LOCUS MH617391 2327 bp DNA circular ENV 05-AUG-2018 DEFINITION Geminiviridae sp. isolate ctdc223, complete genome. ACCESSION MH617391 VERSION MH617391.1 DBLINK BioProject: PRJNA393166 BioSample: SAMN09074552 Sequence Read Archive: SRR7122375 KEYWORDS ENV. SOURCE Geminiviridae sp. (animal metagenome) ORGANISM Geminiviridae sp. Viruses; ssDNA viruses; Geminiviridae; unclassified Geminiviridae. REFERENCE 1 (bases 1 to 2327) AUTHORS Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A. TITLE Uncovering a Universe of Circular DNA Viruses in Animal Metagenomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 2327) AUTHORS Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A. TITLE Direct Submission JOURNAL Submitted (12-JUL-2018) Lab of Cellular Oncology, National Cancer Institute, 37 Convent Dr., Room 4118, Bethesda, MD 20814, United States of America COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.0 Genome Coverage :: 4.581865x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2327 /organism="Geminiviridae sp." /mol_type="genomic DNA" /isolate="ctdc223" /isolation_source="minnow tissue" /db_xref="taxon:2202566" /environmental_sample /country="USA" /collection_date="01-Jun-2017" /note="genome binned from sequencing reads available in SRX4043871; metagenomic; derived from metagenome: animal metagenome" CDS 1..945 /inference="protein motif:CDD:279178" /note="Geminivirus Rep catalytic domain" /codon_start=1 /product="Rep catalytic domain protein" /protein_id="AXH76478.1" /translation="MVFRIDAKNFFITYPNSTNLPHGLVHQHLSDIRQPVNVYSCREA HENGEFHHHAIVAFENKFNCRNERYFDIEHEGVIYHPNIQACRDIPASNTYIGKDGVT LGDPIATIANARSNLYGDVLSEARDARHFMELIEERDTKNFVLNHDRLESFAIKRWGK WEEPEEPAFANDTFLNVPQSMQDWVNNELNGGEARPKCLIVVGGPGLGKTSWAESLGR HHYWVNRFTAARVKDAKYAILDDFDKLDDERHEFKGFWGSQRRVGVKISNGISGHRMW EWGIPSIWLYNKLPQCLWDETCYERQRSVLVTINRSLF" CDS complement(942..2009) /inference="similar to AA sequence:INSD:ALE29683.1" /codon_start=1 /product="putative capsid protein" /protein_id="AXH76477.1" /translation="MKRSGPATRYKRSNWPKYSAAANVIGAAYKAYRGRGRTQTTTKR KPQSGINGITTFQKDVKQVYRYKRAPNRLRKKWGRSRRTFTSNLLKSEGSRKFHYHGS ATWTTTAGNQAFYGWSTYGINGTGGYDGTGDLGDLYTRMDIELRQQGTLSDQNNRGEQ ARKWYFDHMRARCVLTNTGTSPIFWEIYECVARKDIQLIPEGTSIATFQAYSEQINKN GMLNNLAGGPGTADSAKQISPAVIPTNQVAGLTPFQFRHFCQAFKILKVTRLQAAPGH TVSFDASNPRNYTCVWDSMEDLLAKRGMTKFYMVRQWGAVTAEAPNNSASSAQFEIER DYNVKVLDSHLPQLNYFTYTG" CDS complement(1678..2049) /note="No HHBLITS hits" /codon_start=1 /product="hypothetical protein" /protein_id="AXH76476.1" /translation="MLWRDIVTQLISINEALRTGNKIQEKQLAQVQRGCQCDRSSLQG VPRPWTHADNYQAQTTKWNQRHNDFSERREASLPLQARTKQVTEEVGTLAPHVYVEPT QVRGESEVPLSRLRHMDHYRR" ORIGIN 1 atggtattcc gtatcgatgc gaagaacttc tttatcacct