur ligase middle domain HVW55_20755 PF00953 Glycosyl transferase family 4 HVW55_20755 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HVW55_20760 PF01225 Mur ligase family, catalytic domain HVW55_20760 PF02875 Mur ligase family, glutamate ligase domain HVW55_20760 PF08245 Mur ligase middle domain HVW55_20765 PF08245 Mur ligase middle domain HVW55_20765 PF02875 Mur ligase family, glutamate ligase domain HVW55_20765 PF01225 Mur ligase family, catalytic domain HVW55_20770 PF00905 Penicillin binding protein transpeptidase domain HVW55_20770 PF03717 Penicillin-binding Protein dimerisation domain HVW55_20775 PF04999 Cell division protein FtsL HVW55_20780 PF01795 MraW methylase family HVW55_20785 PF02381 MraZ protein, putative antitoxin-like HVW55_20790 PF00356 Bacterial regulatory proteins, lacI family HVW55_20790 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HVW55_20800 PF10369 Small subunit of acetolactate synthase HVW55_20805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_20805 PF00205 Thiamine pyrophosphate enzyme, central domain HVW55_20805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_20815 PF03466 LysR substrate binding domain HVW55_20815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_20820 PF08054 Leucine operon leader peptide HVW55_20825 PF08502 LeuA allosteric (dimerisation) domain HVW55_20825 PF00682 HMGL-like HVW55_20830 PF00180 Isocitrate/isopropylmalate dehydrogenase HVW55_20835 PF00330 Aconitase family (aconitate hydratase) HVW55_20840 PF00694 Aconitase C-terminal domain HVW55_20850 PF12793 Sugar transport-related sRNA regulator N-term HVW55_20850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HVW55_20865 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_20870 PF00005 ABC transporter HVW55_20875 PF09335 SNARE associated Golgi protein HVW55_20880 PF12833 Helix-turn-helix domain HVW55_20880 PF02311 AraC-like ligand binding domain HVW55_20885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_20890 PF02610 L-arabinose isomerase HVW55_20890 PF11762 L-arabinose isomerase C-terminal domain HVW55_20895 PF00596 Class II Aldolase and Adducin N-terminal domain HVW55_20900 PF03104 DNA polymerase family B, exonuclease domain HVW55_20900 PF00136 DNA polymerase family B HVW55_20905 PF18337 RapA N-terminal Tudor like domain HVW55_20905 PF00271 Helicase conserved C-terminal domain HVW55_20905 PF00176 SNF2 family N-terminal domain HVW55_20905 PF18339 RapA N-terminal Tudor like domain 1 HVW55_20905 PF12137 RNA polymerase recycling family C-terminal HVW55_20910 PF00849 RNA pseudouridylate synthase HVW55_20925 PF05099 Tellurite resistance protein TerB HVW55_20925 PF00226 DnaJ domain HVW55_20930 PF03968 OstA-like protein HVW55_20930 PF04453 LPS transport system D HVW55_20935 PF00639 PPIC-type PPIASE domain HVW55_20935 PF09312 SurA N-terminal domain HVW55_20940 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HVW55_20945 PF00398 Ribosomal RNA adenine dimethylase HVW55_20950 PF04379 ApaG domain HVW55_20955 PF00149 Calcineurin-like phosphoesterase HVW55_20970 PF00186 Dihydrofolate reductase HVW55_20975 PF02254 TrkA-N domain HVW55_20975 PF00999 Sodium/hydrogen exchanger family HVW55_20980 PF02525 Flavodoxin-like fold HVW55_20985 PF00083 Sugar (and other) transporter HVW55_20995 PF01494 FAD binding domain HVW55_21000 PF01012 Electron transfer flavoprotein domain HVW55_21000 PF00766 Electron transfer flavoprotein FAD-binding domain HVW55_21005 PF01012 Electron transfer flavoprotein domain HVW55_21010 PF02028 BCCT, betaine/carnitine/choline family transporter HVW55_21015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HVW55_21015 PF02770 Acyl-CoA dehydrogenase, middle domain HVW55_21015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HVW55_21020 PF02515 CoA-transferase family III HVW55_21025 PF00501 AMP-binding enzyme HVW55_21025 PF13193 AMP-binding enzyme C-terminal domain HVW55_21030 PF00378 Enoyl-CoA hydratase/isomerase HVW55_21035 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_21040 PF07180 CaiF/GrlA transcriptional regulator HVW55_21045 PF02142 MGS-like domain HVW55_21045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HVW55_21045 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HVW55_21050 PF00117 Glutamine amidotransferase class-I HVW55_21050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HVW55_21055 PF05173 Dihydrodipicolinate reductase, C-terminus HVW55_21055 PF01113 Dihydrodipicolinate reductase, N-terminus HVW55_21060 PF01156 Inosine-uridine preferring nucleoside hydrolase HVW55_21065 PF02401 LytB protein HVW55_21070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HVW55_21075 PF01252 Signal peptidase (SPase) II HVW55_21080 PF08264 Anticodon-binding domain of tRNA HVW55_21080 PF06827 Zinc finger found in FPG and IleRS HVW55_21080 PF00133 tRNA synthetases class I (I, L, M and V) HVW55_21085 PF06574 FAD synthetase HVW55_21085 PF01687 Riboflavin kinase HVW55_21090 PF10837 Protein of unknown function (DUF2575) HVW55_21095 PF01649 Ribosomal protein S20 HVW55_21110 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_21110 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_21115 PF13954 PapC N-terminal domain HVW55_21115 PF00577 Outer membrane usher protein HVW55_21115 PF13953 PapC C-terminal domain HVW55_21125 PF03466 LysR substrate binding domain HVW55_21125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_21130 PF06965 Na+/H+ antiporter 1 HVW55_21135 PF01848 Hok/gef family HVW55_21140 PF00684 DnaJ central domain HVW55_21140 PF00226 DnaJ domain HVW55_21140 PF01556 DnaJ C terminal domain HVW55_21145 PF00012 Hsp70 protein HVW55_21150 PF10807 Protein of unknown function (DUF2541) HVW55_21155 PF03981 Ubiquinol-cytochrome C chaperone HVW55_21155 PF13099 Domain of unknown function (DUF3944) HVW55_21160 PF01184 GPR1/FUN34/yaaH family HVW55_21165 PF00994 Probable molybdopterin binding domain HVW55_21170 PF00923 Transaldolase/Fructose-6-phosphate aldolase HVW55_21175 PF01235 Sodium:alanine symporter family HVW55_21180 PF03883 Peroxide stress protein YaaA HVW55_21185 PF10697 Protein of unknown function (DUF2502) HVW55_21190 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_21190 PF14821 Threonine synthase N terminus HVW55_21195 PF00288 GHMP kinases N terminal domain HVW55_21195 PF08544 GHMP kinases C terminal HVW55_21200 PF00696 Amino acid kinase family HVW55_21200 PF03447 Homoserine dehydrogenase, NAD binding domain HVW55_21200 PF13840 ACT domain HVW55_21200 PF00742 Homoserine dehydrogenase HVW55_21200 PF01842 ACT domain HVW55_21205 PF08254 Threonine leader peptide HVW55_21210 PF00588 SpoU rRNA Methylase family HVW55_21220 PF00072 Response regulator receiver domain HVW55_21220 PF00486 Transcriptional regulatory protein, C terminal HVW55_21225 PF06123 Inner membrane protein CreD HVW55_21230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_21230 PF00512 His Kinase A (phospho-acceptor) domain HVW55_21230 PF00672 HAMP domain HVW55_21235 PF00072 Response regulator receiver domain HVW55_21235 PF00486 