locus-tag	class	description
JNN61_00100	COG5301	cellulose 1,4-beta-cellobiosidase activity
JNN61_00105	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JNN61_00110	COG0500	methyltransferase
JNN61_00130	COG3685	Protein conserved in bacteria
JNN61_00135	COG3685	Protein conserved in bacteria
JNN61_00140	COG3729	General stress protein
JNN61_00145	COG0159	tryptophan synthase activity
JNN61_00155	COG0135	phosphoribosylanthranilate isomerase activity
JNN61_00155	COG0134	indole-3-glycerol-phosphate synthase activity
JNN61_00160	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JNN61_00160	COG0512	Glutamine amidotransferase of anthranilate synthase
JNN61_00165	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JNN61_00175	COG0613	PHP domain protein
JNN61_00180	COG0009	L-threonylcarbamoyladenylate synthase
JNN61_00185	COG4907	membrane protein (DUF2207)
JNN61_00190	COG1187	pseudouridine synthase activity
JNN61_00205	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JNN61_00210	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_00215	COG0616	signal peptide processing
JNN61_00225	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JNN61_00230	COG0583	DNA-binding transcription factor activity
JNN61_00250	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JNN61_00260	COG0671	phosphoesterase, PA-phosphatase related
JNN61_00265	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
JNN61_00270	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JNN61_00280	COG0023	Translation Initiation Factor
JNN61_00290	COG1349	DNA-binding transcription factor activity
JNN61_00300	COG5001	Diguanylate cyclase
JNN61_00315	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JNN61_00315	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JNN61_00320	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JNN61_00330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_00335	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JNN61_00345	COG2814	Major facilitator Superfamily
JNN61_00350	COG4172	Belongs to the ABC transporter superfamily
JNN61_00355	COG4172	Belongs to the ABC transporter superfamily
JNN61_00360	COG4171	peptide transport system, permease
JNN61_00365	COG4168	peptide transport system, permease
JNN61_00370	COG4166	transmembrane transport
JNN61_00380	COG0531	amino acid
JNN61_00390	COG0174	glutamine synthetase
JNN61_00395	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JNN61_00400	COG1917	Cupin 2, conserved barrel domain protein
JNN61_00400	COG1396	sequence-specific DNA binding
JNN61_00405	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_00410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JNN61_00415	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JNN61_00420	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JNN61_00425	COG1842	Phage shock protein A
JNN61_00435	COG1983	PspC domain protein
JNN61_00445	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JNN61_00450	COG3106	COG3106 Predicted ATPase
JNN61_00460	COG3283	Transcriptional regulator of aromatic amino acids metabolism
JNN61_00465	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JNN61_00470	COG4948	Mandelate Racemase Muconate Lactonizing
JNN61_00475	COG2866	Carboxypeptidase
JNN61_00480	COG0702	epimerase
JNN61_00485	COG1073	alpha beta
JNN61_00490	COG0583	DNA-binding transcription factor activity
JNN61_00495	COG4166	transmembrane transport
JNN61_00500	COG0668	transmembrane transport
JNN61_00505	COG3182	Iron-regulated membrane protein
JNN61_00510	COG0589	response to stress
JNN61_00515	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JNN61_00520	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JNN61_00525	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JNN61_00530	COG1473	amidohydrolase
JNN61_00535	COG1473	amidohydrolase
JNN61_00540	COG0583	DNA-binding transcription factor activity
JNN61_00545	COG2207	Transcriptional regulator
JNN61_00560	COG2840	Smr protein MutS2
JNN61_00565	COG3706	GGDEF domain
JNN61_00575	COG0513	Belongs to the DEAD box helicase family
JNN61_00585	COG0582	viral genome integration into host DNA
JNN61_00605	COG3723	Recombinational DNA repair protein, rece pathway
JNN61_00610	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JNN61_00640	COG4197	protein conserved in bacteria, prophage-related
JNN61_00655	COG1484	DNA-dependent DNA replication
JNN61_00660	COG1846	Transcriptional regulator
JNN61_00670	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JNN61_00710	COG3772	lysozyme
JNN61_00725	COG1475	DNA binding
JNN61_00805	COG1196	nuclear chromosome segregation
JNN61_00845	COG5301	cellulose 1,4-beta-cellobiosidase activity
JNN61_00870	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JNN61_00875	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JNN61_00880	COG1121	(ABC) transporter
JNN61_00890	COG0589	response to stress
JNN61_00895	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JNN61_00900	COG0674	pyruvate-flavodoxin oxidoreductase activity
JNN61_00900	COG1013	pyruvate-flavodoxin oxidoreductase activity
JNN61_00900	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JNN61_00900	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JNN61_00905	COG3042	response to heat
JNN61_00910	COG3187	Heat shock protein
JNN61_00915	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JNN61_00920	COG2911	Protein conserved in bacteria
JNN61_00930	COG3784	Protein of unknown function (DUF1318)
JNN61_00935	COG2207	Transcriptional regulator
JNN61_00940	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_00945	COG3733	amine oxidase
JNN61_00950	COG2030	dehydratase
JNN61_00950	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_00955	COG3396	Phenylacetate-CoA oxygenase
JNN61_00960	COG3460	Phenylacetate-CoA oxygenase
JNN61_00965	COG3396	Phenylacetate-CoA oxygenase
JNN61_00970	COG2151	metal-sulfur cluster biosynthetic enzyme
JNN61_00975	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JNN61_00980	COG1024	Enoyl-CoA hydratase
JNN61_00985	COG1024	Enoyl-CoA hydratase
JNN61_00990	COG1250	3-hydroxyacyl-CoA dehydrogenase
JNN61_00995	COG2050	protein possibly involved in aromatic compounds catabolism
JNN61_01000	COG0183	Belongs to the thiolase family
JNN61_01005	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
JNN61_01010	COG3327	negative regulation of DNA-templated transcription, initiation
JNN61_01015	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JNN61_01025	COG0667	Aldo Keto reductase
JNN61_01035	COG1643	Atp-dependent helicase
JNN61_01055	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JNN61_01060	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_01065	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JNN61_01070	COG3038	cytochrome b561
JNN61_01090	COG0840	transmembrane signaling receptor activity
JNN61_01095	COG0583	DNA-binding transcription factor activity
JNN61_01100	COG5383	Protein conserved in bacteria
JNN61_01110	COG2841	Protein conserved in bacteria
JNN61_01115	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JNN61_01120	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JNN61_01125	COG1275	C4-dicarboxylate transporter malic acid transport protein
JNN61_01130	COG0500	methyltransferase
JNN61_01140	COG3135	benzoate transporter
JNN61_01145	COG1396	sequence-specific DNA binding
JNN61_01150	COG0826	peptidase U32
JNN61_01160	COG1724	mRNA binding
JNN61_01165	COG1598	PFAM Uncharacterised protein family UPF0150
JNN61_01170	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JNN61_01175	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JNN61_01180	COG3842	ATPase activity
JNN61_01185	COG1176	ABC-type spermidine putrescine transport system, permease component I
JNN61_01190	COG1177	transmembrane transport
JNN61_01215	COG3238	Protein conserved in bacteria
JNN61_01220	COG1247	-acetyltransferase
JNN61_01225	COG2130	NADP-dependent
JNN61_01230	COG1802	Transcriptional regulator
JNN61_01240	COG4772	TonB-dependent receptor
JNN61_01245	COG3391	amine dehydrogenase activity
JNN61_01250	COG1113	amino acid transport
JNN61_01265	COG3209	COG3209 Rhs family protein
JNN61_01280	COG3706	GGDEF domain
JNN61_01280	COG4251	negative regulation of phosphorylation
JNN61_01280	COG2203	Gaf domain
JNN61_01280	COG5001	Diguanylate cyclase
JNN61_01285	COG2015	COG2015, Alkyl sulfatase and related hydrolases
JNN61_01295	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JNN61_01300	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JNN61_01305	COG0384	phenazine biosynthesis protein PhzF
JNN61_01310	COG2181	nitrate reductase activity
JNN61_01315	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JNN61_01320	COG1140	nitrate reductase beta subunit
JNN61_01325	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JNN61_01330	COG2223	nitrite transmembrane transporter activity
JNN61_01335	COG4886	Leucine-rich repeat (LRR) protein
JNN61_01340	COG4886	Leucine-rich repeat (LRR) protein
JNN61_01350	COG0697	spore germination
JNN61_01360	COG0437	4 iron, 4 sulfur cluster binding
JNN61_01365	COG2864	formate dehydrogenase
JNN61_01375	COG3093	addiction module antidote protein HigA
JNN61_01380	COG1064	alcohol dehydrogenase
JNN61_01400	COG1764	response to oxidative stress
JNN61_01405	COG4608	Belongs to the ABC transporter superfamily
JNN61_01410	COG0444	Belongs to the ABC transporter superfamily
JNN61_01415	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JNN61_01420	COG0601	transmembrane transport
JNN61_01425	COG0747	negative chemotaxis
JNN61_01430	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
JNN61_01435	COG2202	Pas domain
JNN61_01435	COG2200	EAL domain
JNN61_01435	COG2199	diguanylate cyclase activity
JNN61_01450	COG1649	PFAM Uncharacterised BCR, COG1649
JNN61_01455	COG0531	amino acid
JNN61_01460	COG0076	glutamate decarboxylase activity
JNN61_01465	COG0612	Peptidase, M16
JNN61_01470	COG4771	TonB-dependent receptor
JNN61_01475	COG4178	(ABC) transporter
JNN61_01485	COG0641	radical SAM
JNN61_01490	COG3119	arylsulfatase activity
JNN61_01505	COG0243	molybdopterin cofactor binding
JNN61_01510	COG3539	Fimbrial protein
JNN61_01515	COG3539	Fimbrial protein
JNN61_01520	COG3539	Fimbrial protein
JNN61_01525	COG3188	usher protein
JNN61_01535	COG3539	Fimbrial protein
JNN61_01555	COG0667	Aldo Keto reductase
JNN61_01570	COG0656	L-ascorbic acid biosynthetic process
JNN61_01600	COG3550	peptidyl-serine autophosphorylation
JNN61_01605	COG1396	sequence-specific DNA binding
JNN61_01660	COG4106	trans-aconitate 2-methyltransferase activity
JNN61_01665	COG3781	membrane
JNN61_01675	COG2199	diguanylate cyclase activity
JNN61_01685	COG2066	Belongs to the glutaminase family
JNN61_01690	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_01695	COG0583	DNA-binding transcription factor activity
JNN61_01715	COG1846	Transcriptional regulator
JNN61_01720	COG4977	sequence-specific DNA binding
JNN61_01730	COG2723	6-phospho-beta-galactosidase activity
JNN61_01740	COG1447	Phosphotransferase system cellobiose-specific component IIA
JNN61_01745	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JNN61_01755	COG2188	Transcriptional regulator
JNN61_01760	COG0697	spore germination
JNN61_01765	COG2814	Major facilitator Superfamily
JNN61_01775	COG3706	GGDEF domain
JNN61_01780	COG3111	PFAM Bacterial OB fold (BOF) protein
JNN61_01785	COG0339	signal peptide processing
JNN61_01790	COG4221	oxidoreductase activity
JNN61_01795	COG1802	Transcriptional regulator
JNN61_01805	COG0246	Mannitol dehydrogenase
JNN61_01810	COG0477	Major facilitator Superfamily
JNN61_01815	COG1063	alcohol dehydrogenase
JNN61_01820	COG4948	Mandelate Racemase Muconate Lactonizing
JNN61_01835	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JNN61_01850	COG0243	molybdopterin cofactor binding
JNN61_01855	COG0243	molybdopterin cofactor binding
JNN61_01860	COG0437	4 iron, 4 sulfur cluster binding
JNN61_01865	COG3302	dmso reductase anchor subunit
JNN61_01870	COG3381	protein complex oligomerization
JNN61_01880	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JNN61_01885	COG1940	carbohydrate kinase activity
JNN61_01890	COG0583	DNA-binding transcription factor activity
JNN61_01895	COG2814	Major facilitator Superfamily
JNN61_01910	COG3591	Belongs to the peptidase S1B family
JNN61_01925	COG0628	permease
JNN61_01930	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JNN61_01935	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JNN61_01945	COG0531	amino acid
JNN61_01955	COG3136	membrane protein required for alginate biosynthesis
JNN61_01960	COG0745	RESPONSE REGULATOR receiver
JNN61_01965	COG2205	protein histidine kinase activity
JNN61_01975	COG0114	fumarate hydratase activity
JNN61_01980	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_01980	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_01985	COG1482	cell wall glycoprotein biosynthetic process
JNN61_01990	COG5339	Protein conserved in bacteria
JNN61_02005	COG3250	beta-galactosidase activity
JNN61_02010	COG1309	transcriptional regulator
JNN61_02015	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_02020	COG1609	Transcriptional regulator
JNN61_02025	COG1263	PTS System
JNN61_02025	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_02030	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JNN61_02040	COG0673	inositol 2-dehydrogenase activity
JNN61_02080	COG4659	FMN binding
JNN61_02090	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JNN61_02095	COG3104	oligopeptide transport
JNN61_02100	COG0625	glutathione transferase activity
JNN61_02105	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JNN61_02120	COG3895	Periplasmic Protein
JNN61_02130	COG3133	Outer membrane lipoprotein
JNN61_02145	COG1566	PFAM secretion protein HlyD family protein
JNN61_02150	COG1289	transmembrane transporter activity
JNN61_02155	COG2032	superoxide dismutase activity
JNN61_02160	COG4989	oxidoreductase activity
JNN61_02165	COG3313	Fe-S protein
JNN61_02170	COG1309	transcriptional regulator
JNN61_02175	COG1902	pentaerythritol trinitrate reductase activity
JNN61_02180	COG0346	lactoylglutathione lyase activity
JNN61_02190	COG1201	RNA secondary structure unwinding
JNN61_02195	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JNN61_02200	COG0791	NLP P60 protein
JNN61_02205	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JNN61_02210	COG2814	Major facilitator Superfamily
JNN61_02225	COG0583	DNA-binding transcription factor activity
JNN61_02230	COG2814	Major facilitator Superfamily
JNN61_02235	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JNN61_02240	COG0307	riboflavin synthase, alpha
JNN61_02250	COG3468	outer membrane autotransporter barrel domain protein
JNN61_02270	COG4529	Protein conserved in bacteria
JNN61_02280	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
JNN61_02285	COG0437	4 iron, 4 sulfur cluster binding
JNN61_02295	COG2414	aldehyde ferredoxin oxidoreductase
JNN61_02300	COG0437	4 iron, 4 sulfur cluster binding
JNN61_02310	COG0469	pyruvate kinase activity
JNN61_02315	COG4238	major outer membrane lipoprotein
JNN61_02320	COG1376	ErfK ybiS ycfS ynhG family protein
JNN61_02335	COG0719	Fe-S assembly protein
JNN61_02340	COG0396	ATPase activity
JNN61_02345	COG0719	Fe-S assembly protein
JNN61_02350	COG0316	Belongs to the HesB IscA family
JNN61_02360	COG2050	protein possibly involved in aromatic compounds catabolism
JNN61_02365	COG0247	lactate metabolic process
JNN61_02365	COG0277	FAD linked oxidase domain protein
JNN61_02370	COG0628	permease
JNN61_02385	COG0738	Major facilitator superfamily
JNN61_02390	COG2271	Major facilitator Superfamily
JNN61_02405	COG4670	ketone body catabolic process
JNN61_02410	COG1960	acyl-CoA dehydrogenase activity
JNN61_02415	COG1917	Cupin 2, conserved barrel domain protein
JNN61_02415	COG2207	Transcriptional regulator
JNN61_02420	COG2086	electron transfer activity
JNN61_02425	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JNN61_02430	COG0644	oxidoreductase
JNN61_02435	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JNN61_02440	COG0318	PFAM AMP-dependent synthetase and ligase
JNN61_02445	COG0574	Belongs to the PEP-utilizing enzyme family
JNN61_02445	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JNN61_02455	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JNN61_02460	COG4256	Hemin uptake protein
JNN61_02470	COG2200	EAL domain
JNN61_02475	COG0791	NLP P60 protein
JNN61_02485	COG0386	Belongs to the glutathione peroxidase family
JNN61_02555	COG5301	cellulose 1,4-beta-cellobiosidase activity
JNN61_02590	COG1196	nuclear chromosome segregation
JNN61_02640	COG1030	water channel activity
JNN61_02660	COG4220	transposase activity
JNN61_02675	COG3772	lysozyme
JNN61_02685	COG2207	Transcriptional regulator
JNN61_02690	COG3272	Protein of unknown function (DUF1722)
JNN61_02735	COG2207	Transcriptional regulator
JNN61_02740	COG1881	PFAM PEBP family protein
JNN61_02745	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JNN61_02755	COG2076	Multidrug Resistance protein
JNN61_02855	COG3137	Salt-induced outer membrane protein
JNN61_02860	COG1105	Belongs to the carbohydrate kinase PfkB family
JNN61_02870	COG3001	Fructosamine kinase
JNN61_02880	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JNN61_02885	COG1988	membrane-bound metal-dependent
JNN61_02890	COG1823	symporter activity
JNN61_02905	COG0753	catalase activity
JNN61_02915	COG1486	melibiose metabolic process
JNN61_02920	COG1917	Cupin 2, conserved barrel domain protein
JNN61_02920	COG2169	Transcriptional regulator
JNN61_02925	COG1447	Phosphotransferase system cellobiose-specific component IIA
JNN61_02930	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JNN61_02935	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JNN61_02940	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JNN61_02950	COG0322	excinuclease ABC activity
JNN61_02960	COG3678	ATP-independent chaperone mediated protein folding
JNN61_02990	COG0708	Exodeoxyribonuclease III
JNN61_02995	COG0398	Pfam SNARE associated Golgi protein
JNN61_03005	COG0398	Pfam SNARE associated Golgi protein
JNN61_03010	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JNN61_03015	COG4134	Bacterial extracellular solute-binding protein
JNN61_03020	COG4135	transport system, permease component
JNN61_03025	COG4136	ATPase activity
JNN61_03030	COG2897	thiosulfate sulfurtransferase activity
JNN61_03035	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JNN61_03040	COG0494	nUDIX hydrolase
JNN61_03050	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JNN61_03055	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JNN61_03065	COG0778	Nitroreductase
JNN61_03070	COG0616	signal peptide processing
JNN61_03075	COG0252	asparaginase activity
JNN61_03080	COG1335	isochorismatase
JNN61_03085	COG2814	Major facilitator Superfamily
JNN61_03090	COG1349	DNA-binding transcription factor activity
JNN61_03095	COG0667	Aldo Keto reductase
JNN61_03100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_03105	COG0191	fructose-bisphosphate aldolase activity
JNN61_03110	COG1063	alcohol dehydrogenase
JNN61_03115	COG2271	Major facilitator Superfamily
JNN61_03120	COG1063	alcohol dehydrogenase
