locus-tag class description RN84_00010 PF00009 Elongation factor Tu GTP binding domain RN84_00010 PF03144 Elongation factor Tu domain 2 RN84_00010 PF03143 Elongation factor Tu C-terminal domain RN84_00015 PF14492 Elongation Factor G, domain II RN84_00015 PF03764 Elongation factor G, domain IV RN84_00015 PF00009 Elongation factor Tu GTP binding domain RN84_00015 PF03144 Elongation factor Tu domain 2 RN84_00015 PF00679 Elongation factor G C-terminus RN84_00020 PF00177 Ribosomal protein S7p/S5e RN84_00025 PF00164 Ribosomal protein S12/S23 RN84_00030 PF03471 Transporter associated domain RN84_00030 PF02080 TrkA-C domain RN84_00030 PF00999 Sodium/hydrogen exchanger family RN84_00045 PF00793 DAHP synthetase I family RN84_00045 PF18152 DAHP synthase ferredoxin-like domain RN84_00110 PF01541 GIY-YIG catalytic domain RN84_00115 PF09115 DNA polymerase III, delta subunit, C terminal RN84_00125 PF00636 Ribonuclease III domain RN84_00130 PF09190 DALR domain RN84_00130 PF01406 tRNA synthetases class I (C) catalytic domain RN84_00135 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RN84_00140 PF01713 Smr domain RN84_00140 PF00488 MutS domain V RN84_00165 PF13378 Enolase C-terminal domain-like RN84_00165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RN84_00175 PF00717 Peptidase S24-like RN84_00175 PF01726 LexA DNA binding domain RN84_00185 PF00037 4Fe-4S binding domain RN84_00185 PF04060 Putative Fe-S cluster RN84_00185 PF13187 4Fe-4S dicluster domain RN84_00190 PF02508 Rnf-Nqr subunit, membrane protein RN84_00195 PF02508 Rnf-Nqr subunit, membrane protein RN84_00200 PF04205 FMN-binding domain RN84_00205 PF03116 NQR2, RnfD, RnfE family RN84_00210 PF10531 SLBB domain RN84_00210 PF13375 RnfC Barrel sandwich hybrid domain RN84_00210 PF13237 4Fe-4S dicluster domain RN84_00210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RN84_00215 PF01195 Peptidyl-tRNA hydrolase RN84_00230 PF01416 tRNA pseudouridine synthase RN84_00240 PF04463 Protein of unknown function (DUF523) RN84_00255 PF00709 Adenylosuccinate synthetase RN84_00260 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RN84_00260 PF02390 Putative methyltransferase RN84_00265 PF02224 Cytidylate kinase RN84_00275 PF13277 YmdB-like protein RN84_00280 PF01430 Hsp33 protein RN84_00290 PF04055 Radical SAM superfamily RN84_00295 PF00437 Type II/IV secretion system protein RN84_00300 PF01078 Magnesium chelatase, subunit ChlI RN84_00300 PF13335 Magnesium chelatase, subunit ChlI C-terminal RN84_00305 PF02659 Putative manganese efflux pump RN84_00310 PF01029 NusB family RN84_00330 PF00318 Ribosomal protein S2 RN84_00335 PF00889 Elongation factor TS RN84_00340 PF00696 Amino acid kinase family RN84_00345 PF01765 Ribosome recycling factor RN84_00350 PF00344 SecY translocase RN84_00355 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RN84_00360 PF00327 Ribosomal protein L30p/L7e RN84_00365 PF00333 Ribosomal protein S5, N-terminal domain RN84_00365 PF03719 Ribosomal protein S5, C-terminal domain RN84_00370 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RN84_00375 PF00347 Ribosomal protein L6 RN84_00380 PF00410 Ribosomal protein S8 RN84_00385 PF00253 Ribosomal protein S14p/S29e RN84_00390 PF00673 ribosomal L5P family C-terminus RN84_00390 PF00281 Ribosomal protein L5 RN84_00395 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RN84_00395 PF00467 KOW motif RN84_00400 PF00238 Ribosomal protein L14p/L23e RN84_00405 PF00366 Ribosomal protein S17 RN84_00410 PF00831 Ribosomal L29 protein RN84_00415 PF00252 Ribosomal protein L16p/L10e RN84_00420 PF00189 Ribosomal protein S3, C-terminal domain RN84_00420 PF07650 KH domain RN84_00425 PF00237 Ribosomal protein L22p/L17e RN84_00430 PF00203 Ribosomal protein S19 RN84_00435 PF00181 Ribosomal Proteins L2, RNA binding domain RN84_00435 PF03947 Ribosomal Proteins L2, C-terminal domain RN84_00440 PF00276 Ribosomal protein L23 RN84_00445 PF00573 Ribosomal protein L4/L1 family RN84_00450 PF00297 Ribosomal protein L3 RN84_00455 PF00338 Ribosomal protein S10p/S20e RN84_00465 PF00005 ABC transporter RN84_00465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_00470 PF00005 ABC transporter RN84_00475 PF12911 N-terminal TM domain of oligopeptide transport permease C RN84_00475 PF00528 Binding-protein-dependent transport system inner membrane component RN84_00480 PF00528 Binding-protein-dependent transport system inner membrane component RN84_00485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_00490 PF01554 MatE RN84_00505 PF01435 Peptidase family M48 RN84_00510 PF01084 Ribosomal protein S18 RN84_00515 PF01250 Ribosomal protein S6 RN84_00520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RN84_00520 PF03129 Anticodon binding domain RN84_00520 PF04073 Aminoacyl-tRNA editing domain RN84_00525 PF17191 RecG wedge domain RN84_00525 PF00271 Helicase conserved C-terminal domain RN84_00525 PF00270 DEAD/DEAH box helicase RN84_00530 PF01709 Transcriptional regulator RN84_00565 PF16363 GDP-mannose 4,6 dehydratase RN84_00645 PF03102 NeuB family RN84_00645 PF08666 SAF domain RN84_00650 PF16363 GDP-mannose 4,6 dehydratase RN84_00655 PF02348 Cytidylyltransferase RN84_00670 PF02719 Polysaccharide biosynthesis protein RN84_00685 PF00535 Glycosyl transferase family 2 RN84_00700 PF02397 Bacterial sugar transferase RN84_00705 PF02719 Polysaccharide biosynthesis protein RN84_00730 PF02673 Bacitracin resistance protein BacA RN84_00735 PF01370 NAD dependent epimerase/dehydratase family RN84_00740 PF01734 Patatin-like phospholipase RN84_00745 PF01925 Sulfite exporter TauE/SafE RN84_00750 PF01263 Aldose 1-epimerase RN84_00755 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RN84_00755 PF00575 S1 RNA binding domain RN84_00755 PF01138 3' exoribonuclease family, domain 1 RN84_00755 PF03725 3' exoribonuclease family, domain 2 RN84_00755 PF00013 KH domain RN84_00760 PF01066 CDP-alcohol phosphatidyltransferase RN84_00770 PF01795 MraW methylase family RN84_00780 PF05958 tRNA (Uracil-5-)-methyltransferase RN84_00805 PF12826 Helix-hairpin-helix motif RN84_00805 PF00533 BRCA1 C Terminus (BRCT) domain RN84_00805 PF01653 NAD-dependent DNA ligase adenylation domain RN84_00805 PF03120 NAD-dependent DNA ligase OB-fold domain RN84_00805 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RN84_00810 PF07517 SecA DEAD-like domain RN84_00810 PF01043 SecA preprotein cross-linking domain RN84_00810 PF07516 SecA Wing and Scaffold domain RN84_00810 PF02810 SEC-C motif RN84_00820 PF02527 rRNA small subunit methyltransferase G RN84_00825 PF01134 Glucose inhibited division protein A RN84_00825 PF13932 GidA associated domain RN84_00830 PF02254 TrkA-N domain RN84_00830 PF02080 TrkA-C domain RN84_00835 PF02386 Cation transport protein RN84_00840 PF01554 MatE RN84_00845 PF00654 Voltage gated chloride channel RN84_00850 PF01470 Pyroglutamyl peptidase RN84_00860 PF04715 Anthranilate synthase component I, N terminal region RN84_00860 PF00425 chorismate binding enzyme RN84_00865 PF00117 Glutamine amidotransferase class-I RN84_00875 PF01813 ATP synthase subunit D RN84_00880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN84_00880 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN84_00885 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN84_00885 PF16886 ATPsynthase alpha/beta subunit N-term extension RN84_00885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN84_00890 PF01990 ATP synthase (F/14-kDa) subunit RN84_00895 PF01992 ATP synthase (C/AC39) subunit RN84_00900 PF01991 ATP synthase (E/31 kDa) subunit RN84_00905 PF00137 ATP synthase subunit C RN84_00910 PF01496 V-type ATPase 116kDa subunit family RN84_00920 PF02581 Thiamine monophosphate synthase RN84_00925 PF06968 Biotin and Thiamin Synthesis associated domain RN84_00925 PF04055 Radical SAM superfamily RN84_00930 PF05690 Thiazole biosynthesis protein ThiG RN84_00945 PF01964 Radical SAM ThiC family RN84_00950 PF02581 Thiamine monophosphate synthase RN84_00955 PF08543 Phosphomethylpyrimidine kinase RN84_00970 PF03883 Peroxide stress protein YaaA RN84_00980 PF03952 Enolase, N-terminal domain RN84_00980 PF00113 Enolase, C-terminal TIM barrel domain RN84_00985 PF00224 Pyruvate kinase, barrel domain RN84_00985 PF02887 Pyruvate kinase, alpha/beta domain RN84_01050 PF00575 S1 RNA binding domain RN84_01050 PF02401 LytB protein RN84_01055 PF00381 PTS HPr component phosphorylation site RN84_01075 PF00294 pfkB family carbohydrate kinase RN84_01075 PF01467 Cytidylyltransferase-like RN84_01080 PF02542 YgbB family RN84_01085 PF01554 MatE RN84_01090 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RN84_01095 PF00293 NUDIX domain RN84_01105 PF02896 PEP-utilising enzyme, TIM barrel domain RN84_01105 PF00391 PEP-utilising enzyme, mobile domain RN84_01105 PF05524 PEP-utilising enzyme, N-terminal RN84_01110 PF00381 PTS HPr component phosphorylation site RN84_01125 PF08402 TOBE domain RN84_01125 PF00005 ABC transporter RN84_01130 PF00528 Binding-protein-dependent transport system inner membrane component RN84_01135 PF00528 Binding-protein-dependent transport system inner membrane component RN84_01140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RN84_01145 PF03616 Sodium/glutamate symporter RN84_01150 PF00440 Bacterial regulatory proteins, tetR family RN84_01155 PF01546 Peptidase family M20/M25/M40 RN84_01155 PF07687 Peptidase dimerisation domain RN84_01185 PF00950 ABC 3 transport family RN84_01190 PF00005 ABC transporter RN84_01200 PF01297 Zinc-uptake complex component A periplasmic RN84_01225 PF08479 POTRA domain, ShlB-type RN84_01225 PF17287 POTRA domain RN84_01225 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RN84_01230 PF00005 ABC transporter RN84_01240 PF02492 CobW/HypB/UreG, nucleotide-binding domain RN84_01250 PF04055 Radical SAM superfamily RN84_01250 PF01018 GTP1/OBG RN84_01250 PF01926 50S ribosome-binding GTPase RN84_01290 PF00226 DnaJ domain RN84_01290 PF00684 DnaJ central domain RN84_01290 PF01556 DnaJ C terminal domain RN84_01295 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RN84_01295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RN84_01300 PF00012 Hsp70 protein RN84_01305 PF01025 GrpE RN84_01310 PF01628 HrcA protein C terminal domain RN84_01320 PF02403 Seryl-tRNA synthetase N-terminal domain RN84_01320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RN84_01330 PF02016 LD-carboxypeptidase N-terminal domain RN84_01330 PF17676 LD-carboxypeptidase C-terminal domain RN84_01335 PF00474 Sodium:solute symporter family RN84_01355 PF00268 Ribonucleotide reductase, small chain RN84_01360 PF03477 ATP cone domain RN84_01360 PF02867 Ribonucleotide reductase, barrel domain RN84_01360 PF00317 Ribonucleotide reductase, all-alpha domain RN84_01370 PF00970 Oxidoreductase FAD-binding domain RN84_01370 PF00111 2Fe-2S iron-sulfur cluster binding domain RN84_01370 PF00175 Oxidoreductase NAD-binding domain RN84_01375 PF00719 Inorganic pyrophosphatase RN84_01400 PF01048 Phosphorylase superfamily RN84_01405 PF02626 Carboxyltransferase domain, subdomain A and B RN84_01420 PF00085 Thioredoxin RN84_01425 PF00465 Iron-containing alcohol dehydrogenase RN84_01440 PF04346 Ethanolamine utilisation protein, EutH RN84_01465 