atcctaattc aacaaatctc 61 cctcacggtc tcgttcatca acacctctct gacatccgtc aaccagtgaa tgtctattcc 121 tgtcgcgaag cgcacgaaaa cggggagttc caccatcacg caatcgtcgc ctttgaaaac 181 aaattcaact gccgcaatga acgatacttc gacatcgagc acgagggagt catctatcat 241 cccaacatcc aagcatgcag agatatccca gcttccaata cctatatcgg aaaagatgga 301 gttactctcg gagatcctat cgcaactatc gccaacgcta gaagcaattt gtacggggac 361 gtcctcagcg aagcaagaga tgcacgtcac tttatggaac tcattgagga gcgcgataca 421 aagaactttg ttctcaatca cgaccgactt gaatcatttg caattaaaag atgggggaag 481 tgggaggaac cggaggagcc agctttcgct aacgacacct tcctaaacgt gccgcaatca 541 atgcaagact gggtaaacaa tgagttgaac ggaggagaag ctagacctaa atgcctcatt 601 gtagttggag gaccaggact gggaaaaaca tcttgggcag aatcacttgg aagacatcac 661 tattgggtca atagattcac agcagctaga gtcaaggatg caaagtacgc gattctcgac 721 gacttcgaca agctcgacga cgaaagacat gagttcaaag ggttctgggg aagtcaacga 781 agagtgggtg tcaagatttc taacggaatc tctggacaca gaatgtggga atggggaata 841 ccatctattt ggctgtacaa caaattgcct caatgcttgt gggatgaaac atgctatgaa 901 agacaaagaa gtgtattggt gactattaat agatcattat tctaaccagt atatgtaaag 961 taattgagtt gtggtaaatg gctatctaaa accttgacat tgtaatctct ctctatctcg 1021 aactgtgctg aagatgcgga gttgttgggc gcttccgctg tcaccgcccc ccattgccta 1081 accatgtaga acttggtcat acctcgctta gctaataggt cttccattga atcccaaacg 1141 caagtgtagt ttctagggtt actagcgtcg aaagaaacgg tatgccctgg ggcagcctgt 1201 agcctagtta cctttaaaat tttaaaggcc tggcaaaagt gcctaaactg aaatggagtt 1261 aagcctgcga cttgattggt agggataact gcgggtgaaa tttgcttagc ggaatcggct 1321 gtgcctggtc cgccggctaa attgttaagc atgccattct tattgatctg ctctgaataa 1381 gcctggaagg tagctatact tgtcccttcg ggaataagct gaatatcctt gcgtgctacg 1441 cactcgtata tctcccagaa aatcggagat gttccggtat tagtgagaac acagcgtgcc 1501 ctcatatggt cgaaatacca cttgcgtgcc tgttctcctc tgttgttttg atctgaaagg 1561 gttccttgct gacgcaattc aatatccata cgggtgtata gatcacctag atcgccggtg 1621 ccgtcgtagc ctccggtacc gttgatgcca taggttgacc agccgtaaaa cgcctgatta 1681 cctgcggtag tggtccatgt ggcggagccg tgatagtgga acttccgact cccctcggac 1741 ttgagtaggt tcgacgtaaa cgtgcggcgc gagcgtcccc acttcttccg taacctgttt 1801 ggtgcgcgct tgtagcggta aacttgcttc acgtctttct gaaaagtcgt tatgccgttg 1861 attccacttt gtggtttgcg cttggtagtt gtctgcgtgc gtccacggcc gcggtacgcc 1921 ttgtaagctg ctccgatcac attggcagcc gcgctgtact tgggccaatt gcttctcttg 1981 tatcttgttg ccggtccgga gcgcttcatt gatacttata agttgagtga ctatgtctct 2041 ccaaagcatg aaaaacactg gcgccaggaa atccactata tatagagaat gtcgctaggc 2101 gccaaaacgg gggtaatatt aaaccccgtt ttgatggcgc cagcctggga tcgagaccgg 2161 tcccaagtgt tcgtaatgca tccagagtaa attttactct gagagttatt ctagttctct 2221 attgacgcgt atggaaaaga gactcttttc cgggggtggg ttacgcgaaa cgctgaccga 2281 aaagcttcgc ttttggtgca atcgctaccg gcgctaacga caacgaa //