JNN61_03125	COG3139	Protein of unknown function (DUF1315)
JNN61_03135	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JNN61_03140	COG0676	glucose-6-phosphate 1-epimerase activity
JNN61_03145	COG0656	L-ascorbic acid biosynthetic process
JNN61_03150	COG3713	MltA-interacting MipA family protein
JNN61_03155	COG2766	serine protein kinase
JNN61_03165	COG2199	diguanylate cyclase activity
JNN61_03170	COG2199	diguanylate cyclase activity
JNN61_03175	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JNN61_03190	COG2207	Transcriptional regulator
JNN61_03195	COG2807	transmembrane transport
JNN61_03200	COG3189	MarR family transcriptional regulator
JNN61_03205	COG3042	response to heat
JNN61_03210	COG2199	diguanylate cyclase activity
JNN61_03210	COG2203	Gaf domain
JNN61_03225	COG2261	transglycosylase associated protein
JNN61_03235	COG3615	Tellurite resistance protein tehB
JNN61_03245	COG0583	DNA-binding transcription factor activity
JNN61_03250	COG0473	3-isopropylmalate dehydrogenase activity
JNN61_03255	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JNN61_03260	COG4638	Rieske (2fe-2S)
JNN61_03265	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JNN61_03270	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JNN61_03275	COG0318	PFAM AMP-dependent synthetase and ligase
JNN61_03280	COG3065	identical protein binding
JNN61_03285	COG1214	PFAM Peptidase M22, glycoprotease
JNN61_03290	COG1199	ATP-dependent helicase activity
JNN61_03295	COG0251	oxidation-reduction process
JNN61_03310	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JNN61_03320	COG1760	l-serine dehydratase
JNN61_03325	COG2200	EAL domain
JNN61_03330	COG1253	flavin adenine dinucleotide binding
JNN61_03335	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_03335	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_03340	COG3715	PTS system
JNN61_03345	COG3716	PTS system mannose fructose sorbose family IID component
JNN61_03360	COG2226	methyltransferase
JNN61_03390	COG1414	Transcriptional regulator
JNN61_03395	COG2814	Major facilitator Superfamily
JNN61_03405	COG0793	Belongs to the peptidase S41A family
JNN61_03415	COG1956	GAF domain-containing protein
JNN61_03420	COG2995	paraquat-inducible protein a
JNN61_03425	COG3008	intermembrane lipid transfer
JNN61_03445	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JNN61_03455	COG1276	copper resistance
JNN61_03460	COG2372	response to copper ion
JNN61_03470	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JNN61_03475	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JNN61_03480	COG1770	oligopeptidase
JNN61_03495	COG2979	Protein of unknown function (DUF533)
JNN61_03505	COG3141	response to X-ray
JNN61_03515	COG0800	Aldolase
JNN61_03520	COG0129	dihydroxy-acid dehydratase activity
JNN61_03525	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JNN61_03530	COG1737	Transcriptional regulator
JNN61_03535	COG0469	pyruvate kinase activity
JNN61_03540	COG1560	Kdo2-lipid A biosynthetic process
JNN61_03545	COG0739	heme binding
JNN61_03550	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JNN61_03560	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JNN61_03590	COG0217	transcriptional regulatory protein
JNN61_03595	COG0494	nUDIX hydrolase
JNN61_03605	COG1335	isochorismatase
JNN61_03610	COG1801	Protein of unknown function DUF72
JNN61_03615	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JNN61_03630	COG0243	molybdopterin cofactor binding
JNN61_03635	COG3005	denitrification pathway
JNN61_03645	COG3102	Protein conserved in bacteria
JNN61_03660	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JNN61_03665	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JNN61_03670	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JNN61_03675	COG0745	RESPONSE REGULATOR receiver
JNN61_03685	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JNN61_03690	COG0840	transmembrane signaling receptor activity
JNN61_03695	COG0840	transmembrane signaling receptor activity
JNN61_03700	COG0835	chemotaxis
JNN61_03705	COG0643	Histidine kinase
JNN61_03705	COG2198	Histidine kinase
JNN61_03710	COG1360	Flagellar Motor Protein
JNN61_03715	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JNN61_03730	COG0589	response to stress
JNN61_03740	COG1877	trehalose-phosphatase activity
JNN61_03745	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_03750	COG1129	ABC transporter
JNN61_03755	COG1879	ABC-type sugar transport system periplasmic component
JNN61_03760	COG1528	Iron-storage protein
JNN61_03780	COG1528	Iron-storage protein
JNN61_03790	COG0814	amino acid
JNN61_03795	COG3318	Belongs to the UPF0149 family
JNN61_03795	COG3012	SEC-C Motif Domain Protein
JNN61_03825	COG2197	response regulator
JNN61_03840	COG2197	response regulator
JNN61_03845	COG1126	abc transporter atp-binding protein
JNN61_03850	COG0765	amino acid transport
JNN61_03860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_03870	COG1191	sigma factor activity
JNN61_03880	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JNN61_03885	COG1516	flagellar protein fliS
JNN61_03895	COG0366	Alpha amylase catalytic
JNN61_03905	COG2391	methyltransferase activity
JNN61_03910	COG0425	Belongs to the sulfur carrier protein TusA family
JNN61_03915	COG2135	peptidase activity
JNN61_03935	COG1766	The M ring may be actively involved in energy transduction
JNN61_03940	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JNN61_03945	COG1317	bacterial-type flagellum organization
JNN61_03950	COG1157	protein secretion by the type III secretion system
JNN61_03955	COG2882	bacterial-type flagellum organization
JNN61_03960	COG3144	bacterial-type flagellum assembly
JNN61_03965	COG1580	Controls the rotational direction of flagella during chemotaxis
JNN61_03970	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JNN61_03975	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JNN61_03980	COG3190	flagellar
JNN61_03985	COG1338	Plays a role in the flagellum-specific transport system
JNN61_03990	COG1987	bacterial-type flagellum assembly
JNN61_03995	COG1684	flagellar biosynthetic protein fliR
JNN61_04000	COG2197	response regulator
JNN61_04025	COG5475	Uncharacterized small protein (DUF2158)
JNN61_04030	COG2354	Protein conserved in bacteria
JNN61_04035	COG0697	spore germination
JNN61_04040	COG3727	T/G mismatch-specific endonuclease activity
JNN61_04045	COG0270	DNA (cytosine-5-)-methyltransferase activity
JNN61_04050	COG1418	mRNA catabolic process
JNN61_04060	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JNN61_04070	COG2205	protein histidine kinase activity
JNN61_04075	COG0745	RESPONSE REGULATOR receiver
JNN61_04080	COG2351	hydroxyisourate hydrolase activity
JNN61_04095	COG3443	Belongs to the bacterial solute-binding protein 9 family
JNN61_04100	COG3038	cytochrome b561
JNN61_04120	COG0582	viral genome integration into host DNA
JNN61_04125	COG1169	isochorismate synthase
JNN61_04130	COG2814	Major facilitator Superfamily
JNN61_04135	COG1132	(ABC) transporter
JNN61_04150	COG3433	isochorismatase activity
JNN61_04150	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JNN61_04150	COG2226	methyltransferase
JNN61_04170	COG1021	2,3-dihydroxybenzoate-AMP ligase
JNN61_04175	COG4771	TonB-dependent receptor
JNN61_04180	COG1388	LysM domain
JNN61_04180	COG2373	Large extracellular alpha-helical protein
JNN61_04180	COG4932	domain protein
JNN61_04195	COG0477	Major facilitator Superfamily
JNN61_04200	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JNN61_04205	COG0217	transcriptional regulatory protein
JNN61_04215	COG0534	Mate efflux family protein
JNN61_04225	COG0583	DNA-binding transcription factor activity
JNN61_04230	COG0583	DNA-binding transcription factor activity
JNN61_04240	COG1376	ErfK ybiS ycfS ynhG family protein
JNN61_04270	COG1735	metal-dependent hydrolase with the TIM-barrel fold
JNN61_04315	COG4983	Phage plasmid primase, P4 family domain protein
JNN61_04325	COG3468	outer membrane autotransporter barrel domain protein
JNN61_04330	COG2020	methyltransferase activity
JNN61_04355	COG2003	Belongs to the UPF0758 family
JNN61_04400	COG1289	transmembrane transporter activity
JNN61_04410	COG1686	Belongs to the peptidase S11 family
JNN61_04415	COG2925	Exonuclease
JNN61_04420	COG0425	Belongs to the sulfur carrier protein TusA family
JNN61_04425	COG2391	methyltransferase activity
JNN61_04430	COG0531	amino acid
JNN61_04440	COG0583	DNA-binding transcription factor activity
JNN61_04445	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JNN61_04450	COG4115	mRNA cleavage
JNN61_04455	COG2161	toxin-antitoxin pair type II binding
JNN61_04480	COG0131	Imidazoleglycerol-phosphate dehydratase
JNN61_04480	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JNN61_04485	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JNN61_04505	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JNN61_04510	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JNN61_04515	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JNN61_04540	COG0463	Glycosyl transferase, family 2
JNN61_04550	COG1216	Glycosyl transferase, family 2
JNN61_04555	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JNN61_04560	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JNN61_04570	COG0438	transferase activity, transferring glycosyl groups
JNN61_04575	COG2327	Polysaccharide pyruvyl transferase
JNN61_04580	COG2244	polysaccharide biosynthetic process
JNN61_04585	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JNN61_04590	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JNN61_04595	COG0662	Cupin 2, conserved barrel domain protein
JNN61_04595	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
JNN61_04600	COG0297	glycogen (starch) synthase activity
JNN61_04605	COG1051	belongs to the nudix hydrolase family
JNN61_04610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JNN61_04615	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
JNN61_04620	COG0110	maltose O-acetyltransferase activity
JNN61_04625	COG1216	Glycosyl transferase, family 2
JNN61_04635	COG0438	transferase activity, transferring glycosyl groups
JNN61_04640	COG1045	serine acetyltransferase
JNN61_04645	COG0463	Glycosyl transferase, family 2
JNN61_04650	COG3206	protein involved in exopolysaccharide biosynthesis
JNN61_04650	COG0489	protein tyrosine kinase activity
JNN61_04655	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JNN61_04660	COG1596	polysaccharide export
JNN61_04665	COG1253	flavin adenine dinucleotide binding
JNN61_04670	COG2982	Protein involved in outer membrane biogenesis
JNN61_04680	COG0572	uridine kinase
JNN61_04685	COG3447	MASE1 domain protein
JNN61_04685	COG5002	protein histidine kinase activity
JNN61_04685	COG5001	Diguanylate cyclase
JNN61_04690	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JNN61_04695	COG0443	Heat shock 70 kDa protein
JNN61_04700	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
JNN61_04705	COG0631	protein serine/threonine phosphatase activity
JNN61_04710	COG4245	von Willebrand factor, type A
JNN61_04750	COG2205	protein histidine kinase activity
JNN61_04755	COG0745	RESPONSE REGULATOR receiver
JNN61_04765	COG0826	peptidase U32
JNN61_04785	COG1063	alcohol dehydrogenase
JNN61_04790	COG3775	system Galactitol-specific IIC component
JNN61_04795	COG3414	Phosphotransferase system galactitol-specific IIB component
JNN61_04800	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_04815	COG1830	Aldolase
JNN61_04820	COG2211	Major facilitator Superfamily
JNN61_04825	COG1397	ADP-ribosylglycohydrolase
JNN61_04830	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_04835	COG2188	Transcriptional regulator
JNN61_04840	COG3757	hydrolase, family 25
JNN61_04845	COG0351	phosphomethylpyrimidine kinase
JNN61_04865	COG5455	response to cobalt ion
JNN61_04870	COG3539	Fimbrial protein
JNN61_04875	COG3188	usher protein
JNN61_04880	COG3121	Chaperone
JNN61_04885	COG3539	Fimbrial protein
JNN61_04895	COG0489	protein tyrosine kinase activity
JNN61_04905	COG3831	ATPase activity
JNN61_04910	COG3831	ATPase activity
JNN61_04915	COG3831	ATPase activity
JNN61_04935	COG3552	Protein containing von Willebrand factor type A (VWA) domain
JNN61_04940	COG4715	Zinc finger, swim domain protein
JNN61_04945	COG4808	Protein conserved in bacteria
JNN61_04950	COG4807	Protein conserved in bacteria
JNN61_04955	COG3279	Response regulator of the LytR AlgR family
JNN61_04960	COG3275	phosphorelay sensor kinase activity
JNN61_04965	COG0789	Transcriptional regulator
JNN61_04975	COG1174	glycine betaine transport
JNN61_04980	COG1125	glycine betaine transport
JNN61_04985	COG1174	glycine betaine transport
JNN61_04990	COG1732	Glycine betaine
JNN61_04995	COG1472	Belongs to the glycosyl hydrolase 3 family
JNN61_05000	COG0277	FAD linked oxidase domain protein
JNN61_05005	COG1686	Belongs to the peptidase S11 family
JNN61_05015	COG0586	Pfam SNARE associated Golgi protein
JNN61_05020	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_05035	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JNN61_05045	COG1346	cytolysis
JNN61_05055	COG2949	membrane
JNN61_05065	COG0493	'glutamate synthase
JNN61_05070	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JNN61_05070	COG0167	dihydroorotate dehydrogenase activity
JNN61_05075	COG4211	Belongs to the binding-protein-dependent transport system permease family
JNN61_05080	COG1129	ABC transporter
JNN61_05085	COG1879	ABC-type sugar transport system periplasmic component
JNN61_05090	COG1609	Transcriptional regulator
JNN61_05095	COG2311	Membrane
JNN61_05110	COG4771	TonB-dependent receptor
JNN61_05115	COG0833	amino acid
JNN61_05120	COG0583	DNA-binding transcription factor activity
JNN61_05125	COG2855	membrane
JNN61_05135	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_05135	COG1522	sequence-specific DNA binding
JNN61_05140	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JNN61_05150	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JNN61_05155	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JNN61_05160	COG2313	pseudouridylate synthase activity
JNN61_05165	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_05170	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JNN61_05170	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_05170	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_05175	COG1105	Belongs to the carbohydrate kinase PfkB family
JNN61_05180	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_05180	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_05185	COG2814	Major facilitator Superfamily
JNN61_05200	COG0246	Mannitol dehydrogenase
JNN61_05205	COG0523	cobalamin synthesis protein
JNN61_05210	COG0671	phosphoesterase, PA-phosphatase related
JNN61_05215	COG0791	NLP P60 protein
JNN61_05220	COG2200	EAL domain
JNN61_05225	COG4166	transmembrane transport
JNN61_05230	COG4174	ABC transporter (Permease)
JNN61_05235	COG4239	(ABC) transporter, permease
JNN61_05240	COG4172	Belongs to the ABC transporter superfamily
JNN61_05250	COG2814	Major facilitator Superfamily
JNN61_05255	COG1187	pseudouridine synthase activity
JNN61_05260	COG1061	Type III restriction enzyme res subunit
JNN61_05280	COG3083	sulfuric ester hydrolase activity
JNN61_05290	COG3468	outer membrane autotransporter barrel domain protein
JNN61_05295	COG2197	response regulator
JNN61_05300	COG3088	subunit of a heme lyase
JNN61_05300	COG4235	cytochrome complex assembly
JNN61_05305	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JNN61_05310	COG1138	Cytochrome C-type biogenesis protein
JNN61_05320	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JNN61_05325	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JNN61_05330	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JNN61_05335	COG4133	protoheme IX ABC transporter activity
JNN61_05340	COG3005	denitrification pathway
JNN61_05345	COG3043	anaerobic respiration
JNN61_05350	COG0348	domain, Protein
JNN61_05355	COG0437	4 iron, 4 sulfur cluster binding
JNN61_05365	COG3062	negative regulation of establishment of protein localization
JNN61_05370	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_05370	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_05385	COG4615	Cyclic peptide transporter
JNN61_05390	COG3145	DNA-N1-methyladenine dioxygenase activity
JNN61_05395	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JNN61_05395	COG2169	Transcriptional regulator
JNN61_05400	COG1477	protein flavinylation
JNN61_05405	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JNN61_05410	COG2198	Histidine kinase
JNN61_05410	COG0642	Histidine kinase
JNN61_05415	COG2197	response regulator
JNN61_05420	COG0784	Response regulator, receiver
JNN61_05420	COG2205	protein histidine kinase activity
JNN61_05425	COG3852	Histidine kinase
JNN61_05430	COG2204	response regulator
JNN61_05435	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JNN61_05440	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JNN61_05445	COG2031	fatty acid transporter
JNN61_05450	COG0183	Belongs to the thiolase family
JNN61_05455	COG4676	Protein conserved in bacteria
JNN61_05460	COG5445	Predicted secreted protein (DUF2300)
JNN61_05465	COG2373	Large extracellular alpha-helical protein
JNN61_05470	COG3234	Protein of unknown function (DUF1175)
JNN61_05475	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
JNN61_05480	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JNN61_05490	COG3468	outer membrane autotransporter barrel domain protein
JNN61_05495	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JNN61_05500	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JNN61_05505	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JNN61_05510	COG3642	lipopolysaccharide core region biosynthetic process
JNN61_05515	COG2814	Major facilitator Superfamily
JNN61_05530	COG0584	glycerophosphoryl diester phosphodiesterase
JNN61_05535	COG2271	Major facilitator Superfamily
JNN61_05540	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JNN61_05550	COG0247	lactate metabolic process
JNN61_05555	COG5464	transposase or invertase
JNN61_05565	COG2271	Major facilitator Superfamily
JNN61_05575	COG1414	Transcriptional regulator
JNN61_05640	COG0318	PFAM AMP-dependent synthetase and ligase
JNN61_05650	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JNN61_05665	COG1169	isochorismate synthase
JNN61_05670	COG4575	ribosome binding
JNN61_05675	COG2153	protein acetylation
JNN61_05685	COG5160	protein modification by small protein removal
JNN61_05690	COG2234	aminopeptidase activity
JNN61_05710	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JNN61_05715	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JNN61_05725	COG0839	Belongs to the complex I subunit 6 family
JNN61_05740	COG1034	ATP synthesis coupled electron transport
JNN61_05745	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
JNN61_05750	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
JNN61_05770	COG0583	DNA-binding transcription factor activity
JNN61_05775	COG0436	Aminotransferase
JNN61_05785	COG0471	metal ion transport
JNN61_05785	COG0490	domain, Protein
JNN61_05790	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JNN61_05805	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JNN61_05810	COG0280	phosphate acetyltransferase