PF00465 Iron-containing alcohol dehydrogenase RN84_01465 PF00171 Aldehyde dehydrogenase family RN84_01470 PF00936 BMC domain RN84_01480 PF00936 BMC domain RN84_01485 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RN84_01490 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RN84_01495 PF06277 Ethanolamine utilisation protein EutA RN84_01500 PF12282 Signal transduction histidine kinase RN84_01500 PF07568 Histidine kinase RN84_01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_01505 PF00072 Response regulator receiver domain RN84_01505 PF03861 ANTAR domain RN84_01510 PF10662 Ethanolamine utilisation - propanediol utilisation RN84_01515 PF00936 BMC domain RN84_01520 PF00809 Pterin binding enzyme RN84_01525 PF02152 Dihydroneopterin aldolase RN84_01525 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RN84_01530 PF01227 GTP cyclohydrolase I RN84_01535 PF05746 DALR anticodon binding domain RN84_01535 PF02092 Glycyl-tRNA synthetase beta subunit RN84_01540 PF02091 Glycyl-tRNA synthetase alpha subunit RN84_01545 PF01252 Signal peptidase (SPase) II RN84_01550 PF00133 tRNA synthetases class I (I, L, M and V) RN84_01550 PF06827 Zinc finger found in FPG and IleRS RN84_01550 PF08264 Anticodon-binding domain of tRNA RN84_01555 PF00512 His Kinase A (phospho-acceptor) domain RN84_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_01560 PF17674 HHH domain RN84_01560 PF00575 S1 RNA binding domain RN84_01560 PF09371 Tex-like protein N-terminal domain RN84_01560 PF16921 Tex protein YqgF-like domain RN84_01580 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RN84_01590 PF01592 NifU-like N terminal domain RN84_01595 PF00266 Aminotransferase class-V RN84_01600 PF00633 Helix-hairpin-helix motif RN84_01600 PF00730 HhH-GPD superfamily base excision DNA repair protein RN84_01615 PF00579 tRNA synthetases class I (W and Y) RN84_01620 PF05525 Branched-chain amino acid transport protein RN84_01625 PF03960 ArsC family RN84_01630 PF00890 FAD binding domain RN84_01630 PF14537 Cytochrome c3 RN84_01640 PF13344 Haloacid dehalogenase-like hydrolase RN84_01645 PF03372 Endonuclease/Exonuclease/phosphatase family RN84_01655 PF01220 Dehydroquinase class II RN84_01660 PF08501 Shikimate dehydrogenase substrate binding domain RN84_01675 PF01098 Cell cycle protein RN84_01685 PF01336 OB-fold nucleic acid binding domain RN84_01685 PF00152 tRNA synthetases class II (D, K and N) RN84_01690 PF13331 Domain of unknown function (DUF4093) RN84_01690 PF01751 Toprim domain RN84_01745 PF00258 Flavodoxin RN84_01770 PF03606 C4-dicarboxylate anaerobic carrier RN84_01775 PF04026 SpoVG RN84_01785 PF01479 S4 domain RN84_01790 PF17757 UvrB interaction domain RN84_01790 PF03461 TRCF domain RN84_01790 PF02559 CarD-like/TRCF domain RN84_01790 PF00271 Helicase conserved C-terminal domain RN84_01790 PF00270 DEAD/DEAH box helicase RN84_01830 PF08279 HTH domain RN84_01830 PF02829 3H domain RN84_01835 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RN84_01835 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RN84_01840 PF00890 FAD binding domain RN84_01845 PF02445 Quinolinate synthetase A protein RN84_01850 PF01134 Glucose inhibited division protein A RN84_01850 PF13932 GidA associated domain RN84_01855 PF12631 MnmE helical domain RN84_01855 PF01926 50S ribosome-binding GTPase RN84_01855 PF10396 GTP-binding protein TrmE N-terminus RN84_01860 PF01424 R3H domain RN84_01860 PF14804 Jag N-terminus RN84_01865 PF02096 60Kd inner membrane protein RN84_01870 PF01809 Putative membrane protein insertion efficiency factor RN84_01875 PF00825 Ribonuclease P RN84_01880 PF00468 Ribosomal protein L34 RN84_01895 PF02463 RecF/RecN/SMC N terminal domain RN84_01905 PF00204 DNA gyrase B RN84_01905 PF01751 Toprim domain RN84_01905 PF00986 DNA gyrase B subunit, carboxyl terminus RN84_01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_01910 PF00521 DNA gyrase/topoisomerase IV, subunit A RN84_01910 PF03989 DNA gyrase C-terminal domain, beta-propeller RN84_01920 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RN84_01920 PF01409 tRNA synthetases class II core domain (F) RN84_01925 PF03483 B3/4 domain RN84_01925 PF03147 Ferredoxin-fold anticodon binding domain RN84_01925 PF01588 Putative tRNA binding domain RN84_01925 PF03484 tRNA synthetase B5 domain RN84_01925 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RN84_01990 PF16363 GDP-mannose 4,6 dehydratase RN84_01995 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RN84_01995 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RN84_02000 PF10509 Galactokinase galactose-binding signature RN84_02000 PF08544 GHMP kinases C terminal RN84_02000 PF00288 GHMP kinases N terminal domain RN84_02005 PF03606 C4-dicarboxylate anaerobic carrier RN84_02010 PF01970 Tripartite tricarboxylate transporter TctA family RN84_02020 PF03401 Tripartite tricarboxylate transporter family receptor RN84_02025 PF00005 ABC transporter RN84_02025 PF16326 ABC transporter C-terminal domain RN84_02025 PF12848 ABC transporter RN84_02030 PF00892 EamA-like transporter family RN84_02040 PF04304 Protein of unknown function (DUF454) RN84_02045 PF10609 NUBPL iron-transfer P-loop NTPase RN84_02060 PF00437 Type II/IV secretion system protein RN84_02065 PF00482 Type II secretion system (T2SS), protein F RN84_02070 PF07963 Prokaryotic N-terminal methylation motif RN84_02070 PF00114 Pilin (bacterial filament) RN84_02105 PF03958 Bacterial type II/III secretion system short domain RN84_02105 PF00263 Bacterial type II and III secretion system protein RN84_02125 PF01268 Formate--tetrahydrofolate ligase RN84_02135 PF02653 Branched-chain amino acid transport system / permease component RN84_02140 PF09383 NIL domain RN84_02140 PF00005 ABC transporter RN84_02155 PF01381 Helix-turn-helix RN84_02165 PF01555 DNA methylase RN84_02170 PF00156 Phosphoribosyl transferase domain RN84_02195 PF01235 Sodium:alanine symporter family RN84_02200 PF01966 HD domain RN84_02205 PF00578 AhpC/TSA family RN84_02245 PF00691 OmpA family RN84_02265 PF00342 Phosphoglucose isomerase RN84_02270 PF00375 Sodium:dicarboxylate symporter family RN84_02295 PF00691 OmpA family RN84_02325 PF01145 SPFH domain / Band 7 family RN84_02335 PF02378 Phosphotransferase system, EIIC RN84_02335 PF00367 phosphotransferase system, EIIB RN84_02340 PF00009 Elongation factor Tu GTP binding domain RN84_02340 PF03764 Elongation factor G, domain IV RN84_02340 PF14492 Elongation Factor G, domain II RN84_02340 PF00679 Elongation factor G C-terminus RN84_02340 PF03144 Elongation factor Tu domain 2 RN84_02350 PF01494 FAD binding domain RN84_02355 PF01209 ubiE/COQ5 methyltransferase family RN84_02365 PF00348 Polyprenyl synthetase RN84_02370 PF11870 Domain of unknown function (DUF3390) RN84_02370 PF02589 LUD domain RN84_02370 PF13183 4Fe-4S dicluster domain RN84_02375 PF02589 LUD domain RN84_02380 PF17886 HSP20-like domain found in ArsA RN84_02380 PF02374 Anion-transporting ATPase RN84_02385 PF17886 HSP20-like domain found in ArsA RN84_02385 PF02374 Anion-transporting ATPase RN84_02390 PF01565 FAD binding domain RN84_02390 PF02913 FAD linked oxidases, C-terminal domain RN84_02395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RN84_02395 PF02770 Acyl-CoA dehydrogenase, middle domain RN84_02395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RN84_02400 PF01012 Electron transfer flavoprotein domain RN84_02405 PF01012 Electron transfer flavoprotein domain RN84_02405 PF00766 Electron transfer flavoprotein FAD-binding domain RN84_02410 PF03788 LrgA family RN84_02440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_02440 PF00005 ABC transporter RN84_02445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_02445 PF00005 ABC transporter RN84_02450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_02455 PF12911 N-terminal TM domain of oligopeptide transport permease C RN84_02455 PF00528 Binding-protein-dependent transport system inner membrane component RN84_02460 PF00528 Binding-protein-dependent transport system inner membrane component RN84_02465 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RN84_02470 PF00588 SpoU rRNA Methylase family RN84_02470 PF08032 RNA 2'-O ribose methyltransferase substrate binding RN84_02475 PF04542 Sigma-70 region 2 RN84_02475 PF08281 Sigma-70, region 4 RN84_02480 PF13603 Leucyl-tRNA synthetase, Domain 2 RN84_02480 PF09334 tRNA synthetases class I (M) RN84_02480 PF08264 Anticodon-binding domain of tRNA RN84_02480 PF00133 tRNA synthetases class I (I, L, M and V) RN84_02515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RN84_02515 PF00925 GTP cyclohydrolase II RN84_02520 PF00677 Lumazine binding domain RN84_02530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RN84_02530 PF01872 RibD C-terminal domain RN84_02535 PF00885 6,7-dimethyl-8-ribityllumazine synthase RN84_02540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_02545 PF00528 Binding-protein-dependent transport system inner membrane component RN84_02550 PF00528 Binding-protein-dependent transport system inner membrane component RN84_02555 PF00005 ABC transporter RN84_02560 PF00005 ABC transporter RN84_02570 PF00892 EamA-like transporter family RN84_02575 PF07690 Major Facilitator Superfamily RN84_02580 PF04085 rod shape-determining protein MreC RN84_02595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RN84_02595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RN84_02600 PF03477 ATP cone domain RN84_02605 PF02911 Formyl transferase, C-terminal domain RN84_02605 PF00551 Formyl transferase RN84_02610 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RN84_02610 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RN84_02615 PF13291 ACT domain RN84_02620 PF01595 Cyclin M transmembrane N-terminal domain RN84_02620 PF00571 CBS domain RN84_02620 PF03471 Transporter associated domain RN84_02635 PF00156 Phosphoribosyl transferase domain RN84_02640 PF02824 TGS domain RN84_02640 PF04607 Region found in RelA / SpoT proteins RN84_02640 PF13291 ACT domain RN84_02645 PF01702 Queuine tRNA-ribosyltransferase RN84_02650 PF00571 CBS domain RN84_02650 PF01769 Divalent cation transporter RN84_02650 PF03448 MgtE intracellular N domain RN84_02670 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RN84_02675 PF00701 Dihydrodipicolinate synthetase family RN84_02680 PF00480 ROK family RN84_02685 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RN84_02685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RN84_02690 PF03480 Bacterial extracellular solute-binding protein, family 7 RN84_02695 PF00356 Bacterial regulatory proteins, lacI family RN84_02700 PF01344 Kelch motif RN84_02740 PF01680 SOR/SNZ family RN84_02745 PF00155 Aminotransferase class I and II RN84_02745 PF00392 Bacterial regulatory proteins, gntR family RN84_02750 PF01225 Mur ligase family, catalytic domain RN84_02750 PF08245 Mur ligase middle domain RN84_02750 PF02875 Mur ligase family, glutamate ligase domain RN84_02760 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RN84_02760 PF00953 Glycosyl transferase family 4 RN84_02765 PF08245 Mur ligase middle domain RN84_02770 PF03033 Glycosyltransferase family 28 N-terminal domain RN84_02770 PF04101 Glycosyltransferase