Transcriptional regulatory protein, C terminal HVW55_21240 PF05981 CreA protein HVW55_21245 PF12833 Helix-turn-helix domain HVW55_21245 PF06445 GyrI-like small molecule binding domain HVW55_21250 PF00300 Histidine phosphatase superfamily (branch 1) HVW55_21255 PF01931 Protein of unknown function DUF84 HVW55_21260 PF01371 Trp repressor protein HVW55_21265 PF14718 Soluble lytic murein transglycosylase L domain HVW55_21265 PF01464 Transglycosylase SLT domain HVW55_21270 PF12848 ABC transporter HVW55_21270 PF00005 ABC transporter HVW55_21275 PF03466 LysR substrate binding domain HVW55_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_21280 PF00248 Aldo/keto reductase family HVW55_21285 PF00106 short chain dehydrogenase HVW55_21300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HVW55_21305 PF13521 AAA domain HVW55_21305 PF01381 Helix-turn-helix HVW55_21310 PF18073 Rubredoxin metal binding domain HVW55_21315 PF18429 Domain of unknown function (DUF5609) HVW55_21320 PF10144 Bacterial virulence factor haemolysin HVW55_21325 PF03099 Biotin/lipoate A/B protein ligase family HVW55_21325 PF10437 Bacterial lipoate protein ligase C-terminus HVW55_21335 PF01048 Phosphorylase superfamily HVW55_21340 PF01676 Metalloenzyme superfamily HVW55_21345 PF00591 Glycosyl transferase family, a/b domain HVW55_21345 PF02885 Glycosyl transferase family, helical bundle domain HVW55_21345 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HVW55_21350 PF01791 DeoC/LacD family aldolase HVW55_21355 PF11230 Protein of unknown function (DUF3029) HVW55_21360 PF04055 Radical SAM superfamily HVW55_21365 PF01026 TatD related DNase HVW55_21370 PF01734 Patatin-like phospholipase HVW55_21375 PF07043 Protein of unknown function (DUF1328) HVW55_21380 PF04972 BON domain HVW55_21385 PF00009 Elongation factor Tu GTP binding domain HVW55_21385 PF03144 Elongation factor Tu domain 2 HVW55_21385 PF16658 Class II release factor RF3, C-terminal domain HVW55_21390 PF13419 Haloacid dehalogenase-like hydrolase HVW55_21395 PF00583 Acetyltransferase (GNAT) family HVW55_21400 PF03603 DNA polymerase III psi subunit HVW55_21405 PF05175 Methyltransferase small domain HVW55_21405 PF08468 Methyltransferase small domain N-terminal HVW55_21425 PF07256 Protein of unknown function (DUF1435) HVW55_21430 PF06276 Ferric iron reductase FhuF-like transporter HVW55_21430 PF11575 FhuF 2Fe-2S C-terminal domain HVW55_21435 PF00196 Bacterial regulatory proteins, luxR family HVW55_21440 PF00196 Bacterial regulatory proteins, luxR family HVW55_21445 PF06738 Putative threonine/serine exporter HVW55_21450 PF12821 Threonine/Serine exporter, ThrE HVW55_21455 PF17948 DnaT DNA-binding domain HVW55_21460 PF01695 IstB-like ATP binding protein HVW55_21465 PF10696 Protein of unknown function (DUF2501) HVW55_21470 PF00884 Sulfatase HVW55_21475 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_21475 PF00107 Zinc-binding dehydrogenase HVW55_21485 PF07690 Major Facilitator Superfamily HVW55_21490 PF00672 HAMP domain HVW55_21490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HVW55_21490 PF02203 Tar ligand binding domain homologue HVW55_21495 PF01047 MarR family HVW55_21500 PF01557 Fumarylacetoacetate (FAA) hydrolase family HVW55_21505 PF00171 Aldehyde dehydrogenase family HVW55_21510 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HVW55_21515 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase HVW55_21520 PF01557 Fumarylacetoacetate (FAA) hydrolase family HVW55_21525 PF03328 HpcH/HpaI aldolase/citrate lyase family HVW55_21530 PF07690 Major Facilitator Superfamily HVW55_21540 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal HVW55_21540 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal HVW55_21545 PF01613 Flavin reductase like domain HVW55_21550 PF13722 5TM C-terminal transporter carbon starvation CstA HVW55_21550 PF02554 Carbon starvation protein CstA HVW55_21555 PF04328 Selenoprotein, putative HVW55_21560 PF07683 Cobalamin synthesis protein cobW C-terminal domain HVW55_21560 PF02492 CobW/HypB/UreG, nucleotide-binding domain HVW55_21570 PF06568 Domain of unknown function (DUF1127) HVW55_21575 PF00155 Aminotransferase class I and II HVW55_21575 PF00392 Bacterial regulatory proteins, gntR family HVW55_21580 PF04754 Putative transposase, YhgA-like HVW55_21585 PF07690 Major Facilitator Superfamily HVW55_21590 PF04286 Protein of unknown function (DUF445) HVW55_21595 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HVW55_21600 PF01869 BadF/BadG/BcrA/BcrD ATPase family HVW55_21605 PF11823 Protein of unknown function (DUF3343) HVW55_21615 PF06977 SdiA-regulated HVW55_21620 PF06779 Uncharacterised MFS-type transporter YbfB HVW55_21625 PF09134 Invasin, domain 3 HVW55_21625 PF11924 Inverse autotransporter, beta-domain HVW55_21625 PF02369 Bacterial Ig-like domain (group 1) HVW55_21630 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family HVW55_21635 PF07670 Nucleoside recognition HVW55_21640 PF07670 Nucleoside recognition HVW55_21645 PF01979 Amidohydrolase family HVW55_21650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_21650 PF03466 LysR substrate binding domain HVW55_21655 PF04965 Gene 25-like lysozyme HVW55_21665 PF10887 Protein of unknown function (DUF2686) HVW55_21670 PF07729 FCD domain HVW55_21670 PF00392 Bacterial regulatory proteins, gntR family HVW55_21675 PF01232 Mannitol dehydrogenase Rossmann domain HVW55_21675 PF08125 Mannitol dehydrogenase C-terminal domain HVW55_21680 PF03786 D-mannonate dehydratase (UxuA) HVW55_21685 PF02447 GntP family permease HVW55_21690 PF09160 FimH, mannose binding HVW55_21690 PF00419 Fimbrial protein HVW55_21700 PF00419 Fimbrial protein HVW55_21705 PF13953 PapC C-terminal domain HVW55_21705 PF00577 Outer membrane usher protein HVW55_21705 PF13954 PapC N-terminal domain HVW55_21710 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_21710 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_21715 PF00419 Fimbrial protein HVW55_21720 PF00419 Fimbrial protein HVW55_21725 PF00589 Phage integrase family HVW55_21730 PF00589 Phage integrase family HVW55_21735 PF06178 Oligogalacturonate-specific porin protein (KdgM) HVW55_21745 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase HVW55_21755 PF00580 UvrD/REP helicase N-terminal domain HVW55_21755 PF13361 UvrD-like helicase C-terminal domain HVW55_21760 PF00270 DEAD/DEAH box helicase HVW55_21760 PF00271 Helicase conserved C-terminal domain HVW55_21760 PF09369 Domain of unknown function (DUF1998) HVW55_21770 PF00176 SNF2 family N-terminal domain HVW55_21770 PF18337 RapA N-terminal Tudor like domain HVW55_21770 PF18339 RapA N-terminal Tudor like domain 1 HVW55_21770 PF00271 Helicase conserved C-terminal domain HVW55_21770 PF12137 RNA polymerase recycling family C-terminal HVW55_21830 PF05872 Bacterial protein of unknown function (DUF853) HVW55_21835 PF03739 Lipopolysaccharide export system permease LptF/LptG HVW55_21840 PF03739 Lipopolysaccharide export system permease LptF/LptG HVW55_21845 PF02789 Cytosol aminopeptidase family, N-terminal