JNN61_05810	COG0857	belongs to the CobB CobQ family
JNN61_05815	COG1288	antiporter activity
JNN61_05820	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JNN61_05825	COG0622	Phosphoesterase
JNN61_05830	COG0625	glutathione transferase activity
JNN61_05835	COG0625	glutathione transferase activity
JNN61_05840	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JNN61_05845	COG1090	epimerase
JNN61_05850	COG5464	transposase or invertase
JNN61_05855	COG4598	ABC transporter
JNN61_05860	COG4160	amino acid transport
JNN61_05865	COG4215	(ABC) transporter
JNN61_05870	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_05875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_05880	COG0163	prenyltransferase activity
JNN61_05885	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JNN61_05890	COG1286	toxin biosynthetic process
JNN61_05895	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JNN61_05900	COG0285	dihydrofolate synthase activity
JNN61_05910	COG0586	Pfam SNARE associated Golgi protein
JNN61_05920	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JNN61_05935	COG2814	Major facilitator Superfamily
JNN61_05940	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JNN61_05955	COG3101	peptidyl-lysine hydroxylation
JNN61_05960	COG0730	response to heat
JNN61_05975	COG2890	protein-(glutamine-N5) methyltransferase activity
JNN61_05990	COG3539	Fimbrial protein
JNN61_05995	COG3539	Fimbrial protein
JNN61_06000	COG3539	Fimbrial protein
JNN61_06005	COG3121	Chaperone
JNN61_06010	COG3188	usher protein
JNN61_06015	COG3539	Fimbrial protein
JNN61_06020	COG2062	phosphohistidine phosphatase, SixA
JNN61_06035	COG3691	Protein conserved in bacteria
JNN61_06040	COG2067	long-chain fatty acid transport protein
JNN61_06050	COG2853	Lipoprotein
JNN61_06055	COG2116	formate transmembrane transporter activity
JNN61_06100	COG0477	Major facilitator Superfamily
JNN61_06105	COG1566	PFAM secretion protein HlyD family protein
JNN61_06110	COG2197	response regulator
JNN61_06115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_06115	COG2198	Histidine kinase
JNN61_06115	COG0784	Response regulator, receiver
JNN61_06115	COG2205	protein histidine kinase activity
JNN61_06120	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JNN61_06125	COG0679	Auxin Efflux Carrier
JNN61_06130	COG0028	Belongs to the TPP enzyme family
JNN61_06155	COG1560	Kdo2-lipid A biosynthetic process
JNN61_06165	COG0436	Aminotransferase
JNN61_06170	COG3275	phosphorelay sensor kinase activity
JNN61_06175	COG3279	Response regulator of the LytR AlgR family
JNN61_06180	COG2207	Transcriptional regulator
JNN61_06190	COG1363	Peptidase, m42
JNN61_06195	COG0006	proline dipeptidase activity
JNN61_06200	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_06205	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_06230	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JNN61_06235	COG2200	EAL domain
JNN61_06235	COG2199	diguanylate cyclase activity
JNN61_06250	COG3415	Transposase
JNN61_06295	COG0583	DNA-binding transcription factor activity
JNN61_06305	COG2211	Major facilitator Superfamily
JNN61_06310	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JNN61_06320	COG0583	DNA-binding transcription factor activity
JNN61_06325	COG0385	Bile acid
JNN61_06330	COG3530	Putative quorum-sensing-regulated virulence factor
JNN61_06350	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JNN61_06355	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_06360	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JNN61_06365	COG2190	(PTS) system
JNN61_06380	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JNN61_06385	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JNN61_06390	COG4208	sulfate ABC transporter
JNN61_06395	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JNN61_06400	COG4150	thiosulfate binding
JNN61_06405	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_06420	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_06420	COG1263	PTS System
JNN61_06425	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JNN61_06430	COG2837	iron assimilation
JNN61_06450	COG0860	N-Acetylmuramoyl-L-alanine amidase
JNN61_06460	COG2207	Transcriptional regulator
JNN61_06465	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
JNN61_06470	COG4816	utilization protein
JNN61_06480	COG4303	Ethanolamine ammonia lyase large subunit
JNN61_06485	COG4819	ethanolamine utilization protein
JNN61_06490	COG3192	ethanolamine utilization protein
JNN61_06495	COG1454	alcohol dehydrogenase
JNN61_06500	COG4820	ethanolamine utilization protein (EutJ)
JNN61_06505	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_06510	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
JNN61_06515	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
JNN61_06520	COG0280	phosphate acetyltransferase
JNN61_06525	COG4812	Cobalamin adenosyltransferase
JNN61_06530	COG4766	ethanolamine catabolic process
JNN61_06535	COG4917	ethanolamine utilization protein
JNN61_06540	COG4810	utilization protein
JNN61_06545	COG0281	malic enzyme
JNN61_06545	COG0280	phosphate acetyltransferase
JNN61_06550	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JNN61_06555	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JNN61_06560	COG5342	invasion associated locus B
JNN61_06570	COG0493	'glutamate synthase
JNN61_06570	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_06575	COG3850	Histidine kinase
JNN61_06580	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JNN61_06590	COG1393	Belongs to the ArsC family
JNN61_06605	COG0400	carboxylic ester hydrolase activity
JNN61_06615	COG2321	neutral zinc metallopeptidase
JNN61_06625	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JNN61_06635	COG2716	regulation of RNA biosynthetic process
JNN61_06640	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JNN61_06645	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_06650	COG0651	ATP synthesis coupled electron transport
JNN61_06655	COG0650	Formate hydrogenlyase subunit 4
JNN61_06660	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JNN61_06665	COG4237	Hydrogenase 4 membrane
JNN61_06670	COG0651	ATP synthesis coupled electron transport
JNN61_06675	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
JNN61_06675	COG3261	NADH dehydrogenase
JNN61_06680	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JNN61_06685	COG3260	NADH ubiquinone oxidoreductase 20
JNN61_06695	COG3604	Transcriptional regulator
JNN61_06700	COG2116	formate transmembrane transporter activity
JNN61_06705	COG0628	permease
JNN61_06710	COG4783	chaperone-mediated protein folding
JNN61_06715	COG1393	Belongs to the ArsC family
JNN61_06725	COG2233	PERMEase
JNN61_06740	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JNN61_06745	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JNN61_06750	COG0248	Ppx GppA phosphatase
JNN61_06755	COG2200	EAL domain
JNN61_06770	COG3133	Outer membrane lipoprotein
JNN61_06785	COG0516	GMP reductase activity
JNN61_06785	COG0517	IMP dehydrogenase activity
JNN61_06795	COG1645	bacterial-type flagellum-dependent swarming motility
JNN61_06810	COG2976	Protein conserved in bacteria
JNN61_06840	COG4953	penicillin-binding protein 1C
JNN61_06845	COG2373	Large extracellular alpha-helical protein
JNN61_06850	COG2897	thiosulfate sulfurtransferase activity
JNN61_06865	COG2975	iron-sulfur cluster assembly
JNN61_06870	COG0633	Ferredoxin
JNN61_06890	COG0822	iron-sulfur transferase activity
JNN61_06910	COG0483	inositol monophosphate 1-phosphatase activity
JNN61_06915	COG1073	alpha beta
JNN61_06920	COG3711	transcriptional antiterminator
JNN61_06925	COG2814	Major facilitator Superfamily
JNN61_06930	COG0583	DNA-binding transcription factor activity
JNN61_06935	COG4638	Rieske (2fe-2S)
JNN61_06960	COG2259	Doxx family
JNN61_06965	COG2017	converts alpha-aldose to the beta-anomer
JNN61_06970	COG1063	alcohol dehydrogenase
JNN61_06975	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_06980	COG1129	ABC transporter
JNN61_06985	COG1879	ABC-type sugar transport system periplasmic component
JNN61_06990	COG0457	Tetratricopeptide repeat
JNN61_06995	COG1940	carbohydrate kinase activity
JNN61_07005	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JNN61_07005	COG1017	nitric oxide dioxygenase activity
JNN61_07010	COG0347	Belongs to the P(II) protein family
JNN61_07015	COG2204	response regulator
JNN61_07020	COG3170	Tfp pilus assembly protein FimV
JNN61_07025	COG2205	protein histidine kinase activity
JNN61_07030	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JNN61_07030	COG0047	phosphoribosylformylglycinamidine synthase activity
JNN61_07045	COG0560	Phosphoserine phosphatase
JNN61_07050	COG1737	Transcriptional regulator
JNN61_07055	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_07070	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JNN61_07090	COG0681	Belongs to the peptidase S26 family
JNN61_07100	COG3086	response to oxidative stress
JNN61_07105	COG3026	antisigma factor binding
JNN61_07110	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
JNN61_07115	COG1595	DNA-templated transcription, initiation
JNN61_07125	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JNN61_07135	COG0513	Belongs to the DEAD box helicase family
JNN61_07140	COG0583	DNA-binding transcription factor activity
JNN61_07160	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JNN61_07165	COG3118	belongs to the thioredoxin family
JNN61_07175	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JNN61_07175	COG1042	CoA-binding domain protein
JNN61_07175	COG0045	succinate-CoA ligase (ADP-forming) activity
JNN61_07180	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JNN61_07185	COG5544	Lipoprotein
JNN61_07190	COG0477	Major facilitator Superfamily
JNN61_07220	COG0542	response to heat
JNN61_07230	COG0564	pseudouridine synthase activity
JNN61_07235	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JNN61_07240	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JNN61_07250	COG0077	Prephenate dehydratase
JNN61_07250	COG1605	Chorismate mutase
JNN61_07255	COG1605	Chorismate mutase
JNN61_07255	COG0287	Prephenate dehydrogenase
JNN61_07260	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JNN61_07275	COG2199	diguanylate cyclase activity
JNN61_07280	COG2885	chlorophyll binding
JNN61_07305	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JNN61_07310	COG4137	Cytochrome C assembly protein
JNN61_07315	COG4536	flavin adenine dinucleotide binding
JNN61_07330	COG0497	DNA recombination
JNN61_07335	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JNN61_07345	COG2867	negative regulation of translational initiation
JNN61_07360	COG3468	outer membrane autotransporter barrel domain protein
JNN61_07385	COG0366	Alpha amylase catalytic
JNN61_07395	COG0579	oxidoreductase
JNN61_07400	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_07405	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JNN61_07410	COG1113	amino acid transport
JNN61_07415	COG1802	Transcriptional regulator
JNN61_07420	COG1652	LysM domain
JNN61_07425	COG0401	homolog of Blt101
JNN61_07430	COG0640	Transcriptional regulator
JNN61_07435	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JNN61_07440	COG2916	Histone family protein nucleoid-structuring protein H-NS
JNN61_07455	COG4575	ribosome binding
JNN61_07460	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JNN61_07465	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JNN61_07470	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JNN61_07480	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JNN61_07485	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JNN61_07490	COG4175	Glycine betaine
JNN61_07495	COG4176	ABC-type proline glycine betaine transport system permease component
JNN61_07500	COG2113	Glycine betaine
JNN61_07505	COG2814	Major facilitator Superfamily
JNN61_07510	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JNN61_07520	COG1846	Transcriptional regulator
JNN61_07525	COG1566	PFAM secretion protein HlyD family protein
JNN61_07530	COG2814	Major facilitator Superfamily
JNN61_07545	COG1238	metal cluster binding
JNN61_07550	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JNN61_07580	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JNN61_07600	COG1546	Belongs to the CinA family
JNN61_07605	COG2951	lytic endotransglycosylase activity
JNN61_07610	COG3730	PTS system glucitol sorbitol-specific
JNN61_07615	COG3732	PTS system glucitol sorbitol-specific
JNN61_07625	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_07630	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_07635	COG1349	DNA-binding transcription factor activity
JNN61_07660	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
JNN61_07665	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_07670	COG1609	Transcriptional regulator
JNN61_07675	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_07675	COG1263	PTS System
JNN61_07680	COG2723	6-phospho-beta-galactosidase activity
JNN61_07685	COG5499	transcription regulator containing HTH domain
JNN61_07690	COG4680	protein conserved in bacteria
JNN61_07695	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JNN61_07705	COG3260	NADH ubiquinone oxidoreductase 20
JNN61_07710	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JNN61_07715	COG3261	NADH dehydrogenase
JNN61_07715	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
JNN61_07720	COG0650	Formate hydrogenlyase subunit 4
JNN61_07725	COG0651	ATP synthesis coupled electron transport
JNN61_07730	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_07740	COG0375	protein maturation
JNN61_07745	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JNN61_07750	COG0298	carbon dioxide binding
JNN61_07755	COG0409	Hydrogenase expression formation protein
JNN61_07760	COG0309	Hydrogenase expression formation protein (HypE)
JNN61_07765	COG3604	Transcriptional regulator
JNN61_07790	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JNN61_07795	COG1349	DNA-binding transcription factor activity
JNN61_07800	COG2084	Dehydrogenase
JNN61_07805	COG3395	kinase activity
JNN61_07810	COG0235	Class ii aldolase
JNN61_07815	COG3622	Belongs to the hyi family
JNN61_07820	COG2610	gluconate transmembrane transporter activity
JNN61_07830	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JNN61_07835	COG0163	prenyltransferase activity
JNN61_07845	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JNN61_07850	COG1388	LysM domain
JNN61_07850	COG4942	peptidase
JNN61_07905	COG2234	aminopeptidase activity
JNN61_07910	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JNN61_07915	COG1518	maintenance of DNA repeat elements
JNN61_07930	COG1857	crispr-associated protein
JNN61_07945	COG1203	CRISPR-associated helicase, Cas3
JNN61_07970	COG0720	synthase
JNN61_07975	COG0644	oxidoreductase
JNN61_07980	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JNN61_07985	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JNN61_07995	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JNN61_08000	COG2086	electron transfer activity
JNN61_08005	COG0477	Major facilitator Superfamily
JNN61_08010	COG0277	FAD linked oxidase domain protein
JNN61_08015	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_08020	COG2223	nitrite transmembrane transporter activity
JNN61_08025	COG1070	Carbohydrate kinase
JNN61_08030	COG0602	queuosine metabolic process
JNN61_08040	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JNN61_08055	COG3956	TIGRFAM MazG family protein
JNN61_08060	COG2337	Toxic component of a toxin-antitoxin (TA) module
JNN61_08065	COG2336	PFAM SpoVT AbrB
JNN61_08070	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JNN61_08080	COG3437	response regulator, receiver
JNN61_08080	COG2205	protein histidine kinase activity
JNN61_08080	COG3850	Histidine kinase
JNN61_08080	COG4999	Histidine kinase
JNN61_08085	COG4948	Mandelate Racemase Muconate Lactonizing
JNN61_08090	COG4948	Mandelate Racemase Muconate Lactonizing
JNN61_08095	COG2271	Major facilitator Superfamily
JNN61_08100	COG0716	FMN binding
JNN61_08105	COG0564	pseudouridine synthase activity
JNN61_08110	COG3098	single-species biofilm formation
JNN61_08125	COG1611	Belongs to the LOG family
JNN61_08130	COG0814	amino acid
JNN61_08135	COG1760	l-serine dehydratase
JNN61_08145	COG1454	alcohol dehydrogenase
JNN61_08150	COG0235	Class ii aldolase
JNN61_08155	COG0738	Major facilitator superfamily
JNN61_08165	COG1070	Carbohydrate kinase
JNN61_08175	COG1349	DNA-binding transcription factor activity
JNN61_08185	COG2363	Small membrane protein
JNN61_08190	COG0583	DNA-binding transcription factor activity
JNN61_08200	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JNN61_08205	COG2166	iron-sulfur cluster assembly
JNN61_08210	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JNN61_08215	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JNN61_08235	COG0860	N-Acetylmuramoyl-L-alanine amidase
JNN61_08240	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JNN61_08240	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JNN61_08245	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JNN61_08250	COG1074	ATP-dependent DNA helicase activity
JNN61_08260	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JNN61_08265	COG4967	type IV pilus modification protein PilV
JNN61_08275	COG4795	General secretion pathway protein
JNN61_08280	COG2165	general secretion pathway protein
JNN61_08295	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
JNN61_08310	COG0861	Integral membrane protein TerC family
JNN61_08320	COG0667	Aldo Keto reductase
JNN61_08335	COG1609	Transcriptional regulator
JNN61_08345	COG0583	DNA-binding transcription factor activity
JNN61_08350	COG1794	racemase activity, acting on amino acids and derivatives
JNN61_08355	COG2814	Major facilitator Superfamily
JNN61_08360	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_08370	COG0183	Belongs to the thiolase family
JNN61_08375	COG0814	amino acid
JNN61_08385	COG4942	peptidase
JNN61_08390	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JNN61_08395	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JNN61_08400	COG2080	2 iron, 2 sulfur cluster binding
JNN61_08405	COG3829	transcription factor binding
JNN61_08410	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JNN61_08415	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JNN61_08420	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JNN61_08430	COG0549	Belongs to the carbamate kinase family
JNN61_08435	COG3608	succinylglutamate desuccinylase aspartoacylase
JNN61_08435	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JNN61_08440	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JNN61_08445	COG2068	MobA-Related Protein
JNN61_08450	COG0493	'glutamate synthase
JNN61_08450	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_08455	COG0402	S-adenosylhomocysteine deaminase activity
JNN61_08460	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JNN61_08465	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JNN61_08465	COG2080	2 iron, 2 sulfur cluster binding