family 28 C-terminal domain RN84_02775 PF01225 Mur ligase family, catalytic domain RN84_02775 PF08245 Mur ligase middle domain RN84_02775 PF02875 Mur ligase family, glutamate ligase domain RN84_02780 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RN84_02780 PF01565 FAD binding domain RN84_02785 PF07478 D-ala D-ala ligase C-terminus RN84_02785 PF01820 D-ala D-ala ligase N-terminus RN84_02795 PF02491 SHS2 domain inserted in FTSA RN84_02800 PF00091 Tubulin/FtsZ family, GTPase domain RN84_02800 PF12327 FtsZ family, C-terminal domain RN84_02805 PF02080 TrkA-C domain RN84_02805 PF06826 Predicted Permease Membrane Region RN84_02815 PF17761 DUF1016 N-terminal domain RN84_02815 PF06250 YhcG PDDEXK nuclease domain RN84_02835 PF13086 AAA domain RN84_02835 PF13195 Protein of unknown function (DUF4011) RN84_02835 PF13087 AAA domain RN84_02865 PF02384 N-6 DNA Methylase RN84_02870 PF02540 NAD synthase RN84_02870 PF00117 Glutamine amidotransferase class-I RN84_02870 PF00958 GMP synthase C terminal domain RN84_02875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RN84_02875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RN84_02880 PF00294 pfkB family carbohydrate kinase RN84_02885 PF00455 DeoR C terminal sensor domain RN84_02885 PF08220 DeoR-like helix-turn-helix domain RN84_02895 PF00830 Ribosomal L28 family RN84_02915 PF00106 short chain dehydrogenase RN84_02920 PF13458 Periplasmic binding protein RN84_02925 PF02653 Branched-chain amino acid transport system / permease component RN84_02930 PF02653 Branched-chain amino acid transport system / permease component RN84_02930 PF11862 Domain of unknown function (DUF3382) RN84_02935 PF00005 ABC transporter RN84_02935 PF12399 Branched-chain amino acid ATP-binding cassette transporter RN84_02940 PF00005 ABC transporter RN84_02945 PF02567 Phenazine biosynthesis-like protein RN84_02950 PF03797 Autotransporter beta-domain RN84_02950 PF12951 Passenger-associated-transport-repeat RN84_02950 PF00082 Subtilase family RN84_02955 PF00557 Metallopeptidase family M24 RN84_02955 PF05195 Aminopeptidase P, N-terminal domain RN84_02970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RN84_02970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RN84_02970 PF02770 Acyl-CoA dehydrogenase, middle domain RN84_02975 PF00753 Metallo-beta-lactamase superfamily RN84_02975 PF00301 Rubredoxin RN84_02975 PF00258 Flavodoxin RN84_02985 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RN84_02985 PF10371 Domain of unknown function RN84_02985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RN84_02985 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RN84_02985 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RN84_02995 PF01053 Cys/Met metabolism PLP-dependent enzyme RN84_03000 PF00155 Aminotransferase class I and II RN84_03005 PF00596 Class II Aldolase and Adducin N-terminal domain RN84_03010 PF00155 Aminotransferase class I and II RN84_03015 PF00465 Iron-containing alcohol dehydrogenase RN84_03030 PF01636 Phosphotransferase enzyme family RN84_03035 PF00291 Pyridoxal-phosphate dependent enzyme RN84_03035 PF13291 ACT domain RN84_03045 PF07687 Peptidase dimerisation domain RN84_03045 PF01546 Peptidase family M20/M25/M40 RN84_03050 PF07837 Formiminotransferase domain, N-terminal subdomain RN84_03050 PF02971 Formiminotransferase domain RN84_03055 PF00221 Aromatic amino acid lyase RN84_03065 PF01979 Amidohydrolase family RN84_03070 PF13726 Na+-H+ antiporter family RN84_03070 PF03553 Na+/H+ antiporter family RN84_03080 PF01175 Urocanase Rossmann-like domain RN84_03080 PF17392 Urocanase C-terminal domain RN84_03080 PF17391 Urocanase N-terminal domain RN84_03085 PF03704 Bacterial transcriptional activator domain RN84_03085 PF00486 Transcriptional regulatory protein, C terminal RN84_03095 PF01235 Sodium:alanine symporter family RN84_03100 PF04960 Glutaminase RN84_03110 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RN84_03115 PF00448 SRP54-type protein, GTPase domain RN84_03115 PF02978 Signal peptide binding domain RN84_03115 PF02881 SRP54-type protein, helical bundle domain RN84_03120 PF00886 Ribosomal protein S16 RN84_03150 PF12419 SNF2 Helicase protein RN84_03150 PF00176 SNF2 family N-terminal domain RN84_03150 PF00271 Helicase conserved C-terminal domain RN84_03165 PF14579 Helix-hairpin-helix motif RN84_03165 PF02811 PHP domain RN84_03165 PF01336 OB-fold nucleic acid binding domain RN84_03165 PF07733 Bacterial DNA polymerase III alpha NTPase domain RN84_03165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RN84_03170 PF13173 AAA domain RN84_03170 PF13635 Domain of unknown function (DUF4143) RN84_03180 PF04223 Citrate lyase, alpha subunit (CitF) RN84_03185 PF03328 HpcH/HpaI aldolase/citrate lyase family RN84_03190 PF06857 Malonate decarboxylase delta subunit (MdcD) RN84_03195 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RN84_03200 PF00364 Biotin-requiring enzyme RN84_03200 PF00682 HMGL-like RN84_03200 PF02436 Conserved carboxylase domain RN84_03205 PF03390 2-hydroxycarboxylate transporter family RN84_03215 PF04073 Aminoacyl-tRNA editing domain RN84_03220 PF00849 RNA pseudouridylate synthase RN84_03220 PF01479 S4 domain RN84_03225 PF01351 Ribonuclease HII RN84_03230 PF02021 Uncharacterised protein family UPF0102 RN84_03250 PF00121 Triosephosphate isomerase RN84_03255 PF01926 50S ribosome-binding GTPase RN84_03255 PF06071 Protein of unknown function (DUF933) RN84_03260 PF01783 Ribosomal L32p protein family RN84_03265 PF00005 ABC transporter RN84_03265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_03270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_03270 PF00005 ABC transporter RN84_03275 PF00528 Binding-protein-dependent transport system inner membrane component RN84_03275 PF12911 N-terminal TM domain of oligopeptide transport permease C RN84_03280 PF00528 Binding-protein-dependent transport system inner membrane component RN84_03285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_03305 PF02687 FtsX-like permease family RN84_03305 PF12704 MacB-like periplasmic core domain RN84_03310 PF02687 FtsX-like permease family RN84_03310 PF12704 MacB-like periplasmic core domain RN84_03310 PF00005 ABC transporter RN84_03315 PF00005 ABC transporter RN84_03335 PF00005 ABC transporter RN84_03365 PF01026 TatD related DNase RN84_03370 PF01648 4'-phosphopantetheinyl transferase superfamily RN84_03375 PF00472 RF-1 domain RN84_03375 PF03462 PCRF domain RN84_03395 PF00749 tRNA synthetases class I (E and Q), catalytic domain RN84_03425 PF02899 Phage integrase, N-terminal SAM-like domain RN84_03425 PF00589 Phage integrase family RN84_03575 PF03592 Terminase small subunit RN84_03590 PF01129 NAD:arginine ADP-ribosyltransferase RN84_03680 PF04865 Baseplate J-like protein RN84_03745 PF11741 AMIN domain RN84_03745 PF01520 N-acetylmuramoyl-L-alanine amidase RN84_03755 PF00472 RF-1 domain RN84_03755 PF03462 PCRF domain RN84_03760 PF05175 Methyltransferase small domain RN84_03760 PF17827 PrmC N-terminal domain RN84_03765 PF02547 Queuosine biosynthesis protein RN84_03775 PF02609 Exonuclease VII small subunit RN84_03780 PF00348 Polyprenyl synthetase RN84_03785 PF03781 Sulfatase-modifying factor enzyme 1 RN84_03790 PF01255 Putative undecaprenyl diphosphate synthase RN84_03800 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RN84_03800 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RN84_03800 PF13288 DXP reductoisomerase C-terminal domain RN84_03810 PF00595 PDZ domain RN84_03810 PF02163 Peptidase family M50 RN84_03815 PF02954 Bacterial regulatory protein, Fis family RN84_03815 PF00158 Sigma-54 interaction domain RN84_03815 PF00072 Response regulator receiver domain RN84_03820 PF13145 PPIC-type PPIASE domain RN84_03825 PF10410 DnaB-helicase binding domain of primase RN84_03825 PF08275 DNA primase catalytic core, N-terminal domain RN84_03825 PF01807 CHC2 zinc finger RN84_03830 PF04545 Sigma-70, region 4 RN84_03830 PF04542 Sigma-70 region 2 RN84_03830 PF00140 Sigma-70 factor, region 1.2 RN84_03830 PF04539 Sigma-70 region 3 RN84_03830 PF03979 Sigma-70 factor, region 1.1 RN84_03835 PF04542 Sigma-70 region 2 RN84_03835 PF04539 Sigma-70 region 3 RN84_03835 PF04545 Sigma-70, region 4 RN84_03835 PF00140 Sigma-70 factor, region 1.2 RN84_03840 PF01784 NIF3 (NGG1p interacting factor 3) RN84_03855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_03860 PF01618 MotA/TolQ/ExbB proton channel family RN84_03865 PF02472 Biopolymer transport protein ExbD/TolR RN84_03885 PF01066 CDP-alcohol phosphatidyltransferase RN84_03890 PF12146 Serine aminopeptidase, S33 RN84_03890 PF12147 Putative methyltransferase RN84_03900 PF00436 Single-strand binding protein family RN84_03905 PF01923 Cobalamin adenosyltransferase RN84_03915 PF12848 ABC transporter RN84_03915 PF00005 ABC transporter RN84_03930 PF00557 Metallopeptidase family M24 RN84_03975 PF01176 Translation initiation factor 1A / IF-1 RN84_03980 PF00444 Ribosomal protein L36 RN84_03985 PF00416 Ribosomal protein S13/S18 RN84_03990 PF00411 Ribosomal protein S11 RN84_03995 PF00163 Ribosomal protein S4/S9 N-terminal domain RN84_03995 PF01479 S4 domain RN84_04000 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RN84_04000 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RN84_04000 PF01000 RNA polymerase Rpb3/RpoA insert domain RN84_04005 PF01196 Ribosomal protein L17 RN84_04015 PF01223 DNA/RNA non-specific endonuclease RN84_04030 PF01546 Peptidase family M20/M25/M40 RN84_04030 PF07687 Peptidase dimerisation domain RN84_04040 PF00873 AcrB/AcrD/AcrF family RN84_04050 PF02321 Outer membrane efflux protein RN84_04060 PF01343 Peptidase family S49 RN84_04075 PF09334 tRNA synthetases class I (M) RN84_04075 PF00133 tRNA synthetases class I (I, L, M and V) RN84_04075 PF08264 Anticodon-binding domain of tRNA RN84_04075 PF01588 Putative tRNA binding domain RN84_04085 PF00483 Nucleotidyl transferase RN84_04090 PF00691 OmpA family RN84_04090 PF13488 Glycine zipper RN84_04100 PF06180 Cobalt chelatase (CbiK) RN84_04110 PF00486 Transcriptional regulatory protein, C terminal RN84_04110 PF00072 Response regulator receiver domain RN84_04115 PF00512 His Kinase A (phospho-acceptor) domain RN84_04115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_04115 PF00672 HAMP domain RN84_04120 PF03167 Uracil DNA glycosylase superfamily RN84_04125 PF03480 Bacterial extracellular solute-binding protein, family 7 RN84_04135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RN84_04140 PF13344 Haloacid dehalogenase-like hydrolase RN84_04145 PF00881 Nitroreductase family RN84_04155 PF10634 Fe2+ transport protein RN84_04160 PF03239 Iron permease FTR1 family RN84_04165 PF00860 Permease family RN84_04170 PF08279 HTH domain RN84_04170 PF13280 WYL domain RN84_04180 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RN84_04185 PF04991 LicD family RN84_04195 PF01522 Polysaccharide deacetylase RN84_04200 PF00535 Glycosyl transferase family 2 RN84_04200 PF02709 N-terminal domain of galactosyltransferase RN84_04230 PF12804 MobA-like NTP transferase domain RN84_04250 PF02525 Flavodoxin-like fold RN84_04255 PF01638 HxlR-like helix-turn-helix RN84_04260 PF00478 IMP dehydrogenase / GMP reductase