domain HVW55_21845 PF00883 Cytosol aminopeptidase family, catalytic domain HVW55_21850 PF04364 DNA polymerase III chi subunit, HolC HVW55_21855 PF10458 Valyl tRNA synthetase tRNA binding arm HVW55_21855 PF00133 tRNA synthetases class I (I, L, M and V) HVW55_21855 PF08264 Anticodon-binding domain of tRNA HVW55_21860 PF05987 Bacterial protein of unknown function (DUF898) HVW55_21865 PF00583 Acetyltransferase (GNAT) family HVW55_21870 PF06877 Regulator of ribonuclease activity B HVW55_21875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HVW55_21875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HVW55_21885 PF04074 YhcH/YjgK/YiaL HVW55_21890 PF00440 Bacterial regulatory proteins, tetR family HVW55_21900 PF01042 Endoribonuclease L-PSP HVW55_21905 PF08052 PyrBI operon leader peptide HVW55_21910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HVW55_21910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HVW55_21915 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HVW55_21915 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HVW55_21920 PF01042 Endoribonuclease L-PSP HVW55_21925 PF00690 Cation transporter/ATPase, N-terminus HVW55_21925 PF00689 Cation transporting ATPase, C-terminus HVW55_21930 PF17059 MgtA leader peptide HVW55_21935 PF00356 Bacterial regulatory proteins, lacI family HVW55_21940 PF02378 Phosphotransferase system, EIIC HVW55_21940 PF00367 phosphotransferase system, EIIB HVW55_21945 PF11941 Domain of unknown function (DUF3459) HVW55_21945 PF00128 Alpha amylase, catalytic domain HVW55_21950 PF13597 Anaerobic ribonucleoside-triphosphate reductase HVW55_21950 PF03477 ATP cone domain HVW55_21960 PF04221 RelB antitoxin HVW55_21965 PF07361 Cytochrome b562 HVW55_21970 PF01523 Putative modulator of DNA gyrase HVW55_21975 PF04751 Protein of unknown function (DUF615) HVW55_21980 PF08245 Mur ligase middle domain HVW55_21980 PF02875 Mur ligase family, glutamate ligase domain HVW55_21980 PF01225 Mur ligase family, catalytic domain HVW55_21985 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HVW55_21990 PF02653 Branched-chain amino acid transport system / permease component HVW55_21995 PF02653 Branched-chain amino acid transport system / permease component HVW55_22000 PF00005 ABC transporter HVW55_22005 PF13407 Periplasmic binding protein domain HVW55_22010 PF00719 Inorganic pyrophosphatase HVW55_22015 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HVW55_22020 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HVW55_22025 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HVW55_22030 PF04357 TamB, inner membrane protein subunit of TAM complex HVW55_22035 PF17243 POTRA domain TamA domain 1 HVW55_22035 PF07244 Surface antigen variable number repeat HVW55_22035 PF01103 Surface antigen HVW55_22040 PF01625 Peptide methionine sulfoxide reductase HVW55_22045 PF01595 Cyclin M transmembrane N-terminal domain HVW55_22045 PF03471 Transporter associated domain HVW55_22045 PF00571 CBS domain HVW55_22050 PF06526 Protein of unknown function (DUF1107) HVW55_22055 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HVW55_22065 PF00459 Inositol monophosphatase family HVW55_22070 PF02872 5'-nucleotidase, C-terminal domain HVW55_22070 PF00149 Calcineurin-like phosphoesterase HVW55_22075 PF01638 HxlR-like helix-turn-helix HVW55_22080 PF05368 NmrA-like family HVW55_22085 PF00892 EamA-like transporter family HVW55_22090 PF01814 Hemerythrin HHE cation binding domain HVW55_22090 PF04405 Domain of Unknown function (DUF542) HVW55_22105 PF00324 Amino acid permease HVW55_22110 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HVW55_22110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HVW55_22115 PF04225 Opacity-associated protein A LysM-like domain HVW55_22115 PF08525 Opacity-associated protein A N-terminal motif HVW55_22125 PF12323 Helix-turn-helix domain HVW55_22125 PF01385 Probable transposase HVW55_22125 PF07282 Putative transposase DNA-binding domain HVW55_22140 PF10887 Protein of unknown function (DUF2686) HVW55_22145 PF01281 Ribosomal protein L9, N-terminal domain HVW55_22145 PF03948 Ribosomal protein L9, C-terminal domain HVW55_22150 PF01084 Ribosomal protein S18 HVW55_22155 PF00436 Single-strand binding protein family HVW55_22160 PF01250 Ribosomal protein S6 HVW55_22165 PF07338 Protein of unknown function (DUF1471) HVW55_22170 PF00596 Class II Aldolase and Adducin N-terminal domain HVW55_22175 PF01261 Xylose isomerase-like TIM barrel HVW55_22180 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HVW55_22185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_22190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_22195 PF03611 PTS system sugar-specific permease component HVW55_22205 PF08220 DeoR-like helix-turn-helix domain HVW55_22205 PF00455 DeoR C terminal sensor domain HVW55_22210 PF00326 Prolyl oligopeptidase family HVW55_22215 PF07338 Protein of unknown function (DUF1471) HVW55_22220 PF07338 Protein of unknown function (DUF1471) HVW55_22225 PF18158 Adaptive response protein AidB N-terminal domain HVW55_22225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HVW55_22225 PF02770 Acyl-CoA dehydrogenase, middle domain HVW55_22230 PF03738 Glutathionylspermidine synthase preATP-grasp HVW55_22235 PF06693 Protein of unknown function (DUF1190) HVW55_22240 PF03994 Domain of Unknown Function (DUF350) HVW55_22245 PF10679 Protein of unknown function (DUF2491) HVW55_22250 PF04012 PspA/IM30 family HVW55_22255 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) HVW55_22260 PF08666 SAF domain HVW55_22260 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HVW55_22265 PF07690 Major Facilitator Superfamily HVW55_22270 PF00701 Dihydrodipicolinate synthetase family HVW55_22275 PF09339 IclR helix-turn-helix domain HVW55_22275 PF01614 Bacterial transcriptional regulator HVW55_22280 PF00588 SpoU rRNA Methylase family HVW55_22280 PF08032 RNA 2'-O ribose methyltransferase substrate binding HVW55_22285 PF00575 S1 RNA binding domain HVW55_22285 PF08461 Ribonuclease R winged-helix domain HVW55_22285 PF17876 Cold shock domain HVW55_22285 PF00773 RNB domain HVW55_22285 PF08206 Ribonuclease B OB domain HVW55_22290 PF02082 Transcriptional regulator HVW55_22295 PF00709 Adenylosuccinate synthetase HVW55_22300 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HVW55_22305 PF01145 SPFH domain / Band 7 family HVW55_22310 PF01145 SPFH domain / Band 7 family HVW55_22310 PF12221 Bacterial membrane protein N terminal HVW55_22315 PF01926 50S ribosome-binding GTPase HVW55_22315 PF13167 GTP-binding GTPase N-terminal HVW55_22315 PF16360 GTP-binding GTPase Middle Region HVW55_22320 PF17209 Hfq protein HVW55_22330 PF01119 DNA mismatch repair protein, C-terminal domain HVW55_22330 PF08676 MutL C terminal dimerisation domain HVW55_22335 PF01520 N-acetylmuramoyl-L-alanine amidase HVW55_22340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HVW55_22345 PF03853 YjeF-related protein N-terminus HVW55_22345 PF01256 Carbohydrate kinase HVW55_22350 PF08331 Domain of unknown