JNN61_08470	COG2233	PERMEase
JNN61_08475	COG0402	S-adenosylhomocysteine deaminase activity
JNN61_08480	COG2252	PERMEase
JNN61_08485	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_08490	COG0493	'glutamate synthase
JNN61_08490	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_08495	COG2233	PERMEase
JNN61_08515	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JNN61_08525	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JNN61_08530	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JNN61_08535	COG4974	Belongs to the 'phage' integrase family
JNN61_08540	COG0716	FMN binding
JNN61_08550	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JNN61_08560	COG1272	protein, Hemolysin III
JNN61_08570	COG2723	6-phospho-beta-galactosidase activity
JNN61_08595	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JNN61_08600	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JNN61_08605	COG0006	proline dipeptidase activity
JNN61_08625	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JNN61_08635	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JNN61_08655	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JNN61_08655	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JNN61_08665	COG2968	Membrane
JNN61_08670	COG1279	arginine transmembrane transporter activity
JNN61_08675	COG0668	transmembrane transport
JNN61_08680	COG0191	fructose-bisphosphate aldolase activity
JNN61_08715	COG1122	ATPase activity
JNN61_08720	COG1072	(Pantothenic acid kinase))
JNN61_08730	COG1494	fructose-1,6-bisphosphatase
JNN61_08735	COG1063	alcohol dehydrogenase
JNN61_08740	COG2213	PTS system mannitol-specific
JNN61_08745	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_08750	COG0330	HflC and HflK could
JNN61_08755	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JNN61_08760	COG0501	Belongs to the peptidase M48B family
JNN61_08775	COG1166	arginine decarboxylase activity
JNN61_08795	COG2814	Major facilitator Superfamily
JNN61_08805	COG2356	endonuclease I
JNN61_08810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JNN61_08815	COG0189	ligase activity
JNN61_08830	COG2805	Type II/IV secretion system protein
JNN61_08835	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JNN61_08840	COG0762	integral membrane protein
JNN61_08850	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JNN61_08855	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JNN61_08860	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JNN61_08865	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JNN61_08880	COG0252	asparaginase activity
JNN61_08895	COG3171	Protein conserved in bacteria
JNN61_08905	COG1194	a g-specific adenine glycosylase
JNN61_08920	COG2211	Major facilitator Superfamily
JNN61_08925	COG1982	Orn Lys Arg decarboxylase major
JNN61_08930	COG1811	Na channel or pump
JNN61_08940	COG0582	viral genome integration into host DNA
JNN61_09060	COG3468	outer membrane autotransporter barrel domain protein
JNN61_09070	COG2826	transposase and inactivated derivatives, IS30 family
JNN61_09120	COG4771	TonB-dependent receptor
JNN61_09145	COG0657	acetylesterase activity
JNN61_09145	COG2755	lipolytic protein G-D-S-L family
JNN61_09150	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
JNN61_09155	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JNN61_09165	COG2814	Major facilitator Superfamily
JNN61_09170	COG1940	carbohydrate kinase activity
JNN61_09175	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JNN61_09180	COG3385	transposase activity
JNN61_09190	COG3436	PFAM IS66 Orf2 family protein
JNN61_09200	COG4372	Transposase
JNN61_09235	COG4983	Phage plasmid primase, P4 family domain protein
JNN61_09245	COG3468	outer membrane autotransporter barrel domain protein
JNN61_09275	COG2003	Belongs to the UPF0758 family
JNN61_09385	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JNN61_09415	COG2165	general secretion pathway protein
JNN61_09420	COG1459	type II secretion system
JNN61_09425	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JNN61_09455	COG3064	Membrane
JNN61_09460	COG1620	l-lactate permease
JNN61_09465	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JNN61_09470	COG3193	protein, possibly involved in utilization of glycolate and propanediol
JNN61_09475	COG0247	lactate metabolic process
JNN61_09480	COG0277	FAD linked oxidase domain protein
JNN61_09485	COG0277	FAD linked oxidase domain protein
JNN61_09490	COG2186	Transcriptional regulator
JNN61_09495	COG0456	acetyltransferase
JNN61_09500	COG0318	PFAM AMP-dependent synthetase and ligase
JNN61_09510	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JNN61_09515	COG0156	8-amino-7-oxononanoate synthase activity
JNN61_09525	COG0795	lipopolysaccharide-transporting ATPase activity
JNN61_09530	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JNN61_09540	COG2244	polysaccharide biosynthetic process
JNN61_09545	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JNN61_09550	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JNN61_09555	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JNN61_09560	COG0306	phosphate transporter
JNN61_09565	COG0754	glutathionylspermidine amidase activity
JNN61_09570	COG0625	glutathione transferase activity
JNN61_09575	COG0298	carbon dioxide binding
JNN61_09585	COG1773	rubredoxin
JNN61_09590	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JNN61_09595	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
JNN61_09600	COG5557	Pfam Polysulphide reductase, NrfD
JNN61_09605	COG0437	4 iron, 4 sulfur cluster binding
JNN61_09610	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
JNN61_09625	COG0667	Aldo Keto reductase
JNN61_09635	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_09640	COG0848	biopolymer transport protein
JNN61_09645	COG0811	peptide transport
JNN61_09650	COG0626	cystathionine gamma-synthase activity
JNN61_09655	COG0586	Pfam SNARE associated Golgi protein
JNN61_09660	COG2207	Transcriptional regulator
JNN61_09665	COG1979	alcohol dehydrogenase
JNN61_09670	COG0656	L-ascorbic acid biosynthetic process
JNN61_09680	COG4238	major outer membrane lipoprotein
JNN61_09685	COG1032	radical SAM domain protein
JNN61_09690	COG2132	Multicopper oxidase
JNN61_09695	COG0204	Acyl-transferase
JNN61_09700	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JNN61_09705	COG4166	transmembrane transport
JNN61_09710	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
JNN61_09715	COG3111	PFAM Bacterial OB fold (BOF) protein
JNN61_09720	COG0745	RESPONSE REGULATOR receiver
JNN61_09725	COG0642	Histidine kinase
JNN61_09735	COG2249	NAD(P)H dehydrogenase (quinone) activity
JNN61_09740	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JNN61_09745	COG1737	Transcriptional regulator
JNN61_09755	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_09760	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_09765	COG1120	ATPase activity
JNN61_09770	COG4774	siderophore transport
JNN61_09775	COG0187	DNA topoisomerase II activity
JNN61_09780	COG3150	esterase
JNN61_09785	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JNN61_09790	COG3151	Protein conserved in bacteria
JNN61_09795	COG0494	nUDIX hydrolase
JNN61_09800	COG1538	Outer membrane efflux protein
JNN61_09810	COG0754	glutathionylspermidine amidase activity
JNN61_09820	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JNN61_09830	COG3384	dioxygenase
JNN61_09860	COG1585	Membrane protein implicated in regulation of membrane protease activity
JNN61_09865	COG2268	Band 7 protein
JNN61_09890	COG3025	triphosphatase activity
JNN61_09895	COG4991	sh3 domain protein
JNN61_09910	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JNN61_09925	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_09930	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_09945	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JNN61_09950	COG0358	DNA primase activity
JNN61_09955	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JNN61_09970	COG2375	cellular response to nickel ion
JNN61_09975	COG1695	Transcriptional regulator
JNN61_09980	COG0840	transmembrane signaling receptor activity
JNN61_09990	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JNN61_09995	COG1609	Transcriptional regulator
JNN61_10000	COG3250	beta-galactosidase activity
JNN61_10005	COG2731	YhcH YjgK YiaL family protein
JNN61_10010	COG0531	amino acid
JNN61_10020	COG3408	Glycogen debranching enzyme
JNN61_10020	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JNN61_10030	COG1902	pentaerythritol trinitrate reductase activity
JNN61_10030	COG0446	pyridine nucleotide-disulphide oxidoreductase
JNN61_10040	COG1451	nucleotide metabolic process
JNN61_10045	COG2949	membrane
JNN61_10050	COG0673	inositol 2-dehydrogenase activity
JNN61_10055	COG0861	Integral membrane protein TerC family
JNN61_10060	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JNN61_10070	COG2721	sulfolactate sulfo-lyase activity
JNN61_10080	COG2271	Major facilitator Superfamily
JNN61_10085	COG2186	Transcriptional regulator
JNN61_10090	COG0586	Pfam SNARE associated Golgi protein
JNN61_10100	COG1422	Protein of unknown function (DUF1090)
JNN61_10105	COG4575	ribosome binding
JNN61_10110	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
JNN61_10120	COG2259	Doxx family
JNN61_10125	COG0435	Glutathione S-transferase
JNN61_10130	COG3152	Membrane
JNN61_10135	COG3152	Membrane
JNN61_10140	COG0583	DNA-binding transcription factor activity
JNN61_10145	COG1741	Belongs to the pirin family
JNN61_10160	COG0814	amino acid
JNN61_10165	COG1760	l-serine dehydratase
JNN61_10170	COG0251	oxidation-reduction process
JNN61_10175	COG1882	Formate acetyltransferase
JNN61_10180	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JNN61_10190	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JNN61_10195	COG0583	DNA-binding transcription factor activity
JNN61_10220	COG1929	Belongs to the glycerate kinase type-1 family
JNN61_10225	COG2084	Dehydrogenase
JNN61_10235	COG2271	Major facilitator Superfamily
JNN61_10240	COG2721	sulfolactate sulfo-lyase activity
JNN61_10245	COG2002	toxin-antitoxin pair type II binding
JNN61_10255	COG1349	DNA-binding transcription factor activity
JNN61_10265	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_10275	COG3716	PTS system mannose fructose sorbose family IID component
JNN61_10280	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_10285	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JNN61_10290	COG2222	sugar isomerase
JNN61_10300	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_10305	COG3715	PTS system
JNN61_10310	COG3716	PTS system mannose fructose sorbose family IID component
JNN61_10315	COG0363	glucosamine-6-phosphate deaminase activity
JNN61_10320	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JNN61_10340	COG2823	Periplasmic or secreted lipoprotein
JNN61_10345	COG0701	Predicted permease
JNN61_10350	COG0702	epimerase
JNN61_10355	COG0693	protein deglycase activity
JNN61_10370	COG3153	acetyltransferase
JNN61_10375	COG3154	lipid carrier protein
JNN61_10380	COG0826	peptidase U32
JNN61_10385	COG0826	peptidase U32
JNN61_10390	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JNN61_10395	COG0814	amino acid
JNN61_10400	COG0513	Belongs to the DEAD box helicase family
JNN61_10440	COG0195	Participates in both transcription termination and antitermination
JNN61_10460	COG2194	sulfuric ester hydrolase activity
JNN61_10470	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JNN61_10480	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JNN61_10485	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JNN61_10495	COG1534	Rna-binding protein
JNN61_10500	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JNN61_10505	COG2027	D-alanyl-D-alanine carboxypeptidase
JNN61_10515	COG0697	spore germination
JNN61_10530	COG0142	geranyltranstransferase activity
JNN61_10535	COG3423	Transcriptional regulator
JNN61_10545	COG5007	Belongs to the BolA IbaG family
JNN61_10550	COG3113	response to antibiotic
JNN61_10555	COG2854	intermembrane phospholipid transfer
JNN61_10560	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JNN61_10565	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JNN61_10570	COG1127	ABC transporter
JNN61_10575	COG0530	calcium, potassium:sodium antiporter activity
JNN61_10580	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JNN61_10580	COG0517	IMP dehydrogenase activity
JNN61_10585	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JNN61_10590	COG3117	lipopolysaccharide transmembrane transporter activity
JNN61_10595	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JNN61_10600	COG1137	ATPase activity
JNN61_10605	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JNN61_10610	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JNN61_10625	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_10630	COG0515	serine threonine protein kinase
JNN61_10640	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JNN61_10645	COG2198	Histidine kinase
JNN61_10645	COG0784	Response regulator, receiver
JNN61_10645	COG5002	protein histidine kinase activity
JNN61_10650	COG1242	4 iron, 4 sulfur cluster binding
JNN61_10655	COG0067	glutamate synthase
JNN61_10655	COG0069	glutamate synthase activity
JNN61_10655	COG0070	glutamate synthase
JNN61_10660	COG0493	'glutamate synthase
JNN61_10665	COG4804	nuclease activity
JNN61_10670	COG2731	YhcH YjgK YiaL family protein
JNN61_10700	COG3069	C4-dicarboxylate transmembrane transporter activity
JNN61_10705	COG2969	positive regulation of protein catabolic process
JNN61_10710	COG0625	glutathione transferase activity
JNN61_10725	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JNN61_10730	COG3105	Protein conserved in bacteria
JNN61_10735	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JNN61_10740	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JNN61_10760	COG2732	(Barnase) inhibitor
JNN61_10780	COG0583	DNA-binding transcription factor activity
JNN61_10785	COG0312	modulator of DNA gyrase
JNN61_10790	COG3164	Protein of unknown function
JNN61_10795	COG1530	ribonuclease E activity
JNN61_10805	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JNN61_10810	COG1792	Involved in formation and maintenance of cell shape
JNN61_10815	COG1077	Cell shape determining protein MreB Mrl
JNN61_10820	COG2200	EAL domain
JNN61_10820	COG2199	diguanylate cyclase activity
JNN61_10825	COG0604	alcohol dehydrogenase
JNN61_10830	COG0511	ligase activity, forming carbon-carbon bonds
JNN61_10835	COG0439	Biotin carboxylase
JNN61_10840	COG3924	membrane
JNN61_10845	COG4145	pantothenate transmembrane transporter activity
JNN61_10855	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JNN61_10865	COG2189	Belongs to the N(4) N(6)-methyltransferase family
JNN61_10875	COG1309	transcriptional regulator
JNN61_10880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_10885	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JNN61_10905	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_10910	COG4597	amino acid ABC transporter
JNN61_10915	COG0765	amino acid transport
JNN61_10920	COG1126	abc transporter atp-binding protein
JNN61_10965	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JNN61_10985	COG0551	DNA topoisomerase type I activity
JNN61_10995	COG0758	DNA mediated transformation
JNN61_11015	COG0569	domain protein
JNN61_11025	COG3036	rescue of stalled ribosome
JNN61_11030	COG0789	Transcriptional regulator
JNN61_11070	COG0201	protein transport
JNN61_11160	COG0089	rRNA binding
JNN61_11230	COG2964	Protein conserved in bacteria
JNN61_11235	COG0545	Peptidyl-prolyl cis-trans isomerase
JNN61_11245	COG1047	Peptidyl-prolyl cis-trans
JNN61_11250	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JNN61_11265	COG0488	(ABC) transporter
JNN61_11270	COG0429	hydrolase of the alpha beta-hydrolase fold
JNN61_11280	COG3954	Phosphoribulokinase
JNN61_11285	COG1765	OsmC-like protein
JNN61_11290	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JNN61_11295	COG1289	transmembrane transporter activity
JNN61_11300	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JNN61_11305	COG0512	Glutamine amidotransferase of anthranilate synthase
JNN61_11310	COG2184	nucleotidyltransferase activity
JNN61_11320	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JNN61_11330	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JNN61_11335	COG2146	nitrite reductase [NAD(P)H] activity
JNN61_11340	COG2116	formate transmembrane transporter activity
JNN61_11355	COG0626	cystathionine gamma-synthase activity
JNN61_11370	COG1735	metal-dependent hydrolase with the TIM-barrel fold
JNN61_11375	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JNN61_11380	COG3457	Alanine racemase
JNN61_11390	COG2188	Transcriptional regulator
JNN61_11395	COG0180	Tryptophanyl-tRNA synthetase
JNN61_11405	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JNN61_11410	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JNN61_11415	COG3266	domain, Protein
JNN61_11430	COG4796	Type ii and iii secretion system protein
JNN61_11445	COG3166	PFAM Fimbrial assembly family protein
JNN61_11450	COG4972	Pilus assembly protein
JNN61_11455	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JNN61_11460	COG0494	nUDIX hydrolase
JNN61_11470	COG1011	Hydrolase
JNN61_11475	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JNN61_11485	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
JNN61_11520	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JNN61_11525	COG2183	response to ionizing radiation
JNN61_11530	COG1918	ferrous iron import across plasma membrane
JNN61_11535	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JNN61_11545	COG5464	transposase or invertase
JNN61_11555	COG1040	competence protein
JNN61_11565	COG2610	gluconate transmembrane transporter activity
JNN61_11570	COG1640	4-alpha-glucanotransferase
JNN61_11575	COG0058	SHG alpha-glucan phosphorylase activity
JNN61_11590	COG1690	Belongs to the RtcB family
JNN61_11595	COG4650	regulator
JNN61_11600	COG1349	DNA-binding transcription factor activity
JNN61_11615	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JNN61_11630	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JNN61_11635	COG0058	SHG alpha-glucan phosphorylase activity
JNN61_11655	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JNN61_11660	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JNN61_11665	COG2095	MarC family integral membrane protein
JNN61_11675	COG0514	ATP-dependent DNA helicase (RecQ)
JNN61_11680	COG2610	gluconate transmembrane transporter activity
JNN61_11685	COG3265	gluconokinase activity
JNN61_11690	COG1609	Transcriptional regulator
JNN61_11695	COG1741	Belongs to the pirin family
JNN61_11700	COG0673	inositol 2-dehydrogenase activity
JNN61_11705	COG1247	-acetyltransferase
JNN61_11710	COG3157	Type VI secretion system effector, Hcp
JNN61_11730	COG0405	Gamma-glutamyltransferase
JNN61_11740	COG0584	glycerophosphoryl diester phosphodiesterase
JNN61_11755	COG1175	transmembrane transport
JNN61_11760	COG1653	transport
JNN61_11770	COG0410	ABC transporter
JNN61_11775	COG0411	ABC transporter
JNN61_11780	COG4177	L-phenylalanine transmembrane transporter activity