domain RN84_04260 PF00571 CBS domain RN84_04280 PF03167 Uracil DNA glycosylase superfamily RN84_04285 PF02875 Mur ligase family, glutamate ligase domain RN84_04285 PF01225 Mur ligase family, catalytic domain RN84_04285 PF08245 Mur ligase middle domain RN84_04290 PF00793 DAHP synthetase I family RN84_04310 PF00291 Pyridoxal-phosphate dependent enzyme RN84_04320 PF04286 Protein of unknown function (DUF445) RN84_04325 PF17864 RuvB AAA lid domain RN84_04325 PF05491 RuvB C-terminal winged helix domain RN84_04325 PF05496 Holliday junction DNA helicase RuvB P-loop domain RN84_04330 PF02082 Transcriptional regulator RN84_04335 PF04452 RNA methyltransferase RN84_04340 PF04055 Radical SAM superfamily RN84_04340 PF01938 TRAM domain RN84_04340 PF00919 Uncharacterized protein family UPF0004 RN84_04355 PF03717 Penicillin-binding Protein dimerisation domain RN84_04355 PF00905 Penicillin binding protein transpeptidase domain RN84_04360 PF17770 Ribonuclease J C-terminal domain RN84_04360 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RN84_04360 PF00753 Metallo-beta-lactamase superfamily RN84_04365 PF01985 CRS1 / YhbY (CRM) domain RN84_04370 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RN84_04370 PF02779 Transketolase, pyrimidine binding domain RN84_04370 PF02780 Transketolase, C-terminal domain RN84_04380 PF01479 S4 domain RN84_04380 PF01728 FtsJ-like methyltransferase RN84_04385 PF17820 PDZ domain RN84_04385 PF01471 Putative peptidoglycan binding domain RN84_04385 PF03572 Peptidase family S41 RN84_04390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN84_04395 PF01926 50S ribosome-binding GTPase RN84_04400 PF02540 NAD synthase RN84_04415 PF11799 impB/mucB/samB family C-terminal domain RN84_04415 PF00817 impB/mucB/samB family RN84_04470 PF00497 Bacterial extracellular solute-binding proteins, family 3 RN84_04480 PF02146 Sir2 family RN84_04520 PF01867 CRISPR associated protein Cas1 RN84_04525 PF09827 CRISPR associated protein Cas2 RN84_04540 PF01515 Phosphate acetyl/butaryl transferase RN84_04545 PF00871 Acetokinase family RN84_04550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RN84_04550 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RN84_04550 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RN84_04550 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RN84_04550 PF10371 Domain of unknown function RN84_04555 PF00056 lactate/malate dehydrogenase, NAD binding domain RN84_04555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RN84_04565 PF02653 Branched-chain amino acid transport system / permease component RN84_04570 PF00005 ABC transporter RN84_04575 PF13407 Periplasmic binding protein domain RN84_04580 PF00480 ROK family RN84_04585 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN84_04590 PF00753 Metallo-beta-lactamase superfamily RN84_04595 PF01177 Asp/Glu/Hydantoin racemase RN84_04600 PF04434 SWIM zinc finger RN84_04600 PF00176 SNF2 family N-terminal domain RN84_04600 PF00271 Helicase conserved C-terminal domain RN84_04605 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RN84_04615 PF01327 Polypeptide deformylase RN84_04620 PF17764 3′ DNA-binding domain (3′BD) RN84_04620 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RN84_04620 PF18074 Primosomal protein N C-terminal domain RN84_04620 PF00271 Helicase conserved C-terminal domain RN84_04620 PF04851 Type III restriction enzyme, res subunit RN84_04625 PF00905 Penicillin binding protein transpeptidase domain RN84_04625 PF03717 Penicillin-binding Protein dimerisation domain RN84_04625 PF03793 PASTA domain RN84_04630 PF03631 Virulence factor BrkB RN84_04640 PF00155 Aminotransferase class I and II RN84_04645 PF01554 MatE RN84_04655 PF13361 UvrD-like helicase C-terminal domain RN84_04655 PF00580 UvrD/REP helicase N-terminal domain RN84_04665 PF03313 Serine dehydratase alpha chain RN84_04685 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RN84_04690 PF16199 Radical_SAM C-terminal domain RN84_04690 PF04055 Radical SAM superfamily RN84_04695 PF01226 Formate/nitrite transporter RN84_04705 PF01869 BadF/BadG/BcrA/BcrD ATPase family RN84_04715 PF00528 Binding-protein-dependent transport system inner membrane component RN84_04720 PF00005 ABC transporter RN84_04730 PF04074 YhcH/YjgK/YiaL RN84_04735 PF01979 Amidohydrolase family RN84_04740 PF01467 Cytidylyltransferase-like RN84_04750 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RN84_04755 PF06470 SMC proteins Flexible Hinge Domain RN84_04755 PF02463 RecF/RecN/SMC N terminal domain RN84_04760 PF00326 Prolyl oligopeptidase family RN84_04760 PF07676 WD40-like Beta Propeller Repeat RN84_04775 PF04011 LemA family RN84_04780 PF00223 Photosystem I psaA/psaB protein RN84_04780 PF00691 OmpA family RN84_04785 PF00578 AhpC/TSA family RN84_04790 PF00501 AMP-binding enzyme RN84_04795 PF08903 Domain of unknown function (DUF1846) RN84_04800 PF01293 Phosphoenolpyruvate carboxykinase RN84_04805 PF01016 Ribosomal L27 protein RN84_04815 PF00829 Ribosomal prokaryotic L21 protein RN84_04820 PF03575 Peptidase family S51 RN84_04825 PF03824 High-affinity nickel-transport protein RN84_04835 PF00528 Binding-protein-dependent transport system inner membrane component RN84_04840 PF00528 Binding-protein-dependent transport system inner membrane component RN84_04840 PF12911 N-terminal TM domain of oligopeptide transport permease C RN84_04845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_04850 PF00005 ABC transporter RN84_04850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_04855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_04855 PF00005 ABC transporter RN84_04870 PF03313 Serine dehydratase alpha chain RN84_04870 PF03315 Serine dehydratase beta chain RN84_04880 PF07499 RuvA, C-terminal domain RN84_04880 PF01330 RuvA N terminal domain RN84_04885 PF17760 UvrA interaction domain RN84_04885 PF17755 UvrA DNA-binding domain RN84_04890 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RN84_04935 PF07136 Protein of unknown function (DUF1385) RN84_04940 PF07228 Stage II sporulation protein E (SpoIIE) RN84_04940 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RN84_04945 PF08459 UvrC Helix-hairpin-helix N-terminal RN84_04945 PF02151 UvrB/uvrC motif RN84_04945 PF01541 GIY-YIG catalytic domain RN84_04950 PF03668 P-loop ATPase protein family RN84_04955 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN84_04955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN84_04995 PF00664 ABC transporter transmembrane region RN84_04995 PF00005 ABC transporter RN84_05025 PF02881 SRP54-type protein, helical bundle domain RN84_05025 PF00448 SRP54-type protein, GTPase domain RN84_05035 PF01926 50S ribosome-binding GTPase RN84_05040 PF02899 Phage integrase, N-terminal SAM-like domain RN84_05040 PF00589 Phage integrase family RN84_05045 PF01134 Glucose inhibited division protein A RN84_05050 PF01131 DNA topoisomerase RN84_05050 PF01396 Topoisomerase DNA binding C4 zinc finger RN84_05050 PF01751 Toprim domain RN84_05055 PF02481 DNA recombination-mediator protein A RN84_05055 PF17782 DprA winged helix domain RN84_05065 PF02601 Exonuclease VII, large subunit RN84_05065 PF13742 OB-fold nucleic acid binding domain RN84_05080 PF01546 Peptidase family M20/M25/M40 RN84_05080 PF07687 Peptidase dimerisation domain RN84_05100 PF05406 WGR domain RN84_05105 PF05525 Branched-chain amino acid transport protein RN84_05125 PF00291 Pyridoxal-phosphate dependent enzyme RN84_05155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RN84_05190 PF17783 CvfB-like winged helix domain RN84_05190 PF13509 S1 domain RN84_05200 PF05437 Branched-chain amino acid transport protein (AzlD) RN84_05205 PF03591 AzlC protein RN84_05230 PF02909 Tetracyclin repressor-like, C-terminal domain RN84_05230 PF00440 Bacterial regulatory proteins, tetR family RN84_05235 PF17785 PUA-like domain RN84_05235 PF10672 S-adenosylmethionine-dependent methyltransferase RN84_05255 PF00675 Insulinase (Peptidase family M16) RN84_05255 PF05193 Peptidase M16 inactive domain RN84_05260 PF00692 dUTPase RN84_05265 PF01098 Cell cycle protein RN84_05270 PF00849 RNA pseudouridylate synthase RN84_05270 PF01479 S4 domain RN84_05275 PF00860 Permease family RN84_05280 PF00216 Bacterial DNA-binding protein RN84_05290 PF00690 Cation transporter/ATPase, N-terminus RN84_05290 PF00689 Cation transporting ATPase, C-terminus RN84_05300 PF00378 Enoyl-CoA hydratase/isomerase RN84_05305 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RN84_05305 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RN84_05320 PF01048 Phosphorylase superfamily RN84_05325 PF02875 Mur ligase family, glutamate ligase domain RN84_05325 PF08245 Mur ligase middle domain RN84_05335 PF07475 HPr Serine kinase C-terminal domain RN84_05335 PF02603 HPr Serine kinase N terminus RN84_05340 PF02272 DHHA1 domain RN84_05340 PF01368 DHH family RN84_05345 PF04472 Cell division protein SepF RN84_05395 PF00202 Aminotransferase class-III RN84_05405 PF06968 Biotin and Thiamin Synthesis associated domain RN84_05405 PF04055 Radical SAM superfamily RN84_05410 PF05343 M42 glutamyl aminopeptidase RN84_05415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_05425 PF09529 Integral membrane protein (intg_mem_TP0381) RN84_05440 PF02386 Cation transport protein RN84_05450 PF01066 CDP-alcohol phosphatidyltransferase RN84_05455 PF00586 AIR synthase related protein, N-terminal domain RN84_05455 PF02769 AIR synthase related protein, C-terminal domain RN84_05455 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RN84_05460 PF00731 AIR carboxylase RN84_05465 PF01259 SAICAR synthetase RN84_05470 PF00156 Phosphoribosyl transferase domain RN84_05475 PF00586 AIR synthase related protein, N-terminal domain RN84_05475 PF02769 AIR synthase related protein, C-terminal domain RN84_05480 PF00551 Formyl transferase RN84_05495 PF02142 MGS-like domain RN84_05495 PF01808 AICARFT/IMPCHase bienzyme RN84_05500 PF02844 Phosphoribosylglycinamide synthetase, N domain RN84_05500 PF02843 Phosphoribosylglycinamide synthetase, C domain RN84_05500 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RN84_05515 PF03553 Na+/H+ antiporter family RN84_05530 PF03186 CobD/Cbib protein RN84_05535 PF00155 Aminotransferase class I and II RN84_05540 PF07685 CobB/CobQ-like glutamine amidotransferase domain RN84_05545 PF12728 Helix-turn-helix domain RN84_05545 PF02661 Fic/DOC family RN84_05550 PF02570 Precorrin-8X methylmutase RN84_05570 PF01888 CbiD RN84_05585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RN84_05585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RN84_05590 PF05175 Methyltransferase small domain RN84_05615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN84_05625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN84_05665 PF11760 Cobalamin synthesis G N-terminal RN84_05665 PF11761 Cobalamin biosynthesis central region RN84_05665 PF01890 Cobalamin synthesis G C-terminus RN84_05670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN84_05670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RN84_05675 PF02571 Precorrin-6x reductase CbiJ/CobK RN84_05680 PF13087 AAA domain RN84_05680 PF13086 AAA domain RN84_05680 PF13195 Protein of unknown