function (DUF1730) HVW55_22375 PF00929 Exonuclease HVW55_22380 PF03193 RsgA GTPase HVW55_22385 PF02666 Phosphatidylserine decarboxylase HVW55_22390 PF00924 Mechanosensitive ion channel HVW55_22390 PF12795 Mechanosensitive ion channel porin domain HVW55_22390 PF12794 Mechanosensitive ion channel inner membrane domain 1 HVW55_22395 PF13520 Amino acid permease HVW55_22400 PF00152 tRNA synthetases class II (D, K and N) HVW55_22405 PF02910 Fumarate reductase flavoprotein C-term HVW55_22405 PF00890 FAD binding domain HVW55_22410 PF13085 2Fe-2S iron-sulfur cluster binding domain HVW55_22410 PF13183 4Fe-4S dicluster domain HVW55_22415 PF02300 Fumarate reductase subunit C HVW55_22420 PF02313 Fumarate reductase subunit D HVW55_22425 PF00144 Beta-lactamase HVW55_22430 PF08212 Lipocalin-like domain HVW55_22435 PF00893 Small Multidrug Resistance protein HVW55_22440 PF08085 Entericidin EcnA/B family HVW55_22445 PF08085 Entericidin EcnA/B family HVW55_22450 PF08207 Elongation factor P (EF-P) KOW-like domain HVW55_22450 PF01132 Elongation factor P (EF-P) OB domain HVW55_22450 PF09285 Elongation factor P, C-terminal HVW55_22455 PF04055 Radical SAM superfamily HVW55_22460 PF15922 YjeJ-like HVW55_22465 PF13698 Domain of unknown function (DUF4156) HVW55_22470 PF00118 TCP-1/cpn60 chaperonin family HVW55_22475 PF00166 Chaperonin 10 Kd subunit HVW55_22480 PF13520 Amino acid permease HVW55_22485 PF04186 FxsA cytoplasmic membrane protein HVW55_22490 PF10415 Fumarase C C-terminus HVW55_22490 PF00206 Lyase HVW55_22495 PF03605 Anaerobic c4-dicarboxylate membrane transporter HVW55_22500 PF03091 CutA1 divalent ion tolerance protein HVW55_22505 PF02683 Cytochrome C biogenesis protein transmembrane region HVW55_22505 PF11412 Disulphide bond corrector protein DsbC HVW55_22520 PF18500 CadC C-terminal domain 1 HVW55_22520 PF00486 Transcriptional regulatory protein, C terminal HVW55_22525 PF13520 Amino acid permease HVW55_22530 PF01276 Orn/Lys/Arg decarboxylase, major domain HVW55_22530 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HVW55_22530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HVW55_22535 PF00854 POT family HVW55_22540 PF00152 tRNA synthetases class II (D, K and N) HVW55_22540 PF01336 OB-fold nucleic acid binding domain HVW55_22545 PF10753 Toxin GhoT_OrtT HVW55_22550 PF11080 Endoribonuclease GhoS HVW55_22555 PF14542 GCN5-related N-acetyl-transferase HVW55_22560 PF06902 Divergent 4Fe-4S mono-cluster HVW55_22565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_22565 PF00989 PAS fold HVW55_22565 PF17203 Single cache domain 3 HVW55_22565 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HVW55_22570 PF00072 Response regulator receiver domain HVW55_22575 PF03605 Anaerobic c4-dicarboxylate membrane transporter HVW55_22580 PF05681 Fumarate hydratase (Fumerase) HVW55_22580 PF05683 Fumarase C-terminus HVW55_22585 PF09997 Predicted membrane protein (DUF2238) HVW55_22595 PF02056 Family 4 glycosyl hydrolase HVW55_22595 PF11975 Family 4 glycosyl hydrolase C-terminal domain HVW55_22600 PF12833 Helix-turn-helix domain HVW55_22605 PF01276 Orn/Lys/Arg decarboxylase, major domain HVW55_22605 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HVW55_22605 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HVW55_22610 PF12833 Helix-turn-helix domain HVW55_22615 PF13520 Amino acid permease HVW55_22620 PF00884 Sulfatase HVW55_22620 PF08019 Phosphoethanolamine transferase EptA/EptB HVW55_22625 PF00072 Response regulator receiver domain HVW55_22625 PF00486 Transcriptional regulatory protein, C terminal HVW55_22630 PF00512 His Kinase A (phospho-acceptor) domain HVW55_22630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_22640 PF08946 Osmosensory transporter coiled coil HVW55_22640 PF00083 Sugar (and other) transporter HVW55_22645 PF13990 YjcZ-like protein HVW55_22650 PF00350 Dynamin family HVW55_22655 PF08274 PhnA Zinc-Ribbon HVW55_22655 PF03831 PhnA domain HVW55_22660 PF06983 3-demethylubiquinone-9 3-methyltransferase HVW55_22665 PF00005 ABC transporter HVW55_22675 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_22680 PF00392 Bacterial regulatory proteins, gntR family HVW55_22680 PF07702 UTRA domain HVW55_22685 PF06754 Phosphonate metabolism protein PhnG HVW55_22690 PF05845 Bacterial phosphonate metabolism protein (PhnH) HVW55_22695 PF05861 Bacterial phosphonate metabolism protein (PhnI) HVW55_22700 PF06007 Phosphonate metabolism protein PhnJ HVW55_22705 PF00005 ABC transporter HVW55_22710 PF00005 ABC transporter HVW55_22715 PF07969 Amidohydrolase family HVW55_22725 PF00583 Acetyltransferase (GNAT) family HVW55_22730 PF12706 Beta-lactamase superfamily domain HVW55_22745 PF08448 PAS fold HVW55_22745 PF00512 His Kinase A (phospho-acceptor) domain HVW55_22745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_22745 PF13188 PAS domain HVW55_22745 PF00072 Response regulator receiver domain HVW55_22750 PF00005 ABC transporter HVW55_22755 PF02653 Branched-chain amino acid transport system / permease component HVW55_22760 PF13407 Periplasmic binding protein domain HVW55_22770 PF01116 Fructose-bisphosphate aldolase class-II HVW55_22775 PF00294 pfkB family carbohydrate kinase HVW55_22780 PF00486 Transcriptional regulatory protein, C terminal HVW55_22780 PF00072 Response regulator receiver domain HVW55_22785 PF00753 Metallo-beta-lactamase superfamily HVW55_22785 PF14863 Alkyl sulfatase dimerisation HVW55_22785 PF14864 Alkyl sulfatase C-terminal HVW55_22790 PF17090 Uncharacterised protein family HVW55_22795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HVW55_22795 PF00529 HlyD membrane-fusion protein of T1SS HVW55_22800 PF04632 Fusaric acid resistance protein family HVW55_22815 PF08238 Sel1 repeat HVW55_22820 PF00375 Sodium:dicarboxylate symporter family HVW55_22830 PF03918 Cytochrome C biogenesis protein HVW55_22835 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HVW55_22835 PF01578 Cytochrome C assembly protein HVW55_22840 PF03916 Polysulphide reductase, NrfD HVW55_22845 PF00037 4Fe-4S binding domain HVW55_22845 PF13247 4Fe-4S dicluster domain HVW55_22850 PF13435 Cytochrome c554 and c-prime HVW55_22850 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HVW55_22855 PF02335 Cytochrome c552 HVW55_22860 PF16177 Acetyl-coenzyme A synthetase N-terminus HVW55_22860 PF13193 AMP-binding enzyme C-terminal domain HVW55_22860 PF00501 AMP-binding enzyme HVW55_22865 PF04341 Protein of unknown function, DUF485 HVW55_22870 PF00474 Sodium:solute symporter family HVW55_22875 PF00805 Pentapeptide repeats (8 copies) HVW55_22880 PF00999 Sodium/hydrogen exchanger family HVW55_22885 PF00860 Permease family HVW55_22890 PF00376 MerR family regulatory protein HVW55_22890 PF09278 MerR, DNA binding HVW55_22895 PF12833 Helix-turn-helix domain HVW55_22900 PF00563 EAL domain HVW55_22900 PF12792 CSS motif domain associated with EAL HVW55_22905 PF15940 Family of unknown function HVW55_22910 PF01609 Transposase DDE domain HVW55_22910 PF13006 Insertion element 4 transposase N-terminal HVW55_22915 PF00436 Single-strand