JNN61_11785	COG0559	Belongs to the binding-protein-dependent transport system permease family
JNN61_11790	COG0683	leucine binding
JNN61_11795	COG0456	acetyltransferase
JNN61_11800	COG0683	leucine binding
JNN61_11805	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JNN61_11810	COG2177	Part of the ABC transporter FtsEX involved in
JNN61_11815	COG2884	Cell division ATP-binding protein ftsE
JNN61_11820	COG0552	protein localization to endoplasmic reticulum
JNN61_11825	COG0742	ribosomal rna small subunit methyltransferase
JNN61_11830	COG3776	membrane
JNN61_11840	COG3714	YhhN family
JNN61_11855	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JNN61_11870	COG0628	permease
JNN61_11875	COG2091	lysine biosynthetic process via aminoadipic acid
JNN61_11880	COG0747	negative chemotaxis
JNN61_11885	COG0601	transmembrane transport
JNN61_11890	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JNN61_11910	COG3209	COG3209 Rhs family protein
JNN61_11930	COG3209	COG3209 Rhs family protein
JNN61_11940	COG1413	lyase activity
JNN61_11950	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JNN61_11965	COG0842	Transport permease protein
JNN61_11970	COG1129	ABC transporter
JNN61_11970	COG0842	Transport permease protein
JNN61_11975	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_11995	COG2081	HI0933 family
JNN61_12000	COG0306	phosphate transporter
JNN61_12010	COG0589	response to stress
JNN61_12015	COG3104	oligopeptide transport
JNN61_12025	COG0339	signal peptide processing
JNN61_12030	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JNN61_12035	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JNN61_12045	COG0640	Transcriptional regulator
JNN61_12050	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JNN61_12055	COG1393	Belongs to the ArsC family
JNN61_12075	COG3065	identical protein binding
JNN61_12080	COG2197	response regulator
JNN61_12085	COG3720	iron ion transport
JNN61_12090	COG4771	TonB-dependent receptor
JNN61_12095	COG4558	Periplasmic binding protein
JNN61_12105	COG3721	Heme iron utilization protein
JNN61_12115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_12160	COG3247	response to pH
JNN61_12165	COG2771	luxR family
JNN61_12175	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_12180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JNN61_12185	COG2207	Transcriptional regulator
JNN61_12195	COG0076	glutamate decarboxylase activity
JNN61_12200	COG1858	cytochrome C peroxidase
JNN61_12210	COG2197	response regulator
JNN61_12215	COG0583	DNA-binding transcription factor activity
JNN61_12220	COG1295	ribonuclease BN
JNN61_12225	COG0477	Major facilitator Superfamily
JNN61_12230	COG2982	Protein involved in outer membrane biogenesis
JNN61_12235	COG2200	EAL domain
JNN61_12245	COG0612	Peptidase, M16
JNN61_12255	COG2199	diguanylate cyclase activity
JNN61_12255	COG2200	EAL domain
JNN61_12260	COG0457	Tetratricopeptide repeat
JNN61_12260	COG3118	belongs to the thioredoxin family
JNN61_12265	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JNN61_12270	COG1215	transferase activity, transferring glycosyl groups
JNN61_12275	COG1215	transferase activity, transferring glycosyl groups
JNN61_12300	COG2194	sulfuric ester hydrolase activity
JNN61_12320	COG0814	amino acid
JNN61_12325	COG4608	Belongs to the ABC transporter superfamily
JNN61_12330	COG0444	Belongs to the ABC transporter superfamily
JNN61_12335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JNN61_12340	COG0601	transmembrane transport
JNN61_12345	COG0747	negative chemotaxis
JNN61_12360	COG2194	sulfuric ester hydrolase activity
JNN61_12365	COG2223	nitrite transmembrane transporter activity
JNN61_12370	COG5571	outer membrane autotransporter
JNN61_12375	COG2818	Glycosylase
JNN61_12380	COG0456	acetyltransferase
JNN61_12385	COG0243	molybdopterin cofactor binding
JNN61_12390	COG2885	chlorophyll binding
JNN61_12405	COG2944	sequence-specific DNA binding
JNN61_12410	COG1278	Cold shock
JNN61_12440	COG3274	enterobacterial common antigen metabolic process
JNN61_12445	COG4682	membrane
JNN61_12450	COG4682	membrane
JNN61_12455	COG1070	Carbohydrate kinase
JNN61_12465	COG4213	ABC transporter substrate-binding protein
JNN61_12475	COG4214	carbohydrate transport
JNN61_12480	COG1609	Transcriptional regulator
JNN61_12480	COG2207	Transcriptional regulator
JNN61_12485	COG2992	FlgJ-related protein
JNN61_12490	COG0366	Alpha amylase catalytic
JNN61_12495	COG3977	Valine--pyruvate aminotransferase
JNN61_12500	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JNN61_12505	COG1414	Transcriptional regulator
JNN61_12515	COG2731	YhcH YjgK YiaL family protein
JNN61_12520	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JNN61_12525	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JNN61_12530	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JNN61_12535	COG1070	Carbohydrate kinase
JNN61_12540	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JNN61_12545	COG3623	hexulose-6-phosphate isomerase
JNN61_12550	COG0235	Class ii aldolase
JNN61_12560	COG2211	Major facilitator Superfamily
JNN61_12570	COG1598	PFAM Uncharacterised protein family UPF0150
JNN61_12580	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_12585	COG1454	alcohol dehydrogenase
JNN61_12590	COG3276	selenocysteine insertion sequence binding
JNN61_12600	COG0625	glutathione transferase activity
JNN61_12605	COG3209	COG3209 Rhs family protein
JNN61_12620	COG1566	PFAM secretion protein HlyD family protein
JNN61_12630	COG2213	PTS system mannitol-specific
JNN61_12630	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_12640	COG3722	fumarate hydratase activity
JNN61_12660	COG5295	Hep Hag repeat protein
JNN61_12665	COG1620	l-lactate permease
JNN61_12670	COG2186	Transcriptional regulator
JNN61_12680	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JNN61_12685	COG1045	serine acetyltransferase
JNN61_12700	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JNN61_12705	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JNN61_12715	COG4942	peptidase
JNN61_12720	COG2861	carbohydrate metabolic process
JNN61_12725	COG1216	Glycosyl transferase, family 2
JNN61_12735	COG0156	8-amino-7-oxononanoate synthase activity
JNN61_12745	COG0859	PFAM glycosyl transferase family 9
JNN61_12750	COG0859	PFAM glycosyl transferase family 9
JNN61_12765	COG1442	glycosyl transferase family 8
JNN61_12770	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JNN61_12785	COG0515	serine threonine protein kinase
JNN61_12790	COG0438	transferase activity, transferring glycosyl groups
JNN61_12795	COG0859	PFAM glycosyl transferase family 9
JNN61_12800	COG1519	Transferase
JNN61_12810	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JNN61_12830	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JNN61_12855	COG1561	YicC-like family, N-terminal region
JNN61_12930	COG3645	SOS response
JNN61_12935	COG2860	membrane
JNN61_12945	COG0194	GDP metabolic process
JNN61_12955	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JNN61_12960	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JNN61_12965	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JNN61_12970	COG0786	glutamate:sodium symporter activity
JNN61_12975	COG2233	PERMEase
JNN61_12980	COG2982	Protein involved in outer membrane biogenesis
JNN61_12990	COG1940	carbohydrate kinase activity
JNN61_13005	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_13005	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_13010	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_13015	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_13015	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_13015	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_13020	COG3711	transcriptional antiterminator
JNN61_13025	COG1501	Belongs to the glycosyl hydrolase 31 family
JNN61_13030	COG2211	Major facilitator Superfamily
JNN61_13040	COG0582	viral genome integration into host DNA
JNN61_13050	COG2194	sulfuric ester hydrolase activity
JNN61_13075	COG0582	viral genome integration into host DNA
JNN61_13100	COG2003	Belongs to the UPF0758 family
JNN61_13130	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JNN61_13250	COG0583	DNA-binding transcription factor activity
JNN61_13285	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
JNN61_13300	COG2856	Zn peptidase
JNN61_13380	COG3596	GTP binding
JNN61_13385	COG2378	regulation of single-species biofilm formation
JNN61_13410	COG2003	Belongs to the UPF0758 family
JNN61_13450	COG2814	Major facilitator Superfamily
JNN61_13455	COG0697	spore germination
JNN61_13460	COG1464	Belongs to the NlpA lipoprotein family
JNN61_13470	COG0457	Tetratricopeptide repeat
JNN61_13500	COG1388	LysM domain
JNN61_13500	COG4932	domain protein
JNN61_13500	COG2373	Large extracellular alpha-helical protein
JNN61_13525	COG2252	PERMEase
JNN61_13535	COG2271	Major facilitator Superfamily
JNN61_13540	COG2271	Major facilitator Superfamily
JNN61_13545	COG3851	Histidine kinase
JNN61_13550	COG2197	response regulator
JNN61_13565	COG0440	acetolactate synthase activity
JNN61_13570	COG0028	Belongs to the TPP enzyme family
JNN61_13585	COG2814	Major facilitator Superfamily
JNN61_13590	COG0641	radical SAM
JNN61_13600	COG2149	membrane
JNN61_13610	COG3119	arylsulfatase activity
JNN61_13615	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JNN61_13620	COG2207	Transcriptional regulator
JNN61_13635	COG2188	Transcriptional regulator
JNN61_13655	COG5645	(Lipo)protein
JNN61_13660	COG0823	Involved in the tonB-independent uptake of proteins
JNN61_13670	COG2271	Major facilitator Superfamily
JNN61_13680	COG0800	Aldolase
JNN61_13685	COG3734	2-keto-3-deoxy-galactonokinase
JNN61_13690	COG2186	Transcriptional regulator
JNN61_13700	COG0561	phosphatase activity
JNN61_13705	COG3753	Protein conserved in bacteria
JNN61_13710	COG0187	DNA topoisomerase II activity
JNN61_13720	COG0592	DNA-directed DNA polymerase activity
JNN61_13775	COG0814	amino acid
JNN61_13790	COG2091	lysine biosynthetic process via aminoadipic acid
JNN61_13795	COG0431	NADPH-dependent FMN reductase
JNN61_13800	COG2252	PERMEase
JNN61_13805	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JNN61_13825	COG0704	Plays a role in the regulation of phosphate uptake
JNN61_13830	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JNN61_13835	COG0581	inorganic phosphate transmembrane transporter activity
JNN61_13840	COG0573	inorganic phosphate transmembrane transporter activity
JNN61_13845	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JNN61_13970	COG3312	ion transport
JNN61_13985	COG0716	FMN binding
JNN61_13990	COG1522	sequence-specific DNA binding
JNN61_14020	COG1129	ABC transporter
JNN61_14025	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_14030	COG1879	ABC-type sugar transport system periplasmic component
JNN61_14035	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_14040	COG1609	Transcriptional regulator
JNN61_14045	COG0477	Major facilitator Superfamily
JNN61_14050	COG2186	Transcriptional regulator
JNN61_14090	COG3085	chromosome segregation
JNN61_14095	COG0606	chelatase, subunit chli
JNN61_14115	COG3978	acetolactate synthase activity
JNN61_14120	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JNN61_14130	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JNN61_14135	COG0583	DNA-binding transcription factor activity
JNN61_14145	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JNN61_14150	COG3692	DNA binding
JNN61_14155	COG0210	DNA helicase
JNN61_14170	COG3118	belongs to the thioredoxin family
JNN61_14180	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JNN61_14185	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JNN61_14190	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JNN61_14195	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JNN61_14200	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JNN61_14205	COG1088	dTDP-glucose 4,6-dehydratase activity
JNN61_14210	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JNN61_14215	COG0456	acetyltransferase
JNN61_14220	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JNN61_14225	COG2244	polysaccharide biosynthetic process
JNN61_14245	COG1113	amino acid transport
JNN61_14270	COG0641	radical SAM
JNN61_14275	COG3119	arylsulfatase activity
JNN61_14280	COG3071	HemY protein
JNN61_14285	COG2959	enzyme of heme biosynthesis
JNN61_14290	COG1587	Uroporphyrinogen-III synthase
JNN61_14300	COG3072	Adenylate cyclase
JNN61_14315	COG5567	small periplasmic lipoprotein
JNN61_14325	COG3159	Protein conserved in bacteria
JNN61_14335	COG1011	Hydrolase
JNN61_14340	COG0210	DNA helicase
JNN61_14345	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
JNN61_14355	COG0598	Magnesium transport protein CorA
JNN61_14370	COG2962	Rard protein
JNN61_14375	COG2050	protein possibly involved in aromatic compounds catabolism
JNN61_14380	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
JNN61_14385	COG0514	ATP-dependent DNA helicase (RecQ)
JNN61_14390	COG1280	lysine exporter protein (LysE YggA)
JNN61_14395	COG1280	lysine exporter protein (LysE YggA)
JNN61_14400	COG2267	carboxylic ester hydrolase activity
JNN61_14405	COG0561	phosphatase activity
JNN61_14410	COG0697	spore germination
JNN61_14415	COG0583	DNA-binding transcription factor activity
JNN61_14430	COG3157	Type VI secretion system effector, Hcp
JNN61_14435	COG0412	Dienelactone hydrolase
JNN61_14440	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
JNN61_14445	COG1322	Protein conserved in bacteria
JNN61_14455	COG3165	ubiquinone biosynthetic process from chorismate
JNN61_14465	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JNN61_14470	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JNN61_14475	COG0805	protein transport
JNN61_14485	COG0250	Participates in transcription elongation, termination and antitermination
JNN61_14490	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JNN61_14495	COG0543	2 iron, 2 sulfur cluster binding
JNN61_14500	COG0183	Belongs to the thiolase family
JNN61_14515	COG1739	Uncharacterized protein family UPF0029
JNN61_14520	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JNN61_14525	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JNN61_14555	COG1763	Mo-molybdopterin cofactor biosynthetic process
JNN61_14560	COG0746	molybdenum cofactor guanylyltransferase activity
JNN61_14565	COG3084	Protein conserved in bacteria
JNN61_14570	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JNN61_14575	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JNN61_14580	COG5339	Protein conserved in bacteria
JNN61_14585	COG0204	Acyl-transferase
JNN61_14590	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JNN61_14590	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JNN61_14605	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JNN61_14615	COG2204	response regulator
JNN61_14620	COG3852	Histidine kinase
JNN61_14625	COG0174	glutamine synthetase
JNN61_14630	COG1217	gtp-binding protein TYPA
JNN61_14635	COG2188	Transcriptional regulator
JNN61_14640	COG1082	Xylose isomerase domain protein TIM barrel
JNN61_14645	COG2271	Major facilitator Superfamily
JNN61_14650	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JNN61_14655	COG2211	Major facilitator Superfamily
JNN61_14660	COG2211	Major facilitator Superfamily
JNN61_14665	COG1501	Belongs to the glycosyl hydrolase 31 family
JNN61_14675	COG2017	converts alpha-aldose to the beta-anomer
JNN61_14680	COG2942	2-epimerase
JNN61_14685	COG3684	Belongs to the aldolase LacD family
JNN61_14690	COG2084	Dehydrogenase
JNN61_14695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_14700	COG1349	DNA-binding transcription factor activity
JNN61_14705	COG1011	Hydrolase
JNN61_14720	COG0456	acetyltransferase
JNN61_14730	COG0657	acetylesterase activity
JNN61_14735	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
JNN61_14755	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JNN61_14760	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JNN61_14770	COG2864	formate dehydrogenase
JNN61_14775	COG0437	4 iron, 4 sulfur cluster binding
JNN61_14795	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_14795	COG3711	transcriptional antiterminator
JNN61_14800	COG1363	Peptidase, m42
JNN61_14805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_14805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_14810	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_14855	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JNN61_14865	COG2258	MOSC domain
JNN61_14870	COG2205	protein histidine kinase activity
JNN61_14875	COG0745	RESPONSE REGULATOR receiver
JNN61_14880	COG3678	ATP-independent chaperone mediated protein folding
JNN61_14895	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JNN61_14915	COG3152	Membrane
JNN61_14920	COG3691	Protein conserved in bacteria
JNN61_14925	COG0589	response to stress
JNN61_14935	COG1494	fructose-1,6-bisphosphatase
JNN61_14945	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JNN61_14960	COG1575	Belongs to the MenA family. Type 1 subfamily
JNN61_14975	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JNN61_14980	COG1609	Transcriptional regulator
JNN61_14985	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JNN61_14995	COG3209	COG3209 Rhs family protein
JNN61_15000	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JNN61_15030	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
JNN61_15040	COG0626	cystathionine gamma-synthase activity
JNN61_15045	COG0527	aspartate kinase activity
JNN61_15045	COG0460	homoserine dehydrogenase
JNN61_15060	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JNN61_15070	COG0697	spore germination
JNN61_15075	COG3738	Protein conserved in bacteria
JNN61_15080	COG0371	Dehydrogenase
JNN61_15085	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JNN61_15090	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_15090	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_15090	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JNN61_15095	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_15100	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_15105	COG1882	Formate acetyltransferase
JNN61_15110	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JNN61_15115	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JNN61_15120	COG2207	Transcriptional regulator
JNN61_15125	COG2194	sulfuric ester hydrolase activity
JNN61_15140	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JNN61_15155	COG0235	Class ii aldolase
JNN61_15160	COG1349	DNA-binding transcription factor activity
JNN61_15170	COG1129	ABC transporter
JNN61_15175	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_15180	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_15185	COG3623	hexulose-6-phosphate isomerase
JNN61_15190	COG1070	Carbohydrate kinase
JNN61_15195	COG4948	Mandelate Racemase Muconate Lactonizing
JNN61_15200	COG2271	Major facilitator Superfamily
JNN61_15205	COG0583	DNA-binding transcription factor activity
JNN61_15215	COG1309	transcriptional regulator
JNN61_15230	COG4206	TonB-dependent receptor