function (DUF4011) RN84_05710 PF00072 Response regulator receiver domain RN84_05710 PF00486 Transcriptional regulatory protein, C terminal RN84_05715 PF02743 Cache domain RN84_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_05715 PF00512 His Kinase A (phospho-acceptor) domain RN84_05740 PF08245 Mur ligase middle domain RN84_05745 PF14102 Capsule biosynthesis CapC RN84_05755 PF01264 Chorismate synthase RN84_05760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RN84_05770 PF00293 NUDIX domain RN84_05775 PF01467 Cytidylyltransferase-like RN84_05775 PF00294 pfkB family carbohydrate kinase RN84_05780 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RN84_05785 PF00814 Glycoprotease family RN84_05810 PF13396 Phospholipase_D-nuclease N-terminal RN84_05810 PF13091 PLD-like domain RN84_05815 PF01636 Phosphotransferase enzyme family RN84_05825 PF01435 Peptidase family M48 RN84_05845 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RN84_05855 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RN84_05860 PF02654 Cobalamin-5-phosphate synthase RN84_05865 PF00300 Histidine phosphatase superfamily (branch 1) RN84_05870 PF02277 Phosphoribosyltransferase RN84_05875 PF04002 RadC-like JAB domain RN84_05880 PF04468 PSP1 C-terminal conserved region RN84_05885 PF13847 Methyltransferase domain RN84_05885 PF17827 PrmC N-terminal domain RN84_05890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RN84_05890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RN84_05910 PF00571 CBS domain RN84_05910 PF01380 SIS domain RN84_05915 PF01812 5-formyltetrahydrofolate cyclo-ligase family RN84_05925 PF00753 Metallo-beta-lactamase superfamily RN84_05985 PF00860 Permease family RN84_05990 PF01432 Peptidase family M3 RN84_05990 PF08439 Oligopeptidase F RN84_05995 PF07715 TonB-dependent Receptor Plug Domain RN84_05995 PF00593 TonB dependent receptor RN84_06005 PF01032 FecCD transport family RN84_06010 PF00005 ABC transporter RN84_06020 PF00005 ABC transporter RN84_06030 PF08032 RNA 2'-O ribose methyltransferase substrate binding RN84_06030 PF00588 SpoU rRNA Methylase family RN84_06035 PF00293 NUDIX domain RN84_06040 PF01343 Peptidase family S49 RN84_06050 PF01761 3-dehydroquinate synthase RN84_06050 PF02541 Ppx/GppA phosphatase family RN84_06065 PF01171 PP-loop family RN84_06070 PF00501 AMP-binding enzyme RN84_06070 PF13193 AMP-binding enzyme C-terminal domain RN84_06075 PF01027 Inhibitor of apoptosis-promoting Bax1 RN84_06110 PF02446 4-alpha-glucanotransferase RN84_06115 PF00343 Carbohydrate phosphorylase RN84_06120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RN84_06120 PF02806 Alpha amylase, C-terminal all-beta domain RN84_06120 PF00128 Alpha amylase, catalytic domain RN84_06125 PF00132 Bacterial transferase hexapeptide (six repeats) RN84_06125 PF00483 Nucleotidyl transferase RN84_06130 PF00483 Nucleotidyl transferase RN84_06135 PF08323 Starch synthase catalytic domain RN84_06135 PF00534 Glycosyl transferases group 1 RN84_06140 PF08241 Methyltransferase domain RN84_06150 PF00155 Aminotransferase class I and II RN84_06190 PF00589 Phage integrase family RN84_06190 PF02899 Phage integrase, N-terminal SAM-like domain RN84_06220 PF00593 TonB dependent receptor RN84_06220 PF07715 TonB-dependent Receptor Plug Domain RN84_06235 PF12704 MacB-like periplasmic core domain RN84_06235 PF02687 FtsX-like permease family RN84_06240 PF00005 ABC transporter RN84_06245 PF13533 Biotin-lipoyl like RN84_06260 PF16360 GTP-binding GTPase Middle Region RN84_06260 PF13167 GTP-binding GTPase N-terminal RN84_06260 PF01926 50S ribosome-binding GTPase RN84_06265 PF01202 Shikimate kinase RN84_06275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN84_06275 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN84_06285 PF00216 Bacterial DNA-binding protein RN84_06295 PF01575 MaoC like domain RN84_06305 PF01144 Coenzyme A transferase RN84_06310 PF08359 YsiA-like protein, C-terminal region RN84_06310 PF00440 Bacterial regulatory proteins, tetR family RN84_06320 PF01212 Beta-eliminating lyase RN84_06335 PF12161 HsdM N-terminal domain RN84_06335 PF02384 N-6 DNA Methylase RN84_06340 PF00588 SpoU rRNA Methylase family RN84_06345 PF00300 Histidine phosphatase superfamily (branch 1) RN84_06350 PF02348 Cytidylyltransferase RN84_06355 PF08486 Stage II sporulation protein RN84_06365 PF00005 ABC transporter RN84_06370 PF01032 FecCD transport family RN84_06375 PF03358 NADPH-dependent FMN reductase RN84_06375 PF04205 FMN-binding domain RN84_06375 PF00890 FAD binding domain RN84_06380 PF01980 tRNA-methyltransferase O RN84_06385 PF00005 ABC transporter RN84_06395 PF02553 Cobalt transport protein component CbiN RN84_06400 PF01891 Cobalt uptake substrate-specific transmembrane region RN84_06405 PF02683 Cytochrome C biogenesis protein transmembrane region RN84_06410 PF01641 SelR domain RN84_06410 PF01625 Peptide methionine sulfoxide reductase RN84_06410 PF08534 Redoxin RN84_06415 PF00528 Binding-protein-dependent transport system inner membrane component RN84_06420 PF00005 ABC transporter RN84_06425 PF00497 Bacterial extracellular solute-binding proteins, family 3 RN84_06430 PF00128 Alpha amylase, catalytic domain RN84_06430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RN84_06435 PF06874 Firmicute fructose-1,6-bisphosphatase RN84_06445 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RN84_06445 PF02896 PEP-utilising enzyme, TIM barrel domain RN84_06445 PF00391 PEP-utilising enzyme, mobile domain RN84_06450 PF00571 CBS domain RN84_06450 PF08279 HTH domain RN84_06460 PF03616 Sodium/glutamate symporter RN84_06465 PF01175 Urocanase Rossmann-like domain RN84_06465 PF17391 Urocanase N-terminal domain RN84_06465 PF17392 Urocanase C-terminal domain RN84_06470 PF00221 Aromatic amino acid lyase RN84_06475 PF00480 ROK family RN84_06480 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RN84_06480 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RN84_06490 PF01012 Electron transfer flavoprotein domain RN84_06490 PF00766 Electron transfer flavoprotein FAD-binding domain RN84_06495 PF01012 Electron transfer flavoprotein domain RN84_06500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RN84_06500 PF02770 Acyl-CoA dehydrogenase, middle domain RN84_06500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RN84_06510 PF06738 Putative threonine/serine exporter RN84_06520 PF07683 Cobalamin synthesis protein cobW C-terminal domain RN84_06520 PF02492 CobW/HypB/UreG, nucleotide-binding domain RN84_06530 PF00679 Elongation factor G C-terminus RN84_06530 PF00009 Elongation factor Tu GTP binding domain RN84_06530 PF03144 Elongation factor Tu domain 2 RN84_06530 PF06421 GTP-binding protein LepA C-terminus RN84_06535 PF03590 Aspartate-ammonia ligase RN84_06540 PF02127 Aminopeptidase I zinc metalloprotease (M18) RN84_06560 PF04055 Radical SAM superfamily RN84_06565 PF00005 ABC transporter RN84_06570 PF01032 FecCD transport family RN84_06575 PF00593 TonB dependent receptor RN84_06575 PF07715 TonB-dependent Receptor Plug Domain RN84_06580 PF01497 Periplasmic binding protein RN84_06585 PF01741 Large-conductance mechanosensitive channel, MscL RN84_06605 PF03309 Type III pantothenate kinase RN84_06625 PF04079 Segregation and condensation complex subunit ScpB RN84_06630 PF00849 RNA pseudouridylate synthase RN84_06630 PF01479 S4 domain RN84_06635 PF02686 Glu-tRNAGln amidotransferase C subunit RN84_06640 PF01425 Amidase RN84_06645 PF02637 GatB domain RN84_06645 PF02934 GatB/GatE catalytic domain RN84_06650 PF00561 alpha/beta hydrolase fold RN84_06655 PF00710 Asparaginase, N-terminal RN84_06655 PF17763 Glutaminase/Asparaginase C-terminal domain RN84_06675 PF00293 NUDIX domain RN84_06695 PF02130 Uncharacterized protein family UPF0054 RN84_06700 PF07698 7TM receptor with intracellular HD hydrolase RN84_06700 PF07697 7TM-HD extracellular RN84_06700 PF01966 HD domain RN84_06710 PF06733 DEAD_2 RN84_06710 PF13307 Helicase C-terminal domain RN84_06715 PF07308 Protein of unknown function (DUF1456) RN84_06720 PF02971 Formiminotransferase domain RN84_06720 PF07837 Formiminotransferase domain, N-terminal subdomain RN84_06725 PF01979 Amidohydrolase family RN84_06730 PF04961 Formiminotransferase-cyclodeaminase RN84_06750 PF05662 Coiled stalk of trimeric autotransporter adhesin RN84_06750 PF05658 Head domain of trimeric autotransporter adhesin RN84_06750 PF03895 YadA-like membrane anchor domain RN84_06750 PF13018 Extended Signal Peptide of Type V secretion system RN84_06755 PF04055 Radical SAM superfamily RN84_06755 PF08497 Radical SAM N-terminal RN84_06760 PF01546 Peptidase family M20/M25/M40 RN84_06760 PF07687 Peptidase dimerisation domain RN84_06765 PF05636 HIGH Nucleotidyl Transferase RN84_06775 PF00300 Histidine phosphatase superfamily (branch 1) RN84_06780 PF00300 Histidine phosphatase superfamily (branch 1) RN84_06785 PF02661 Fic/DOC family RN84_06785 PF12728 Helix-turn-helix domain RN84_06800 PF02661 Fic/DOC family RN84_06800 PF13784 Fic/DOC family N-terminal RN84_06805 PF00899 ThiF family RN84_06810 PF00258 Flavodoxin RN84_06830 PF01132 Elongation factor P (EF-P) OB domain RN84_06830 PF08207 Elongation factor P (EF-P) KOW-like domain RN84_06830 PF09285 Elongation factor P, C-terminal RN84_06845 PF00849 RNA pseudouridylate synthase RN84_06845 PF01479 S4 domain RN84_06875 PF02441 Flavoprotein RN84_06875 PF04127 DNA / pantothenate metabolism flavoprotein RN84_06885 PF03023 Lipid II flippase MurJ RN84_06890 PF02616 Segregation and condensation protein ScpA RN84_06895 PF06574 FAD synthetase RN84_06895 PF01687 Riboflavin kinase RN84_06900 PF14527 WhiA LAGLIDADG-like domain RN84_06900 PF10298 WhiA N-terminal LAGLIDADG-like domain RN84_06900 PF02650 WhiA C-terminal HTH domain RN84_06905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RN84_06905 PF01367 5'-3' exonuclease, C-terminal SAM fold RN84_06905 PF00476 DNA polymerase family A RN84_06920 PF10119 Predicted methyltransferase regulatory domain RN84_06920 PF13847 Methyltransferase domain RN84_06925 PF07549 SecD/SecF GG Motif RN84_06925 PF02355 Protein export membrane protein RN84_06930 PF02355 Protein export membrane protein RN84_06930 PF07549 SecD/SecF GG Motif RN84_06935 PF03652 Holliday junction resolvase RN84_06940 PF02272 DHHA1 domain RN84_06940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RN84_06940 PF01411 tRNA synthetases class II (A) RN84_06950 PF12399 Branched-chain amino acid ATP-binding cassette transporter RN84_06950 PF00005 ABC transporter RN84_06960 PF01624 MutS domain I RN84_06960 PF05190 MutS family domain IV RN84_06960 PF00488 MutS domain V RN84_06960 PF05192 MutS domain III RN84_06960 PF05188 MutS domain II RN84_06965 PF01207 Dihydrouridine synthase (Dus) RN84_07000 PF00474 Sodium:solute symporter family RN84_07005 PF03063 Prismane/CO dehydrogenase family RN84_07025 PF00834 Ribulose-phosphate 3 epimerase family RN84_07030 PF03193 RsgA GTPase RN84_07030 PF16745 RsgA N-terminal domain RN84_07035 PF03793 PASTA domain RN84_07035 PF00069 Protein kinase domain RN84_07045 PF00166 Chaperonin 10 Kd subunit RN84_07050 PF00118 TCP-1/cpn60 chaperonin family RN84_07060 PF04073 Aminoacyl-tRNA editing domain RN84_07065 PF13635 Domain