binding protein family HVW55_22920 PF00005 ABC transporter HVW55_22920 PF17755 UvrA DNA-binding domain HVW55_22920 PF17760 UvrA interaction domain HVW55_22925 PF04237 YjbR HVW55_22930 PF01894 Uncharacterised protein family UPF0047 HVW55_22935 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HVW55_22945 PF00155 Aminotransferase class I and II HVW55_22950 PF13521 AAA domain HVW55_22950 PF01381 Helix-turn-helix HVW55_22955 PF04973 Nicotinamide mononucleotide transporter HVW55_22960 PF00842 Alanine racemase, C-terminal domain HVW55_22960 PF01168 Alanine racemase, N-terminal domain HVW55_22965 PF03796 DnaB-like helicase C terminal domain HVW55_22965 PF00772 DnaB-like helicase N terminal domain HVW55_22970 PF00107 Zinc-binding dehydrogenase HVW55_22970 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_22975 PF09583 Phage shock protein G (Phageshock_PspG) HVW55_22980 PF01207 Dihydrouridine synthase (Dus) HVW55_22985 PF10897 Protein of unknown function (DUF2713) HVW55_22990 PF01475 Ferric uptake regulator family HVW55_22995 PF05532 CsbD-like HVW55_23000 PF01554 MatE HVW55_23005 PF00717 Peptidase S24-like HVW55_23005 PF01726 LexA DNA binding domain HVW55_23010 PF01219 Prokaryotic diacylglycerol kinase HVW55_23015 PF01553 Acyltransferase HVW55_23020 PF01040 UbiA prenyltransferase family HVW55_23025 PF04345 Chorismate lyase HVW55_23030 PF13981 SopA-like central domain HVW55_23030 PF13599 Pentapeptide repeats (9 copies) HVW55_23035 PF07148 Maltose operon periplasmic protein precursor (MalM) HVW55_23040 PF02264 LamB porin HVW55_23045 PF17912 MalK OB fold domain HVW55_23045 PF00005 ABC transporter HVW55_23050 PF01547 Bacterial extracellular solute-binding protein HVW55_23055 PF14785 Maltose transport system permease protein MalF P2 domain HVW55_23055 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_23060 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_23065 PF00083 Sugar (and other) transporter HVW55_23070 PF06146 Phosphate-starvation-inducible E HVW55_23080 PF17089 Uncharacterised protein family HVW55_23085 PF06082 Exopolysaccharide biosynthesis protein YbjH HVW55_23090 PF06251 Capsule biosynthesis GfcC HVW55_23095 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF HVW55_23100 PF11106 Exopolysaccharide production protein YjbE HVW55_23105 PF00342 Phosphoglucose isomerase HVW55_23110 PF01842 ACT domain HVW55_23110 PF00696 Amino acid kinase family HVW55_23115 PF06414 Zeta toxin HVW55_23120 PF10127 RNA repair pathway DNA polymerase beta family HVW55_23130 PF11656 YjbD family (DUF3811) HVW55_23135 PF00849 RNA pseudouridylate synthase HVW55_23135 PF01479 S4 domain HVW55_23140 PF13936 Helix-turn-helix domain HVW55_23140 PF04198 Putative sugar-binding domain HVW55_23145 PF00106 short chain dehydrogenase HVW55_23150 PF03610 PTS system fructose IIA component HVW55_23155 PF03830 PTS system sorbose subfamily IIB component HVW55_23160 PF03609 PTS system sorbose-specific iic component HVW55_23165 PF03613 PTS system mannose/fructose/sorbose family IID component HVW55_23170 PF08240 Alcohol dehydrogenase GroES-like domain HVW55_23170 PF00107 Zinc-binding dehydrogenase HVW55_23175 PF03575 Peptidase family S51 HVW55_23180 PF02690 Na+/Pi-cotransporter HVW55_23185 PF02965 Vitamin B12 dependent methionine synthase, activation domain HVW55_23185 PF00809 Pterin binding enzyme HVW55_23185 PF02310 B12 binding domain HVW55_23185 PF02607 B12 binding domain HVW55_23185 PF02574 Homocysteine S-methyltransferase HVW55_23190 PF09339 IclR helix-turn-helix domain HVW55_23190 PF01614 Bacterial transcriptional regulator HVW55_23195 PF07906 ShET2 enterotoxin, N-terminal region HVW55_23200 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HVW55_23205 PF00463 Isocitrate lyase family HVW55_23210 PF01274 Malate synthase HVW55_23215 PF04204 Homoserine O-succinyltransferase HVW55_23220 PF13673 Acetyltransferase (GNAT) domain HVW55_23245 PF02142 MGS-like domain HVW55_23245 PF01808 AICARFT/IMPCHase bienzyme HVW55_23250 PF02844 Phosphoribosylglycinamide synthetase, N domain HVW55_23250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HVW55_23250 PF02843 Phosphoribosylglycinamide synthetase, C domain HVW55_23255 PF00158 Sigma-54 interaction domain HVW55_23255 PF00072 Response regulator receiver domain HVW55_23255 PF02954 Bacterial regulatory protein, Fis family HVW55_23260 PF00512 His Kinase A (phospho-acceptor) domain HVW55_23260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_23265 PF13801 Heavy-metal resistance HVW55_23270 PF07356 Protein of unknown function (DUF1481) HVW55_23275 PF00216 Bacterial DNA-binding protein HVW55_23280 PF04222 Protein of unknown function (DUF416) HVW55_23285 PF04493 Endonuclease V HVW55_23290 PF01208 Uroporphyrinogen decarboxylase (URO-D) HVW55_23295 PF00293 NUDIX domain HVW55_23295 PF09297 NADH pyrophosphatase zinc ribbon domain HVW55_23300 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HVW55_23305 PF01964 Radical SAM ThiC family HVW55_23305 PF13667 ThiC-associated domain HVW55_23310 PF02581 Thiamine monophosphate synthase HVW55_23315 PF00899 ThiF family HVW55_23320 PF02597 ThiS family HVW55_23325 PF05690 Thiazole biosynthesis protein ThiG HVW55_23330 PF04055 Radical SAM superfamily HVW55_23330 PF06968 Biotin and Thiamin Synthesis associated domain HVW55_23345 PF04998 RNA polymerase Rpb1, domain 5 HVW55_23345 PF05000 RNA polymerase Rpb1, domain 4 HVW55_23345 PF04983 RNA polymerase Rpb1, domain 3 HVW55_23345 PF00623 RNA polymerase Rpb1, domain 2 HVW55_23345 PF04997 RNA polymerase Rpb1, domain 1 HVW55_23350 PF04563 RNA polymerase beta subunit HVW55_23350 PF04561 RNA polymerase Rpb2, domain 2 HVW55_23350 PF04565 RNA polymerase Rpb2, domain 3 HVW55_23350 PF10385 RNA polymerase beta subunit external 1 domain HVW55_23350 PF00562 RNA polymerase Rpb2, domain 6 HVW55_23350 PF04560 RNA polymerase Rpb2, domain 7 HVW55_23355 PF00542 Ribosomal protein L7/L12 C-terminal domain HVW55_23355 PF16320 Ribosomal protein L7/L12 dimerisation domain HVW55_23360 PF00466 Ribosomal protein L10 HVW55_23365 PF00687 Ribosomal protein L1p/L10e family HVW55_23370 PF00298 Ribosomal protein L11, RNA binding domain HVW55_23370 PF03946 Ribosomal protein L11, N-terminal domain HVW55_23375 PF00467 KOW motif HVW55_23375 PF02357 Transcription termination factor nusG HVW55_23380 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HVW55_23385 PF03144 Elongation factor Tu domain 2 HVW55_23385 PF03143 Elongation factor Tu C-terminal domain HVW55_23385 PF00009 Elongation factor Tu GTP binding domain HVW55_23410 PF00485 Phosphoribulokinase / Uridine kinase family HVW55_23415 PF08279 HTH domain HVW55_23415 PF02237 Biotin protein ligase C terminal domain HVW55_23415 PF03099 Biotin/lipoate A/B protein ligase family HVW55_23420 PF01565 FAD binding domain HVW55_23420 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HVW55_23450 PF01177 Asp/Glu/Hydantoin racemase HVW55_23460 PF05958 tRNA (Uracil-5-)-methyltransferase HVW55_23465 PF07226 Protein of unknown function (DUF1422) HVW55_23470 PF00440 