JNN61_15260	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JNN61_15265	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JNN61_15265	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JNN61_15300	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JNN61_15305	COG0250	Participates in transcription elongation, termination and antitermination
JNN61_15345	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JNN61_15355	COG2104	thiamine diphosphate biosynthetic process
JNN61_15360	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JNN61_15395	COG3068	Protein conserved in bacteria
JNN61_15410	COG3678	ATP-independent chaperone mediated protein folding
JNN61_15415	COG4191	Histidine kinase
JNN61_15420	COG2204	response regulator
JNN61_15425	COG0151	Belongs to the GarS family
JNN61_15455	COG0456	acetyltransferase
JNN61_15465	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JNN61_15470	COG2224	Isocitrate lyase
JNN61_15485	COG1414	Transcriptional regulator
JNN61_15490	COG1410	methionine synthase
JNN61_15490	COG0646	methionine synthase
JNN61_15495	COG1283	sodium-dependent phosphate transmembrane transporter activity
JNN61_15540	COG1187	pseudouridine synthase activity
JNN61_15550	COG0527	aspartate kinase activity
JNN61_15575	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JNN61_15595	COG3833	ABC-type maltose transport systems, permease component
JNN61_15600	COG1175	transmembrane transport
JNN61_15605	COG2182	Extracellular solute-binding protein
JNN61_15610	COG3842	ATPase activity
JNN61_15625	COG1357	PFAM Pentapeptide repeats (8 copies)
JNN61_15645	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JNN61_15655	COG0534	Mate efflux family protein
JNN61_15660	COG3237	CsbD-like
JNN61_15665	COG0735	belongs to the Fur family
JNN61_15675	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JNN61_15685	COG0604	alcohol dehydrogenase
JNN61_15690	COG0305	Participates in initiation and elongation during chromosome replication
JNN61_15695	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JNN61_15700	COG1448	Aminotransferase
JNN61_15710	COG3700	Belongs to the class B bacterial acid phosphatase family
JNN61_15715	COG0432	Pfam Uncharacterised protein family UPF0047
JNN61_15720	COG2315	Protein conserved in bacteria
JNN61_15725	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JNN61_15730	COG0629	single-stranded DNA binding
JNN61_15740	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JNN61_15745	COG2207	Transcriptional regulator
JNN61_15750	COG0789	Transcriptional regulator
JNN61_15755	COG2252	PERMEase
JNN61_15760	COG0025	NhaP-type Na H and K H
JNN61_15765	COG1357	PFAM Pentapeptide repeats (8 copies)
JNN61_15775	COG3162	membrane
JNN61_15780	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JNN61_15790	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JNN61_15795	COG0437	4 iron, 4 sulfur cluster binding
JNN61_15800	COG3301	Polysulphide reductase, NrfD
JNN61_15805	COG1138	Cytochrome C-type biogenesis protein
JNN61_15810	COG3088	subunit of a heme lyase
JNN61_15815	COG4235	cytochrome complex assembly
JNN61_15820	COG1301	dicarboxylic acid transport
JNN61_15825	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JNN61_15840	COG1289	transmembrane transporter activity
JNN61_15845	COG1566	PFAM secretion protein HlyD family protein
JNN61_15855	COG2015	COG2015, Alkyl sulfatase and related hydrolases
JNN61_15860	COG0698	ribose 5-phosphate isomerase
JNN61_15870	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JNN61_15875	COG0456	acetyltransferase
JNN61_15885	COG3454	Phosphonate metabolism
JNN61_15890	COG4778	phosphonate C-P lyase system protein PhnL
JNN61_15895	COG4107	phosphonate C-P lyase system protein PhnK
JNN61_15900	COG3627	carbon phosphorus lyase activity
JNN61_15905	COG3626	phosphonate metabolism
JNN61_15910	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
JNN61_15915	COG3624	Phosphonate C-P lyase system protein PhnG
JNN61_15920	COG2188	Transcriptional regulator
JNN61_15925	COG3639	organic phosphonate transmembrane transporter activity
JNN61_15930	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JNN61_15940	COG2764	glyoxalase bleomycin resistance protein dioxygenase
JNN61_15945	COG2824	Alkylphosphonate utilization operon protein PhnA
JNN61_15950	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JNN61_15960	COG0477	Major facilitator Superfamily
JNN61_15970	COG0642	Histidine kinase
JNN61_15975	COG0745	RESPONSE REGULATOR receiver
JNN61_15980	COG2194	sulfuric ester hydrolase activity
JNN61_15985	COG0531	amino acid
JNN61_15990	COG2207	Transcriptional regulator
JNN61_15995	COG1982	Orn Lys Arg decarboxylase major
JNN61_16000	COG2169	Transcriptional regulator
JNN61_16005	COG1486	melibiose metabolic process
JNN61_16010	COG2211	Major facilitator Superfamily
JNN61_16015	COG3647	Membrane
JNN61_16020	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_16020	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_16025	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JNN61_16030	COG4565	transcriptional regulatory protein
JNN61_16035	COG3290	protein histidine kinase activity
JNN61_16040	COG3592	Divergent 4Fe-4S mono-cluster
JNN61_16045	COG2388	GCN5-related N-acetyl-transferase
JNN61_16060	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JNN61_16065	COG3104	oligopeptide transport
JNN61_16070	COG1982	Orn Lys Arg decarboxylase major
JNN61_16075	COG0531	amino acid
JNN61_16080	COG3710	Transcriptional regulator
JNN61_16115	COG2003	Belongs to the UPF0758 family
JNN61_16140	COG2378	regulation of single-species biofilm formation
JNN61_16145	COG3596	GTP binding
JNN61_16165	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JNN61_16170	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_16175	COG2313	pseudouridylate synthase activity
JNN61_16180	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JNN61_16185	COG1522	sequence-specific DNA binding
JNN61_16185	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_16235	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JNN61_16240	COG2207	Transcriptional regulator
JNN61_16245	COG2972	Histidine kinase
JNN61_16265	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JNN61_16270	COG1882	Formate acetyltransferase
JNN61_16275	COG0693	protein deglycase activity
JNN61_16285	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_16320	COG4820	ethanolamine utilization protein (EutJ)
JNN61_16325	COG4869	propanediol catabolic process
JNN61_16375	COG3969	phosphoadenosine phosphosulfate
JNN61_16380	COG1475	DNA binding
JNN61_16400	COG1201	RNA secondary structure unwinding
JNN61_16420	COG2194	sulfuric ester hydrolase activity
JNN61_16425	COG0582	viral genome integration into host DNA
JNN61_16435	COG1309	transcriptional regulator
JNN61_16440	COG4232	protein-disulfide reductase activity
JNN61_16450	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JNN61_16455	COG1027	Aspartate ammonia-lyase
JNN61_16460	COG3030	protein affecting phage T7 exclusion by the F plasmid
JNN61_16465	COG0531	amino acid
JNN61_16490	COG1509	lysine 2,3-aminomutase activity
JNN61_16500	COG5510	response to toxic substance
JNN61_16505	COG5510	response to toxic substance
JNN61_16510	COG2076	Multidrug Resistance protein
JNN61_16515	COG3040	lipid binding
JNN61_16520	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JNN61_16535	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JNN61_16540	COG1053	succinate dehydrogenase
JNN61_16550	COG0531	amino acid
JNN61_16560	COG1511	domain protein
JNN61_16560	COG3264	Mechanosensitive ion channel
JNN61_16605	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JNN61_16605	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JNN61_16610	COG0802	atpase or kinase
JNN61_16615	COG0860	N-Acetylmuramoyl-L-alanine amidase
JNN61_16635	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JNN61_16640	COG0330	HflC and HflK could
JNN61_16645	COG0330	HflC and HflK could
JNN61_16650	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JNN61_16665	COG0557	exoribonuclease II activity
JNN61_16670	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JNN61_16675	COG3789	protein conserved in bacteria
JNN61_16680	COG1842	Phage shock protein A
JNN61_16690	COG3766	membrane
JNN61_16695	COG5463	Belongs to the UPF0441 family
JNN61_16700	COG0754	glutathionylspermidine amidase activity
JNN61_16705	COG1960	acyl-CoA dehydrogenase activity
JNN61_16715	COG3650	response to hydrogen peroxide
JNN61_16720	COG1073	alpha beta
JNN61_16735	COG3037	sugar-specific permease SgaT UlaA
JNN61_16780	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JNN61_16805	COG0675	Transposase, IS605 OrfB family
JNN61_16815	COG3061	Opacity-associated protein A
JNN61_16820	COG0545	Peptidyl-prolyl cis-trans isomerase
JNN61_16825	COG1113	amino acid transport
JNN61_16835	COG0697	spore germination
JNN61_16840	COG0702	epimerase
JNN61_16845	COG1733	regulation of RNA biosynthetic process
JNN61_16850	COG0737	Belongs to the 5'-nucleotidase family
JNN61_16855	COG1218	3'(2'),5'-bisphosphate nucleotidase
JNN61_16865	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JNN61_16875	COG1253	flavin adenine dinucleotide binding
JNN61_16885	COG0729	surface antigen
JNN61_16890	COG2911	Protein conserved in bacteria
JNN61_16895	COG2105	PFAM AIG2 family protein
JNN61_16900	COG2336	PFAM SpoVT AbrB
JNN61_16905	COG2337	Toxic component of a toxin-antitoxin (TA) module
JNN61_16910	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JNN61_16915	COG1879	ABC-type sugar transport system periplasmic component
JNN61_16920	COG1129	ABC transporter
JNN61_16925	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_16930	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_16940	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JNN61_16950	COG0312	modulator of DNA gyrase
JNN61_16955	COG3783	Cytochrome b(562)
JNN61_16960	COG3077	Addiction module antitoxin, RelB DinJ family
JNN61_16965	COG2026	Addiction module toxin, RelE StbE family
JNN61_16970	COG0602	queuosine metabolic process
JNN61_16975	COG1328	CTP reductase activity
JNN61_16980	COG0366	Alpha amylase catalytic
JNN61_16985	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_16985	COG1263	PTS System
JNN61_16990	COG1609	Transcriptional regulator
JNN61_17000	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JNN61_17005	COG0251	oxidation-reduction process
JNN61_17025	COG0251	oxidation-reduction process
JNN61_17030	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_17035	COG1309	transcriptional regulator
JNN61_17040	COG2731	YhcH YjgK YiaL family protein
JNN61_17055	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
JNN61_17060	COG0456	acetyltransferase
JNN61_17065	COG4269	membrane
JNN61_17070	COG0525	valine-tRNA ligase activity
JNN61_17075	COG2927	DNA polymerase III (CHI subunit)
JNN61_17085	COG0795	lipopolysaccharide-transporting ATPase activity
JNN61_17090	COG0795	lipopolysaccharide-transporting ATPase activity
JNN61_17095	COG0433	COG0433 Predicted ATPase
JNN61_17100	COG1609	Transcriptional regulator
JNN61_17105	COG2610	gluconate transmembrane transporter activity
JNN61_17110	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_17115	COG1063	alcohol dehydrogenase
JNN61_17120	COG3265	gluconokinase activity
JNN61_17125	COG1064	alcohol dehydrogenase
JNN61_17135	COG0582	viral genome integration into host DNA
JNN61_17145	COG4372	Transposase
JNN61_17150	COG3436	PFAM IS66 Orf2 family protein
JNN61_17205	COG2207	Transcriptional regulator
JNN61_17205	COG3708	Transcriptional regulator
JNN61_17260	COG2211	Major facilitator Superfamily
JNN61_17265	COG1917	Cupin 2, conserved barrel domain protein
JNN61_17270	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_17275	COG0823	Involved in the tonB-independent uptake of proteins
JNN61_17370	COG0583	DNA-binding transcription factor activity
JNN61_17380	COG3468	outer membrane autotransporter barrel domain protein
JNN61_17400	COG2003	Belongs to the UPF0758 family
JNN61_17425	COG2390	Transcriptional regulator
JNN61_17430	COG2610	gluconate transmembrane transporter activity
JNN61_17435	COG0129	dihydroxy-acid dehydratase activity
JNN61_17440	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JNN61_17445	COG1414	Transcriptional regulator
JNN61_17450	COG1349	DNA-binding transcription factor activity
JNN61_17455	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JNN61_17460	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_17465	COG0434	BtpA family
JNN61_17470	COG3775	system Galactitol-specific IIC component
JNN61_17475	COG3414	Phosphotransferase system galactitol-specific IIB component
JNN61_17480	COG1363	Peptidase, m42
JNN61_17495	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JNN61_17500	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JNN61_17505	COG3153	acetyltransferase
JNN61_17530	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
JNN61_17535	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JNN61_17540	COG0582	viral genome integration into host DNA
JNN61_17545	COG4974	Belongs to the 'phage' integrase family
JNN61_17550	COG3539	Fimbrial protein
JNN61_17555	COG3539	Fimbrial protein
JNN61_17560	COG3121	Chaperone
JNN61_17565	COG3188	usher protein
JNN61_17570	COG3539	Fimbrial protein
JNN61_17575	COG3539	Fimbrial protein
JNN61_17580	COG3539	Fimbrial protein
JNN61_17585	COG2610	gluconate transmembrane transporter activity
JNN61_17595	COG0246	Mannitol dehydrogenase
JNN61_17600	COG2186	Transcriptional regulator
JNN61_17615	COG0583	DNA-binding transcription factor activity
JNN61_17620	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JNN61_17625	COG0700	Nucleoside recognition
JNN61_17630	COG3366	ferrous iron transmembrane transporter activity
JNN61_17640	COG0477	Major facilitator Superfamily
JNN61_17655	COG1924	4 iron, 4 sulfur cluster binding
JNN61_17660	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
JNN61_17780	COG2733	membrane
JNN61_17790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JNN61_17805	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
JNN61_17810	COG0732	type I restriction modification DNA specificity domain
JNN61_17815	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JNN61_17820	COG1715	Restriction endonuclease
JNN61_17835	COG0523	cobalamin synthesis protein
JNN61_17840	COG2879	small protein
JNN61_17845	COG1966	Carbon starvation protein
JNN61_17850	COG0840	transmembrane signaling receptor activity
JNN61_17855	COG2271	Major facilitator Superfamily
JNN61_17860	COG1802	Transcriptional regulator
JNN61_17865	COG1063	alcohol dehydrogenase
JNN61_17880	COG1484	DNA-dependent DNA replication
JNN61_17895	COG2966	Psort location CytoplasmicMembrane, score
JNN61_17900	COG2197	response regulator
JNN61_17905	COG2197	response regulator
JNN61_17910	COG4114	ferric iron reductase
JNN61_17940	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
JNN61_17945	COG0456	acetyltransferase
JNN61_17950	COG1011	Hydrolase
JNN61_17960	COG2823	Periplasmic or secreted lipoprotein
JNN61_17970	COG4667	esterase of the alpha-beta hydrolase superfamily
JNN61_17975	COG0084	hydrolase, TatD family'
JNN61_17980	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JNN61_17985	COG1328	CTP reductase activity
JNN61_18020	COG3726	membrane protein affecting hemolysin expression
JNN61_18025	COG0560	Phosphoserine phosphatase
JNN61_18030	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JNN61_18035	COG3172	ATPase kinase involved in NAD metabolism
JNN61_18035	COG1056	cytidyltransferase-related domain
JNN61_18040	COG1902	pentaerythritol trinitrate reductase activity
JNN61_18055	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_18065	COG0583	DNA-binding transcription factor activity
JNN61_18070	COG0488	(ABC) transporter
JNN61_18075	COG0741	lytic transglycosylase activity
JNN61_18095	COG2207	Transcriptional regulator
JNN61_18095	COG3708	Transcriptional regulator
JNN61_18100	COG3045	CreA protein
JNN61_18105	COG0745	RESPONSE REGULATOR receiver
JNN61_18110	COG2205	protein histidine kinase activity
JNN61_18115	COG4452	Inner membrane protein CreD
JNN61_18120	COG0745	RESPONSE REGULATOR receiver
JNN61_18130	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
JNN61_18140	COG0527	aspartate kinase activity
JNN61_18140	COG0460	homoserine dehydrogenase
JNN61_18150	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JNN61_18165	COG1115	amino acid carrier protein
JNN61_18175	COG0521	Mo-molybdopterin cofactor biosynthetic process
JNN61_18180	COG1584	GPR1 FUN34 yaaH family protein
JNN61_18185	COG4735	regulation of single-species biofilm formation
JNN61_18215	COG0583	DNA-binding transcription factor activity
JNN61_18225	COG3188	usher protein
JNN61_18230	COG3121	Chaperone
JNN61_18255	COG0196	riboflavin kinase activity
JNN61_18270	COG1047	Peptidyl-prolyl cis-trans
JNN61_18290	COG0505	Belongs to the CarA family
JNN61_18295	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JNN61_18345	COG0644	oxidoreductase
JNN61_18350	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JNN61_18355	COG2271	Major facilitator Superfamily
JNN61_18370	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JNN61_18405	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JNN61_18410	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JNN61_18415	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JNN61_18420	COG1357	PFAM Pentapeptide repeats (8 copies)
JNN61_18430	COG0564	pseudouridine synthase activity
JNN61_18440	COG0417	DNA replication proofreading
JNN61_18445	COG0235	Class ii aldolase
JNN61_18460	COG4977	sequence-specific DNA binding
JNN61_18465	COG0586	Pfam SNARE associated Golgi protein
JNN61_18475	COG1178	ABC-type Fe3 transport system permease component
JNN61_18480	COG4143	(ABC) transporter
JNN61_18490	COG4533	DNA binding
JNN61_18525	COG0583	DNA-binding transcription factor activity
JNN61_18535	COG0028	Belongs to the TPP enzyme family
JNN61_18540	COG0440	acetolactate synthase activity
JNN61_18550	COG1609	Transcriptional regulator
JNN61_18565	COG3116	cell division
JNN61_18570	COG0768	penicillin binding
JNN61_18575	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JNN61_18580	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JNN61_18595	COG0772	Belongs to the SEDS family
JNN61_18610	COG1181	Belongs to the D-alanine--D-alanine ligase family
JNN61_18615	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JNN61_18620	COG0849	cell division
JNN61_18625	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JNN61_18645	COG0494	nUDIX hydrolase
JNN61_18660	COG0237	dephospho-CoA kinase activity
JNN61_18675	COG1459	type II secretion system
JNN61_18680	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JNN61_18690	COG4969	Belongs to the N-Me-Phe pilin family
JNN61_18695	COG0157	Belongs to the NadC ModD family
JNN61_18700	COG3023	N-Acetylmuramoyl-L-alanine amidase
JNN61_18705	COG3725	Membrane protein required for beta-lactamase induction
JNN61_18710	COG1113	amino acid transport
JNN61_18715	COG2186	Transcriptional regulator
JNN61_18720	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JNN61_18725	COG0508	dehydrogenase complex catalyzes the overall conversion of
JNN61_18730	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JNN61_18735	COG3064	Membrane