of unknown function (DUF4143) RN84_07065 PF13173 AAA domain RN84_07070 PF00950 ABC 3 transport family RN84_07075 PF00950 ABC 3 transport family RN84_07080 PF00005 ABC transporter RN84_07085 PF01297 Zinc-uptake complex component A periplasmic RN84_07115 PF03060 Nitronate monooxygenase RN84_07125 PF00491 Arginase family RN84_07135 PF00005 ABC transporter RN84_07135 PF09383 NIL domain RN84_07140 PF00528 Binding-protein-dependent transport system inner membrane component RN84_07145 PF03180 NLPA lipoprotein RN84_07165 PF00162 Phosphoglycerate kinase RN84_07175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RN84_07175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RN84_07180 PF00849 RNA pseudouridylate synthase RN84_07190 PF07969 Amidohydrolase family RN84_07195 PF07969 Amidohydrolase family RN84_07205 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RN84_07205 PF01488 Shikimate / quinate 5-dehydrogenase RN84_07210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RN84_07210 PF03900 Porphobilinogen deaminase, C-terminal domain RN84_07260 PF01509 TruB family pseudouridylate synthase (N terminal domain) RN84_07260 PF16198 tRNA pseudouridylate synthase B C-terminal domain RN84_07280 PF03830 PTS system sorbose subfamily IIB component RN84_07285 PF03609 PTS system sorbose-specific iic component RN84_07290 PF03613 PTS system mannose/fructose/sorbose family IID component RN84_07295 PF01380 SIS domain RN84_07300 PF01380 SIS domain RN84_07310 PF00155 Aminotransferase class I and II RN84_07315 PF03553 Na+/H+ antiporter family RN84_07330 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RN84_07330 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RN84_07340 PF05552 Conserved TM helix RN84_07340 PF00924 Mechanosensitive ion channel RN84_07345 PF13416 Bacterial extracellular solute-binding protein RN84_07350 PF02767 DNA polymerase III beta subunit, central domain RN84_07350 PF02768 DNA polymerase III beta subunit, C-terminal domain RN84_07350 PF00712 DNA polymerase III beta subunit, N-terminal domain RN84_07360 PF00005 ABC transporter RN84_07360 PF00664 ABC transporter transmembrane region RN84_07365 PF04954 Siderophore-interacting protein RN84_07365 PF08021 Siderophore-interacting FAD-binding domain RN84_07365 PF00005 ABC transporter RN84_07365 PF00664 ABC transporter transmembrane region RN84_07380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RN84_07380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RN84_07380 PF02824 TGS domain RN84_07380 PF03129 Anticodon binding domain RN84_07390 PF01668 SmpB protein RN84_07395 PF00773 RNB domain RN84_07395 PF08206 Ribonuclease B OB domain RN84_07395 PF00575 S1 RNA binding domain RN84_07395 PF17876 Cold shock domain RN84_07400 PF01966 HD domain RN84_07410 PF00155 Aminotransferase class I and II RN84_07415 PF00375 Sodium:dicarboxylate symporter family RN84_07420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RN84_07420 PF03466 LysR substrate binding domain RN84_07450 PF00664 ABC transporter transmembrane region RN84_07450 PF00005 ABC transporter RN84_07455 PF02684 Lipid-A-disaccharide synthetase RN84_07465 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RN84_07465 PF00132 Bacterial transferase hexapeptide (six repeats) RN84_07470 PF07977 FabA-like domain RN84_07475 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RN84_07480 PF13361 UvrD-like helicase C-terminal domain RN84_07480 PF00580 UvrD/REP helicase N-terminal domain RN84_07485 PF03806 AbgT putative transporter family RN84_07490 PF01546 Peptidase family M20/M25/M40 RN84_07490 PF07687 Peptidase dimerisation domain RN84_07495 PF01638 HxlR-like helix-turn-helix RN84_07510 PF00672 HAMP domain RN84_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_07510 PF00512 His Kinase A (phospho-acceptor) domain RN84_07515 PF00486 Transcriptional regulatory protein, C terminal RN84_07515 PF00072 Response regulator receiver domain RN84_07530 PF00005 ABC transporter RN84_07535 PF02687 FtsX-like permease family RN84_07535 PF12704 MacB-like periplasmic core domain RN84_07540 PF00905 Penicillin binding protein transpeptidase domain RN84_07540 PF06832 Penicillin-Binding Protein C-terminus Family RN84_07540 PF00912 Transglycosylase RN84_07555 PF00270 DEAD/DEAH box helicase RN84_07555 PF09382 RQC domain RN84_07555 PF00271 Helicase conserved C-terminal domain RN84_07555 PF16124 RecQ zinc-binding RN84_07555 PF00570 HRDC domain RN84_07565 PF00092 von Willebrand factor type A domain RN84_07580 PF02481 DNA recombination-mediator protein A RN84_07580 PF17782 DprA winged helix domain RN84_07610 PF04472 Cell division protein SepF RN84_07615 PF01168 Alanine racemase, N-terminal domain RN84_07620 PF04055 Radical SAM superfamily RN84_07620 PF06969 HemN C-terminal domain RN84_07625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RN84_07625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RN84_07625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RN84_07625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RN84_07630 PF05818 Enterobacterial TraT complement resistance protein RN84_07655 PF02447 GntP family permease RN84_07660 PF00291 Pyridoxal-phosphate dependent enzyme RN84_07680 PF00814 Glycoprotease family RN84_07685 PF02631 RecX family RN84_07690 PF00154 recA bacterial DNA recombination protein RN84_07705 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RN84_07715 PF00535 Glycosyl transferase family 2 RN84_07720 PF01522 Polysaccharide deacetylase RN84_07725 PF00202 Aminotransferase class-III RN84_07730 PF10414 Sirohaem synthase dimerisation region RN84_07730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RN84_07730 PF14824 Sirohaem biosynthesis protein central RN84_07740 PF02660 Glycerol-3-phosphate acyltransferase RN84_07745 PF00712 DNA polymerase III beta subunit, N-terminal domain RN84_07745 PF02768 DNA polymerase III beta subunit, C-terminal domain RN84_07750 PF03641 Possible lysine decarboxylase RN84_07760 PF03601 Conserved hypothetical protein 698 RN84_07780 PF00258 Flavodoxin RN84_07780 PF00753 Metallo-beta-lactamase superfamily RN84_07785 PF00258 Flavodoxin RN84_07795 PF00873 AcrB/AcrD/AcrF family RN84_07825 PF02677 Epoxyqueuosine reductase QueH RN84_07830 PF02463 RecF/RecN/SMC N terminal domain RN84_07840 PF13361 UvrD-like helicase C-terminal domain RN84_07840 PF00580 UvrD/REP helicase N-terminal domain RN84_07845 PF00912 Transglycosylase RN84_07845 PF00905 Penicillin binding protein transpeptidase domain RN84_07850 PF04055 Radical SAM superfamily RN84_07855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RN84_07855 PF01411 tRNA synthetases class II (A) RN84_07855 PF02272 DHHA1 domain RN84_07860 PF00313 'Cold-shock' DNA-binding domain RN84_07870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RN84_07870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RN84_07875 PF01734 Patatin-like phospholipase RN84_07885 PF03485 Arginyl tRNA synthetase N terminal domain RN84_07885 PF05746 DALR anticodon binding domain RN84_07885 PF00750 tRNA synthetases class I (R) RN84_07890 PF07722 Peptidase C26 RN84_07895 PF13520 Amino acid permease RN84_07900 PF03466 LysR substrate binding domain RN84_07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RN84_07905 PF13580 SIS domain RN84_07920 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RN84_07920 PF01276 Orn/Lys/Arg decarboxylase, major domain RN84_07925 PF03537 Glycoside-hydrolase family GH114 RN84_07930 PF07715 TonB-dependent Receptor Plug Domain RN84_07930 PF00593 TonB dependent receptor RN84_07945 PF00108 Thiolase, N-terminal domain RN84_07945 PF02803 Thiolase, C-terminal domain RN84_07965 PF00842 Alanine racemase, C-terminal domain RN84_07965 PF01168 Alanine racemase, N-terminal domain RN84_07975 PF01790 Prolipoprotein diacylglyceryl transferase RN84_07980 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RN84_07980 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RN84_07985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RN84_07985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RN84_08000 PF01197 Ribosomal protein L31 RN84_08020 PF04551 GcpE protein RN84_08025 PF04225 Opacity-associated protein A LysM-like domain RN84_08025 PF01551 Peptidase family M23 RN84_08030 PF07497 Rho termination factor, RNA-binding domain RN84_08030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN84_08035 PF04055 Radical SAM superfamily RN84_08035 PF00919 Uncharacterized protein family UPF0004 RN84_08035 PF01938 TRAM domain RN84_08040 PF00873 AcrB/AcrD/AcrF family RN84_08045 PF17932 Tetracyclin repressor-like, C-terminal domain RN84_08045 PF00440 Bacterial regulatory proteins, tetR family RN84_08050 PF00258 Flavodoxin RN84_08055 PF05662 Coiled stalk of trimeric autotransporter adhesin RN84_08055 PF05658 Head domain of trimeric autotransporter adhesin RN84_08055 PF03895 YadA-like membrane anchor domain RN84_08060 PF03806 AbgT putative transporter family RN84_08065 PF03932 CutC family RN84_08070 PF04172 LrgB-like family RN84_08080 PF01336 OB-fold nucleic acid binding domain RN84_08080 PF00152 tRNA synthetases class II (D, K and N) RN84_08095 PF02590 Predicted SPOUT methyltransferase RN84_08100 PF08676 MutL C terminal dimerisation domain RN84_08100 PF01119 DNA mismatch repair protein, C-terminal domain RN84_08105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RN84_08105 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RN84_08110 PF00490 Delta-aminolevulinic acid dehydratase RN84_08135 PF02915 Rubrerythrin RN84_08140 PF00171 Aldehyde dehydrogenase family RN84_08145 PF00557 Metallopeptidase family M24 RN84_08145 PF01321 Creatinase/Prolidase N-terminal domain RN84_08150 PF01380 SIS domain RN84_08170 PF03746 LamB/YcsF family RN84_08175 PF01566 Natural resistance-associated macrophage protein RN84_08180 PF02682 Carboxyltransferase domain, subdomain C and D RN84_08185 PF02626 Carboxyltransferase domain, subdomain A and B RN84_08190 PF01048 Phosphorylase superfamily RN84_08215 PF01048 Phosphorylase superfamily RN84_08220 PF02626 Carboxyltransferase domain, subdomain A and B RN84_08225 PF02682 Carboxyltransferase domain, subdomain C and D RN84_08230 PF01566 Natural resistance-associated macrophage protein RN84_08240 PF01245 Ribosomal protein L19 RN84_08250 PF02811 PHP domain RN84_08255 PF00156 Phosphoribosyl transferase domain RN84_08260 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RN84_08270 PF01180 Dihydroorotate dehydrogenase RN84_08275 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RN84_08275 PF00175 Oxidoreductase NAD-binding domain RN84_08285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RN84_08285 PF02142 MGS-like domain RN84_08285 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RN84_08290 PF00117 Glutamine amidotransferase class-I RN84_08290 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RN84_08295 PF01979 Amidohydrolase family RN84_08300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RN84_08300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RN84_08305 PF00156 Phosphoribosyl transferase domain RN84_08310 PF08774 VRR-NUC domain RN84_08310 PF04851 Type III restriction enzyme, res subunit RN84_08320 PF17761 