Bacterial regulatory proteins, tetR family HVW55_23475 PF07690 Major Facilitator Superfamily HVW55_23480 PF07687 Peptidase dimerisation domain HVW55_23480 PF01546 Peptidase family M20/M25/M40 HVW55_23485 PF07992 Pyridine nucleotide-disulphide oxidoreductase HVW55_23485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HVW55_23490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_23490 PF03466 LysR substrate binding domain HVW55_23495 PF00206 Lyase HVW55_23495 PF14698 Argininosuccinate lyase C-terminal HVW55_23500 PF00696 Amino acid kinase family HVW55_23505 PF02774 Semialdehyde dehydrogenase, dimerisation domain HVW55_23505 PF01118 Semialdehyde dehydrogenase, NAD binding domain HVW55_23510 PF07687 Peptidase dimerisation domain HVW55_23510 PF01546 Peptidase family M20/M25/M40 HVW55_23515 PF00311 Phosphoenolpyruvate carboxylase HVW55_23520 PF00884 Sulfatase HVW55_23525 PF12833 Helix-turn-helix domain HVW55_23530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_23535 PF04055 Radical SAM superfamily HVW55_23540 PF02901 Pyruvate formate lyase-like HVW55_23540 PF01228 Glycine radical HVW55_23545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_23555 PF00391 PEP-utilising enzyme, mobile domain HVW55_23555 PF05524 PEP-utilising enzyme, N-terminal HVW55_23555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_23555 PF00381 PTS HPr component phosphorylation site HVW55_23555 PF02896 PEP-utilising enzyme, TIM barrel domain HVW55_23560 PF00923 Transaldolase/Fructose-6-phosphate aldolase HVW55_23565 PF00465 Iron-containing alcohol dehydrogenase HVW55_23570 PF06940 Domain of unknown function (DUF1287) HVW55_23575 PF00892 EamA-like transporter family HVW55_23580 PF00141 Peroxidase HVW55_23585 PF02219 Methylenetetrahydrofolate reductase HVW55_23595 PF00742 Homoserine dehydrogenase HVW55_23595 PF03447 Homoserine dehydrogenase, NAD binding domain HVW55_23595 PF00696 Amino acid kinase family HVW55_23600 PF01053 Cys/Met metabolism PLP-dependent enzyme HVW55_23605 PF01340 Met Apo-repressor, MetJ HVW55_23610 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family HVW55_23615 PF01197 Ribosomal protein L31 HVW55_23620 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HVW55_23620 PF18074 Primosomal protein N C-terminal domain HVW55_23620 PF00271 Helicase conserved C-terminal domain HVW55_23620 PF00270 DEAD/DEAH box helicase HVW55_23620 PF17764 3′ DNA-binding domain (3′BD) HVW55_23625 PF00356 Bacterial regulatory proteins, lacI family HVW55_23630 PF05036 Sporulation related domain HVW55_23635 PF00227 Proteasome subunit HVW55_23640 PF07724 AAA domain (Cdc48 subfamily) HVW55_23640 PF10431 C-terminal, D2-small domain, of ClpB protein HVW55_23640 PF00004 ATPase family associated with various cellular activities (AAA) HVW55_23645 PF01040 UbiA prenyltransferase family HVW55_23650 PF03737 Aldolase/RraA HVW55_23665 PF06005 Cell division protein ZapB HVW55_23670 PF00230 Major intrinsic protein HVW55_23675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_23675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HVW55_23680 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HVW55_23685 PF00970 Oxidoreductase FAD-binding domain HVW55_23685 PF00175 Oxidoreductase NAD-binding domain HVW55_23690 PF00582 Universal stress protein family HVW55_23695 PF04175 Protein of unknown function (DUF406) HVW55_23700 PF05656 Protein of unknown function (DUF805) HVW55_23705 PF07305 Protein of unknown function (DUF1454) HVW55_23710 PF00121 Triosephosphate isomerase HVW55_23715 PF02611 CDP-diacylglycerol pyrophosphatase HVW55_23725 PF00365 Phosphofructokinase HVW55_23730 PF16916 Dimerisation domain of Zinc Transporter HVW55_23730 PF01545 Cation efflux family HVW55_23735 PF07813 LTXXQ motif family protein HVW55_23740 PF00072 Response regulator receiver domain HVW55_23740 PF00486 Transcriptional regulatory protein, C terminal HVW55_23745 PF00672 HAMP domain HVW55_23745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_23745 PF00512 His Kinase A (phospho-acceptor) domain HVW55_23745 PF16527 Two-component sensor protein CpxA, periplasmic domain HVW55_23750 PF03475 3-alpha domain HVW55_23750 PF03473 MOSC domain HVW55_23755 PF03812 2-keto-3-deoxygluconate permease HVW55_23760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HVW55_23760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HVW55_23765 PF06379 L-rhamnose-proton symport protein (RhaT) HVW55_23770 PF02311 AraC-like ligand binding domain HVW55_23770 PF12833 Helix-turn-helix domain HVW55_23775 PF02311 AraC-like ligand binding domain HVW55_23775 PF12833 Helix-turn-helix domain HVW55_23780 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HVW55_23780 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HVW55_23785 PF06134 L-rhamnose isomerase (RhaA) HVW55_23790 PF00596 Class II Aldolase and Adducin N-terminal domain HVW55_23795 PF05336 L-rhamnose mutarotase HVW55_23805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_23810 PF02378 Phosphotransferase system, EIIC HVW55_23810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HVW55_23815 PF05343 M42 glutamyl aminopeptidase HVW55_23820 PF08279 HTH domain HVW55_23820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HVW55_23825 PF12889 Protein of unknown function (DUF3829) HVW55_23830 PF02634 FdhD/NarQ family HVW55_23840 PF09163 Formate dehydrogenase N, transmembrane HVW55_23840 PF13247 4Fe-4S dicluster domain HVW55_23845 PF01292 Prokaryotic cytochrome b561 HVW55_23850 PF04216 Protein involved in formate dehydrogenase formation HVW55_23860 PF01402 Ribbon-helix-helix protein, copG family HVW55_23870 PF00583 Acetyltransferase (GNAT) family HVW55_23870 PF09500 Putative thioesterase (yiiD_Cterm) HVW55_23875 PF02580 D-Tyr-tRNA(Tyr) deacylase HVW55_23880 PF03631 Virulence factor BrkB HVW55_23885 PF13419 Haloacid dehalogenase-like hydrolase HVW55_23895 PF07690 Major Facilitator Superfamily HVW55_23900 PF01261 Xylose isomerase-like TIM barrel HVW55_23905 PF00392 Bacterial regulatory proteins, gntR family HVW55_23905 PF07702 UTRA domain HVW55_23915 PF03951 Glutamine synthetase, beta-Grasp domain HVW55_23915 PF00120 Glutamine synthetase, catalytic domain HVW55_23920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HVW55_23920 PF00989 PAS fold HVW55_23920 PF00512 His Kinase A (phospho-acceptor) domain HVW55_23925 PF00072 Response regulator receiver domain HVW55_23925 PF00158 Sigma-54 interaction domain HVW55_23925 PF02954 Bacterial regulatory protein, Fis family HVW55_23935 PF06969 HemN C-terminal domain HVW55_23935 PF04055 Radical SAM superfamily HVW55_23940 PF04220 Der GTPase activator (YihI) HVW55_23945 PF01926 50S ribosome-binding GTPase HVW55_23950 PF01367 5'-3' exonuclease, C-terminal SAM fold HVW55_23950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HVW55_23950 PF00476 DNA polymerase family A HVW55_23950 PF01612 3'-5' exonuclease HVW55_23955 PF01553 Acyltransferase HVW55_23960 PF06097 Bacterial protein of unknown function (DUF945) HVW55_23965 PF01323 DSBA-like thioredoxin domain