JNN61_18740	COG1049	propionate catabolic process, 2-methylcitrate cycle
JNN61_18765	COG2132	Multicopper oxidase
JNN61_18770	COG4993	Dehydrogenase
JNN61_18775	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JNN61_18780	COG0288	reversible hydration of carbon dioxide
JNN61_18785	COG1131	(ABC) transporter
JNN61_18790	COG0842	Transport permease protein
JNN61_18795	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_18800	COG0726	polysaccharide deacetylase
JNN61_18810	COG5464	transposase or invertase
JNN61_18825	COG3539	Fimbrial protein
JNN61_18830	COG3539	Fimbrial protein
JNN61_18835	COG3539	Fimbrial protein
JNN61_18840	COG3188	usher protein
JNN61_18845	COG3121	Chaperone
JNN61_18850	COG3539	Fimbrial protein
JNN61_18855	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JNN61_18860	COG0617	tRNA 3'-terminal CCA addition
JNN61_18865	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JNN61_18870	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JNN61_18880	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JNN61_18885	COG1643	Atp-dependent helicase
JNN61_18890	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JNN61_18895	COG4774	siderophore transport
JNN61_18900	COG1120	ATPase activity
JNN61_18905	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JNN61_18910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_18935	COG2860	membrane
JNN61_18940	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JNN61_18955	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JNN61_18960	COG3835	regulator
JNN61_18980	COG0024	Methionine aminopeptidase
JNN61_19005	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JNN61_19010	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JNN61_19015	COG0575	Belongs to the CDS family
JNN61_19020	COG0750	zinc metalloprotease
JNN61_19030	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
JNN61_19035	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JNN61_19055	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JNN61_19060	COG0587	DNA-directed DNA polymerase activity
JNN61_19070	COG1982	Orn Lys Arg decarboxylase major
JNN61_19075	COG0346	lactoylglutathione lyase activity
JNN61_19080	COG0037	tRNA processing
JNN61_19085	COG4568	rho-dependent transcription termination
JNN61_19095	COG4681	YaeQ
JNN61_19100	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JNN61_19105	COG3015	lipoprotein NlpE involved in copper resistance
JNN61_19110	COG0791	NLP P60 protein
JNN61_19120	COG1720	tRNA m6t6A37 methyltransferase activity
JNN61_19130	COG1464	Belongs to the NlpA lipoprotein family
JNN61_19135	COG2011	ABC-type metal ion transport system permease component
JNN61_19140	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JNN61_19145	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JNN61_19180	COG0656	L-ascorbic acid biosynthetic process
JNN61_19185	COG0583	DNA-binding transcription factor activity
JNN61_19195	COG2226	methyltransferase
JNN61_19200	COG0741	lytic transglycosylase activity
JNN61_19200	COG1388	LysM domain
JNN61_19210	COG2226	methyltransferase
JNN61_19220	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JNN61_19240	COG4104	PAAR repeat-containing protein
JNN61_19245	COG3157	Type VI secretion system effector, Hcp
JNN61_19345	COG5433	transposase activity
JNN61_19355	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JNN61_19365	COG1960	acyl-CoA dehydrogenase activity
JNN61_19375	COG0121	glutamine amidotransferase
JNN61_19380	COG3034	peptidoglycan biosynthetic process
JNN61_19385	COG0791	NLP P60 protein
JNN61_19415	COG2161	toxin-antitoxin pair type II binding
JNN61_19425	COG0454	-acetyltransferase
JNN61_19440	COG2195	Cleaves the N-terminal amino acid of tripeptides
JNN61_19460	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JNN61_19515	COG0583	DNA-binding transcription factor activity
JNN61_19530	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JNN61_19535	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JNN61_19540	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JNN61_19545	COG2080	2 iron, 2 sulfur cluster binding
JNN61_19550	COG3477	response to acidic pH
JNN61_19555	COG0727	PFAM Uncharacterised protein family (UPF0153)
JNN61_19560	COG3121	Chaperone
JNN61_19610	COG1902	pentaerythritol trinitrate reductase activity
JNN61_19615	COG1073	alpha beta
JNN61_19620	COG0583	DNA-binding transcription factor activity
JNN61_19630	COG0667	Aldo Keto reductase
JNN61_19635	COG0656	L-ascorbic acid biosynthetic process
JNN61_19640	COG1388	LysM domain
JNN61_19645	COG3708	Transcriptional regulator
JNN61_19645	COG2207	Transcriptional regulator
JNN61_19650	COG0656	L-ascorbic acid biosynthetic process
JNN61_19655	COG3059	membrane
JNN61_19665	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JNN61_19670	COG2207	Transcriptional regulator
JNN61_19675	COG0247	lactate metabolic process
JNN61_19680	COG1139	Iron-sulfur cluster binding protein
JNN61_19685	COG1556	Lactate utilization protein
JNN61_19710	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JNN61_19715	COG2771	luxR family
JNN61_19715	COG2200	EAL domain
JNN61_19720	COG0583	DNA-binding transcription factor activity
JNN61_19730	COG0666	response to abiotic stimulus
JNN61_19740	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JNN61_19745	COG1304	FMN binding
JNN61_19750	COG0549	Belongs to the carbamate kinase family
JNN61_19755	COG0402	S-adenosylhomocysteine deaminase activity
JNN61_19765	COG1879	ABC-type sugar transport system periplasmic component
JNN61_19770	COG1129	ABC transporter
JNN61_19775	COG1172	Belongs to the binding-protein-dependent transport system permease family
JNN61_19785	COG1064	alcohol dehydrogenase
JNN61_19800	COG1280	lysine exporter protein (LysE YggA)
JNN61_19810	COG3829	transcription factor binding
JNN61_19815	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JNN61_19820	COG0372	Belongs to the citrate synthase family
JNN61_19825	COG2079	MmgE PrpD family protein
JNN61_19830	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JNN61_19835	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JNN61_19840	COG0402	S-adenosylhomocysteine deaminase activity
JNN61_19845	COG0583	DNA-binding transcription factor activity
JNN61_19850	COG0288	reversible hydration of carbon dioxide
JNN61_19860	COG2807	transmembrane transport
JNN61_19865	COG0110	maltose O-acetyltransferase activity
JNN61_19870	COG2223	nitrite transmembrane transporter activity
JNN61_19880	COG1609	Transcriptional regulator
JNN61_19885	COG1414	Transcriptional regulator
JNN61_19920	COG2814	Major facilitator Superfamily
JNN61_19925	COG3122	Protein conserved in bacteria
JNN61_19955	COG1215	transferase activity, transferring glycosyl groups
JNN61_19960	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JNN61_19965	COG4521	taurine ABC transporter
JNN61_19970	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JNN61_19975	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JNN61_19980	COG2175	clavaminate synthase activity
JNN61_19985	COG0113	porphobilinogen synthase activity
JNN61_19990	COG3468	outer membrane autotransporter barrel domain protein
JNN61_19995	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JNN61_20000	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JNN61_20005	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
JNN61_20025	COG1181	Belongs to the D-alanine--D-alanine ligase family
JNN61_20040	COG1785	Belongs to the alkaline phosphatase family
JNN61_20050	COG3706	GGDEF domain
JNN61_20055	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JNN61_20075	COG4126	flavin adenine dinucleotide binding
JNN61_20100	COG1940	carbohydrate kinase activity
JNN61_20105	COG2814	Major facilitator Superfamily
JNN61_20110	COG0419	ATPase involved in DNA repair
JNN61_20115	COG0420	3'-5' exonuclease activity
JNN61_20120	COG0745	RESPONSE REGULATOR receiver
JNN61_20125	COG5002	protein histidine kinase activity
JNN61_20130	COG1114	Component of the transport system for branched-chain amino acids
JNN61_20140	COG1113	amino acid transport
JNN61_20145	COG0366	Alpha amylase catalytic
JNN61_20170	COG1862	Preprotein translocase
JNN61_20175	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JNN61_20180	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JNN61_20185	COG1403	HNH endonuclease
JNN61_20190	COG3248	Nucleoside-binding outer membrane protein
JNN61_20205	COG0675	Transposase, IS605 OrfB family
JNN61_20220	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JNN61_20220	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JNN61_20235	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JNN61_20240	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JNN61_20250	COG0667	Aldo Keto reductase
JNN61_20260	COG0142	geranyltranstransferase activity
JNN61_20275	COG0693	protein deglycase activity
JNN61_20280	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JNN61_20290	COG2814	Major facilitator Superfamily
JNN61_20300	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JNN61_20305	COG1845	cytochrome c oxidase, subunit III
JNN61_20310	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JNN61_20315	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JNN61_20320	COG2223	nitrite transmembrane transporter activity
JNN61_20325	COG3056	Lipoprotein
JNN61_20330	COG0271	Belongs to the BolA IbaG family
JNN61_20350	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JNN61_20355	COG0776	regulation of translation
JNN61_20360	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JNN61_20365	COG1555	photosystem II stabilization
JNN61_20370	COG0824	Thioesterase
JNN61_20380	COG4533	DNA binding
JNN61_20395	COG1522	sequence-specific DNA binding
JNN61_20400	COG1132	(ABC) transporter
JNN61_20405	COG1132	(ABC) transporter
JNN61_20410	COG0347	Belongs to the P(II) protein family
JNN61_20415	COG0004	ammonium transporteR
JNN61_20420	COG1946	Acyl-CoA thioesterase
JNN61_20425	COG3126	Type III secretion system lipoprotein chaperone (YscW)
JNN61_20430	COG3695	enzyme binding
JNN61_20440	COG5507	3-demethylubiquinone-9 3-methyltransferase
JNN61_20445	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JNN61_20455	COG0110	maltose O-acetyltransferase activity
JNN61_20470	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JNN61_20475	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_20480	COG1309	transcriptional regulator
JNN61_20485	COG1196	nuclear chromosome segregation
JNN61_20485	COG3264	Mechanosensitive ion channel
JNN61_20495	COG3923	Primosomal replication protein n
JNN61_20500	COG2832	Protein of unknown function (DUF454)
JNN61_20510	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JNN61_20545	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JNN61_20550	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JNN61_20550	COG4651	solute:proton antiporter activity
JNN61_20555	COG2223	nitrite transmembrane transporter activity
JNN61_20560	COG0737	Belongs to the 5'-nucleotidase family
JNN61_20565	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JNN61_20570	COG3735	TraB family
JNN61_20575	COG2217	Heavy metal translocating P-type atpase
JNN61_20585	COG0531	amino acid
JNN61_20610	COG0789	Transcriptional regulator
JNN61_20630	COG1585	Membrane protein implicated in regulation of membrane protease activity
JNN61_20635	COG0330	HflC and HflK could
JNN61_20640	COG4619	ABC transporter
JNN61_20645	COG0390	transport system, permease component
JNN61_20650	COG3118	belongs to the thioredoxin family
JNN61_20655	COG0300	oxidoreductase activity
JNN61_20660	COG2755	lipolytic protein G-D-S-L family
JNN61_20665	COG4181	ATPase activity
JNN61_20670	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JNN61_20680	COG0583	DNA-binding transcription factor activity
JNN61_20690	COG1414	Transcriptional regulator
JNN61_20695	COG3960	tartronate-semialdehyde synthase activity
JNN61_20700	COG3622	Belongs to the hyi family
JNN61_20705	COG2084	Dehydrogenase
JNN61_20710	COG1953	Uracil, thiamine, allantoin
JNN61_20720	COG2233	PERMEase
JNN61_20725	COG1929	Belongs to the glycerate kinase type-1 family
JNN61_20730	COG3257	ureidoglycine aminohydrolase activity
JNN61_20735	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JNN61_20740	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JNN61_20745	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JNN61_20750	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JNN61_20760	COG0549	Belongs to the carbamate kinase family
JNN61_20765	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JNN61_20770	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JNN61_20780	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JNN61_20790	COG1988	membrane-bound metal-dependent
JNN61_20795	COG2501	S4 domain
JNN61_20805	COG3539	Fimbrial protein
JNN61_20810	COG3121	Chaperone
JNN61_20815	COG3188	usher protein
JNN61_20820	COG3539	Fimbrial protein
JNN61_20825	COG3539	Fimbrial protein
JNN61_20830	COG2197	response regulator
JNN61_20840	COG2207	Transcriptional regulator
JNN61_20855	COG1215	transferase activity, transferring glycosyl groups
JNN61_20860	COG5433	transposase activity
JNN61_20885	COG4104	PAAR repeat-containing protein
JNN61_20885	COG3209	COG3209 Rhs family protein
JNN61_20900	COG5002	protein histidine kinase activity
JNN61_20905	COG0745	RESPONSE REGULATOR receiver
JNN61_20910	COG1538	Outer membrane efflux protein
JNN61_20915	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_20920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_20925	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JNN61_20930	COG1113	amino acid transport
JNN61_20935	COG0668	transmembrane transport
JNN61_20940	COG0778	Nitroreductase
JNN61_20945	COG2315	Protein conserved in bacteria
JNN61_20965	COG2977	Belongs to the P-Pant transferase superfamily
JNN61_20970	COG4771	TonB-dependent receptor
JNN61_20975	COG2382	esterase
JNN61_20980	COG3251	PFAM MbtH domain protein
JNN61_20985	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JNN61_20985	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JNN61_20990	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JNN61_20995	COG1120	ATPase activity
JNN61_21000	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_21005	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_21015	COG4592	Periplasmic binding protein
JNN61_21020	COG1169	isochorismate synthase
JNN61_21025	COG1021	2,3-dihydroxybenzoate-AMP ligase
JNN61_21030	COG3433	isochorismatase activity
JNN61_21030	COG1535	isochorismatase
JNN61_21035	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_21040	COG2050	protein possibly involved in aromatic compounds catabolism
JNN61_21045	COG1966	Carbon starvation protein
JNN61_21050	COG2879	small protein
JNN61_21055	COG0371	Dehydrogenase
JNN61_21060	COG0436	Aminotransferase
JNN61_21065	COG1475	DNA binding
JNN61_21070	COG3969	phosphoadenosine phosphosulfate
JNN61_21075	COG0583	DNA-binding transcription factor activity
JNN61_21080	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JNN61_21085	COG0450	alkyl hydroperoxide reductase
JNN61_21090	COG3634	alkyl hydroperoxide reductase activity
JNN61_21095	COG0589	response to stress
JNN61_21100	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JNN61_21105	COG3719	Belongs to the RNase T2 family
JNN61_21110	COG0471	metal ion transport
JNN61_21125	COG3051	citrate lyase alpha subunit
JNN61_21130	COG2301	Belongs to the HpcH HpaI aldolase family
JNN61_21140	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
JNN61_21145	COG3290	protein histidine kinase activity
JNN61_21150	COG4565	transcriptional regulatory protein
JNN61_21155	COG3069	C4-dicarboxylate transmembrane transporter activity
JNN61_21175	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JNN61_21180	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JNN61_21190	COG0583	DNA-binding transcription factor activity
JNN61_21205	COG1686	Belongs to the peptidase S11 family
JNN61_21210	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JNN61_21215	COG0772	Belongs to the SEDS family
JNN61_21220	COG0768	penicillin binding
JNN61_21230	COG0799	negative regulation of ribosome biogenesis
JNN61_21235	COG0406	alpha-ribazole phosphatase activity
JNN61_21245	COG1466	dna polymerase III delta subunit
JNN61_21260	COG2888	peptidyl-tyrosine sulfation
JNN61_21270	COG1126	abc transporter atp-binding protein
JNN61_21275	COG0765	amino acid transport
JNN61_21280	COG0765	amino acid transport
JNN61_21285	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_21290	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JNN61_21295	COG4535	Mg2 and Co2 transporter CorC
JNN61_21305	COG1702	phosphate starvation-inducible protein PhoH
JNN61_21315	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JNN61_21355	COG0367	asparagine synthase
JNN61_21360	COG0647	UMP catabolic process
JNN61_21365	COG1846	Transcriptional regulator
JNN61_21365	COG1940	carbohydrate kinase activity
JNN61_21370	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JNN61_21380	COG2190	(PTS) system
JNN61_21380	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_21380	COG1263	PTS System
JNN61_21400	COG0735	belongs to the Fur family
JNN61_21410	COG0716	FMN binding
JNN61_21420	COG0596	Alpha beta hydrolase
JNN61_21425	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JNN61_21430	COG0033	Phosphoglucomutase
JNN61_21435	COG0531	amino acid
JNN61_21440	COG1982	Orn Lys Arg decarboxylase major
JNN61_21450	COG0745	RESPONSE REGULATOR receiver
JNN61_21455	COG2205	protein histidine kinase activity
JNN61_21485	COG3209	COG3209 Rhs family protein
JNN61_21495	COG3209	COG3209 Rhs family protein
JNN61_21505	COG3272	Protein of unknown function (DUF1722)
JNN61_21510	COG0415	Belongs to the DNA photolyase family
JNN61_21520	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JNN61_21525	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JNN61_21530	COG1984	allophanate hydrolase subunit 2
JNN61_21545	COG3180	Ammonia monooxygenase
JNN61_21550	COG3539	Fimbrial protein
JNN61_21555	COG3121	Chaperone
JNN61_21560	COG3188	usher protein
JNN61_21565	COG3539	Fimbrial protein
JNN61_21570	COG0372	Belongs to the citrate synthase family
JNN61_21580	COG2009	succinate dehydrogenase
JNN61_21585	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JNN61_21590	COG1053	succinate dehydrogenase
JNN61_21595	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JNN61_21600	COG0567	Dehydrogenase, E1 component
JNN61_21605	COG0508	dehydrogenase complex catalyzes the overall conversion of
JNN61_21615	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JNN61_21620	COG0583	DNA-binding transcription factor activity
JNN61_21625	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JNN61_21630	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_21630	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JNN61_21635	COG1301	dicarboxylic acid transport
JNN61_21650	COG3799	methylaspartate ammonia-lyase activity
JNN61_21655	COG4865	methylaspartate mutase activity
JNN61_21665	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JNN61_21680	COG1271	oxidase subunit
JNN61_21685	COG1294	oxidase, subunit
JNN61_21690	COG4890	Cyd operon protein YbgT