DUF1016 N-terminal domain RN84_08320 PF06250 YhcG PDDEXK nuclease domain RN84_08335 PF01555 DNA methylase RN84_08335 PF18273 Type III R-M EcoP15I C-terminal domain RN84_08355 PF02132 RecR protein RN84_08355 PF13662 Toprim domain RN84_08360 PF04363 Protein of unknown function (DUF496) RN84_08365 PF00365 Phosphofructokinase RN84_08370 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RN84_08375 PF01039 Carboxyl transferase domain RN84_08385 PF01168 Alanine racemase, N-terminal domain RN84_08385 PF00842 Alanine racemase, C-terminal domain RN84_08390 PF00579 tRNA synthetases class I (W and Y) RN84_08415 PF00005 ABC transporter RN84_08415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_08420 PF00005 ABC transporter RN84_08420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_08435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_08450 PF01522 Polysaccharide deacetylase RN84_08475 PF04072 Leucine carboxyl methyltransferase RN84_08485 PF03537 Glycoside-hydrolase family GH114 RN84_08500 PF13439 Glycosyltransferase Family 4 RN84_08500 PF00534 Glycosyl transferases group 1 RN84_08520 PF16363 GDP-mannose 4,6 dehydratase RN84_08525 PF00528 Binding-protein-dependent transport system inner membrane component RN84_08530 PF00005 ABC transporter RN84_08530 PF08402 TOBE domain RN84_08540 PF01368 DHH family RN84_08540 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RN84_08540 PF17768 RecJ OB domain RN84_08540 PF02272 DHHA1 domain RN84_08555 PF10502 Signal peptidase, peptidase S26 RN84_08565 PF00206 Lyase RN84_08565 PF10397 Adenylosuccinate lyase C-terminus RN84_08575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RN84_08575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RN84_08575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RN84_08575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RN84_08585 PF00119 ATP synthase A chain RN84_08590 PF00137 ATP synthase subunit C RN84_08595 PF00430 ATP synthase B/B' CF(0) RN84_08600 PF00213 ATP synthase delta (OSCP) subunit RN84_08605 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN84_08605 PF00306 ATP synthase alpha/beta chain, C terminal domain RN84_08605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN84_08610 PF00231 ATP synthase RN84_08615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RN84_08615 PF02874 ATP synthase alpha/beta family, beta-barrel domain RN84_08620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RN84_08625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RN84_08630 PF00438 S-adenosylmethionine synthetase, N-terminal domain RN84_08630 PF02772 S-adenosylmethionine synthetase, central domain RN84_08630 PF02773 S-adenosylmethionine synthetase, C-terminal domain RN84_08665 PF02580 D-Tyr-tRNA(Tyr) deacylase RN84_08670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RN84_08670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RN84_08670 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RN84_08675 PF02666 Phosphatidylserine decarboxylase RN84_08685 PF01594 AI-2E family transporter RN84_08690 PF01170 Putative RNA methylase family UPF0020 RN84_08690 PF02926 THUMP domain RN84_08700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RN84_08705 PF13726 Na+-H+ antiporter family RN84_08705 PF03553 Na+/H+ antiporter family RN84_08735 PF00691 OmpA family RN84_08745 PF04309 Glycerol-3-phosphate responsive antiterminator RN84_08750 PF01544 CorA-like Mg2+ transporter protein RN84_08760 PF00380 Ribosomal protein S9/S16 RN84_08765 PF00572 Ribosomal protein L13 RN84_08770 PF01235 Sodium:alanine symporter family RN84_08775 PF00707 Translation initiation factor IF-3, C-terminal domain RN84_08775 PF05198 Translation initiation factor IF-3, N-terminal domain RN84_08780 PF01632 Ribosomal protein L35 RN84_08785 PF00453 Ribosomal protein L20 RN84_08800 PF00274 Fructose-bisphosphate aldolase class-I RN84_08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_08805 PF00183 Hsp90 protein RN84_08815 PF08218 Citrate lyase ligase C-terminal domain RN84_08820 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase RN84_08825 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RN84_08850 PF03781 Sulfatase-modifying factor enzyme 1 RN84_08865 PF00291 Pyridoxal-phosphate dependent enzyme RN84_08870 PF12833 Helix-turn-helix domain RN84_08870 PF06445 GyrI-like small molecule binding domain RN84_08880 PF01029 NusB family RN84_08880 PF01189 16S rRNA methyltransferase RsmB/F RN84_08890 PF03477 ATP cone domain RN84_08890 PF13597 Anaerobic ribonucleoside-triphosphate reductase RN84_08895 PF00005 ABC transporter RN84_08895 PF17912 MalK OB fold domain RN84_08900 PF00528 Binding-protein-dependent transport system inner membrane component RN84_08930 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RN84_08935 PF00005 ABC transporter RN84_08940 PF01032 FecCD transport family RN84_08945 PF01497 Periplasmic binding protein RN84_08950 PF01336 OB-fold nucleic acid binding domain RN84_08950 PF00152 tRNA synthetases class II (D, K and N) RN84_08950 PF02938 GAD domain RN84_08955 PF13393 Histidyl-tRNA synthetase RN84_08955 PF03129 Anticodon binding domain RN84_08960 PF12002 MgsA AAA+ ATPase C terminal RN84_08960 PF00004 ATPase family associated with various cellular activities (AAA) RN84_08960 PF16193 AAA C-terminal domain RN84_08980 PF02780 Transketolase, C-terminal domain RN84_08980 PF02779 Transketolase, pyrimidine binding domain RN84_08985 PF00456 Transketolase, thiamine diphosphate binding domain RN84_09000 PF00398 Ribosomal RNA adenine dimethylase RN84_09015 PF05239 PRC-barrel domain RN84_09015 PF01782 RimM N-terminal domain RN84_09020 PF01746 tRNA (Guanine-1)-methyltransferase RN84_09025 PF09936 SAM-dependent RNA methyltransferase RN84_09030 PF00929 Exonuclease RN84_09030 PF02811 PHP domain RN84_09030 PF07733 Bacterial DNA polymerase III alpha NTPase domain RN84_09030 PF11490 DNA polymerase III polC-type N-terminus II RN84_09030 PF14579 Helix-hairpin-helix motif RN84_09030 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RN84_09040 PF04333 MlaA lipoprotein RN84_09045 PF01546 Peptidase family M20/M25/M40 RN84_09055 PF02690 Na+/Pi-cotransporter RN84_09065 PF01144 Coenzyme A transferase RN84_09070 PF01144 Coenzyme A transferase RN84_09075 PF00378 Enoyl-CoA hydratase/isomerase RN84_09080 PF01926 50S ribosome-binding GTPase RN84_09080 PF07650 KH domain RN84_09085 PF00589 Phage integrase family RN84_09085 PF02899 Phage integrase, N-terminal SAM-like domain RN84_09090 PF02463 RecF/RecN/SMC N terminal domain RN84_09095 PF01513 ATP-NAD kinase RN84_09120 PF01228 Glycine radical RN84_09120 PF02901 Pyruvate formate lyase-like RN84_09125 PF04055 Radical SAM superfamily RN84_09130 PF01022 Bacterial regulatory protein, arsR family RN84_09140 PF00403 Heavy-metal-associated domain RN84_09145 PF03606 C4-dicarboxylate anaerobic carrier RN84_09160 PF00691 OmpA family RN84_09210 PF00403 Heavy-metal-associated domain RN84_09215 PF00403 Heavy-metal-associated domain RN84_09225 PF13735 tRNA nucleotidyltransferase domain 2 putative RN84_09225 PF12627 Probable RNA and SrmB- binding site of polymerase A RN84_09225 PF01743 Poly A polymerase head domain RN84_09230 PF02080 TrkA-C domain RN84_09230 PF02254 TrkA-N domain RN84_09240 PF00303 Thymidylate synthase RN84_09255 PF00528 Binding-protein-dependent transport system inner membrane component RN84_09260 PF09084 NMT1/THI5 like RN84_09265 PF00005 ABC transporter RN84_09290 PF00455 DeoR C terminal sensor domain RN84_09290 PF08220 DeoR-like helix-turn-helix domain RN84_09295 PF07005 Sugar-binding N-terminal domain RN84_09295 PF17042 Nucleotide-binding C-terminal domain RN84_09300 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RN84_09305 PF02447 GntP family permease RN84_09310 PF12344 Ultra-violet resistance protein B RN84_09310 PF17757 UvrB interaction domain RN84_09310 PF04851 Type III restriction enzyme, res subunit RN84_09310 PF00271 Helicase conserved C-terminal domain RN84_09310 PF02151 UvrB/uvrC motif RN84_09325 PF02554 Carbon starvation protein CstA RN84_09330 PF07694 5TMR of 5TMR-LYT RN84_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_09330 PF06580 Histidine kinase RN84_09335 PF00072 Response regulator receiver domain RN84_09335 PF04397 LytTr DNA-binding domain RN84_09340 PF07722 Peptidase C26 RN84_09350 PF00106 short chain dehydrogenase RN84_09355 PF02308 MgtC family RN84_09360 PF02075 Crossover junction endodeoxyribonuclease RuvC RN84_09390 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RN84_09395 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RN84_09400 PF01869 BadF/BadG/BcrA/BcrD ATPase family RN84_09405 PF03616 Sodium/glutamate symporter RN84_09410 PF01039 Carboxyl transferase domain RN84_09415 PF01144 Coenzyme A transferase RN84_09420 PF01144 Coenzyme A transferase RN84_09425 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit RN84_09430 PF02436 Conserved carboxylase domain RN84_09430 PF00682 HMGL-like RN84_09430 PF00364 Biotin-requiring enzyme RN84_09455 PF00005 ABC transporter RN84_09455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RN84_09460 PF12911 N-terminal TM domain of oligopeptide transport permease C RN84_09460 PF00528 Binding-protein-dependent transport system inner membrane component RN84_09465 PF00528 Binding-protein-dependent transport system inner membrane component RN84_09470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RN84_09480 PF06580 Histidine kinase RN84_09480 PF00672 HAMP domain RN84_09480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RN84_09480 PF02743 Cache domain RN84_09490 PF01625 Peptide methionine sulfoxide reductase RN84_09490 PF01641 SelR domain RN84_09495 PF08534 Redoxin RN84_09500 PF02683 Cytochrome C biogenesis protein transmembrane region RN84_09520 PF06039 Malate:quinone oxidoreductase (Mqo) RN84_09525 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN84_09525 PF04324 BFD-like [2Fe-2S] binding domain RN84_09550 PF03776 Septum formation topological specificity factor MinE RN84_09555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RN84_09560 PF03775 Septum formation inhibitor MinC, C-terminal domain RN84_09565 PF03060 Nitronate monooxygenase RN84_09590 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RN84_09590 PF01926 50S ribosome-binding GTPase RN84_09620 PF01510 N-acetylmuramoyl-L-alanine amidase RN84_09625 PF02965 Vitamin B12 dependent methionine synthase, activation domain RN84_09625 PF02310 B12 binding domain RN84_09625 PF00809 Pterin binding enzyme RN84_09625 PF02574 Homocysteine S-methyltransferase RN84_09625 PF02607 B12 binding domain RN84_09630 PF01554 MatE RN84_09635 PF10635 DisA bacterial checkpoint controller linker region RN84_09635 PF02457 DisA bacterial checkpoint controller nucleotide-binding RN84_09640 PF18073 Rubredoxin metal binding domain RN84_09645 PF01467 Cytidylyltransferase-like RN84_09660 PF04055 Radical SAM superfamily RN84_09660 PF16199 Radical_SAM C-terminal domain RN84_09665 PF00035 Double-stranded RNA binding motif RN84_09665 PF14622 Ribonuclease-III-like RN84_09670 PF00109 Beta-ketoacyl synthase, N-terminal domain RN84_09670 PF02801 Beta-ketoacyl synthase, C-terminal domain RN84_09675 PF00550 