HVW55_23970 PF01636 Phosphotransferase enzyme family HVW55_23975 PF06288 Protein of unknown function (DUF1040) HVW55_23980 PF12804 MobA-like NTP transferase domain HVW55_23985 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HVW55_24010 PF12724 Flavodoxin domain HVW55_24015 PF02386 Cation transport protein HVW55_24020 PF01205 Uncharacterized protein family UPF0029 HVW55_24020 PF09186 Domain of unknown function (DUF1949) HVW55_24025 PF00557 Metallopeptidase family M24 HVW55_24030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HVW55_24030 PF00378 Enoyl-CoA hydratase/isomerase HVW55_24030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HVW55_24035 PF02803 Thiolase, C-terminal domain HVW55_24035 PF00108 Thiolase, N-terminal domain HVW55_24040 PF00175 Oxidoreductase NAD-binding domain HVW55_24040 PF00970 Oxidoreductase FAD-binding domain HVW55_24045 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HVW55_24050 PF02357 Transcription termination factor nusG HVW55_24055 PF01026 TatD related DNase HVW55_24060 PF00902 Sec-independent protein translocase protein (TatC) HVW55_24070 PF02416 mttA/Hcf106 family HVW55_24075 PF03109 ABC1 family HVW55_24080 PF02036 SCP-2 sterol transfer family HVW55_24085 PF01209 ubiE/COQ5 methyltransferase family HVW55_24090 PF02646 RmuC family HVW55_24095 PF01048 Phosphorylase superfamily HVW55_24100 PF01738 Dienelactone hydrolase family HVW55_24105 PF01717 Cobalamin-independent synthase, Catalytic domain HVW55_24105 PF08267 Cobalamin-independent synthase, N-terminal domain HVW55_24110 PF03466 LysR substrate binding domain HVW55_24110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_24115 PF00892 EamA-like transporter family HVW55_24125 PF12146 Serine aminopeptidase, S33 HVW55_24130 PF01810 LysE type translocator HVW55_24135 PF01810 LysE type translocator HVW55_24140 PF00570 HRDC domain HVW55_24140 PF00271 Helicase conserved C-terminal domain HVW55_24140 PF09382 RQC domain HVW55_24140 PF16124 RecQ zinc-binding HVW55_24140 PF00270 DEAD/DEAH box helicase HVW55_24145 PF02253 Phospholipase A1 HVW55_24150 PF03061 Thioesterase superfamily HVW55_24155 PF00892 EamA-like transporter family HVW55_24165 PF01544 CorA-like Mg2+ transporter protein HVW55_24180 PF01544 CorA-like Mg2+ transporter protein HVW55_24185 PF09992 Phosphodiester glycosidase HVW55_24190 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HVW55_24195 PF13361 UvrD-like helicase C-terminal domain HVW55_24195 PF00580 UvrD/REP helicase N-terminal domain HVW55_24205 PF00589 Phage integrase family HVW55_24205 PF02899 Phage integrase, N-terminal SAM-like domain HVW55_24210 PF04340 Protein of unknown function, DUF484 HVW55_24215 PF01678 Diaminopimelate epimerase HVW55_24220 PF13627 Prokaryotic lipoprotein-attachment site HVW55_24230 PF01491 Frataxin-like domain HVW55_24235 PF01295 Adenylate cyclase, class-I HVW55_24235 PF12633 Adenylate cyclase NT domain HVW55_24240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HVW55_24240 PF03900 Porphobilinogen deaminase, C-terminal domain HVW55_24245 PF02602 Uroporphyrinogen-III synthase HemD HVW55_24250 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HVW55_24255 PF07219 HemY protein N-terminus HVW55_24255 PF07719 Tetratricopeptide repeat HVW55_24260 PF00884 Sulfatase HVW55_24265 PF13186 Iron-sulfur cluster-binding domain HVW55_24265 PF04055 Radical SAM superfamily HVW55_24290 PF00324 Amino acid permease HVW55_24295 PF03808 Glycosyl transferase WecB/TagA/CpsF family HVW55_24300 PF06899 WzyE protein, O-antigen assembly polymerase HVW55_24305 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 HVW55_24310 PF01943 Polysaccharide biosynthesis protein HVW55_24315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HVW55_24325 PF00483 Nucleotidyl transferase HVW55_24330 PF16363 GDP-mannose 4,6 dehydratase HVW55_24335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HVW55_24335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HVW55_24335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HVW55_24340 PF02350 UDP-N-acetylglucosamine 2-epimerase HVW55_24345 PF02706 Chain length determinant protein HVW55_24350 PF00953 Glycosyl transferase family 4 HVW55_24355 PF07498 Rho termination factor, N-terminal domain HVW55_24355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HVW55_24355 PF07497 Rho termination factor, RNA-binding domain HVW55_24365 PF00085 Thioredoxin HVW55_24370 PF00270 DEAD/DEAH box helicase HVW55_24370 PF00271 Helicase conserved C-terminal domain HVW55_24375 PF02541 Ppx/GppA phosphatase family HVW55_24380 PF00580 UvrD/REP helicase N-terminal domain HVW55_24380 PF13361 UvrD-like helicase C-terminal domain HVW55_24385 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HVW55_24395 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HVW55_24395 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HVW55_24400 PF03466 LysR substrate binding domain HVW55_24400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_24405 PF00291 Pyridoxal-phosphate dependent enzyme HVW55_24405 PF00585 C-terminal regulatory domain of Threonine dehydratase HVW55_24410 PF00920 Dehydratase family HVW55_24415 PF01063 Amino-transferase class IV HVW55_24425 PF00205 Thiamine pyrophosphate enzyme, central domain HVW55_24425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HVW55_24425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HVW55_24435 PF08046 IlvGEDA operon leader peptide HVW55_24440 PF13335 Magnesium chelatase, subunit ChlI C-terminal HVW55_24440 PF01078 Magnesium chelatase, subunit ChlI HVW55_24445 PF04219 Protein of unknown function, DUF HVW55_24450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_24450 PF03466 LysR substrate binding domain HVW55_24485 PF00392 Bacterial regulatory proteins, gntR family HVW55_24485 PF07729 FCD domain HVW55_24490 PF07690 Major Facilitator Superfamily HVW55_24495 PF00356 Bacterial regulatory proteins, lacI family HVW55_24500 PF00294 pfkB family carbohydrate kinase HVW55_24505 PF13407 Periplasmic binding protein domain HVW55_24510 PF02653 Branched-chain amino acid transport system / permease component HVW55_24515 PF00005 ABC transporter HVW55_24520 PF05025 RbsD / FucU transport protein family HVW55_24525 PF02705 K+ potassium transporter HVW55_24530 PF07728 AAA domain (dynein-related subfamily) HVW55_24530 PF12592 Protein of unknown function (DUF3763) HVW55_24530 PF17868 AAA lid domain HVW55_24535 PF05762 VWA domain containing CoxE-like protein HVW55_24540 PF03590 Aspartate-ammonia ligase HVW55_24545 PF01037 Lrp/AsnC ligand binding domain HVW55_24550 PF00258 Flavodoxin HVW55_24555 PF01134 Glucose inhibited division protein A HVW55_24555 PF13932 GidA associated domain HVW55_24560 PF02527 rRNA small subunit methyltransferase G HVW55_24565 PF03899 ATP synthase I chain HVW55_24570 PF00119 ATP synthase A chain HVW55_24575 PF00137 ATP synthase subunit C HVW55_24580 PF00430 ATP synthase B/B' CF(0) HVW55_24585 PF00213 ATP synthase delta (OSCP) subunit HVW55_24590 PF02874 ATP synthase alpha/beta family, beta-barrel