JNN61_21695	COG3790	cyd operon protein YbgE
JNN61_21700	COG0824	Thioesterase
JNN61_21705	COG0811	peptide transport
JNN61_21710	COG0848	biopolymer transport protein
JNN61_21715	COG3064	Membrane
JNN61_21725	COG2885	chlorophyll binding
JNN61_21730	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JNN61_21775	COG3201	nicotinamide mononucleotide transporter
JNN61_21780	COG1230	cation diffusion facilitator family transporter
JNN61_21790	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JNN61_21800	COG2017	converts alpha-aldose to the beta-anomer
JNN61_21810	COG1085	galactose-1-phosphate uridylyltransferase
JNN61_21815	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JNN61_21820	COG1119	ATPase activity
JNN61_21825	COG3585	molybdate ion transport
JNN61_21825	COG2005	Transcriptional regulator
JNN61_21835	COG0725	ABC transporter, periplasmic molybdate-binding protein
JNN61_21840	COG4149	molybdate abc transporter
JNN61_21845	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JNN61_21850	COG0561	phosphatase activity
JNN61_21860	COG0583	DNA-binding transcription factor activity
JNN61_21865	COG2828	Protein conserved in bacteria
JNN61_21870	COG0471	metal ion transport
JNN61_21875	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JNN61_21880	COG4677	pectinesterase activity
JNN61_21885	COG1881	PFAM PEBP family protein
JNN61_21890	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JNN61_21905	COG2226	methyltransferase
JNN61_21910	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JNN61_21920	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JNN61_21930	COG0521	Mo-molybdopterin cofactor biosynthetic process
JNN61_21940	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JNN61_21945	COG0314	molybdopterin synthase activity
JNN61_21950	COG0670	Belongs to the BI1 family
JNN61_21955	COG0670	Belongs to the BI1 family
JNN61_21960	COG0392	lysyltransferase activity
JNN61_21965	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JNN61_21970	COG3568	Endonuclease Exonuclease Phosphatase
JNN61_21980	COG0842	Transport permease protein
JNN61_21985	COG0842	Transport permease protein
JNN61_21990	COG1131	(ABC) transporter
JNN61_22000	COG1309	transcriptional regulator
JNN61_22005	COG0513	Belongs to the DEAD box helicase family
JNN61_22020	COG1199	ATP-dependent helicase activity
JNN61_22025	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JNN61_22030	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JNN61_22040	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JNN61_22050	COG4774	siderophore transport
JNN61_22065	COG0668	transmembrane transport
JNN61_22070	COG1126	abc transporter atp-binding protein
JNN61_22075	COG0765	amino acid transport
JNN61_22080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_22090	COG5006	permease, DMT superfamily
JNN61_22100	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JNN61_22105	COG2194	sulfuric ester hydrolase activity
JNN61_22115	COG1321	iron dependent repressor
JNN61_22120	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JNN61_22125	COG1376	ErfK ybiS ycfS ynhG family protein
JNN61_22130	COG0488	(ABC) transporter
JNN61_22140	COG2271	Major facilitator Superfamily
JNN61_22155	COG0561	phosphatase activity
JNN61_22160	COG1882	Formate acetyltransferase
JNN61_22165	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JNN61_22170	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JNN61_22175	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JNN61_22180	COG0303	'Molybdopterin
JNN61_22185	COG1446	asparaginase
JNN61_22195	COG0747	negative chemotaxis
JNN61_22210	COG2200	EAL domain
JNN61_22215	COG2199	diguanylate cyclase activity
JNN61_22240	COG2133	pyrroloquinoline quinone binding
JNN61_22245	COG0625	glutathione transferase activity
JNN61_22250	COG1686	Belongs to the peptidase S11 family
JNN61_22255	COG1349	DNA-binding transcription factor activity
JNN61_22260	COG0671	phosphoesterase, PA-phosphatase related
JNN61_22265	COG2814	Major facilitator Superfamily
JNN61_22275	COG0561	phosphatase activity
JNN61_22280	COG0738	Major facilitator superfamily
JNN61_22285	COG3226	Transcriptional regulator
JNN61_22300	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JNN61_22325	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JNN61_22330	COG3842	ATPase activity
JNN61_22335	COG1176	ABC-type spermidine putrescine transport system, permease component I
JNN61_22340	COG1177	transmembrane transport
JNN61_22355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_22360	COG4160	amino acid transport
JNN61_22365	COG4215	(ABC) transporter
JNN61_22370	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JNN61_22375	COG1126	abc transporter atp-binding protein
JNN61_22395	COG3023	N-Acetylmuramoyl-L-alanine amidase
JNN61_22400	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JNN61_22405	COG0702	epimerase
JNN61_22410	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
JNN61_22415	COG0028	Belongs to the TPP enzyme family
JNN61_22420	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JNN61_22430	COG2431	L-lysine efflux transmembrane transporter activity
JNN61_22435	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JNN61_22440	COG3593	DNA synthesis involved in DNA repair
JNN61_22445	COG2990	Protein conserved in bacteria
JNN61_22450	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JNN61_22460	COG1278	Cold shock
JNN61_22470	COG0542	response to heat
JNN61_22495	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JNN61_22500	COG4988	ABC transporter
JNN61_22505	COG0492	ferredoxin-NADP+ reductase activity
JNN61_22510	COG1522	sequence-specific DNA binding
JNN61_22515	COG1674	ftsk spoiiie
JNN61_22515	COG1178	ABC-type Fe3 transport system permease component
JNN61_22525	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JNN61_22535	COG0243	molybdopterin cofactor binding
JNN61_22540	COG0437	4 iron, 4 sulfur cluster binding
JNN61_22545	COG3302	dmso reductase anchor subunit
JNN61_22550	COG1335	isochorismatase
JNN61_22560	COG0531	amino acid
JNN61_22570	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JNN61_22575	COG1882	Formate acetyltransferase
JNN61_22580	COG2116	formate transmembrane transporter activity
JNN61_22585	COG1944	ATP diphosphatase activity
JNN61_22590	COG2323	membrane
JNN61_22605	COG0501	Belongs to the peptidase M48B family
JNN61_22615	COG0539	negative regulation of cytoplasmic translation
JNN61_22625	COG0658	competence protein
JNN61_22625	COG2333	competence protein COMEC
JNN61_22630	COG1132	(ABC) transporter
JNN61_22640	COG3214	Protein conserved in bacteria
JNN61_22655	COG3173	Aminoglycoside phosphotransferase
JNN61_22660	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JNN61_22665	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JNN61_22675	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JNN61_22685	COG2989	Protein conserved in bacteria
JNN61_22690	COG3108	Peptidase M15
JNN61_22695	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JNN61_22700	COG1448	Aminotransferase
JNN61_22720	COG0308	aminopeptidase N
JNN61_22725	COG1116	anion transmembrane transporter activity
JNN61_22730	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JNN61_22740	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JNN61_22745	COG0431	NADPH-dependent FMN reductase
JNN61_22750	COG3539	Fimbrial protein
JNN61_22755	COG3121	Chaperone
JNN61_22760	COG3188	usher protein
JNN61_22765	COG3539	Fimbrial protein
JNN61_22770	COG3539	Fimbrial protein
JNN61_22775	COG3539	Fimbrial protein
JNN61_22780	COG3121	Chaperone
JNN61_22795	COG3217	Mosc domain protein beta barrel domain protein
JNN61_22795	COG0633	Ferredoxin
JNN61_22805	COG0488	(ABC) transporter
JNN61_22810	COG2995	paraquat-inducible protein a
JNN61_22815	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JNN61_22815	COG3008	intermembrane lipid transfer
JNN61_22820	COG3009	Protein conserved in bacteria
JNN61_22825	COG3130	regulation of translation
JNN61_22835	COG1067	ATP-dependent peptidase activity
JNN61_22855	COG3070	regulator of competence-specific genes
JNN61_22860	COG1289	transmembrane transporter activity
JNN61_22865	COG3304	Inner membrane component domain
JNN61_22870	COG0210	DNA helicase
JNN61_22885	COG1832	CoA-binding protein
JNN61_22900	COG1254	Belongs to the acylphosphatase family
JNN61_22905	COG2920	part of a sulfur-relay system
JNN61_22910	COG0670	Belongs to the BI1 family
JNN61_22920	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
JNN61_22925	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
JNN61_22930	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
JNN61_22935	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JNN61_22940	COG1999	signal sequence binding
JNN61_22945	COG1773	rubredoxin
JNN61_22950	COG1271	oxidase subunit
JNN61_22955	COG1294	oxidase, subunit
JNN61_22970	COG1278	Cold shock
JNN61_22975	COG1278	Cold shock
JNN61_22995	COG0348	domain, Protein
JNN61_23000	COG0784	Response regulator, receiver
JNN61_23000	COG2198	Histidine kinase
JNN61_23000	COG2205	protein histidine kinase activity
JNN61_23005	COG1879	ABC-type sugar transport system periplasmic component
JNN61_23010	COG0745	RESPONSE REGULATOR receiver
JNN61_23015	COG3005	denitrification pathway
JNN61_23020	COG0243	molybdopterin cofactor binding
JNN61_23060	COG3729	General stress protein
JNN61_23065	COG2233	PERMEase
JNN61_23100	COG1309	transcriptional regulator
JNN61_23105	COG0506	proline dehydrogenase activity
JNN61_23105	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JNN61_23105	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JNN61_23115	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JNN61_23125	COG2822	iron ion transport
JNN61_23135	COG1702	phosphate starvation-inducible protein PhoH
JNN61_23140	COG3658	cytochrome
JNN61_23145	COG1215	transferase activity, transferring glycosyl groups
JNN61_23150	COG0726	polysaccharide deacetylase
JNN61_23150	COG1649	PFAM Uncharacterised BCR, COG1649
JNN61_23155	COG0457	Tetratricopeptide repeat
JNN61_23160	COG3706	GGDEF domain
JNN61_23165	COG0582	viral genome integration into host DNA
JNN61_23190	COG4983	Phage plasmid primase, P4 family domain protein
JNN61_23215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JNN61_23225	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JNN61_23230	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_23230	COG1263	PTS System
JNN61_23240	COG1349	DNA-binding transcription factor activity
JNN61_23260	COG1349	DNA-binding transcription factor activity
JNN61_23270	COG0738	Major facilitator superfamily
JNN61_23305	COG0583	DNA-binding transcription factor activity
JNN61_23315	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JNN61_23330	COG0531	amino acid
JNN61_23335	COG1982	Orn Lys Arg decarboxylase major
JNN61_23340	COG0531	amino acid
JNN61_23360	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JNN61_23375	COG2990	Protein conserved in bacteria
JNN61_23380	COG0297	glycogen (starch) synthase activity
JNN61_23385	COG0726	polysaccharide deacetylase
JNN61_23395	COG3344	reverse transcriptase
JNN61_23405	COG2085	NADP oxidoreductase coenzyme F420-dependent
JNN61_23410	COG1120	ATPase activity
JNN61_23415	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_23420	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_23425	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JNN61_23430	COG4772	TonB-dependent receptor
JNN61_23435	COG3712	iron ion homeostasis
JNN61_23440	COG1595	DNA-templated transcription, initiation
JNN61_23470	COG4372	Transposase
JNN61_23475	COG3436	PFAM IS66 Orf2 family protein
JNN61_23530	COG3468	outer membrane autotransporter barrel domain protein
JNN61_23535	COG2020	methyltransferase activity
JNN61_23560	COG2003	Belongs to the UPF0758 family
JNN61_23615	COG3381	protein complex oligomerization
JNN61_23625	COG1462	curli production assembly transport component CsgG
JNN61_23640	COG2197	response regulator
JNN61_23665	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JNN61_23670	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JNN61_23685	COG2943	transferase activity, transferring hexosyl groups
JNN61_23690	COG5645	(Lipo)protein
JNN61_23705	COG1560	Kdo2-lipid A biosynthetic process
JNN61_23720	COG3038	cytochrome b561
JNN61_23755	COG2999	glutathione oxidoreductase activity
JNN61_23765	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JNN61_23775	COG0673	inositol 2-dehydrogenase activity
JNN61_23780	COG0728	peptidoglycan biosynthetic process
JNN61_23785	COG3418	PFAM FlgN family protein
JNN61_23790	COG2747	anti-sigma28 factor FlgM
JNN61_23795	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
JNN61_23800	COG1815	bacterial-type flagellum-dependent cell motility
JNN61_23805	COG1558	bacterial-type flagellum-dependent cell motility
JNN61_23810	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JNN61_23815	COG1749	Flagellar hook protein flgE
JNN61_23820	COG4787	bacterial-type flagellum-dependent cell motility
JNN61_23825	COG4786	Flagellar basal body rod
JNN61_23835	COG1706	bacterial-type flagellum-dependent cell motility
JNN61_23840	COG1705	Flagellar rod assembly protein muramidase FlgJ
JNN61_23840	COG3951	Flagellar rod assembly protein muramidase FlgJ
JNN61_23845	COG1256	bacterial-type flagellum assembly
JNN61_23850	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JNN61_23865	COG1530	ribonuclease E activity
JNN61_23870	COG0564	pseudouridine synthase activity
JNN61_23875	COG0424	maF-like protein
JNN61_23880	COG1399	metal-binding, possibly nucleic acid-binding protein
JNN61_23900	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JNN61_23905	COG1028	Short-chain dehydrogenase reductase Sdr
JNN61_23915	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JNN61_23920	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JNN61_23925	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JNN61_23935	COG0470	DNA polymerase III
JNN61_23940	COG0084	hydrolase, TatD family'
JNN61_23945	COG1263	PTS System
JNN61_23945	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JNN61_23955	COG0537	adenosine 5'-monophosphoramidase activity
JNN61_23960	COG5633	Lipoprotein
JNN61_23965	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
JNN61_23985	COG1252	NADH dehydrogenase
JNN61_23990	COG3134	Outer membrane lipoprotein
JNN61_23995	COG1309	transcriptional regulator
JNN61_24005	COG1388	LysM domain
JNN61_24005	COG1376	ErfK ybiS ycfS ynhG family protein
JNN61_24010	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JNN61_24015	COG4763	Acyl-transferase
JNN61_24020	COG4591	ABC-type transport system involved in lipoprotein release permease component
JNN61_24030	COG4591	ABC-type transport system involved in lipoprotein release permease component
JNN61_24040	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JNN61_24045	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JNN61_24055	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JNN61_24060	COG1177	transmembrane transport
JNN61_24070	COG3842	ATPase activity
JNN61_24080	COG2850	peptidyl-arginine hydroxylation
JNN61_24085	COG2205	protein histidine kinase activity
JNN61_24095	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JNN61_24115	COG1187	pseudouridine synthase activity
JNN61_24130	COG0538	isocitrate dehydrogenase activity
JNN61_24160	COG5562	phage envelope protein
JNN61_24165	COG0789	Transcriptional regulator
JNN61_24170	COG2200	EAL domain
JNN61_24195	COG2200	EAL domain
JNN61_24235	COG3468	outer membrane autotransporter barrel domain protein
JNN61_24245	COG2894	cell division
JNN61_24270	COG0179	Fumarylacetoacetate (FAA) hydrolase
JNN61_24285	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JNN61_24290	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JNN61_24295	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JNN61_24310	COG2719	SpoVR family
JNN61_24320	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JNN61_24340	COG1619	proteins homologs of microcin C7 resistance protein MccF
JNN61_24350	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
JNN61_24365	COG0157	Belongs to the NadC ModD family
JNN61_24370	COG0500	methyltransferase
JNN61_24375	COG1120	ATPase activity
JNN61_24380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JNN61_24385	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JNN61_24395	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JNN61_24395	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JNN61_24395	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
JNN61_24400	COG1461	Dihydroxyacetone kinase
JNN61_24405	COG2376	Dihydroxyacetone kinase
JNN61_24410	COG3284	Transcriptional regulator
JNN61_24415	COG3468	outer membrane autotransporter barrel domain protein
JNN61_24420	COG0012	GTP binding
JNN61_24435	COG0659	secondary active sulfate transmembrane transporter activity
JNN61_24440	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JNN61_24465	COG2890	protein-(glutamine-N5) methyltransferase activity
JNN61_24470	COG3094	Invasion gene expression up-regulator, SirB
JNN61_24475	COG2912	Transglutaminase-like superfamily
JNN61_24500	COG0387	Pfam Sodium calcium exchanger
JNN61_24505	COG4572	Cation transport regulator
JNN61_24510	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
JNN61_24515	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JNN61_24520	COG4932	domain protein
JNN61_24525	COG2197	response regulator
JNN61_24530	COG3850	Histidine kinase
JNN61_24535	COG2223	nitrite transmembrane transporter activity
JNN61_24540	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JNN61_24545	COG1140	nitrate reductase beta subunit
JNN61_24550	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JNN61_24555	COG2181	nitrate reductase activity
JNN61_24585	COG0788	formyltetrahydrofolate deformylase activity
JNN61_24595	COG1752	Esterase of the alpha-beta hydrolase superfamily
JNN61_24600	COG0745	RESPONSE REGULATOR receiver
JNN61_24605	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JNN61_24615	COG1435	thymidine kinase activity
JNN61_24620	COG1454	alcohol dehydrogenase
JNN61_24620	COG1012	belongs to the aldehyde dehydrogenase family
JNN61_24625	COG2095	MarC family integral membrane protein
JNN61_24635	COG4166	transmembrane transport
JNN61_24640	COG0601	transmembrane transport
JNN61_24645	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JNN61_24650	COG0444	Belongs to the ABC transporter superfamily
JNN61_24655	COG4608	Belongs to the ABC transporter superfamily
JNN61_24675	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JNN61_24680	COG2350	Protein conserved in bacteria
JNN61_24685	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JNN61_24690	COG1607	acyl-coa hydrolase
JNN61_24710	COG3047	cAMP biosynthetic process
JNN61_24715	COG0582	viral genome integration into host DNA
JNN61_24725	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JNN61_24740	COG3646	Phage regulatory protein
JNN61_24790	COG1846	Transcriptional regulator
JNN61_24875	COG1403	HNH endonuclease
JNN61_24880	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
JNN61_24885	COG0484	heat shock protein binding
JNN61_24945	COG3772	lysozyme