Phosphopantetheine attachment site RN84_09680 PF00698 Acyl transferase domain RN84_09685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RN84_09685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RN84_09690 PF02504 Fatty acid synthesis protein RN84_09710 PF08479 POTRA domain, ShlB-type RN84_09710 PF17287 POTRA domain RN84_09710 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RN84_09715 PF00005 ABC transporter RN84_09715 PF00664 ABC transporter transmembrane region RN84_09720 PF00664 ABC transporter transmembrane region RN84_09720 PF00005 ABC transporter RN84_09735 PF01368 DHH family RN84_09735 PF00571 CBS domain RN84_09735 PF02833 DHHA2 domain RN84_09735 PF07085 DRTGG domain RN84_09750 PF03796 DnaB-like helicase C terminal domain RN84_09750 PF00772 DnaB-like helicase N terminal domain RN84_09755 PF03948 Ribosomal protein L9, C-terminal domain RN84_09755 PF01281 Ribosomal protein L9, N-terminal domain RN84_09765 PF12169 DNA polymerase III subunits gamma and tau domain III RN84_09770 PF02954 Bacterial regulatory protein, Fis family RN84_09770 PF00072 Response regulator receiver domain RN84_09770 PF00158 Sigma-54 interaction domain RN84_09780 PF02472 Biopolymer transport protein ExbD/TolR RN84_09785 PF01618 MotA/TolQ/ExbB proton channel family RN84_09805 PF00230 Major intrinsic protein RN84_09810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RN84_09810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RN84_09815 PF02733 Dak1 domain RN84_09820 PF02734 DAK2 domain RN84_09825 PF00391 PEP-utilising enzyme, mobile domain RN84_09825 PF05524 PEP-utilising enzyme, N-terminal RN84_09825 PF03610 PTS system fructose IIA component RN84_09825 PF00381 PTS HPr component phosphorylation site RN84_09835 PF00106 short chain dehydrogenase RN84_09850 PF01370 NAD dependent epimerase/dehydratase family RN84_09865 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RN84_09865 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RN84_09870 PF01138 3' exoribonuclease family, domain 1 RN84_09870 PF03725 3' exoribonuclease family, domain 2 RN84_09880 PF02310 B12 binding domain RN84_09885 PF13941 MutL protein RN84_09890 PF06368 Methylaspartate mutase E chain (MutE) RN84_09895 PF01144 Coenzyme A transferase RN84_09900 PF01144 Coenzyme A transferase RN84_09905 PF02667 Short chain fatty acid transporter RN84_09915 PF03553 Na+/H+ antiporter family RN84_09925 PF02310 B12 binding domain RN84_09925 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase RN84_09930 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit RN84_09935 PF05188 MutS domain II RN84_09935 PF05192 MutS domain III RN84_09935 PF05190 MutS family domain IV RN84_09935 PF01624 MutS domain I RN84_09935 PF00488 MutS domain V RN84_09945 PF04055 Radical SAM superfamily RN84_09945 PF12544 Lysine-2,3-aminomutase RN84_09955 PF05853 beta-keto acid cleavage enzyme RN84_09960 PF03061 Thioesterase superfamily RN84_09985 PF17191 RecG wedge domain RN84_09985 PF00270 DEAD/DEAH box helicase RN84_09985 PF13749 Putative ATP-dependent DNA helicase recG C-terminal RN84_10000 PF01230 HIT domain RN84_10005 PF02502 Ribose/Galactose Isomerase RN84_10010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RN84_10015 PF06418 CTP synthase N-terminus RN84_10015 PF00117 Glutamine amidotransferase class-I RN84_10020 PF00860 Permease family RN84_10030 PF01649 Ribosomal protein S20 RN84_10050 PF03006 Haemolysin-III related RN84_10070 PF03009 Glycerophosphoryl diester phosphodiesterase family RN84_10080 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RN84_10100 PF00005 ABC transporter RN84_10125 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN84_10125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RN84_10130 PF01638 HxlR-like helix-turn-helix RN84_10140 PF00883 Cytosol aminopeptidase family, catalytic domain RN84_10140 PF02789 Cytosol aminopeptidase family, N-terminal domain RN84_10145 PF01205 Uncharacterized protein family UPF0029 RN84_10145 PF09186 Domain of unknown function (DUF1949) RN84_10150 PF03009 Glycerophosphoryl diester phosphodiesterase family RN84_10155 PF14602 Hexapeptide repeat of succinyl-transferase RN84_10155 PF00132 Bacterial transferase hexapeptide (six repeats) RN84_10155 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RN84_10165 PF01103 Surface antigen RN84_10165 PF07244 Surface antigen variable number repeat RN84_10175 PF12072 Domain of unknown function (DUF3552) RN84_10175 PF00013 KH domain RN84_10175 PF01966 HD domain RN84_10200 PF09269 Domain of unknown function (DUF1967) RN84_10200 PF01018 GTP1/OBG RN84_10200 PF01926 50S ribosome-binding GTPase RN84_10205 PF08241 Methyltransferase domain RN84_10225 PF02086 D12 class N6 adenine-specific DNA methyltransferase RN84_10230 PF03600 Citrate transporter RN84_10235 PF03600 Citrate transporter RN84_10240 PF05524 PEP-utilising enzyme, N-terminal RN84_10240 PF00391 PEP-utilising enzyme, mobile domain RN84_10240 PF02896 PEP-utilising enzyme, TIM barrel domain RN84_10240 PF00381 PTS HPr component phosphorylation site RN84_10240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RN84_10245 PF13684 Dihydroxyacetone kinase family RN84_10245 PF02734 DAK2 domain RN84_10250 PF07883 Cupin domain RN84_10255 PF00994 Probable molybdopterin binding domain RN84_10255 PF02464 Competence-damaged protein RN84_10255 PF18146 Damage-inducible protein CinA KH domain RN84_10260 PF04608 Phosphatidylglycerophosphatase A RN84_10270 PF01121 Dephospho-CoA kinase RN84_10300 PF02086 D12 class N6 adenine-specific DNA methyltransferase RN84_10320 PF01554 MatE RN84_10325 PF07724 AAA domain (Cdc48 subfamily) RN84_10325 PF00004 ATPase family associated with various cellular activities (AAA) RN84_10325 PF02861 Clp amino terminal domain, pathogenicity island component RN84_10325 PF17871 AAA lid domain RN84_10325 PF10431 C-terminal, D2-small domain, of ClpB protein RN84_10330 PF08348 YheO-like PAS domain RN84_10330 PF13309 HTH domain RN84_10335 PF01212 Beta-eliminating lyase RN84_10340 PF00209 Sodium:neurotransmitter symporter family RN84_10360 PF00557 Metallopeptidase family M24 RN84_10360 PF05195 Aminopeptidase P, N-terminal domain RN84_10365 PF12951 Passenger-associated-transport-repeat RN84_10365 PF00082 Subtilase family RN84_10365 PF03797 Autotransporter beta-domain RN84_10370 PF01661 Macro domain RN84_10380 PF01235 Sodium:alanine symporter family RN84_10450 PF00005 ABC transporter RN84_10455 PF01032 FecCD transport family RN84_10465 PF00593 TonB dependent receptor RN84_10465 PF07715 TonB-dependent Receptor Plug Domain RN84_10470 PF00293 NUDIX domain RN84_10475 PF01042 Endoribonuclease L-PSP RN84_10485 PF00271 Helicase conserved C-terminal domain RN84_10485 PF00270 DEAD/DEAH box helicase RN84_10490 PF02618 YceG-like family RN84_10495 PF11734 TilS substrate C-terminal domain RN84_10495 PF01171 PP-loop family RN84_10500 PF17862 AAA+ lid domain RN84_10500 PF06480 FtsH Extracellular RN84_10500 PF00004 ATPase family associated with various cellular activities (AAA) RN84_10500 PF01434 Peptidase family M41 RN84_10505 PF00312 Ribosomal protein S15 RN84_10525 PF00578 AhpC/TSA family RN84_10530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RN84_10535 PF06123 Inner membrane protein CreD RN84_10545 PF00392 Bacterial regulatory proteins, gntR family RN84_10545 PF07729 FCD domain RN84_10550 PF01212 Beta-eliminating lyase RN84_10555 PF00209 Sodium:neurotransmitter symporter family RN84_10560 PF00226 DnaJ domain RN84_10560 PF01556 DnaJ C terminal domain RN84_10560 PF00684 DnaJ central domain RN84_10565 PF00483 Nucleotidyl transferase RN84_10565 PF14602 Hexapeptide repeat of succinyl-transferase RN84_10565 PF00132 Bacterial transferase hexapeptide (six repeats) RN84_10570 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RN84_10570 PF14572 Phosphoribosyl synthetase-associated domain RN84_10575 PF01300 Telomere recombination RN84_10590 PF02592 Putative vitamin uptake transporter RN84_10615 PF02632 BioY family RN84_10620 PF00005 ABC transporter RN84_10625 PF00005 ABC transporter RN84_10635 PF00255 Glutathione peroxidase RN84_10640 PF00005 ABC transporter RN84_10645 PF00528 Binding-protein-dependent transport system inner membrane component RN84_10655 PF10458 Valyl tRNA synthetase tRNA binding arm RN84_10655 PF08264 Anticodon-binding domain of tRNA RN84_10655 PF00133 tRNA synthetases class I (I, L, M and V) RN84_10680 PF01926 50S ribosome-binding GTPase RN84_10685 PF05362 Lon protease (S16) C-terminal proteolytic domain RN84_10685 PF00004 ATPase family associated with various cellular activities (AAA) RN84_10685 PF02190 ATP-dependent protease La (LON) substrate-binding domain RN84_10690 PF07724 AAA domain (Cdc48 subfamily) RN84_10690 PF10431 C-terminal, D2-small domain, of ClpB protein RN84_10690 PF06689 ClpX C4-type zinc finger RN84_10695 PF00574 Clp protease RN84_10700 PF05697 Bacterial trigger factor protein (TF) RN84_10700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RN84_10700 PF05698 Bacterial trigger factor protein (TF) C-terminus RN84_10705 PF02272 DHHA1 domain RN84_10705 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RN84_10705 PF01368 DHH family RN84_10705 PF17768 RecJ OB domain RN84_10710 PF02033 Ribosome-binding factor A RN84_10715 PF00009 Elongation factor Tu GTP binding domain RN84_10715 PF11987 Translation-initiation factor 2 RN84_10715 PF04760 Translation initiation factor IF-2, N-terminal region RN84_10725 PF00575 S1 RNA binding domain RN84_10725 PF08529 NusA N-terminal domain RN84_10725 PF13184 NusA-like KH domain RN84_10730 PF17384 RimP C-terminal SH3 domain RN84_10730 PF02576 RimP N-terminal domain RN84_10750 PF01048 Phosphorylase superfamily RN84_10755 PF02626 Carboxyltransferase domain, subdomain A and B RN84_10760 PF02682 Carboxyltransferase domain, subdomain C and D RN84_10765 PF01566 Natural resistance-associated macrophage protein RN84_10770 PF03746 LamB/YcsF family RN84_10775 PF01757 Acyltransferase family RN84_10780 PF03030 Inorganic H+ pyrophosphatase RN84_10795 PF00625 Guanylate kinase RN84_10805 PF08340 Domain of unknown function (DUF1732) RN84_10805 PF03755 YicC-like family, N-terminal region RN84_10810 PF04983 RNA polymerase Rpb1, domain 3 RN84_10810 PF00623 RNA polymerase Rpb1, domain 2 RN84_10810 PF04997 RNA polymerase Rpb1, domain 1 RN84_10810 PF05000 RNA polymerase Rpb1, domain 4 RN84_10810 PF04998 RNA polymerase Rpb1, domain 5 RN84_10815 PF04565 RNA polymerase Rpb2, domain 3 RN84_10815 PF04561 RNA polymerase Rpb2, domain 2 RN84_10815 PF10385 RNA polymerase beta subunit external 1 domain RN84_10815 PF00562 RNA polymerase Rpb2, domain 6 RN84_10815 PF04560 RNA polymerase Rpb2, domain 7 RN84_10815 PF04563 RNA polymerase beta subunit RN84_10820 PF16320 Ribosomal protein L7/L12 dimerisation domain RN84_10820 PF00542 Ribosomal protein L7/L12 C-terminal domain RN84_10825 PF00466 Ribosomal protein L10 RN84_10830 PF00687 Ribosomal protein L1p/L10e family RN84_10835 PF03946 Ribosomal protein L11, N-terminal domain RN84_10835 PF00298 Ribosomal protein L11, RNA binding domain RN84_10840 PF02357 Transcription termination factor nusG RN84_10855 PF00471 Ribosomal protein L33 RN84_10860 PF01475 Ferric uptake regulator family