domain HVW55_24590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HVW55_24590 PF00306 ATP synthase alpha/beta chain, C terminal domain HVW55_24595 PF00231 ATP synthase HVW55_24600 PF02874 ATP synthase alpha/beta family, beta-barrel domain HVW55_24600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HVW55_24605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HVW55_24605 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HVW55_24610 PF12804 MobA-like NTP transferase domain HVW55_24610 PF00132 Bacterial transferase hexapeptide (six repeats) HVW55_24610 PF14602 Hexapeptide repeat of succinyl-transferase HVW55_24615 PF01380 SIS domain HVW55_24620 PF00419 Fimbrial protein HVW55_24625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_24625 PF02753 Pili assembly chaperone PapD, C-terminal domain HVW55_24630 PF13953 PapC C-terminal domain HVW55_24630 PF13954 PapC N-terminal domain HVW55_24630 PF00577 Outer membrane usher protein HVW55_24640 PF12849 PBP superfamily domain HVW55_24645 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_24650 PF00528 Binding-protein-dependent transport system inner membrane component HVW55_24655 PF00005 ABC transporter HVW55_24660 PF01895 PhoU domain HVW55_24665 PF03123 CAT RNA binding domain HVW55_24665 PF00874 PRD domain HVW55_24670 PF00367 phosphotransferase system, EIIB HVW55_24670 PF02378 Phosphotransferase system, EIIC HVW55_24670 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HVW55_24675 PF00232 Glycosyl hydrolase family 1 HVW55_24680 PF02264 LamB porin HVW55_24680 PF11471 Maltoporin periplasmic N-terminal extension HVW55_24685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HVW55_24685 PF00756 Putative esterase HVW55_24690 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HVW55_24710 PF13419 Haloacid dehalogenase-like hydrolase HVW55_24715 PF00860 Permease family HVW55_24720 PF03358 NADPH-dependent FMN reductase HVW55_24730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HVW55_24730 PF03466 LysR substrate binding domain HVW55_24735 PF07690 Major Facilitator Superfamily HVW55_24740 PF03222 Tryptophan/tyrosine permease family HVW55_24745 PF01212 Beta-eliminating lyase HVW55_24750 PF08053 Tryptophanase operon leader peptide HVW55_24760 PF12631 MnmE helical domain HVW55_24760 PF01926 50S ribosome-binding GTPase HVW55_24760 PF10396 GTP-binding protein TrmE N-terminus HVW55_24765 PF02096 60Kd inner membrane protein HVW55_24765 PF14849 YidC periplasmic domain HVW55_24770 PF01809 Putative membrane protein insertion efficiency factor HVW55_24775 PF00825 Ribonuclease P HVW55_24780 PF00468 Ribosomal protein L34 HVW55_24790 PF01051 Initiator Replication protein HVW55_24795 PF00589 Phage integrase family HVW55_24800 PF00561 alpha/beta hydrolase fold HVW55_24805 PF01278 Omptin family HVW55_24810 PF03797 Autotransporter beta-domain HVW55_24845 PF04519 Polymer-forming cytoskeletal HVW55_24855 PF00563 EAL domain HVW55_24855 PF00196 Bacterial regulatory proteins, luxR family HVW55_24870 PF01695 IstB-like ATP binding protein HVW55_24885 PF02432 Fimbrial, major and minor subunit HVW55_24895 PF17547 Family of unknown function (DUF5462) HVW55_24900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HVW55_24905 PF13954 PapC N-terminal domain HVW55_24905 PF00577 Outer membrane usher protein HVW55_24930 PF00939 Sodium:sulfate symporter transmembrane region HVW55_24935 PF03949 Malic enzyme, NAD binding domain HVW55_24935 PF00390 Malic enzyme, N-terminal domain HVW55_24965 PF02387 IncFII RepA protein family HVW55_24970 PF08048 Tap RepA1 leader peptide HVW55_24975 PF10723 Replication regulatory protein RepB HVW55_24990 PF00565 Staphylococcal nuclease homologue HVW55_25000 PF12602 Fertility inhibition protein N terminal HVW55_25000 PF04352 ProQ/FINO family HVW55_25005 PF00561 alpha/beta hydrolase fold HVW55_25010 PF05857 TraX protein HVW55_25015 PF18340 DNA relaxase TraI 2B/2B-like domain HVW55_25015 PF08751 TrwC relaxase HVW55_25015 PF07057 DNA helicase TraI HVW55_25015 PF18272 single-stranded DNA binding TraI N-terminal subdomain HVW55_25020 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HVW55_25025 PF01850 PIN domain HVW55_25030 PF12615 F sex factor protein N terminal HVW55_25030 PF10412 Type IV secretion-system coupling protein DNA-binding domain HVW55_25035 PF05818 Enterobacterial TraT complement resistance protein HVW55_25045 PF07916 TraG-like protein, N-terminal region HVW55_25050 PF06122 Conjugative relaxosome accessory transposon protein HVW55_25065 PF13728 F plasmid transfer operon protein HVW55_25070 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) HVW55_25085 PF13728 F plasmid transfer operon protein HVW55_25090 PF11100 Conjugal transfer protein TrbE HVW55_25095 PF06986 Type-1V conjugative transfer system mating pair stabilisation HVW55_25100 PF09673 Type-F conjugative transfer system pilin assembly protein HVW55_25105 PF06834 TraU protein HVW55_25110 PF12477 Sex factor F TraW protein N terminal HVW55_25115 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) HVW55_25120 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer HVW55_25125 PF01258 Prokaryotic dksA/traR C4-type zinc finger HVW55_25130 PF09676 Type IV conjugative transfer system lipoprotein (TraV) HVW55_25140 PF10894 Protein of unknown function (DUF2689) HVW55_25145 PF07296 TraP protein HVW55_25150 PF03743 Bacterial conjugation TrbI-like protein HVW55_25155 PF06586 TraK protein HVW55_25160 PF05309 TraE protein HVW55_25165 PF07178 TraL protein HVW55_25170 PF05513 TraA HVW55_25175 PF05509 TraY domain HVW55_25185 PF05261 TraM protein, DNA-binding HVW55_25190 PF01464 Transglycosylase SLT domain HVW55_25195 PF06067 Domain of unknown function (DUF932) HVW55_25215 PF01848 Hok/gef family HVW55_25220 PF06952 PsiA protein HVW55_25225 PF06290 Plasmid SOS inhibition protein (PsiB) HVW55_25230 PF02195 ParB-like nuclease domain HVW55_25235 PF06006 Bacterial protein of unknown function (DUF905) HVW55_25240 PF00436 Single-strand binding protein family HVW55_25255 PF07128 Protein of unknown function (DUF1380) HVW55_25260 PF03230 Antirestriction protein HVW55_25270 PF07128 Protein of unknown function (DUF1380) HVW55_25280 PF01555 DNA methylase HVW55_25295 PF02195 ParB-like nuclease domain HVW55_25295 PF18090 Centromere-binding protein HTH domain HVW55_25300 PF13614 AAA domain HVW55_25305 PF01051 Initiator Replication protein HVW55_25315 PF01845 CcdB protein HVW55_25320 PF07362 Post-segregation antitoxin CcdA HVW55_25330 PF07693 KAP family P-loop domain HVW55_25335 PF10137 Predicted nucleotide-binding protein containing TIR-like domain HVW55_25345 PF13817 IS66 C-terminal element HVW55_25345 PF03050 Transposase IS66 family HVW55_25345 PF13007 Transposase C of IS166 homeodomain HVW55_25345 PF13005 zinc-finger binding domain of transposase IS66 HVW55_25350 PF05717 IS66 Orf2 like protein HVW55_25355 PF13276 HTH-like domain HVW55_25355 PF01527 Transposase HVW55_25355 PF00665 Integrase core domain HVW55_25375 PF02402 Lysis protein HVW55_25380 PF01815 Rop protein